Query 015182
Match_columns 411
No_of_seqs 210 out of 1802
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0044 PyrC Dihydroorotase an 100.0 2.3E-66 5.1E-71 492.4 40.3 377 1-402 52-428 (430)
2 PLN02795 allantoinase 100.0 4.1E-63 8.9E-68 485.9 43.0 407 1-410 98-504 (505)
3 PRK13404 dihydropyrimidinase; 100.0 3.5E-61 7.5E-66 470.6 40.2 391 1-410 53-461 (477)
4 PRK06189 allantoinase; Provisi 100.0 7.6E-61 1.7E-65 467.2 42.1 391 1-410 53-447 (451)
5 PRK07627 dihydroorotase; Provi 100.0 7.2E-61 1.6E-65 461.4 41.1 370 1-396 54-424 (425)
6 PRK08044 allantoinase; Provisi 100.0 1.1E-60 2.4E-65 464.1 42.5 389 1-409 52-449 (449)
7 PRK09059 dihydroorotase; Valid 100.0 1.6E-60 3.4E-65 459.5 40.1 369 1-395 59-428 (429)
8 PRK07369 dihydroorotase; Provi 100.0 1.7E-60 3.6E-65 457.4 39.5 361 1-388 56-418 (418)
9 PRK08417 dihydroorotase; Provi 100.0 2.6E-60 5.7E-65 453.6 39.2 355 1-395 29-386 (386)
10 PRK01211 dihydroorotase; Provi 100.0 1.8E-60 3.8E-65 453.8 36.9 360 1-410 45-405 (409)
11 cd01318 DHOase_IIb Dihydroorot 100.0 5.7E-60 1.2E-64 446.1 38.4 357 1-390 5-361 (361)
12 TIGR03178 allantoinase allanto 100.0 2.9E-59 6.4E-64 455.8 41.8 390 1-409 50-443 (443)
13 PRK07575 dihydroorotase; Provi 100.0 2.7E-58 5.8E-63 446.9 40.1 382 1-410 55-436 (438)
14 PLN02942 dihydropyrimidinase 100.0 3.7E-58 8E-63 451.2 39.9 393 1-410 56-458 (486)
15 cd01315 L-HYD_ALN L-Hydantoina 100.0 1.6E-57 3.4E-62 445.6 42.5 395 1-409 51-447 (447)
16 TIGR00857 pyrC_multi dihydroor 100.0 3E-57 6.5E-62 436.9 40.5 373 1-396 38-411 (411)
17 cd01302 Cyclic_amidohydrolases 100.0 9.7E-58 2.1E-62 428.5 35.9 333 1-386 4-337 (337)
18 PRK09060 dihydroorotase; Valid 100.0 3.7E-57 8.1E-62 439.3 41.0 380 1-410 55-438 (444)
19 PRK08323 phenylhydantoinase; V 100.0 7.3E-57 1.6E-61 442.6 40.3 395 1-410 48-452 (459)
20 PRK09236 dihydroorotase; Revie 100.0 1.3E-56 2.8E-61 436.7 41.1 389 1-410 53-442 (444)
21 cd01314 D-HYD D-hydantoinases 100.0 1.4E-56 3E-61 438.9 40.0 387 1-402 50-443 (447)
22 PRK02382 dihydroorotase; Provi 100.0 1.5E-56 3.2E-61 436.2 38.8 381 1-410 53-435 (443)
23 PRK04250 dihydroorotase; Provi 100.0 3E-56 6.5E-61 425.3 37.8 352 1-408 46-398 (398)
24 TIGR02033 D-hydantoinase D-hyd 100.0 4.1E-56 8.9E-61 437.1 39.9 394 1-409 50-453 (454)
25 KOG2584 Dihydroorotase and rel 100.0 1.7E-57 3.7E-62 407.8 23.0 394 1-409 65-469 (522)
26 PRK00369 pyrC dihydroorotase; 100.0 3.2E-55 7E-60 415.5 38.2 339 1-406 46-385 (392)
27 PRK09357 pyrC dihydroorotase; 100.0 1.4E-54 3.1E-59 421.5 40.4 370 1-396 52-423 (423)
28 cd01316 CAD_DHOase The eukaryo 100.0 4.8E-54 1E-58 401.0 38.6 336 1-402 5-340 (344)
29 cd01317 DHOase_IIa Dihydroorot 100.0 9.8E-54 2.1E-58 408.0 38.5 360 1-386 13-374 (374)
30 cd01294 DHOase Dihydroorotase 100.0 5.1E-44 1.1E-48 336.1 31.4 321 1-377 3-330 (335)
31 TIGR00856 pyrC_dimer dihydroor 100.0 9.5E-41 2.1E-45 311.6 33.1 326 2-383 5-340 (341)
32 PRK09061 D-glutamate deacylase 100.0 4.8E-41 1E-45 330.3 29.9 343 1-410 70-506 (509)
33 PRK05451 dihydroorotase; Provi 100.0 5.2E-40 1.1E-44 308.4 31.9 324 2-384 8-344 (345)
34 cd01297 D-aminoacylase D-amino 100.0 6.7E-39 1.4E-43 309.9 27.2 312 1-406 52-415 (415)
35 PLN02599 dihydroorotase 100.0 5E-36 1.1E-40 279.9 29.4 291 2-339 26-329 (364)
36 PRK15446 phosphonate metabolis 100.0 1.2E-31 2.6E-36 255.4 23.2 311 1-396 51-382 (383)
37 TIGR02318 phosphono_phnM phosp 100.0 1.1E-31 2.3E-36 254.9 22.6 309 1-394 47-376 (376)
38 PRK12394 putative metallo-depe 100.0 4E-28 8.6E-33 232.2 27.7 297 1-397 55-377 (379)
39 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 8.5E-28 1.8E-32 233.8 22.1 233 93-400 175-411 (411)
40 cd01299 Met_dep_hydrolase_A Me 100.0 5.5E-27 1.2E-31 222.2 19.8 276 1-354 12-335 (342)
41 PRK13206 ureC urease subunit a 100.0 3E-26 6.5E-31 221.1 24.9 297 1-396 134-463 (573)
42 cd00375 Urease_alpha Urease al 99.9 6E-26 1.3E-30 217.9 25.7 299 1-400 128-463 (567)
43 PRK13985 ureB urease subunit b 99.9 2.2E-26 4.7E-31 220.1 21.8 290 1-396 128-458 (568)
44 PRK06687 chlorohydrolase; Vali 99.9 3.4E-26 7.3E-31 222.2 23.4 320 1-401 57-416 (419)
45 PRK13309 ureC urease subunit a 99.9 1.4E-25 3.1E-30 217.5 26.4 304 1-400 132-467 (572)
46 PRK07228 N-ethylammeline chlor 99.9 1E-26 2.2E-31 227.7 18.4 218 111-401 195-420 (445)
47 PRK13308 ureC urease subunit a 99.9 1.5E-25 3.4E-30 215.2 25.0 290 1-396 132-459 (569)
48 PRK08203 hydroxydechloroatrazi 99.9 1.5E-25 3.4E-30 219.6 24.8 228 96-401 198-430 (451)
49 COG1574 Predicted metal-depend 99.9 2.8E-26 6.1E-31 222.3 18.4 297 25-396 215-534 (535)
50 PRK13207 ureC urease subunit a 99.9 1.2E-24 2.6E-29 210.6 27.4 298 1-400 128-463 (568)
51 PRK08204 hypothetical protein; 99.9 2.4E-24 5.3E-29 211.3 28.2 209 111-401 197-423 (449)
52 PRK06151 N-ethylammeline chlor 99.9 3.2E-25 7E-30 218.7 21.5 229 92-401 201-444 (488)
53 PRK15493 5-methylthioadenosine 99.9 4.8E-25 1E-29 214.3 21.8 232 96-401 181-416 (435)
54 cd01308 Isoaspartyl-dipeptidas 99.9 6.5E-24 1.4E-28 204.4 29.1 305 1-402 53-383 (387)
55 PRK09045 N-ethylammeline chlor 99.9 4E-24 8.6E-29 209.0 27.1 234 93-401 183-421 (443)
56 PRK06380 metal-dependent hydro 99.9 5.3E-24 1.1E-28 206.9 26.7 220 109-401 180-406 (418)
57 COG1228 HutI Imidazolonepropio 99.9 3.1E-25 6.8E-30 210.4 16.8 188 109-397 214-404 (406)
58 cd01295 AdeC Adenine deaminase 99.9 3.8E-23 8.2E-28 200.3 31.4 274 1-396 8-292 (422)
59 PRK07583 cytosine deaminase-li 99.9 5.7E-24 1.2E-28 207.2 25.3 311 1-397 74-425 (438)
60 TIGR01178 ade adenine deaminas 99.9 1.3E-23 2.9E-28 207.2 27.8 273 1-396 49-333 (552)
61 PRK10657 isoaspartyl dipeptida 99.9 2.6E-23 5.5E-28 200.4 29.3 311 1-402 55-384 (388)
62 TIGR01975 isoAsp_dipep isoaspa 99.9 6.6E-23 1.4E-27 194.5 29.7 308 1-402 55-385 (389)
63 PRK09237 dihydroorotase; Provi 99.9 4.1E-23 8.8E-28 198.1 27.8 302 1-400 52-374 (380)
64 PRK08393 N-ethylammeline chlor 99.9 1.2E-23 2.6E-28 204.4 23.5 218 111-401 185-406 (424)
65 PRK12393 amidohydrolase; Provi 99.9 2.4E-23 5.1E-28 203.8 23.7 219 111-401 214-435 (457)
66 PRK06038 N-ethylammeline chlor 99.9 2.2E-23 4.7E-28 202.8 23.0 230 97-401 175-407 (430)
67 TIGR03314 Se_ssnA putative sel 99.9 5.3E-23 1.1E-27 200.4 25.1 226 97-401 189-420 (441)
68 PRK09229 N-formimino-L-glutama 99.9 5.6E-23 1.2E-27 201.4 24.9 225 97-401 201-438 (456)
69 PRK07203 putative chlorohydrol 99.9 1.3E-22 2.8E-27 198.4 26.9 226 97-401 190-421 (442)
70 TIGR01792 urease_alph urease, 99.9 1.9E-23 4.1E-28 202.7 20.7 295 1-400 127-462 (567)
71 TIGR02022 hutF formiminoglutam 99.9 5.8E-23 1.3E-27 200.8 23.8 214 111-401 212-438 (455)
72 PRK09228 guanine deaminase; Pr 99.9 6.2E-23 1.3E-27 199.3 23.5 216 111-396 207-432 (433)
73 TIGR02967 guan_deamin guanine 99.9 4.3E-23 9.2E-28 199.6 21.9 193 96-355 170-365 (401)
74 PRK05985 cytosine deaminase; P 99.9 1.7E-22 3.6E-27 194.6 25.2 280 25-397 103-391 (391)
75 PLN02303 urease 99.9 3.6E-23 7.7E-28 205.2 20.4 296 1-396 397-727 (837)
76 PRK07213 chlorohydrolase; Prov 99.9 2.7E-22 5.9E-27 191.6 23.8 198 110-392 174-375 (375)
77 cd01304 FMDH_A Formylmethanofu 99.9 1.8E-21 3.8E-26 187.0 28.7 87 312-409 425-511 (541)
78 PRK09356 imidazolonepropionase 99.9 4.9E-22 1.1E-26 192.7 24.3 199 93-395 206-406 (406)
79 PRK07572 cytosine deaminase; V 99.9 4.1E-22 8.8E-27 193.6 23.2 310 1-397 50-404 (426)
80 cd01307 Met_dep_hydrolase_B Me 99.9 6.8E-22 1.5E-26 186.5 24.0 263 1-354 33-317 (338)
81 cd01293 Bact_CD Bacterial cyto 99.9 6.9E-22 1.5E-26 191.4 24.5 282 25-393 101-398 (398)
82 PRK09230 cytosine deaminase; P 99.9 2.4E-21 5.2E-26 187.5 27.9 311 1-396 54-407 (426)
83 cd01313 Met_dep_hydrolase_E Me 99.9 1.1E-21 2.3E-26 190.1 24.0 205 111-391 203-418 (418)
84 cd01312 Met_dep_hydrolase_D Me 99.9 6.4E-22 1.4E-26 188.8 20.2 223 97-391 148-381 (381)
85 cd01296 Imidazolone-5PH Imidaz 99.9 1.5E-21 3.2E-26 187.2 22.8 194 92-390 176-371 (371)
86 TIGR01224 hutI imidazoloneprop 99.9 1.7E-21 3.7E-26 187.1 23.2 194 93-392 181-377 (377)
87 cd01303 GDEase Guanine deamina 99.9 5.4E-21 1.2E-25 185.9 25.5 209 111-390 204-429 (429)
88 PRK14085 imidazolonepropionase 99.9 6.2E-21 1.3E-25 183.0 21.8 177 89-354 187-364 (382)
89 TIGR03121 one_C_dehyd_A formyl 99.9 5.7E-20 1.2E-24 177.5 27.0 86 311-408 427-512 (556)
90 PRK06846 putative deaminase; V 99.9 3.2E-20 7E-25 179.6 25.0 300 1-396 66-406 (410)
91 PRK08418 chlorohydrolase; Prov 99.9 4.4E-21 9.5E-26 184.8 18.4 231 96-393 174-407 (408)
92 PRK10027 cryptic adenine deami 99.9 9.2E-20 2E-24 180.1 28.1 275 1-400 83-370 (588)
93 cd01306 PhnM PhnM is believed 99.9 3.2E-19 7E-24 164.3 25.1 154 111-353 159-312 (325)
94 COG3964 Predicted amidohydrola 99.9 9.6E-20 2.1E-24 158.0 20.0 302 1-401 56-379 (386)
95 COG1001 AdeC Adenine deaminase 99.8 4.2E-19 9E-24 169.1 24.7 276 1-398 76-362 (584)
96 cd01300 YtcJ_like YtcJ_like me 99.8 6.5E-21 1.4E-25 188.5 12.1 267 24-349 187-479 (479)
97 COG0402 SsnA Cytosine deaminas 99.8 4.8E-19 1E-23 171.9 22.4 216 110-400 193-414 (421)
98 cd01309 Met_dep_hydrolase_C Me 99.8 1.2E-18 2.5E-23 165.4 22.6 178 115-394 180-359 (359)
99 TIGR03583 EF_0837 probable ami 99.8 1.1E-17 2.4E-22 159.7 27.7 263 1-354 49-333 (365)
100 cd00854 NagA N-acetylglucosami 99.8 6.5E-18 1.4E-22 161.2 22.3 126 1-137 50-195 (374)
101 KOG3968 Atrazine chlorohydrola 99.8 1.7E-18 3.6E-23 157.6 12.6 215 111-395 216-438 (439)
102 PF13147 Amidohydro_4: Amidohy 99.8 1.6E-17 3.4E-22 154.1 17.7 288 1-348 8-304 (304)
103 COG3653 N-acyl-D-aspartate/D-g 99.8 4.1E-16 8.8E-21 141.7 24.6 91 314-410 474-568 (579)
104 COG0418 PyrC Dihydroorotase [N 99.8 1.7E-15 3.7E-20 132.0 26.4 285 2-334 8-304 (344)
105 PF01979 Amidohydro_1: Amidohy 99.7 3.9E-18 8.4E-23 161.1 10.1 40 312-351 293-333 (333)
106 PRK11170 nagA N-acetylglucosam 99.7 4.2E-16 9.1E-21 148.1 23.9 60 309-395 321-381 (382)
107 TIGR00221 nagA N-acetylglucosa 99.7 3.4E-16 7.4E-21 148.3 21.5 42 312-353 327-369 (380)
108 COG3454 Metal-dependent hydrol 99.7 8.6E-16 1.9E-20 135.1 21.5 92 256-394 285-377 (377)
109 COG1820 NagA N-acetylglucosami 99.7 1.3E-15 2.8E-20 139.6 20.7 61 308-395 319-380 (380)
110 COG0804 UreC Urea amidohydrola 99.7 5.1E-16 1.1E-20 139.9 17.7 286 2-395 129-457 (568)
111 PF07969 Amidohydro_3: Amidohy 99.7 1.6E-15 3.4E-20 147.3 16.9 248 26-349 136-404 (404)
112 PRK06886 hypothetical protein; 99.7 2E-14 4.3E-19 133.1 22.1 245 24-334 73-328 (329)
113 cd01292 metallo-dependent_hydr 99.7 7.7E-15 1.7E-19 134.2 18.5 249 4-330 1-275 (275)
114 KOG2902 Dihydroorotase [Nucleo 99.6 3.6E-13 7.9E-18 113.5 20.9 307 1-361 7-321 (344)
115 cd01305 archeal_chlorohydrolas 99.4 4.6E-12 1E-16 115.4 15.0 137 117-330 127-263 (263)
116 COG1229 FwdA Formylmethanofura 99.2 1.6E-09 3.5E-14 98.5 18.2 86 313-408 437-523 (575)
117 cd01310 TatD_DNAse TatD like p 99.1 3.1E-08 6.6E-13 89.6 21.9 241 4-332 1-251 (251)
118 PF12890 DHOase: Dihydro-orota 99.0 3E-10 6.6E-15 87.3 4.7 136 1-202 5-140 (142)
119 TIGR00010 hydrolase, TatD fami 99.0 9.8E-08 2.1E-12 86.4 21.4 123 4-137 1-130 (252)
120 PRK10812 putative DNAse; Provi 98.9 4.7E-07 1E-11 82.0 23.1 246 3-333 2-256 (265)
121 cd00530 PTE Phosphotriesterase 98.7 3.9E-06 8.5E-11 77.7 21.2 157 114-331 135-293 (293)
122 PRK11449 putative deoxyribonuc 98.6 1.2E-05 2.5E-10 72.7 21.8 244 2-333 3-258 (258)
123 PRK10425 DNase TatD; Provision 98.6 1.2E-05 2.5E-10 72.6 21.8 123 4-137 1-130 (258)
124 PRK09875 putative hydrolase; P 98.6 1.7E-05 3.7E-10 72.4 22.0 255 3-332 7-292 (292)
125 COG0084 TatD Mg-dependent DNas 98.6 1.9E-05 4.1E-10 70.5 21.6 243 4-333 3-256 (256)
126 PF01026 TatD_DNase: TatD rela 98.4 3.6E-05 7.8E-10 69.6 19.6 244 5-332 1-255 (255)
127 cd01320 ADA Adenosine deaminas 98.4 5.8E-05 1.3E-09 71.0 21.5 143 112-333 170-313 (325)
128 PRK09358 adenosine deaminase; 98.3 0.00019 4.2E-09 67.9 21.9 144 112-333 179-322 (340)
129 KOG3892 N-acetyl-glucosamine-6 98.3 2.2E-06 4.7E-11 74.4 7.4 61 309-396 344-405 (407)
130 TIGR01430 aden_deam adenosine 98.3 0.00015 3.4E-09 68.1 20.1 144 112-333 169-312 (324)
131 COG1099 Predicted metal-depend 98.2 0.00042 9.1E-09 58.9 19.3 236 4-333 2-253 (254)
132 PF13594 Amidohydro_5: Amidohy 98.2 8.6E-07 1.9E-11 62.4 2.4 36 1-37 33-68 (68)
133 PF02126 PTE: Phosphotriestera 98.0 0.00013 2.8E-09 67.3 12.6 269 3-331 7-307 (308)
134 COG1735 Php Predicted metal-de 97.6 0.0085 1.8E-07 53.8 17.3 267 3-333 17-314 (316)
135 cd01311 PDC_hydrolase 2-pyrone 97.5 0.017 3.6E-07 52.6 18.7 122 3-137 1-132 (263)
136 PF07908 D-aminoacyl_C: D-amin 97.4 0.00016 3.4E-09 46.6 3.0 30 381-410 18-47 (48)
137 PTZ00124 adenosine deaminase; 96.9 0.18 3.9E-06 47.9 19.3 143 115-333 206-349 (362)
138 PF04909 Amidohydro_2: Amidohy 96.8 0.074 1.6E-06 48.3 15.7 184 82-333 86-273 (273)
139 COG3618 Predicted metal-depend 96.3 0.78 1.7E-05 41.3 22.2 27 113-139 122-148 (279)
140 PF00962 A_deaminase: Adenosin 96.2 0.14 3E-06 48.3 14.0 118 93-273 164-281 (331)
141 cd01321 ADGF Adenosine deamina 96.1 0.06 1.3E-06 50.9 10.9 148 113-333 177-329 (345)
142 cd00443 ADA_AMPD Adenosine/AMP 96.1 0.095 2.1E-06 48.7 12.1 142 113-333 151-293 (305)
143 COG2159 Predicted metal-depend 95.7 1.3 2.9E-05 40.8 17.5 171 83-333 115-290 (293)
144 COG1816 Add Adenosine deaminas 94.9 0.36 7.7E-06 45.2 11.2 108 111-275 181-288 (345)
145 TIGR01431 adm_rel adenosine de 93.8 1.3 2.9E-05 43.7 13.0 62 195-273 351-412 (479)
146 COG1831 Predicted metal-depend 92.0 8.6 0.00019 34.3 19.6 139 113-333 143-282 (285)
147 KOG1097 Adenine deaminase/aden 91.2 3.3 7.1E-05 39.3 11.3 104 114-273 226-329 (399)
148 COG4464 CapC Capsular polysacc 87.5 0.47 1E-05 40.6 2.6 38 4-41 1-41 (254)
149 PRK00912 ribonuclease P protei 85.6 4.8 0.0001 35.8 8.3 68 256-344 158-229 (237)
150 PRK12330 oxaloacetate decarbox 84.0 20 0.00043 35.7 12.2 106 23-139 100-211 (499)
151 PRK06361 hypothetical protein; 83.5 11 0.00025 32.7 9.6 95 194-333 115-210 (212)
152 COG5016 Pyruvate/oxaloacetate 83.0 25 0.00053 33.6 11.6 107 23-140 101-211 (472)
153 PRK12581 oxaloacetate decarbox 80.4 45 0.00097 32.9 13.1 107 23-140 108-218 (468)
154 PF07969 Amidohydro_3: Amidohy 79.2 0.51 1.1E-05 45.7 -0.6 40 92-134 139-178 (404)
155 PRK14042 pyruvate carboxylase 78.4 40 0.00087 34.5 12.5 107 23-140 99-209 (596)
156 cd07944 DRE_TIM_HOA_like 4-hyd 76.2 55 0.0012 29.7 11.8 102 26-139 88-194 (266)
157 TIGR01496 DHPS dihydropteroate 75.4 25 0.00055 31.7 9.3 62 83-145 26-92 (257)
158 PRK08195 4-hyroxy-2-oxovalerat 75.0 56 0.0012 30.8 11.8 104 24-139 92-200 (337)
159 smart00518 AP2Ec AP endonuclea 74.3 33 0.00072 31.0 10.1 54 84-137 14-67 (273)
160 PRK01060 endonuclease IV; Prov 73.9 55 0.0012 29.7 11.4 54 84-137 16-72 (281)
161 PRK14041 oxaloacetate decarbox 73.5 61 0.0013 32.1 12.0 106 24-140 99-208 (467)
162 TIGR03217 4OH_2_O_val_ald 4-hy 72.4 75 0.0016 29.9 12.0 103 25-139 92-199 (333)
163 cd01300 YtcJ_like YtcJ_like me 72.3 1.4 3.1E-05 43.8 0.5 14 1-14 37-50 (479)
164 PRK12331 oxaloacetate decarbox 72.2 81 0.0018 31.1 12.5 105 24-139 100-208 (448)
165 COG1574 Predicted metal-depend 72.1 1.1 2.4E-05 44.8 -0.3 15 1-15 62-76 (535)
166 PF10566 Glyco_hydro_97: Glyco 71.4 11 0.00024 34.2 5.9 111 22-137 34-159 (273)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 70.6 74 0.0016 28.7 11.3 104 24-139 89-196 (263)
168 PF07071 DUF1341: Protein of u 70.4 29 0.00062 29.7 7.6 42 84-131 139-180 (218)
169 TIGR03581 EF_0839 conserved hy 69.4 32 0.00069 29.8 7.8 41 85-131 140-180 (236)
170 PRK14040 oxaloacetate decarbox 69.1 74 0.0016 32.6 11.8 107 23-140 100-210 (593)
171 PF02679 ComA: (2R)-phospho-3- 67.7 12 0.00026 33.3 5.2 96 93-225 37-135 (244)
172 PTZ00372 endonuclease 4-like p 67.3 1.3E+02 0.0028 29.3 13.5 83 52-138 117-202 (413)
173 COG0826 Collagenase and relate 66.7 58 0.0013 30.9 9.9 53 81-133 14-67 (347)
174 TIGR01108 oadA oxaloacetate de 65.4 95 0.0021 31.8 11.7 107 23-140 94-204 (582)
175 PF01791 DeoC: DeoC/LacD famil 65.1 9.7 0.00021 33.8 4.3 104 21-135 20-132 (236)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.9 1.1E+02 0.0024 27.8 12.9 105 24-139 95-203 (275)
177 TIGR00587 nfo apurinic endonuc 64.4 67 0.0015 29.2 9.8 56 83-138 14-72 (274)
178 PRK09282 pyruvate carboxylase 63.9 1.2E+02 0.0025 31.3 12.1 106 24-140 100-209 (592)
179 cd00951 KDGDH 5-dehydro-4-deox 63.6 1.1E+02 0.0023 28.2 11.0 109 17-135 18-132 (289)
180 PRK15108 biotin synthase; Prov 62.5 1.1E+02 0.0023 29.1 11.0 113 18-136 77-192 (345)
181 PRK03620 5-dehydro-4-deoxygluc 62.4 1.1E+02 0.0024 28.3 10.9 108 18-135 26-139 (303)
182 PLN02417 dihydrodipicolinate s 60.5 1.1E+02 0.0025 27.8 10.5 108 18-134 20-131 (280)
183 TIGR03249 KdgD 5-dehydro-4-deo 60.2 1.4E+02 0.0029 27.6 11.1 109 17-135 23-137 (296)
184 TIGR01235 pyruv_carbox pyruvat 60.1 1.6E+02 0.0034 33.0 13.0 106 23-139 628-743 (1143)
185 TIGR03849 arch_ComA phosphosul 59.3 48 0.001 29.4 7.4 97 92-226 23-123 (237)
186 PRK08392 hypothetical protein; 59.3 1.2E+02 0.0026 26.4 16.3 33 5-39 1-33 (215)
187 cd00019 AP2Ec AP endonuclease 59.2 1.4E+02 0.003 27.0 13.8 54 84-137 14-68 (279)
188 cd00950 DHDPS Dihydrodipicolin 58.9 1.3E+02 0.0028 27.4 10.7 110 18-135 19-133 (284)
189 PRK03170 dihydrodipicolinate s 58.6 48 0.001 30.5 7.8 50 86-138 28-80 (292)
190 TIGR00683 nanA N-acetylneurami 58.0 56 0.0012 30.1 8.1 49 87-138 28-80 (290)
191 cd00951 KDGDH 5-dehydro-4-deox 57.0 61 0.0013 29.8 8.2 48 87-137 28-78 (289)
192 TIGR00674 dapA dihydrodipicoli 56.8 51 0.0011 30.2 7.7 50 86-138 25-77 (285)
193 PRK11858 aksA trans-homoaconit 56.2 1.5E+02 0.0033 28.4 11.0 46 88-139 153-199 (378)
194 PRK12999 pyruvate carboxylase; 55.8 1.6E+02 0.0036 32.9 12.3 111 19-140 625-746 (1146)
195 cd00952 CHBPH_aldolase Trans-o 55.0 75 0.0016 29.5 8.5 50 86-138 35-87 (309)
196 cd00959 DeoC 2-deoxyribose-5-p 55.0 17 0.00036 31.5 3.9 104 17-133 14-121 (203)
197 cd00953 KDG_aldolase KDG (2-ke 53.7 1E+02 0.0022 28.1 9.0 49 86-137 26-74 (279)
198 cd00408 DHDPS-like Dihydrodipi 53.1 1.8E+02 0.0039 26.4 11.1 112 17-136 15-131 (281)
199 PF00701 DHDPS: Dihydrodipicol 52.3 85 0.0018 28.8 8.3 51 86-139 28-81 (289)
200 PLN02417 dihydrodipicolinate s 52.2 74 0.0016 29.1 7.9 49 87-138 29-80 (280)
201 PF02811 PHP: PHP domain; Int 52.1 18 0.0004 29.9 3.6 36 5-40 1-36 (175)
202 KOG0259 Tyrosine aminotransfer 51.7 93 0.002 29.7 8.2 53 82-136 188-240 (447)
203 PRK03170 dihydrodipicolinate s 51.1 2E+02 0.0043 26.4 10.6 108 18-135 20-134 (292)
204 cd00408 DHDPS-like Dihydrodipi 50.2 86 0.0019 28.5 8.0 51 86-139 24-77 (281)
205 cd00952 CHBPH_aldolase Trans-o 49.6 1.8E+02 0.004 27.0 10.1 108 18-135 27-142 (309)
206 PRK09250 fructose-bisphosphate 48.6 23 0.00049 33.3 3.8 50 84-135 150-199 (348)
207 cd00950 DHDPS Dihydrodipicolin 48.1 90 0.002 28.5 7.8 50 86-138 27-79 (284)
208 TIGR02660 nifV_homocitr homoci 47.9 1.6E+02 0.0036 28.0 9.7 46 88-139 150-196 (365)
209 TIGR00683 nanA N-acetylneurami 47.0 2.3E+02 0.005 26.0 10.8 107 18-134 19-134 (290)
210 TIGR01949 AroFGH_arch predicte 46.8 50 0.0011 29.8 5.8 108 17-136 33-144 (258)
211 PRK07226 fructose-bisphosphate 46.5 88 0.0019 28.3 7.4 107 17-135 36-146 (267)
212 COG0134 TrpC Indole-3-glycerol 45.3 69 0.0015 28.7 6.2 52 87-146 123-174 (254)
213 TIGR02313 HpaI-NOT-DapA 2,4-di 45.1 1E+02 0.0022 28.4 7.6 49 87-138 28-79 (294)
214 PF00218 IGPS: Indole-3-glycer 44.9 57 0.0012 29.3 5.7 50 85-142 123-172 (254)
215 KOG2550 IMP dehydrogenase/GMP 44.5 47 0.001 31.8 5.1 48 85-134 305-360 (503)
216 TIGR00126 deoC deoxyribose-pho 44.4 1.8E+02 0.0038 25.4 8.5 105 16-133 14-122 (211)
217 TIGR00674 dapA dihydrodipicoli 44.3 2.5E+02 0.0054 25.6 11.2 108 18-135 17-131 (285)
218 PRK15452 putative protease; Pr 44.3 3.3E+02 0.0071 26.9 12.0 51 82-134 12-65 (443)
219 PRK03620 5-dehydro-4-deoxygluc 43.9 1.2E+02 0.0027 28.0 8.0 47 87-136 35-84 (303)
220 PRK10657 isoaspartyl dipeptida 43.5 1.9E+02 0.0042 27.6 9.7 81 163-270 166-249 (388)
221 PRK08227 autoinducer 2 aldolas 42.4 31 0.00068 31.2 3.7 48 84-133 98-145 (264)
222 PF00701 DHDPS: Dihydrodipicol 42.2 2E+02 0.0044 26.2 9.2 109 18-136 20-135 (289)
223 cd00953 KDG_aldolase KDG (2-ke 42.0 2.7E+02 0.0059 25.3 12.2 111 15-135 15-128 (279)
224 cd07939 DRE_TIM_NifV Streptomy 41.1 2.4E+02 0.0052 25.3 9.3 47 87-139 146-193 (259)
225 PRK15446 phosphonate metabolis 40.9 29 0.00064 33.3 3.5 34 111-144 210-244 (383)
226 COG0329 DapA Dihydrodipicolina 40.9 2E+02 0.0043 26.6 8.8 50 87-139 32-84 (299)
227 COG1830 FbaB DhnA-type fructos 40.5 52 0.0011 29.6 4.6 53 83-137 100-152 (265)
228 cd07940 DRE_TIM_IPMS 2-isoprop 40.4 2.3E+02 0.0049 25.6 9.1 48 86-139 149-200 (268)
229 PRK08444 hypothetical protein; 40.3 1.8E+02 0.0038 27.7 8.5 110 18-133 81-207 (353)
230 PRK09856 fructoselysine 3-epim 38.9 2.9E+02 0.0063 24.8 12.1 51 84-135 17-67 (275)
231 PRK00278 trpC indole-3-glycero 38.9 3E+02 0.0064 24.9 10.8 101 21-139 71-171 (260)
232 PRK04147 N-acetylneuraminate l 38.8 3.1E+02 0.0068 25.1 11.2 109 17-135 21-137 (293)
233 PRK07360 FO synthase subunit 2 38.0 2.1E+02 0.0045 27.4 8.7 114 18-133 92-219 (371)
234 cd00954 NAL N-Acetylneuraminic 37.7 2E+02 0.0044 26.3 8.4 50 86-138 27-80 (288)
235 PF00682 HMGL-like: HMGL-like 37.4 2.4E+02 0.0053 24.7 8.7 47 87-139 144-192 (237)
236 TIGR02351 thiH thiazole biosyn 37.3 1.7E+02 0.0037 28.0 8.0 108 18-133 104-220 (366)
237 PRK05096 guanosine 5'-monophos 37.0 59 0.0013 30.5 4.6 48 84-133 163-218 (346)
238 PRK09240 thiH thiamine biosynt 36.3 2.1E+02 0.0045 27.4 8.5 107 18-133 105-221 (371)
239 PRK13957 indole-3-glycerol-pho 36.1 1E+02 0.0022 27.6 5.8 49 85-141 116-164 (247)
240 PF00478 IMPDH: IMP dehydrogen 35.9 56 0.0012 31.0 4.3 48 85-134 162-217 (352)
241 PRK09195 gatY tagatose-bisphos 35.1 3.6E+02 0.0078 24.8 10.8 105 26-134 90-208 (284)
242 PRK06552 keto-hydroxyglutarate 34.8 1.7E+02 0.0037 25.6 7.0 99 18-140 23-121 (213)
243 PRK13802 bifunctional indole-3 34.5 1.8E+02 0.004 30.4 8.1 53 85-145 125-177 (695)
244 PLN02460 indole-3-glycerol-pho 34.2 2.8E+02 0.006 26.2 8.5 49 86-142 196-244 (338)
245 cd00954 NAL N-Acetylneuraminic 34.2 3.7E+02 0.008 24.6 11.8 110 17-134 18-134 (288)
246 cd00958 DhnA Class I fructose- 34.0 1.7E+02 0.0037 25.7 7.1 105 17-133 18-127 (235)
247 PRK04147 N-acetylneuraminate l 33.5 2.1E+02 0.0046 26.3 7.8 50 86-138 30-83 (293)
248 TIGR03221 muco_delta muconolac 33.4 63 0.0014 23.8 3.3 44 312-355 12-60 (90)
249 PRK12858 tagatose 1,6-diphosph 33.2 61 0.0013 30.6 4.2 49 85-134 111-162 (340)
250 PF03932 CutC: CutC family; I 33.0 1.2E+02 0.0027 26.1 5.7 102 24-137 11-123 (201)
251 PRK06015 keto-hydroxyglutarate 32.7 1.8E+02 0.004 25.1 6.7 96 19-141 15-110 (201)
252 PF02219 MTHFR: Methylenetetra 32.7 3.7E+02 0.0081 24.5 9.3 105 19-133 84-203 (287)
253 PF00834 Ribul_P_3_epim: Ribul 32.1 3.3E+02 0.0072 23.5 8.4 100 84-227 16-116 (201)
254 TIGR02313 HpaI-NOT-DapA 2,4-di 32.1 4.1E+02 0.0088 24.4 10.7 108 18-135 19-134 (294)
255 TIGR00190 thiC thiamine biosyn 32.1 4.8E+02 0.01 25.3 13.1 169 26-231 83-270 (423)
256 cd07938 DRE_TIM_HMGL 3-hydroxy 31.7 1.5E+02 0.0033 27.0 6.4 48 86-139 155-204 (274)
257 TIGR02090 LEU1_arch isopropylm 31.2 4E+02 0.0086 25.4 9.4 47 87-139 148-195 (363)
258 TIGR01305 GMP_reduct_1 guanosi 31.0 1.4E+02 0.0029 28.2 5.9 50 84-133 162-217 (343)
259 TIGR01182 eda Entner-Doudoroff 30.7 2.4E+02 0.0053 24.4 7.1 95 19-140 19-113 (204)
260 PRK07709 fructose-bisphosphate 30.6 4.3E+02 0.0093 24.3 11.6 109 25-137 92-212 (285)
261 PRK07094 biotin synthase; Prov 30.5 4.4E+02 0.0096 24.4 10.0 108 19-135 72-185 (323)
262 KOG3892 N-acetyl-glucosamine-6 29.9 45 0.00097 30.0 2.5 46 1-47 65-116 (407)
263 cd08205 RuBisCO_IV_RLP Ribulos 29.8 3.5E+02 0.0075 25.9 8.7 109 19-139 145-258 (367)
264 PF07894 DUF1669: Protein of u 29.7 2.3E+02 0.005 25.9 7.0 46 85-137 138-183 (284)
265 cd07948 DRE_TIM_HCS Saccharomy 29.6 4.2E+02 0.0092 23.9 9.7 108 24-139 75-195 (262)
266 PRK06852 aldolase; Validated 29.3 72 0.0016 29.5 3.8 50 84-135 119-174 (304)
267 cd00945 Aldolase_Class_I Class 28.8 3.4E+02 0.0074 22.6 8.0 102 18-136 11-121 (201)
268 cd07945 DRE_TIM_CMS Leptospira 28.8 2E+02 0.0042 26.4 6.6 47 87-139 154-202 (280)
269 PF14871 GHL6: Hypothetical gl 28.6 1.8E+02 0.0039 23.1 5.6 28 110-137 39-66 (132)
270 PRK07998 gatY putative fructos 28.6 4.5E+02 0.0097 24.1 8.8 107 25-137 89-208 (283)
271 PRK05692 hydroxymethylglutaryl 28.5 1.8E+02 0.0039 26.7 6.4 49 85-139 160-210 (287)
272 PRK08123 histidinol-phosphatas 28.4 68 0.0015 29.1 3.6 36 4-39 3-38 (270)
273 PLN02389 biotin synthase 28.3 5.4E+02 0.012 24.7 10.4 113 18-136 117-234 (379)
274 PLN02321 2-isopropylmalate syn 28.2 3.6E+02 0.0079 28.0 8.9 47 87-139 247-298 (632)
275 PRK07114 keto-hydroxyglutarate 27.9 1.9E+02 0.0041 25.4 6.1 99 19-141 26-125 (222)
276 COG0075 Serine-pyruvate aminot 27.6 5.6E+02 0.012 24.7 10.3 29 111-139 116-144 (383)
277 PRK09613 thiH thiamine biosynt 27.3 6.3E+02 0.014 25.1 10.8 109 18-133 116-238 (469)
278 PTZ00413 lipoate synthase; Pro 27.1 5.2E+02 0.011 24.9 9.1 67 67-133 297-367 (398)
279 PRK07328 histidinol-phosphatas 26.7 4.7E+02 0.01 23.5 17.7 35 4-39 3-37 (269)
280 PRK12738 kbaY tagatose-bisphos 26.6 5.1E+02 0.011 23.8 11.6 108 23-134 87-208 (286)
281 PRK06256 biotin synthase; Vali 26.4 3.2E+02 0.0069 25.6 7.9 110 19-135 93-207 (336)
282 COG1168 MalY Bifunctional PLP- 26.3 2.2E+02 0.0048 27.2 6.4 50 83-133 147-196 (388)
283 cd01301 rDP_like renal dipepti 26.2 5.3E+02 0.012 23.9 20.7 29 301-329 280-308 (309)
284 COG0329 DapA Dihydrodipicolina 26.1 5.3E+02 0.011 23.8 11.2 112 15-136 20-138 (299)
285 PRK12737 gatY tagatose-bisphos 26.1 5.2E+02 0.011 23.7 11.5 110 24-137 88-211 (284)
286 PRK08444 hypothetical protein; 25.8 5.1E+02 0.011 24.6 9.1 53 84-141 87-139 (353)
287 PRK08610 fructose-bisphosphate 25.8 5.3E+02 0.011 23.7 11.5 109 25-137 92-212 (286)
288 PLN03228 methylthioalkylmalate 25.3 3.8E+02 0.0082 27.0 8.3 48 86-139 245-297 (503)
289 PF07287 DUF1446: Protein of u 25.3 6E+02 0.013 24.3 9.8 66 115-217 58-123 (362)
290 COG1603 RPP1 RNase P/RNase MRP 25.0 3E+02 0.0065 24.3 6.7 34 309-342 187-223 (229)
291 PRK05926 hypothetical protein; 25.0 3.9E+02 0.0084 25.6 8.1 112 18-133 100-225 (370)
292 PRK06806 fructose-bisphosphate 24.7 5.5E+02 0.012 23.5 11.3 108 23-134 87-206 (281)
293 PF01208 URO-D: Uroporphyrinog 24.5 4.7E+02 0.01 24.4 8.7 45 90-139 192-245 (343)
294 smart00481 POLIIIAc DNA polyme 24.2 1.1E+02 0.0023 20.7 3.2 34 6-39 1-34 (67)
295 PF01261 AP_endonuc_2: Xylose 24.0 2.3E+02 0.005 23.8 6.1 115 87-226 2-135 (213)
296 TIGR03326 rubisco_III ribulose 24.0 6.4E+02 0.014 24.6 9.4 112 19-140 159-276 (412)
297 PF01244 Peptidase_M19: Membra 23.5 6.1E+02 0.013 23.7 16.5 32 301-332 288-319 (320)
298 PF01081 Aldolase: KDPG and KH 23.4 2.7E+02 0.0059 23.9 6.1 97 18-141 18-114 (196)
299 TIGR03249 KdgD 5-dehydro-4-deo 23.4 5.8E+02 0.013 23.4 10.6 46 88-136 34-82 (296)
300 PRK04208 rbcL ribulose bisopho 23.3 7.5E+02 0.016 24.6 9.9 113 19-140 175-293 (468)
301 PRK00912 ribonuclease P protei 23.3 91 0.002 27.6 3.4 33 4-39 3-35 (237)
302 PF03102 NeuB: NeuB family; I 23.1 4.6E+02 0.0099 23.4 7.7 32 111-142 52-83 (241)
303 KOG3020 TatD-related DNase [Re 22.5 6.2E+02 0.013 23.4 12.9 38 2-41 16-53 (296)
304 cd03174 DRE_TIM_metallolyase D 22.5 5.5E+02 0.012 22.8 11.2 55 79-139 144-201 (265)
305 COG0413 PanB Ketopantoate hydr 22.5 2.1E+02 0.0046 25.7 5.3 40 86-137 99-139 (268)
306 TIGR01859 fruc_bis_ald_ fructo 22.2 6.1E+02 0.013 23.2 10.7 109 24-137 88-209 (282)
307 PRK00311 panB 3-methyl-2-oxobu 21.4 2.4E+02 0.0051 25.6 5.6 42 84-137 97-139 (264)
308 cd02742 GH20_hexosaminidase Be 21.3 2.4E+02 0.0051 26.1 5.8 81 111-228 12-98 (303)
309 TIGR02318 phosphono_phnM phosp 21.2 1E+02 0.0022 29.5 3.5 33 113-145 207-240 (376)
310 TIGR01856 hisJ_fam histidinol 21.1 1E+02 0.0023 27.5 3.4 34 5-39 1-34 (253)
311 cd07941 DRE_TIM_LeuA3 Desulfob 21.1 3.5E+02 0.0075 24.6 6.8 48 86-139 157-206 (273)
312 TIGR01858 tag_bisphos_ald clas 20.9 6.5E+02 0.014 23.1 11.2 108 23-134 85-206 (282)
313 cd06568 GH20_SpHex_like A subg 20.8 1.4E+02 0.0031 28.0 4.3 86 111-228 14-101 (329)
314 TIGR03569 NeuB_NnaB N-acetylne 20.5 5E+02 0.011 24.4 7.7 32 111-142 72-103 (329)
315 PRK12344 putative alpha-isopro 20.3 2.8E+02 0.0062 28.0 6.5 47 87-139 165-212 (524)
316 PRK14453 chloramphenicol/florf 20.2 7.5E+02 0.016 23.5 9.7 76 65-142 249-333 (347)
317 cd00537 MTHFR Methylenetetrahy 20.1 6.5E+02 0.014 22.7 9.2 36 91-135 158-193 (274)
318 COG3033 TnaA Tryptophanase [Am 20.0 3.6E+02 0.0078 25.7 6.4 54 83-137 171-228 (471)
No 1
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-66 Score=492.45 Aligned_cols=377 Identities=38% Similarity=0.562 Sum_probs=339.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||.|||+++||.+++|++.+++++|++|||||++||| |+.|..++.+.++.+...++.++.+++.++.+++....
T Consensus 52 ~PG~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~ 130 (430)
T COG0044 52 LPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMP-NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNL 130 (430)
T ss_pred ccCeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEecccc
Confidence 69999999999999999999999999999999999999999 99999999999999998888889999999999887543
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
... ++.+... +.++|.|+++.. +..+.+.+++.++++++.|.++.+||+++..+...+.+. +..+...+
T Consensus 131 ~~~-~~~~~~~--~~g~~~F~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~----g~~~~~~~ 199 (430)
T COG0044 131 GKL-ELTERGV--EAGFKGFMDDST----GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNE----GLRAPELG 199 (430)
T ss_pred chh-hhhhhhh--ccceEEEecCCc----CcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhc----Cccchhhc
Confidence 322 2222221 467788887653 357889999999999999999999999998765555443 45667778
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
+..+|..+|..++.+.+++++.+ |.++|++|+|+. +++++++.++..|++++|+++||||+++++++..+++
T Consensus 200 ~~~~p~~aE~~~iar~~~la~~~-------g~~vhi~HiSt~-~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~ 271 (430)
T COG0044 200 LAGRPPIAEASAIARDLELARAT-------GARVHICHISTK-ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGT 271 (430)
T ss_pred cCCCChHHHHHHHHHHHHHHHHh-------CCcEEEEEcCCH-HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCc
Confidence 89999999999999999999977 899999999999 9999999999999999999999999999988888899
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+..++.+||+++.+|.+++++|||+|++..+|. .+|..+|+|++|+|+.++.+++++.+..+|+.+++
T Consensus 272 ~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~---~~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v 348 (430)
T COG0044 272 LAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKR---LPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLV 348 (430)
T ss_pred ceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhc---cchhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHH
Confidence 999999999999999999999999999999999999998885 35899999999999999999996666779999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++.+|.|++|++|||+|+|++..|+++.+ +++++.. ||||+|.++.|+|.+|+++|++||++++..
T Consensus 349 ~~~S~nPA~ifgl~~~g~i~~G~~ADl~lvD~~~~~~i~~~-~~~sk~~-~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~ 426 (430)
T COG0044 349 ELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRAE-ELYSKAK-NSPFEGFELKGRVVATILRGKVVYEDGEVI 426 (430)
T ss_pred HHHhhCHHHHhCCCCCCcccCCCccCEEEEcCCCCeEEchh-hhccccC-CCCcCCCEEeeeEEEEEECCEEEEECCcEe
Confidence 99999999999996688899999999999999999999998 9999999 999999999999999999999999999765
Q ss_pred CC
Q 015182 401 PA 402 (411)
Q Consensus 401 ~~ 402 (411)
..
T Consensus 427 ~~ 428 (430)
T COG0044 427 AK 428 (430)
T ss_pred cC
Confidence 43
No 2
>PLN02795 allantoinase
Probab=100.00 E-value=4.1e-63 Score=485.89 Aligned_cols=407 Identities=76% Similarity=1.233 Sum_probs=342.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++++...++++.+++++++++||||++||+.++.|..+..+.++...+.......+++.++.+.+....
T Consensus 98 ~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 177 (505)
T PLN02795 98 MPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENA 177 (505)
T ss_pred ecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcch
Confidence 69999999999988777889999999999999999999999445676677778877776666667788877765543333
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+.++.+.++.+.|+.+||+|+.+.+..+++..+++.+.+++++++++|+++.+|+++.+.+...... ..+..+...+
T Consensus 178 ~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~---~~~~~~~~~~ 254 (505)
T PLN02795 178 HNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRL---DADPRSYSTY 254 (505)
T ss_pred hHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhh---hcCCcChhHh
Confidence 3456677777789999999987654334456788999999999999999999999998754311100 1223344455
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
..+||..+|..++.+++.+++++++.+..++.++|++|+++..+.+++++.+|++|++|++++|||||+++.+++..+++
T Consensus 255 ~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~ 334 (505)
T PLN02795 255 LKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDT 334 (505)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCC
Confidence 78899999999999999999876544444589999999998425899999999999999999999999999988776788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|+..++++||+++.+|.+++|+|||+|++..+|.....+|+.++.|++|+++.++.+++...+.++++++++
T Consensus 335 ~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v 414 (505)
T PLN02795 335 RYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLA 414 (505)
T ss_pred ceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999998888655567999999999999999999988778889999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++++|+|++|++|||||||++..|+++.+..++++..+|+||.|.++.|+|.+||++|++||++|+++
T Consensus 415 ~~~s~~pA~~~gl~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~ 494 (505)
T PLN02795 415 RWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHA 494 (505)
T ss_pred HHHHHHHHHHhCCCCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEc
Confidence 99999999999997689999999999999999999999876124555523999999999999999999999999999998
Q ss_pred CCCCCccccC
Q 015182 401 PAACGSPILA 410 (411)
Q Consensus 401 ~~~~g~~~~~ 410 (411)
..+.|+++..
T Consensus 495 ~~~~G~~~~~ 504 (505)
T PLN02795 495 KQACGSPILA 504 (505)
T ss_pred CCCCCeEecC
Confidence 6678988764
No 3
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=3.5e-61 Score=470.65 Aligned_cols=391 Identities=29% Similarity=0.439 Sum_probs=332.9
Q ss_pred CCceeecccccCCC---CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|++.+ +...++++.+++++++++||||+++++ ++.+.....+.++......++...++++++.+.+.
T Consensus 53 ~PG~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~ 131 (477)
T PRK13404 53 LPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFA-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVAD 131 (477)
T ss_pred ecCEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEcc-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecC
Confidence 69999999999875 345679999999999999999999998 55566666777877776666777889888866554
Q ss_pred CCccch-HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh---hhhhccCcCC
Q 015182 78 ENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLD 153 (411)
Q Consensus 78 ~~~~~~-~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~ 153 (411)
...+.+ .++..+.+.|+.+||+|+++++ +.++++++.+++++|+++|++|.+|+++...++. ...+ .+
T Consensus 132 ~~~~~~~~~v~~l~~~G~~~iKi~~~~~~----~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~----~G 203 (477)
T PRK13404 132 PTEEVLTEELPALIAQGYTSFKVFMTYDD----LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLA----AG 203 (477)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCC----CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH----CC
Confidence 333333 5778888899999999986432 3568899999999999999999999999876541 1122 22
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
..+...+...||..+|..++.+++++++++ +.++|++|+|+. .++++++.+|+.|+.+++++|||||+++.+
T Consensus 204 ~~~~~~~~~~rp~~~E~~~v~~~~~la~~~-------g~~~hi~Hvs~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~ 275 (477)
T PRK13404 204 LTAPKYHAISRPMLAEREATHRAIALAELV-------DVPILIVHVSGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAE 275 (477)
T ss_pred CcchhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHH
Confidence 344556678899999999999999999977 999999999998 899999999999999999999999999988
Q ss_pred ccCC---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhh----cc-cCCccccCCCCchhhhHHHHH
Q 015182 234 EIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL----LD-EGNFLKAWGGISSLQFVLPVT 305 (411)
Q Consensus 234 ~~~~---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~----~~-~~~~~~~~~g~~~~~~~~~~~ 305 (411)
++.. .+...+++||+|...++++||+++.+|.+++|+|||+|++..+|. .. ..+|+.++.|++++++.++.+
T Consensus 276 ~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~l 355 (477)
T PRK13404 276 DLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLL 355 (477)
T ss_pred HhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHH
Confidence 7754 678899999999999999999999999999999999999865541 00 237888999999999999999
Q ss_pred HHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEE
Q 015182 306 WSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 383 (411)
Q Consensus 306 ~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v 383 (411)
++... ..+++++++++++|.|||++||+ +++|+|++|++||||+||++.+|+++.+ .++++.. |+||.|.++.|+|
T Consensus 356 l~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~-~~~~~~~-~sp~~g~~~~g~v 433 (477)
T PRK13404 356 FSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNA-DLHHAAD-YTPYEGMRVTGWP 433 (477)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchH-HhcccCC-CCcccceEEeeeE
Confidence 98755 44699999999999999999999 7789999999999999999999999987 7788887 9999999999999
Q ss_pred EEEEECCEEEEEcCcccCCC-CCccccC
Q 015182 384 LATISRGNLVYKEGNHAPAA-CGSPILA 410 (411)
Q Consensus 384 ~~ti~~G~~v~~~g~~~~~~-~g~~~~~ 410 (411)
.+||++|++||++|+++..+ .|++++.
T Consensus 434 ~~tiv~G~vv~~~g~~~~~~~~G~~~~~ 461 (477)
T PRK13404 434 VTVLSRGRVVVEDGELVAERGSGQFLAR 461 (477)
T ss_pred EEEEECCEEEEECCEEecCCCceeEecC
Confidence 99999999999999998654 5888763
No 4
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=7.6e-61 Score=467.24 Aligned_cols=391 Identities=41% Similarity=0.713 Sum_probs=339.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++||.++.|...+.+.+..+.+.++..+.+++.++.+.++.
T Consensus 53 lPG~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 130 (451)
T PRK06189 53 FPGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG-- 130 (451)
T ss_pred ecCEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc--
Confidence 699999999999887778899999999999999999999986666777778888888877777788999887554432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~ 157 (411)
.++++..+.+.|+.++|+|+++.+..+++..+...+.++++.+++.|.++.+||++++.+... +.. .+..+.
T Consensus 131 -~~~~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~----~g~~~~ 205 (451)
T PRK06189 131 -NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQ----QGKTDV 205 (451)
T ss_pred -CHHHHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHh----cCCCCh
Confidence 356777778889999999987643334455678899999999999999999999987754422 221 223445
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..++..+|..+|..++.+++.+++++ |.++|++|+|+. +++++++++|..|++++|++||||++++++++..
T Consensus 206 ~~~~~~~P~~~E~~~v~~~l~la~~~-------g~~~hi~HiSt~-~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~ 277 (451)
T PRK06189 206 RDYLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER 277 (451)
T ss_pred hHccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC
Confidence 56778899999999999999999976 889999999998 8999999999999999999999999999988766
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCH
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 316 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~ 316 (411)
.+...+++||+|...++.+||+++++|.+++|+|||+|++...|. ..+|+.+|.|++|+++.++.+++.. .+.++++
T Consensus 278 ~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~ 355 (451)
T PRK06189 278 IGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPL 355 (451)
T ss_pred cCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCH
Confidence 678899999999999999999999999999999999999877664 2468899999999999999998765 4556999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||++||++++|+|++|++|||+|||++.+|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++
T Consensus 356 ~~~~~~~t~npA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~tiv~G~~v~~~ 433 (451)
T PRK06189 356 ETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKE-DLFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQD 433 (451)
T ss_pred HHHHHHHhhhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEECHH-HhhhcCC-CCCcCCcEEEeEEEEEEECCEEEEEC
Confidence 999999999999999996689999999999999999989999887 7777777 99999999999999999999999999
Q ss_pred CcccCCCCCccccC
Q 015182 397 GNHAPAACGSPILA 410 (411)
Q Consensus 397 g~~~~~~~g~~~~~ 410 (411)
|+++..+.|+.|+.
T Consensus 434 g~~~~~~~G~~~~~ 447 (451)
T PRK06189 434 GEVFPPPRGQLLRP 447 (451)
T ss_pred CEEccCCCCcEecC
Confidence 99988888999874
No 5
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=7.2e-61 Score=461.35 Aligned_cols=370 Identities=25% Similarity=0.392 Sum_probs=320.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC-CC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-EN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (411)
+|||||+|+|+++++...++++.+++++++++|||||++|| ++.|..+..+.++.+....+....+++.++..++. .+
T Consensus 54 lPG~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (425)
T PRK07627 54 CPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLK 132 (425)
T ss_pred eccEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCC-CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCC
Confidence 69999999999999888899999999999999999999999 88777777666666655555445666654544332 23
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.+||.+ +.+..+...+.++++++++.|.++.+||++......... ..+..+...
T Consensus 133 ~~~~~~i~~l~~~G~~~fk~~-------~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~ 201 (425)
T PRK07627 133 GEVLTEMVELTEAGCVGFSQA-------NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRL 201 (425)
T ss_pred ccCHHHHHHHHhCCEEEEEcC-------CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHc
Confidence 345777888888899999964 223467888999999999999999999999766443322 223345566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||+.+|..++.+++.+++.+ +.++|++|+|+. +++++++.+|++|+++++++|||||+++.+++...+
T Consensus 202 ~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~ 273 (425)
T PRK07627 202 GLSGVPVAAETIALHTIFELMRVT-------GARVHLARLSSA-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFD 273 (425)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccC
Confidence 778899999999999999999977 899999999999 999999999999999999999999999988876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+.+++++||+++.+|.+++++|||+|++..+|. .+|+.++.|+++++..++.++....+.+++++++
T Consensus 274 ~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~ 350 (425)
T PRK07627 274 SQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKL---LPFAEATPGATGLELLLPLTLKWADEAKVPLARA 350 (425)
T ss_pred CceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999999999999999999999999999999876663 4799999999999999998887777778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|+ ++|+|++|+.|||++||++.+|+++.+ +++++.. |+||.|.++.++|.+||++|++||++
T Consensus 351 l~~~t~~pA~~lg~-~~G~l~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 351 LARITSAPARVLGL-PAGRLAEGAPADLCVFDPDAHWRVEPR-ALKSQGK-NTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred HHHHHHHHHHHhCC-CCCcccCCCcCCEEEECCCCcEEEChh-hccccCC-CCCCcCCEeeeEEEEEEECCEEEeec
Confidence 99999999999999 579999999999999999999999988 8888888 99999999999999999999999986
No 6
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=1.1e-60 Score=464.13 Aligned_cols=389 Identities=38% Similarity=0.679 Sum_probs=337.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+.++.|..++.+.++.+.+.++.++.+++.++.+++..
T Consensus 52 ~Pg~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~-- 129 (449)
T PRK08044 52 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY-- 129 (449)
T ss_pred cCCeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC--
Confidence 599999999999888777899999999999999999999996677888889999988888777888999888776543
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCC----CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCC
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLD 153 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~ 153 (411)
.+.++..+.+.|+.+||+|+.|.+. .++...++..+.++++++++.|.++.+||++...++.. ..+ .+
T Consensus 130 -~~~ei~~l~~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~----~G 204 (449)
T PRK08044 130 -NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKR----EG 204 (449)
T ss_pred -CHHHHHHHHHcCceEEEEEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHh----cC
Confidence 4567777778899999999876321 22334567789999999999999999999998764421 122 22
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
......+...||..+|..++.+++.+++++ |.++|++|+++. .++++++.+++.|.++++++|||||+++++
T Consensus 205 ~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~-------g~~vhi~HiSt~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~ 276 (449)
T PRK08044 205 RVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCHISSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTD 276 (449)
T ss_pred CCChhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHH
Confidence 334556678899999999999999999987 889999999998 899999999999999999999999999998
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
++...+...+++||+|...++++||++|.+|.+++|+|||+|++..+|. .+|+.++.|++|++..++.+++... ..
T Consensus 277 ~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~ 353 (449)
T PRK08044 277 QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKR 353 (449)
T ss_pred HhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcC
Confidence 8766788899999999999999999999999999999999999877764 4789999999999999998887655 55
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+++++++++++|.|||++||++++|+|++|++|||+|||++..|+++.+ .++++.. |+||+|++++|+|.+||++|++
T Consensus 354 ~l~~~~~v~~~s~npA~~lgl~~~G~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~~G~~ 431 (449)
T PRK08044 354 GMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNE-DLEYRHK-VSPYVGRTIGARITKTILRGDV 431 (449)
T ss_pred CCCHHHHHHHHHHhHHHHhCCCCCCcCCCCCccCEEEECCCCcEEECHH-HccccCC-CCCCCCCEEeeeEEEEEECCEE
Confidence 6999999999999999999995589999999999999999999999988 8888888 9999999999999999999999
Q ss_pred EEEcCcc-cCCCCCcccc
Q 015182 393 VYKEGNH-APAACGSPIL 409 (411)
Q Consensus 393 v~~~g~~-~~~~~g~~~~ 409 (411)
||++++. ..++.|++|+
T Consensus 432 v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 432 IYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred EEECCccccCCCCcccCC
Confidence 9999884 4667888874
No 7
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=1.6e-60 Score=459.53 Aligned_cols=369 Identities=24% Similarity=0.326 Sum_probs=323.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|++.++..+++++.+.+++++++||||+++|| ++.|..++.+.++.+.+.++..+.+++.+++.++.+ +
T Consensus 59 ~PG~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 137 (429)
T PRK09059 59 APGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLA 137 (429)
T ss_pred eccEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEecc-CCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCC
Confidence 69999999999887777889999999999999999999999 888888888888888877777678999888777653 3
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.++|.+ +.+..+...+.++++++++.|+++.+||++.+.+...+.. .+..+...
T Consensus 138 ~~~l~e~~~l~~~Gv~~f~~~-------~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~----~~~~~~~~ 206 (429)
T PRK09059 138 GEEMTEFGLLRAAGAVAFTDG-------RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMN----EGLFASWL 206 (429)
T ss_pred CcchHHHHHHHhcCcEEEecC-------CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcC----CcHHHHHc
Confidence 445777878878888887631 2234466779899999999999999999998865533322 22334556
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+..+||..+|..++.+++.+++.+ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..++
T Consensus 207 ~~~~rP~~aE~~av~r~~~la~~~-------~~~~hi~hvs~~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~ 278 (429)
T PRK09059 207 GLSGIPREAEVIPLERDLRLAALT-------RGRYHAAQISCA-ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYR 278 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEecCCH-HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccC
Confidence 678899999999999999999876 899999999998 899999999999999999999999999988876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+.+++.+||+++.+|.+++++|||+|++..+|. .+|+.++.|++|+++.++.++..+.+.+++++++
T Consensus 279 ~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~---~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~ 355 (429)
T PRK09059 279 TFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR---LPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRL 355 (429)
T ss_pred CccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHH
Confidence 8899999999999999999999999999999999999987774 3799999999999999999987666667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
++++|.||||+||++ +|+|++|++||||+||++..|+++.+ .++++.. |+||+|++++|+|.+||++|++||+
T Consensus 356 ~~~~s~nPA~~~gl~-~G~l~~G~~ADlvl~d~~~~~~v~~~-~~~s~~~-~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 356 IEALSTRPAEIFGLP-AGTLKPGAPADIIVIDLDEPWVVDPE-DLKSRSK-NTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred HHHHhHHHHHHhCCC-cCcccCCCcCCEEEECCCCCEEECcc-cCccCCC-CCCCCCCEEeeEEEEEEECCEEEee
Confidence 999999999999995 69999999999999999999999999 8899988 9999999999999999999999985
No 8
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=1.7e-60 Score=457.37 Aligned_cols=361 Identities=28% Similarity=0.398 Sum_probs=320.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN- 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (411)
+|||||+|+|++.++..+++++.+++++|+++||||+++|| |+.|..++.+.++.+.+.++..+.+++.++..++...
T Consensus 56 lPG~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~p-n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 134 (418)
T PRK07369 56 GPGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQ 134 (418)
T ss_pred ecCEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCC
Confidence 69999999999999888899999999999999999999999 8889889999999888887777889999988776543
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
...++++.++.+.|+.+||.+ ++..+...+.++++++++.|.++.+|+++...+...+.+ .+..+...
T Consensus 135 ~~~~~ei~~l~~~Gv~~f~~~--------~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~----~g~~~~~~ 202 (418)
T PRK07369 135 GKQLTELAELAAAGVVGFTDG--------QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMR----EGLLALRL 202 (418)
T ss_pred CccHhhHHHHHHCCCEEEECC--------CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCccc----CChhHHHh
Confidence 235677888888899998832 234567789999999999999999999998876544432 33445666
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.+++++++.+ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..++
T Consensus 203 ~~~~~p~~aE~~av~r~~~la~~~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~ 274 (418)
T PRK07369 203 GLPGDPASAETTALAALLELVAAI-------GTPVHLMRISTA-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYD 274 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccC
Confidence 778999999999999999999977 899999999999 999999999999999999999999999998876677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~ 318 (411)
...+++||||+..++++||+++.+|.+++|+|||+|++..+|. .+|+.+|+|++|++..++.+++... ..++++++
T Consensus 275 ~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~ 351 (418)
T PRK07369 275 PNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKT---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQ 351 (418)
T ss_pred CCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHcc---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHH
Confidence 7899999999999999999999999999999999999988774 3799999999999999999987655 45699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEE
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~ 388 (411)
+++++|.|||++||++ .|+|++|++|||+++|++..|+++.+ .++++.. |+||+|++++|+|.+||+
T Consensus 352 ~v~~~s~nPA~~lgl~-~G~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 352 LWQALSTNPARCLGQE-PPSLAPGQPAELILFDPQKTWTVSAQ-TLHSLSR-NTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred HHHHHHHhHHHHhCCC-cCcccCCCcCCEEEEcCCCCEEECcc-cccCCCC-CCCCCCCEeeeEEEEEEC
Confidence 9999999999999996 59999999999999999999999999 8999988 999999999999999985
No 9
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=2.6e-60 Score=453.64 Aligned_cols=355 Identities=25% Similarity=0.303 Sum_probs=306.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.++.+ ++++.+++++|+++|||||+||| ++.|..++.+.++.+.+..+. ...+++.. .+.
T Consensus 29 lPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 102 (386)
T PRK08417 29 LPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTPAIDNEIALELINSAQRELPMQIFPSIR---ALD- 102 (386)
T ss_pred ccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCCCCCCHHHHHHHHHHhhccCCcEEEEEE---EEC-
Confidence 79999999999988765 58999999999999999999999 888888888888877665554 23444422 232
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.+.++..+.+.|+.+||.+. ..+++.+.+++++++++|++|.+||++...+...... .+..++.
T Consensus 103 ~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~----~g~~~~~ 169 (386)
T PRK08417 103 EDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMN----DGELSFE 169 (386)
T ss_pred CCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHh----cChhhHH
Confidence 23346778888888999988631 3578899999999999999999999998765544332 3345667
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~ 238 (411)
.++..||..+|..++.+++++++++ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..+
T Consensus 170 ~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~ 241 (386)
T PRK08417 170 LGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENF 241 (386)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCc
Confidence 7788999999999999999999987 899999999999 99999999999999999999999999999887667
Q ss_pred CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHH
Q 015182 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLE 317 (411)
Q Consensus 239 ~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~ 317 (411)
+...+++||||+.+++++||+++.+|.+++|+|||+|++..+|. .+|+.++.|++|+++.++.+++.+.+. +++++
T Consensus 242 ~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~---~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~ 318 (386)
T PRK08417 242 NTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD---LAFDEAAFGIDSICEYFSLCYTYLVKEGIITWS 318 (386)
T ss_pred CcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHH
Confidence 78899999999999999999999999999999999999987774 378999999999999999999776644 59999
Q ss_pred HHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 318 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
++++++|.|||++||++. |+|++|++|||++||++.+|.++.. |+||.|..+.++|..||++|++||+
T Consensus 319 ~~~~~~t~~pA~~lgl~~-G~l~~G~~ADlvi~d~~~~~~~~~~---------~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 319 ELSRFTSYNPAQFLGLNS-GEIEVGKEADLVLFDPNESTIIDDN---------FSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCeEeCCC---------CCCccCCEEeccEEEEEECCEEEeC
Confidence 999999999999999964 9999999999999999988887654 8999999999999999999999984
No 10
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=1.8e-60 Score=453.80 Aligned_cols=360 Identities=26% Similarity=0.370 Sum_probs=304.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|++||||||+||| |+.|..++.+.+..+.+.++..+.+++.++.+.+..+
T Consensus 45 lPG~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP-nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~- 122 (409)
T PRK01211 45 LPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNN- 122 (409)
T ss_pred cCCeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC-CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCch-
Confidence 79999999999999999999999999999999999999999 8888888999999998888777899999987654322
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
. ++.+.|+.++|+|+++... .+. .... ..++.+++.|.++.+||++...+...... ......
T Consensus 123 ~------~~~~~g~~~~k~f~~~~~~~~~~-~~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~------~~~~~~ 185 (409)
T PRK01211 123 A------LILDERSIGLKVYMGGTTNTNGT-DIEG----GEIKKINEANIPVFFHAELSECLRKHQFE------SKNLRD 185 (409)
T ss_pred h------hHHhccCcEEEEEcCCCcCCCcc-ccCH----HHHHHHHccCCEEEEeccChHHhhhhhhC------cchHhh
Confidence 1 2334599999999864210 111 1222 34466678999999999998775543221 112345
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.+++.++.+ ++|++|+++. +++ .+|+||+|||||+++.++ .++
T Consensus 186 ~~~~rP~~aE~~ai~~~~~la~~----------~~hi~HvSt~-~~~----------~~vt~Ev~phhL~l~~~~--~~~ 242 (409)
T PRK01211 186 HDLARPIECEIKAVKYVKNLDLK----------TKIIAHVSSI-DVI----------GRFLREVTPHHLLLNDDM--PLG 242 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCC----------CcEEEEecCh-hhc----------CceEEEecHHHHcccccc--ccC
Confidence 67889999999999999988752 5999999997 555 169999999999999876 267
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+.+++++||++|.+|.+++|+|||+|+...+| .+|+.+|+|++|+++.++.+++.+.+.++|++++
T Consensus 243 ~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK----~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~ 318 (409)
T PRK01211 243 SYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDK----QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVL 318 (409)
T ss_pred CceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHh----CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHH
Confidence 889999999999999999999999999999999999987665 3689999999999999999997655667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++ +|+|++|++|||||||++..|+++.+ .++++.. |+||+|.++. +|..||++|++||++|++
T Consensus 319 v~~~s~nPAki~gl~-kG~l~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~spf~G~~~~-~v~~tiv~G~~v~~~~~~ 394 (409)
T PRK01211 319 YKTAIERPASLFGIK-KGKIEEGYDADFMAFDFTNIKKINDK-RLHSKCP-VSPFNGFDAI-FPSHVIMRGEVVIDNYEL 394 (409)
T ss_pred HHHHHHHHHHHhCCC-CCcccCCCcCCEEEEcCCCeEEEChH-HhhccCC-CCCCCCCEec-cEEEEEECCEEEEECCEE
Confidence 999999999999995 79999999999999999999999988 8888888 9999999988 999999999999999999
Q ss_pred cCCCCCccccC
Q 015182 400 APAACGSPILA 410 (411)
Q Consensus 400 ~~~~~g~~~~~ 410 (411)
...+.|++++.
T Consensus 395 ~~~~~G~~~~~ 405 (409)
T PRK01211 395 ISERTGKFVPK 405 (409)
T ss_pred ccccCceEecc
Confidence 87678998864
No 11
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=5.7e-60 Score=446.12 Aligned_cols=357 Identities=34% Similarity=0.470 Sum_probs=311.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|+++|||||+||| |+.|..++.+.++.+.+.++..+.+++.++.+++..
T Consensus 5 lPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~~~-- 81 (361)
T cd01318 5 LPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVTGS-- 81 (361)
T ss_pred ecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeecCh--
Confidence 69999999999999999999999999999999999999999 888999999999998888777778999998776542
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.++.+.|+.++|.|+.+.. ... ..+...|.++++++. +++.+||++.+.+.....+.+ ....+
T Consensus 82 ---~~l~~~~~~~~~g~k~f~~~~~-~~~-~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~------~~~~~ 147 (361)
T cd01318 82 ---EDLEELDKAPPAGYKIFMGDST-GDL-LDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK------GESAH 147 (361)
T ss_pred ---hhHHHHHHhhCcEEEEEEecCC-CCc-CCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh------hccCC
Confidence 2466666678899999986432 112 257888999998875 789999999877554433221 11245
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
..+||..+|..++.+++.+++.+ +.++|++|+++. +++++++.+| .+++|++|||||+++.+++..++.
T Consensus 148 ~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~~~~~ 216 (361)
T cd01318 148 PRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYDRLGT 216 (361)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHhcCCC
Confidence 67899999999999999999876 899999999999 8999999886 579999999999999887766788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|+..++++||+++++|.+++++|||+|+...+|. .+|+.++.|+++++..++.++.++.+.++++++++
T Consensus 217 ~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~ 293 (361)
T cd01318 217 LGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVV 293 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999999887774 46889999999999988888876666789999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+++|.|||+++|++++|+|++|++|||+|||++..|+++.+ .++++.. |+||+|++++|+|.+||++|
T Consensus 294 ~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 294 RLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAE-EFHSKAG-WTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHhHHHHHHhCCCCCCccCCCCcCCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEeCc
Confidence 99999999999996589999999999999999999999988 8888888 99999999999999999998
No 12
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=2.9e-59 Score=455.81 Aligned_cols=390 Identities=48% Similarity=0.814 Sum_probs=337.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++++...++++.+++++++++||||++||+.++.|..+..+.++...+.......+++.++.+.++
T Consensus 50 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 126 (443)
T TIGR03178 50 FPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP--- 126 (443)
T ss_pred eccEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---
Confidence 69999999999988777789999999999999999999998555676677788888877776667889888765443
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~ 157 (411)
+.++++.++.+.|+.++|+|+++.+..+++..+.+++.++++.++++|+++.+|+++....... +. ..+..++
T Consensus 127 ~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~----~~g~~~~ 202 (443)
T TIGR03178 127 YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAP----PQGGVGA 202 (443)
T ss_pred CCHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHH----hcCCCCh
Confidence 3456677778889999999987643333456788999999999999999999999987665432 22 2334556
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
.++...||..+|..++.+++++++++ +.++|++|+++. +.+++++.++++|++++++++|||++++.+++..
T Consensus 203 ~~~~~~~p~~ae~~~~~~~~~la~~~-------g~~vhi~Hiss~-~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~ 274 (443)
T TIGR03178 203 DAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLSSA-EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD 274 (443)
T ss_pred hHhcCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEECccceEecHHHhhC
Confidence 67778899999999999999999876 899999999998 8999999999999999999999999999887766
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCH
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTL 316 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~ 316 (411)
.+...+++||+|...++.+||+++++|.+++|+|||+|+....|. ..+|+.++.|+++++..++.+++... +.++++
T Consensus 275 ~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~ 352 (443)
T TIGR03178 275 GGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPL 352 (443)
T ss_pred cCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCH
Confidence 778899999999999999999999999999999999999876663 24788999999999999998887654 567999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||+++|++++|+|++|++|||||||++.+|.++++ .+.++.. |+||.|.++.++|.+||++|++||++
T Consensus 353 ~~~~~~~t~~pA~~~g~~~~G~l~~G~~Ad~vi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 430 (443)
T TIGR03178 353 EDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPD-DLYYRHK-VSPYVGRTIGGRVRATYLRGQCIYDD 430 (443)
T ss_pred HHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH-HhhhcCC-CCCcCCcEEeeEEEEEEECCEEEEEC
Confidence 999999999999999996679999999999999999889999887 7777777 99999999999999999999999999
Q ss_pred CcccCCCCCcccc
Q 015182 397 GNHAPAACGSPIL 409 (411)
Q Consensus 397 g~~~~~~~g~~~~ 409 (411)
|+++..+.|++|.
T Consensus 431 g~~~~~~~g~~~~ 443 (443)
T TIGR03178 431 EQFIGAPKGQLLL 443 (443)
T ss_pred CeeccCCCCcccC
Confidence 9999777898874
No 13
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=2.7e-58 Score=446.94 Aligned_cols=382 Identities=27% Similarity=0.400 Sum_probs=320.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++..++|++++++++++++||||++||+ ++.|..++.+.+..+.+.+...+.++++++.+.++
T Consensus 55 ~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp-~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~--- 130 (438)
T PRK07575 55 LPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP--- 130 (438)
T ss_pred cccEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC-CCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---
Confidence 69999999999988878899999999999999999999999 78888888999988887777777899999876653
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+.+.++..+ .++.++|.|+.+.. .+....+...+++++ .+.+.++.+|+++...+...... ..+......+
T Consensus 131 ~~l~~l~~~--~~~~g~~~f~~~~~-~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~---~~g~~~~~~~ 201 (438)
T PRK07575 131 DNLPELLTA--NPTCGIKIFMGSSH-GPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARRAE---FAGISDPADH 201 (438)
T ss_pred cCHHHHHHh--hCCeEEEEEEeeCC-CCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHh---hccCcCcccc
Confidence 233344322 36788999874321 111122344455543 35799999999987753321110 1223344456
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
...+|..+|..++.+++++++++ +.++|++|+|+. ++++++++++ +..++++++|||++++++++...+.
T Consensus 202 ~~~~p~~aE~~av~~~~~la~~~-------g~~lhi~HiSt~-~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~ 271 (438)
T PRK07575 202 SQIQDEEAALLATRLALKLSKKY-------QRRLHILHLSTA-IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGT 271 (438)
T ss_pred cccCcHHHHHHHHHHHHHHHHHH-------CCCEEEEECCCH-HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCc
Confidence 67899999999999999999977 899999999998 8999998876 4679999999999999988766778
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|..+++.+||+++++|++++|+|||+|++..+|. .+|+.+|.|++++++.++.+++.+.+.++++++++
T Consensus 272 ~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~ 348 (438)
T PRK07575 272 LAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVV 348 (438)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHcc---CCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999999999999999999999999999999987774 47889999999999999999988776679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++++|+|++|++|||||||++.+|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++|+++
T Consensus 349 ~~~s~npAk~lgl~~~G~L~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~ 426 (438)
T PRK07575 349 RWMSTAVARAYGIPNKGRIAPGYDADLVLVDLNTYRPVRRE-ELLTKCG-WSPFEGWNLTGWPVTTIVGGQIVFDRGQVN 426 (438)
T ss_pred HHHhhhHHHHcCCCCCCccCCCCcCCEEEEcCCCCEEEchH-HccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEc
Confidence 99999999999996579999999999999999999999887 8888888 999999999999999999999999999998
Q ss_pred CCCCCccccC
Q 015182 401 PAACGSPILA 410 (411)
Q Consensus 401 ~~~~g~~~~~ 410 (411)
..+.|+.|++
T Consensus 427 ~~~~G~~~~~ 436 (438)
T PRK07575 427 TEVRGQALTF 436 (438)
T ss_pred cCCCceEeec
Confidence 8788998874
No 14
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=3.7e-58 Score=451.23 Aligned_cols=393 Identities=26% Similarity=0.351 Sum_probs=322.7
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++++ +..++|++++++++++++||||++||. ... .....+.++.+.+.+. +..+++.++.+.+..
T Consensus 56 ~PG~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~-~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 132 (486)
T PLN02942 56 MPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFV-IPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKW 132 (486)
T ss_pred ecCEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCC-CCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCC
Confidence 69999999999987 356789999999999999999999996 322 1122566666655554 456888877665443
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
....++++.++. +.|+.++|+|+.+.+ ....+++.+.++++.++++|.++++|+++.........+.. ..+....
T Consensus 133 ~~~~~~e~~~l~~~~gv~~~k~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~ 208 (486)
T PLN02942 133 DDTVSRDMETLVKEKGINSFKFFMAYKG---SLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGP 208 (486)
T ss_pred cHhHHHHHHHHHHhCCCceEEEEEecCC---CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCCh
Confidence 322345666664 358889999987642 23457899999999999999999999988765543332210 1112233
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+...||..+|..++.+++.++..+ +.++|++|+++. ++++.|+.+|++|+.|+++++||||+++++++..
T Consensus 209 ~~~~~~rP~~~E~~av~~~~~la~~~-------g~~~~i~H~s~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~ 280 (486)
T PLN02942 209 EGHALSRPPLLEGEATARAIRLAKFV-------NTPLYVVHVMSI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWD 280 (486)
T ss_pred hhhhccCCchHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcC
Confidence 34567799999999999999998876 899999999998 8889999999999999999999999999877643
Q ss_pred ----CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-
Q 015182 238 ----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY- 312 (411)
Q Consensus 238 ----~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 312 (411)
++...+++||+|+..+++.||+++++|+++++||||+|++...|..+.++|+.++.|+++++..++.+++.....
T Consensus 281 ~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~ 360 (486)
T PLN02942 281 PDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESG 360 (486)
T ss_pred cccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcC
Confidence 577889999999999999999999999999999999999988876544578999999999999999888765544
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++||||++|++.+|.++.+ .++++.. |+||+|.+++|+|..||++|+
T Consensus 361 ~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~-~~~s~~~-~~py~g~~l~g~v~~tiv~G~ 438 (486)
T PLN02942 361 QISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK-THHSRID-TNVYEGRRGKGKVEVTISQGR 438 (486)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHH-HccccCC-CCCccCcEeeeeEEEEEECCE
Confidence 499999999999999999999 6789999999999999999999999987 6777777 999999999999999999999
Q ss_pred EEEEcCcccCC-CCCccccC
Q 015182 392 LVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 392 ~v~~~g~~~~~-~~g~~~~~ 410 (411)
+||++|+++.. ..|++|+.
T Consensus 439 ~v~~~g~~~~~~~~G~~~~~ 458 (486)
T PLN02942 439 VVWENGELKVVRGSGRYIEM 458 (486)
T ss_pred EEEECCEEeccCCCceEecC
Confidence 99999998754 35888763
No 15
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=1.6e-57 Score=445.62 Aligned_cols=395 Identities=54% Similarity=0.920 Sum_probs=336.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+.++.|.....+.++.+.+..+....+++.++.+.++.
T Consensus 51 ~PG~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 128 (447)
T cd01315 51 MPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG-- 128 (447)
T ss_pred eccEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC--
Confidence 699999999999877778899999999999999999999985555666777888888777666678888877654433
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
.++++.++.+.|+.++|+|+++....+++..+.+++.++++.++++|+++++|+++...+.....+.. ..+..++.++
T Consensus 129 -~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~ 206 (447)
T cd01315 129 -NLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDY 206 (447)
T ss_pred -CHHHHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHh
Confidence 45667777888999999998764333444568899999999999999999999999776554332211 1223455667
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
+..+|..+|..++.++++++++. |.++|++|+++. .++++++.++.+|.+++++++|||++++.+++...+.
T Consensus 207 ~~~~p~~~e~~~~~~~~~la~~~-------g~~ihi~h~s~~-~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~ 278 (447)
T cd01315 207 LASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSA-EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGT 278 (447)
T ss_pred hccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCC
Confidence 78899999999999999999976 899999999998 8999999999999999999999999999888777788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQL 319 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~a 319 (411)
..++.||+|...++.+||+++++|.+++++|||+|+....|..+..+|+.++.|+++.+..++.+++... ..+++++++
T Consensus 279 ~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 358 (447)
T cd01315 279 EFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDI 358 (447)
T ss_pred ceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHH
Confidence 8999999999999999999999999999999999998777753335788889999999998988886655 457999999
Q ss_pred HHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCc
Q 015182 320 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398 (411)
Q Consensus 320 l~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~ 398 (411)
++++|.|||+++|+ +++|+|++|++|||||+|++..|.++.+ .+.++.. |+||.|.++.++|.+||++|++||++|+
T Consensus 359 ~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~ti~~G~~v~~~~~ 436 (447)
T cd01315 359 ARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAE-DLYYKNK-ISPYVGRTLKGRVHATILRGTVVYQDGE 436 (447)
T ss_pred HHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHH-HccccCC-CCCccCeEEeeeEEEEEECCEEEEECCe
Confidence 99999999999999 4789999999999999999988888877 6777777 9999999999999999999999999999
Q ss_pred ccCCCCCcccc
Q 015182 399 HAPAACGSPIL 409 (411)
Q Consensus 399 ~~~~~~g~~~~ 409 (411)
++..+.|++|+
T Consensus 437 ~~~~~~G~~~~ 447 (447)
T cd01315 437 VVGEPLGQLLL 447 (447)
T ss_pred EccCCCceEeC
Confidence 98777899875
No 16
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=100.00 E-value=3e-57 Score=436.86 Aligned_cols=373 Identities=35% Similarity=0.519 Sum_probs=322.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+.++.++++||||+++++ ++.|..+..+.++.+.+..+....+++.++.+++....
T Consensus 38 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~ 116 (411)
T TIGR00857 38 LPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQ 116 (411)
T ss_pred ecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCc
Confidence 69999999999876666788899999999999999999999 77777777888888887777777899998887765432
Q ss_pred -cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 -YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 -~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
+.+.++.++.+.|+.+ |+|..+ +.+..+++.+.+++++++++|+++.+|+++++.+...+... +......
T Consensus 117 ~~~l~e~~~l~~~Gv~g-~~f~~~----~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~----g~~~~~~ 187 (411)
T TIGR00857 117 GKELTEAYELKEAGAVG-RMFTDD----GSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHE----GPSAAQL 187 (411)
T ss_pred cccHHHHHHHHHCCcEE-EEEEeC----CcccCCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcC----CcccHhh
Confidence 2456677777789998 333222 22346789999999999999999999999987655443322 2234566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
++..||+.+|..++.+++++++.+ ++++|++|+|+. +++++++.+|++|++++|++|||||+++.+++...+
T Consensus 188 ~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~Hvs~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~ 259 (411)
T TIGR00857 188 GLPARPPEAEEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLD 259 (411)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCC
Confidence 788999999999999999999876 899999999998 899999999999999999999999999998876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++.+||+++.+|.+++|+|||+|+....|. .+|+.++.|+++++..++.+++.+.+.+++++++
T Consensus 260 ~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~ 336 (411)
T TIGR00857 260 GNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKT---KEFAAAPPGIPGLETALPLLLQLLVKGLISLKDL 336 (411)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999999999999999999999999999999876664 3688999999999999999988777667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|++++|+|++|+.|||++||.+.+|.++.+ ++.++.. |+||+|.++.|+|..||++|++||+|
T Consensus 337 ~~~~t~~pa~~~g~~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 337 IRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTINAE-TFYSKAK-NTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred HHHHhHHHHHHhCCCCCCccCCCCcCCEEEEcCCCCEEEchH-HCccCCC-CCCcCCCEEEeEEEEEEECCEEEecC
Confidence 999999999999996569999999999999999999999887 7888887 99999999999999999999999975
No 17
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=9.7e-58 Score=428.53 Aligned_cols=333 Identities=37% Similarity=0.601 Sum_probs=294.3
Q ss_pred CCceeecccccCCCCCC-ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 1 MPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~-~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
+||+||+|+|+++|+.. ++|++.+++++|+++|||||+||| |+.|..++.+.++.+.+.++.++.++++++...+..
T Consensus 4 lPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~- 81 (337)
T cd01302 4 LPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIGPG- 81 (337)
T ss_pred cCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEeccCc-
Confidence 79999999999999887 899999999999999999999999 888888889999988888777778999998776553
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
+.++++.++.+.|+.++|+|+.+... ..+..+++++.++++.+++.|+++.+|++.
T Consensus 82 -~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~Er---------------------- 137 (337)
T cd01302 82 -DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAER---------------------- 137 (337)
T ss_pred -cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHHH----------------------
Confidence 25667888888899999999865421 112568899999999999999999999881
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
++.+++++ +.++|++|+++. +++++++.+|++|+++++++||||++++.+++...+
T Consensus 138 ----------------~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~ 193 (337)
T cd01302 138 ----------------AAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNG 193 (337)
T ss_pred ----------------HHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCC
Confidence 12344444 889999999998 899999999999999999999999999988776677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++++||+++++|.+++|+|||+|++...|..+ .+|+.++.|+++++..++.+++...+.+++++++
T Consensus 194 ~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~~~~ 272 (337)
T cd01302 194 AWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKRGLSLETL 272 (337)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHH
Confidence 889999999999999999999999999999999999987776432 3689999999999999999988877788999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
++++|.|||+++|+.++|+|++|++|||+|||++..|+++.+ +++++.. |+||+|++++|+|.+|
T Consensus 273 ~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t 337 (337)
T cd01302 273 VEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAE-EIESKAD-WTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHH-HhcccCC-CCCcCCcEEEEEEEEC
Confidence 999999999999995579999999999999999999999998 8899988 9999999999999875
No 18
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=3.7e-57 Score=439.26 Aligned_cols=380 Identities=29% Similarity=0.471 Sum_probs=318.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++..+++++.+++++++++||||+++|| ++.|..++.+.+..+.+.++..+.+++.++.+....+.
T Consensus 55 ~PG~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 133 (444)
T PRK09060 55 LPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA 133 (444)
T ss_pred ccCEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH
Confidence 69999999999988888889999999999999999999999 88787788888888877776667899988765543332
Q ss_pred cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh--hhhccCcCCcccc
Q 015182 81 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH--VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~--~~~~~~~~~~~~~ 157 (411)
.++.++.. .|+.++|.|+++.. ......+...+.+++++ .|+++.+||++...+... +.. .+ ..
T Consensus 134 ---~~l~el~~~~gv~g~k~fm~~~~-~~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~~~~~~----~g--~~ 200 (444)
T PRK09060 134 ---DELAELERLPGCAGIKVFMGSST-GDLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRERKGLRV----EG--DP 200 (444)
T ss_pred ---HHHHHHHhhcCceEEEEEeccCC-CCcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHHHh----cC--Cc
Confidence 33444322 48999999986432 12223455667777654 489999999997754421 111 11 33
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc-cC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IP 236 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~-~~ 236 (411)
..+...||..+|..++.+++++++++ +.++|++|+++. +++++++.+++ .++|++||||++++.+. +.
T Consensus 201 ~~~~~~~p~~aE~~av~~~~~la~~~-------~~~lhi~h~st~-~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~ 269 (444)
T PRK09060 201 SSHPVWRDEEAALLATRRLVRLARET-------GRRIHVLHVSTA-EEIDFLADHKD---VATVEVTPHHLTLAAPECYE 269 (444)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhCC---CeEEEeChHHhccCchhhcc
Confidence 45667899999999999999999977 899999999998 89999987764 38999999999999876 55
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 316 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 316 (411)
.++...+++||+|+..++++||+++++|++++++|||+|+...+|. .+|+.+++|++++++.++.+++.+.+.++++
T Consensus 270 ~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~ 346 (444)
T PRK09060 270 RLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA---KPYPASPSGMTGVQTLVPIMLDHVNAGRLSL 346 (444)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhc---CCcccCCCCcccHHHHHHHHHHHHHcCCCCH
Confidence 6678899999999999999999999999999999999999987774 3788999999999999999987655556999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||++||++++|+|++|++|||||||++..|.++.+ .++++.. |+||.|.++.|+|.+||++|++||++
T Consensus 347 ~~~~~~~s~~pa~~~gl~~~G~l~~G~~ADlvl~d~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~~~~tiv~G~~v~~~ 424 (444)
T PRK09060 347 ERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE-WIASRCG-WTPYDGKEVTGWPVGTIVRGQRVMWD 424 (444)
T ss_pred HHHHHHHhHhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEEChH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEEC
Confidence 999999999999999996689999999999999999999999988 8888888 99999999999999999999999999
Q ss_pred CcccCCCCCccccC
Q 015182 397 GNHAPAACGSPILA 410 (411)
Q Consensus 397 g~~~~~~~g~~~~~ 410 (411)
|+++..+.|+.+++
T Consensus 425 g~~~~~~~G~~~~~ 438 (444)
T PRK09060 425 GELVGPPTGEPVRF 438 (444)
T ss_pred CEEccCCCccCccc
Confidence 99987778998875
No 19
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=7.3e-57 Score=442.62 Aligned_cols=395 Identities=28% Similarity=0.434 Sum_probs=328.1
Q ss_pred CCceeecccccCCCC--CCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~--~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+. ...+++++++++.++++||||++||+ ++.+.....+.++...........+++.++......
T Consensus 48 ~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 126 (459)
T PRK08323 48 MPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFA-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDW 126 (459)
T ss_pred eccEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCc-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCC
Confidence 699999999998763 35688899999999999999999998 555555556667666555555667787766543322
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.++++.++++.|+.++|+++++. +...++++++.++++.|+++|.++.+|+++...+.....+.. ..+.....
T Consensus 127 ~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~ 202 (459)
T PRK08323 127 NEVVLDEMPELVEEGITSFKLFMAYK---GALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPE 202 (459)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChh
Confidence 33346677788888999999998764 224678999999999999999999999987665443221110 11233444
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC-
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD- 237 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~- 237 (411)
.+...+|..+|..++.+++++++.+ +.++|++|+++. +++++++.+|++|+.+++++||||++++.++++.
T Consensus 203 ~~~~~~p~~~e~~~v~~~~~~a~~~-------~~~~~i~H~s~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~ 274 (459)
T PRK08323 203 YHALSRPPEVEGEATNRAIMLAELA-------GAPLYIVHVSCK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGP 274 (459)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCC
Confidence 5677899999999999999999876 889999999998 8999999999999999999999999999887754
Q ss_pred ---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhc-ccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 238 ---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL-DEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 238 ---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
.+...+++||+|+..++.+||+++++|.+++|+|||+|++..+|.. +..+|+.+|.|+++.+..++.+++... ..
T Consensus 275 ~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~ 354 (459)
T PRK08323 275 DWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTG 354 (459)
T ss_pred ccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcC
Confidence 3677899999999999999999999999999999999998777642 334688899999999999999986544 44
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|+
T Consensus 355 ~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~s~~~g~~~~g~v~~viv~G~ 432 (459)
T PRK08323 355 RITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISAS-TLHSNVD-YNPYEGFEVTGWPVTTLSRGE 432 (459)
T ss_pred CCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCCcccccCHH-HHhhcCC-CCcccCcEEeeeEEEEEECCE
Confidence 599999999999999999999 7789999999999999999999999988 8888887 999999999999999999999
Q ss_pred EEEEcCcccCC-CCCccccC
Q 015182 392 LVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 392 ~v~~~g~~~~~-~~g~~~~~ 410 (411)
+||++|+++.. +.|++|+.
T Consensus 433 ~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 433 VVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred EEEECCEEeccCCCceEeeC
Confidence 99999999865 47998875
No 20
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=1.3e-56 Score=436.71 Aligned_cols=389 Identities=27% Similarity=0.405 Sum_probs=325.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+ ++.|..+..+.+..+.+..+....++++++.+.+.
T Consensus 53 ~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p-~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 128 (444)
T PRK09236 53 LPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATN--- 128 (444)
T ss_pred CCCEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC-CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCc---
Confidence 69999999999988777788999999999999999999999 88787788888888777766667889988865432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC-cccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD-TRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (411)
..++++.++.+.|+.++|+|+.+.. ......+.+.++++++ ..|+++++|+++...+...........+ ......
T Consensus 129 ~~~~e~~~l~~~g~~g~k~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~ 204 (444)
T PRK09236 129 DNLDEIKRLDPKRVCGVKVFMGAST-GNMLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEM 204 (444)
T ss_pred ccHHHHHHHHHccCcEEEEEeccCC-CCcccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhh
Confidence 2456677777789999999986432 1122334556666654 4589999999987654322110000001 112234
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.++++++++. +.++|+.|+++. ++++++++++..|.++++++||||++++++++...+
T Consensus 205 ~~~~rp~~ae~~av~~~~~la~~~-------~~~~hi~h~st~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~ 276 (444)
T PRK09236 205 HPLIRSAEACYKSSSLAVSLAKKH-------GTRLHVLHISTA-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLG 276 (444)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccC
Confidence 456899999999999999999876 889999999998 899999999888999999999999999998877778
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|...++..||+++++|++++|+|||+|+...+|. .+|+.++.|+++++..++.+++.+.+.+++++++
T Consensus 277 ~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~---~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~ 353 (444)
T PRK09236 277 NLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEKQ---GPYFQAPSGLPLVQHALPALLELVHEGKLSLEKV 353 (444)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHhc---CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHH
Confidence 8899999999999999999999999999999999999877664 4788999999999998998887777778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++|+|++|++|||+|||++.+|.++.+ +++++.. |+||+|.++.++|.+||++|++||++|++
T Consensus 354 ~~~~t~~pA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~ 431 (444)
T PRK09236 354 VEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE-NILYKCG-WSPFEGRTFRSRVATTFVNGQLVYHNGQL 431 (444)
T ss_pred HHHHHHhHHHhcCCCCCCccccCCcCCEEEEcCCCCEEEchH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEE
Confidence 999999999999996689999999999999999999999988 8888888 99999999999999999999999999999
Q ss_pred cCCCCCccccC
Q 015182 400 APAACGSPILA 410 (411)
Q Consensus 400 ~~~~~g~~~~~ 410 (411)
+..+.|+.|++
T Consensus 432 ~~~~~G~~~~~ 442 (444)
T PRK09236 432 VESCRGQRLEF 442 (444)
T ss_pred ccCcCceEeec
Confidence 87668999875
No 21
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=1.4e-56 Score=438.94 Aligned_cols=387 Identities=30% Similarity=0.449 Sum_probs=321.4
Q ss_pred CCceeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+.. .+++++++++++++++||||++||+ ++.|.....+.++...........+++.++......
T Consensus 50 lPGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 128 (447)
T cd01314 50 LPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFA-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDW 128 (447)
T ss_pred ecCEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCC-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCC
Confidence 6999999999987653 5688899999999999999999998 555545556667666555555566777666543332
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.++++.++.+.|+.++|+|+.+. +...++++.+++++++|+++|+++.+|+++...+.....+.- ..+.....
T Consensus 129 ~~~~~~~~~~l~~~g~~~ik~~~~~~---~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~ 204 (447)
T cd01314 129 TDSVIEELPELVKKGISSFKVFMAYK---GLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPE 204 (447)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeccC---CCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChH
Confidence 33345667777778899999998764 234568999999999999999999999977665443332110 11233344
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC--
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP-- 236 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~-- 236 (411)
.+...+|..+|..++.+++++++.+ +.++|++|+++. .++++++.+|++|+++++++||||++++.+++.
T Consensus 205 ~~~~~~p~~~e~~~v~~~~~la~~~-------~~~~~~~H~s~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~ 276 (447)
T cd01314 205 YHALSRPPEVEAEATARAIRLAELA-------GAPLYIVHVSSK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKD 276 (447)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccc
Confidence 5667899999999999999988765 889999999998 899999999999999999999999999988763
Q ss_pred C-CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CC
Q 015182 237 D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GV 314 (411)
Q Consensus 237 ~-~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l 314 (411)
. .+...+++||+|...++.+||+++++|++++|||||+|++...|.....+|+.+|.|+++++++++.+++..... .+
T Consensus 277 ~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~ 356 (447)
T cd01314 277 WFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRI 356 (447)
T ss_pred cccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCC
Confidence 2 567789999999999999999999999999999999999987776544579999999999999999999776544 59
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
+++++++++|.|||++||+ +++|+|++|++|||||||++.+|.++.+ .++++.. |+||.|.++.++|.+||++|++|
T Consensus 357 ~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v 434 (447)
T cd01314 357 TLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISAD-THHHNVD-YNIFEGMKVKGWPVVTISRGKVV 434 (447)
T ss_pred CHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHH-HhhccCC-CCcccCeEEeeeEEEEEECCEEE
Confidence 9999999999999999999 7789999999999999999999999987 7777777 99999999999999999999999
Q ss_pred EEcCcccCC
Q 015182 394 YKEGNHAPA 402 (411)
Q Consensus 394 ~~~g~~~~~ 402 (411)
|++|+++..
T Consensus 435 ~~~~~~~~~ 443 (447)
T cd01314 435 VEDGELVGE 443 (447)
T ss_pred EECCEEecc
Confidence 999999854
No 22
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=1.5e-56 Score=436.18 Aligned_cols=381 Identities=34% Similarity=0.483 Sum_probs=322.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++|+ ++.|.....+.++.+.+.+...+.+++.++.+..
T Consensus 53 ~PG~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~-~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~---- 127 (443)
T PRK02382 53 LPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT---- 127 (443)
T ss_pred cCCEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----
Confidence 69999999999988877888999999999999999999999 8888777778888877766666678887765432
Q ss_pred cchHHHHHHHHCCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 YNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
..++++.++.+.|+.++ |+|+.+.. .+ ...+++.+.++++.++++|+++.+|+++...+...... ..+......
T Consensus 128 ~~~~~l~~l~~~gv~~~gkv~~~~~~-~~-~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~ 202 (443)
T PRK02382 128 GNWDPLESLWERGVFALGEIFMADST-GG-MGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL---LKGDADADA 202 (443)
T ss_pred cchhhHHHHHhcCccceeEEEEEecC-CC-cccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhh
Confidence 22445677777788888 88875432 12 24577899999999999999999999987664432211 112223455
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++.++++. |.++|++|+++. ++++++++++ +++++|||||+++++++..++
T Consensus 203 ~~~~~p~~~E~~av~~~~~la~~~-------g~~~hi~h~ss~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~ 269 (443)
T PRK02382 203 WSAYRPAAAEAAAVERALEVASET-------GARIHIAHISTP-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLG 269 (443)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccC
Confidence 667899999999999999999976 899999999998 8999998653 899999999999998876667
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++++||+++.+|.+++|+|||+|++..+|. .+|+.+|.|++|+++.++.++..+.+.+++++++
T Consensus 270 ~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~ 346 (443)
T PRK02382 270 TFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKD---ADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERV 346 (443)
T ss_pred ceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhc---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHH
Confidence 7889999999999999999999999999999999999987775 4799999999999999999987766778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++|+|++|++|||+|||++..|.++.+ .++++.. |+||.|.+.. .|.+||++|++||++|++
T Consensus 347 ~~~~t~~pA~~~g~~~~G~l~~G~~AD~vi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~-~v~~tiv~G~~v~~~~~~ 423 (443)
T PRK02382 347 RDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGD-DLHSKAG-WTPFEGMEGV-FPELTMVRGTVVWDGDDI 423 (443)
T ss_pred HHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH-HhcccCC-CCCcCCCEec-eEEEEEECCEEEEECCEE
Confidence 999999999999997689999999999999999999999887 7888887 9999998866 899999999999999998
Q ss_pred cCCC-CCccccC
Q 015182 400 APAA-CGSPILA 410 (411)
Q Consensus 400 ~~~~-~g~~~~~ 410 (411)
+..+ .|+.++.
T Consensus 424 ~~~~~~G~~~~~ 435 (443)
T PRK02382 424 NAKRGRGEFLRG 435 (443)
T ss_pred ecCCCCceEeCC
Confidence 8664 6888864
No 23
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=3e-56 Score=425.31 Aligned_cols=352 Identities=30% Similarity=0.441 Sum_probs=295.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++|| ++.|..++.+.+..+.+.++..+.++++++. .+..
T Consensus 46 ~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~-- 121 (398)
T PRK04250 46 LPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG-- 121 (398)
T ss_pred ccCEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECC-CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC--
Confidence 69999999999887777888999999999999999999999 8888888999999888888878899999886 4433
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
.+.++.++.. .++|+|+.+.. + ....+.+... ++ +.+..+.+||++..... .
T Consensus 122 -~~~~l~~l~~---~~~k~f~~~~~--~--~~~~~~~~~~--~~-~~~~~v~~H~E~~~~~~-----------------~ 173 (398)
T PRK04250 122 -NCEKAEEIKA---DFYKIFMGAST--G--GIFSENFEVD--YA-CAPGIVSVHAEDPELIR-----------------E 173 (398)
T ss_pred -CHHHHHHHHh---hheEEEEecCC--C--chhHHHHHHH--HH-hcCCeEEEEecChhhhh-----------------c
Confidence 2334444432 25788875431 1 1122223222 23 33567999999876522 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCC-EEEEcccccccccccccCCCC
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~-i~~~~~p~~l~~~~~~~~~~~ 239 (411)
...||..+|..++.+++.+++.+ +.++|++|+|+. ++++++++ +|+. ++|++|||||+++.+++ .++
T Consensus 174 ~~~~p~~aE~~av~r~~~la~~~-------~~~lhi~HvSt~-~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~ 241 (398)
T PRK04250 174 FPERPPEAEVVAIERALEAGKKL-------KKPLHICHISTK-DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERN 241 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCC
Confidence 35789999999999999999976 999999999998 89998854 4886 99999999999998877 467
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+..++++||+++. .+++|+|||+|++..+|. ..++|++|+++.++.+++.+.+.+++++++
T Consensus 242 ~~~k~~PPLR~~~d~~aL~~~l~--~Id~i~sDHaP~~~~~k~-------~~~~G~~g~e~~lpl~~~~v~~~~lsl~~~ 312 (398)
T PRK04250 242 PLLKVYPPLRSEEDRKALWENFS--KIPIIASDHAPHTLEDKE-------AGAAGIPGLETEVPLLLDAANKGMISLFDI 312 (398)
T ss_pred CceEEcCCCCCHHHHHHHHHhhc--cCCEEEcCCcccCHHHhh-------cCCCCcchHHHHHHHHHHHHHhcCCCHHHH
Confidence 88999999999999999999995 499999999999987763 246899999999999998766667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++| |++|++|||+|||++..|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++|++
T Consensus 313 v~~~t~npAk~lgl~~~G-L~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~v~~tiv~G~~v~~~g~~ 389 (398)
T PRK04250 313 VEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAE-ELYTKAG-WTPYEGFKLKGKVIMTILRGEVVMEDDEI 389 (398)
T ss_pred HHHHHHHHHHHhCCCCcC-ccCCCcCCEEEEcCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEE
Confidence 999999999999996689 99999999999999999999988 7888887 99999999999999999999999999999
Q ss_pred cCCCCCccc
Q 015182 400 APAACGSPI 408 (411)
Q Consensus 400 ~~~~~g~~~ 408 (411)
+..+.|+.+
T Consensus 390 ~~~~~G~~~ 398 (398)
T PRK04250 390 IGKPRGVRI 398 (398)
T ss_pred cCCCCCeEC
Confidence 987788764
No 24
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=4.1e-56 Score=437.12 Aligned_cols=394 Identities=30% Similarity=0.449 Sum_probs=319.3
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+ +..+++++++++++++++||||++||+ ++.|.....+.++...+...+...+++.++......
T Consensus 50 lPGlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (454)
T TIGR02033 50 MPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFA-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHW 128 (454)
T ss_pred ecCEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCc-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCC
Confidence 69999999999876 356788999999999999999999999 665554556667666555555556777665433222
Q ss_pred CccchHH-HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASA-LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~-~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+.+.+ +..+.+.|+..+|+|+++. +...+++++++++++.|+++|+++.+|+++.........+.- ..+....
T Consensus 129 ~~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~ 204 (454)
T TIGR02033 129 NDEVLEEHIPELVEEGITSFKVFMAYK---NLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGP 204 (454)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEEeecC---CCCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCCh
Confidence 2222334 4445567889999998764 234578999999999999999999999977655433322110 1122333
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..|...+|..+|..++.+++.++..+ +.++|++|+++. .+++.++.+|+.|++++|++||||++++.+.+..
T Consensus 205 ~~~~~~~p~~~e~~~v~~~~~~~~~~-------~~~~~i~H~s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~ 276 (454)
T TIGR02033 205 EYHALSRPPESEAEAVARAIALAALA-------NAPLYVVHVSTA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDK 276 (454)
T ss_pred hHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcC
Confidence 44567789999999999999988765 889999999998 7899999999999999999999999998877643
Q ss_pred ---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhh-cccCCccccCCCCchhhhHHHHHHHHHHh-c
Q 015182 238 ---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQFVLPVTWSYGRK-Y 312 (411)
Q Consensus 238 ---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 312 (411)
.....+++||+|+..++++||+++.+|.++++||||+|++...|. ...++|+.+|+|+++.++.++.+++.... .
T Consensus 277 ~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~ 356 (454)
T TIGR02033 277 PGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATG 356 (454)
T ss_pred cccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999999999876662 11247888999999999999999876554 4
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++|||+|+|++.+|.++.+ .++++.. |+||.|+++.|+|.+||++|+
T Consensus 357 ~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~ 434 (454)
T TIGR02033 357 RITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAE-THHDNAD-YNPFEGFKVQGAVVSVLSRGR 434 (454)
T ss_pred CCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechH-HhhccCC-CCcccCeEEeeeEEEEEECCE
Confidence 599999999999999999999 6689999999999999999999999987 7778888 999999999999999999999
Q ss_pred EEEEcCcccCCC-CCcccc
Q 015182 392 LVYKEGNHAPAA-CGSPIL 409 (411)
Q Consensus 392 ~v~~~g~~~~~~-~g~~~~ 409 (411)
+||++|+++..+ .|++|+
T Consensus 435 ~v~~~g~~~~~~~~g~~~~ 453 (454)
T TIGR02033 435 VVVEDGQFVGTAGSGRFIK 453 (454)
T ss_pred EEEECCEEecCCCCcceec
Confidence 999999998654 598886
No 25
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-57 Score=407.78 Aligned_cols=394 Identities=29% Similarity=0.407 Sum_probs=336.8
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+||.||.|+|+.+| |.+.+++|.+++++|+++|+|.|+|++.. .+.....++|+.+++.++.+..+||+++++++++
T Consensus 65 iPGgID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp-~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W 143 (522)
T KOG2584|consen 65 IPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLP-DKGTSLVEAFEKWREWADPKVCCDYGLHVGITWW 143 (522)
T ss_pred ecCccCccceeccccCCccchhhhhcccHHHhcCCceEEEEEecC-CCCchHHHHHHHHHhhcCCceeeeeeeeEeeeec
Confidence 69999999999998 77899999999999999999999999843 3445778899999988888999999999999987
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+..++|.-+. +.|+.+||+||.|. +++++++++|.++++.+++.|-...+|+++.+.+.+..++.- ..+...-
T Consensus 144 ~~~v~eem~~l~~ekGvnsF~~fmayk---~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgP 219 (522)
T KOG2584|consen 144 SPSVKEEMEILVKEKGVNSFKFFMAYK---DLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGP 219 (522)
T ss_pred CcchHHHHHHHhhhcCcceEEeeeeec---cccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCc
Confidence 655445565554 47999999999986 557899999999999999999999999999988776654331 1112222
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
+-+..+||+..|.+++.+++.++.+. .+++.+.|+.+. .+.+.|..+|++|.-+..++....+..+...+..
T Consensus 220 Egh~lSRPee~EaEA~~rai~ia~~~-------ncPlyvvhVmsk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~ 291 (522)
T KOG2584|consen 220 EGHELSRPEELEAEATNRAITIARQA-------NCPLYVVHVMSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWS 291 (522)
T ss_pred ccccccCchhhhHHHHHHHHHHHHhc-------CCCcceEEEeeh-hHHHHHHHHHhcCceeecccchhhhcccchhhcc
Confidence 34567999999999999999999876 777888898887 7889999998888766666555556555443322
Q ss_pred ----CCcceEEcCCCCChh-hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 238 ----GDTRFKCAPPIRDAA-NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 238 ----~~~~~~~~p~lr~~~-~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
....+.+.||+|... ..+.||.+|..|.+-..+|||++++..+|.++.++|..+|.|++|++.+++..|......
T Consensus 292 ~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~ 371 (522)
T KOG2584|consen 292 KDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 371 (522)
T ss_pred CChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhccc
Confidence 246788899999865 789999999999999999999999999999999999999999999999999999877665
Q ss_pred C-CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 313 G-VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 313 ~-l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
| |++.+.+...+.|+|++|++ ++||+|++|.+|||||||++...+|+.+ +.++... ++.|+|++..|.|.-||.+|
T Consensus 372 G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~-th~~~~d-~NifEGm~~~G~plvtIsrG 449 (522)
T KOG2584|consen 372 GKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAK-THHSAND-FNIFEGMTVHGVPLVTISRG 449 (522)
T ss_pred CccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEeccc-ccccccc-ceeecCcEecceeEEEEeCC
Confidence 5 99999999999999999999 9999999999999999999999999988 7777777 99999999999999999999
Q ss_pred EEEEEcCccc-CCCCCcccc
Q 015182 391 NLVYKEGNHA-PAACGSPIL 409 (411)
Q Consensus 391 ~~v~~~g~~~-~~~~g~~~~ 409 (411)
|+||+||++. ..+.|++|-
T Consensus 450 riv~eng~~~v~~g~G~fip 469 (522)
T KOG2584|consen 450 RVVYENGNLVVTEGSGRFIP 469 (522)
T ss_pred eEEEecCcEEEecCCCceee
Confidence 9999999986 568898874
No 26
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=3.2e-55 Score=415.47 Aligned_cols=339 Identities=29% Similarity=0.386 Sum_probs=279.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++||.+++|++.+++++|++||||||+||| |+.|..++.+.++.+.+.+++++.++++++.+.+.
T Consensus 46 lPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP-nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~--- 121 (392)
T PRK00369 46 LPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTK--- 121 (392)
T ss_pred eCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccC---
Confidence 69999999999999999999999999999999999999999 88898899999999888888888999999876532
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
... ++.+.|+.++|.|.+ + ....+.+ +.+.+++.++.+||++...+... .
T Consensus 122 -~~~---el~~~~~~g~k~f~~-----~--~~~~~~~----~~~~~~~~~v~~HaE~~~l~~~~---------------~ 171 (392)
T PRK00369 122 -DPE---KVDKLPIAGYKIFPE-----D--LEREETF----RVLLKSRKLKILHPEVPLALKSN---------------R 171 (392)
T ss_pred -CHH---HHHHhhCceEEEECC-----C--CchHHHH----HHHHHhCCEEEEeCCCHHHhhcc---------------h
Confidence 222 333457889998852 1 1223334 33445558999999997654311 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
...+|..+|..++.++..+ .++|++|+|+. +++ +.+|++| ++|++|||||+++.+ .+.
T Consensus 172 ~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~-~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~ 229 (392)
T PRK00369 172 KLRRNCWYEIAALYYVKDY------------QNVHITHASNP-RTV---RLAKELG--FTVDITPHHLLVNGE----KDC 229 (392)
T ss_pred hcccCHHHHHHHHHHHHHh------------CCEEEEECCCH-HHH---HHHHHCC--CeEEechhHheeccC----CCC
Confidence 2358888888776555443 46999999998 554 4556666 789999999999875 256
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+.+++++||++|.+ +++|+|||+|+...+|. .+|+.+|+|++|+++.++.+++.+.+.++++++++
T Consensus 230 ~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~---~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v 304 (392)
T PRK00369 230 LTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL---QPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAV 304 (392)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc---CCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHH
Confidence 78999999999999999999998 99999999999987774 47999999999999999999986666679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++ .|.|++|++|||++||++ .|.+ + .++++.. |+||+|.++.|+|.+||++|++||++|++.
T Consensus 305 ~~~s~nPA~ilgl~-~g~i~~G~~ADlvi~d~~-~~~~--~-~~~sk~~-~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~ 378 (392)
T PRK00369 305 ELISTNPARILGIP-YGEIKEGYRANFTVIQFE-DWRY--S-TKYSKVI-ETPLDGFELKASVYATIVQGKLAYLEGEVF 378 (392)
T ss_pred HHHHHHHHHHhCCC-CCccCCCCccCEEEEeCC-ceeE--c-cccccCC-CCCCCCCEeeeEEEEEEECCEEEEECCeEe
Confidence 99999999999995 488999999999999998 6775 3 5578888 999999999999999999999999999988
Q ss_pred C-CCCCc
Q 015182 401 P-AACGS 406 (411)
Q Consensus 401 ~-~~~g~ 406 (411)
. ...|+
T Consensus 379 ~~~g~G~ 385 (392)
T PRK00369 379 PVKGINP 385 (392)
T ss_pred cCCCCCC
Confidence 4 33444
No 27
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=1.4e-54 Score=421.51 Aligned_cols=370 Identities=33% Similarity=0.487 Sum_probs=312.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|++.++..+.+++.++++.++++||||++||+ ++.|.....+.++.+.+.++..+.+++.++..++.. .
T Consensus 52 ~PG~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (423)
T PRK09357 52 APGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLA 130 (423)
T ss_pred eCCEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCC
Confidence 69999999999888777889999999999999999999999 777877777788877776666666777776554322 1
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++..+.+.|+.+++.+ +....+++.++++++.|+++|+++++|+++.......+.+.| ......
T Consensus 131 ~~~~~~~~~l~~~gv~~~~~~-------~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g----~~~~~~ 199 (423)
T PRK09357 131 GEELTEFGALKEAGVVAFSDD-------GIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEG----EVSARL 199 (423)
T ss_pred CccHHHHHHHHhCCcEEEECC-------CcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCC----hhhHHh
Confidence 234566666666777666532 223457899999999999999999999998765443222221 223345
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++.+++++ +.++|++|++.. +.+++++.++++|+.+++++||||++++.+++..++
T Consensus 200 ~~~~~p~~~E~~~i~~~~~la~~~-------g~~~hi~H~s~~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~ 271 (423)
T PRK09357 200 GLPGIPAVAEEVMIARDVLLAEAT-------GARVHICHVSTA-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYD 271 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcC
Confidence 667899999999999999999876 899999999998 899999999999999999999999999998776667
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~ 318 (411)
...+++||+|...++..||+++++|.++++||||+|++..+|. .+|+.++.|+++++..++.+++... +.++++++
T Consensus 272 ~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~ 348 (423)
T PRK09357 272 PNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE---CEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQ 348 (423)
T ss_pred CceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHcc---CCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH
Confidence 7889999999999999999999999999999999999877764 2688999999999999999887544 45699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++|.|||+++|++. |+|++|++|||+|+|++.+|+++.+ .++++.. |+||+|.++.|+|..||++|++||++
T Consensus 349 ~~~~~t~~~A~~~g~~~-G~i~~G~~AD~~i~d~~~~~~v~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 349 LLEKMTINPARILGLPA-GPLAEGEPADLVIFDPEAEWTVDGE-DFASKGK-NTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred HHHHHhHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCEEEchh-hcccCCC-CCCCcCCEEeeEEEEEEECCEEEecC
Confidence 99999999999999965 9999999999999999999999887 7888887 99999999999999999999999975
No 28
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=4.8e-54 Score=400.99 Aligned_cols=336 Identities=28% Similarity=0.454 Sum_probs=277.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|++||||||.||| |+.|..++.+.++.+.+.+++.+.++++++.+.+..+.
T Consensus 5 lPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~~~~ 83 (344)
T cd01316 5 LPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATSTNA 83 (344)
T ss_pred eCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecCCCH
Confidence 69999999999999999999999999999999999999999 88888889999999988887778999999977654432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
..+.++.. .+.++|+|+.+.. .... .++.........+...+.++.+|++..
T Consensus 84 ---~~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~---------------------- 135 (344)
T cd01316 84 ---ATVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ---------------------- 135 (344)
T ss_pred ---HHHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH----------------------
Confidence 23444433 3678999875421 1111 222222233334445578888887653
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
.+.+++++++.+ +.++|++|+|+. +++++++.+|++|++|+|++|||||+++.+++.. .
T Consensus 136 -----------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~--~ 194 (344)
T cd01316 136 -----------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR--G 194 (344)
T ss_pred -----------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc--C
Confidence 245567777766 899999999999 9999999999999999999999999999887644 4
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+..++++||+++. .+++|+|||+|+...+|.. + .+++|++|+++.++.+++.+.+.++++.+++
T Consensus 195 ~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~~v~~~~i~l~~l~ 267 (344)
T cd01316 195 QYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLTAVHEGRLTIEDIV 267 (344)
T ss_pred CceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHHHHHcCCCCHHHHH
Confidence 6899999999999999999994 5899999999998777631 2 6789999999999999986555679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||+.. + .+||+|+|++..|+++.+ .++++.. |+||+|++++|+|.+||++|++||++|++.
T Consensus 268 ~~~s~nPAk~~gl~~------~-~~~lvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~ti~rG~~v~~~g~~~ 338 (344)
T cd01316 268 DRLHTNPKRIFNLPP------Q-SDTYVEVDLDEEWTIPKN-PLQSKKG-WTPFEGKKVKGKVQRVVLRGETAFIDGEIV 338 (344)
T ss_pred HHHHHhHHHHhCCCC------C-CCCEEEEeCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEc
Confidence 999999999999832 2 337999999999999988 8888888 999999999999999999999999999987
Q ss_pred CC
Q 015182 401 PA 402 (411)
Q Consensus 401 ~~ 402 (411)
..
T Consensus 339 ~~ 340 (344)
T cd01316 339 AP 340 (344)
T ss_pred cC
Confidence 53
No 29
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=9.8e-54 Score=408.03 Aligned_cols=360 Identities=35% Similarity=0.493 Sum_probs=313.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|++.++...++++.+++++|+.+||||++||+ ++.|..++.+.++.+.+.++....+++.++++++....
T Consensus 13 lPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T cd01317 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLK 91 (374)
T ss_pred ecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCC
Confidence 69999999999998888899999999999999999999999 88888888999988887777666778877776654332
Q ss_pred c-chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 Y-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~-~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
. .++++.++.+.|+.++|.+ +++..+...+.++++.+++.|.++.+|+++...+.+.+.+ .+......
T Consensus 92 ~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~----~g~~~~~~ 160 (374)
T cd01317 92 GEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMN----EGKVASRL 160 (374)
T ss_pred cccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCcc----CChhhHHh
Confidence 2 3677888888899999953 2235678899999999999999999999987765544332 22345566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++++++++ +.++|++|+++. +.++.++++++.|+.++++++|||++++++++...+
T Consensus 161 ~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~~~ 232 (374)
T cd01317 161 GLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYD 232 (374)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhccC
Confidence 778899999999999999999976 899999999998 899999999999999999999999999998876677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~ 318 (411)
...+++||+|...++..||+++++|++++|+|||+|++...|. .+|+.++.|+++.+..++.+++...+. .+++++
T Consensus 233 ~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~---~~~~~~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~ 309 (374)
T cd01317 233 TNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKD---LPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPD 309 (374)
T ss_pred CceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhhCCCcHhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 8889999999999999999999999999999999999877664 368889999999999999988776554 489999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
+++++|.|||+++|+. .|+|++|++|||+++|++.+|.+..+ .++++.. |+||+|+++.|+|.+|
T Consensus 310 ~~~~~t~npA~~lgl~-~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~G~~l~g~~~~t 374 (374)
T cd01317 310 LIRALSTNPAKILGLP-PGRLEVGAPADLVLFDPDAEWIVDEE-TFRSKSK-NTPFDGQKLKGRVLAT 374 (374)
T ss_pred HHHHHHHHHHHHhCCC-CCcccCCCcCCEEEECCCCCEEEChh-hccccCC-CCCCCCCEEeEEEEEC
Confidence 9999999999999996 49999999999999999999999998 8888888 9999999999999775
No 30
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=5.1e-44 Score=336.14 Aligned_cols=321 Identities=18% Similarity=0.212 Sum_probs=246.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPEN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (411)
+||+||+|+|++++ +++.+++++|.++| |++++|| ++.|+.++.+.+..+........ .+++.++.++....
T Consensus 3 ~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 75 (335)
T cd01294 3 IPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTE 75 (335)
T ss_pred CCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccC
Confidence 69999999999974 78889999999999 9999999 88787777776666655554444 46666655442211
Q ss_pred ccchHHHHHHHHC-CceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~-g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
....+++.++.+. |+.|+|+|+..... .+....+.+.+..+++.+.++|++|.+||++.....
T Consensus 76 ~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~--------------- 140 (335)
T cd01294 76 NTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI--------------- 140 (335)
T ss_pred CCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc---------------
Confidence 1235677777776 99999998742111 112223568999999999999999999999865311
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
.+...|...+.+++.+++++ ++.++|++|+++. +++++++++|+ +|++|+|||||+++.+++..
T Consensus 141 ------~~~~~e~~~~~~~~~lA~~~------p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~ 204 (335)
T cd01294 141 ------DVLDREAKFIPVLEPLAQRF------PKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLLG 204 (335)
T ss_pred ------cchhhHHHHHHHHHHHHHHc------CCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhcC
Confidence 01112233456677777753 3899999999998 89999988764 79999999999999887654
Q ss_pred --CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 015182 238 --GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 314 (411)
Q Consensus 238 --~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 314 (411)
++...+++||||+.+++++||+++.+|.++ +|+|||+|++..+|. .++. ..|+.+++..++.++... ++++
T Consensus 205 ~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~---~~~g--~~Gi~~~~~~l~~~~~~~-~~~l 278 (335)
T cd01294 205 GGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKE---SSCG--CAGIFSAPIALPYLAEVF-EEHN 278 (335)
T ss_pred CCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCcccc---CCCC--CccccCHHHHHHHHHHHH-hccC
Confidence 588899999999999999999999999999 599999999977764 2332 236666666777776444 3589
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCc
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 377 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~ 377 (411)
++++++++++.||||+||+ +.+|+ |++++ .+|+++.+ .+.++.. |+||+|-
T Consensus 279 ~l~~~v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~-~~~s~~~-~sp~~g~ 330 (335)
T cd01294 279 ALDKLEAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEK-IPFGNNG-VVPFRAG 330 (335)
T ss_pred CHHHHHHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCch-hccCCCc-eecccCC
Confidence 9999999999999999999 65555 55555 68999988 8889888 9999974
No 31
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=100.00 E-value=9.5e-41 Score=311.61 Aligned_cols=326 Identities=18% Similarity=0.207 Sum_probs=254.0
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (411)
|---|+|+|+++.++ ...+.-+...|||++++|| ++.|..++.+.+..+.+.+.... .+++.+++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~------~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~ 77 (341)
T TIGR00856 5 RRPDDWHLHLRDGAM------LKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTD 77 (341)
T ss_pred cCccceeeeccCchH------HHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCC
Confidence 445699999997643 3445556778899999999 88888777888887777666555 36888887775433
Q ss_pred ccchHHHHHHHHC-CceEEEEeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccc
Q 015182 80 AYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRS 156 (411)
Q Consensus 80 ~~~~~~~~~~~~~-g~~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~ 156 (411)
...++++.++.+. |+.++|+|+...+.. ++...+++.+.+++++++++|+++.+|+++.. .+.. .
T Consensus 78 ~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~-~----------- 145 (341)
T TIGR00856 78 SLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI-F----------- 145 (341)
T ss_pred CCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc-c-----------
Confidence 3356778887766 999999997543221 23344568999999999999999999999852 1110 0
Q ss_pred cccccCCCCHHHHHHHHH-HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 157 YSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
..|..++. .+..++.+. .+.++|++|+++. ++++++++++. ++++++|||||+++.+++
T Consensus 146 ----------~~e~~a~~~~i~~lA~~~------~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~~~~ 205 (341)
T TIGR00856 146 ----------DREARFIESVLEPLRQRF------PALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTRNDL 205 (341)
T ss_pred ----------cchhhhhHHHHHHHHHHc------cCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccHHHH
Confidence 00222233 333444432 3889999999998 89999988753 399999999999999877
Q ss_pred CC--CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 236 PD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 236 ~~--~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
.. ++...+++||+|+..++++||+++.+|.++ +|+|||+|++..+|.. +.++.|++++++.++.++..+ +.
T Consensus 206 ~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~~-~~ 279 (341)
T TIGR00856 206 LGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEVF-EE 279 (341)
T ss_pred hccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHHH-hc
Confidence 54 578899999999999999999999999999 6999999999877642 247899999999999887654 45
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKV 383 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v 383 (411)
+++++++++++|.||||+||++ +| +|||+|++ ..|+++.+ .++++.. |+|| .|.+++++|
T Consensus 280 ~~~l~~~v~~~s~nPAk~~gl~-~~------dAdi~~~~--~~~~i~~~-~~~s~~~-~sp~~~~~~~~~~v 340 (341)
T TIGR00856 280 MNALENLEAFCSDNGPQFYGLP-VN------STKIELVK--KEQQIPES-IALTDDT-LVPFRAGETLSWSV 340 (341)
T ss_pred CCCHHHHHHHHhHhHHHHhCCC-CC------CceEEEEe--ccEEeCch-hccCCCC-cccccCCcccceee
Confidence 8999999999999999999994 34 89999994 68999998 8889888 9999 577777766
No 32
>PRK09061 D-glutamate deacylase; Validated
Probab=100.00 E-value=4.8e-41 Score=330.32 Aligned_cols=343 Identities=22% Similarity=0.242 Sum_probs=253.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec----
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV---- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (411)
+|||||+|+|...++ ..+.++++||||++++..+..|. ...+....+....+|++++.+.+
T Consensus 70 ~PG~ID~H~H~~~~~---------~~~~~~~~GvTtvv~~~~~~~p~------~~~~~~~~~~~~~vn~~~~~~~~~~R~ 134 (509)
T PRK09061 70 APGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAGVLPV------ARWYAEQAGEGRPLNYGASVGWTPARI 134 (509)
T ss_pred ecCeEeeeeCCCCCc---------cchhhccCCceeEEeeccCCCCH------HHHHHHHHhcCCcceeehhcCcHHHHH
Confidence 699999999987543 25677999999999984233221 11222222333357887765543
Q ss_pred ---C-------------------C-----CccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 77 ---P-------------------E-----NAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 77 ---~-------------------~-----~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
. . +.+++.+|.+++ +.|+.++|.+..|. +..+.+++.++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~-----p~~~~~eL~~l~~~A~ 209 (509)
T PRK09061 135 AVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLEQGLDEGALGIGIGAGYA-----PGTGHKEYLELARLAA 209 (509)
T ss_pred HHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCccC-----CCCCHHHHHHHHHHHH
Confidence 1 0 123456666665 48999999865543 2458899999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD---- 201 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~---- 201 (411)
++|.++.+|+++..... ...|..++.++++++++. |.++|++|+++
T Consensus 210 ~~g~~v~~H~e~~~~~~-----------------------~~~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~ 259 (509)
T PRK09061 210 RAGVPTYTHVRYLSNVD-----------------------PRSSVDAYQELIAAAAET-------GAHMHICHVNSTSLR 259 (509)
T ss_pred HcCCEEEEEecCcccCC-----------------------chhHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcc
Confidence 99999999999854311 123456788999999876 88999999998
Q ss_pred --hHHHHHHHHHHhHCCCCEEEEccccc--------ccccccccCCCCcce---EE---cCCCCC---------------
Q 015182 202 --ASSSLDLLMEAKTNGDSITVETCPHY--------LAFSAEEIPDGDTRF---KC---APPIRD--------------- 250 (411)
Q Consensus 202 --~~~~~~~i~~~~~~g~~i~~~~~p~~--------l~~~~~~~~~~~~~~---~~---~p~lr~--------------- 250 (411)
. +.+++++++++.|++++++++||+ ++++.+....++... ++ .||||+
T Consensus 260 ~~~-~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 338 (509)
T PRK09061 260 DID-RCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGL 338 (509)
T ss_pred cHH-HHHHHHHHHHHcCCcEEEEecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCe
Confidence 6 678999999999999999999999 666544333333332 55 899988
Q ss_pred ----------hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh------hHHHHHHHHHHh-c-
Q 015182 251 ----------AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ------FVLPVTWSYGRK-Y- 312 (411)
Q Consensus 251 ----------~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~-~- 312 (411)
..+++.+++.+.++.+ +++|||+|+....|. ++|..++.++.+.+ ..++..++.+.. .
T Consensus 339 ~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~ 414 (509)
T PRK09061 339 VLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTWSDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERK 414 (509)
T ss_pred EEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccccccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcc
Confidence 4557889999998877 999999999866663 46777777776555 566666665443 3
Q ss_pred CCCHHHHHHHHhHhHHHHhC-----CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 313 GVTLEQLASWWSERPAKLAG-----QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg-----~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
.+|++++++++|.+||++|| ++++|+|++|+.|||+|||++.. .+.. .+.+ . ++|+.| |.+||
T Consensus 415 ~isl~~ai~~~T~~pA~~lg~~~~~l~~~G~i~~G~~ADlvv~D~~~~--~~~~-~~~~--~-~~~~~g------i~~v~ 482 (509)
T PRK09061 415 ALSLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVVFDPETI--TDRA-TFED--P-NRPSEG------VRHVL 482 (509)
T ss_pred cCCHHHHHHHHHHHHHHHhccccccccCCEeeCCCCCcCEEEEchhhc--cccc-cccc--c-CCCCCC------ceEEE
Confidence 49999999999999999999 75579999999999999998852 2222 2211 1 456554 88999
Q ss_pred ECCEEEEEcCccc-CCCCCccccC
Q 015182 388 SRGNLVYKEGNHA-PAACGSPILA 410 (411)
Q Consensus 388 ~~G~~v~~~g~~~-~~~~g~~~~~ 410 (411)
++|++||++|+++ ...+|+.||.
T Consensus 483 v~G~~v~~~g~~~~~~~~G~~lr~ 506 (509)
T PRK09061 483 VNGVPVVSNGELVRDARPGRPVRR 506 (509)
T ss_pred ECCEEEEECCEecCCCCCCeEecC
Confidence 9999999999985 6789999985
No 33
>PRK05451 dihydroorotase; Provisional
Probab=100.00 E-value=5.2e-40 Score=308.40 Aligned_cols=324 Identities=18% Similarity=0.189 Sum_probs=243.1
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC--CceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (411)
|--||+|||+++. ..++ ++.++++ .++|++++|| ++.|..++.+.++.+.+.+.+. ..+++.++++++...
T Consensus 8 ~~~~d~h~hl~~~-~~~~-~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~ 80 (345)
T PRK05451 8 RRPDDWHLHLRDG-AMLK-AVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTD 80 (345)
T ss_pred cCcceEEEecCCc-hHHH-HHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCC
Confidence 5679999999974 3333 5655555 4599999999 8878777888888877766554 336777766665443
Q ss_pred ccchHHHHHHHHCCc-eEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNAGV-LGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~-~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
...++++.++.+.|+ .++|+|+.+... .+....+++.+..+++.++++|++|.+||++.......
T Consensus 81 ~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~------------- 147 (345)
T PRK05451 81 NTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI------------- 147 (345)
T ss_pred CCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccccc-------------
Confidence 334677888888895 599999864211 11122377899999999999999999999984321000
Q ss_pred ccccCCCCHHHHHHHHHHH-HHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 158 STYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
.. .|...+.+. .++++++ ++.++|++|+++. +.+++++++ +.+|++|+|||||+++.+++.
T Consensus 148 ----~~----~e~~~~~~~l~~lA~~~------pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~~~~ 209 (345)
T PRK05451 148 ----FD----REAVFIDRVLEPLRRRF------PKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRNDML 209 (345)
T ss_pred ----cc----chHHHHHHHHHHHHHhc------CCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHHHHh
Confidence 00 012233333 3366543 3889999999998 899988776 468999999999999987764
Q ss_pred --CCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHHH
Q 015182 237 --DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYGR 310 (411)
Q Consensus 237 --~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~ 310 (411)
..+...+++||||+.+++++||++|.+|.++ +|+|||+|++..+|. .+.|.++++. .++.++..+.
T Consensus 210 ~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~~~~~~ 281 (345)
T PRK05451 210 VGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELYAEVFE 281 (345)
T ss_pred CCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHHHHHHH
Confidence 3467799999999999999999999999999 799999999977763 2345555554 4555555544
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEEE
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 384 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~ 384 (411)
. +.++++++++++.|||++||+ ++||+|.+| +.+|+++.+ .++++.. |+|| .|.+++++|.
T Consensus 282 ~-~~~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~-~~~s~~~-~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 282 E-AGALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPES-IPFGDET-VVPFRAGETLRWSVK 344 (345)
T ss_pred c-CCCHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcc-cccCCCc-eeeecCCceeeeEec
Confidence 4 349999999999999999999 889999777 568999988 8888888 9999 6777777764
No 34
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=100.00 E-value=6.7e-39 Score=309.92 Aligned_cols=312 Identities=24% Similarity=0.303 Sum_probs=224.6
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCH------------------------HHHHH
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------------------------ETLKL 56 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~------------------------~~~~~ 56 (411)
+|||||+|+|+..+... ..+++.++++||||+++++.++.|..... +.+..
T Consensus 52 ~PG~iD~H~H~~~~~~~-----~~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (415)
T cd01297 52 APGFIDVHTHYDGQVFW-----DPDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAE 126 (415)
T ss_pred ccCEeeeeecCCccccc-----CcchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHH
Confidence 69999999999875432 23478899999999999873333333222 44455
Q ss_pred HHHHHhcC-CceEEE---EEeeecC---------CCccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHH
Q 015182 57 KVDAAEKR-IYVDVG---FWGGLVP---------ENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKE 119 (411)
Q Consensus 57 ~~~~~~~~-~~~~~~---~~~~~~~---------~~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~ 119 (411)
+.+..+.. ..+++. ++..+.. .+.+++.+|.+++ +.|+.++|.++.|.. + ...+.+++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~--~-~~~~~~~l~~ 203 (415)
T cd01297 127 YLDALEARPPAVNVAALVGHAALRRAVMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAP--R-LYAGTAELVA 203 (415)
T ss_pred HHHHHHhcCCCcCeeeccCcHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCC--c-ccCCHHHHHH
Confidence 55555333 478887 4443331 1224466676664 679999998876531 1 1468899999
Q ss_pred HHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcC
Q 015182 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 199 (411)
Q Consensus 120 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~ 199 (411)
+++.|+++|.++.+|+++... .|..++.+++++++++ +.|+|++|+
T Consensus 204 ~~~~a~~~g~~v~~H~e~~~~---------------------------~e~~av~~~~~~a~~~-------g~r~~i~H~ 249 (415)
T cd01297 204 LARVAARYGGVYQTHVRYEGD---------------------------SILEALDELLRLGRET-------GRPVHISHL 249 (415)
T ss_pred HHHHHHHcCCEEEEEECcccc---------------------------cHHHHHHHHHHHHHHh-------CCCEEEEEE
Confidence 999999999999999998642 1335688888888876 889999999
Q ss_pred CChHHH---------HHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 200 SDASSS---------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 200 ~~~~~~---------~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
++. .. ++++++++++|++++++++|+++++ ...++++++ +.+++++
T Consensus 250 ss~-~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~-----------------------~~~~~~l~~-~~~~~i~ 304 (415)
T cd01297 250 KSA-GAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS-----------------------EDDVRRIMA-HPVVMGG 304 (415)
T ss_pred ecC-CCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc-----------------------HHHHHHHHc-CCCceee
Confidence 987 67 8999999999999999999977643 122233333 4899999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hhc-CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 348 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~-~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlv 348 (411)
|||+|.+. +....+ + .++.++..+ ... .++++++++++|.|||++||++++|+|++|++||||
T Consensus 305 SDh~~~~~--------~~~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlv 369 (415)
T cd01297 305 SDGGALGK--------PHPRSY-G------DFTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIV 369 (415)
T ss_pred eCCCcCCC--------CCcchh-C------CHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEE
Confidence 99998641 011111 1 144455433 334 499999999999999999999657999999999999
Q ss_pred EEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCCCCc
Q 015182 349 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGS 406 (411)
Q Consensus 349 v~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~~g~ 406 (411)
|||++.....+. ++++.. ....|.+||++|++||++|+++..++|+
T Consensus 370 v~d~~~~~~~~~----------~~~~~~--~~~~v~~viv~G~~v~~~~~~~~~~~G~ 415 (415)
T cd01297 370 VFDPDTLADRAT----------FTRPNQ--PAEGIEAVLVNGVPVVRDGAFTGARPGR 415 (415)
T ss_pred EEcccccccccc----------hhhhcc--CCCCceEEEECCEEEEECCEECCCCCCC
Confidence 999885433222 222211 1346999999999999999999888885
No 35
>PLN02599 dihydroorotase
Probab=100.00 E-value=5e-36 Score=279.93 Aligned_cols=291 Identities=20% Similarity=0.213 Sum_probs=220.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC--CceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (411)
|---|+|+|+++.. +....--+.++|+|++++|| |+.|+.++.+.++.+++++... ..+++.+++++....
T Consensus 26 ~~~~d~h~hlr~~~------~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~lt~ 98 (364)
T PLN02599 26 TRPDDWHLHLRDGA------KLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTD 98 (364)
T ss_pred cCCcceeeEccCcH------HHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEecCC
Confidence 44569999999753 33445556899999999999 8889999999999888777666 458999887662221
Q ss_pred ccchHHHHHHHHCCce-EEEEeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
...++++.++.+.|+. +||+|+...+.+ +....+.+.+..+++++++.|+++.+|+++.+......
T Consensus 99 ~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~------------ 166 (364)
T PLN02599 99 NTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF------------ 166 (364)
T ss_pred CCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccccc------------
Confidence 1346778888888998 999998643322 22233468999999999999999999999854311000
Q ss_pred ccccCCCCHHHHHHHHHHHHH--HHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 158 STYLKTRPPSWEEAAIRELLT--VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
.+ |...+.++++ +++. .+.++|++|+|+. ++++++++++. + ++++++|||||+++.+++
T Consensus 167 -----~~----E~~~i~r~l~~~la~~-------~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~~~~~ 227 (364)
T PLN02599 167 -----DR----EKVFIDTILAPLVQKL-------PQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLNRNAL 227 (364)
T ss_pred -----cc----HHHHHHHHHHHHHHhc-------cCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcCHHHH
Confidence 01 2223445552 4443 4899999999998 89999998874 3 799999999999998876
Q ss_pred C--CCCcceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHH
Q 015182 236 P--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYG 309 (411)
Q Consensus 236 ~--~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~ 309 (411)
. .+++..+++||+|+..++++||+++.+|.+ ++|+|||+|++...|. .++|.+|++. .++.+....
T Consensus 228 ~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~~~~~l~~l~~~~ 299 (364)
T PLN02599 228 FQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYSAPVALSLYAKAF 299 (364)
T ss_pred hccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCcccHHHHHHHHHHHH
Confidence 5 346778999999999999999999999996 7999999999876663 2345555543 577655555
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCC-CCCcc
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQV-SKGAI 339 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~-~~G~I 339 (411)
.+.+ +++++++.+|.|||+++|++ ++|+|
T Consensus 300 ~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 300 EEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 5556 99999999999999999994 67764
No 36
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=100.00 E-value=1.2e-31 Score=255.38 Aligned_cols=311 Identities=24% Similarity=0.278 Sum_probs=208.0
Q ss_pred CCceeecccccC----CCC----CCccCChHHHHHHHHcCCceeEecCCCCCC-C--C---CCCHHHHHHHHH--HHhcC
Q 015182 1 MPGLIDVHAHLD----DPG----RTEWEGFPSGTKAAAAGGITTLIDMPLNSD-P--S---TISTETLKLKVD--AAEKR 64 (411)
Q Consensus 1 lPGlID~H~H~~----~~~----~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~-~--~---~~~~~~~~~~~~--~~~~~ 64 (411)
+|||||+|+|.. .|. +...+++.+++++++++||||+.||..+.. | . ....+.+..+.+ ...++
T Consensus 51 ~PG~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
T PRK15446 51 LPGLVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGL 130 (383)
T ss_pred EeCeEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCc
Confidence 699999999543 232 123378999999999999999999852332 2 1 111123334444 34467
Q ss_pred CceEEEEEeeecCCCccchHHHHHHHHCCceEEEEeccCC-CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh
Q 015182 65 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 143 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 143 (411)
+.+|+++|..+...+.+.++++.++.+.|+.++|.||+.. +...++ ..+.+++.. +++.| .+|++......+
T Consensus 131 ~~vD~~~h~~~~~~~~~~~~~l~~~~~~g~~~~k~fm~~~p~~~~~~--~~~~~~~~~--~~~~g---~~~~e~~~~~~~ 203 (383)
T PRK15446 131 LRADHRLHLRCELTNPDALELFEALLAHPRVDLVSLMDHTPGQRQFR--DLEKYREYY--AGKYG---LSDEEFDAFVEE 203 (383)
T ss_pred hhccceeEEEEEecCcchHHHHHHHhcCCCcCEEEEeCCCCcccccc--CHHHHHHHH--HhhcC---CCHHHHHHHHHH
Confidence 7899999998865555667888889999999999999865 222222 334454444 45777 789888665432
Q ss_pred hhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEc
Q 015182 144 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223 (411)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~ 223 (411)
.. .+|...+...++.+++.+++. |.++ ..|... ..+.++.+++.|+.++ +
T Consensus 204 ~~-----------------~~~~~~~~e~i~~~v~~A~~~-------g~~v-~sH~~~---~~~~i~~a~~~Gv~~~-e- 253 (383)
T PRK15446 204 RI-----------------ALSARYAPPNRRAIAALARAR-------GIPL-ASHDDD---TPEHVAEAHALGVAIA-E- 253 (383)
T ss_pred HH-----------------HhHhhcCHHHHHHHHHHHHHC-------CCce-eecCCC---CHHHHHHHHHcCCcee-e-
Confidence 21 124444556788999999876 7777 568732 2246777878888665 2
Q ss_pred ccccccccccccCCCCcceEEc-C-CCCC--hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 224 CPHYLAFSAEEIPDGDTRFKCA-P-PIRD--AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 224 ~p~~l~~~~~~~~~~~~~~~~~-p-~lr~--~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
.|.....- ..+.+.+...... | ++|. ......+++++++|++++++||+.|...
T Consensus 254 ~~~~~e~~-~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~~--------------------- 311 (383)
T PRK15446 254 FPTTLEAA-RAARALGMSVLMGAPNVVRGGSHSGNVSALDLAAAGLLDILSSDYYPASL--------------------- 311 (383)
T ss_pred CCCcHHHH-HHHHHCCCEEEeCCcccccCCcccchHhHHHHHHCCCcEEEEcCCChhhH---------------------
Confidence 12111000 0111122222222 2 3454 3456788999999999999999865421
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
+...+......+++++++++++|.|||+++|++++|+|++|+.|||+|||.+. .
T Consensus 312 --~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~~G~I~~G~~ADlvv~d~~~------~------------------ 365 (383)
T PRK15446 312 --LDAAFRLADDGGLDLPQAVALVTANPARAAGLDDRGEIAPGKRADLVRVRRAG------G------------------ 365 (383)
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCcCcCCCCcCCEEEEcCCC------C------------------
Confidence 11223334566899999999999999999999556999999999999999761 1
Q ss_pred EeEEEEEEECCEEEEEc
Q 015182 380 SGKVLATISRGNLVYKE 396 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~ 396 (411)
...|..||++|++||+.
T Consensus 366 ~~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 366 LPVVRAVWRGGRRVFLA 382 (383)
T ss_pred CcchheEEECCEEEEeC
Confidence 01478899999999975
No 37
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=100.00 E-value=1.1e-31 Score=254.89 Aligned_cols=309 Identities=25% Similarity=0.316 Sum_probs=214.1
Q ss_pred CCceeecccccCC------CCCCcc---CChHHHHHHHHcCCceeEecCCCCC--CCCCCCHHHHHHHH---HHHhcC--
Q 015182 1 MPGLIDVHAHLDD------PGRTEW---EGFPSGTKAAAAGGITTLIDMPLNS--DPSTISTETLKLKV---DAAEKR-- 64 (411)
Q Consensus 1 lPGlID~H~H~~~------~~~~~~---~~~~~~~~~a~~~GvTtv~d~~~~~--~~~~~~~~~~~~~~---~~~~~~-- 64 (411)
+|||||+|+|..+ |+. .+ +.+.++.++++++||||++||+.+. .|.....+.++.+. +..+++
T Consensus 47 ~PGlID~H~h~~e~~~~prp~~-~~~~~~~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (376)
T TIGR02318 47 LPGLIDLHTDNLERHMSPRPGV-DWPIDAAIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGL 125 (376)
T ss_pred eccEEEcccCccccCcCCCCCC-CcchHHHHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCc
Confidence 6999999999977 554 34 7788999999999999999998433 34556677777776 555545
Q ss_pred CceEEEEEeeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh
Q 015182 65 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 144 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 144 (411)
+.+++.+|....-..++.++++..+.+.|+.++|.||+..+ ..++..+.+.+.+.+.. +.| .+|++....+.+.
T Consensus 126 ~~~d~~~h~~~e~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~ 199 (376)
T TIGR02318 126 LRADHRLHLRCELPNEEVLPELEELIDDPRVDLISLMDHTP-GQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEER 199 (376)
T ss_pred hhhhceeEEEEEecCccHHHHHHHHhcCCCcCEEEEeCCCC-CcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHH
Confidence 78999999887433445677888888899999999998764 23345677777666654 566 7899887654433
Q ss_pred hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcc
Q 015182 145 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 224 (411)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~ 224 (411)
..+.+ . . ....+..+++++++. |.++ ..|... ..+.++++++.|+.+. +.
T Consensus 200 ~~~~~------~-------~----~~e~i~~~v~~A~~~-------G~~v-~sH~~~---~~e~i~~a~~~Gv~~~-E~- 249 (376)
T TIGR02318 200 IARRA------E-------Y----GLANRSEIAALARAR-------GIPL-ASHDDD---TPEHVAEAHDLGVTIS-EF- 249 (376)
T ss_pred HHHHh------h-------c----cHHHHHHHHHHHHHC-------CCeE-EEecCC---CHHHHHHHHHCCCChh-cc-
Confidence 22111 0 0 124677888888876 7777 668742 2356777777787432 21
Q ss_pred cccccccccccCCCCcc-eEEcC-CCCChhh--HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhh
Q 015182 225 PHYLAFSAEEIPDGDTR-FKCAP-PIRDAAN--KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300 (411)
Q Consensus 225 p~~l~~~~~~~~~~~~~-~~~~p-~lr~~~~--~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~ 300 (411)
|..... .+.+.+.|.. ..+.| ++|...+ ...+|+++++|++++++|||.|...
T Consensus 250 ~~t~e~-a~~~~~~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~G~~~~l~SD~~p~~~---------------------- 306 (376)
T TIGR02318 250 PTTLEA-AKEARSLGMQILMGAPNIVRGGSHSGNLSARELAHEGLLDVLASDYVPASL---------------------- 306 (376)
T ss_pred CCCHHH-HHHHHHcCCeEEECCccccccccccchHHHHHHHHCCCcEEEEcCCCcHHH----------------------
Confidence 111100 0111223433 22334 4665544 6789999999999999999976421
Q ss_pred HHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 301 VLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 301 ~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
+...+.... ..+++++++++++|.|||+++|++++|+|++|++|||++||... . .
T Consensus 307 -l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~~G~I~~G~~ADlvvvd~~~--------~--------~------- 362 (376)
T TIGR02318 307 -LLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSDRGSIAPGKRADLVRVHRVD--------G--------V------- 362 (376)
T ss_pred -HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCCCCcCCCCCcccEEEEcCCC--------C--------C-------
Confidence 122222323 34799999999999999999999768999999999999999631 0 0
Q ss_pred EeEEEEEEECCEEEE
Q 015182 380 SGKVLATISRGNLVY 394 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~ 394 (411)
..|..||++|++||
T Consensus 363 -~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 363 -PRIRAVWRAGRRVY 376 (376)
T ss_pred -ccceEEEECCEEeC
Confidence 15789999999986
No 38
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.97 E-value=4e-28 Score=232.24 Aligned_cols=297 Identities=23% Similarity=0.289 Sum_probs=186.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh---cCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+..++... ..+....++++||||++|++ ... ..+.+.+.......+ .+.++.+.++.....
T Consensus 55 ~PGliD~H~H~~~~g~~~---~~~~~~~~l~~G~Ttv~d~g-~~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~ 128 (379)
T PRK12394 55 TPGLIDYHAHVFYDGTEG---GVRPDMYMPPNGVTTVVDAG-SAG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWS 128 (379)
T ss_pred ECCEEEeeecCCCCCccc---ccCHHHHHHhCCccEEEECC-CCC--cccHHHHHHHHhhhhcceeeeEEeeeccccccc
Confidence 699999999997654322 23345678999999999998 332 244555555432222 122333333322110
Q ss_pred ---CC-c-c--chHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhh
Q 015182 78 ---EN-A-Y--NASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 78 ---~~-~-~--~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 147 (411)
+. . . ..+++.++.+ .++.++|+++..... ..++++.+++.++.|+++|+++++|+.+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~------ 199 (379)
T PRK12394 129 GYQENYDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDI---AEYGLKPLTETLRIANDLRCPVAVHSTHPVLP------ 199 (379)
T ss_pred CcccccChhHCCHHHHHHHHHHCcCcEEEEEEEEecccc---cccchHHHHHHHHHHHHcCCCEEEEeCCCCcc------
Confidence 00 1 1 1245555543 467888987654321 14578999999999999999999999875321
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEc-------CCChHHHHHHHHHHhHCCCCEE
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH-------LSDASSSLDLLMEAKTNGDSIT 220 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h-------~~~~~~~~~~i~~~~~~g~~i~ 220 (411)
..+++.+.... ..-.|+.| .+.. ...+.++.++++|+.+.
T Consensus 200 -------------------------~~~~~~~l~~g-------~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~ 246 (379)
T PRK12394 200 -------------------------MKELVSLLRRG-------DIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFD 246 (379)
T ss_pred -------------------------HHHHHHhcCCC-------CEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEE
Confidence 11122222110 12223322 2222 23566677777785332
Q ss_pred EEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 221 VETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 221 ~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
+. ++ +...+.+.+++++++|. +++||||+.+.+... +++
T Consensus 247 ~~-~g-----------------------~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~-----~~~----------- 286 (379)
T PRK12394 247 AA-NG-----------------------RSHFDMNVARRAIANGFLPDIISSDLSTITKLA-----WPV----------- 286 (379)
T ss_pred ec-CC-----------------------ccccchHHHHHHHHCCCCceEEECCCCCCCccc-----Ccc-----------
Confidence 21 11 11123567788899995 899999998765211 111
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCC-CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 378 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~-~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~ 378 (411)
..+..+++.....+++++++++++|.|||+++|++ ++|+|++|+.|||+++|.+.++.. .. + +.|..
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~-~~-d----------~~g~~ 354 (379)
T PRK12394 287 YSLPWVLSKYLALGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVE-FA-D----------IHGET 354 (379)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcce-ec-c----------CCCCE
Confidence 13344455555678999999999999999999994 789999999999999998876542 22 2 23444
Q ss_pred EEe----EEEEEEECCEEEEEcC
Q 015182 379 LSG----KVLATISRGNLVYKEG 397 (411)
Q Consensus 379 ~~~----~v~~ti~~G~~v~~~g 397 (411)
+.+ .|..||++|++||++-
T Consensus 355 ~~~~~~~~v~~t~v~G~~v~~~~ 377 (379)
T PRK12394 355 LTGTHVLVPQMTIKSGEILYRQI 377 (379)
T ss_pred EEeeeecceEEEEECCEEEEecC
Confidence 555 7999999999999864
No 39
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.96 E-value=8.5e-28 Score=233.75 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=147.3
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
|+..+|+++++.. ...++++++.++++.|+++|+++.+|+.+... .+......| ..
T Consensus 175 ~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~-------------~~------- 231 (411)
T cd01298 175 ADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG-------------KR------- 231 (411)
T ss_pred CCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC-------------CC-------
Confidence 4677898876542 12468899999999999999999999866432 211111100 00
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+ +.+.+.+ ..+.++.+.|++.. +.+.++.+++.|+ .+.+||...+. .+ ...+|
T Consensus 232 ~~----~~~~~~~----~~~~~~~i~H~~~l--~~~~~~~l~~~gi--~~~~~p~~~~~-------~~---~~~~~---- 285 (411)
T cd01298 232 PV----EYLEELG----LLGPDVVLAHCVWL--TDEEIELLAETGT--GVAHNPASNMK-------LA---SGIAP---- 285 (411)
T ss_pred HH----HHHHHcC----CCCCCeEEEEecCC--CHHHHHHHHHcCC--eEEEChHHhhh-------hh---hCCCC----
Confidence 11 1111211 12567778888765 3355667777775 55678864211 01 01122
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPA 328 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A 328 (411)
+++++++|+.+++|||+.+.... .++| .+..+...+.... +.+++++++++++|.|||
T Consensus 286 -----~~~~~~~Gv~~~~GsD~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A 346 (411)
T cd01298 286 -----VPEMLEAGVNVGLGTDGAASNNN-----LDMF---------EEMRLAALLQKLAHGDPTALPAEEALEMATIGGA 346 (411)
T ss_pred -----HHHHHHCCCcEEEeCCCCccCCC-----cCHH---------HHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHH
Confidence 34567889999999997432110 0111 1112211111111 136999999999999999
Q ss_pred HHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 329 ~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|++++|+|++|+.|||+|+|.+.++.++.+ +++++.. +.+ ..++|..||++|++||++|+++
T Consensus 347 ~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~-----~~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 347 KALGLDEIGSLEVGKKADLILIDLDGPHLLPVH-DPISHLV-YSA-----NGGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred HHhCCccCCCcCCCccCCEEEEeCCCCccCCcc-chhhHhe-Eec-----CCCCeeEEEECCEEEEECCEeC
Confidence 999997689999999999999999977666655 4443221 122 1468999999999999998764
No 40
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.95 E-value=5.5e-27 Score=222.23 Aligned_cols=276 Identities=21% Similarity=0.103 Sum_probs=165.0
Q ss_pred CCceeecccccCCCCCCccC-----------ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCce-
Q 015182 1 MPGLIDVHAHLDDPGRTEWE-----------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYV- 67 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~-----------~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 67 (411)
+|||||+|+|+..+...... ......+.++++|||||+|++ +..+ .. ++...+.... ..++
T Consensus 12 ~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~----~~-~~~~~~~g~~~gPr~~ 85 (342)
T cd01299 12 MPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADY----GL-LRDAIDAGLIPGPRVF 85 (342)
T ss_pred CCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-Ccch----HH-HHHHHHcCCccCCcee
Confidence 79999999998654321111 112467889999999999998 3211 11 3332222111 0111
Q ss_pred -------------EEEEE--------eeecCCCc-cchHHHHHHHHCCceEEEEeccCCC-----CCCCCCCCHHHHHHH
Q 015182 68 -------------DVGFW--------GGLVPENA-YNASALEALLNAGVLGLKSFMCPSG-----INDFPMTNASHIKEG 120 (411)
Q Consensus 68 -------------~~~~~--------~~~~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~~~~l~~~ 120 (411)
++.+. ......+. +....++++++.|++.||+|+++.. ..+...++.++++++
T Consensus 86 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~ 165 (342)
T cd01299 86 ASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAI 165 (342)
T ss_pred ecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHH
Confidence 11100 00000111 2245677778889999999987531 112236789999999
Q ss_pred HHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC
Q 015182 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 200 (411)
Q Consensus 121 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~ 200 (411)
++.|+++|+++.+|+.+... +..+++. |.. .++|+.
T Consensus 166 ~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~l~~-----------G~~-~i~H~~ 201 (342)
T cd01299 166 VDEAHKAGLYVAAHAYGAEA--------------------------------IRRAIRA-----------GVD-TIEHGF 201 (342)
T ss_pred HHHHHHcCCEEEEEeCCHHH--------------------------------HHHHHHc-----------CCC-EEeecC
Confidence 99999999999999987532 2222221 222 478887
Q ss_pred ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCC-------ChhhHHHHHHHHhcCCccEEcCCC
Q 015182 201 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR-------DAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 201 ~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr-------~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
.. +.+.++.++++|+.+ ..||........... ....++.. .......+..+++.|+.+++|||.
T Consensus 202 ~~--~~~~~~~l~~~g~~~--~~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~ 272 (342)
T cd01299 202 LI--DDETIELMKEKGIFL--VPTLATYEALAAEGA-----APGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDA 272 (342)
T ss_pred CC--CHHHHHHHHHCCcEE--eCcHHHHHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 65 346677777888644 355543211000000 00001000 001224555667789999999996
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP 352 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~ 352 (411)
..... .+ . .+...+....+.+++++++++++|.|||+++|+ +++|+|++||.|||+|+|.
T Consensus 273 ~~~~~--------------~~---~--~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~ 333 (342)
T cd01299 273 GFPVP--------------PH---G--WNARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDG 333 (342)
T ss_pred CCCCC--------------ch---h--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECC
Confidence 32000 01 0 011112234567899999999999999999999 6789999999999999997
Q ss_pred CC
Q 015182 353 EA 354 (411)
Q Consensus 353 ~~ 354 (411)
|+
T Consensus 334 ~p 335 (342)
T cd01299 334 DP 335 (342)
T ss_pred Ch
Confidence 74
No 41
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.95 E-value=3e-26 Score=221.08 Aligned_cols=297 Identities=24% Similarity=0.284 Sum_probs=182.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHH--HHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++++++||||+++++. ++.+...+.. .+..+.+..+ ...+++.+++.
T Consensus 134 ~PG~ID~HVH~~~Pg~---------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~ 203 (573)
T PRK13206 134 TAGAIDCHVHFICPQI---------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGK 203 (573)
T ss_pred EeCEEeeeeccCCchH---------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecC
Confidence 6999999999987752 38899999999999742 1222212222 3334444333 46789988863
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. +....+++.++++.|+.+||++.+| ..+++.+.+++++|+++|+++.+|++.-... ++
T Consensus 204 g---~~~~~~~L~el~~aGA~GfKi~~d~-------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~--g~--------- 262 (573)
T PRK13206 204 G---NTVSAEALWEQLRGGAGGFKLHEDW-------GSTPAAIDACLRVADAAGVQVALHSDTLNEA--GF--------- 262 (573)
T ss_pred c---CcCCHHHHHHHHHCCCcEEeecCcc-------CCCHHHHHHHHHHHHHhCCEEEEECCCcccc--ch---------
Confidence 2 2223457888889999999997543 3688999999999999999999999975421 10
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
++..+..+ .|..+|++|...+- ..-++|+.+...++ +-++++|..-|.-
T Consensus 263 ------------------~E~t~aa~---------~gr~iH~~H~egaggghapd~~~~~~~~n~-lp~stnpt~p~~~- 313 (573)
T PRK13206 263 ------------------VEDTLAAI---------AGRSIHAYHTEGAGGGHAPDIITVASHPNV-LPSSTNPTRPHTV- 313 (573)
T ss_pred ------------------hhHHHHHh---------cCCeEEEEeccCCCcCcccHHHHhcCCCCC-cCCCCCCCCCCcc-
Confidence 11212222 28899999987530 24577777755443 3344555432211
Q ss_pred cccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
.-+.+ +.-.. ...|. +|.. ...+.| ++.|++.+++||......... ...++|.
T Consensus 314 nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l---~d~G~~~~~~SDs~~~~~~~e-~~~~~~q------ 383 (573)
T PRK13206 314 NTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVL---HDMGAISMIGSDSQAMGRIGE-VVLRTWQ------ 383 (573)
T ss_pred cchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchH---hhCCcEEeccCCccccccccc-hhhhHHH------
Confidence 00000 00000 00111 1111 011222 455999999999643111000 0001110
Q ss_pred chhhhHHHHHHH-H------HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccC
Q 015182 296 SSLQFVLPVTWS-Y------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 367 (411)
Q Consensus 296 ~~~~~~~~~~~~-~------~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~ 367 (411)
....+.. . ..++.++++++|+++|.|||+++|+ +++|+|++||.||||+||++. +
T Consensus 384 -----~a~~~~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~-f----------- 446 (573)
T PRK13206 384 -----TAHVMKRRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAF-F----------- 446 (573)
T ss_pred -----HHHHHHhccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccc-c-----------
Confidence 0000000 0 0134589999999999999999999 679999999999999999651 1
Q ss_pred CCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 368 HPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 368 ~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..|+++|+++|..
T Consensus 447 ------------~~~~~~ti~~G~iv~~~ 463 (573)
T PRK13206 447 ------------GVRPHAVLKGGAIAWAA 463 (573)
T ss_pred ------------CCCccEEEECCEEEEec
Confidence 12467899999999986
No 42
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.95 E-value=6e-26 Score=217.91 Aligned_cols=299 Identities=24% Similarity=0.302 Sum_probs=182.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC------CCCCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|++ .++++++||||+++++. ++.+.......+..+.+.++ ...+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~-~~pin~g~~gk 197 (567)
T cd00375 128 TAGGIDTHVHFICPQQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD-GLPVNIGFLGK 197 (567)
T ss_pred eeceEECccCCCCccH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh-cCCceEEEEec
Confidence 6999999999987743 47899999999999731 22233344567777766655 34688888753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+.+.++.++.+.|+.+||++.+| ..++..+.+++++|+++|.++.+|++.-... +
T Consensus 198 g---~~~~l~eL~e~~~aGA~GfK~~eD~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~--g---------- 255 (567)
T cd00375 198 G---NGSSPDALAEQIEAGACGLKLHEDW-------GATPAAIDTCLSVADEYDVQVAIHTDTLNES--G---------- 255 (567)
T ss_pred C---ccccHHHHHHHHHcCCEEEEecCCC-------CCCHHHHHHHHHHHHhhCCEEEEECCCCCcc--h----------
Confidence 2 2245677888888999999987644 2478999999999999999999999974321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..+... .|..+|++|....- ..-++++.+...++ +-.+++|..-|.-
T Consensus 256 -----------------~~E~t~aa~---------~gr~iH~~H~egaggghapdi~~~~~~~nv-lp~stnpt~p~t~- 307 (567)
T cd00375 256 -----------------FVEDTIAAI---------KGRTIHTYHTEGAGGGHAPDIIKVAGHPNV-LPSSTNPTRPFTV- 307 (567)
T ss_pred -----------------HHHHHHHHh---------cCCeEEEEecCCCCcccchHHHHhcCCCCc-ccCCCCCCCCCcc-
Confidence 122222222 28889999987530 24466666654443 3344555432211
Q ss_pred cccCC-CCcceE---EcCC-----------CCChhhHHHHHHHH-hcCCccEEcCCCCCCChhhhhcccCCccccCCCCc
Q 015182 233 EEIPD-GDTRFK---CAPP-----------IRDAANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296 (411)
Q Consensus 233 ~~~~~-~~~~~~---~~p~-----------lr~~~~~~~l~~~l-~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~ 296 (411)
.-+.+ +.-... ..|. +|... .+.-+.| +.|++.+++||....... ...+.
T Consensus 308 nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~~t--i~ae~~l~d~G~~s~~~sDs~~mgr~------------ge~~~ 373 (567)
T cd00375 308 NTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRAET--IAAEDVLHDLGAISIMSSDSQAMGRV------------GEVIL 373 (567)
T ss_pred CchhhhcCeEEeecCCCCCCcchhhhhhhhccchh--hccchhhhccCcEEEEccchhhcCcc------------ceeee
Confidence 00000 000000 0111 11110 0111112 349999999996422100 00001
Q ss_pred hhhhHHHHHHHHHHhcC--------CCH---HHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCc
Q 015182 297 SLQFVLPVTWSYGRKYG--------VTL---EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 364 (411)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--------l~~---~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~ 364 (411)
.+ .........+.| .+- .+.|+++|.|||+++|+ +++|+|++||.||||||+++.
T Consensus 374 r~---~q~a~k~~~~~g~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~---------- 440 (567)
T cd00375 374 RT---WQTAHKMKAQRGPLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAF---------- 440 (567)
T ss_pred ch---HHHHHHHHHhcCCCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcc----------
Confidence 00 011111112223 233 44599999999999999 779999999999999999651
Q ss_pred ccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 365 HMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 365 ~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
| ..++..||++|++||.. |...
T Consensus 441 ---------f-----~~~p~~vi~~G~iv~~~~gd~n 463 (567)
T cd00375 441 ---------F-----GVKPEMVLKGGFIAYAQMGDPN 463 (567)
T ss_pred ---------c-----CCCeeEEEECCEEEEecCCCcc
Confidence 1 12468999999999997 6544
No 43
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.95 E-value=2.2e-26 Score=220.10 Aligned_cols=290 Identities=25% Similarity=0.337 Sum_probs=179.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHH--HHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .+.|+++||||+++++. ++.|...+.. .+..+.+.++. ..+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gk 197 (568)
T PRK13985 128 TAGGIDTHIHFISPQQ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGK 197 (568)
T ss_pred EeCEEEeeCCCCCccH---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecC
Confidence 5999999999987753 24699999999999531 3444333222 24555554443 3588887753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ....++++.++++.|+.+||++.++ ..++..+.+++++|++++.+|.+|++......
T Consensus 198 G---~~~~l~eL~el~~aGA~GfK~~ed~-------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g------------ 255 (568)
T PRK13985 198 G---NSSNDASLADQIEAGAIGFKIHEDW-------GTTPSAINHALDVADKYDVQVAIHTDTLNEAG------------ 255 (568)
T ss_pred C---ccCCHHHHHHHHHcCCEEEEECCcc-------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCch------------
Confidence 2 2234667888888999999986433 35789999999999999999999999754210
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..++.. .|..+|++|.... -..-++|+.+...++ +-++++|..-|.-
T Consensus 256 -----------------~~E~t~aa~---------~gr~iH~~H~egaggghapdi~~~~~~~nv-lp~stnpt~p~t~- 307 (568)
T PRK13985 256 -----------------CVEDTMAAI---------AGRTMHTFHTEGAGGGHAPDIIKVAGEHNI-LPASTNPTIPFTV- 307 (568)
T ss_pred -----------------hhHHHHHHh---------cCCeEEEEeccCCCccchhhHHHHcCCCCc-ccCCCCCCCCCcc-
Confidence 012222222 2888999998753 034577777654443 3344555322211
Q ss_pred cccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
.-+.+ +.-.. ...|. +|.. ...+.| .+.|.+..++||...... ....+
T Consensus 308 nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l---~d~G~~s~~~SDs~~mgr------------~ge~~ 372 (568)
T PRK13985 308 NTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTL---HDMGIFSITSSDSQAMGR------------VGEVI 372 (568)
T ss_pred CchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchh---hhCCcEEEEeccchhhCc------------cccee
Confidence 00000 00000 00111 1111 011122 234999999999642210 00001
Q ss_pred chhhhHHHHHHHH---HHh------------cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeC
Q 015182 296 SSLQFVLPVTWSY---GRK------------YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 296 ~~~~~~~~~~~~~---~~~------------~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
. .+|+. +.. -.++++++|+++|.|||+++|+ +++|+|++||.|||||||++..
T Consensus 373 ~-------r~~q~a~k~~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f---- 441 (568)
T PRK13985 373 T-------RTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF---- 441 (568)
T ss_pred e-------ehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC----
Confidence 1 11111 111 1367889999999999999999 6799999999999999996621
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..||++|+++|..
T Consensus 442 --------------------~~~pe~vi~~G~iv~~~ 458 (568)
T PRK13985 442 --------------------GVKPNMIIKGGFIALSQ 458 (568)
T ss_pred --------------------CCChheEEECCEEEEcc
Confidence 12467999999999985
No 44
>PRK06687 chlorohydrolase; Validated
Probab=99.95 E-value=3.4e-26 Score=222.24 Aligned_cols=320 Identities=16% Similarity=0.133 Sum_probs=179.9
Q ss_pred CCceeecccccCCCCC---C--------------------ccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHHH
Q 015182 1 MPGLIDVHAHLDDPGR---T--------------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTET 53 (411)
Q Consensus 1 lPGlID~H~H~~~~~~---~--------------------~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~~ 53 (411)
+|||||+|+|+.+... . ..+..+. +...++++||||++|+. ...+ ....+.
T Consensus 57 ~PGlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~~~~~~ 134 (419)
T PRK06687 57 MPGLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-VDIQQI 134 (419)
T ss_pred ccceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh-cccc-ccHHHH
Confidence 7999999999965421 0 0111222 33445899999999986 3222 122223
Q ss_pred HHHHHHHHhcCCceEEEEEe-eecCCC-ccchHHHHHHHH----CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC
Q 015182 54 LKLKVDAAEKRIYVDVGFWG-GLVPEN-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 127 (411)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 127 (411)
++... +...++.+.... +..... .+.+++..++++ .+...+++++.+.. ...++++.++++++.|+++
T Consensus 135 ~~a~~---~~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~ 208 (419)
T PRK06687 135 YQVVK---TSKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKEL 208 (419)
T ss_pred HHHHH---HhCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHc
Confidence 33222 222334333211 111111 112333333332 23344777777643 2367899999999999999
Q ss_pred CCcEEEecCCcccc-hhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHH
Q 015182 128 KRPLLVHAEMEKGS-ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 206 (411)
Q Consensus 128 g~~v~~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~ 206 (411)
|+++.+|+.+.... ...+...| .+| ++...+.++ .+.+..+.|+... +.
T Consensus 209 g~~i~~H~~e~~~e~~~~~~~~g-------------~~~-----------~~~l~~~g~----l~~~~~~~H~~~~--~~ 258 (419)
T PRK06687 209 NIPLHVHVAETKEESGIILKRYG-------------KRP-----------LAFLEELGY----LDHPSVFAHGVEL--NE 258 (419)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHC-------------cCH-----------HHHHHHcCC----CCCCeEEEEEecC--CH
Confidence 99999999876421 11111110 111 111222221 2556777787754 23
Q ss_pred HHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccC
Q 015182 207 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 286 (411)
Q Consensus 207 ~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~ 286 (411)
+.++.+++.|+.+ .+||..-... + .-.+| +.++++.|+.+++|||..+.+...
T Consensus 259 ~~~~~la~~g~~v--~~~P~sn~~l-------~---~g~~p---------~~~~~~~Gv~v~lGtD~~~~~~~~------ 311 (419)
T PRK06687 259 REIERLASSQVAI--AHNPISNLKL-------A---SGIAP---------IIQLQKAGVAVGIATDSVASNNNL------ 311 (419)
T ss_pred HHHHHHHHcCCeE--EECcHHhhhh-------c---cCCCc---------HHHHHHCCCeEEEeCCCCCCCCCh------
Confidence 4456666777644 4577531110 1 11233 234577799999999964321100
Q ss_pred CccccCCCCchh-hhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCC-eeEeCC
Q 015182 287 NFLKAWGGISSL-QFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA-EFELDN 360 (411)
Q Consensus 287 ~~~~~~~g~~~~-~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~-~~~~~~ 360 (411)
..+ +.+....++... ...++++++++++|.|||+++|+ +++|+|++|+.|||+++|.+. +...|.
T Consensus 312 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~ 382 (419)
T PRK06687 312 ---------DMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQ 382 (419)
T ss_pred ---------hHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCc
Confidence 111 112221222111 12489999999999999999999 568999999999999999763 322222
Q ss_pred CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
. +... ...|.+. ..+|..|||+||+|+++|+++.
T Consensus 383 ~-~~~~----~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~ 416 (419)
T PRK06687 383 E-NMLS----HLVYAVK--SSDVDDVYIAGEQVVKQGQVLT 416 (419)
T ss_pred c-CHHH----HhheeCC--CCCccEEEECCEEEEECCeEec
Confidence 2 1111 1122221 3479999999999999999864
No 45
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=99.95 E-value=1.4e-25 Score=217.52 Aligned_cols=304 Identities=22% Similarity=0.255 Sum_probs=185.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC------CCCCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++|+++||||+++++. ++.+.......++.+.+..+ ...+++.++..
T Consensus 132 tPG~ID~HvH~~~P~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~-~~pvn~g~~gk 201 (572)
T PRK13309 132 TAAGIDTHIHLISPQQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIE-GLPVNVGILGK 201 (572)
T ss_pred EeCEEEeecccCCcch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhc-cCCcCEEEEcC
Confidence 5999999999988753 36899999999997531 22222233456776666555 34688887752
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ......++.++++.|+.+||++.++ ..+++.+.+++++|+++|.++.+|+..-... +
T Consensus 202 g---~~~~~~~l~el~~aGa~gfk~~~d~-------g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~--g---------- 259 (572)
T PRK13309 202 G---NSYGRGPLLEQAIAGVAGYKVHEDW-------GATAAALRHALRVADEVDIQVAVHTDSLNEC--G---------- 259 (572)
T ss_pred C---CCCCHHHHHHHHhcCcEEEEecCcC-------CcCHHHHHHHHHHHHhcCCEEEEeCCccccc--h----------
Confidence 2 2233466778888999999987543 2478999999999999999999999874321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
.++.++ +.. .+.++|.+|.... -..-++++.+...++ +-++++|..-|.-.
T Consensus 260 -----------------~vE~~~--aa~-------~grpih~~H~~Gaggghapd~~~~~~~~~~-~~~st~pt~p~~~~ 312 (572)
T PRK13309 260 -----------------YVEDTI--DAF-------EGRTIHTFHTEGAGGGHAPDIIKVASQTNV-LPSSTNPTLPYGVN 312 (572)
T ss_pred -----------------hHHHHH--HHh-------CCCceeeeeccCcccCCchhHHHhcCCCCc-ccCCCCCCCCCccc
Confidence 122222 221 2788999997642 024466666644443 33445554222100
Q ss_pred cccCC-CC---cceEEcCC-----------CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 233 EEIPD-GD---TRFKCAPP-----------IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 233 ~~~~~-~~---~~~~~~p~-----------lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
-+.+ +. ......|. +|. +...+...+++.|++.+++||+ |...... .+++. +
T Consensus 313 -~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~-e~~~a~~~l~daGa~~~~gSD~-pv~gr~~---~~p~~-------~ 379 (572)
T PRK13309 313 -SQAELFDMIMVCHNLNPNVPADVAFAESRVRP-ETIAAENVLHDMGVISMFSSDS-QAMGRVG---ENWLR-------A 379 (572)
T ss_pred -chHhhhchhhhhccCCCCCCCChhHHHHhhCc-hhhcchhHHHhCCCEEEEcCCC-CcccCCc---ccHHH-------H
Confidence 0000 00 00000111 111 1123334456779999999996 3310000 01110 0
Q ss_pred hhhHHHHHHH------H-HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCC
Q 015182 298 LQFVLPVTWS------Y-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 369 (411)
Q Consensus 298 ~~~~~~~~~~------~-~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 369 (411)
+......... . .....+++.++|+++|.|||+++|+ +++|+|++||.|||||||++. +
T Consensus 380 iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~-f------------- 445 (572)
T PRK13309 380 IQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRF-F------------- 445 (572)
T ss_pred HHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhh-c-------------
Confidence 1111100000 0 0123478999999999999999999 789999999999999999651 1
Q ss_pred CCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 370 SISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 370 ~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
..++.+||++|++||.. |+..
T Consensus 446 ----------~~~~~~vi~~G~iv~~~~gd~~ 467 (572)
T PRK13309 446 ----------GAKPKMVIKGGMINWAAMGDPN 467 (572)
T ss_pred ----------CCCccEEEECCEEEEecCCCcc
Confidence 12468999999999988 6654
No 46
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.95 E-value=1e-26 Score=227.74 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh-hccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK-LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.+++++++++++.|+++|+++.+|+.+.......+. ..| .+ .++...+.+ .
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~-----------~~~~l~~~g----~ 246 (445)
T PRK07228 195 SCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETG-------------MR-----------NIHYLDEVG----L 246 (445)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------CC-----------HHHHHHHCC----C
Confidence 467899999999999999999999976543221111 101 00 011122221 1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|++.. . .+.++.+++.|+.+ .+||..-.. . + .....++++++.|+++++
T Consensus 247 ~~~~~~l~H~~~~-~-~~~~~~~~~~g~~v--~~~P~~~~~------~-~------------~~~~p~~~~~~~Gv~v~l 303 (445)
T PRK07228 247 TGEDLILAHCVWL-D-EEEREILAETGTHV--THCPSSNLK------L-A------------SGIAPVPDLLERGINVAL 303 (445)
T ss_pred CCCCcEEEEEecC-C-HHHHHHHHHcCCeE--EEChHHhhh------c-c------------cccCcHHHHHHCCCeEEE
Confidence 2668888998854 2 23345556667644 467753110 0 0 012245667888999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
|||+.+..... ++| .+..+...++... ...++++++++++|.|||+++|+ +.+|+|++|+.|
T Consensus 304 GtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~A 369 (445)
T PRK07228 304 GADGAPCNNTL-----DPF---------TEMRQAALIQKVDRLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKA 369 (445)
T ss_pred cCCCCccCCCc-----cHH---------HHHHHHHHHhhhccCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCcc
Confidence 99986543211 112 1112222222111 13589999999999999999999 678999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCc---eEEeEEEEEEECCEEEEEcCcccC
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~---~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||+|+|.+.+...+.+ . .+|+... ....+|..||++|++||++|+++.
T Consensus 370 Dlvvld~~~~~~~p~~-~-------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 420 (445)
T PRK07228 370 DLAILDLDGLHATPSH-G-------VDVLSHLVYAAHGSDVETTMVDGKIVMEDGELTT 420 (445)
T ss_pred CEEEEcCCCcccCCCc-c-------cCHHHHhheeCCCCCeeEEEECCEEEEECCeEcc
Confidence 9999998865433322 0 1222111 013579999999999999999874
No 47
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.95 E-value=1.5e-25 Score=215.16 Aligned_cols=290 Identities=25% Similarity=0.311 Sum_probs=181.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCC-CCC-CCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN-SDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..|+. .++|+++||||+++++.. +.+ .......++.+.+..+. ..++++++....
T Consensus 132 tPG~ID~HVH~~~Pg~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~-- 199 (569)
T PRK13308 132 TPGAIDVHVHFDSAQL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGN-- 199 (569)
T ss_pred EeCEEEeeeCCCCccH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCc--
Confidence 5999999999987643 378999999999996411 112 23456667776665553 568988875322
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
...++++.++++.|+.+||++.++ ..+++.+.+++++|+++|++|.+|+...... +
T Consensus 200 -~s~~aeL~eli~aGA~GfKi~ed~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~--g-------------- 255 (569)
T PRK13308 200 -SSKPAALIEQVEAGACGLKIHEDW-------GAMPAAIDTCLEVADEYDFQVQLHTDTLNES--G-------------- 255 (569)
T ss_pred -ccCHHHHHHHHHCCCCEEeecCCC-------CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcc--h--------------
Confidence 134567888888999999988643 2477999999999999999999999874321 0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
-++..++... |..+|++|....- ..-++|+.....++ +-.+++|..-|.- .-+.
T Consensus 256 -------------~~E~t~~a~~---------gr~iH~~H~egaggghapd~l~~~~~~n~-lp~stnpt~p~t~-nt~~ 311 (569)
T PRK13308 256 -------------FVEDTLAAIG---------GRTIHMYHTEGAGGGHAPDIIRVVGEPHC-LPSSTNPTNPYTV-NTFD 311 (569)
T ss_pred -------------HHHHHHHHhc---------CCeEEEEeccCCccCchhHHHHHhCCCCc-cCCCCCCCCCCcc-Cchh
Confidence 1222222222 8889999987530 24456666544443 3344555432211 0000
Q ss_pred C-CCcceE---EcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 237 D-GDTRFK---CAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 237 ~-~~~~~~---~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
+ +.-... ..|. +|.. ...+.| .+.|++..++||.... ..+.
T Consensus 312 e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ae~~l---~d~g~~s~~~sds~~m-------------------gr~~ 369 (569)
T PRK13308 312 EHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIAAEDVL---HDIGAISMLGSDSQGM-------------------GRIA 369 (569)
T ss_pred hhcCeEEEecCCCCCCcchhhhhhhhccceeeccCchh---hcCCcEEEEecchHHH-------------------hHHH
Confidence 0 000000 0111 1111 001122 1338889999996321 1111
Q ss_pred hHHHHHHHHH---Hh-cC-CCHHH-----------HHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCC
Q 015182 300 FVLPVTWSYG---RK-YG-VTLEQ-----------LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDH 362 (411)
Q Consensus 300 ~~~~~~~~~~---~~-~~-l~~~~-----------al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 362 (411)
..+...|+.. .. .| ++.++ .|+++|.|||+++|+ +++|+|++||.||||+||++. +
T Consensus 370 e~i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~-f------ 442 (569)
T PRK13308 370 EVIARTWQLASKMKDQRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAF-F------ 442 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcc-c------
Confidence 1223334322 21 23 66554 799999999999999 679999999999999999651 1
Q ss_pred CcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 363 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 363 ~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..||++|+++|..
T Consensus 443 -----------------gv~p~~ti~~G~iv~~~ 459 (569)
T PRK13308 443 -----------------GIKPELVIKGGFPAWAA 459 (569)
T ss_pred -----------------CCCeeEEEECCEEEEec
Confidence 11467899999999964
No 48
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.94 E-value=1.5e-25 Score=219.56 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=142.2
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
.+++.+.+.+ ...+++++++++++.|+++|+++.+|+.+... ....+...| .+
T Consensus 198 ~i~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~---------- 251 (451)
T PRK08203 198 MLRIALAPCS---PFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFG-------------MR---------- 251 (451)
T ss_pred eEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------CC----------
Confidence 4666555432 23578999999999999999999999865322 111111000 00
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhH
Q 015182 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~ 254 (411)
.++...+.++ .+.++.+.|+... +.+.++.+++.|+.+ .+||..... .+ ...+|
T Consensus 252 -~~~~l~~~g~----l~~~~~~~H~~~l--~~~~~~~la~~g~~v--~~~P~~~~~-------l~---~~~~~------- 305 (451)
T PRK08203 252 -PVDYLEDLGW----LGPDVWLAHCVHL--DDAEIARLARTGTGV--AHCPCSNMR-------LA---SGIAP------- 305 (451)
T ss_pred -HHHHHHHcCC----CCCCeEEEEEeCC--CHHHHHHHHhcCCeE--EECcHHhhh-------hc---cCCCC-------
Confidence 0122223221 2567778888765 234566666777644 467753110 01 11122
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH--hcCCCHHHHHHHHhHhHHHHhC
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... ++| .+..+...+.... ...+++.++++++|.|||+++|
T Consensus 306 --~~~~~~~Gv~v~lGtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg 369 (451)
T PRK08203 306 --VRELRAAGVPVGLGVDGSASNDGS-----NLI---------GEARQALLLQRLRYGPDAMTAREALEWATLGGARVLG 369 (451)
T ss_pred --HHHHHHCCCeEEEecCCCccCCCc-----CHH---------HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhC
Confidence 345577899999999964321100 111 1122222222221 2359999999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE--EeEEEEEEECCEEEEEcCcccC
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~--~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++.+|+|++||.|||+|+|.+.+... .. ++||.++.+ ..+|..||++|++||++|+++.
T Consensus 370 ~~~~G~l~~G~~ADlvv~d~~~~~~~---------~~-~~p~~~l~~~~~~~v~~v~v~G~~v~~~~~~~~ 430 (451)
T PRK08203 370 RDDIGSLAPGKLADLALFDLDELRFA---------GA-HDPVAALVLCGPPRADRVMVGGRWVVRDGQLTT 430 (451)
T ss_pred CCCCCCcCCCCccCEEEEcCCccccC---------Cc-cChHHHHHccCCCCccEEEECCEEEEECCcccC
Confidence 97679999999999999998854221 11 567765543 3579999999999999999874
No 49
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=222.30 Aligned_cols=297 Identities=20% Similarity=0.164 Sum_probs=186.4
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEEeeecCCCccchHHHHHHH---HCCceEEEEe
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGGLVPENAYNASALEALL---NAGVLGLKSF 100 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ik~~ 100 (411)
+.+..++.|||++.||.. + ......+..++... .+...+++...........+..+.+.... .....++|+|
T Consensus 215 a~~~l~s~GiT~v~d~~~---~-~~~~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~K~f 290 (535)
T COG1574 215 AARELNSLGITGVHDMAG---Y-QGYYADYEAYRALAAGGELPVRVALLLFTEDLKEERLDLLRQTGAKGLLQGGGVKLF 290 (535)
T ss_pred HHHHHHhcCCeEEEcccc---c-ccchhHHHHHHHHHhcCcceEEEEeeccccchhhHHHhhcccCCccceeecCceEEE
Confidence 444677999999999982 1 12233334333332 34556666554321111110000000000 1224467787
Q ss_pred ccCC-------------C---CCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCC
Q 015182 101 MCPS-------------G---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR 164 (411)
Q Consensus 101 ~~~~-------------~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
++.+ + ..|.+.+++++|.++++.|.++|+++.+|+.++.+++..+
T Consensus 291 ~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~L------------------- 351 (535)
T COG1574 291 ADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAAL------------------- 351 (535)
T ss_pred EeCCCCcchhhccCcccCCCCCCCCcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHH-------------------
Confidence 7631 1 1267789999999999999999999999999998755332
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC-CCC-cce
Q 015182 165 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP-DGD-TRF 242 (411)
Q Consensus 165 p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~-~~~-~~~ 242 (411)
.+++.+... .+..+.+++++|++.. +.+.++++++.| +++++||++++.+...+. ..| .+.
T Consensus 352 ----------dafE~~~~~---~~~~~~r~rieH~~~v--~~~~i~R~~~Lg--v~~svQP~f~~~~~~~~~~rlG~~r~ 414 (535)
T COG1574 352 ----------DAFEKARKK---NGLKGLRHRIEHAELV--SPDQIERFAKLG--VIASVQPNFLFSDGEWYVDRLGEERA 414 (535)
T ss_pred ----------HHHHHHhhh---cCCccCCceeeeeeec--CHhHHHHHHhcC--ceEeeccccccccchHHHHhhhhhhh
Confidence 223333221 1123788999999875 446677776655 688999998876532222 222 233
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHH
Q 015182 243 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 322 (411)
Q Consensus 243 ~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~ 322 (411)
...+|+ ..+++.|++++.|||. |... .+||..+...+.+.... ......+..+|++++|++
T Consensus 415 ~~~~p~---------~~ll~~G~~la~gSD~-Pv~~------~dP~~~i~~AVtr~~~~---g~~~~~~~~L~~~eAL~~ 475 (535)
T COG1574 415 SRSYPF---------RSLLKAGVPLAGGSDA-PVEP------YDPWLGIYAAVTRKTPG---GRVLGPEERLTREEALRA 475 (535)
T ss_pred hccCcH---------HHHHHCCCeEeccCCC-CCCC------CChHHHHHHHHcCCCCC---CCCCccccccCHHHHHHH
Confidence 334443 3457889999999995 6643 24553211111000000 000011226999999999
Q ss_pred HhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 323 WSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 323 ~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+|.|+|++.+. +++|+|++||.|||+|+|.| +|.++++ .+. ..+|..|+++||+||+.
T Consensus 476 yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d-~f~~~~~-~i~--------------~~~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 476 YTEGGAYASGAEGEKGSLEPGKLADFAVLDRD-PFTVDPD-SIK--------------DTKVVLTIVAGKVVYRA 534 (535)
T ss_pred HhhhhHHhhhccccccccccCceeeEEEecCC-cccCChH-Hhc--------------cceEEEEEEcCeEeecC
Confidence 99999999999 78999999999999999987 7777776 442 45899999999999975
No 50
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.94 E-value=1.2e-24 Score=210.55 Aligned_cols=298 Identities=24% Similarity=0.332 Sum_probs=178.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC--CC--CCCCCC--HHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL--NS--DPSTIS--TETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~--~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++++++||||+++|+. ++ .+...+ ...+..+.+..+ ...+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~ 197 (568)
T PRK13207 128 TAGGIDTHIHFICPQQ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGK 197 (568)
T ss_pred EeCeEECccCCccccH---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcC
Confidence 6999999999987642 47899999999999842 11 122111 123554444333 35678877652
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+.++++.++++.|+.+||++.++ ..+++++.+++++|+++|++|.+|+...... +
T Consensus 198 g---~~~~~~~L~e~i~aGA~gfKi~~d~-------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~--G---------- 255 (568)
T PRK13207 198 G---NASLPEALEEQIEAGAIGLKLHEDW-------GATPAAIDNCLSVADEYDVQVAIHTDTLNES--G---------- 255 (568)
T ss_pred C---CcccHHHHHHHHHcCCCEEeecCCC-------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccc--h----------
Confidence 2 2234677888889999999998653 2478999999999999999999999864321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..++.. .|..+|++|.... -..-++++.+.+.|+ +-++++|..-|.-.
T Consensus 256 -----------------~~e~t~~a~---------~g~~iH~~H~egaggghapdii~~~~~~~v-~p~st~pt~p~~~~ 308 (568)
T PRK13207 256 -----------------FVEDTIAAF---------KGRTIHTFHTEGAGGGHAPDIIKVAGEPNV-LPSSTNPTRPYTVN 308 (568)
T ss_pred -----------------HHHHHHHhc---------CCCEEEEEeecCCCcCCchHHHHHhhcCCC-ccCCCCCCCCCccC
Confidence 012222222 2788999997631 034567777777665 33455664322110
Q ss_pred cccCC-CCcceE---EcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRFK---CAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~~---~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
-+.+ +.-... ..|. +|.. ...+.| ++.|.+.+++||+ |.... ++.+++.
T Consensus 309 -~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l---~d~Ga~~~~~SD~-p~~~~---~~~~~~r------ 374 (568)
T PRK13207 309 -TIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDIL---HDLGAISMISSDS-QAMGR---VGEVIIR------ 374 (568)
T ss_pred -chhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchh---hhCCCEEEecCCc-ccccc---cccchhH------
Confidence 0000 000000 0111 1111 011122 4559999999996 33210 0001110
Q ss_pred chhhhHHHHHHHHHHhcC-C----------CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCC
Q 015182 296 SSLQFVLPVTWSYGRKYG-V----------TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHP 363 (411)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-l----------~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~ 363 (411)
.+....+.....| + .+...|+++|.|||+++|+ +.+|+|++||.|||||||++. +
T Consensus 375 -----~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~-f------- 441 (568)
T PRK13207 375 -----TWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAF-F------- 441 (568)
T ss_pred -----HHHHHHHHHHccCCCCcccccCccchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchh-c-------
Confidence 0111111100111 1 1112299999999999999 679999999999999999651 1
Q ss_pred cccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 364 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 364 ~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
..++..|+++|+++|.. |+..
T Consensus 442 ----------------~~~~~~ti~~G~iv~~~~gd~~ 463 (568)
T PRK13207 442 ----------------GVKPELVLKGGMIAWAPMGDPN 463 (568)
T ss_pred ----------------CCCceEEEECCEEEEecCCCcc
Confidence 12467999999999987 6654
No 51
>PRK08204 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-24 Score=211.34 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++++.++++++.|+++|+++.+|+.+..... +. ..++. +.+.+ ..
T Consensus 197 ~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~----------~~----------------~~~~~----l~~~g----~~ 242 (449)
T PRK08204 197 FSSWEVARADFRLARELGLPISMHQGFGPWGA----------TP----------------RGVEQ----LHDAG----LL 242 (449)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEEcCCCccc----------CC----------------CHHHH----HHHCC----CC
Confidence 46789999999999999999999997643200 00 01221 22221 12
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+.++.+.|+... +.+.++.+++.|+.++ +||.+... .+. -.+| +.+++++|+.+++|
T Consensus 243 ~~~~~i~H~~~~--~~~~~~~la~~g~~v~--~~P~~~~~-------~g~---~~~~---------~~~~~~~Gv~v~lG 299 (449)
T PRK08204 243 GPDLNLVHGNDL--SDDELKLLADSGGSFS--VTPEIEMM-------MGH---GYPV---------TGRLLAHGVRPSLG 299 (449)
T ss_pred CCCeEEEecCCC--CHHHHHHHHHcCCCEE--EChHHHhh-------hcC---CCCc---------HHHHHhcCCceeec
Confidence 667889998875 3345667777787554 67753211 011 1122 23456779999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH--------------HHhcCCCHHHHHHHHhHhHHHHhCC-CC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--------------GRKYGVTLEQLASWWSERPAKLAGQ-VS 335 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~l~~~~al~~~T~n~A~~lg~-~~ 335 (411)
||+.+... .++|. +..+....+. ..+.++++.++|+++|.|+|+++|+ ++
T Consensus 300 tD~~~~~~------~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~ 364 (449)
T PRK08204 300 VDVVTSTG------GDMFT---------QMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDR 364 (449)
T ss_pred cccCCCCC------cCHHH---------HHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCC
Confidence 99643321 01111 1111111111 0135799999999999999999999 56
Q ss_pred CCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce---EEeEEEEEEECCEEEEEcCcccC
Q 015182 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 336 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~---~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+|+|++||.|||||||.+.+...|. ++|+.... ...+|..||++||+||++|+++.
T Consensus 365 ~G~le~Gk~ADlvvld~~~~~~~p~----------~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~~~~~ 423 (449)
T PRK08204 365 IGSLTPGKQADLVLIDATDLNLAPV----------HDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLLG 423 (449)
T ss_pred CcccCCCCcCCEEEEcCCCccccCC----------cChhhhheeccCCCCceEEEECCEEEEECCEecc
Confidence 8999999999999999885422221 23332221 13579999999999999998874
No 52
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.94 E-value=3.2e-25 Score=218.67 Aligned_cols=229 Identities=17% Similarity=0.147 Sum_probs=140.7
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 170 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~ 170 (411)
.|+..+|..+.+.. ...+++++|+++++.|+++|+++.+|+.+. ...+......| .
T Consensus 201 ~g~~~i~~~~~p~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~------- 257 (488)
T PRK06151 201 AHNGLVRGMLAPDR---IETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHG-------------T------- 257 (488)
T ss_pred ccCCceEEEEcCCC---CCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcC-------------C-------
Confidence 46666887766542 235789999999999999999999999643 32211111100 0
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH--------HHHHHHHhHCCCCEEEEcccccccccccccCCCCcce
Q 015182 171 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 242 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~--------~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~ 242 (411)
..++...+.++ .+.++.+.|+... .+ .+.++.+++.|+. +.+||.... ..+.
T Consensus 258 ----~~~~~~~~~g~----l~~r~~l~H~~~l-~~~~~~~~~~~~~~~~la~~g~~--v~~~P~~~~-------~~g~-- 317 (488)
T PRK06151 258 ----TPLEWLADVGL----LGPRLLIPHATYI-SGSPRLNYSGGDDLALLAEHGVS--IVHCPLVSA-------RHGS-- 317 (488)
T ss_pred ----CHHHHHHHcCC----CCCCcEEEEEEEc-CCccccccCCHHHHHHHHhcCCE--EEECchhhh-------hhcc--
Confidence 01222222221 2557777787754 22 1566777777764 446664211 0111
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh---cCCCHHHH
Q 015182 243 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQL 319 (411)
Q Consensus 243 ~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~~a 319 (411)
..+ .+.++++.|+.+++|||..+.. +|. +......+..... ..++++++
T Consensus 318 -~~~---------p~~~l~~~Gv~v~lGtD~~~~~---------~~~---------~~~~~~~~~~~~~~~~~~~~~~~a 369 (488)
T PRK06151 318 -ALN---------SFDRYREAGINLALGTDTFPPD---------MVM---------NMRVGLILGRVVEGDLDAASAADL 369 (488)
T ss_pred -ccc---------cHHHHHHCCCcEEEECCCCCcc---------HHH---------HHHHHHHHHHHhcCCCCCCCHHHH
Confidence 112 2344577799999999964321 110 1111111122222 24799999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|++.+|+|++|+.|||+|+|.+.+ ...+. ++|+..... ..+|..||++|++||++
T Consensus 370 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld~~~~-~~~~~---------~d~~~~lv~~~~~~~v~~v~v~G~~v~~~ 439 (488)
T PRK06151 370 FDAATLGGARALGRDDLGRLAPGAKADIVVFDLDGL-HMGPV---------FDPIRTLVTGGSGRDVRAVFVDGRVVMED 439 (488)
T ss_pred HHHHHHHHHHHhCCCCCcccCCCCcCCEEEEeCCcc-ccCCc---------cCHHHHHHhhCCCCCccEEEECCEEEEEC
Confidence 999999999999995589999999999999998743 22111 223322111 24799999999999999
Q ss_pred CcccC
Q 015182 397 GNHAP 401 (411)
Q Consensus 397 g~~~~ 401 (411)
|+++.
T Consensus 440 g~~~~ 444 (488)
T PRK06151 440 GRLPG 444 (488)
T ss_pred CeecC
Confidence 99874
No 53
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.94 E-value=4.8e-25 Score=214.34 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=139.8
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
.++..+.+.. ...++++.++++++.|+++|+++.+|+.+.......+.+ ....+|
T Consensus 181 ~i~~~~~~~~---~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~------------~~g~~~---------- 235 (435)
T PRK15493 181 MLTTMVAPHS---PYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEA------------QYGKRP---------- 235 (435)
T ss_pred CeEEEEeCCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH------------HhCCCH----------
Confidence 3666665542 235788999999999999999999999775431111110 001111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+ .+.+..+.|+... .+ +.++.+++.|+. +.+||..-.. .+ .-.+|
T Consensus 236 -~~~l~~~Gl----l~~~~~~~H~~~l-~~-~d~~~la~~g~~--v~~~P~sn~~-------l~---~g~~p-------- 288 (435)
T PRK15493 236 -VEYAASCGL----FKRPTVIAHGVVL-ND-NERAFLAEHDVR--VAHNPNSNLK-------LG---SGIAN-------- 288 (435)
T ss_pred -HHHHHHcCC----CCCCcEEEEeecC-CH-HHHHHHHHcCCe--EEEChHHHHH-------Hh---cCccc--------
Confidence 122223222 2556667777654 22 333455566764 4467854211 01 01122
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... +.| .+.++..+++... ...++++++++++|.|||+++|
T Consensus 289 -~~~~~~~Gv~v~lGtD~~~~~~~~-----d~~---------~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg 353 (435)
T PRK15493 289 -VKAMLEAGIKVGIATDSVASNNNL-----DMF---------EEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIG 353 (435)
T ss_pred -HHHHHHCCCeEEEccCccccCCCc-----CHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcC
Confidence 334577899999999974322110 011 1223333332221 2368999999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCee-EeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEF-ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~-~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++++|+|++|+.||||+||.+..+ ..|.. ++.+ ...|.+. ...|..|||+||+|+++|+++.
T Consensus 354 ~~~~G~l~~G~~ADlvv~d~~~~~~~~p~~-d~~~----~lv~~~~--~~~V~~v~V~G~~v~~~g~~~~ 416 (435)
T PRK15493 354 MKQTGSLEVGKCADFITIDPSNKPHLQPAD-EVLS----HLVYAAS--GKDISDVIINGKRVVWNGECKT 416 (435)
T ss_pred CCCCCccCCCCcCCEEEEcCCCCCCcCCcc-ChHH----hEEEeCC--CCCccEEEECCEEEEECCeECC
Confidence 965899999999999999975322 23322 3322 2223221 2369999999999999999874
No 54
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.93 E-value=6.5e-24 Score=204.38 Aligned_cols=305 Identities=19% Similarity=0.216 Sum_probs=172.8
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec-
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (411)
+|||||+|+|+...+.. ...+...+...++++|+||++|++ +..+.....+.+....+.........+..+....
T Consensus 53 ~PG~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~ 131 (387)
T cd01308 53 VPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEV 131 (387)
T ss_pred ccCeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEecCc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCC
Confidence 79999999999653211 112233455678999999999998 4444333444444433322222222222221110
Q ss_pred CC-Cc-c----chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCC------cEEEecCCcccchhh
Q 015182 77 PE-NA-Y----NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERH 144 (411)
Q Consensus 77 ~~-~~-~----~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~ 144 (411)
+. .. + ++..+.++...|..+++ .+ +......+++.++.+.++..+. .+++|.....
T Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~----- 199 (387)
T cd01308 132 PTRTITGSIRKDLLLIDKVIGVGEIAIS---DH----RSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGK----- 199 (387)
T ss_pred CCcCchhhHHHHHHHHHHhcCcceEEEc---CC----CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-----
Confidence 00 00 0 11112221111222222 11 1123456788888888876443 3556654321
Q ss_pred hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE-EEEcCCChHHHHH----HHHHHhHCCCCE
Q 015182 145 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL-HIVHLSDASSSLD----LLMEAKTNGDSI 219 (411)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~i~h~~~~~~~~~----~i~~~~~~g~~i 219 (411)
.++++++++.++. |.++ +++|.... ...+ .++.+ ++|..+
T Consensus 200 --------------------------~~~~~i~~~~~~~-------G~~~~~~~~~~~~-~~~~~~~~~~~~~-~~G~~v 244 (387)
T cd01308 200 --------------------------RALSPIFELIEET-------EIPITQFLPTHIN-RTAPLFEQGVEFA-KMGGTI 244 (387)
T ss_pred --------------------------HHHHHHHHHHHhc-------CCCcceeECCccc-CCHHHHHHHHHHH-HcCCcE
Confidence 2355666666654 5555 77776543 2222 34444 345433
Q ss_pred --EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc---cEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 220 --TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 220 --~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~---~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
....+|+++ ..||++ ....+|.++++|.. ++++||+........ ..+.+ .+.|
T Consensus 245 ~i~~~~~~~~~---------------~~~~~~---~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~--~~g~~--~~~g 302 (387)
T cd01308 245 DLTSSIDPQFR---------------KEGEVR---PSEALKRLLEQGVPLERITFSSDGNGSLPKFD--ENGNL--VGLG 302 (387)
T ss_pred EEECCCCcccc---------------ccCccC---hHHHHHHHHHhCCCCCcEEEEECCCCCcccCc--cCCeE--EecC
Confidence 222334322 123332 25677788888863 489999742210000 00111 2346
Q ss_pred CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc
Q 015182 295 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 374 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~ 374 (411)
.++.+..+..+.......+++++++++++|.|||+++|+.++|+|++|++|||+|||++.
T Consensus 303 ~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~~~G~i~~G~~ADlvv~d~~~-------------------- 362 (387)
T cd01308 303 VGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKDL-------------------- 362 (387)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEcCCC--------------------
Confidence 666666666555444455699999999999999999999548999999999999999651
Q ss_pred CCceEEeEEEEEEECCEEEEEcCcccCC
Q 015182 375 LGRRLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 375 ~g~~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
++..|+++|++|+++|++..+
T Consensus 363 -------~~~~~~~~G~~v~~~~~~~~~ 383 (387)
T cd01308 363 -------DINSVIAKGQIMVRNGKLLVK 383 (387)
T ss_pred -------CEEEEEECCEEEEECCeEeec
Confidence 367899999999999988754
No 55
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.93 E-value=4e-24 Score=209.02 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=140.5
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
+...+|+.+.+.. ...++++.++++++.|+++|+++.+|+.... .....+...| .+|
T Consensus 183 ~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~~------ 240 (443)
T PRK09045 183 HHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHG-------------QRP------ 240 (443)
T ss_pred CCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhC-------------CCH------
Confidence 4556777776543 1357899999999999999999999996532 2221111111 011
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
+ +...+.++ .+.++.+.|+... . .+.++.+++.|+ ...+||..-.. .+ ...+
T Consensus 241 -~----~~l~~~g~----l~~r~~~~H~~~l-~-~~~~~~la~~g~--~i~~~P~~~~~-------~~---~~~~----- 292 (443)
T PRK09045 241 -L----ARLARLGL----LGPRLIAVHMTQL-T-DAEIALLAETGC--SVVHCPESNLK-------LA---SGFC----- 292 (443)
T ss_pred -H----HHHHHcCC----CCCCeEEEEecCC-C-HHHHHHHHHcCC--eEEECHHHHhh-------hc---cCCC-----
Confidence 1 11222222 2557778888765 2 234555556675 44467742110 00 0111
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPA 328 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A 328 (411)
.+.++++.|+.+++|||+.+..... ++| .+..+..++.... ..+++++++++++|.|||
T Consensus 293 ----~~~~l~~~Gv~v~lGtD~~~~~~~~-----~~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~~~A 354 (443)
T PRK09045 293 ----PVAKLLQAGVNVALGTDGAASNNDL-----DLF---------GEMRTAALLAKAVAGDATALPAHTALRMATLNGA 354 (443)
T ss_pred ----cHHHHHHCCCeEEEecCCCCCCCCc-----cHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHH
Confidence 2334567799999999975322110 111 1122222221111 246999999999999999
Q ss_pred HHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 329 KLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 329 ~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+++|+ +++|+|++|+.|||||+|.+.+...+.. +... ..+|.. ...+|..||++||+||++|+++.
T Consensus 355 ~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~-~~~~----~lv~~~--~~~~v~~v~v~G~~v~~~g~~~~ 421 (443)
T PRK09045 355 RALGLDDEIGSLEPGKQADLVAVDLSGLETQPVY-DPVS----QLVYAA--GREQVSHVWVAGKQLLDDRELTT 421 (443)
T ss_pred HHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCcc-ChHh----HhhEeC--CCCCccEEEECCEEEEECCcCCC
Confidence 99999 5689999999999999998853221111 1100 112211 13579999999999999999875
No 56
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.93 E-value=5.3e-24 Score=206.92 Aligned_cols=220 Identities=17% Similarity=0.135 Sum_probs=133.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCC
Q 015182 109 FPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 187 (411)
Q Consensus 109 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~ 187 (411)
...+++++++++++.|+++|+++++|+.+.. .+.....+.| .+| ++.+.+.++
T Consensus 180 ~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~~-----------ie~~~~~g~-- 233 (418)
T PRK06380 180 IYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTG-------------ERP-----------VEHLEKIGF-- 233 (418)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhC-------------CCH-----------HHHHHHCCC--
Confidence 3467899999999999999999999998753 2111111111 011 122222221
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015182 188 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 267 (411)
Q Consensus 188 ~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~ 267 (411)
.+.++.+.|+... . .+.++.+++.|+ .+.+||..... .+. ...+| +.++++.|+.+
T Consensus 234 --l~~~~~~~H~~~l-~-~~d~~~la~~g~--~v~~~P~sn~~-------l~~--~g~~p---------~~~~~~~Gv~v 289 (418)
T PRK06380 234 --LNSKLIAAHCVWA-T-YHEIKLLSKNGV--KVSWNSVSNFK-------LGT--GGSPP---------IPEMLDNGINV 289 (418)
T ss_pred --CCCCeEEEEeecC-C-HHHHHHHHHcCC--EEEECHHHHHh-------hcc--CCCCc---------HHHHHHCCCeE
Confidence 2456667777654 2 234555666665 44577864211 010 01122 33557789999
Q ss_pred EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCC
Q 015182 268 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 344 (411)
Q Consensus 268 ~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ 344 (411)
++|||....+... +.| .+..+...+.... ...++++++++++|.|+|++||++ .|+|++||.
T Consensus 290 ~lGTD~~~~~~~~-----d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~-~G~l~~G~~ 354 (418)
T PRK06380 290 TIGTDSNGSNNSL-----DMF---------EAMKFSALSVKNERWDASIIKAQEILDFATINAAKALELN-AGSIEVGKL 354 (418)
T ss_pred EEcCCCCcCCCCc-----CHH---------HHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCCC-CCccCCCcc
Confidence 9999963221100 001 1112111111111 113899999999999999999994 899999999
Q ss_pred ccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEcCcccC
Q 015182 345 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 345 ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||||++|.+.+...|.. . ++|+..... ..+|..||++|++|+++|+++.
T Consensus 355 ADlvv~d~~~~~~~p~~-~-------~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~ 406 (418)
T PRK06380 355 ADLVILDARAPNMIPTR-K-------NNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNG 406 (418)
T ss_pred CCEEEEeCCCCccCCCC-c-------cChHHheeecCCCCceeEEEECCEEEEECCeECc
Confidence 99999998866555421 0 233332222 2479999999999999999874
No 57
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=3.1e-25 Score=210.43 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 109 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 109 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
...+++++++++++.|++.|+++.+|++..+.+ ..++++..
T Consensus 214 ~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~--------------------------------~~A~~~g~------- 254 (406)
T COG1228 214 GGQFSPEEIRAVLAAALKAGIPVKAHAHGADGI--------------------------------KLAIRLGA------- 254 (406)
T ss_pred ccccCHHHHHHHHHHHHHCCCceEEEecccchH--------------------------------HHHHHhCc-------
Confidence 357899999999999999999999999986532 22222211
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhH--CCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKT--NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 266 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~--~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~ 266 (411)
..+.|.... +.+-++.+++ .|.. .++..|...+.. .. ........+++.|+.
T Consensus 255 -----~s~~H~~~l--d~~~~~~~a~~~~g~~-~~~l~p~~~~~l-------------~e-----~~~~~~~~l~~~GV~ 308 (406)
T COG1228 255 -----KSAEHGTLL--DHETAALLAEKGAGTP-VPVLLPRTKFEL-------------RE-----LDYKPARKLIDAGVK 308 (406)
T ss_pred -----ceehhhhhc--CHhHHHHHhhccCCCc-cccccchhhhhh-------------hc-----ccchhHHHHHHCCCE
Confidence 125565543 2234444445 4443 123333221110 00 112234556778999
Q ss_pred cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 267 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 267 ~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
++++||+.|.+.. ..+...+.+....+||++|+|+++|.|||++||+ ++.|+|++||+|
T Consensus 309 vai~TD~~~~~~~--------------------~~l~~~m~l~~~~gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~A 368 (406)
T COG1228 309 VAIGTDHNPGTSH--------------------GSLALEMALAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDA 368 (406)
T ss_pred EEEEcCCCCCchh--------------------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccCCCcc
Confidence 9999998765421 0222333445566799999999999999999999 789999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
||||||.|++..++.. .+ ...|..||.+|+++|+.+
T Consensus 369 Dlvv~~~dp~~~i~y~----------~~------~~~v~~v~k~G~~~~~~~ 404 (406)
T COG1228 369 DLVVWDGDPLADIPYF----------LG------LNKVEAVIKDGKVVYERG 404 (406)
T ss_pred CEEEEcCCChhhcccc----------cc------CCceEEEEECCEEeecCC
Confidence 9999999864333111 11 236899999999999875
No 58
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.93 E-value=3.8e-23 Score=200.32 Aligned_cols=274 Identities=22% Similarity=0.256 Sum_probs=179.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeee----c
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL----V 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (411)
+|||||+|+|+..+... ....++.++++||||++++| +..+.....+.++.+.+.+ .+..+++.+.... +
T Consensus 8 ~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a-~~~p~~~~~~~p~~vp~t 81 (422)
T cd01295 8 VPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDA-KKTPLDIFWMLPSCVPAT 81 (422)
T ss_pred ccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHH-hCCCceEEEeCCCcCCCC
Confidence 69999999999876532 33457899999999999998 6666667788888777654 3446666443321 1
Q ss_pred CC-C-cc--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 77 PE-N-AY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 77 ~~-~-~~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+. + .. .++++.++.+ .++.++|.+|+|.. . ..+++++.+.++.|+++|+++.+|+.+....
T Consensus 82 ~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~---v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~~---------- 147 (422)
T cd01295 82 PFETSGAELTAEDIKELLEHPEVVGLGEVMDFPG---V-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSGE---------- 147 (422)
T ss_pred CCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCcc---c-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCHH----------
Confidence 11 0 01 2667777776 49999999887652 1 3466889999999999999999999875410
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
.+...+. . |.+ .+|.+.. ..+.++++ ++|+.+. +++.+.
T Consensus 148 --------------------~L~a~l~----a-------Gi~--~dH~~~~--~eea~e~l-~~G~~i~--i~~g~~--- 186 (422)
T cd01295 148 --------------------ELNAYMA----A-------GIS--TDHEAMT--GEEALEKL-RLGMYVM--LREGSI--- 186 (422)
T ss_pred --------------------HHHHHHH----c-------CCC--CCcCCCc--HHHHHHHH-HCCCEEE--EECccc---
Confidence 1222221 1 222 2476653 33444444 5676433 332211
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHHh--cCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALM--DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~--~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
..+...+.+.+. .+..++++||. |... ++. ..| .+....+..
T Consensus 187 -------------------~~~~~~~~~~l~~~~~~~i~l~TD~-~~~~--------~~~--~~g------~~~~v~r~a 230 (422)
T cd01295 187 -------------------AKNLEALLPAITEKNFRRFMFCTDD-VHPD--------DLL--SEG------HLDYIVRRA 230 (422)
T ss_pred -------------------HhhHHHHHHhhhhccCCeEEEEcCC-CCch--------hhh--hcc------hHHHHHHHH
Confidence 011223333333 36788999996 3221 110 011 122223334
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEEC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 389 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~ 389 (411)
...+++++++++++|.|||++++++++|+|+||+.|||+++|.. + ..+|..||++
T Consensus 231 ~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~~~-------~------------------~~~v~~v~~~ 285 (422)
T cd01295 231 IEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILDDL-------E------------------NFNITTVLAK 285 (422)
T ss_pred HHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEECCC-------C------------------CCceEEEEEC
Confidence 56789999999999999999999966899999999999999821 0 1258899999
Q ss_pred CEEEEEc
Q 015182 390 GNLVYKE 396 (411)
Q Consensus 390 G~~v~~~ 396 (411)
|++||+.
T Consensus 286 G~~v~~r 292 (422)
T cd01295 286 GIAVVER 292 (422)
T ss_pred CeEEEEe
Confidence 9999975
No 59
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.93 E-value=5.7e-24 Score=207.16 Aligned_cols=311 Identities=18% Similarity=0.167 Sum_probs=178.1
Q ss_pred CCceeecccccCCCCC------------------C-------ccCC----hHHHHHHHHcCCceeEecCCCCCCCC--CC
Q 015182 1 MPGLIDVHAHLDDPGR------------------T-------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TI 49 (411)
Q Consensus 1 lPGlID~H~H~~~~~~------------------~-------~~~~----~~~~~~~a~~~GvTtv~d~~~~~~~~--~~ 49 (411)
+|||||+|+|+..... . +.++ +..+++.++++|+|+++.+. +..+. ..
T Consensus 74 ~Pg~id~H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~ 152 (438)
T PRK07583 74 WPCFVDMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAI 152 (438)
T ss_pred cCCcccceeccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCccc
Confidence 6999999999854200 0 1233 55677889999999888765 32111 22
Q ss_pred CHHHHHHHHHHHhcCCceEEEEEeeecC--CCccchHHHHHHH-HC-CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 50 STETLKLKVDAAEKRIYVDVGFWGGLVP--ENAYNASALEALL-NA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
..+.+.+..+..... +++........ ...+...++.+.+ +. |+.+.+.++.+ -+++.+..+++.|+
T Consensus 153 ~~~~i~~~~~~~~~~--~~~~~v~~~p~~~~~~~~~~eL~~~v~~~~gv~g~~~~~~~--------~~d~~l~~i~~lA~ 222 (438)
T PRK07583 153 SWEVFAELREAWAGR--IALQAVSLVPLDAYLTDAGERLADLVAEAGGLLGGVTYMNP--------DLDAQLDRLFRLAR 222 (438)
T ss_pred HHHHHHHHHHHhhcc--CeEEEEEecChhhccCchHHHHHHHHHHcCCEEeCCCCCCC--------CHHHHHHHHHHHHH
Confidence 333444444433332 33222110100 0111223455544 33 56665544321 15689999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-- 203 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~-- 203 (411)
++|+++.+|+.+...... ..+..+.+.+.+.+ ...++++.|+....
T Consensus 223 ~~G~~v~vH~~E~~~~~~---------------------------~~l~~~~~~~~~~G-----~~~~v~i~H~~~l~~~ 270 (438)
T PRK07583 223 ERGLDLDLHVDETGDPAS---------------------------RTLKAVAEAALRNG-----FEGKVTCGHCCSLAVQ 270 (438)
T ss_pred HhCCCcEEeECCCCCchH---------------------------HHHHHHHHHHHHhC-----CCCCEEEEeccchhcC
Confidence 999999999965322110 11223333333331 13468899987530
Q ss_pred ---HHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 204 ---SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 204 ---~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
...++++.+++.|+.+ .+||...+..... .....|+.+... .+.++++.|+.+++|||+.+
T Consensus 271 ~~~~~~~~i~~la~~gv~v--v~~P~~~~~l~~~------~~~~~p~~~~~~---~v~~l~~aGV~valGtD~~~----- 334 (438)
T PRK07583 271 PEEQAQATIALVAEAGIAI--VSLPMCNLYLQDR------QPGRTPRWRGVT---LVHELKAAGIPVAVASDNCR----- 334 (438)
T ss_pred CHHHHHHHHHHHHHcCCeE--EECcchhhhhcCC------CcCCCCCCCCcc---hHHHHHHCCCeEEEEeCCCC-----
Confidence 1146788888888755 4677643221100 001123344332 34445666999999999753
Q ss_pred hhcccCCccccCCC-CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeC
Q 015182 281 KLLDEGNFLKAWGG-ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 281 k~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
++|. |.| ...++... .... ....+.+++++++++|.|||+++|++.+|+|++|+.|||||+|.++...+
T Consensus 335 -----d~~~--p~g~~~~~~~~~-~a~~-~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~- 404 (438)
T PRK07583 335 -----DPFY--AYGDHDMLEVFR-EAVR-ILHLDHPYDDWPAAVTTTPADIMGLPDLGRIAVGAPADLVLFKARSFSEL- 404 (438)
T ss_pred -----CCCC--CCCCcCHHHHHH-HHHH-HHhcCCcHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCHHHH-
Confidence 1222 223 22222111 1111 11236789999999999999999995489999999999999998853221
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
.. ....+..||.+|++|+...
T Consensus 405 -----~~------------~~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 405 -----LS------------RPQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred -----Hh------------cCCCccEEEECCEEecccC
Confidence 10 0224678999999987653
No 60
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.93 E-value=1.3e-23 Score=207.18 Aligned_cols=273 Identities=21% Similarity=0.231 Sum_probs=175.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeee-cC--
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VP-- 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 77 (411)
+|||||+|+|+..+... .+++ .+.++.+||||++++| ++.+.....+.++.+.+.++ +..+++.+.... .+
T Consensus 49 ~PG~ID~H~Hi~~~~~~-~~~~---~~~al~~GvTtvv~~P-~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~ 122 (552)
T TIGR01178 49 VPGFIDAHIHIESSMLT-PSEF---AKLVLPHGVTTVVSDP-HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPAL 122 (552)
T ss_pred EeCeEecccccCCCCCC-hhHH---HHHHHCCCEEEEEcCC-CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCC
Confidence 69999999999876543 2323 4678999999999999 77676677888888877655 567787544321 01
Q ss_pred --C-Ccc--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 78 --E-NAY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 78 --~-~~~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+ +.. ..+++.++.+ .|+.++|.+|+|.+ . ...++.+.+.++.+++.|+.+..||......
T Consensus 123 ~~e~~g~~~~~~~i~~~~~~~~V~glke~m~~~~---v-~~~d~~~l~~i~~a~~~g~~I~gHap~l~~~---------- 188 (552)
T TIGR01178 123 QFETSGAVLTAEDIDELMELDEVLGLAEVMDYPG---V-INADIEMLNKINSARKRNKVIDGHCPGLSGK---------- 188 (552)
T ss_pred cccCCCCccCHHHHHHHHcCCCccEEEEEecchh---h-cCCCHHHHHHHHHHHhCCCEEEecCCCCCHH----------
Confidence 1 111 3567777775 59999999998753 2 2234444455588999999999999853210
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
.+... .. . |.. ..|.... .+...+..++|..+..--
T Consensus 189 --------------------eL~~~---~~-a-------Gi~--~dHe~~s---~~ea~e~~~~Gm~~~ir~-------- 224 (552)
T TIGR01178 189 --------------------LLNKY---IS-A-------GIS--NDHESTS---IEEAREKLRLGMKLMIRE-------- 224 (552)
T ss_pred --------------------HHHHH---HH-c-------CCC--CCcCcCC---HHHHHHHHHCCCEEEEeC--------
Confidence 11111 11 1 322 5675542 333444456676544210
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHH--hcCCccEEcCCCC-CCChhhhhcccCCccccCCCCchhhhHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDGHIDMLSSDHS-PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 308 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l--~~G~~~~~~sD~~-p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (411)
+... .+...+...+ ..+..++++||.. |... + . +..+....+.
T Consensus 225 -------gs~~---------~n~~~~~~~~~~~~~~~~~l~TD~~~~~~~---------~---~------~g~l~~~v~~ 270 (552)
T TIGR01178 225 -------GSAA---------KNLEALHPLINEKNCRSLMLCTDDRHVNDI---------L---N------EGHINHIVRR 270 (552)
T ss_pred -------Cccc---------cCHHHHHHHHhhcCCceEEEEeCCCChhHH---------H---h------cCCHHHHHHH
Confidence 1100 0112222222 2467899999931 1110 1 0 1123333444
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~ 388 (411)
..+.+++++++++++|.|||+++|+++.|+|++|+.|||+++|... ..+|..||+
T Consensus 271 ai~~g~~~~~Al~maT~npA~~lgl~~~G~I~pG~~ADlvvl~~l~-------------------------~~~v~~v~~ 325 (552)
T TIGR01178 271 AIEHGVDPFDALQMASINPAEHFGIDVGGLIAPGDPADFVILKDLR-------------------------NFKVNKTYV 325 (552)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEECCCC-------------------------CceEEEEEE
Confidence 4567899999999999999999999668999999999999998310 125889999
Q ss_pred CCEEEEEc
Q 015182 389 RGNLVYKE 396 (411)
Q Consensus 389 ~G~~v~~~ 396 (411)
+|++|.++
T Consensus 326 ~G~~v~~~ 333 (552)
T TIGR01178 326 KGKLLDLN 333 (552)
T ss_pred CCEEEccc
Confidence 99999997
No 61
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.93 E-value=2.6e-23 Score=200.42 Aligned_cols=311 Identities=22% Similarity=0.250 Sum_probs=172.9
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+...+.. ...+...+.++++++||||++|++ +..+.....+.+.+..+.... ..++.....+...
T Consensus 55 ~PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~-~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~~ 132 (388)
T PRK10657 55 VPGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL-GTDGITRSMESLLAKARALEE-EGISAYMYTGSYH 132 (388)
T ss_pred cccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC-CCCCCCCCHHHHHHHHHHHHh-hCCEEEEEecCCC
Confidence 69999999998732111 123455678899999999999998 543333334334433322221 2233332211111
Q ss_pred CCc-cchHHHHHH--HHCCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCC------cEEEecCCcccchhhhhh
Q 015182 78 ENA-YNASALEAL--LNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 78 ~~~-~~~~~~~~~--~~~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~ 147 (411)
... ...+.+.+. ....+.++ |+.+.+. .....+.+++.++.+.++..+. ++++|+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~---~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~------- 202 (388)
T PRK10657 133 VPVRTITGSIRKDIVLIDKVIGVGEIAISDH---RSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKK------- 202 (388)
T ss_pred CCchhhhcchhhceehhhhhhCcceeeeccC---CCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchH-------
Confidence 000 000001110 00111222 3322221 1123477888888777765444 78888763211
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 227 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~ 227 (411)
.++.+.++.++.|. ...++...|+....+..+...++.++|..+....
T Consensus 203 ------------------------~l~~v~~~l~~~Gv----~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~---- 250 (388)
T PRK10657 203 ------------------------GLQPLFELLENTDI----PISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTT---- 250 (388)
T ss_pred ------------------------HHHHHHHHHHhcCC----CcceeeCcccCCCHHHHHHHHHHHHcCCeEEEec----
Confidence 12222222222211 1223455565542022233333334565442220
Q ss_pred ccccccccCCCCcceEEcCCCCCh---hhHHHHHHHHhcCC---ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhH
Q 015182 228 LAFSAEEIPDGDTRFKCAPPIRDA---ANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 301 (411)
Q Consensus 228 l~~~~~~~~~~~~~~~~~p~lr~~---~~~~~l~~~l~~G~---~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~ 301 (411)
..|+++.. .+...+|+++++|. .++++||+....+.... ...+ .+.|..+....
T Consensus 251 ----------------~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~--~g~~--~~~g~~~~~~l 310 (388)
T PRK10657 251 ----------------SDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDE--DGNL--VGLGVGSVESL 310 (388)
T ss_pred ----------------CCCcccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCceecc--CCCE--eccCcCchhhH
Confidence 11222221 34578999999998 45999997533211000 0011 34566666655
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEe
Q 015182 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 381 (411)
Q Consensus 302 ~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~ 381 (411)
+..+.......+++++++++++|.|||+++++.++|+|++|+.|||++|| +. .
T Consensus 311 ~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~~G~l~~G~~AD~vv~~-~~--------------------------~ 363 (388)
T PRK10657 311 LEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLVLD-DD--------------------------L 363 (388)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEC-CC--------------------------C
Confidence 55555444577899999999999999999999449999999999999999 31 0
Q ss_pred EEEEEEECCEEEEEcCcccCC
Q 015182 382 KVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 382 ~v~~ti~~G~~v~~~g~~~~~ 402 (411)
.|..|+++|++|+++|+++.+
T Consensus 364 ~~~~~~~~G~~v~~~~~~~~~ 384 (388)
T PRK10657 364 RIEQVIAKGKLMVKDGKALVK 384 (388)
T ss_pred CEEEEEECCEEEEECCEEecc
Confidence 478999999999999998865
No 62
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.93 E-value=6.6e-23 Score=194.49 Aligned_cols=308 Identities=22% Similarity=0.243 Sum_probs=174.9
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec-
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (411)
+|||||+|+|+...+.+ ...+...+...++++||||++|+. .+.......+.+.++.+.... ..++...+.+..
T Consensus 55 ~PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~-g~~~~~~~~~~~~a~~~al~~-~Gir~~~~~g~~~ 132 (389)
T TIGR01975 55 VPGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL-GTDGITRHMESLLAKARALEE-EGISCYMLTGAYH 132 (389)
T ss_pred ccCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc-ccCccccChhhHHHHHHHHHH-hCCEEEEEccccc
Confidence 69999999998653211 112233457778999999999986 443322333322222221121 122222211111
Q ss_pred -C---CCccchHHHHHHHHCCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCC----Cc--EEEecCCcccchhhh
Q 015182 77 -P---ENAYNASALEALLNAGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYK----RP--LLVHAEMEKGSERHV 145 (411)
Q Consensus 77 -~---~~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~ 145 (411)
+ -+.....++.. ..-+.|+| +-++..- ....+.++|+++.+.|+..| ++ +++|..+...
T Consensus 133 ~p~~t~t~~~~~d~~~--~d~iiG~~~ia~sd~r---~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~----- 202 (389)
T TIGR01975 133 VPSRTITGSVESDLLL--IDKVIGVGEIAISDHR---SAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKR----- 202 (389)
T ss_pred CCCcccccchhhheee--ehhhcccceEEEccCc---CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchh-----
Confidence 0 11111122211 12456664 6565432 13457899999999999998 99 9999876431
Q ss_pred hhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEE---EcCCChHHHHH-HHHHHhHCCCCEEE
Q 015182 146 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI---VHLSDASSSLD-LLMEAKTNGDSITV 221 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i---~h~~~~~~~~~-~i~~~~~~g~~i~~ 221 (411)
.++.++++.++. +.+.|. .|+.....-++ .++.++ +|..+-.
T Consensus 203 --------------------------~l~~l~~~~~~~-------di~~~~f~pth~~r~~~l~~~~i~~~~-~gg~iDv 248 (389)
T TIGR01975 203 --------------------------ALQPIYELVENT-------DVPITQFLPTHINRNVPLFEAGLEFAK-KGGTIDL 248 (389)
T ss_pred --------------------------hHHHHHHHHHhc-------CCChhheecCccCCCHHHHHHHHHHHH-hCCcEEE
Confidence 245556666654 333332 35543202223 344444 4433332
Q ss_pred Eccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc---EEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 222 ETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID---MLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 222 ~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~---~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
. .|.. .++.. . +....+.+..++++|+.. +++||.......... .-.....|+.+
T Consensus 249 ~-~~~~~~~l~~-------------~---~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~----~g~~~~~g~g~ 307 (389)
T TIGR01975 249 T-SSIDPQFRKE-------------G---EVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDE----NGELTGLGVGS 307 (389)
T ss_pred e-CCCCccchhc-------------c---ccChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccc----ccccccCCcCc
Confidence 2 1111 00000 0 011244667778889864 899996421110000 00012345555
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCc
Q 015182 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 377 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~ 377 (411)
....+..+..++...+++++++++++|.|||++||++++|+|++|++|||+|||.+.
T Consensus 308 ~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~~~G~I~~G~~ADlvild~~~----------------------- 364 (389)
T TIGR01975 308 FETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPGNDADLVVLDPDL----------------------- 364 (389)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCeECCCCcCCEEEEcCCC-----------------------
Confidence 544444433334445699999999999999999999768999999999999999551
Q ss_pred eEEeEEEEEEECCEEEEEcCcccCC
Q 015182 378 RLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 378 ~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
.+..|+.+|++++++|++..+
T Consensus 365 ----~i~~v~~~G~~v~~~g~~~~~ 385 (389)
T TIGR01975 365 ----RIHSVIARGKLMVKDGKACVK 385 (389)
T ss_pred ----CEEEEEECCEEEEECCEEEec
Confidence 367889999999999998754
No 63
>PRK09237 dihydroorotase; Provisional
Probab=99.92 E-value=4.1e-23 Score=198.10 Aligned_cols=302 Identities=20% Similarity=0.216 Sum_probs=172.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+...+. ..+. +..+.++++||||+++++ +..+ ...+.+....... .. ..++++.+++..++
T Consensus 52 ~PG~iD~H~H~~~~~~-~~~~--~~~~~~~~~G~Ttv~~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~ 125 (380)
T PRK09237 52 SPGWIDLHVHVYPGST-PYGD--EPDEVGVRSGVTTVVDAG-SAGA--DNFDDFRKLTIEASKTRVLAFLNISRIGLLAQ 125 (380)
T ss_pred ecCEEEeeecCCCCCC-ccCC--CHHHHHHhCCcCEEEECC-CCCC--CCHHHHHHHHHhhhCcEEEEEEeeeccccccc
Confidence 6999999999985432 2222 567889999999999998 4433 5666666655433 21 12333443332222
Q ss_pred CCc-----cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 ENA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~~-----~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
... -..++++++.+ .++.++|.++.+.....+ ..++ ++.....+++.|+++.+|+++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~~~-~~~~--~~~~~~~a~~~g~~v~~H~~~~~~~-------- 194 (380)
T PRK09237 126 DELADLEDIDADAVAEAVKRNPDFIVGIKARMSSSVVGDN-GIEP--LELAKAIAAEANLPLMVHIGNPPPS-------- 194 (380)
T ss_pred chhcCHhHCCHHHHHHHHHhCcCcEEEEEEEEeccccccc-CCch--HHHHHHHHHhcCCCEEEEcCCCCCC--------
Confidence 111 12455666664 579999999876422221 1233 3444444568999999999765321
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh---------HHHHHHHHHHhHCCCCEE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---------SSSLDLLMEAKTNGDSIT 220 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~---------~~~~~~i~~~~~~g~~i~ 220 (411)
..++..+... + . .+.|+... ....+.+.++.++|+.+
T Consensus 195 -----------------------~~~l~~~l~~--------g-~-~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~- 240 (380)
T PRK09237 195 -----------------------LEEILELLRP--------G-D-ILTHCFNGKPNRILDEDGELRPSVLEALERGVRL- 240 (380)
T ss_pred -----------------------HHHHHhhccC--------C-C-EEEecCCCCCCCccCCCCcchHHHHHHHHCCEEE-
Confidence 1122222221 2 1 24555432 01224455555566433
Q ss_pred EEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 221 VETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 221 ~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
++... ... .+...+.+.+++|+ +.+++||..+... + ..+..
T Consensus 241 -~ig~g-------------~~~---------~~~~~~~~l~~~g~~~~~l~tD~~~~~~---------~-----~~~~~- 282 (380)
T PRK09237 241 -DVGHG-------------TAS---------FSFKVAEAAIAAGILPDTISTDIYCRNR---------I-----NGPVY- 282 (380)
T ss_pred -EecCC-------------CCc---------ccHHHHHHHHHCCCCceEEECCCCCCCc---------c-----cchHh-
Confidence 22210 000 01122334566785 5689999654321 0 00111
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
.+...+..+.+.+++++++++++|.|||++||++++|+|++|+.|||+++|.+... .+.. +... +..+.+.
T Consensus 283 -~l~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~G~l~~G~~ADlvv~~~~~~~-~~~~-d~~~----~~~~~~~-- 353 (380)
T PRK09237 283 -SLATVMSKFLALGMPLEEVIAAVTKNAADALRLPELGRLQVGSDADLTLFTLKDGP-FTLT-DSEG----DSLIGER-- 353 (380)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCCCcCCCCCcCCEEEEeCCCCC-cccc-CCCC----CEEEecC--
Confidence 12333344456789999999999999999999966899999999999999965322 1111 1110 1111111
Q ss_pred EeEEEEEEECCEEEEEcCccc
Q 015182 380 SGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~g~~~ 400 (411)
...|.+||++||+||.+-...
T Consensus 354 ~~~~~~~~v~G~~~~~~~~~~ 374 (380)
T PRK09237 354 LLTPLATVRGGKVVLTEQGSA 374 (380)
T ss_pred CCcceEEEECCEEEEccCccc
Confidence 247999999999999875443
No 64
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=1.2e-23 Score=204.36 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.+++++++++++.|+++|+++.+|+.+... ........ ..+| ++.+.+.++
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~-------------g~~~-----------~~~l~~~G~---- 236 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKY-------------GKSP-----------VVLLDEIGF---- 236 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHh-------------CcCH-----------HHHHHHcCC----
Confidence 478999999999999999999999975432 11111110 0111 122222222
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ ...+||..-.. .+. -.+| +.++++.|+.+++
T Consensus 237 l~~~~~~~H~~~l--~~~~l~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 293 (424)
T PRK08393 237 LNEDVIAAHGVWL--SSRDIRILASAGV--TVAHNPASNMK-------LGS---GVMP---------LRKLLNAGVNVAL 293 (424)
T ss_pred CCCCcEEEEeecC--CHHHHHHHHhcCC--EEEECHHHHHh-------hcc---CCCC---------HHHHHHCCCcEEE
Confidence 2556667777754 2244556666675 44567753110 010 1122 2345677999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh---cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCcc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 346 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~AD 346 (411)
|||..+..... +.| .+..+...+..... ..++++++++++|.|||+++|++ .|+|++|+.||
T Consensus 294 GtD~~~~~~~~-----d~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~-~G~l~~G~~AD 358 (424)
T PRK08393 294 GTDGAASNNNL-----DML---------REMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGLK-AGVIKEGYLAD 358 (424)
T ss_pred ecCCCccCCch-----hHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccC
Confidence 99963221100 001 11222211211111 12678999999999999999996 69999999999
Q ss_pred EEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 347 lvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||++|.+.+...+.. ++.+... ++++ .++|..||++|++||++|+++.
T Consensus 359 lvvld~~~~~~~~~~-~~~~~~~-~~~~-----~~~v~~v~v~G~~v~~~g~~~~ 406 (424)
T PRK08393 359 IAVIDFNRPHLRPIN-NPISHLV-YSAN-----GNDVETTIVDGKIVMLDGEVLT 406 (424)
T ss_pred EEEEeCCCCCcCCCC-ChHHHee-eeCC-----CCCeeEEEECCEEEEECCeECC
Confidence 999999876665544 3333222 2222 3579999999999999999863
No 65
>PRK12393 amidohydrolase; Provisional
Probab=99.92 E-value=2.4e-23 Score=203.79 Aligned_cols=219 Identities=14% Similarity=0.133 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++.|+++|+++.+|+.+... ++..... ...+| ++...+.++
T Consensus 214 ~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~-------------~g~~~-----------~~~l~~~g~---- 265 (457)
T PRK12393 214 SLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREK-------------YGMTP-----------VQFVAEHDW---- 265 (457)
T ss_pred CcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH-------------hCCCH-----------HHHHHHcCC----
Confidence 578899999999999999999999975322 1111110 01111 111222221
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ .+.+||..... .+. ..+| +.++++.|+.+++
T Consensus 266 l~~~~~~~H~~~l--~~~d~~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 322 (457)
T PRK12393 266 LGPDVWFAHLVKL--DAEEIALLAQTGT--GIAHCPQSNGR-------LGS---GIAP---------ALAMEAAGVPVSL 322 (457)
T ss_pred CCCCeEEEEEecC--CHHHHHHHHHcCC--eEEECchhhhh-------hcc---cCCC---------HHHHHHCCCeEEE
Confidence 2556767777754 2334555556675 44577853110 011 1232 3455778999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH--HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG--RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 347 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADl 347 (411)
|||..+.+... ++|. +..+....... ....++++++++++|.|||+++|++++|+|++|+.|||
T Consensus 323 GtD~~~~~~~~-----d~~~---------~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADl 388 (457)
T PRK12393 323 GVDGAASNESA-----DMLS---------EAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADL 388 (457)
T ss_pred ecCCcccCCCc-----cHHH---------HHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCE
Confidence 99964321100 1110 11111111111 11348999999999999999999955899999999999
Q ss_pred EEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 348 vv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+|+|.+.++..+.. +.. ++++.... ..+|..||++|++||++|+++.
T Consensus 389 vv~d~~~~~~~~~~-~~~-----~~~~~~~~-~~~v~~v~v~G~~v~~~~~~~~ 435 (457)
T PRK12393 389 AIYDLDDPRFFGLH-DPA-----IAPVACGG-PAPVKALLVNGRPVVENGAIPG 435 (457)
T ss_pred EEEeCCCcccCCCC-Cch-----hhhhccCC-CCCeeEEEECCEEEEECCccCC
Confidence 99999876655432 211 23333221 4679999999999999998864
No 66
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.92 E-value=2.2e-23 Score=202.77 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=138.5
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~ 176 (411)
++..+.+.. ...+++++++++++.|+++|+++.+|+.+.......+... ...+ .
T Consensus 175 v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~------------~G~~-----------~ 228 (430)
T PRK06038 175 IKVMYGPHA---PYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQ------------YGMC-----------S 228 (430)
T ss_pred eEEEEeCCc---CccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHH------------hCCC-----------H
Confidence 444444432 2367899999999999999999999998865432222110 0001 1
Q ss_pred HHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHH
Q 015182 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 256 (411)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~ 256 (411)
++...+.++ .+.++.+.|+... .+ +.++.+++.|+.+ .+||...... + ...+|
T Consensus 229 i~~l~~~g~----l~~r~~~~H~~~l-~~-~~~~~la~~g~~v--~~~P~~n~~~-------~---~~~~p--------- 281 (430)
T PRK06038 229 VNYLDDIGF----LGPDVLAAHCVWL-SD-GDIEILRERGVNV--SHNPVSNMKL-------A---SGIAP--------- 281 (430)
T ss_pred HHHHHHcCC----CCCCeEEEEEecC-CH-HHHHHHHhcCCEE--EEChHHhhhh-------c---cCCCC---------
Confidence 222223221 2567777887765 22 3466666777644 4677532110 0 11122
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH---HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 257 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG---RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 257 l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
+.++++.|+.+++|||..+.... .++| .+.....+.... ...+++++++++++|.|||+++|+
T Consensus 282 ~~~~~~~Gv~v~lGtD~~~~~~~-----~d~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~ 347 (430)
T PRK06038 282 VPKLLERGVNVSLGTDGCASNNN-----LDMF---------EEMKTAALLHKVNTMDPTALPARQVLEMATVNGAKALGI 347 (430)
T ss_pred HHHHHHCCCeEEEeCCCCccCCC-----cCHH---------HHHHHHHHHhhhccCCCCcCCHHHHHHHHhHHHHHHhCC
Confidence 33557779999999996422110 0111 011111111111 124689999999999999999999
Q ss_pred CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 334 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 334 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ .|+|++|+.||||++|.+.+...|.. +... ..+|.+. ...|..||++|++||++|+++.
T Consensus 348 ~-~G~l~~G~~ADlvvld~~~~~~~p~~-~~~~----~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~ 407 (430)
T PRK06038 348 N-TGMLKEGYLADIIIVDMNKPHLTPVR-DVPS----HLVYSAS--GSDVDTTIVDGRILMEDYKVLC 407 (430)
T ss_pred C-CCccCCCcccCEEEEeCCCCccCCCC-ChHH----heeEeCC--CCceeEEEECCEEEEECCeECC
Confidence 6 69999999999999998865433322 1111 1122211 2369999999999999999864
No 67
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.92 E-value=5.3e-23 Score=200.43 Aligned_cols=226 Identities=13% Similarity=0.068 Sum_probs=138.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
++..+.+.. ...++++.++++.+.|+++|+++.+|+.+... ......+. ..+|
T Consensus 189 i~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~-------------g~~~---------- 242 (441)
T TIGR03314 189 VEAHIGAHA---PFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKY-------------GKDI---------- 242 (441)
T ss_pred eEEEEecCC---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHc-------------CCCH----------
Confidence 555555432 23578999999999999999999999977532 11111111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+. +.+..+.|+... +.+.++.+++.|+. +.+||..-... + .-.+|+
T Consensus 243 -~~~l~~~G~l----~~~~~~~H~~~~--~~~d~~~la~~g~~--v~~cP~sn~~l-------~---~G~~p~------- 296 (441)
T TIGR03314 243 -VERLADFGLL----GSKTLAAHCIYL--SDREIELLNETDTF--VVHNPESNMGN-------A---VGYNPV------- 296 (441)
T ss_pred -HHHHHHCCCC----CCCeEEEEEecC--CHHHHHHHHHcCCc--EEECHHHHhhh-------c---cCCCCH-------
Confidence 2222333322 556666776654 22344555566754 45678431110 1 012332
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc--CCCHHHHHHHHhHhHHHHhC-
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY--GVTLEQLASWWSERPAKLAG- 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~l~~~~al~~~T~n~A~~lg- 332 (411)
.++++.|+.++||||..+.. .| -+.++...++..... ...+.++++++|.++|++++
T Consensus 297 --~~~~~~Gv~v~LGtD~~~~d---------~~---------~em~~a~~~~~~~~~~~~~~~~~~~~~aT~~ga~al~~ 356 (441)
T TIGR03314 297 --LRMFKNGILLGLGTDGYTSD---------MF---------ESLKFANFKHKDAGGDLNAAWPESPAMLFENNNEIAER 356 (441)
T ss_pred --HHHHHCCCEEEEcCCCCCcC---------HH---------HHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34577799999999964321 11 122332222221111 22467899999999999997
Q ss_pred -C-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 -Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 -~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ .++|+|++|+.|||+++|.+.++.++.. ++.+ .++.+.. .++|..||++|++||++|+++.
T Consensus 357 ~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~-~~~~-----~lv~~~~-~~~V~~v~V~G~~v~~~~~~~~ 420 (441)
T TIGR03314 357 NFGAKFGRLEPGAKADLIIVDYNAPTPLTAD-NING-----HILFGMN-GGSVDSTMVNGKVVMEDREFLH 420 (441)
T ss_pred HhCCCCCCCCCCCcccEEEEcCCCCeeechh-hccc-----cceecCC-CCeeEEEEECCEEEEECCcccc
Confidence 3 4689999999999999999887766644 3332 2332222 5689999999999999999864
No 68
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.92 E-value=5.6e-23 Score=201.39 Aligned_cols=225 Identities=17% Similarity=0.159 Sum_probs=133.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
+++.+.+. ....++++.++++++.| ++|+++.+|+.+.. .+....... ..+|
T Consensus 201 ~~~~~~p~---~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~-------------g~~~---------- 253 (456)
T PRK09229 201 ARLGLAPH---SLRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWS-------------GARP---------- 253 (456)
T ss_pred eEEEEeCC---CCCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHc-------------CCCH----------
Confidence 44444443 22357899999999999 99999999996532 222111111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.+ ..+.++.+.|+... .+ +.++.+++.|+ .+.+||..... .+ ...+|
T Consensus 254 -~~~l~~~g----~l~~~~~l~H~~~l-~~-~d~~~la~~g~--~v~~~P~sn~~-------lg---~g~~p-------- 306 (456)
T PRK09229 254 -VEWLLDHA----PVDARWCLVHATHL-TD-AETARLARSGA--VAGLCPTTEAN-------LG---DGIFP-------- 306 (456)
T ss_pred -HHHHHHcC----CCCCCeEEEeeccC-CH-HHHHHHHHcCC--eEEECchhhhh-------hc---CCCCC--------
Confidence 11122221 12567788888765 22 34555556675 45578853110 01 11222
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhH
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSE 325 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~l~~~~al~~~T~ 325 (411)
+.++++.|+.+++|||..+.. ++|. +.+.....+... ++.+++.++|+++|.
T Consensus 307 -~~~l~~~Gv~v~lGtD~~~~~--------d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~ 368 (456)
T PRK09229 307 -AVDYLAAGGRFGIGSDSHVSI--------DLVE---------ELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALA 368 (456)
T ss_pred -HHHHHHCCCeEEEecCCCCCC--------CHHH---------HHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Confidence 234577899999999953211 1110 111111111110 135689999999999
Q ss_pred hHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCC--CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 326 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN--DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 326 n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
|+|+++|+ .+|+|++||.|||||+|.+.+...+. + ++.. ...|.+ ...+|..|||+||+||++|++++
T Consensus 369 ~gA~alg~-~~GsLe~Gk~ADlvvld~~~~~~~~~~~~-~~~~----~lv~~~--~~~~V~~v~V~G~~v~~~g~~~d 438 (456)
T PRK09229 369 GGAQALGR-AIGGLAVGARADLVVLDLDHPALAGREGD-ALLD----RWVFAG--GDAAVRDVWVAGRWVVRDGRHRL 438 (456)
T ss_pred HHHHHhCC-CcCCcCCCCccCEEEEeCCCccccCCChh-hHHH----HHhhcC--CCCCeeEEEECCEEEEECCccCC
Confidence 99999999 68999999999999999886422221 1 1111 111211 13479999999999999998764
No 69
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.92 E-value=1.3e-22 Score=198.37 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=135.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh-hhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH-VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
+...+.+.. ...++++.++++.+.|+++|+++++|+.+....... ..+. ..+|
T Consensus 190 v~~~~~p~~---~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~-------------g~~~---------- 243 (442)
T PRK07203 190 VEAMFGLHA---SFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKY-------------GKDI---------- 243 (442)
T ss_pred eEEEEccCC---CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHc-------------CCCH----------
Confidence 445555432 235688999999999999999999998775432111 1111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+ .+.+..+.|+... .+ +.++.+++.|+. +.+||..-.. . + .-.+|
T Consensus 244 -v~~l~~~Gl----l~~~~~~~H~~~~-~~-~d~~~la~~g~~--v~~~P~sn~~------l-~---~g~~p-------- 296 (442)
T PRK07203 244 -VERLADFGL----LGEKTLAAHCIYL-SD-EEIDLLKETDTF--VVHNPESNMG------N-A---VGYNP-------- 296 (442)
T ss_pred -HHHHHhCCC----CCCCcEEEEeecC-CH-HHHHHHHhcCCe--EEECchhhhh------c-c---cCCCC--------
Confidence 222333322 2556667777654 22 334445566754 4567853111 0 1 01122
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH--hcCCCHHHHHHHHhHhHHHHhC-
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASWWSERPAKLAG- 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~l~~~~al~~~T~n~A~~lg- 332 (411)
+++++++|+.+++|||..... .| -+.++...++... ....+++++++++|.|||+++|
T Consensus 297 -~~~~~~~Gv~v~lGtD~~~~d---------~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg~ 357 (442)
T PRK07203 297 -VLEMIKNGILLGLGTDGYTSD---------MF---------ESYKVANFKHKHAGGDPNVGWPESPAMLFENNNKIAER 357 (442)
T ss_pred -HHHHHHCCCeEEEcCCCCCcc---------HH---------HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677899999999963211 11 1122222222211 1124578999999999999999
Q ss_pred -C-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 -Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 -~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ ++.|+|++||.||||++|.+.++..+.. ++.+ ...|... ...|..||++|++||++|+++.
T Consensus 358 ~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~----~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~ 421 (442)
T PRK07203 358 YFGAKFGILEEGAKADLIIVDYNPPTPLNED-NING----HILFGMN--GGSVDTTIVNGKVVMEDRKFLN 421 (442)
T ss_pred hcCCCCCCCCCCCccCEEEEcCCCCeecCcc-cccc----ceEeecC--CCceEEEEECCEEEEECCcccc
Confidence 4 4689999999999999998866544432 2211 1122211 4579999999999999999864
No 70
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.92 E-value=1.9e-23 Score=202.66 Aligned_cols=295 Identities=25% Similarity=0.300 Sum_probs=170.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHHHH--HHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTETL--KLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+ ..++++++||||+++++. ++.+.......+ ..+.+.. ....++++++..
T Consensus 127 ~PGlIDtHvH~~~P~---------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa-~~~~in~g~~g~ 196 (567)
T TIGR01792 127 TAGGIDTHVHYISPQ---------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAA-DGLPINFGFTGK 196 (567)
T ss_pred EECeEEeecCCCCcc---------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHh-ccCCccEEEEeC
Confidence 699999999997653 268899999999999542 223222222222 2233333 345678777632
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+..+.+.++++.|+.++|.+..| ..+++.++++++.|+++|++|++|++..... +
T Consensus 197 g---~~~~~~~L~e~i~aGa~gfK~h~~y-------~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~--g---------- 254 (567)
T TIGR01792 197 G---SGSGPAALIEQIEAGACGLKVHEDW-------GATPAAIDNALSVADEYDVQVAVHTDTLNES--G---------- 254 (567)
T ss_pred C---ccchHHHHHHHHHcCCcEEEeCCCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCCcccc--h----------
Confidence 1 1223556777778899999987543 4689999999999999999999999543320 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC---hHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~---~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
-++..++... +.++|..|... . ..-++|+.+...++ +-++++|..-|.-
T Consensus 255 -----------------~ve~t~~a~g---------~rpIh~~H~~G~g~g-hapdi~~~~~~~~~-~~~st~pt~p~~~ 306 (567)
T TIGR01792 255 -----------------FVEDTIAAFK---------GRTIHTYHTEGAGGG-HAPDIIVVVGYNNI-LPSSTNPTLPYTV 306 (567)
T ss_pred -----------------HHHHHHHHHC---------CCcchhHhhcCCCCC-cHHHHHHHcCCCCc-ccCCCCCCCCCcc
Confidence 0222222221 66778888653 2 35567776654443 3344555432211
Q ss_pred ccccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 232 AEEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 232 ~~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
. -+.+ +.-.. ...|. +|.. ...+.| .+.|++.+++||..+... ....
T Consensus 307 ~-~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l---~d~G~~~~~~sDs~~mgr------------~~~~ 370 (567)
T TIGR01792 307 N-TIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKETIAAEDVL---QDMGAISMISSDSQAMGR------------IGEV 370 (567)
T ss_pred C-chhhhcCeEEEeccCCCCCcccchhhhhhccceeccccchh---hhCCcEEEecCCchhhCc------------ccce
Confidence 0 0000 00000 00111 1111 001122 234999999999642210 0000
Q ss_pred CchhhhHHHHHHHHHHhc-------------CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCC
Q 015182 295 ISSLQFVLPVTWSYGRKY-------------GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN 360 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-------------~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~ 360 (411)
+..+. .......... .++.+ |+++|.|||+++|+ +++|+|++||.|||||||++. +.
T Consensus 371 ~~r~~---q~a~k~~~~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~-f~--- 441 (567)
T TIGR01792 371 VTRCW---QTADKMKKQRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAF-FG--- 441 (567)
T ss_pred eechH---HHHHHHHHhcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcc-cC---
Confidence 11110 0000011111 12222 99999999999999 779999999999999999762 11
Q ss_pred CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
.++..|+++|+++|.. |+..
T Consensus 442 --------------------~~p~~v~~~G~i~~~~~Gd~~ 462 (567)
T TIGR01792 442 --------------------VKPDMVLKGGLIAWAIMGDPN 462 (567)
T ss_pred --------------------CChheEEECCEEEEEeCCCcc
Confidence 2357899999999976 5544
No 71
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.91 E-value=5.8e-23 Score=200.78 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++ ++++|+++.+|+.+.. .......+. ..+| ++...+.++
T Consensus 212 ~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~-------------G~~~-----------v~~l~~~g~---- 262 (455)
T TIGR02022 212 AVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWS-------------GRRP-----------VEWLLDHGP---- 262 (455)
T ss_pred cCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHh-------------CCCH-----------HHHHHHcCC----
Confidence 568999999999 8899999999996532 211111111 1111 122222221
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... .+ +.++.+++.|+ .+.+||..... .+ .-.+| +.++++.|+.+++
T Consensus 263 l~~~~~~~H~~~l-~~-~d~~~la~~g~--~v~~~P~sn~~-------lg---~g~~p---------i~~l~~~Gv~v~l 319 (455)
T TIGR02022 263 VDARWCLVHATHL-TD-EETALLARSGA--VAGLCPTTEAN-------LG---DGIFP---------AVDFVAAGGRFGI 319 (455)
T ss_pred CCCCEEEEEeecC-CH-HHHHHHHHcCC--eEEEChhhhcc-------cc---CCCCC---------HHHHHHCCCeEEE
Confidence 2567777887754 22 34555556675 45578864211 01 11233 2345778999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhHhHHHHhCCCCCCcc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAI 339 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~l~~~~al~~~T~n~A~~lg~~~~G~I 339 (411)
|||..+... .|. +.++...++... ...++.+++++++|.|+|+++|++ .|+|
T Consensus 320 GTD~~~~~d--------~~~---------~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~~-~GsL 381 (455)
T TIGR02022 320 GSDSHVVID--------VAE---------ELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGLA-TGGL 381 (455)
T ss_pred ECCCCCCCC--------HHH---------HHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCCC-CCcc
Confidence 999633211 110 112211111111 124678899999999999999994 8999
Q ss_pred cccCCccEEEEcCCCeeEeCC--CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 340 AIGNHADLVVWEPEAEFELDN--DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 340 ~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++||.|||||+|.+.+...+. + ++.. ..+|.+. ...|..|||+||+||++|+++.
T Consensus 382 e~Gk~ADlvvld~~~~~~~~~~~~-~~~~----~lv~~~~--~~~V~~v~V~G~~v~~~g~~~~ 438 (455)
T TIGR02022 382 RAGARADFLTLDGDHPYLAGALGD-SLLD----RWLFAGG--GAAVRDVWVGGRWVVRDGRHAL 438 (455)
T ss_pred CCCCCcCEEEEeCCCcccCCCCch-hHHH----HHhhcCC--CCCccEEEECCEEEEECCcccc
Confidence 999999999999886544332 1 1111 1122221 3479999999999999999974
No 72
>PRK09228 guanine deaminase; Provisional
Probab=99.91 E-value=6.2e-23 Score=199.33 Aligned_cols=216 Identities=17% Similarity=0.092 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++.+.|+++ |+++++|+.+.......+.+ .+..+|. .++...+.|+
T Consensus 207 t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~------------~~g~~~~---------~~~~l~~~G~---- 261 (433)
T PRK09228 207 TSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKE------------LFPEARD---------YLDVYERYGL---- 261 (433)
T ss_pred cCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHH------------HcCCCCC---------HHHHHHHcCC----
Confidence 56789999999999998 99999999764321111110 0011110 1222233322
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ .+.+||..-+. .+. ..+| +.++++.|+.+++
T Consensus 262 l~~~~~~~H~~~l--~~~~~~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 318 (433)
T PRK09228 262 LGPRAVFAHCIHL--EDRERRRLAETGA--AIAFCPTSNLF-------LGS---GLFD---------LKRADAAGVRVGL 318 (433)
T ss_pred CCCCeEEEeccCC--CHHHHHHHHHcCC--eEEECCccHHh-------hcC---CCcC---------HHHHHHCCCeEEE
Confidence 2567888898865 3344566666675 44567753211 010 1122 3345677999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 348 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlv 348 (411)
|||....+. . ++| .+.++...++.....+++++++++++|.|||+++|+ +++|+|++||.||||
T Consensus 319 GtD~~~~~~-~-----d~~---------~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlv 383 (433)
T PRK09228 319 GTDVGGGTS-F-----SML---------QTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFV 383 (433)
T ss_pred ecCCCCCCC-C-----CHH---------HHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEE
Confidence 999632111 0 011 011221112222235689999999999999999999 468999999999999
Q ss_pred EEcCCCeeEeCC--------CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 349 VWEPEAEFELDN--------DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 349 v~d~~~~~~~~~--------~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++|.+..+...+ . +... .-.|.+ ....|..|||+||+|+++
T Consensus 384 v~d~~~~~~~~~~~~~~~~~~-d~~~----~lv~~~--~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 384 VLDPAATPLLALRTARAESLE-ELLF----ALMTLG--DDRAVAETYVAGRPVYRR 432 (433)
T ss_pred EEcCCCCccccchhcccCCHH-HHHH----HHhhcC--CccceeEEEECCEEeccC
Confidence 999875432211 0 0000 112222 145799999999999875
No 73
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.91 E-value=4.3e-23 Score=199.59 Aligned_cols=193 Identities=17% Similarity=0.085 Sum_probs=117.5
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~ 173 (411)
.+++.+.+.. ...+++++|+++++.|+++ |+++++|+.+.. ........ ...+|.
T Consensus 170 ~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~-------------~~~~~~------- 226 (401)
T TIGR02967 170 RLLYAVTPRF---APTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL-------------FPEAKD------- 226 (401)
T ss_pred CceEEEECCc---CCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH-------------cCCCCc-------
Confidence 4666665532 2357889999999999999 999999997543 22211111 011111
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
.++...+.++ .+.+..+.|+... +.+.++.+++.|+.+ .+||...+.. + ...+|
T Consensus 227 --~~~~l~~~g~----lg~~~~~~H~~~~--~~~~~~~l~~~g~~v--~~~P~~~~~~-------~---~g~~~------ 280 (401)
T TIGR02967 227 --YLDVYDHYGL----LGRRSVFAHCIHL--SDEECQRLAETGAAI--AHCPTSNLFL-------G---SGLFN------ 280 (401)
T ss_pred --HHHHHHHCCC----CCCCeEEEecccC--CHHHHHHHHHcCCeE--EEChHHHHHh-------c---cCCCC------
Confidence 1222233322 2567778888865 234566666777644 4677532110 1 01122
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
+.++++.|+.+++|||....... +.| .+.+....+......+++++++++++|.|||+++|+
T Consensus 281 ---~~~~~~~Gv~v~lGtD~~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~ 342 (401)
T TIGR02967 281 ---LKKALEHGVRVGLGTDVGGGTSF------SML---------QTLREAYKVSQLQGARLSPFEAFYLATLGGARALDL 342 (401)
T ss_pred ---HHHHHHCCCeEEEecCCCCCCCc------CHH---------HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCC
Confidence 23446779999999996321110 001 011111111112234699999999999999999999
Q ss_pred -CCCCcccccCCccEEEEcCCCe
Q 015182 334 -VSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 334 -~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
+++|+|++||.|||+++|.+.+
T Consensus 343 ~~~~G~i~~G~~ADlvi~d~~~~ 365 (401)
T TIGR02967 343 DDRIGNFEPGKEADFVVLDPAAT 365 (401)
T ss_pred cCCccccCCCCccCEEEEcCCCC
Confidence 4689999999999999998864
No 74
>PRK05985 cytosine deaminase; Provisional
Probab=99.91 E-value=1.7e-22 Score=194.59 Aligned_cols=280 Identities=15% Similarity=0.068 Sum_probs=155.5
Q ss_pred HHHHHHcCCceeEecCCCCCCCC--CCCHHHHHHHHHHHhcCCceEEEEEeeecC-CCccchHHHHHHHHCCceEEEEec
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLKSFM 101 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~ 101 (411)
..+.++++|+|+++|+. +..+. ...++.+.+..+..+....+++........ ........+++.++.|+..+.. +
T Consensus 103 ~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg-~ 180 (391)
T PRK05985 103 LARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGG-L 180 (391)
T ss_pred HHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeC-C
Confidence 35678899999999986 32222 222334433333333333333322111000 1111223466667777653322 2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHh
Q 015182 102 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 181 (411)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~ 181 (411)
.+. .....+++++.++++.|+++|+++.+|+.+..... ...+.++++.+.
T Consensus 181 ~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~---------------------------~~~~~~~~e~~~ 230 (391)
T PRK05985 181 DPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELG---------------------------AFQLERIAARTR 230 (391)
T ss_pred CCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCcc---------------------------HHHHHHHHHHHH
Confidence 222 12245679999999999999999999987643210 012334444444
Q ss_pred hhccCCCCCCceEEEEcCCCh----HHH-HHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHH
Q 015182 182 DTRTDGPAEGAHLHIVHLSDA----SSS-LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 256 (411)
Q Consensus 182 ~~~~~~~~~~~~~~i~h~~~~----~~~-~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~ 256 (411)
+.+. ..++.+.|+... ++. .++++.+++.|+.++. ++.. + ...+ .
T Consensus 231 ~~g~-----~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~--~~~~-----------~---~~~~---------~ 280 (391)
T PRK05985 231 ALGM-----QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT--NAPG-----------S---VPVP---------P 280 (391)
T ss_pred HhCC-----CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE--eCCC-----------C---CCCC---------C
Confidence 4411 236788887632 011 2567777788876542 2210 0 0012 2
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHHhCCCC
Q 015182 257 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQVS 335 (411)
Q Consensus 257 l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~lg~~~ 335 (411)
+.++++.|+.+++|||+...+. +||. ....++. +..... ......-+++++++++|.|||+++|++.
T Consensus 281 ~~~l~~~Gv~v~lGtD~~~~~~-------~p~~----~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~ 348 (391)
T PRK05985 281 VAALRAAGVTVFGGNDGIRDTW-------WPYG----NGDMLER-AMLIGYRSGFRTDDELAAALDCVTHGGARALGLED 348 (391)
T ss_pred HHHHHHCCCeEEEecCCCCCCC-------cCCC----CCcHHHH-HHHHHHHHccCChHHHHHHHHHHcchhHHHhCCcc
Confidence 3345677999999999642110 1121 1111211 111110 0001123467999999999999999954
Q ss_pred CCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 336 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
++|++||.||||+||.+.+..... . ...+..|+++|++||++|
T Consensus 349 -~~l~~G~~ADlvvld~~~~~~~~~----------~--------~~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 349 -YGLAVGARADFVLVDAETVAEAVV----------A--------VPVRRLVVRGGRIVARDG 391 (391)
T ss_pred -cCCCCCCcCCEEEECCCCHHHHHh----------h--------CCcceEEEECCEEEecCC
Confidence 469999999999999875321110 0 113567999999999886
No 75
>PLN02303 urease
Probab=99.91 E-value=3.6e-23 Score=205.22 Aligned_cols=296 Identities=22% Similarity=0.281 Sum_probs=166.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCC--CHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTI--STETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+||+||+|+|+..|+.. +.++++||||+++++. ++.+... ....++.+.+..+ ...+++.++..
T Consensus 397 tPG~ID~HVHf~~Pg~~---------~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gk 466 (837)
T PLN02303 397 TAGGIDCHVHFICPQLA---------TEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGK 466 (837)
T ss_pred EeCEEEeecCCCCCcHH---------HHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEcc
Confidence 69999999999877532 4455555555555431 2333332 4567777766433 45688888753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. +...++++.++.+.|+.+||.+..+ ..+++.+++++++|+++|+++++|+++... .++
T Consensus 467 G---~~s~l~eL~elieaGa~GfK~h~d~-------gvTpelL~raLe~AkelGVpVaIHAEdLnE--~G~--------- 525 (837)
T PLN02303 467 G---NTAKPEGLHEIIKAGAMGLKLHEDW-------GTTPAAIDNCLDVAEEYDIQVTIHTDTLNE--SGC--------- 525 (837)
T ss_pred C---cccCHHHHHHHHHcCcEEEEECCCC-------CCCHHHHHHHHHHHHHcCCEEEEecCcccc--cch---------
Confidence 2 2234667888888899999986432 357899999999999999999999887322 000
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC---ChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---DASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~---~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
++..++... +.++|..|-. -. ..-++|+.+...++ +-++++|..-|.-
T Consensus 526 ------------------vE~t~~a~G---------~RpIh~~h~~Ga~gg-hapdi~~~~~~~nv-lpsstnpt~p~t~ 576 (837)
T PLN02303 526 ------------------VEHSIAAFK---------GRTIHTYHSEGAGGG-HAPDIIKVCGVKNV-LPSSTNPTRPYTK 576 (837)
T ss_pred ------------------HHHHHHHHC---------CChHHHHHhcCCCCC-CCcHHHHhcCCCCc-cCCCCCCCCCCcc
Confidence 111111111 2233333321 11 23466666544333 2234455322210
Q ss_pred ccccCC-CCcceE---EcCC-----------CCChhhHHHHHHHH-hcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 232 AEEIPD-GDTRFK---CAPP-----------IRDAANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 232 ~~~~~~-~~~~~~---~~p~-----------lr~~~~~~~l~~~l-~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
. -+.+ +.-... ..|. +|... .+.-+.| +.|.+..++||...... ....+
T Consensus 577 n-t~~e~~dm~m~~h~l~~~~~edvafa~srir~~t--iaaed~l~d~G~~s~~~SDs~amgr------------~ge~i 641 (837)
T PLN02303 577 N-TIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAET--IAAEDILHDMGAISIISSDSQAMGR------------IGEVI 641 (837)
T ss_pred C-chhhhcCeEEeecCCCCCCcchhhhhhhhccchh--hccchhhhccCCEEEEeccchhhCc------------cccee
Confidence 0 0000 000000 0111 11110 0111122 34999999999642210 00001
Q ss_pred chhhhHHHHHHHHHH---------hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcc
Q 015182 296 SSLQFVLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 365 (411)
Q Consensus 296 ~~~~~~~~~~~~~~~---------~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~ 365 (411)
..+...-..+ ...+ .-.++++++|+++|+|||+++|+ +++|+|++||.||||||+++. +
T Consensus 642 ~r~~q~A~k~-~~~~g~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~---------f- 710 (837)
T PLN02303 642 TRTWQTAHKM-KSQRGALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAF---------F- 710 (837)
T ss_pred eehHHHHHHH-HHhcCCCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccc---------c-
Confidence 1110000000 0000 01256899999999999999999 779999999999999999641 1
Q ss_pred cCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 366 MKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 366 ~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..+|.+||++|++||..
T Consensus 711 --------------g~~~~~vi~~G~ivy~~ 727 (837)
T PLN02303 711 --------------GAKPEMVIKGGQIAWAQ 727 (837)
T ss_pred --------------CCCeeEEEECCEEEEcc
Confidence 12588999999999986
No 76
>PRK07213 chlorohydrolase; Provisional
Probab=99.91 E-value=2.7e-22 Score=191.62 Aligned_cols=198 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh-hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH-VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..++.++++++++.|+++|+++++|+.+....... .... ...| ++ .+.+.|+
T Consensus 174 ~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~-------------G~~~-------v~----~~~~~G~--- 226 (375)
T PRK07213 174 NEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKY-------------GMTE-------IE----RLINLGF--- 226 (375)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHc-------------CCCh-------HH----HHHhcCC---
Confidence 35688999999999999999999999765421111 1110 1111 22 2222221
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
..+ .+.|+... +.+.++.++++|+.+ .+||..-..- +. -.+ .+.++++.|+.++
T Consensus 227 --~~~-~i~H~~~~--~~~~i~~la~~g~~v--~~~P~sn~~l-------~~---g~~---------~v~~l~~~Gv~v~ 280 (375)
T PRK07213 227 --KPD-FIVHATHP--SNDDLELLKENNIPV--VVCPRANASF-------NV---GLP---------PLNEMLEKGILLG 280 (375)
T ss_pred --CCC-EEEECCCC--CHHHHHHHHHcCCcE--EECCcchhhh-------cc---CCc---------cHHHHHHCCCEEE
Confidence 122 36787765 224466667777644 4677531110 00 112 2345677899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEE
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 348 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlv 348 (411)
+|||..+.+.. . .+..+.......+++++++++++|.|+|+++|+++.|+|++||.|||+
T Consensus 281 lGTD~~~~~~~-~-------------------~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlv 340 (375)
T PRK07213 281 IGTDNFMANSP-S-------------------IFREMEFIYKLYHIEPKEILKMATINGAKILGLINVGLIEEGFKADFT 340 (375)
T ss_pred EeeCCCCCchH-h-------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCCcCCcCCCCcccEE
Confidence 99997433210 0 011111112334799999999999999999999658999999999999
Q ss_pred EEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEE
Q 015182 349 VWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNL 392 (411)
Q Consensus 349 v~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~ 392 (411)
++|.+.+. |. ++|+..... ...|..|||+||+
T Consensus 341 v~d~~~~~--p~----------~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 341 FIKPTNIK--FS----------KNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred EEcCcccc--cc----------CCchHHHhhhccCCCceEEEECCcC
Confidence 99976322 21 233332222 3479999999984
No 77
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.90 E-value=1.8e-21 Score=187.00 Aligned_cols=87 Identities=21% Similarity=0.390 Sum_probs=71.5
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 312 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
..+|++++++++|.|||++||++++|+|++|++|||+|+|++.+ .+..+ ++.+ . ....++|.+||++|+
T Consensus 425 reLSLeei~~mtT~nPAKiLGL~~kG~L~~G~~ADLvIfD~n~~-~v~~~-dl~s------~---~~~~gkV~~Tiv~Gk 493 (541)
T cd01304 425 REYSLYEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPD-QVDPS-DYEK------V---EKAFSRAAYVLKDGE 493 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCcCCEEEEeCCcC-ccCch-hhcC------c---eeecCcEEEEEECCE
Confidence 45799999999999999999996689999999999999998865 44444 3321 1 235678999999999
Q ss_pred EEEEcCcccCCCCCcccc
Q 015182 392 LVYKEGNHAPAACGSPIL 409 (411)
Q Consensus 392 ~v~~~g~~~~~~~g~~~~ 409 (411)
+|+++|+++..+.|+.+-
T Consensus 494 vVv~dGeiv~~~~G~~l~ 511 (541)
T cd01304 494 IVVKDGEVVAEPWGRTYW 511 (541)
T ss_pred EEEECCEEccCCCCcEEE
Confidence 999999998777787653
No 78
>PRK09356 imidazolonepropionase; Validated
Probab=99.90 E-value=4.9e-22 Score=192.69 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=125.2
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++..++.+... ..+++++++++++.|+++|+++.+|+.+..... .
T Consensus 206 ~~~~i~~~~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~-----------------------------~ 250 (406)
T PRK09356 206 LADAVDVFCET------GAFSVEQSERVLEAAKALGLPVKIHAEQLSNLG-----------------------------G 250 (406)
T ss_pred CcceEEEEecC------CCCCHHHHHHHHHHHHHCCCCEEEEEecccCCC-----------------------------H
Confidence 46667664321 246789999999999999999999997532100 0
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+.... +. + ...+.|+... +.+.++++++.|+ .+.+||...+.. +. ...+
T Consensus 251 ~~~~~----~~-------~-~~~~~H~~~~--~~~~~~~la~~g~--~~~~~P~~~~~l-------~~--~~~~------ 299 (406)
T PRK09356 251 AELAA----EY-------G-ALSADHLEYL--DEAGIAAMAEAGT--VAVLLPGAFYFL-------RE--TQYP------ 299 (406)
T ss_pred HHHHH----Hc-------C-CcEehHhhcC--CHHHHHHHHHhCC--EEEECccchhhc-------Cc--ccCc------
Confidence 11111 11 1 2335676654 2234555566675 455778543210 00 0011
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHh
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~l 331 (411)
.+.+++++|+++++|||+.|... ++ ..+...+.. ....+++++++++++|.|||+++
T Consensus 300 ---~~~~l~~~Gi~v~lgtD~~~~~~--------~~-----------~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~ 357 (406)
T PRK09356 300 ---PARLLRDAGVPVALATDFNPGSS--------PT-----------ESLLLAMNMACTLFRLTPEEALAAVTINAARAL 357 (406)
T ss_pred ---hHHHHHHCCCeEEEeCCCCCCCC--------hh-----------HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHh
Confidence 23344677999999999754211 11 011222222 23568999999999999999999
Q ss_pred CC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 332 GQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 332 g~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
|+ +++|+|++||.|||+|+|.+.+..+ ++.. ...+|..||++|++||.
T Consensus 358 g~~~~~G~i~~G~~AD~vvld~~~~~~~--------------~~~~--~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 358 GRQDTHGSLEVGKKADLVIWDAPSPAEL--------------PYHF--GVNPVETVVKNGEVVVD 406 (406)
T ss_pred CCCCCceeeCCCCcCCEEEECCCchhhh--------------hhhh--CCCCccEEEECCEEeeC
Confidence 99 6689999999999999998743111 1110 13479999999999984
No 79
>PRK07572 cytosine deaminase; Validated
Probab=99.90 E-value=4.1e-22 Score=193.63 Aligned_cols=310 Identities=18% Similarity=0.177 Sum_probs=170.0
Q ss_pred CCceeecccccCCC---CC----------------------CccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCH
Q 015182 1 MPGLIDVHAHLDDP---GR----------------------TEWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTIST 51 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~----------------------~~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~ 51 (411)
+|||||+|+|+... +. .+.+++ ...++.+++.|||+++|+.....+.....
T Consensus 50 ~PG~id~h~h~~~~~~~~~~~~~~~g~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~ 129 (426)
T PRK07572 50 SPPFVDPHFHMDATLSYGLPRVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAV 129 (426)
T ss_pred cccceehhhCcchhhccCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHH
Confidence 69999999999532 11 111222 34566778999999999851112221222
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecC----CCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVP----ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 127 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 127 (411)
+.+.+..... ...+++.... +.. ...+..+.++++++.|++.+....... .....+.++++.+++.|+++
T Consensus 130 ~a~~~~~~~~--~~~~~~~~~a-~~~~g~~~~~~~~~~~~~~l~~g~d~iGg~p~~~---~~~~~~~e~l~~~~~~A~~~ 203 (426)
T PRK07572 130 EALLEVRERV--APYLDLQLVA-FPQDGVLRSPGAVDNLERALDMGVDVVGGIPHFE---RTMADGAESVRLLCEIAAER 203 (426)
T ss_pred HHHHHHHHHh--hccceEEEEe-ccChhhccCccHHHHHHHHHHcCCCEEeCCCCCc---cccchHHHHHHHHHHHHHHc
Confidence 2222222211 2334433321 111 111234567777778876653211100 00112248999999999999
Q ss_pred CCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh----
Q 015182 128 KRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---- 202 (411)
Q Consensus 128 g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~---- 202 (411)
|+++.+|+.+. ..... +++...+...+.|+ ..++.+.|+...
T Consensus 204 g~~v~~H~~e~~~~~~~----------------------------~~~~~~~~~~~~G~-----~~~v~~~H~~~l~~~~ 250 (426)
T PRK07572 204 GLRVDMHCDESDDPLSR----------------------------HIETLAAETQRLGL-----QGRVAGSHLTSMHSMD 250 (426)
T ss_pred CCCeEEEECCCCChhHH----------------------------HHHHHHHHHHHhCC-----CCCEEEEccchhhcCC
Confidence 99999999643 22111 12223333334332 226778888542
Q ss_pred -HHHHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 203 -SSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 203 -~~~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
....+.++.++++|+.++ .||.. +++... ....|.-+. ...+.++++.|+.+++|||+..
T Consensus 251 ~~~~~~~~~~la~~g~~vv--~~P~~n~~l~~~--------~~~~~~~~g---~~~v~~l~~~GV~v~lGtD~~~----- 312 (426)
T PRK07572 251 NYYVSKLIPLMAEAGVNAI--ANPLINITLQGR--------HDTYPKRRG---MTRVPELMAAGINVAFGHDCVM----- 312 (426)
T ss_pred HHHHHHHHHHHHHcCCeEE--ECchhhhhhcCC--------CCCCCCCCC---CcCHHHHHHCCCcEEEecCCCC-----
Confidence 023456777888887554 56642 221100 000111111 1234556778999999999631
Q ss_pred hhcccCCccccCCCC-chhhhHHHHHHHHHHhcCC----CHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCe
Q 015182 281 KLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGV----TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 281 k~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l----~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
++| .+.+. ..++... .. ....++ .+.++++++|.|||++||+++.| |++||.||||++|...+
T Consensus 313 -----~~~--~~~~~~~~~e~~~-~~---~~~~~~~~~~~l~~~l~~aT~~~A~~lgl~~~g-i~~G~~ADlvl~d~~~p 380 (426)
T PRK07572 313 -----DPW--YSLGSGDMLEVAH-MG---LHVAQMTGQDAMRACFDAVTVNPARIMGLEGYG-LEPGCNADLVLLQARDP 380 (426)
T ss_pred -----CCC--CCCCCCCHHHHHH-HH---HHHHcCCCHHHHHHHHHHhhcchHHhhCCCCcC-CCCCCcCCEEEEeCCCH
Confidence 112 11111 1122111 11 111223 35677789999999999995567 99999999999995323
Q ss_pred eEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
.. ......++..||++|++|++..
T Consensus 381 ~e------------------~i~~~~~~~~V~~~G~~v~~~~ 404 (426)
T PRK07572 381 IE------------------AIRLRAARLAVIRRGKVIARTP 404 (426)
T ss_pred HH------------------HHHhcCCceEEEECCEEEeccC
Confidence 21 1112346889999999999874
No 80
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.90 E-value=6.8e-22 Score=186.52 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=160.6
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHH-HHHhc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+..++.++.+ +++++++++||||++|++ ++.+ ...+.+.... +.+.. .+++++++++...+
T Consensus 33 ~PG~iD~H~H~~~~g~~~~~---~~~~~a~~~GvTtvvd~~-~~~~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~ 106 (338)
T cd01307 33 SPGWIDLHVHVYQGGTRYGD---RPDMIGVKSGVTTVVDAG-SAGA--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQ 106 (338)
T ss_pred ecCeEEeeecCCCCCcccCC---CHhHHHHcCceeEEEeCC-CCCC--CCHHHHHHHHHHhhhceEEEEEeeeccccccc
Confidence 69999999999998866554 378899999999999999 5544 4555544433 33433 35667776654433
Q ss_pred CCcc-----chHHHHHHH---HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 ENAY-----NASALEALL---NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~~~-----~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
.... ..+.+.++. ..|+.++|.++........ ....+++.++.+++.|+++.+|+.+....
T Consensus 107 ~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~---~~~~l~~~~~~a~~~~~pi~vH~~~~~~~-------- 175 (338)
T cd01307 107 DELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEW---GIKPLELAKKIAKEADLPLMVHIGSPPPI-------- 175 (338)
T ss_pred cccCChhHCCHHHHHHHHHHCcCcEEEEEEEeeccccccc---CCcHHHHHHHHHHHcCCCEEEEeCCCCCC--------
Confidence 2111 122333332 3689999999875432111 22348899999999999999999864320
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH----------HHHHHHHhHCCCCE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS----------LDLLMEAKTNGDSI 219 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~----------~~~i~~~~~~g~~i 219 (411)
+..++.+... + ..+.|+... .. .+.++.+.++|..
T Consensus 176 -----------------------~~~~~~~l~~--------g--~~~~H~~~g-~~~~~~~~~~~~~~~~~~~~~~G~~- 220 (338)
T cd01307 176 -----------------------LDEVVPLLRR--------G--DVLTHCFNG-KPNGIVDEEGEVLPLVRRARERGVI- 220 (338)
T ss_pred -----------------------HHHHHHHhcC--------C--CEEEeccCC-CCCCCCCCCCcHHHHHHHHHhCCEE-
Confidence 2222322221 2 124454432 11 2455666666653
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
.+++-. . ... ......+++++|. +..++||..+... + .+ +
T Consensus 221 -~d~~~G-------------~-~~~--------~~~~~~~l~~~G~~~~~lstD~~~~~~---------~----~~-p-- 261 (338)
T cd01307 221 -FDVGHG-------------T-ASF--------SFRVARAAIAAGLLPDTISSDIHGRNR---------T----NG-P-- 261 (338)
T ss_pred -EEeCCC-------------C-Cch--------hHHHHHHHHHCCCCCeeecCCccccCC---------C----CC-c--
Confidence 322210 0 000 0122334566786 4678999632110 0 00 1
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
...+...+......+++++++++++|.|||++|+++++|+|++|+.|||+|++.+.
T Consensus 262 ~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~ad~~v~~~~~ 317 (338)
T cd01307 262 VYALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKD 317 (338)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCcCCEEEEeCCC
Confidence 11223333334456899999999999999999999668999999999999999663
No 81
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.90 E-value=6.9e-22 Score=191.44 Aligned_cols=282 Identities=16% Similarity=0.133 Sum_probs=152.1
Q ss_pred HHHHHHcCCceeEecCCCCCCCC--CCCHHHHHHHHHHHhcCCceEEEEEeeecCC----CccchHHHHHHHHCCceEEE
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPE----NAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ik 98 (411)
....+++.||||++++. +..+. ....+.+.+..+.... .+.+... .+.+. ..+..+.+++..+.|+..++
T Consensus 101 ~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 176 (398)
T cd01293 101 ALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWAD--LIDLQIV-AFPQHGLLSTPGGEELMREALKMGADVVG 176 (398)
T ss_pred HHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhc--cceEEEE-eccCccccCCCCHHHHHHHHHHhCCCEEe
Confidence 45667899999999876 22221 0112223222222211 2222211 11111 11222334455555654333
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHH
Q 015182 99 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178 (411)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~ 178 (411)
.+ .+. +...+++++++++++.|+++|+++.+|+.+...... ..+.+.++
T Consensus 177 ~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~---------------------------~~~~~~~~ 225 (398)
T cd01293 177 GI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGS---------------------------RTLEELAE 225 (398)
T ss_pred CC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcch---------------------------hHHHHHHH
Confidence 22 221 113467899999999999999999999976432100 11233344
Q ss_pred HHhhhccCCCCCCceEEEEcCCChH-----HHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 179 VAKDTRTDGPAEGAHLHIVHLSDAS-----SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~h~~~~~-----~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
.+.+.++ ..++.+.|+.... +..+.++.++++|+.++ .||...+..... . ...|... .
T Consensus 226 ~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~--~~p~s~~~l~~~-~------~~~~~~~---~ 288 (398)
T cd01293 226 EAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVV--SLPPINLYLQGR-E------DTTPKRR---G 288 (398)
T ss_pred HHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEE--eCCCcchhhccc-c------cCCCCCC---C
Confidence 4444421 2356788876430 12366888888887544 566432111000 0 0001111 1
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC-chhhhHHHHHHHHHHhcCC----CHHHHHHHHhHhHH
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGV----TLEQLASWWSERPA 328 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l----~~~~al~~~T~n~A 328 (411)
...+.++++.|+.+++|||.... ++ .+.+. ..++ .+.. .....++ +.+++|+++|.|+|
T Consensus 289 ~~~~~~~~~~Gv~v~lGTD~~~~----------~~--~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~al~~aT~~~A 352 (398)
T cd01293 289 VTPVKELRAAGVNVALGSDNVRD----------PW--YPFGSGDMLE-VANL---AAHIAQLGTPEDLALALDLITGNAA 352 (398)
T ss_pred CCcHHHHHHCCCeEEECCCCCCC----------CC--cCCCCCCHHH-HHHH---HHHHHcCCChhhHHHHHHhcChhhh
Confidence 23445667789999999996321 11 01111 1111 1111 1112233 44889999999999
Q ss_pred HHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 329 ~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
+++|+ +.|+|++||.||||++|.+++..+ .. ...++..||++|+++
T Consensus 353 ~~lg~-~~G~l~~Gk~ADlv~~d~~~~~~~------~~------------~~~~~~~v~~~G~~~ 398 (398)
T cd01293 353 RALGL-EDYGIKVGCPADLVLLDAEDVAEA------VA------------RQPPRRVVIRKGRVV 398 (398)
T ss_pred hhcCC-cCcccccCCcceEEEECCCCHHHH------Hh------------cCCCccEEEECCEEC
Confidence 99999 689999999999999998853211 10 013688999999874
No 82
>PRK09230 cytosine deaminase; Provisional
Probab=99.90 E-value=2.4e-21 Score=187.53 Aligned_cols=311 Identities=19% Similarity=0.230 Sum_probs=169.8
Q ss_pred CCceeecccccCCC---CCC----------------------ccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCH
Q 015182 1 MPGLIDVHAHLDDP---GRT----------------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTIST 51 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~----------------------~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~ 51 (411)
+|||||+|+|+... +.. +.+++ ....+.+++.|||+++++.+...+....+
T Consensus 54 ~PGlid~H~H~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~ 133 (426)
T PRK09230 54 IPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTAL 133 (426)
T ss_pred ccceeEEEEccccceecCCCccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHH
Confidence 79999999999743 110 11122 23455678999999999872111211112
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecC---CCccchHHHHHHHHCCceEEEEeccCCCCCCCC-CCCHHHHHHHHHHHHhC
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVP---ENAYNASALEALLNAGVLGLKSFMCPSGINDFP-MTNASHIKEGLSVLARY 127 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~-~~~~~~l~~~~~~a~~~ 127 (411)
+.+.+..+..+. ..+++...-... ........+.+..+.+...+.. . +. ..+. ..+.+.+..+++.|+++
T Consensus 134 ~a~~~~~~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~~~~vg~-~-p~--~~~~~~~~~e~l~~~~~~A~~~ 207 (426)
T PRK09230 134 KAMLEVKEEVAP--WVDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGA-I-PH--FEFTREYGVESLHKAFALAQKY 207 (426)
T ss_pred HHHHHHHHHhhC--cceEEEEeccCccccCCccHHHHHHHHHHcCCCEEeC-C-CC--ccccchhHHHHHHHHHHHHHHh
Confidence 233333333332 233332210000 0111223344444555432321 1 11 0111 12578999999999999
Q ss_pred CCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH---
Q 015182 128 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--- 204 (411)
Q Consensus 128 g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~--- 204 (411)
|+++.+|+.+...... ......+++..+.++ +.++.+.|+... .
T Consensus 208 g~~~~~H~~E~~~~~~---------------------------~~~~~~~~~~~~~gl-----~~~v~~~H~~~l-~~~~ 254 (426)
T PRK09230 208 DRLIDVHCDEIDDEQS---------------------------RFVETVAALAHREGM-----GARVTASHTTAM-HSYN 254 (426)
T ss_pred CCCcEEEECCCCCcch---------------------------HHHHHHHHHHHHhCC-----CCCEEEEecCch-hcCC
Confidence 9999999986432110 012234444444421 567778887654 2
Q ss_pred ---HHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 205 ---SLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 205 ---~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
..+.++.++++|+. +.+||.. +++.. .....|.-+.. ..+.++++.|+.+++|||+. .
T Consensus 255 ~~~~~~~~~~La~~gv~--vv~cP~sn~~l~~--------~~~~~p~~~g~---~pi~~l~~aGv~V~lGTD~~-~---- 316 (426)
T PRK09230 255 GAYTSRLFRLLKMSGIN--FVANPLVNIHLQG--------RFDTYPKRRGI---TRVKEMLEAGINVCFGHDDV-F---- 316 (426)
T ss_pred HHHHHHHHHHHHHcCCe--EEECcchhhhhcC--------CCCCCCCCCCC---cCHHHHHHCCCeEEEecCCC-C----
Confidence 45577778887864 4567864 22211 00011111111 22345677799999999963 1
Q ss_pred hhcccCCccccCCCCchhhhHHHHHHHHHHhcCC---CHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeE
Q 015182 281 KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV---TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 357 (411)
Q Consensus 281 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l---~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~ 357 (411)
++|. +.|...+...+.... .....+ ++.++++++|.|||++||+++.| |++||.||||+||.+.+..
T Consensus 317 -----d~~~--~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~l~maT~~gA~alg~~~~g-le~G~~ADlv~~~~~~~~~ 386 (426)
T PRK09230 317 -----DPWY--PLGTANMLQVLHMGL--HVCQLMGYGQINDGLNLITTHSARTLNLQDYG-IEVGNPANLIILPAENGFD 386 (426)
T ss_pred -----CCCc--CCCCCCHHHHHHHHH--HHHhhCChhhHHHHHHHHhcchhHHhCCCCcC-CCCCCcCCEEEEeCCCHHH
Confidence 2231 222211111111111 111122 36899999999999999995577 9999999999999754322
Q ss_pred eCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 358 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 358 ~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+ .. ....+..|+++|++|+..
T Consensus 387 ~------~~------------~~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 387 A------VR------------RQVPVRYSIRHGKVIAET 407 (426)
T ss_pred H------Hh------------ccCCceEEEECCEEEecc
Confidence 1 10 023578999999999966
No 83
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.90 E-value=1.1e-21 Score=190.12 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++.|++ |+++.+|+.+... ........ ..+| + +...+.+ .
T Consensus 203 ~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~-------------g~~~-------i----~~l~~~g----~ 253 (418)
T cd01313 203 AVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAH-------------GRRP-------V----ELLLDHG----H 253 (418)
T ss_pred CCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHc-------------CCCH-------H----HHHHHcC----C
Confidence 5789999999999999 9999999965321 11111000 1111 1 1222221 1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... .+ +.++.+++.|+ .+.+||...+.- +. ..+|+ .++++.|+.+++
T Consensus 254 l~~~~~~~H~~~l-~~-~~~~~la~~g~--~v~~~P~sn~~l-------g~---g~~p~---------~~l~~~Gv~v~l 310 (418)
T cd01313 254 LDARWCLVHATHL-TD-NETLLLGRSGA--VVGLCPTTEANL-------GD---GIFPA---------AALLAAGGRIGI 310 (418)
T ss_pred CCCCEEEEeCCCC-CH-HHHHHHHHcCC--EEEECCCchhhc-------cC---CCCCH---------HHHHHCCCcEEE
Confidence 3677888898865 32 44666667675 445788642210 11 12332 345777999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---------hcCCCHHHHHHHHhHhHHHHhCCCCCCccc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAIA 340 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~l~~~~al~~~T~n~A~~lg~~~~G~I~ 340 (411)
|||...... .|. +.+.....+... ...++++++++++|.|+|+++|++ +|+|+
T Consensus 311 GtD~~~~~d--------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~-~Gsle 372 (418)
T cd01313 311 GSDSNARID--------LLE---------ELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA-TGALE 372 (418)
T ss_pred ecCCCCCcC--------HHH---------HHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC-CCeEC
Confidence 999532110 110 111111111111 237999999999999999999997 99999
Q ss_pred ccCCccEEEEcCCCeeEeCCC-CCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 341 IGNHADLVVWEPEAEFELDND-HPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 341 ~G~~ADlvv~d~~~~~~~~~~-~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
+||.|||||+|.+.++..+.. ++... .-.|.+. ...|..|||+|+
T Consensus 373 ~Gk~ADlvvld~~~~~~~p~~~~~~~~----~lv~~~~--~~~V~~v~V~G~ 418 (418)
T cd01313 373 AGARADLLSLDLDHPSLAGALPDTLLD----AWVFAAG--DREVRDVVVGGR 418 (418)
T ss_pred CCCccCEEEEcCCCccccCCCchhHHH----HHeecCC--CCceeEEEeCCC
Confidence 999999999999877665531 02111 1122221 347999999996
No 84
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.89 E-value=6.4e-22 Score=188.77 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=128.0
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh-hccCcCCcccc-ccc-------cCCCCHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK-LEDDTLDTRSY-STY-------LKTRPPS 167 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-~~~~~~~~~~~-~~~-------~~~~p~~ 167 (411)
++..+.+.. ...++++.++++.+.|+++|+++++|+.+.......+. +.|. ...+ ... ...+|
T Consensus 148 v~~~~~p~a---~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~---~~~~~~~~~~~~~~~~g~~p-- 219 (381)
T cd01312 148 FIPAISPHA---PYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGW---FKHFWESFLKLPKPKKLATA-- 219 (381)
T ss_pred eEEEECCCC---CcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccc---hhhHhhhhcccccccCCCCH--
Confidence 556565542 23568899999999999999999999876533221111 1000 0000 000 01111
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCC
Q 015182 168 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 247 (411)
Q Consensus 168 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~ 247 (411)
++...+.++ .+.++.+.|+... . .+.++.+++.|+. +.+||..-.. .+. ..+|
T Consensus 220 ---------v~~l~~~g~----L~~~~~~~H~~~l-~-~~~~~~l~~~g~~--v~~~P~sn~~-------lg~---g~~p 272 (381)
T cd01312 220 ---------IDFLDMLGG----LGTRVSFVHCVYA-N-LEEAEILASRGAS--IALCPRSNRL-------LNG---GKLD 272 (381)
T ss_pred ---------HHHHHHcCC----CCCCcEEEECCcC-C-HHHHHHHHHcCCe--EEECcchhhh-------hcC---CCcC
Confidence 122233322 2567888998865 3 3455666677764 4567742110 010 1122
Q ss_pred CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh--cCCCHHHHHHHHhH
Q 015182 248 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQLASWWSE 325 (411)
Q Consensus 248 lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~l~~~~al~~~T~ 325 (411)
+.++++.|+.+++|||....+.. ...++ .+.......+. ..+++.++++++|.
T Consensus 273 ---------~~~~~~~Gv~v~lGtD~~~~~~~---------------~d~~~-~~~~~~~~~~~~~~~~~~~~~l~~aT~ 327 (381)
T cd01312 273 ---------VSELKKAGIPVSLGTDGLSSNIS---------------LSLLD-ELRALLDLHPEEDLLELASELLLMATL 327 (381)
T ss_pred ---------HHHHHHCCCcEEEeCCCCccCCC---------------CCHHH-HHHHHHHhcccccccCCHHHHHHHHHH
Confidence 33557789999999996432110 01011 11111111111 13688999999999
Q ss_pred hHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 326 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 326 n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
|+|++||++ .|+|++||.||||++|.+.+. .+. +.|+.-.-..+.|..|||+||
T Consensus 328 ~gA~alg~~-~Gsle~Gk~ADlvv~d~~~~~-~~~----------~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 328 GGARALGLN-NGEIEAGKRADFAVFELPGPG-IKE----------QAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred HHHHHhCCC-CCccCCCCcccEEEEeCCCcC-CCC----------ccHHHHHHccCCCCEEEecCC
Confidence 999999997 899999999999999987642 121 112111112457999999996
No 85
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.89 E-value=1.5e-21 Score=187.18 Aligned_cols=194 Identities=19% Similarity=0.134 Sum_probs=124.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.+++++... ...+.++++++++.|+++|+++.+|+.+.....
T Consensus 176 ~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~----------------------------- 220 (371)
T cd01296 176 NLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADELSNIG----------------------------- 220 (371)
T ss_pred CCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC-----------------------------
Confidence 567788875322 245689999999999999999999998643210
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+.... .. +. ..+.|+... +.+.++.+++.|+. ..+||...+.. +. ..+|
T Consensus 221 ~~~~~~----~~-------g~-~~i~H~~~~--~~~~i~~la~~g~~--v~~~P~~~~~l-------~~---~~~~---- 270 (371)
T cd01296 221 GAELAA----EL-------GA-LSADHLEHT--SDEGIAALAEAGTV--AVLLPGTAFSL-------RE---TYPP---- 270 (371)
T ss_pred HHHHHH----Hc-------CC-CeeHHhcCC--CHHHHHHHHHcCCe--EEEChHHHHHh-------CC---CCCC----
Confidence 111111 11 21 235676654 23566677777764 45677543221 10 0233
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~ 330 (411)
++++++.|+++++|||+.|.... ...+...+.. ....+++++++++++|.|||++
T Consensus 271 -----~~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~ 326 (371)
T cd01296 271 -----ARKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRMTPEEALTAATINAAAA 326 (371)
T ss_pred -----HHHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34557889999999997543210 0011222222 2356899999999999999999
Q ss_pred hCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 331 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 331 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+|+ +++|+|++||.|||||+|.+.+..+. +.. ....|..||++|
T Consensus 327 lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~--------------~~~--~~~~v~~v~~~G 371 (371)
T cd01296 327 LGLGETVGSLEVGKQADLVILDAPSYEHLA--------------YRF--GVNLVEYVIKNG 371 (371)
T ss_pred hCCCCCceeeCCCCCcCEEEECCCchHhhh--------------hhc--CCCCceEEEeCc
Confidence 999 57899999999999999988542221 110 023588999988
No 86
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.89 E-value=1.7e-21 Score=187.11 Aligned_cols=194 Identities=21% Similarity=0.179 Sum_probs=122.2
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++.+++++- +. ...+.+.++++++.|+++|+++.+|+.+..... .
T Consensus 181 ~v~~~~~~~-~~-----~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-----------------------------~ 225 (377)
T TIGR01224 181 LASFADVFC-EA-----GVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-----------------------------G 225 (377)
T ss_pred CCCeeEEEe-cC-----CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-----------------------------H
Confidence 366776542 11 245678999999999999999999997642110 1
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+..+.. . + +..+.|+... +.+.++.+++.|+ .+++||...+.. + ...+|
T Consensus 226 ~~~~~~----~-------g-~~~~~H~~~~--~~~~l~~la~~g~--~~~~~P~~~~~l-------~---~~~~p----- 274 (377)
T TIGR01224 226 AELAAK----L-------G-AVSADHLEHA--SDAGIKALAEAGT--VAVLLPGTTFYL-------R---ETYPP----- 274 (377)
T ss_pred HHHHHH----c-------C-CCccHHHhcC--CHHHHHHHHhcCC--EEEECchHHHhc-------C---CcCcc-----
Confidence 111111 1 1 1234566544 2345666667675 456788643211 1 01122
Q ss_pred hHHHHHHHHhcCCccEEcCCCCC-CChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHH
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p-~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+.++++.|+.+++|||+.| .+. + . .+...+. .....+++++++++++|.|||++
T Consensus 275 ----~~~l~~~Gv~v~lgTD~~~~~~~---------~---------~--~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 330 (377)
T TIGR01224 275 ----ARQLIDYGVPVALATDLNPGSSP---------T---------L--SMQLIMSLACRLMKMTPEEALHAATVNAAYA 330 (377)
T ss_pred ----HHHHHHCCCCEEEECCCCCCCCh---------h---------H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3345677999999999754 221 1 0 1111111 12356899999999999999999
Q ss_pred hCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 331 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 331 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+|+ +++|+|++||.|||||||.+.+..+ |+.. ...+|..||++||+
T Consensus 331 lg~~~~~G~l~~G~~ADlvv~d~~~~~~~--------------~~~~--~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 331 LGLGEERGTLEAGRDADLVILSAPSYAEI--------------PYHY--GVNHVHAVIKNGNI 377 (377)
T ss_pred hCCCCCceeeCCCCcCCEEEEcCCChHHh--------------hhhc--CCCCceEEEECCCC
Confidence 999 5589999999999999998854221 1111 12379999999984
No 87
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.89 E-value=5.4e-21 Score=185.86 Aligned_cols=209 Identities=15% Similarity=0.046 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHhCC-CcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 111 MTNASHIKEGLSVLARYK-RPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
.++++.++++++.|+++| +++++|+.+... .+......+ ...+ .++...+.|+
T Consensus 204 ~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g-----------~~~~-----------p~~~l~~~G~--- 258 (429)
T cd01303 204 SCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFP-----------GARD-----------YLDVYDKYGL--- 258 (429)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcC-----------CCCC-----------HHHHHHHCCC---
Confidence 568899999999999999 999999965432 111111000 0011 1222333322
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
.+.++.+.|+... +.+.++.+++.|+.+ .+||..... ++ ...+| +.++++.|+.++
T Consensus 259 -l~~~~~l~H~~~l--~~~~~~~l~~~g~~v--~~~P~sn~~-------l~---~g~~~---------~~~~~~~Gv~v~ 314 (429)
T cd01303 259 -LTEKTVLAHCVHL--SEEEFNLLKERGASV--AHCPTSNLF-------LG---SGLFD---------VRKLLDAGIKVG 314 (429)
T ss_pred -CCCCcEEEeCCCC--CHHHHHHHHHcCCEE--EECccchhh-------hc---cCCCC---------HHHHHHCCCeEE
Confidence 2567888898865 234566666777644 467753211 01 01122 345577899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH------hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccc
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR------KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 341 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~ 341 (411)
+|||..+.... ++|. +..+...+.... ..+++++++++++|.|||+++|+ +++|+|++
T Consensus 315 lGtD~~~~~~~------d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~ 379 (429)
T cd01303 315 LGTDVGGGTSF------SMLD---------TLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEV 379 (429)
T ss_pred EeccCCCCCCc------cHHH---------HHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCCCCCcCcCC
Confidence 99996432110 1110 111111111111 13579999999999999999999 56899999
Q ss_pred cCCccEEEEcCCCeeEe-CC-------CCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 342 GNHADLVVWEPEAEFEL-DN-------DHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 342 G~~ADlvv~d~~~~~~~-~~-------~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
||.|||||+|.+.+... |. . +... .-.|.+. ...|..|||+|
T Consensus 380 Gk~ADlvvld~~~~~~~~p~~~~~~~~~-d~~~----~lV~~~~--~~~V~~v~V~G 429 (429)
T cd01303 380 GKEFDAVVIDPSATPLLADRMFRVESLE-EALF----KFLYLGD--DRNIREVYVAG 429 (429)
T ss_pred CCccCEEEEcCCCccccccccccccchh-hHHH----HHeeeCC--CCCeeEEEeCC
Confidence 99999999998865332 21 1 1111 1223321 34699999998
No 88
>PRK14085 imidazolonepropionase; Provisional
Probab=99.88 E-value=6.2e-21 Score=182.97 Aligned_cols=177 Identities=16% Similarity=0.108 Sum_probs=116.1
Q ss_pred HHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHH
Q 015182 89 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 168 (411)
Q Consensus 89 ~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (411)
..+..+..+|++.+. ..++.++++++++.|+++|+++.+|+.+....
T Consensus 187 ~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~--------------------------- 233 (382)
T PRK14085 187 AVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG--------------------------- 233 (382)
T ss_pred HHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCC---------------------------
Confidence 344557778887642 24688999999999999999999999753210
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCC
Q 015182 169 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 248 (411)
Q Consensus 169 e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~l 248 (411)
..+..+++ . |. ..+.|+... +.+.++.+++.|+ .+.++|.+.+.. +.
T Consensus 234 --~~v~~~~~----~-------g~-~~i~H~~~l--~~~~~~~la~~gv--~~~~~P~~~~~~-------~~-------- 280 (382)
T PRK14085 234 --PGVRLAVE----L-------GA-ASVDHCTYL--TDADVDALAGSGT--VATLLPGAEFST-------RQ-------- 280 (382)
T ss_pred --hHHHHHHH----c-------CC-CcHHHhCCC--CHHHHHHHHHcCC--EEEECcHHHHhc-------CC--------
Confidence 01222222 1 21 236677754 3355666667775 555677642210 00
Q ss_pred CChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhH
Q 015182 249 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERP 327 (411)
Q Consensus 249 r~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~ 327 (411)
....+.++++.|+++++|||+.|... + + . .+..... .....+++++++++++|.||
T Consensus 281 ----~~~~~~~l~~aGv~v~lgsD~~~~~~---------~-----~---~--~~~~~~~~~~~~~~l~~~~al~~aT~~~ 337 (382)
T PRK14085 281 ----PYPDARRLLDAGVTVALASDCNPGSS---------Y-----T---S--SMPFCVALAVRQMGMTPAEAVWAATAGG 337 (382)
T ss_pred ----CCchHHHHHHCCCcEEEEeCCCCCCC---------h-----H---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 01234556777999999999754321 1 0 0 1111111 23356899999999999999
Q ss_pred HHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 328 AKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 328 A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
|+++|+++.|+|++|+.|||+|+|.+.
T Consensus 338 A~~lg~~~~G~l~~G~~ADlvv~d~~~ 364 (382)
T PRK14085 338 ARALRRDDVGVLAVGARADLHVLDAPS 364 (382)
T ss_pred HHHcCCCCCCCcCCCCCCCEEEEcCCC
Confidence 999999658999999999999999874
No 89
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.87 E-value=5.7e-20 Score=177.52 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=68.2
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+..+|++|+++++|.|||++||++++|+|++|++|||+|+|.+..+..+ . +.... .....|.+||++|
T Consensus 427 ~Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D~~~~~~~~-~---------~~~v~--~~~~~v~~Tik~G 494 (556)
T TIGR03121 427 DREYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVDT-D---------YADVE--KAFSTALYVFKDG 494 (556)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEeCcccccCC-c---------hHHHh--hccCCccEEEECC
Confidence 4569999999999999999999966899999999999999977433211 1 11111 1134689999999
Q ss_pred EEEEEcCcccCCCCCccc
Q 015182 391 NLVYKEGNHAPAACGSPI 408 (411)
Q Consensus 391 ~~v~~~g~~~~~~~g~~~ 408 (411)
++|+++|+++..+.|+.+
T Consensus 495 ~vV~~dGei~~~~~G~~~ 512 (556)
T TIGR03121 495 EIVVKDGEIVETPWGRTY 512 (556)
T ss_pred EEEEECCEEccCCCCcEE
Confidence 999999999988888765
No 90
>PRK06846 putative deaminase; Validated
Probab=99.87 E-value=3.2e-20 Score=179.60 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=167.7
Q ss_pred CCceeecccccCCCCCC-cc------------------------CCh----HHHHHHHHcCCceeEecCCCCCCCC--CC
Q 015182 1 MPGLIDVHAHLDDPGRT-EW------------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPS--TI 49 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~-~~------------------------~~~----~~~~~~a~~~GvTtv~d~~~~~~~~--~~ 49 (411)
+|||||+|+|+..+... .. +.. .......++.|+|+++++. +..+. ..
T Consensus 66 ~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~ 144 (410)
T PRK06846 66 LPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLK 144 (410)
T ss_pred ecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccc
Confidence 69999999999764210 00 000 1234456678999999886 33332 12
Q ss_pred CHHHHHHHHHHHhcCCceEEEEEeeecCC---CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh
Q 015182 50 STETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 126 (411)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 126 (411)
..+.+.+.++..+. .+...... +... .......+.+..+.|+..++.+ .+.. ....+.++++++++.|++
T Consensus 145 ~~~a~~e~l~e~~~--~v~~~~~a-~~~~g~~~~~~~~lL~~al~~Ga~~i~gl-~p~~---~~~~~~~~l~~~~~lA~~ 217 (410)
T PRK06846 145 NLENLQAALERYKD--GFTYEIVA-FPQHGLLRSNSEPLMREAMKMGAHLVGGV-DPAS---VDGAIEKSLDTMFQIAVD 217 (410)
T ss_pred hHHHHHHHHHHhhC--cceEEEEe-ccCcccCCccHHHHHHHHHHcCCCEEeCC-CCcc---CCcCHHHHHHHHHHHHHH
Confidence 22333333322222 23322211 1111 1122345777778898877643 2221 123567899999999999
Q ss_pred CCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----h
Q 015182 127 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD----A 202 (411)
Q Consensus 127 ~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~----~ 202 (411)
+|+++.+|+.+..... ...+++.++...+.++ ..++++.|+.. .
T Consensus 218 ~g~~v~~Hv~e~~~~~---------------------------~~~~~~~~~~~~~~gl-----~~~v~~~H~~~l~~~~ 265 (410)
T PRK06846 218 FNKGVDIHLHDTGPLG---------------------------VATIKYLVETTEEAQW-----KGKVTISHAFALGDLN 265 (410)
T ss_pred hCCCcEEEECCCCChh---------------------------HHHHHHHHHHHHHhCC-----CCCEEEEecchhhcCC
Confidence 9999999988543210 0123445555555532 23788899863 1
Q ss_pred HHHH-HHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhh
Q 015182 203 SSSL-DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 281 (411)
Q Consensus 203 ~~~~-~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k 281 (411)
++++ ++++.+++.|+.++.. .| + +. -.+| +.++++.|+.+++|||.. ..
T Consensus 266 ~~e~~~li~~la~~g~~v~~~-~~----~--------~~---g~~p---------~~~l~~~Gv~v~lGtD~~-~~---- 315 (410)
T PRK06846 266 EEEVEELAERLAAQGISITST-VP----I--------GR---LHMP---------IPLLHDKGVKVSLGTDSV-ID---- 315 (410)
T ss_pred HHHHHHHHHHHHHcCCeEEEe-CC----C--------CC---CCCC---------HHHHHhCCCeEEEecCCC-CC----
Confidence 0222 3456777888766531 11 0 00 1133 334566799999999963 21
Q ss_pred hcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeC
Q 015182 282 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 282 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
+|. |.+...+-..+........ ....++.++++++|.++ +.+++ ..+|+|+|||.|||||||.+.+..
T Consensus 316 -----~~~--p~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~-- 385 (410)
T PRK06846 316 -----HWS--PFGTGDMLEKANLLAELYRWSDERSLSRSLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAE-- 385 (410)
T ss_pred -----CCc--CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHH--
Confidence 111 1121111111211111111 01134668999999985 55777 668999999999999999764211
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
.+. ....|..||++|++||..
T Consensus 386 ---~~~-------------~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 386 ---AVA-------------RQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred ---HHH-------------hcCCceEEEECCEEEeee
Confidence 110 123689999999999975
No 91
>PRK08418 chlorohydrolase; Provisional
Probab=99.87 E-value=4.4e-21 Score=184.82 Aligned_cols=231 Identities=16% Similarity=0.053 Sum_probs=125.0
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCcccc-cc-ccCCCCHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSY-ST-YLKTRPPSWEEAA 172 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~p~~~e~~~ 172 (411)
.++..+.+.. ...++++.++++.+.|+++|+++.+|+.+... .+......|. -..+ .. +....|
T Consensus 174 ~~~~~~aph~---~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~---~~~~~~~~~~~~~~------- 240 (408)
T PRK08418 174 KFIPAIAIHS---PYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGW---FKKFFEKFLKEPKP------- 240 (408)
T ss_pred ceeEEEeCCC---CCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCc---hhhhhhhhcccccc-------
Confidence 3555555432 23578999999999999999999999877543 2212111110 0000 00 000000
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
..+.++.....+ +.+..+.|+... +.+.++.+++.|. .+..||..-.. .+. -.+|
T Consensus 241 ~~~pv~~l~~~g------~~~~~~~H~~~~--~~~di~~la~~g~--~v~~cP~sn~~-------lg~---g~~p----- 295 (408)
T PRK08418 241 LYTPKEFLELFK------GLRTLFTHCVYA--SEEELEKIKSKNA--SITHCPFSNRL-------LSN---KALD----- 295 (408)
T ss_pred cCCHHHHHHHhC------CCCeEEEecccC--CHHHHHHHHHcCC--cEEECHhHHHH-------hcC---CCcc-----
Confidence 001122222220 345667787754 2233444445565 44567853211 011 0122
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... +.| .+.++............+++++++++|.|+|+++|
T Consensus 296 ----~~~~~~~Gi~v~lGtD~~~~~~~~-----~~~---------~em~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg 357 (408)
T PRK08418 296 ----LEKAKKAGINYSIATDGLSSNISL-----SLL---------DELRAALLTHANMPLLELAKILLLSATRYGAKALG 357 (408)
T ss_pred ----HHHHHhCCCeEEEeCCCCCCCCCc-----CHH---------HHHHHHHHHhccCCccccHHHHHHHHHHHHHHHhC
Confidence 335577899999999964332110 011 11121111110001113478999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
++ .|+|++||.|||+++|.+.+. .+.. +.|+.-......|..||++|++|
T Consensus 358 ~~-~G~l~~G~~ADlv~~d~~~~~-~~~~---------~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 358 LN-NGEIKEGKDADLSVFELPEEC-TKKE---------QLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred CC-CccccCCCccCEEEEeCCCCC-CChh---------HhHHHHHhccCccceEEECCEEc
Confidence 96 799999999999999986321 1111 22332111234799999999987
No 92
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.87 E-value=9.2e-20 Score=180.14 Aligned_cols=275 Identities=18% Similarity=0.141 Sum_probs=170.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe----eec
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG----GLV 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (411)
+|||||+|+|+..+.. +++++ .+.++.+||||++++| ++.+.....+.++.+.+.+.. ..+++.+.. ..+
T Consensus 83 ~PGlIDaHvHiess~~-~p~~~---a~aal~~G~TtVv~dP-hei~nv~g~~gi~~~l~~a~~-~p~~~~~~~ps~vpa~ 156 (588)
T PRK10027 83 VPGFIDAHLHIESSMM-TPVTF---ETATLPRGLTTVICDP-HEIVNVMGEAGFAWFARCAEQ-ARQNQYLQVSSCVPAL 156 (588)
T ss_pred EECeEeccccCCcccC-CHhHH---HHHHHhCceEEEEcCC-CCcccCCCHHHHHHHHHHhhh-CCCeeEEeecccCcCC
Confidence 6999999999987653 44444 4468999999999999 777777777778777665443 334443322 111
Q ss_pred C--CCc---cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccC
Q 015182 77 P--ENA---YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 150 (411)
Q Consensus 77 ~--~~~---~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 150 (411)
+ ++. -..++++++++ .++.++.-.|+|.+. ..-+++.+.++.. + .|+++.-|+..-+..
T Consensus 157 ~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~~~V---~~~d~~~~~ki~~-~--~~~~idGH~p~l~g~--------- 221 (588)
T PRK10027 157 EGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGV---ISGQNALLDKLDA-F--RHLTLDGHCPGLGGK--------- 221 (588)
T ss_pred cccccCCCcCCHHHHHHHhcCCCceeEEeccCcccc---ccCCHHHHHHHHH-h--CCCceECCCCCCChH---------
Confidence 1 111 12456777765 588899888887643 3346677777773 3 899999999864320
Q ss_pred cCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccc
Q 015182 151 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 230 (411)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~ 230 (411)
.+...+ +. |.. -+|-+.. ..+.+++. ++|..+..--
T Consensus 222 ---------------------~L~ay~--aa---------Gi~--sDHE~~t--~eea~ekl-r~Gm~v~iRe------- 257 (588)
T PRK10027 222 ---------------------ELNAYI--AA---------GIE--NCHESYQ--LEEGRRKL-QLGMSLMIRE------- 257 (588)
T ss_pred ---------------------HHHHHH--Hc---------CCC--CCcccCC--HHHHHHHH-HCCCEEEEeC-------
Confidence 111111 11 322 3465442 33444444 4676554310
Q ss_pred cccccCCCCcceEEcCCCCChhhHHHHHHHHhc--CCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH
Q 015182 231 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 308 (411)
Q Consensus 231 ~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~--G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (411)
++.. .+.+.+...+.+ -...+++||........+ .| .+....+.
T Consensus 258 --------gS~~---------~nl~~l~~~~~~~~~~~~~l~TDd~~~~~l~~-----------~G------hi~~~vr~ 303 (588)
T PRK10027 258 --------GSAA---------RNLNALAPLINEFNSPQCMLCTDDRNPWEIAH-----------EG------HIDALIRR 303 (588)
T ss_pred --------Cccc---------cCHHHHHHHhhccCCCeEEEEcCCCChHHHHh-----------cc------CHHHHHHH
Confidence 1100 012233333322 134588999642211100 01 22233333
Q ss_pred HHh-cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~-~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
..+ .|+++++|++++|.|||+++|++++|+|++|+.|||+++|... ..++..||
T Consensus 304 av~~~Gi~~~~Ai~mAT~nPA~~lgl~d~G~IapG~~ADlvvld~l~-------------------------~~~v~~v~ 358 (588)
T PRK10027 304 LIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLSDAR-------------------------KVTVQQVL 358 (588)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEEccCC-------------------------CceEEEEE
Confidence 444 7999999999999999999999668999999999999998421 11478899
Q ss_pred ECCEEEEEcCccc
Q 015182 388 SRGNLVYKEGNHA 400 (411)
Q Consensus 388 ~~G~~v~~~g~~~ 400 (411)
++|++|+++ +..
T Consensus 359 ~~G~~v~~~-~~~ 370 (588)
T PRK10027 359 VKGEPIDAQ-TLQ 370 (588)
T ss_pred ECCEEeecc-ccc
Confidence 999999997 654
No 93
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.85 E-value=3.2e-19 Score=164.32 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++.++++++++.|+++|+++.+|+..... .+.... +.
T Consensus 159 ~~~~~~~~~iv~~A~~~gl~vasH~d~~~~-------------------------------~v~~a~----~~------- 196 (325)
T cd01306 159 AYAPANRSELAALARARGIPLASHDDDTPE-------------------------------HVAEAH----EL------- 196 (325)
T ss_pred hcCHHHHHHHHHHHHHCCCcEEEecCCChH-------------------------------HHHHHH----HC-------
Confidence 345788999999999999999999875321 112222 11
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
|... ++|..+ .+.++.++++|+.+... .| ++.. .+. ......++++++.|+.++++
T Consensus 197 Gv~~-~E~p~t----~e~a~~a~~~G~~vv~g-ap-n~lr-------g~s----------~~g~~~~~~ll~~Gv~~al~ 252 (325)
T cd01306 197 GVVI-SEFPTT----LEAAKAARELGLQTLMG-AP-NVVR-------GGS----------HSGNVSARELAAHGLLDILS 252 (325)
T ss_pred CCee-ccCCCC----HHHHHHHHHCCCEEEec-Cc-cccc-------Ccc----------ccccHhHHHHHHCCCeEEEE
Confidence 4333 345433 45666777788766542 12 1110 000 01123456778889999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 350 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~ 350 (411)
||+.|.. .+...+.+....+++++++++++|.|||+++|++++|+|++|+.||||+|
T Consensus 253 SD~~p~s-----------------------ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvv 309 (325)
T cd01306 253 SDYVPAS-----------------------LLHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILV 309 (325)
T ss_pred cCCCcHh-----------------------HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEE
Confidence 9986432 11223444556789999999999999999999966899999999999999
Q ss_pred cCC
Q 015182 351 EPE 353 (411)
Q Consensus 351 d~~ 353 (411)
|.+
T Consensus 310 d~~ 312 (325)
T cd01306 310 DDM 312 (325)
T ss_pred eCC
Confidence 965
No 94
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.85 E-value=9.6e-20 Score=157.97 Aligned_cols=302 Identities=20% Similarity=0.247 Sum_probs=179.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 77 (411)
.||+||.|+|+...+.+... +..+.+...||||++|.+ .. ...++..|.+..... .. +.++++++.+ ++.
T Consensus 56 spG~iDlHvHvy~ggt~~~v---~pd~~ga~~GvTTvVDAG-Sa--Gaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a 128 (386)
T COG3964 56 SPGLIDLHVHVYYGGTEGGV---RPDMYGAPNGVTTVVDAG-SA--GAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTA 128 (386)
T ss_pred ccCeeeeeeEEecCCCccCc---CHHHccccCCceEEEecC-Cc--CccchhhHHHHhhcchhheeeeeeeccCcc-eee
Confidence 49999999999866554332 345678899999999998 32 335566666543222 11 2344444332 221
Q ss_pred CC----c--cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhc
Q 015182 78 EN----A--YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 148 (411)
Q Consensus 78 ~~----~--~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 148 (411)
.+ . -+.+++.+..+ .-+.|+|+-++......+ -+ .-++...+.|+..++|+++|..++..-
T Consensus 129 ~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~-Gi--tPl~la~~ia~~~klPlmvHigePp~~------- 198 (386)
T COG3964 129 SNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEY-GI--TPLTLALRIANDLKLPLMVHIGEPPVL------- 198 (386)
T ss_pred ehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeecccccc-CC--chHHHHHHHHhhcCCceEEecCCCCcc-------
Confidence 11 1 12345555544 346789987765432222 22 346777888899999999998876431
Q ss_pred cCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--------H-HHHHHHHHHhHCCCCE
Q 015182 149 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--------S-SSLDLLMEAKTNGDSI 219 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--------~-~~~~~i~~~~~~g~~i 219 (411)
..++++....- + .+.||.+. + .-...+++++++|+.+
T Consensus 199 ------------------------~dEvlerL~~G-------D---IitHcfngkpn~~l~~dg~vr~~vrra~erGV~f 244 (386)
T COG3964 199 ------------------------MDEVLERLRRG-------D---IITHCFNGKPNTILTDDGVVRAEVRRARERGVIF 244 (386)
T ss_pred ------------------------HHHHHHhccCC-------c---eeeeeccCCCCCccccchhHHHHHHHHHhcceEE
Confidence 22334433321 2 24454421 0 1334677778888644
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
-+-..-.+ .+.+..++++.+|. ++.|+||-..++. +.+-
T Consensus 245 D~ghG~as------------------------fsf~vAr~aia~GllP~~ISSDlh~~~~----------------~n~P 284 (386)
T COG3964 245 DAGHGRAS------------------------FSFNVARRAIANGLLPDIISSDLHTITK----------------LNGP 284 (386)
T ss_pred EccCCcce------------------------eeHHHHHHHHhcCCCcceeeccceeeee----------------cCch
Confidence 33211111 12345566788887 6799999533321 0111
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~ 378 (411)
.+.+...++++..-||++.++++++|.|||..++++++|+|+||..|||+||+.......-.+ .. ...+.+.+
T Consensus 285 v~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa~G~~aD~tvf~lk~~~~e~vD--a~-----gdsl~a~~ 357 (386)
T COG3964 285 VYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLAPGAFADITVFKLKNRHVEFVD--AH-----GDSLTATH 357 (386)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccCCCcccceEEEEeccCceEEEe--cc-----Cchhehhe
Confidence 223444455556779999999999999999999998899999999999999997753221111 00 11222111
Q ss_pred EEeEEEEEEECCEEEEEcCcccC
Q 015182 379 LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 379 ~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+- .+.+++++|+...+.+++..
T Consensus 358 ll-vp~~ai~a~~~~~r~~~~~a 379 (386)
T COG3964 358 LL-VPQMAIKAGEYLFRQIDFGA 379 (386)
T ss_pred ec-CCHHHhhhcchhhhhhhhcc
Confidence 11 24677888887777665543
No 95
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.85 E-value=4.2e-19 Score=169.13 Aligned_cols=276 Identities=24% Similarity=0.295 Sum_probs=176.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEee----ec
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG----LV 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (411)
.|||||.|+|+..... + ..+-.++.+..||||++--| ..-....-.+.++.+.+.++. ..+++.++.. .+
T Consensus 76 vPGfID~H~HIESSm~-t---P~~FA~~Vlp~GtTtvV~DP-HEIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat 149 (584)
T COG1001 76 VPGFIDAHLHIESSML-T---PSEFARAVLPHGTTTVVSDP-HEIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPAT 149 (584)
T ss_pred ccceeecceecccccc-C---HHHHHHHhhccCceEEeeCc-HHHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCC
Confidence 5999999999975322 2 23456788999999998765 211122234566666665553 5677765532 11
Q ss_pred C-CCc-c--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 77 P-ENA-Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 77 ~-~~~-~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+ ++. . ..+.++++++ ..+.++.-.|++.+. ...++.+-..++.+++.|++|.-|+.+-+..+
T Consensus 150 ~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~pgV----i~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~--------- 216 (584)
T COG1001 150 PFETSGAELTAEDIKELLEHPEVIGLGEMMNFPGV----IEGDPDMLAKLEAARKAGKPVDGHAPGLSGKE--------- 216 (584)
T ss_pred ccccCCceecHHHHHHHhhCCCccchhhhcCCchh----ccCCHHHHHHHHHHHHcCCeecccCCCCChHH---------
Confidence 1 111 1 2456777775 578888888887643 23456677778899999999999998854211
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
+...+. + |.+ -.|-+.. ..|.+++. +.|..+..--
T Consensus 217 ---------------------Ln~Y~a-a----------Gi~--tDHE~~t--~EEa~~kl-r~Gm~i~iRe-------- 251 (584)
T COG1001 217 ---------------------LNAYIA-A----------GIS--TDHESTT--AEEALEKL-RLGMKIMIRE-------- 251 (584)
T ss_pred ---------------------HHHHHh-c----------CCC--cCcccCC--HHHHHHHH-hCCcEEEEEc--------
Confidence 111111 1 322 3464442 34555555 4576554310
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
|+. ..+...+...+.+ | ...+++||........ . +..+..+.+..
T Consensus 252 -------GS~---------a~dl~~l~~~i~e~~~~~~~lcTDD~~p~dl~-----------~------eGhld~~vR~A 298 (584)
T COG1001 252 -------GSA---------AKDLAALLPAITELGSRRVMLCTDDRHPDDLL-----------E------EGHLDRLVRRA 298 (584)
T ss_pred -------Cch---------hhhHHHHHHHHhhcCCceEEEECCCCChhHhh-----------h------cCCHHHHHHHH
Confidence 110 1233455555544 4 3478899964221111 1 12345556667
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEEC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 389 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~ 389 (411)
.++|+++.+|++|+|+|||+.+|+++.|.|+||..|||++++ ++. .-+|..|+++
T Consensus 299 i~~Gv~p~~a~qmAtiN~A~~~gl~~~G~iAPG~~ADlvi~~-----------DL~--------------~~~v~~V~~~ 353 (584)
T COG1001 299 IEEGVDPLDAYQMATINPAEHYGLDDLGLIAPGRRADLVILE-----------DLR--------------NFKVTSVLIK 353 (584)
T ss_pred HHcCCCHHHHHHHHhcCHHHHcCCcccccccCCccccEEEEc-----------ccc--------------cCceeEEEEC
Confidence 789999999999999999999999779999999999999998 221 1268999999
Q ss_pred CEEEEEcCc
Q 015182 390 GNLVYKEGN 398 (411)
Q Consensus 390 G~~v~~~g~ 398 (411)
|++|.++|.
T Consensus 354 G~~v~~~g~ 362 (584)
T COG1001 354 GRVVAEDGK 362 (584)
T ss_pred CEEEecCCc
Confidence 999999996
No 96
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.84 E-value=6.5e-21 Score=188.55 Aligned_cols=267 Identities=20% Similarity=0.156 Sum_probs=153.4
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHH--HH----HCCceEE
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LL----NAGVLGL 97 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~g~~~i 97 (411)
...+.+++.||||++|+.. ... ..++.++...+. ++..+++................... .. ...+.++
T Consensus 187 ~~~~~~~~~GiT~v~d~~~-~~~--~~~~~~~~l~~~--~~l~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 261 (479)
T cd01300 187 AAARELASLGVTTVHDAGG-GAA--DDIEAYRRLAAA--GELTLRVRVALYVSPLAEDLLEELGARKNGAGDDRLRLGGV 261 (479)
T ss_pred HHHHHHHhCCCcEEEcCCC-Chh--hHHHHHHHHHHC--CCCeEEEEEEeccccchhhhhhHHhhhccCCCCCcEEEeeE
Confidence 3456778999999999862 111 113445544332 33344443321111111000011100 00 1246789
Q ss_pred EEeccCC----------------CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 98 KSFMCPS----------------GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 98 k~~~~~~----------------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
|+|++.. +..|.+.+++++++++++.|+++|++|.+|+.++..+...+
T Consensus 262 Kl~~DG~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l---------------- 325 (479)
T cd01300 262 KLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVL---------------- 325 (479)
T ss_pred EEEEcCCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHH----------------
Confidence 9988742 11334678999999999999999999999999865543221
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC--CC
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD--GD 239 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~--~~ 239 (411)
.+++.+ ..+. +..+.++.++|++.. +.+.++++++.|+ .+++||++++........ .+
T Consensus 326 ---------~~~~~~---~~~~----g~~~~r~~i~H~~~~--~~~~~~~l~~~gv--~~~~~P~~~~~~~~~~~~~~lg 385 (479)
T cd01300 326 ---------DALEAA---LKDN----PRADHRHRIEHAQLV--SPDDIPRFAKLGV--IASVQPNHLYSDGDAAEDRRLG 385 (479)
T ss_pred ---------HHHHHH---HHhc----CCCCCCceeeecccC--CHHHHHHHHHcCC--ceEeCcccccCchHHHHHhccc
Confidence 111111 1111 112578899999876 3467777878775 557889876554322111 11
Q ss_pred -cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHH
Q 015182 240 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318 (411)
Q Consensus 240 -~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 318 (411)
.+....+ .+..+++.|+.+++|||+.+.+. ++|..++.++.......... ...++++|+++
T Consensus 386 ~~~~~~~~---------p~~~~~~~Gv~v~lGSD~~~~~~-------~p~~~~~~av~~~~~~~~~~--~~~~~~ls~~~ 447 (479)
T cd01300 386 EERAKRSY---------PFRSLLDAGVPVALGSDAPVAPP-------DPLLGIWAAVTRKTPGGGVL--GNPEERLSLEE 447 (479)
T ss_pred HHHHhcCc---------hHHHHHHCCCeeeccCCCCCCCC-------CHHHHHHHHheeeCCCCCCC--CCccccCCHHH
Confidence 1112222 34456788999999999743221 22221111111000000000 01345799999
Q ss_pred HHHHHhHhHHHHhCC-CCCCcccccCCccEEE
Q 015182 319 LASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 319 al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
+++++|.|||+++|+ +++|+|++||.|||||
T Consensus 448 al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 448 ALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred HHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 999999999999999 6789999999999986
No 97
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=171.88 Aligned_cols=216 Identities=19% Similarity=0.172 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..++++.++.+.+.++++|+++.+|+.+... +....... ..+| .+.....++
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~-------------g~~~-----------~~~~~~~g~--- 245 (421)
T COG0402 193 YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPY-------------GARP-----------VERLDLLGL--- 245 (421)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhc-------------CCCH-----------HHHHHHcCC---
Confidence 3578999999999999999999999977543 22211101 1111 111111111
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 267 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~ 267 (411)
.+.+..+.|+... ...+ ++..++.|+ .+..||.. +++ +.. ..| +.++++.|+.+
T Consensus 246 -l~~~~~~~H~~~~-~~~e-~~~l~~~g~--~v~~cP~sN~~L--------~sG--~~p----------~~~~~~~gv~v 300 (421)
T COG0402 246 -LGSHTLLAHCVHL-SEEE-LELLAESGA--SVVHCPRSNLKL--------GSG--IAP----------VRRLLERGVNV 300 (421)
T ss_pred -CCCCeEEEEeccC-CHHH-HHHHhhCCC--eEEECcchhccc--------cCC--CCC----------HHHHHHcCCCE
Confidence 1455666666654 2222 222335565 45578843 222 111 112 24557779999
Q ss_pred EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC----CCHHHHHHHHhHhHHHHhCCCCCCcccccC
Q 015182 268 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG----VTLEQLASWWSERPAKLAGQVSKGAIAIGN 343 (411)
Q Consensus 268 ~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----l~~~~al~~~T~n~A~~lg~~~~G~I~~G~ 343 (411)
.+|||...+++... +| .+.....+++...... ... ++++++|.|+|++||+.+.|+|++|+
T Consensus 301 ~~gTD~~~~~~~~d-----~l---------~~~~~a~~l~~~~~~~~~~~~~~-~~l~~aT~~gA~alg~~~~G~le~G~ 365 (421)
T COG0402 301 ALGTDGAASNNVLD-----ML---------REMRTADLLQKLAGGLLAAQLPG-EALDMATLGGAKALGLDDIGSLEVGK 365 (421)
T ss_pred EEecCCccccChHH-----HH---------HHHHHHHHHHHhhcCCCcccchH-HHHHHHHhhHHHHcCCcccCCccccc
Confidence 99999876654221 12 1223333333222211 112 38999999999999997799999999
Q ss_pred CccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 344 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 344 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
.|||||+|.+.+...+.. . .+ ...|.. ....|..|+++|+.++.++++.
T Consensus 366 ~ADlvvld~~~~~~~~~~-~-~~----~~v~~~--~~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 366 KADLVVLDASAPHLAPLR-P-VS----RLVFAA--GGKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred ccCEEEEcCCCCcccccc-H-HH----HHHHhc--CCCceeEEEECCEEEEEcceeh
Confidence 999999999875333221 0 00 011111 1237999999999999998765
No 98
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.83 E-value=1.2e-18 Score=165.44 Aligned_cols=178 Identities=26% Similarity=0.341 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
..+..++..++.. ++|.+|+..... +..+++++++. +.++
T Consensus 180 ~~l~~l~~~~~~~-~~v~vHa~~~~~--------------------------------i~~~l~~~~e~-------g~~~ 219 (359)
T cd01309 180 LKLEALLPVLKGE-IPVRIHAHRADD--------------------------------ILTAIRIAKEF-------GIKI 219 (359)
T ss_pred ccHHHHHHHHcCC-eeEEEEeCCHHH--------------------------------HHHHHHHHHHc-------CCCE
Confidence 3455666555533 999999987432 44556666665 6778
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC-CccEEcCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDH 273 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G-~~~~~~sD~ 273 (411)
.+.|+... .+.++++++.|+.+. ++|.+..... . .... .....+..+++.| +.++++||+
T Consensus 220 ~i~H~~~~---~~~~~~la~~gv~v~--~~P~~~~~~~--~----------~~~~--~~~~~~~~l~~aGGv~valgsD~ 280 (359)
T cd01309 220 TIEHGAEG---YKLADELAKHGIPVI--YGPTLTLPKK--V----------EEVN--DAIDTNAYLLKKGGVAFAISSDH 280 (359)
T ss_pred EEECchhH---HHHHHHHHHcCCCEE--ECcccccccc--H----------HHhh--cchhhHHHHHHcCCceEEEECCC
Confidence 89998753 445666667776543 5564321110 0 0000 0112333456677 999999997
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP 352 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~ 352 (411)
|.... . .+..........+++++++++++|.|||+++|+ +++|+|++|+.|||||||.
T Consensus 281 -~~~~~-------------------~-~l~~~~~~a~~~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~ 339 (359)
T cd01309 281 -PVLNI-------------------R-NLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNG 339 (359)
T ss_pred -CCccc-------------------h-hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccCEEEECC
Confidence 32110 0 111112223467899999999999999999999 5679999999999999997
Q ss_pred CCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++ +. . ..+|..||++|++||
T Consensus 340 dp-l~------------------~---~~~v~~v~i~G~~v~ 359 (359)
T cd01309 340 DP-LE------------------P---TSKPEQVYIDGRLVY 359 (359)
T ss_pred Cc-cc------------------c---cCcccEEEECCEEeC
Confidence 62 11 1 236899999999986
No 99
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.82 E-value=1.1e-17 Score=159.65 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=140.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeecC-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVP- 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 77 (411)
+|||||+|+|+..++....++.. ..++++|||++++++ .+.+ ...+.+.+..+....+. .+++... +..+
T Consensus 49 ~PG~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-G~~~~ 121 (365)
T TIGR03583 49 SAGWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAG-STGA--DDIDDFYRLAQQAKTNVFALLNISRI-GLVAQ 121 (365)
T ss_pred ecCEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCC-CCCC--CCHHHHHHHHHhhCCcEEEEeeehhc-cccCh
Confidence 69999999999866554444442 447899999999987 4333 45555555443322111 1222212 2211
Q ss_pred CC-----ccchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 EN-----AYNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~-----~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
.. ...++++.++.+ .++.++|.+|+.....+. .+++.++.+.+..+ +.+++|.+|+......
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~-gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~-------- 191 (365)
T TIGR03583 122 DELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDN-GIEPLEIAKQIQQE-NLELPLMVHIGSAPPE-------- 191 (365)
T ss_pred hhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccC-CcCHHHHHHHHHHh-cCCCcEEEEeCCCccC--------
Confidence 11 112334444433 247788888874322221 22355555555444 7899999999875421
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH----------HHHHHHHhHCCCCE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS----------LDLLMEAKTNGDSI 219 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~----------~~~i~~~~~~g~~i 219 (411)
+.++++... .| . .+.|+.+. .. .+.+....+.|+
T Consensus 192 -----------------------~~~i~~~~~--------~g-~-~~~H~fng-~~~~~~r~~g~~~~~~~~~l~~G~-- 235 (365)
T TIGR03583 192 -----------------------LDEILALME--------KG-D-VLTHCFNG-KPNGILRETGEVKPSVLEAYNRGV-- 235 (365)
T ss_pred -----------------------HHHHHHHhc--------CC-C-eeeeeecC-CCCCCCCCcchHHHHHHHHHhCeE--
Confidence 122222211 13 2 35676543 11 133444444453
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
.+++. |+. .+ . ..+........+. ..+.++|. +.. + ..++-
T Consensus 236 i~d~~-hg~----------------~~-~----~~~~~~~~~~~~~~~~td~~d~-~~~--------~-------~~~gp 277 (365)
T TIGR03583 236 ILDVG-HGT----------------AS-F----SFHVAEKAKRAGIFPDTISTDI-YIR--------N-------RINGP 277 (365)
T ss_pred EEEeC-CCC----------------CC-c----hHHHHHHHHhCCCCCccccccc-ccC--------C-------CccCc
Confidence 33322 000 00 0 0111112222332 23444553 110 0 11111
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
...+...++.+...|++++++++++|.|||++||+++.|+|++|+.|||+|||.+.
T Consensus 278 ~~~l~~~~~~~~~~g~~~~ea~~~~t~npa~~~gl~~~g~i~~g~~ad~~~~~~~~ 333 (365)
T TIGR03583 278 VYSLATVMSKFLALGYSLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFTVKA 333 (365)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcccEEEEecCC
Confidence 11233334444457899999999999999999999548999999999999999753
No 100
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.80 E-value=6.5e-18 Score=161.25 Aligned_cols=126 Identities=18% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCceeecccccCCCC-C--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEe--e
Q 015182 1 MPGLIDVHAHLDDPG-R--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWG--G 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~-~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 74 (411)
+|||||+|+|...+. + ..++++...++.++++||||+++++ .+.+.....+.+..+.+..+.. ....++++. .
T Consensus 50 ~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP 128 (374)
T cd00854 50 VPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGP 128 (374)
T ss_pred cccEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeeccc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecC
Confidence 699999999997532 2 2357788889999999999999998 5554333333444444433222 122222221 1
Q ss_pred ecCC------C-----ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHH--HHHHHHHHhCCCcEE-EecCC
Q 015182 75 LVPE------N-----AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI--KEGLSVLARYKRPLL-VHAEM 137 (411)
Q Consensus 75 ~~~~------~-----~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~ 137 (411)
.... . ....++++++.+.+.+.+|++. +.+|.. .++++.++++|++++ .|...
T Consensus 129 ~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~t----------laPE~~~~~~~i~~~~~~gi~v~~GH~~a 195 (374)
T cd00854 129 FISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLVT----------LAPELDGALELIRYLVERGIIVSIGHSDA 195 (374)
T ss_pred ccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEEE----------ECCCCCChHHHHHHHHHCCeEEEeeCCcC
Confidence 1100 0 0123567777776677899863 234444 788999999999995 89764
No 101
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.7e-18 Score=157.61 Aligned_cols=215 Identities=18% Similarity=0.180 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++.+.+...-+.|+.+.+++..|..+. ..++..... +. +...+..+++..... ++
T Consensus 216 ~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~f-------------f~------~~~~y~~~yd~~~lL---~~- 272 (439)
T KOG3968|consen 216 SCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNF-------------FP------EKLSYTDVYDKGGLL---TE- 272 (439)
T ss_pred CCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHh-------------hh------hcccchHHHHHhccc---ch-
Confidence 4667778888888888999999998664 333311110 00 001112222222111 10
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.-.-.|.+|++.. .++++ +++|..+ ..||..-+.- ..-.|+ ++++|+.|+++.+
T Consensus 273 ktvlaH~~hl~d~--ei~~l---~k~g~sv--shCP~Sn~~L----------~sG~~~---------vr~lL~~~v~VgL 326 (439)
T KOG3968|consen 273 KTVLAHLEHLSDE--EIELL---AKRGCSV--SHCPTSNSIL----------GSGIPR---------VRELLDIGVIVGL 326 (439)
T ss_pred HhHhhhheecCch--hHHHH---HhcCCce--EECCcchhhh----------ccCCcc---------HHHHHhcCceEee
Confidence 0223566776653 44444 3456544 4677532110 001232 3456888999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADL 347 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADl 347 (411)
|||.++.+.-... .....+...+.... ..++|++++|.++|.|+|++||+ +..|++++||.+|+
T Consensus 327 GtDv~~~s~l~a~--------------r~A~~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDa 392 (439)
T KOG3968|consen 327 GTDVSGCSILNAL--------------RQAMPMSMHLACVLDVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDA 392 (439)
T ss_pred cCCccccccHHHH--------------HHHHHHHHHHHhccCcccCCHHHHHHHHhccchhhccCCCcccceecccccce
Confidence 9998764321100 00111111111111 25799999999999999999999 66999999999999
Q ss_pred EEEcCCCeeE----eC-CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 348 VVWEPEAEFE----LD-NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 348 vv~d~~~~~~----~~-~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
+++|.+.+.. .+ .+ ++.+ .-.|.|. ..++..|||+|+.|++
T Consensus 393 i~id~s~~~~~l~~~~~~~-~lI~----~~v~~g~--drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 393 IIIDLSAPESPLYRFSGHH-DLIS----KVVYNGD--DRNIAEVFVAGKLVKQ 438 (439)
T ss_pred EEEeCCCCcchhhhccchH-HHHH----HHHhcCC--CCceEEEEEccEEecc
Confidence 9999886410 00 00 1111 1122221 1279999999999875
No 102
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.77 E-value=1.6e-17 Score=154.11 Aligned_cols=288 Identities=26% Similarity=0.292 Sum_probs=150.9
Q ss_pred CCceeecccc--cCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec
Q 015182 1 MPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 76 (411)
Q Consensus 1 lPGlID~H~H--~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (411)
+|||||+|+| +... +....+......+.++.+|||++++++ +. ....+...... ...........
T Consensus 8 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~~~~~~~~ 76 (304)
T PF13147_consen 8 LPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGYPGSGAGP 76 (304)
T ss_dssp EE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEEEEECESC
T ss_pred ccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----ccccccccccc
Confidence 6999999999 3222 223344455677889999999999976 22 12222222111 11112211111
Q ss_pred C-CCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCC-CcEEEecCCcccchhhhhhccCcCCc
Q 015182 77 P-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 77 ~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ........+........ .++...+. ......+....+.+.+.| +.+..|+... ......... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~ 142 (304)
T PF13147_consen 77 RGTTIEELEALVDLIAAEG--VGFVAAYN------GIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAEG-----L 142 (304)
T ss_dssp CHHHHHHHHHHHHHHHHTE--EEEESSST------HHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHHH-----H
T ss_pred cccchHHHHHHHHHHhhcC--cceeeccc------cCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHhc-----c
Confidence 0 00112223333333333 33322110 235677888888899999 5555555543 111111000 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.... .. ..+...+...+..... ... +..+++...... .....+......++...... .+......
T Consensus 143 ~~~~-~~-~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (304)
T PF13147_consen 143 DAME-HI-LPHEVAEALHLAEALA--QGA-------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH---LLARDAAA 207 (304)
T ss_dssp HTTH-HS-THHHHHHHHHHHHHHH--HHH-------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE---HHHHHHHH
T ss_pred cchh-hh-hhhhHHHHHHHHHHhh--hcc-------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH---hhHHHHHh
Confidence 0000 00 0111222222222222 211 344444444443 22222333444454333322 11110000
Q ss_pred cCCCCcceEEcCCCC--ChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 235 IPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr--~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
.+......||++ .......+++++++|+.++++||+.+.... +....+..........
T Consensus 208 ---~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~~~~~~~~ 267 (304)
T PF13147_consen 208 ---AGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEAMRLAVRA 267 (304)
T ss_dssp ---HGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHHHHHHHHT
T ss_pred ---cCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhhhhHHhhc
Confidence 134567888877 777888999999999999999998765320 0112334444455668
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 348 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlv 348 (411)
|++++++++++|.|||++||+ .++|+|++||+||||
T Consensus 268 gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 268 GLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp SSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 999999999999999999999 889999999999997
No 103
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=4.1e-16 Score=141.66 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEE---eEEEEEEECC
Q 015182 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG 390 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~---~~v~~ti~~G 390 (411)
++++.+++..|..+|..+|+.++|.|++|+.|||+|+|+.....+.. +. .. .-|+.|.... -.|..|+|.|
T Consensus 474 l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp~~vr~~a~----y~-~~-~lPa~G~~~~~vn~~~vat~v~G 547 (579)
T COG3653 474 LSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDPHLVRDVAT----YT-EP-ALPAYGILRVMVNRNVVATGVGG 547 (579)
T ss_pred ccHHHHHHHHhccHHHHhCcccccccccccccceEEEcccccccccc----cc-Cc-cCCCCcceEEEEeccceeeecce
Confidence 99999999999999999999779999999999999999864322211 11 11 4688876543 2367888889
Q ss_pred EEEEEcCcccCC-CCCccccC
Q 015182 391 NLVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 391 ~~v~~~g~~~~~-~~g~~~~~ 410 (411)
.++|++|+++++ .+|+++|.
T Consensus 548 vvs~rdGe~tg~~~aGR~lR~ 568 (579)
T COG3653 548 VVSFRDGEFTGQVKAGRYLRA 568 (579)
T ss_pred eEEEecCcccCcccccchhcc
Confidence 999999999985 88988874
No 104
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.7e-15 Score=132.03 Aligned_cols=285 Identities=20% Similarity=0.238 Sum_probs=184.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEEe--eecC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWG--GLVP 77 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~ 77 (411)
..-.|+|+|+++..+ ..+.--..+.++...+-|| |..|++.+.+...+++++... ...-++.+.. .+++
T Consensus 8 ~rPdDwHlHLRdg~m------L~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYLtd 80 (344)
T COG0418 8 RRPDDWHLHLRDGAM------LKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTD 80 (344)
T ss_pred cCccceeEEecCccH------HHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEEecC
Confidence 345799999997532 2233334455888888999 888887776654444433211 1111222211 1233
Q ss_pred CCccchHHHHHHHHCC-ceEEEEeccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc
Q 015182 78 ENAYNASALEALLNAG-VLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 78 ~~~~~~~~~~~~~~~g-~~~ik~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
.. ..+++.+..+.| +.++|+|....+.+. ....+-+.+..+++...+.|+++.+|-+-........
T Consensus 81 ~~--~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDif---------- 148 (344)
T COG0418 81 ST--TPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIF---------- 148 (344)
T ss_pred CC--CHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccch----------
Confidence 21 234677777776 789999986643221 1234568888999999999999999988754311111
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
..|..-+..+++-..+. .+..++.++|+++. +..+.++.. +.++.+++.||||+++..++
T Consensus 149 -----------drE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~---~~nlaATIT~hHL~~nrnd~ 208 (344)
T COG0418 149 -----------DREAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDA---NNNLAATITPHHLLLNRNDM 208 (344)
T ss_pred -----------hhHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhc---CcceeeEeehhheeeehhhh
Confidence 11222344455533322 34789999999998 777777755 45688999999999988776
Q ss_pred CCCC--cceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHH
Q 015182 236 PDGD--TRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYG 309 (411)
Q Consensus 236 ~~~~--~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~ 309 (411)
--.| +...|.|-++...++.+|+++..+|-. ..+|||.+||....|. ...|+.|.-. .++.+.+ +
T Consensus 209 l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke--------~~cgcAG~fsap~al~~~Ae-v 279 (344)
T COG0418 209 LVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKE--------SACGCAGIFSAPFALPLYAE-V 279 (344)
T ss_pred hcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccc--------cccccccccccHhHHHHHHH-H
Confidence 5434 667788999999999999999888764 6889999999865553 2335555432 3333222 2
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
.++-=.++..-..+|.|+.++.|++
T Consensus 280 FE~~naL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 280 FEEENALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred HHHhcHHHHHHHHHhhcCcceeccc
Confidence 2333346666667899999999994
No 105
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.75 E-value=3.9e-18 Score=161.12 Aligned_cols=40 Identities=38% Similarity=0.532 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEc
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE 351 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d 351 (411)
.+++++++++++|.|||++||+ +++|+|++||+|||||||
T Consensus 293 ~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 293 LGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 3499999999999999999999 889999999999999997
No 106
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.75 E-value=4.2e-16 Score=148.11 Aligned_cols=60 Identities=27% Similarity=0.348 Sum_probs=52.4
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
+...+++++++++++|.|||+++|+ +++|+|++|+.|||+|||.+ .+|..||
T Consensus 321 ~~~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld~~---------------------------~~v~~v~ 373 (382)
T PRK11170 321 VEHVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRD---------------------------FKITKTI 373 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEECCC---------------------------CcEEEEE
Confidence 3457899999999999999999999 45799999999999999944 1478999
Q ss_pred ECCEEEEE
Q 015182 388 SRGNLVYK 395 (411)
Q Consensus 388 ~~G~~v~~ 395 (411)
++|+.++.
T Consensus 374 ~~G~~~~~ 381 (382)
T PRK11170 374 VNGNEVVT 381 (382)
T ss_pred ECCEEeec
Confidence 99999874
No 107
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.74 E-value=3.4e-16 Score=148.32 Aligned_cols=42 Identities=31% Similarity=0.521 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCC-CCCcccccCCccEEEEcCC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPE 353 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~-~~G~I~~G~~ADlvv~d~~ 353 (411)
.+++++++++++|.|||+++|++ ++|+|++|+.|||+|||.+
T Consensus 327 ~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~ 369 (380)
T TIGR00221 327 TNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPD 369 (380)
T ss_pred hCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECCC
Confidence 46999999999999999999994 4799999999999999955
No 108
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.6e-16 Score=135.11 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=69.4
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHHHHHHHhHhHHHHhCCC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~al~~~T~n~A~~lg~~ 334 (411)
...+..+.|+.++++||+.|.+. +...+.+..+. .+++.||++++|.|||+++|+.
T Consensus 285 sA~ela~~glLDiLsSDY~P~SL-----------------------l~A~F~La~~~~~~~lpqAvalvt~nPA~algl~ 341 (377)
T COG3454 285 SARELAQHGLLDILSSDYVPASL-----------------------LHAAFRLADLGSNISLPQAVALVTKNPARALGLT 341 (377)
T ss_pred hHHHHHhCCceeeecccCCcHHH-----------------------HHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCC
Confidence 44556677999999999876543 22222222222 3589999999999999999998
Q ss_pred CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 335 ~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++|+|+||++||||.+..+. ..| .|..||+.||-|+
T Consensus 342 DRG~Ia~GlrADlv~v~~~~----------------~vp--------~ir~vwr~G~rv~ 377 (377)
T COG3454 342 DRGRIAPGLRADLVRVRRDG----------------GVP--------VIRTVWRAGKRVA 377 (377)
T ss_pred cccccccccccceEEEecCC----------------CCc--------eeeeeeecceecC
Confidence 89999999999999876442 122 4889999999774
No 109
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.3e-15 Score=139.62 Aligned_cols=61 Identities=33% Similarity=0.347 Sum_probs=53.2
Q ss_pred HHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 308 YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 308 ~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
.....+.+++||++|+|.|||+.+|+ +++|+|++||+||||+||.| -+|..|
T Consensus 319 ~v~~~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d---------------------------~~v~~T 371 (380)
T COG1820 319 LVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDD---------------------------LNVKAT 371 (380)
T ss_pred HHHHhCCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCC---------------------------CcEEEE
Confidence 34445799999999999999999999 67899999999999999955 158999
Q ss_pred EECCEEEEE
Q 015182 387 ISRGNLVYK 395 (411)
Q Consensus 387 i~~G~~v~~ 395 (411)
|++|+++|.
T Consensus 372 ~i~G~~~~~ 380 (380)
T COG1820 372 WINGEKVFN 380 (380)
T ss_pred EECCEEeeC
Confidence 999999873
No 110
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.71 E-value=5.1e-16 Score=139.85 Aligned_cols=286 Identities=25% Similarity=0.364 Sum_probs=173.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCC--------CHHHHHHHHHHHhcCCceEEEEEe
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--------STETLKLKVDAAEKRIYVDVGFWG 73 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
-|-||+|+|+-.| .....|+++||||+..-+ +.|... ..-.+.++.+.++ ...+++++.+
T Consensus 129 AGGiDtHiHfI~P---------qqi~~Al~sGiTtmiGGG--tGpa~Gt~aTT~TpG~w~i~rMl~a~d-~~p~N~g~lg 196 (568)
T COG0804 129 AGGIDTHIHFICP---------QQIEEALASGITTMIGGG--TGPADGTNATTCTPGPWHIARMLQAAD-GLPMNIGFLG 196 (568)
T ss_pred eccccceeEEecH---------HHHHHHHhcCcEEEecCc--cCCCCCcccccccCCHHHHHHHHHhhh-cCceeeEEee
Confidence 4789999999765 246789999999998654 222111 1124555555444 4678998875
Q ss_pred eecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 74 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
- .+......+.++++.|+.++|+.-+ +-.++..++.++..|.+++++|++|...-....
T Consensus 197 K---Gn~s~~~~L~Eqi~aGa~GlKlHED-------WG~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsG----------- 255 (568)
T COG0804 197 K---GNASNPAPLAEQIEAGAIGLKLHED-------WGATPAAIDTCLSVADEYDVQVAIHTDTLNESG----------- 255 (568)
T ss_pred c---CCCCCchhHHHHHhhccceeEeecc-------cCCCHHHHHHHHhhhhhhceEEEEeeccccccc-----------
Confidence 2 2333445688889999999999643 346789999999999999999999987633211
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
-++..+...+ |.-+|..|...+ -..-++|+.+...++ +-++++|.--|.-
T Consensus 256 ------------------fvEdTi~A~~---------gRtIHtyHtEGAGGGHAPDiikv~~~~Nv-LPsSTNPT~Pytv 307 (568)
T COG0804 256 ------------------FVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDIIKVAGQPNV-LPSSTNPTRPYTV 307 (568)
T ss_pred ------------------chHhHHHHhc---------CceeEEeeccCCCCCCccHHHHHccCCCc-CcCCCCCCCCccc
Confidence 1333343333 667888886532 035578887755443 2234455322110
Q ss_pred ccccCC-CCc---ceEEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 232 AEEIPD-GDT---RFKCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 232 ~~~~~~-~~~---~~~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
..+.+ +.- .....|. +|.. ...+-|.++ |....++||......
T Consensus 308 -NT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhDm---GafSmisSDSQAMGR---------------- 367 (568)
T COG0804 308 -NTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETIAAEDILHDM---GAFSMISSDSQAMGR---------------- 367 (568)
T ss_pred -ccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhhhHHHHHhhc---cceEEeccchHhhhc----------------
Confidence 00000 000 0001111 2211 111222222 888899999643211
Q ss_pred CchhhhHHHHHHHH---HH-hc-----------CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEe
Q 015182 295 ISSLQFVLPVTWSY---GR-KY-----------GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFEL 358 (411)
Q Consensus 295 ~~~~~~~~~~~~~~---~~-~~-----------~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~ 358 (411)
.| | .....|+. +. +. .+...+-+..+|+|||-.-|+ +.+||+++||.||||+|++.
T Consensus 368 -vG-E-vi~RtwQtA~kmK~qrG~L~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa----- 439 (568)
T COG0804 368 -VG-E-VITRTWQTADKMKKQRGALPEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA----- 439 (568)
T ss_pred -cc-h-hhhhHHHHHHHHHHhcCCCCCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh-----
Confidence 00 1 11112221 11 11 145778899999999999999 88999999999999999964
Q ss_pred CCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 359 ~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
. +-.++.+|+.+|-+.+.
T Consensus 440 ----F---------------FGvKP~~vlkgG~ia~a 457 (568)
T COG0804 440 ----F---------------FGVKPELVLKGGMIAWA 457 (568)
T ss_pred ----h---------------cCCCcceEEecceeeee
Confidence 1 12468889999988885
No 111
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=99.67 E-value=1.6e-15 Score=147.27 Aligned_cols=248 Identities=22% Similarity=0.235 Sum_probs=134.3
Q ss_pred HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEEe---e---ecCCCccchHHHHHHH----HCCc
Q 015182 26 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWG---G---LVPENAYNASALEALL----NAGV 94 (411)
Q Consensus 26 ~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~----~~g~ 94 (411)
...+.+.||||+.|+. . ......+.+..+.+..+ ++..+++..+. + +.+........+.+.. ..|.
T Consensus 136 ~~~~~a~GiTt~~d~~-~--~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG-G--GFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE-C--CCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc-c--ccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 4456789999999987 2 11234455666555544 33445554432 1 1222222222222221 1232
Q ss_pred eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 95 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
. .. . .+.+..+++++.++++.|++.|+++.+|+.++..+.
T Consensus 213 ~-~~--~-----~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~-------------------------------- 252 (404)
T PF07969_consen 213 P-VH--I-----SGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAID-------------------------------- 252 (404)
T ss_dssp E-EE--E-----TC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHH--------------------------------
T ss_pred c-cc--c-----cccccccchhHHHHHHHHHhcCCeeEEEEcCCchHH--------------------------------
Confidence 1 11 1 344567888899999999999999999998765432
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc-ccCC-CCcceEEcCCCCChh
Q 015182 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-EIPD-GDTRFKCAPPIRDAA 252 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~-~~~~-~~~~~~~~p~lr~~~ 252 (411)
.+++...+. .....+.|+... ..+.++.+++.+ +.++++|++++.... .... .+. -+ ..
T Consensus 253 ~~l~a~~~~-------~~~~~i~h~~~~--~~~~~~~~~~l~--~~~~~~p~~~~~~~~~~~~~~~~~-------~~-~~ 313 (404)
T PF07969_consen 253 EALDAIEAA-------RARGRIEHAELI--DPDDIERMAELG--VTASVQPHFLFSWGGEWYEERLGP-------ER-AR 313 (404)
T ss_dssp HHHHHHHHH-------TCCHEEEEHCBC--CHHHHHHHHHHT--TEEEECCTHHHHETEETHHHHHHH-------HC-GG
T ss_pred hHHHHHHhh-------cccceeeccccC--CHHHHHHHHHhC--CccccChhHhhhccchhhhhhhhh-------HH-HH
Confidence 233333322 111157787754 334455555545 467788866654431 0000 000 00 01
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHH-HH------HHhcCCCHHHHHHHHhH
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SY------GRKYGVTLEQLASWWSE 325 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~-~~------~~~~~l~~~~al~~~T~ 325 (411)
....+...++.|+.++++||+ |... .+||. ++........ .. ..++.+|++|+|+++|.
T Consensus 314 ~~~~~~~~~~~Gv~v~~gsD~-p~~~------~~P~~-------~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~ 379 (404)
T PF07969_consen 314 RIYPIRSLLDAGVRVALGSDA-PVSP------PNPFR-------GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTS 379 (404)
T ss_dssp GBTHHHHHHHCTTEEEE--TT-TTSS------CCHHH-------HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTH
T ss_pred HHhHHHHHHhccCceecCcCC-cccc------cCcch-------hhhhhhccccccccccccccccccCCHHHHHHHHhH
Confidence 113456678889999999996 4321 12331 1111111100 00 01267999999999999
Q ss_pred hHHHHhCC-CCCCcccccCCccEEE
Q 015182 326 RPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 326 n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
|||+.+|+ +++|+|++||.|||||
T Consensus 380 ~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 380 NPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred HHHHHcCCCCCcceECCCCCcCeEC
Confidence 99999999 5569999999999997
No 112
>PRK06886 hypothetical protein; Validated
Probab=99.66 E-value=2e-14 Score=133.06 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=134.0
Q ss_pred HHHHHHHcCCceeEecCCCCCCC--CCCCHHHHHHHHHHHhcCCceEEE-EEe-eecCCCccchHHHHHHHHCCceEEEE
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVG-FWG-GLVPENAYNASALEALLNAGVLGLKS 99 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~ik~ 99 (411)
+..+.+++.|+|.++.+. +..| ....++++.+.++..+....+.+. |.. ++. .++..+-+.+..+. ++.+.-
T Consensus 73 ~~l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~--~~~~~~l~~~al~~-advvGG 148 (329)
T PRK06886 73 QAIELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI--EPTAKKWFDIGSEM-VDMIGG 148 (329)
T ss_pred HHHHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc--CccHHHHHHHHHHh-CCEEeC
Confidence 456678899999999987 5445 445567777777666654433332 111 121 11222234443333 333222
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHH
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~ 179 (411)
. .+.+ ......+.+.++.+++.|+++|++|.+|+.+...... ..++.+.+.
T Consensus 149 i-P~~~-~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~---------------------------~~le~l~~~ 199 (329)
T PRK06886 149 L-PYRD-ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKE---------------------------KETEQLCDK 199 (329)
T ss_pred c-cCCc-CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhH---------------------------HHHHHHHHH
Confidence 1 1110 0111356799999999999999999999987532110 112333333
Q ss_pred HhhhccCCCCCCceEEEEcCCChHH------HHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChh
Q 015182 180 AKDTRTDGPAEGAHLHIVHLSDASS------SLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~h~~~~~~------~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
..+.|+ ..++.+.|+... . ..++++..++.|+.|+ +||.. ++++... ...|.-+...
T Consensus 200 ~~~~Gl-----~grV~~sH~~~L-~~~~~~~~~~~i~~La~agi~Vv--~~P~snl~l~~~~--------~~~p~~rGv~ 263 (329)
T PRK06886 200 TIEHGM-----QGRVVAIHGISI-GAHSKEYRYRLYQKMREADMMVI--ACPMAWIDSNRKE--------DLMPFHNALT 263 (329)
T ss_pred HHHcCC-----CCCEEEEEeccc-cCcChhhHHHHHHHHHHcCCeEE--ECchhhhhhcccc--------ccCcCCCCCC
Confidence 334432 347888887753 2 2346777778887665 45642 3322111 0111112222
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
.+.++++.|+++++|||+.. +||. |.|...+-..+..+. ....-.++.++++++|.|+|+++|
T Consensus 264 ---pv~eL~~aGV~V~lGtDnv~----------D~~~--p~g~~Dmle~~~l~~--~~~~~~~~~~~l~maT~~gAraLg 326 (329)
T PRK06886 264 ---PADEMIPEGITVALGTDNIC----------DYMV--PLCEGDMWQELSLLA--AGCRFYDLDEMVNIASINGRKVLG 326 (329)
T ss_pred ---CHHHHHHCCCeEEEecCCCc----------ccCC--CCCCCCHHHHHHHHH--HHcCCCCHHHHHHHHhhhHHHHhC
Confidence 23345667999999999742 3442 333222211111111 112235799999999999999999
Q ss_pred CC
Q 015182 333 QV 334 (411)
Q Consensus 333 ~~ 334 (411)
++
T Consensus 327 l~ 328 (329)
T PRK06886 327 LE 328 (329)
T ss_pred CC
Confidence 74
No 113
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.65 E-value=7.7e-15 Score=134.22 Aligned_cols=249 Identities=24% Similarity=0.302 Sum_probs=140.7
Q ss_pred eeecccccCCCCCCc------------------cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC
Q 015182 4 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 65 (411)
Q Consensus 4 lID~H~H~~~~~~~~------------------~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (411)
|||+|+|+..+.... ........+.++++||||+.++. +..+.....+.+....+......
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999987542211 22345567788999999999987 33322221233444433333221
Q ss_pred ceEEEEEeeecCCCc--------cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 66 YVDVGFWGGLVPENA--------YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 66 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+++.+..+..+... ...+.+.+..+.|+.++|++..+.. ...+.+.++++++.|+++|+++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 344443322222111 1122233333358999998654321 1147899999999999999999999987
Q ss_pred cccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCC
Q 015182 138 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 217 (411)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~ 217 (411)
..... ..+..+++... .+.++.+.|+... +.+.++..++.|
T Consensus 156 ~~~~~----------------------------~~~~~~~~~~~--------~~~~~~~~H~~~~--~~~~~~~~~~~g- 196 (275)
T cd01292 156 LPDPT----------------------------RALEDLVALLR--------LGGRVVIGHVSHL--DPELLELLKEAG- 196 (275)
T ss_pred cccCc----------------------------cCHHHHHHHHh--------cCCCEEEECCccC--CHHHHHHHHHcC-
Confidence 54210 01233343322 1567889999874 234455555555
Q ss_pred CEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 218 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 218 ~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
+.+++||.+..... +.......+.++++.|..++++||+.+.... ..
T Consensus 197 -~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~----------------~~ 243 (275)
T cd01292 197 -VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLG----------------TD 243 (275)
T ss_pred -CeEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCC----------------CC
Confidence 46677887644321 0011123455667889999999997543110 00
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHH
Q 015182 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+-..+..+. .....+++++++++++|.|||++
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 244 LLALLRLLL-KVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHHHH-HHHhcCCCHHHHHHHHhccccCC
Confidence 000111111 11223489999999999999973
No 114
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.60 E-value=3.6e-13 Score=113.54 Aligned_cols=307 Identities=17% Similarity=0.228 Sum_probs=187.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHH-HHh--cCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD-AAE--KRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 77 (411)
+|+.-|+|+|+++..+-. .-.-....+||.-..-|| |..|++.+..+.-.++. .-+ .+...-+.+| +++
T Consensus 7 i~~~~DmHvHlR~g~ml~-----aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~skttfLMslY--Ls~ 78 (344)
T KOG2902|consen 7 ITQPDDMHVHLRDGDMLH-----AVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTTFLMSLY--LSD 78 (344)
T ss_pred cCCccceeEEeccCCeee-----eeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCccceeEEEEe--ecC
Confidence 578899999999864411 112234678999999999 88888766553332222 222 2222223333 233
Q ss_pred CCccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCC--HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 78 ENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTN--ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 78 ~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+ ..+.+.+..+ .++.|+|.|....+.+.....+ -+.+.-+++...+.|+++.+|-+-+..++..+
T Consensus 79 ~t--tPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~V--------- 147 (344)
T KOG2902|consen 79 KT--TPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHV--------- 147 (344)
T ss_pred CC--CHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCce---------
Confidence 22 1234666665 4678999987654322111112 25677788888999999999988765433111
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+|..-+..++.+.++. +..++.++|+++. +.++.++.++ +..+.+.+.+|||+++..+
T Consensus 148 -----------f~aE~~Flptll~Lhqrf------P~LKivlEHcTt~-dAv~~ve~a~--~~sVaaTvTahHL~Lt~~d 207 (344)
T KOG2902|consen 148 -----------FDAEKIFLPTLLQLHQRF------PQLKIVLEHCTTM-DAVNFVESAK--EGSVAATVTAHHLLLTRND 207 (344)
T ss_pred -----------ecchhhhHHHHHHHHHhC------ccceeHHHhcccH-HHHHHHHhhc--CCceeeEeehheeEEehhh
Confidence 122333455566666654 4778999999998 7888888764 4567888999999998877
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 313 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (411)
+.. .....+.|-.+...++++|.++...|.+ ..+|||.+|+....|.. . ....|+-..-..++.+.+..-++|
T Consensus 208 wqg-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~----~-~~cAGvysqpfA~sy~A~VFde~g 281 (344)
T KOG2902|consen 208 WQG-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKES----S-CGCAGVYSQPFALSYYAKVFDEAG 281 (344)
T ss_pred hcC-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCccccccc----C-CCcceeecccchHHHHHHHHhhhc
Confidence 543 4455567777888899999999888775 57899999998665531 0 011232222233443332222333
Q ss_pred CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDND 361 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 361 (411)
.++.+=..++.++-...++ +++- .-|| ++. +.+|.+|..
T Consensus 282 -aLd~Lk~F~s~fG~~FY~~p~e~~------sS~I-~lK-Ke~~~vP~v 321 (344)
T KOG2902|consen 282 -ALDKLKAFTSFFGPDFYGLPDERN------SSKI-TLK-KEPWKVPDV 321 (344)
T ss_pred -hHHHHhhhHhhcCcceeccccccc------ccce-eee-cCcccCcch
Confidence 3434444556777788787 3332 2343 455 346766643
No 115
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.42 E-value=4.6e-12 Score=115.40 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=76.7
Q ss_pred HHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEE
Q 015182 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 196 (411)
Q Consensus 117 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (411)
++++++.|+++|+++.+|+.+..... +. ..++.+.++ +.+. +
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~----------g~----------------~~i~~~~~~-----------~~~~-i 168 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV----------GM----------------TDIERALDL-----------EPDL-L 168 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC----------Cc----------------hhHHHHHhC-----------CCCE-E
Confidence 99999999999999999998754210 00 012232322 2222 5
Q ss_pred EcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCC
Q 015182 197 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276 (411)
Q Consensus 197 ~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~ 276 (411)
.|+... +.+.++.+++.|+.+ .+||..-+.. +. -.+| +.++++.|+++++|||..+.
T Consensus 169 ~H~~~l--~~~~~~~la~~g~~v--~~~P~sn~~l-------~~---g~~p---------~~~l~~~Gv~v~lGtD~~~~ 225 (263)
T cd01305 169 VHGTHL--TDEDLELVRENGVPV--VLCPRSNLYF-------GV---GIPP---------VAELLKLGIKVLLGTDNVMV 225 (263)
T ss_pred EEcCCC--CHHHHHHHHHcCCcE--EEChhhHHHh-------CC---CCCC---------HHHHHHCCCcEEEECCCCcc
Confidence 676654 224566777777654 4567421110 00 1122 34557789999999996432
Q ss_pred ChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHH
Q 015182 277 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 277 ~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+.. +.| .+.++....... ...++++++++++|.|+|++
T Consensus 226 ~~~------~~~---------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 226 NEP------DMW---------AEMEFLAKYSRL-QGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCC------CHH---------HHHHHHHHHhcc-cccCCHHHHHHHHhhccccC
Confidence 210 011 111111111001 12469999999999999973
No 116
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.20 E-value=1.6e-09 Score=98.52 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
-+++.++..+.-.||||.+|+ +++|.|.+|.+||+.|.|.++ ..++++.++. -.+.. + .+..+|+.+|+
T Consensus 437 E~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP-~~vDps~dye------~v~ka--f-~~A~ytlK~Ge 506 (575)
T COG1229 437 ELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNP-EQVDPSNDYE------KVEKA--F-RKAAYTLKGGE 506 (575)
T ss_pred cccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecCh-hhcCCcccHH------HHHHH--H-hheeEEecCce
Confidence 478999999999999999999 679999999999999999884 4444331211 01111 1 24679999999
Q ss_pred EEEEcCcccCCCCCccc
Q 015182 392 LVYKEGNHAPAACGSPI 408 (411)
Q Consensus 392 ~v~~~g~~~~~~~g~~~ 408 (411)
+|.++|++...+-|+.+
T Consensus 507 IvvkdGeiv~~p~grTy 523 (575)
T COG1229 507 IVVKDGEIVAEPEGRTY 523 (575)
T ss_pred EEEecceEEecccCceE
Confidence 99999999988888753
No 117
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.09 E-value=3.1e-08 Score=89.61 Aligned_cols=241 Identities=19% Similarity=0.175 Sum_probs=125.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc---
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (411)
+||+|+|+..... ..+.....+.+.+.||++++.+.. . .+..+...+.++... ++....++-|...
T Consensus 1 ~~D~H~H~~~~~~--~~~~~~~l~~~~~~gv~~~v~~~~--~-----~~~~~~~~~la~~~~--~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQF--DADRDDVLARAREAGVIKIIVVGT--D-----LKSSKRALELAKKYD--NVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhh--ccCHHHHHHHHHHcCCCEEEEeCC--C-----HHHHHHHHHHHHhCC--CeEEEEeeCcchhhcC
Confidence 6999999975432 123445566677899999998762 1 122333333333222 2222233333221
Q ss_pred --cchHHHHHHHH-CCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 81 --YNASALEALLN-AGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 81 --~~~~~~~~~~~-~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
+.++.+.++++ .++.+| ++.+++...........+.++.+++.|+++|+||.+|+....
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~----------------- 132 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH----------------- 132 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-----------------
Confidence 12445555543 356666 454443211000012346788999999999999999987531
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
..+++++++.+ ..+..+.|.... ..+.++.+.+.|+. .++++...+
T Consensus 133 -----------------~~~~~l~~~~~------~~~~~i~H~~~~--~~~~~~~~~~~g~~--~~~~~~~~~------- 178 (251)
T cd01310 133 -----------------EDVLEILKEYG------PPKRGVFHCFSG--SAEEAKELLDLGFY--ISISGIVTF------- 178 (251)
T ss_pred -----------------HHHHHHHHhcC------CCCCEEEEccCC--CHHHHHHHHHcCCE--EEeeeeecc-------
Confidence 12344555441 123335566543 33455555555653 344432110
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~ 313 (411)
.. ...+.+.++.+. .+.++||+ |...... +. .+ .+....+..++..+. ..+
T Consensus 179 ------------~~---~~~~~~~~~~~~~dril~~TD~-p~~~~~~------~~---~~-~~~~~~~~~~~~~la~~~g 232 (251)
T cd01310 179 ------------KN---ANELREVVKEIPLERLLLETDS-PYLAPVP------FR---GK-RNEPAYVKHVAEKIAELKG 232 (251)
T ss_pred ------------CC---CHHHHHHHHhCChHHEEEcccC-CCCCCCC------CC---CC-CCCChhHHHHHHHHHHHHC
Confidence 00 012233344332 46899996 5432110 00 01 111122333343333 478
Q ss_pred CCHHHHHHHHhHhHHHHhC
Q 015182 314 VTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg 332 (411)
++.+++.+.++.||+++||
T Consensus 233 l~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 233 ISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
No 118
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=99.02 E-value=3e-10 Score=87.33 Aligned_cols=136 Identities=24% Similarity=0.363 Sum_probs=90.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||.|||++.||...++.+.+ |++.|| |+.|.. .+++.+..
T Consensus 5 ~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paP------------------------a~itv~~~ 48 (142)
T PF12890_consen 5 LPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAP------------------------AGITVEDD 48 (142)
T ss_pred ehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCC------------------------cceeeeec
Confidence 599999999999999988887654 899999 777643 01111100
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
|-.++.+ +. +++.......+.+.++. ++++..+..||+++..+.++....| ...-.++
T Consensus 49 ------------~~e~~af--sd---dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~g----e~~q~~g 106 (142)
T PF12890_consen 49 ------------GEEAFAF--SD---DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDG----ELPQFLG 106 (142)
T ss_pred ------------CcceEEE--ec---CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccc----hhhHHhC
Confidence 0012211 11 23344566778888888 8899999999999987776553222 2222222
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 202 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~ 202 (411)
.. .|..+|...+.+.+.+++++ |+..|++|+++.
T Consensus 107 ~~-L~G~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 107 VY-LKGNCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred Cc-CCCcchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 11 22377888888888888876 899999999874
No 119
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=99.01 E-value=9.8e-08 Score=86.37 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=66.9
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+.....+ ++.....+.+...|+++++++.. . ...++...+..+... ++....++-|..
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~~--~-----~~~~~~~~~~~~~~~--~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVGT--D-----LEDFLRALELAEKYP--NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEecC--C-----HHHHHHHHHHHHHCC--CEEEEEEeCcchhhcC
Confidence 69999998643221 14555567778899999998761 1 233444444333222 333333333321
Q ss_pred -ccchHHHHHHHH-CCceEEEE-eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 80 -AYNASALEALLN-AGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 80 -~~~~~~~~~~~~-~g~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
...++++.+.++ .++.+|.- .+++...........+.++..++.|+++|++|.+|+..
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 122344554443 34555532 23321100000002378888899999999999999975
No 120
>PRK10812 putative DNAse; Provisional
Probab=98.95 E-value=4.7e-07 Score=81.97 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=132.4
Q ss_pred ceeecccccCCCCC-CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC--
Q 015182 3 GLIDVHAHLDDPGR-TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-- 79 (411)
Q Consensus 3 GlID~H~H~~~~~~-~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (411)
.+||+|+|+..+.+ ...++.......+...||..++..+ .+.+..+...+.++....+.. ..|+-|..
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~--~~GiHP~~~~ 72 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVF--SCGVHPLNQD 72 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEE--EEEeCCCCCC
Confidence 37999999974322 2234556667788899999888765 234555555555543222322 22333321
Q ss_pred -ccchHHHHHHHH-CCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 80 -AYNASALEALLN-AGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 80 -~~~~~~~~~~~~-~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
...++.+.++.+ ..+.+| .+.++|.........-.+.+++.++.|.++++||.+|+.+..
T Consensus 73 ~~~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~----------------- 135 (265)
T PRK10812 73 EPYDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR----------------- 135 (265)
T ss_pred ChhHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-----------------
Confidence 223555665554 345555 555555311111111235677888899999999999987632
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
..++++.++.+ .+ ..+. +.|+.+ .+.+.++.+.+.|..+.. +....+
T Consensus 136 -----------------~~~l~iL~~~~--~~--~~~~-v~H~fs--G~~~~a~~~~~~G~~is~--~g~~t~------- 182 (265)
T PRK10812 136 -----------------ADTLAILREEK--VT--DCGG-VLHCFT--EDRETAGKLLDLGFYISF--SGIVTF------- 182 (265)
T ss_pred -----------------HHHHHHHHhhc--CC--CCCE-EEEeec--CCHHHHHHHHHCCCEEEE--Ceeeec-------
Confidence 12223333220 00 1123 457765 366777777777764443 211000
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
+ +...+++.++..- ...+.||. |+... .|+..-.+. + ..+....+.+ .-.+
T Consensus 183 ------------~---~~~~~~~~~~~ipldrlLlETD~-P~~~p------~~~~g~~n~-P---~~i~~v~~~ia~l~g 236 (265)
T PRK10812 183 ------------R---NAEQLRDAARYVPLDRLLVETDS-PYLAP------VPHRGKENQ-P---AMVRDVAEYMAVLKG 236 (265)
T ss_pred ------------C---ccHHHHHHHHhCChhhEEEecCC-CCCCC------cCCCCCCCC-c---HHHHHHHHHHHHHhC
Confidence 0 1233444555442 35788994 55321 011100000 1 1223323333 2358
Q ss_pred CCHHHHHHHHhHhHHHHhCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~ 333 (411)
++.+++.+.++.|+.++|++
T Consensus 237 ~~~eei~~~~~~N~~~lf~~ 256 (265)
T PRK10812 237 VSVEELAQVTTDNFARLFHI 256 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998
No 121
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.70 E-value=3.9e-06 Score=77.72 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015182 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 193 (411)
Q Consensus 114 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 193 (411)
.+.+++.++.|+++|+||.+|+.+... +...+++..++.+. ...+
T Consensus 135 ~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~g~----~~~~ 179 (293)
T cd00530 135 EKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEEGV----DPSK 179 (293)
T ss_pred HHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHcCC----Chhh
Confidence 457889999999999999999976310 01122333333211 1234
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEcC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSS 271 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~--~~~s 271 (411)
+.+.|+... .+.+.++.+.+.|..+..+.... +.. ...++ .....+.++++++.|... .++|
T Consensus 180 ~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~--~~~-----------~~~~~--~~~~~~~l~~~~~~~~~d~ill~T 243 (293)
T cd00530 180 VVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGK--DKI-----------FGYPS--DETRADAVKALIDEGYGDRLLLSH 243 (293)
T ss_pred eEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCc--ccc-----------cCCCC--HHHHHHHHHHHHHCCCcCCEEEeC
Confidence 578899743 35677777777786444321110 000 00011 123355677888888754 8999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
|. |..... ++ ..+-.+....+..+...+...+++.+++.++++.||+++|
T Consensus 244 D~-p~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 244 DV-FRKSYL------EK---RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred Cc-Cchhhh------hh---ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 94 543211 01 0111122223333344456789999999999999999975
No 122
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.64 E-value=1.2e-05 Score=72.68 Aligned_cols=244 Identities=18% Similarity=0.137 Sum_probs=125.5
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC--
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-- 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (411)
+.+||+|+|+.... ..++.......+...||+.++.++ .+++..+...+.++....+ ....|+-|..
T Consensus 3 ~~~iD~HcHl~~~~--~~~~~~~~l~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v--~~~~GiHP~~~~ 71 (258)
T PRK11449 3 CRFIDTHCHFDFPP--FSGDEEASLQRAAQAGVGKIIVPA-------TEAENFARVLALAERYQPL--YAALGLHPGMLE 71 (258)
T ss_pred ceEEEeccCCCChh--hccCHHHHHHHHHHCCCCEEEEee-------CCHHHHHHHHHHHHhCCCE--EEEEeeCcCccc
Confidence 56899999996432 233444556667788999998776 2344555555554432222 2222332311
Q ss_pred ---ccchHHHHHHHH-C--CceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcC
Q 015182 80 ---AYNASALEALLN-A--GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 152 (411)
Q Consensus 80 ---~~~~~~~~~~~~-~--g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~ 152 (411)
.+.++.+.++++ . .+.+| -+.+++.........-.+.+.+.++.|.++++||.+|+.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~------------- 138 (258)
T PRK11449 72 KHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH------------- 138 (258)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc-------------
Confidence 123455555443 1 34444 223333210000011236778888999999999999998632
Q ss_pred CccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 153 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
..++++.++.+. ..+ -+.|+.+. +.+.++.+.+.|..+. +++...+
T Consensus 139 ---------------------~~~~~il~~~~~-----~~~-~i~H~fsG--~~~~a~~~l~~G~~iS--~~g~it~--- 184 (258)
T PRK11449 139 ---------------------DKLAMHLKRHDL-----PRT-GVVHGFSG--SLQQAERFVQLGYKIG--VGGTITY--- 184 (258)
T ss_pred ---------------------HHHHHHHHhcCC-----CCC-eEEEcCCC--CHHHHHHHHHCCCEEE--eCccccc---
Confidence 122333333210 112 26687663 6777777777776433 3322111
Q ss_pred cccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-H
Q 015182 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G 309 (411)
Q Consensus 233 ~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 309 (411)
+ +...+++.++. . -.+.+.||. |+-. ..++. |....-..+...+.. .
T Consensus 185 -------------~------~~~~~~~~~~~ipldriL~ETD~-P~l~------p~~~~----~~~n~p~~~~~~~~~ia 234 (258)
T PRK11449 185 -------------P------RASKTRDVIAKLPLASLLLETDA-PDMP------LNGFQ----GQPNRPEQAARVFDVLC 234 (258)
T ss_pred -------------c------CcHHHHHHHHhCChhhEEEecCC-CCCC------CCCCC----CCCCCChHHHHHHHHHH
Confidence 0 01122333322 1 134788994 5421 01111 100001122233332 2
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.-.+++++++.+..+.|..++|++
T Consensus 235 ~l~~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 235 ELRPEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhCc
Confidence 345799999999999999999875
No 123
>PRK10425 DNase TatD; Provisional
Probab=98.64 E-value=1.2e-05 Score=72.55 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=68.5
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+.... ..++.....+.+...||..++..+ .+++.+....+.++....+. ...|+-|..
T Consensus 1 ~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~~~-------~~~~~~~~~~~l~~~~~~v~--~~~GiHP~~~~~~ 69 (258)
T PRK10425 1 MFDIGVNLTSSQ--FAKDRDDVVARAFAAGVNGMLITG-------TNLRESQQAQKLARQYPSCW--STAGVHPHDSSQW 69 (258)
T ss_pred CEEeeeCcCChh--hhccHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHhCCCEE--EEEEeCcCccccC
Confidence 699999996432 234555667778889999988765 22445555555544322222 222333321
Q ss_pred -ccchHHHHHHHHC-CceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 80 -AYNASALEALLNA-GVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 80 -~~~~~~~~~~~~~-g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+.++.+.++.+. .+.+|. +.++|.........-.+.+++-++.|.++++||.+|+.+
T Consensus 70 ~~~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 70 QAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred CHHHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 2234455555432 333332 334442100000011256778888999999999999985
No 124
>PRK09875 putative hydrolase; Provisional
Probab=98.61 E-value=1.7e-05 Score=72.44 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=137.7
Q ss_pred ceeecccccCCC--CC--------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDP--GR--------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~--~~--------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
|+..+|=|+... +. ...+......+...+.|+.|++|+. +.. .-.+++.+++..+. ..+++...
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T-~~g-~GRd~~~l~~is~~----tgv~Iv~~ 80 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT-NRY-MGRNAQFMLDVMRE----TGINVVAC 80 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecC-CCc-cCcCHHHHHHHHHH----hCCcEEEc
Confidence 788999998532 11 1112233445566689999999986 222 22456666655432 22444322
Q ss_pred eeecCC--Cc-----cchHHHHHH----HHCCc-------eEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 73 GGLVPE--NA-----YNASALEAL----LNAGV-------LGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 73 ~~~~~~--~~-----~~~~~~~~~----~~~g~-------~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
-|+... .+ ...+++.++ +..|+ ..| |+..++. ...-...+.++++.+.+.+.|.||.+
T Consensus 81 TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~---~it~~E~kvl~Aaa~a~~~TG~pi~~ 157 (292)
T PRK09875 81 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEG---KITPLEEKVFIAAALAHNQTGRPIST 157 (292)
T ss_pred CcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCC---CCCHHHHHHHHHHHHHHHHHCCcEEE
Confidence 121110 00 011222221 12222 224 4433322 11122335677778888899999999
Q ss_pred ecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHh
Q 015182 134 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 213 (411)
Q Consensus 134 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~ 213 (411)
|+..... +. +.++++.+.|. .-.++.+.|+... .+.+.+++..
T Consensus 158 Ht~~~~~-------------------------------g~-e~l~il~e~Gv----d~~rvvi~H~d~~-~d~~~~~~l~ 200 (292)
T PRK09875 158 HTSFSTM-------------------------------GL-EQLALLQAHGV----DLSRVTVGHCDLK-DNLDNILKMI 200 (292)
T ss_pred cCCCccc-------------------------------hH-HHHHHHHHcCc----CcceEEEeCCCCC-CCHHHHHHHH
Confidence 9654221 11 12444444411 1247899999765 5777888887
Q ss_pred HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC--CccEEcCCCCCCChhhhhcccCCcccc
Q 015182 214 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKA 291 (411)
Q Consensus 214 ~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G--~~~~~~sD~~p~~~~~k~~~~~~~~~~ 291 (411)
++|+.+-.+. + +. ....| .......+...++.| -.+.+++|...... + .
T Consensus 201 ~~G~~l~fD~-~-------------g~-~~~~p---d~~r~~~i~~L~~~Gy~drilLS~D~~~~~~---------~-~- 251 (292)
T PRK09875 201 DLGAYVQFDT-I-------------GK-NSYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSH---------L-K- 251 (292)
T ss_pred HcCCEEEecc-C-------------CC-cccCC---HHHHHHHHHHHHhcCCCCeEEEeCCCCCccc---------c-c-
Confidence 8887554321 0 10 01112 122234555556667 35678999643211 1 1
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.|-.|..+.+..+...+.+.|++-+++=++.-.||+++|+
T Consensus 252 ~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 252 ANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred ccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 22335566666666666678899999999999999999874
No 125
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=98.60 E-value=1.9e-05 Score=70.46 Aligned_cols=243 Identities=18% Similarity=0.142 Sum_probs=128.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeec-CCCc
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV-PENA 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 80 (411)
|||+|+|+... ...++.......+...||+-+...+ .+.+.++...+.++... +..++++.... ....
T Consensus 3 liDtH~HL~~~--~~~~d~~~vi~~a~~~gv~~~~~~g-------~~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~ 73 (256)
T COG0084 3 LIDTHCHLDFE--EFDEDRDEVIARAREAGVKKMVVVG-------TDLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE 73 (256)
T ss_pred cEEeeeCCCch--hhcCCHHHHHHHHHHcCCcEEEEee-------cCHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence 79999999752 2344555667778899999998776 22344444444444322 22233332110 0112
Q ss_pred cchHHHHHHHH--CCceEEEE-eccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 81 YNASALEALLN--AGVLGLKS-FMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 81 ~~~~~~~~~~~--~g~~~ik~-~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
+.++.+.+++. ..+.+|.- .++|.-... ....-.+.+++-++.|+++++|+.+|+.+..
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~----------------- 136 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH----------------- 136 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH-----------------
Confidence 34556666664 34544432 233321000 0000135677788899999999999998732
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
+.++++.++.+ ...--+.|+.+ .+.+.++++-+.|..+. ++..-.|-.
T Consensus 137 -----------------~d~~~iL~~~~------~~~~gi~HcFs--Gs~e~a~~~~d~G~yis--isG~itfk~----- 184 (256)
T COG0084 137 -----------------EDTLEILKEEG------APVGGVLHCFS--GSAEEARKLLDLGFYIS--ISGIVTFKN----- 184 (256)
T ss_pred -----------------HHHHHHHHhcC------CCCCEEEEccC--CCHHHHHHHHHcCeEEE--ECceeecCC-----
Confidence 23344444431 11223678887 47888888888785443 333221111
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC---ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hhc
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY 312 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~---~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 312 (411)
...+++.++. + ...+=|| +|+-.. .||..-.+ -|. .+......+ .-.
T Consensus 185 -----------------a~~~~ev~~~-iPldrLL~ETD-sPyl~P------~p~rGkrN-eP~---~v~~v~~~iAelk 235 (256)
T COG0084 185 -----------------AEKLREVARE-LPLDRLLLETD-APYLAP------VPYRGKRN-EPA---YVRHVAEKLAELK 235 (256)
T ss_pred -----------------cHHHHHHHHh-CCHhHeEeccC-CCCCCC------cCCCCCCC-Cch---HHHHHHHHHHHHh
Confidence 1122222221 1 1356688 455321 11211000 011 222222222 234
Q ss_pred CCCHHHHHHHHhHhHHHHhCC
Q 015182 313 GVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~ 333 (411)
+++++++.+..|.|.-++|++
T Consensus 236 ~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 236 GISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999874
No 126
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=98.45 E-value=3.6e-05 Score=69.64 Aligned_cols=244 Identities=20% Similarity=0.178 Sum_probs=121.4
Q ss_pred eecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC-----
Q 015182 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN----- 79 (411)
Q Consensus 5 ID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 79 (411)
||+|+|+... ...++.....+.+...|++.++.+.. +.+.+....+.++... ..+....|+-|..
T Consensus 1 iD~H~Hl~~~--~~~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~~~~~~~~~-~~v~~~~GiHP~~~~~~~ 70 (255)
T PF01026_consen 1 IDAHCHLDSP--RFEEDRPEVLERAREAGVSAIIIVST-------DPEDWERVLELASQYP-DRVYPALGIHPWEAHEVN 70 (255)
T ss_dssp EEEEE-TTSG--GGTTTHHHHHHHHHHTTEEEEEEEES-------SHHHHHHHHHHHHHTT-TEEEEEE---GGGGGGHS
T ss_pred CcCccCCCCh--hhCcCHHHHHHHHHHcCCCEEEEcCC-------CHHHhHHHHHHHhcCC-CeEEEEecCCcchhhhhh
Confidence 8999999762 12344556678889999999987651 2344444444443221 1222223333321
Q ss_pred ccchHHHHHH--HH-CCceEE-EEeccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 80 AYNASALEAL--LN-AGVLGL-KSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 80 ~~~~~~~~~~--~~-~g~~~i-k~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+.++.+.++ .. ..+.+| -+.+++..... ....-.+.+++.++.|.++++||.+|+.+.
T Consensus 71 ~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a---------------- 134 (255)
T PF01026_consen 71 EEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKA---------------- 134 (255)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESH----------------
T ss_pred HHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCc----------------
Confidence 1223455555 32 344444 33344421000 001123567788899999999999999872
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+++++.++.+ . .+.+ -+.|..+. +.+.++.+.+.|+ ..++++.-.+.
T Consensus 135 ------------------~~~~l~il~~~~--~--~~~~-~i~H~f~g--~~~~~~~~~~~g~--~~S~~~~~~~~---- 183 (255)
T PF01026_consen 135 ------------------HEELLEILKEYG--P--PNLR-VIFHCFSG--SPEEAKKFLDLGC--YFSFSGAITFK---- 183 (255)
T ss_dssp ------------------HHHHHHHHHHTT--G--GTSE-EEETT--S---HHHHHHHHHTTE--EEEEEGGGGST----
T ss_pred ------------------HHHHHHHHHhcc--c--ccee-EEEecCCC--CHHHHHHHHhcCc--eEEeccccccc----
Confidence 223455555541 0 0223 46688664 6666777666664 44444432211
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
.......+...+. .-...+-|| +|+... .++. |....-..+....+.+ .-.+
T Consensus 184 ---------------~~~~~~~~~~~ip-~drillETD-~P~~~~------~~~~----~~~~~p~~i~~~~~~la~~~~ 236 (255)
T PF01026_consen 184 ---------------NSKKVRELIKAIP-LDRILLETD-APYLAP------DPYR----GKPNEPSNIPKVAQALAEIKG 236 (255)
T ss_dssp ---------------TSHHHHHHHHHS--GGGEEEE-B-TTSSEC------TTST----TSE--GGGHHHHHHHHHHHHT
T ss_pred ---------------ccHHHHHHHhcCC-hhhEEEcCC-CCcCCc------cccC----CCCCChHHHHHHHHHHHHHcC
Confidence 0011122222221 123467899 454321 1111 1011111233333332 3368
Q ss_pred CCHHHHHHHHhHhHHHHhC
Q 015182 314 VTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg 332 (411)
++++++.+....|..++||
T Consensus 237 ~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 237 ISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp STHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
No 127
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=98.44 E-value=5.8e-05 Score=70.99 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+++..+++.|+++|+++.+|+.+..... .+..+++ .. |
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~-----------------------------~~~~a~~---~~-------g 210 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPE-----------------------------SVRDALD---LL-------G 210 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHH-----------------------------HHHHHHH---Hc-------C
Confidence 3779999999999999999999997643211 1112222 11 1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
. ..+.|+....++.+.++.++++|+ .+++||..-+.. +. .+. .....+.++++.|+++++||
T Consensus 211 ~-~~i~H~~~l~~~~~~~~~l~~~gi--~v~~~P~sn~~l-------~~----~~~----~~~~p~~~l~~~Gv~v~lgT 272 (325)
T cd01320 211 A-ERIGHGIRAIEDPELVKRLAERNI--PLEVCPTSNVQT-------GA----VKS----LAEHPLRELLDAGVKVTINT 272 (325)
T ss_pred C-cccchhhccCccHHHHHHHHHcCC--eEEECCCccccc-------cc----cCC----cccChHHHHHHCCCEEEECC
Confidence 1 135565543012356777777775 556788532110 00 000 01223456678899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|..+... .+ +...+..+ ...++++++ +..+|.|+++...+
T Consensus 273 D~~~~~~----------------~~-----~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~ 313 (325)
T cd01320 273 DDPTVFG----------------TY-----LTDEYELLAEAFGLTEEE-LKKLARNAVEASFL 313 (325)
T ss_pred CCCcccC----------------CC-----HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 9633211 01 11112222 345899999 45588999999887
No 128
>PRK09358 adenosine deaminase; Provisional
Probab=98.31 E-value=0.00019 Score=67.91 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+.+..+++.|+++|+++.+|+.+..... .+...++. . |
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~-----------------------------~~~~al~~---l-------g 219 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGGPE-----------------------------SIWEALDE---L-------G 219 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCchh-----------------------------HHHHHHHH---c-------C
Confidence 4678999999999999999999998632100 11122221 1 1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.. .+.|+....++.++++.++++|+ .+++||..-... + ..+.+ ....+.++++.|+++++||
T Consensus 220 ~~-ri~Hg~~l~~~~~~~~~l~~~gi--~v~~cP~Sn~~l-------~----~~~~~----~~~pi~~l~~~Gv~v~lgT 281 (340)
T PRK09358 220 AE-RIGHGVRAIEDPALMARLADRRI--PLEVCPTSNVQT-------G----AVPSL----AEHPLKTLLDAGVRVTINT 281 (340)
T ss_pred Cc-ccchhhhhccCHHHHHHHHHcCC--eEEECCCccccc-------c----ccCCc----ccChHHHHHHCCCEEEECC
Confidence 11 24565532013356777777775 556788632111 0 00000 1123456678899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|...... .+ + ...+.......+++++++ ..++.|+.+.-.+
T Consensus 282 D~~~~~~----------------~~-l---~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~ 322 (340)
T PRK09358 282 DDPLVFG----------------TT-L---TEEYEALAEAFGLSDEDL-AQLARNALEAAFL 322 (340)
T ss_pred CCCcccC----------------CC-H---HHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence 9632211 01 1 111111223358999995 6668999988776
No 129
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=2.2e-06 Score=74.39 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=54.4
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
....+-|++-|++.+|.-||.+||+ ++||++..|.+||||++|.+ -.|..||
T Consensus 344 ~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~---------------------------l~V~aT~ 396 (407)
T KOG3892|consen 344 LKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS---------------------------LHVQATY 396 (407)
T ss_pred HHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccc---------------------------eEEEEEE
Confidence 3456899999999999999999999 88999999999999999932 2589999
Q ss_pred ECCEEEEEc
Q 015182 388 SRGNLVYKE 396 (411)
Q Consensus 388 ~~G~~v~~~ 396 (411)
+.|+.|++.
T Consensus 397 isG~~V~~a 405 (407)
T KOG3892|consen 397 ISGELVWQA 405 (407)
T ss_pred EccEEEEec
Confidence 999999974
No 130
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=98.27 E-value=0.00015 Score=68.06 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+.+.++++.|+++|+++.+|+.+..... .+...+. +. |
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~-----------------------------~~~~~~~---~~-------g 209 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAGELGGPE-----------------------------SVREALD---DL-------G 209 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecCCCCChH-----------------------------HHHHHHH---Hc-------C
Confidence 4578999999999999999999998642100 0111111 11 2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.. .+.|+....++.+.++.++++|+ ..++||..-... + ..+. .....+.++++.|+++++||
T Consensus 210 ~~-ri~Hg~~l~~~~~~i~~l~~~gi--~v~~cP~Sn~~l-------~----~~~~----~~~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 210 AT-RIGHGVRALEDPELLKRLAQENI--TLEVCPTSNVAL-------G----VVKS----LAEHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred ch-hcchhhhhccCHHHHHHHHHcCc--eEEECCcccccc-------c----ccCC----cccChHHHHHHCCCEEEECC
Confidence 21 25565432023356777777775 556788542211 0 0000 01223456688899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|..... +.+ + ...+.......++++++ +..+|.|+++....
T Consensus 272 D~~~~~----------------~~~-l---~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~ 312 (324)
T TIGR01430 272 DDPAYF----------------GSY-L---TEEYEIAAKHAGLTEEE-LKQLARNALEGSFL 312 (324)
T ss_pred CCCccc----------------CCC-H---HHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 963221 111 1 11111123346899999 78999999999887
No 131
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=98.23 E-value=0.00042 Score=58.91 Aligned_cols=236 Identities=19% Similarity=0.244 Sum_probs=124.8
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh-------cCCceEEEEEeeec
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-------KRIYVDVGFWGGLV 76 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 76 (411)
+||+|+|+..-+++ -...+..+||-+++....+.-| ..+.+.+....++.- ....++.....|+-
T Consensus 2 ~iD~HiH~d~r~~e-------DlekMa~sGI~~Vit~AhdP~~-~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGFE-------DLEKMALSGIREVITLAHDPYP-MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccHH-------HHHHHHHhChhhhhhcccCCCC-cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 69999999754432 2344566777777665422222 245555554332211 11223443333433
Q ss_pred CC----Cc-cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccC
Q 015182 77 PE----NA-YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 150 (411)
Q Consensus 77 ~~----~~-~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 150 (411)
|. +. ..+.++.++.. .++.+|.- ++.. ..+--..+.+++-++.|+++++|+.+|.....-.
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGE-iGLe---~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~--------- 140 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGE-IGLE---EATDEEKEVFREQLELARELDVPVIVHTPRRNKK--------- 140 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeee-cccc---cCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcch---------
Confidence 32 21 22344444443 45655532 1111 1111133567788889999999999998653210
Q ss_pred cCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHH-HHHHHhHCCCCEEEEccccccc
Q 015182 151 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLD-LLMEAKTNGDSITVETCPHYLA 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~-~i~~~~~~g~~i~~~~~p~~l~ 229 (411)
.++.++++++...++. ...+.+.|++. +.++ ++ +.+..+..+++|.-+
T Consensus 141 --------------------e~t~~ildi~~~~~l~----~~lvvIDH~N~--etv~~vl----d~e~~vGlTvqPgKl- 189 (254)
T COG1099 141 --------------------EATSKILDILIESGLK----PSLVVIDHVNE--ETVDEVL----DEEFYVGLTVQPGKL- 189 (254)
T ss_pred --------------------hHHHHHHHHHHHcCCC----hhheehhcccH--HHHHHHH----hccceEEEEecCCcC-
Confidence 2355667777655321 44577889875 3554 33 335556666777321
Q ss_pred ccccccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH
Q 015182 230 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 307 (411)
Q Consensus 230 ~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~ 307 (411)
+.++. .+-+++ | ....+.||...... +++ .++...-
T Consensus 190 --------------------t~~eA---veIV~ey~~~r~ilnSD~~s~~s-------d~l------------avprtal 227 (254)
T COG1099 190 --------------------TVEEA---VEIVREYGAERIILNSDAGSAAS-------DPL------------AVPRTAL 227 (254)
T ss_pred --------------------CHHHH---HHHHHHhCcceEEEecccccccc-------cch------------hhhHHHH
Confidence 11111 122222 5 34567788432111 121 2233222
Q ss_pred HHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 308 YGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 308 ~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+...|++-+++-+.+-.|+-+++|+
T Consensus 228 ~m~~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 228 EMEERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCc
Confidence 34567999999999999999888875
No 132
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=98.20 E-value=8.6e-07 Score=62.45 Aligned_cols=36 Identities=47% Similarity=0.796 Sum_probs=23.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeE
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 37 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv 37 (411)
+|||||+|+|+..+.... .......+.++++|||||
T Consensus 33 ~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 33 MPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred eCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 699999999987432221 122456677889999997
No 133
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.97 E-value=0.00013 Score=67.27 Aligned_cols=269 Identities=19% Similarity=0.204 Sum_probs=128.5
Q ss_pred ceeecccccCCC--CC--------C----ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDP--GR--------T----EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~--~~--------~----~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+..+|=|+... +. . ..+......+.+-+.|+.|++|+. ... .-.+++.+++..+...-+....
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~~g-~GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-PIG-LGRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---SGG-GTB-HHHHHHHHHHHT-EEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-Ccc-cCcCHHHHHHHHHHhCCeEEEe
Confidence 788899998532 11 1 112223355566789999999986 221 2245666665543221111112
Q ss_pred EEEEeeecCCC---ccchHHHHHH----HHCCc-------eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 69 VGFWGGLVPEN---AYNASALEAL----LNAGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 69 ~~~~~~~~~~~---~~~~~~~~~~----~~~g~-------~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++|....... ....+++.++ +..|+ ..||...++. .+.-.....++++....++.|++|++|
T Consensus 85 TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~---~it~~E~k~lrAaa~A~~~TG~pI~~H 161 (308)
T PF02126_consen 85 TGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSN---PITPLEEKVLRAAARAHKETGAPISTH 161 (308)
T ss_dssp EEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTT---BCEHHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccC---CCCHHHHHHHHHHHHHHHHhCCeEEEc
Confidence 23332111000 0112333332 22343 2466544332 111122346777777778899999999
Q ss_pred cCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhH
Q 015182 135 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 214 (411)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~ 214 (411)
+...... -.+.+++..+.|. .-.++.++|+... .+.+.++++.+
T Consensus 162 ~~~g~~~-------------------------------~~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~~la~ 205 (308)
T PF02126_consen 162 TGRGTRM-------------------------------GLEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHRELAD 205 (308)
T ss_dssp ESTTGTC-------------------------------HHHHHHHHHHTT------GGGEEETSGGGS-T-HHHHHHHHH
T ss_pred CCCCCcC-------------------------------HHHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHHHHHh
Confidence 9764310 1122333444321 1347899999866 68888888878
Q ss_pred CCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccC
Q 015182 215 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAW 292 (411)
Q Consensus 215 ~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~ 292 (411)
+|+.+..+.--+.++ .. ..+....+ ++ +....+.+..++++|- .+.+|.|-.-... ..+
T Consensus 206 ~G~~l~~D~~g~~~~-g~----~~~~~~~~-~~--d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~-----------~~~ 266 (308)
T PF02126_consen 206 RGVYLEFDTIGREFS-GK----DKNPRVGY-PP--DEERIELLKELIEEGYADQILLSHDIGRKSR-----------LYR 266 (308)
T ss_dssp TT-EEEETTTT-B-T-TT----TTCHSCTT-S---HHHHHHHHHHHHHTTTGGGEEE-HHHESEEG-----------SSS
T ss_pred cCCEEEecCCccccc-Cc----ccCccCCC-CC--HHHHHHHHHHHHHcCCcCcEEEecccccccc-----------ccc
Confidence 887655432211100 00 00000001 11 2233456667777876 4578888432100 112
Q ss_pred CCCchh--hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 293 GGISSL--QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 293 ~g~~~~--~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
.|..+. .+.+..+.-.+.+.|++-+++=++...||+|+|
T Consensus 267 ~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 267 YGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp CCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 222221 122222333456789999999999999999987
No 134
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.59 E-value=0.0085 Score=53.84 Aligned_cols=267 Identities=17% Similarity=0.165 Sum_probs=128.0
Q ss_pred ceeecccccCCCCC----Ccc----------CChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDPGR----TEW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~~~----~~~----------~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+..+|=|+....+ ..+ ..+....+...+.|+.||+|+. +..-+ .+...+.+..++...+.-.-
T Consensus 17 GvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T-~~~~G-Rdv~~m~~vs~atglnIV~~ 94 (316)
T COG1735 17 GVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDAT-NIGIG-RDVLKMRRVAEATGLNIVAA 94 (316)
T ss_pred cceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCC-ccccC-cCHHHHHHHHHHhCCcEEEe
Confidence 77888888853311 111 1122344556789999999987 33222 45556665543322111111
Q ss_pred EEEEeeecCCCc---cchHHHHHH----HHCCc-------eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 69 VGFWGGLVPENA---YNASALEAL----LNAGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 69 ~~~~~~~~~~~~---~~~~~~~~~----~~~g~-------~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++|....-... -.++++.++ ++.|. .-||..-++ +++.......|+++.+..++-|.|+.+|
T Consensus 95 TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~---~~iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 95 TGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGS---PAITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred ccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceeeeccCc---ccCCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 122211110000 012233332 23342 234432222 2222223345667777777899999999
Q ss_pred cCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-ChHHHHHHHHHHh
Q 015182 135 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAK 213 (411)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~-~~~~~~~~i~~~~ 213 (411)
...-.. ++ +.+++..+.+ ..-.++.++|+. +. ++..-.+.++
T Consensus 172 t~~gt~-------------------------------g~-eq~~il~~eg----vdl~~v~igH~d~n~-dd~~y~~~l~ 214 (316)
T COG1735 172 TPAGTM-------------------------------GL-EQLRILAEEG----VDLRKVSIGHMDPNT-DDVYYQKKLA 214 (316)
T ss_pred ccchhh-------------------------------hH-HHHHHHHHcC----CChhHeeEeccCCCC-ChHHHHHHHH
Confidence 876321 11 1223333321 113468899998 66 7888888888
Q ss_pred HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEcCCCCCCChhhhhcccCCcccc
Q 015182 214 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSSDHSPTVPELKLLDEGNFLKA 291 (411)
Q Consensus 214 ~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~--~~~sD~~p~~~~~k~~~~~~~~~~ 291 (411)
.+|..+..+ .- | ..++.| +......+.+.+++|..+ .+|-|.+......... ....
T Consensus 215 ~~Ga~l~fD---------~i-----G-~d~y~p---d~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~---~~~~- 272 (316)
T COG1735 215 DRGAFLEFD---------RI-----G-KDKYYP---DEDRIAPLLELVARGYADLILLSHDDICLSDDVFLK---SMLK- 272 (316)
T ss_pred hcCceEEec---------cc-----C-ccccCc---HHHhhhhHHHHHHhhHhhheecccchhhhhhhHHHH---hhhh-
Confidence 888644322 10 1 111222 122234455556666532 3441322221111100 0000
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
..|-.+....+..+.-.+++.|++-+++=++.--||+++|..
T Consensus 273 ~~~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 273 ANGGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred hcCCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 011122222222333345788999777777777999999875
No 135
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.49 E-value=0.017 Score=52.55 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=68.3
Q ss_pred ceeecccccCCCCCC----------ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDPGRT----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~~~~----------~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
|.||+|+|+..+... +.-++..-...+-..||+..+-+. ......++ ..+.+..+ .. ..+. ++.
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq-~~~~~~~n-~~~~~~~~--~~-~r~~-g~~ 74 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQ-ASIYGADN-SNLLDALA--SN-GKAR-GGA 74 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeC-ccccCCch-HHHHHHHh--hC-CCeE-EEE
Confidence 689999999755321 112222233444578988777554 11111122 22222221 11 1221 111
Q ss_pred eeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 73 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+.+.. ...+.++++.+.|+.|+|+..... +. .+.+.+..+++.+.++|+++.+|+..
T Consensus 75 -~~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~---~~--~~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 75 -TVDPRT-TTDAELKEMHDAGVRGVRFNFLFG---GV--DNKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred -EECCCC-CCHHHHHHHHHCCCeEEEEecccC---CC--CCHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 121222 123566777778999999864332 22 27788899999999999999999864
No 136
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=97.41 E-value=0.00016 Score=46.57 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.4
Q ss_pred eEEEEEEECCEEEEEcCcccCCCCCccccC
Q 015182 381 GKVLATISRGNLVYKEGNHAPAACGSPILA 410 (411)
Q Consensus 381 ~~v~~ti~~G~~v~~~g~~~~~~~g~~~~~ 410 (411)
..+.+|||||++|+++|+++...+|+.||.
T Consensus 18 ~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr 47 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVEDGEVTGARPGRVLRR 47 (48)
T ss_dssp BSEEEEEETTEEEECTTEESSS----B---
T ss_pred CCEEEEEECCEEEEECCeECCCCCCeEecC
Confidence 358999999999999999999999999986
No 137
>PTZ00124 adenosine deaminase; Provisional
Probab=96.89 E-value=0.18 Score=47.90 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
..+..+++.|++.|+++.+|+.+..... . . ..+...+.... .-
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~-------------~----------~---~~v~~ai~~l~-----------~~ 248 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLP-------------N----------L---NTLYSAIQVLK-----------VK 248 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCC-------------c----------c---hhHHHHHHHhC-----------CC
Confidence 4578999999999999999997631000 0 0 00111221111 11
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 274 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~ 274 (411)
+|.|.....++.++++..+++++ ..++||..-... ...+. .....+..++++|++++|+||..
T Consensus 249 RIGHG~~~~~d~~l~~~l~~~~I--~lEvCPtSN~~~-----------~~v~~----~~~HPi~~l~~~Gv~v~InTDDp 311 (362)
T PTZ00124 249 RIGHGIRVAESQELIDMVKEKDI--LLEVCPISNVLL-----------NNAKS----MDTHPIRKLYDAGVKVSVNSDDP 311 (362)
T ss_pred ccccccccCCCHHHHHHHHHcCC--eEEECCcchhhh-----------hcCCc----hhhHHHHHHHHCCCcEEEeCCCc
Confidence 34554432134567788877774 678899643221 11111 12356777888999999999963
Q ss_pred CCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 275 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 275 p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
... +. .+..-+.. ....+++.+++.++ +.|+.+.-.+
T Consensus 312 ~~~----------------~t-----~l~~Ey~~~~~~~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 312 GMF----------------LT-----NINDDYEELYTHLNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred ccc----------------CC-----ChhHHHHHHHHHcCCCHHHHHHH-HHHHHHHhcC
Confidence 221 11 11111222 23568999888877 6667666555
No 138
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=96.78 E-value=0.074 Score=48.28 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=95.2
Q ss_pred chHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 82 NASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 82 ~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
..+++.+.+ +.|+.|+|++..... ....++...+.+++.|.++|++|.+|+.......
T Consensus 86 ~~~~l~~~~~~~g~~Gv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~------------------ 144 (273)
T PF04909_consen 86 AVEELERALQELGFRGVKLHPDLGG---FDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPD------------------ 144 (273)
T ss_dssp HHHHHHHHHHTTTESEEEEESSETT---CCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHH------------------
T ss_pred HHHHHHHhccccceeeeEecCCCCc---cccccHHHHHHHHHHHHhhccceeeeccccchhh------------------
Confidence 455666655 689999998775432 2222333334999999999999999976110000
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-HHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~-~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
..........+.+++.+. ++.++.+.|+... ..-.+.++.+++ ..++.++++-....
T Consensus 145 -----~~~~~~~~~~~~~~~~~~------P~l~ii~~H~G~~~~~~~~~~~l~~~-~~nvy~d~s~~~~~---------- 202 (273)
T PF04909_consen 145 -----APSDPADPEELEELLERF------PDLRIILAHLGGPFPWWEEALRLLDR-FPNVYVDLSGIPPF---------- 202 (273)
T ss_dssp -----HHHHHHHHHHHTTHHHHS------TTSEEEESGGGTTHHHHHHHHHHHHH-HTTEEEECHSHHSS----------
T ss_pred -----hhHHHHHHHHHHHHHHHh------cCCeEEEecCcccchhHHHHHHHHHh-CCcccccccccccc----------
Confidence 000111223334455553 4899999998753 012233444332 23567665432100
Q ss_pred cceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 317 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 317 (411)
....+ .......+...++. |. .+.+|||. |+..... .............++.+
T Consensus 203 --~~~~~---~~~~~~~l~~~~~~~g~drilfGSD~-P~~~~~~-------------------~~~~~~~~~~~~~l~~~ 257 (273)
T PF04909_consen 203 --WYFWP---PSFDRPFLRRAVDEFGPDRILFGSDY-PHPDGAS-------------------PYEYIWEAYFLDDLSEE 257 (273)
T ss_dssp --EEEET---THHCHHHHHHHHHHHTGGGEEEE--T-TSSTHHH-------------------HHHHHHHHHHHHHSSHH
T ss_pred --cccCc---ccccHHHHHHHHHHhCCceEEecCCC-CCCCccc-------------------cHHHHHHhhhccCCCHH
Confidence 01111 11223344444433 43 56899995 6543211 11111111111117999
Q ss_pred HHHHHHhHhHHHHhCC
Q 015182 318 QLASWWSERPAKLAGQ 333 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~ 333 (411)
+.-+.+..|+++++++
T Consensus 258 ~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 258 EREKILYDNARRLYGL 273 (273)
T ss_dssp HHHHHHTHHHHHHHTC
T ss_pred HHHHHHhHhHHHHcCc
Confidence 9999999999999985
No 139
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=96.31 E-value=0.78 Score=41.28 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 113 NASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
..+.+++.++..+++|+++.++.....
T Consensus 122 ~a~~~r~~~~rL~~~gl~fdl~~~~~q 148 (279)
T COG3618 122 EAPAWRANVERLAKLGLHFDLQVDPHQ 148 (279)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEeChhh
Confidence 347899999999999999999876643
No 140
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=96.21 E-value=0.14 Score=48.25 Aligned_cols=118 Identities=22% Similarity=0.231 Sum_probs=63.0
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++.||-+. +... ..+......+++.|++.|+++.+|+.+..... .
T Consensus 164 ~vvG~dl~-g~E~-----~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~-----------------------------~ 208 (331)
T PF00962_consen 164 GVVGFDLA-GDED-----GGPPLKFAPAFRKAREAGLKLTVHAGETGGPE-----------------------------H 208 (331)
T ss_dssp TEEEEEEE-SSTT-----STTGGGHHHHHHHHHHTT-EEEEEESSSSTHH-----------------------------H
T ss_pred eEEEEEec-CCcc-----cCchHHHHHHHhhhcccceeecceecccCCcc-----------------------------c
Confidence 67777652 2211 12334488899999999999999997643211 1
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+..++... +. -+|.|.....++.++++..++++ |..++||..-..... + + + .
T Consensus 209 ~~~ai~~l----------~~-~RIgHG~~~~~~p~l~~~~~~~~--I~iEvcptSN~~~~~-~----------~---~-~ 260 (331)
T PF00962_consen 209 IRDAILLL----------GA-DRIGHGVRLIKDPELLELLAERQ--IPIEVCPTSNVQLGA-V----------P---S-Y 260 (331)
T ss_dssp HHHHHHTS----------T--SEEEE-GGGGGSHHHHHHHHHTT---EEEE-HHHHHHTTS-S----------S---T-G
T ss_pred ccchhhhc----------cc-eeecchhhhhhhhHHHHHHHHhC--CCeeeCCCcCcccce-e----------e---e-c
Confidence 22223221 21 14667553213456777777766 578899964322110 0 1 1 1
Q ss_pred hHHHHHHHHhcCCccEEcCCC
Q 015182 253 NKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~ 273 (411)
....+..+++.|++++|+||.
T Consensus 261 ~~hP~~~~~~~gv~v~i~TDd 281 (331)
T PF00962_consen 261 EEHPLRKLLDAGVPVSINTDD 281 (331)
T ss_dssp GG-CHHHHHHTT-EEEE--BS
T ss_pred chhHHHHHHHcCCceeccCCC
Confidence 234566778889999999996
No 141
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=96.13 E-value=0.06 Score=50.87 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 113 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
+.+.+..+++.|++.| +++.+|+.+..... ..+. ..+..++.+.-
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~--------------------~~~~----~~v~~al~lg~--------- 223 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDG--------------------TETD----ENLVDALLLNT--------- 223 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCC--------------------CCCh----hHHHHHHHhCC---------
Confidence 5678889999999999 99999997642100 0000 01333332211
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
-+|.|.....++.++++.+++++ |..++||..-... +..+. .....+..++++|++++|+
T Consensus 224 ---~RIGHG~~~~~dp~ll~~l~~~~--I~lEvCPtSN~~~-----------~~v~~----~~~HPl~~ll~~Gv~vtin 283 (345)
T cd01321 224 ---KRIGHGFALPKHPLLMDLVKKKN--IAIEVCPISNQVL-----------GLVSD----LRNHPAAALLARGVPVVIS 283 (345)
T ss_pred ---CcCccccccCcCHHHHHHHHHcC--CeEEECcchhhhh-----------ccccc----hhhChHHHHHHCCCeEEEe
Confidence 12445442213457788888776 5778899642221 11121 1234566778899999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC---CCHHHHHHHHhHhHHHHhCC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG---VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---l~~~~al~~~T~n~A~~lg~ 333 (411)
||..... +...+..-+ +......+ ++.+++.+ ++.|+.+.-.+
T Consensus 284 TDDp~~f----------------~t~~l~~Ey---~~~~~~~g~~~l~~~~l~~-l~~nsi~~sF~ 329 (345)
T cd01321 284 SDDPGFW----------------GAKGLSHDF---YQAFMGLAPADAGLRGLKQ-LAENSIRYSAL 329 (345)
T ss_pred CCCcchh----------------CCCCchHHH---HHHHHHhccCCCCHHHHHH-HHHHHHHHHCC
Confidence 9963221 110111111 11122345 99988654 46777777666
No 142
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=96.11 E-value=0.095 Score=48.74 Aligned_cols=142 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhCC-CcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 113 NASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
+...+...++.|++.| +++.+|+.+..... .+..++...
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~-----------------------------~v~~~~~~~----------- 190 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNRE-----------------------------ELLQALLLL----------- 190 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChH-----------------------------HHHHHHHhc-----------
Confidence 5678899999999999 99999998642110 122333321
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.-++.|.....++.++++.++++++ ..++||..-.... ..+.+ ....+..++++|++++++|
T Consensus 191 -~~RIgHg~~~~~~p~~~~~l~~~~i--~ie~CP~SN~~~~-----------~~~~~----~~hP~~~~~~~G~~v~i~T 252 (305)
T cd00443 191 -PDRIGHGIFLLKHPELIYLVKLRNI--PIEVCPTSNVVLG-----------TVQSY----EKHPFMRFFKAGLPVSLST 252 (305)
T ss_pred -cceeeceEecCCCHHHHHHHHHcCC--EEEECcchhhhhc-----------CCCCh----hhChHHHHHHCCCeEEEeC
Confidence 1234554432123356777777764 6678886422110 11111 1234556688899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|...... . .+. ..+.......+++.+++.+++ .|+-+.-.+
T Consensus 253 Dd~~~~~----------------~-~l~---~E~~~~~~~~~l~~~~l~~l~-~nsi~~sf~ 293 (305)
T cd00443 253 DDPGIFG----------------T-SLS---EEYSLAAKTFGLTFEDLCELN-RNSVLSSFA 293 (305)
T ss_pred CCCcccC----------------C-ChH---HHHHHHHHHcCcCHHHHHHHH-HHHHHHhcC
Confidence 9642211 1 111 111112234579998876665 666665554
No 143
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=95.67 E-value=1.3 Score=40.78 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=97.5
Q ss_pred hHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 83 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 83 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
..++.+.++ .|..++|+.-... + ...++..+..+++.|.++|++|.+|........ .... .
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~---~-~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~-------------~~~~-~ 176 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQ---G-FYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA-------------GLEK-G 176 (293)
T ss_pred HHHHHHHHHhcCceEEEeccccc---C-CCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-------------cccc-C
Confidence 345555554 6899999843322 1 133556689999999999999999987643210 0000 0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC--ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~--~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
.+.|-. +-.++.+. +..++.+.|+. .+ --.+.+..+.. ..++..+++-..
T Consensus 177 ~~~p~~--------~~~va~~f------P~l~IVl~H~G~~~p-~~~~a~~~a~~-~~nvy~d~s~~~------------ 228 (293)
T COG2159 177 HSDPLY--------LDDVARKF------PELKIVLGHMGEDYP-WELEAIELAYA-HPNVYLDTSGVR------------ 228 (293)
T ss_pred CCCchH--------HHHHHHHC------CCCcEEEEecCCCCc-hhHHHHHHHHh-CCCceeeeeccc------------
Confidence 123322 22345543 47889999997 44 34444444422 334544433210
Q ss_pred cceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 317 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 317 (411)
.++.++ .+++.+.+ + -.+.+|||. |.....+ .+......+++.+
T Consensus 229 --~~~~~~--------~~~~~~~~~~~dkilFGSD~-P~~~~~~-----------------------~l~~~~~l~l~~e 274 (293)
T COG2159 229 --PKYFAP--------PLLEFLKELGPDKILFGSDY-PAIHPEV-----------------------WLAELDELGLSEE 274 (293)
T ss_pred --cccCCh--------HHHHHHHhcccCeEEecCCC-CCcCHHH-----------------------HHHHHHhcCCCHH
Confidence 111111 33444444 2 246889994 5532111 1223456678888
Q ss_pred HHHHHHhHhHHHHhCC
Q 015182 318 QLASWWSERPAKLAGQ 333 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~ 333 (411)
..-+..-.|++|++++
T Consensus 275 ~k~kiL~~NA~rll~l 290 (293)
T COG2159 275 VKEKILGENAARLLGL 290 (293)
T ss_pred HHHHHHHHhHHHHhCc
Confidence 8899999999999998
No 144
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.36 Score=45.19 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
....+....+++.++..|+.+.+||.+....+ .+...+....-
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~-----------------------------~i~~al~~~~~-------- 223 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPE-----------------------------SIRDALDLLGA-------- 223 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcH-----------------------------HHHHHHHHhch--------
Confidence 45678999999999999999999998533211 12222322211
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
. +|.|.-..-++.++++...+.++ ..++||-.-.. ....+.+ ....+.++++.|+.++++
T Consensus 224 --~-rI~HGi~~~~d~~L~~~l~~~qI--~levCP~SNi~-----------~~~v~~~----~~hPf~~~~d~Gv~VsLn 283 (345)
T COG1816 224 --E-RIGHGIRAIEDPELLYRLAERQI--PLEVCPLSNIQ-----------LGVVPSL----AKHPFKKLFDAGVKVSLN 283 (345)
T ss_pred --h-hhccccccccCHHHHHHHHHhCC--eeEECCcchhh-----------cccccch----hhCcHHHHHHcCCceEEc
Confidence 0 24454321134477777777765 56788853210 1112222 234566778889999999
Q ss_pred CCCCC
Q 015182 271 SDHSP 275 (411)
Q Consensus 271 sD~~p 275 (411)
||..+
T Consensus 284 TDdp~ 288 (345)
T COG1816 284 TDDPL 288 (345)
T ss_pred CCChh
Confidence 99743
No 145
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=93.76 E-value=1.3 Score=43.72 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=37.6
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
+|.|.....+..++++..++++ |..|+||..-.. .+..+.++ ...+..++.+|++++|+||.
T Consensus 351 RIGHG~~l~~~P~l~~~vke~~--I~lEvCP~SN~~-----------l~~v~~~~----~HPl~~lla~Gvpv~InSDD 412 (479)
T TIGR01431 351 RIGHGFALVKHPLVLQMLKERN--IAVEVNPISNQV-----------LQLVADLR----NHPCAYLFADNYPMVISSDD 412 (479)
T ss_pred cccCcccccCCHHHHHHHHHhC--CeEEECccchhh-----------hcccCCcc----cChHHHHHHCCCcEEEeCCC
Confidence 3556543213457788888776 577899963211 11222222 23455678889999999996
No 146
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=92.02 E-value=8.6 Score=34.34 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015182 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 192 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~ 192 (411)
+-+.|..+++.|++.+++|..|.++.+. ..+.++.+++++.|+. ..
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~~------------------------------~~~~~i~~~ak~~G~~----~~ 188 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLDE------------------------------ETYEEIAEMAKEAGIK----PY 188 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCh------------------------------HHHHHHHHHHHHhCCC----cc
Confidence 3467788889999999999999987542 2356667777776321 12
Q ss_pred eEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCC
Q 015182 193 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 272 (411)
Q Consensus 193 ~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD 272 (411)
++ +-|-+.+ ++....+.|+..+ + | ..++.+.+++..|....+=||
T Consensus 189 ~V-VkHha~p-----~v~~~~~~Gi~pS--V----------------------~-----asr~~v~~a~~~g~~FmmETD 233 (285)
T COG1831 189 RV-VKHHAPP-----LVLKCEEVGIFPS--V----------------------P-----ASRKNVEDAAELGPRFMMETD 233 (285)
T ss_pred ee-EeecCCc-----cchhhhhcCcCCc--c----------------------c-----ccHHHHHHHHhcCCceEeecc
Confidence 33 4455554 1122222343111 1 0 113466677888988888899
Q ss_pred CCCCChhhhhcccCCccccCCCCchhhhHHH-HHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 273 HSPTVPELKLLDEGNFLKAWGGISSLQFVLP-VTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 273 ~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
..--.. -|..+-+.. .++ .......+..++.+.+-+..-.||++++|+
T Consensus 234 yIDDp~------------RpgavL~Pk-tVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~ 282 (285)
T COG1831 234 YIDDPR------------RPGAVLGPK-TVPRRTREILEKGDLTEEDVYRIHVENPERVYGI 282 (285)
T ss_pred cccCcc------------cCCCcCCcc-chhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence 631110 011111111 122 222233444588999999999999999987
No 147
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=91.24 E-value=3.3 Score=39.28 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015182 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 193 (411)
Q Consensus 114 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 193 (411)
......++..+.+.|+...+||.+... . + .-++.++++..-
T Consensus 226 ~~~f~~vl~~~~~~gi~~t~HaGE~~~-~-----------~----------------~~v~~~LD~l~~----------- 266 (399)
T KOG1097|consen 226 LSLFLEVLAKAPAKGIHLTFHAGETNG-G-----------A----------------SVVKNALDLLGT----------- 266 (399)
T ss_pred hhhhHHHHHhhhhcCCcEEEEccccCC-C-----------h----------------HHHHHHHHhhCC-----------
Confidence 345666777777799999999987421 0 0 013334442221
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
-+|.|.....++-.++...+..+ |..++||..-.. .+....+| ...+..++++|++++|+||.
T Consensus 267 ~RIGHG~~l~~dp~L~~~~k~~n--I~lEiCP~SN~v-----------l~~v~d~r----nhp~~~~~~~~vP~vI~sDD 329 (399)
T KOG1097|consen 267 ERIGHGYFLTKDPELINLLKSRN--IALEICPISNQV-----------LGLVSDLR----NHPVARLLAAGVPVVINSDD 329 (399)
T ss_pred ccccCceeccCCHHHHHHHHhcC--ceEEEccchhhh-----------eecccccc----ccHHHHHHhCCCCEEEeCCC
Confidence 23556542103446788887765 567889964211 12222232 23455667889999999996
No 148
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.48 E-value=0.47 Score=40.59 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=27.8
Q ss_pred eeecccccCC---CCCCccCChHHHHHHHHcCCceeEecCC
Q 015182 4 LIDVHAHLDD---PGRTEWEGFPSGTKAAAAGGITTLIDMP 41 (411)
Q Consensus 4 lID~H~H~~~---~~~~~~~~~~~~~~~a~~~GvTtv~d~~ 41 (411)
+||+|+|+-- .|..+.|+...-.+.|...|||+++..+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 6999999841 2333444455667889999999999865
No 149
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=85.58 E-value=4.8 Score=35.84 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=45.4
Q ss_pred HHHHHHh-cCCccEEcCCC-CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 256 KLWEALM-DGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 256 ~l~~~l~-~G~~~~~~sD~-~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+++..+ .|++++++||. .|.. +. .+.....+....|++.++++...+.+|.+++..
T Consensus 158 ~~~~~~~~~g~piiisSdAh~~~~-----------------l~----~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~ 216 (237)
T PRK00912 158 DNLALARKYDFPLVLTSGAMSCYD-----------------LR----SPREMIALAELFGMEEDEALKALSYYPESIIKK 216 (237)
T ss_pred HHHHHHHhcCCCEEEeCCCCcccc-----------------cC----CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHh
Confidence 3444443 49999999993 2211 11 122233445678999999999999999999988
Q ss_pred --CCCCcccccCC
Q 015182 334 --VSKGAIAIGNH 344 (411)
Q Consensus 334 --~~~G~I~~G~~ 344 (411)
.+.+.|..|..
T Consensus 217 ~~~~~~~~~~~~~ 229 (237)
T PRK00912 217 NRNRKNYVIEGVE 229 (237)
T ss_pred hccCCCcccccEE
Confidence 44566666643
No 150
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.99 E-value=20 Score=35.69 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCccch-HHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAYNA-SALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~g~~~ik~ 99 (411)
..-.+.++..|+..++-+- . ..+...++...+..+. ...+.........+ .+.+.. +..+++.+.|+..|.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd-~----lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I 174 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFD-A----LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI 174 (499)
T ss_pred HHHHHHHHHcCCCEEEEEe-c----CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4456788999999987653 1 1334555554444332 22232221111122 122222 3344566789988754
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCcc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 139 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 139 (411)
-+. .| ..+++...++++..++. ++++.+|++++.
T Consensus 175 -kDt---aG--ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 175 -KDM---AA--LLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred -CCC---cc--CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 221 23 56888999999888765 699999999875
No 151
>PRK06361 hypothetical protein; Provisional
Probab=83.51 E-value=11 Score=32.66 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=55.6
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHH-hcCCccEEcCC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL-MDGHIDMLSSD 272 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l-~~G~~~~~~sD 272 (411)
-.+.|.... ..++++.++++|+ ..+++... + . + . ....+++.. +.|++++++||
T Consensus 115 dvlaHpd~~--~~~~~~~~~~~~~--~lEin~~~-----------~-~----~----~-~~~~~l~~a~~~gi~vv~~SD 169 (212)
T PRK06361 115 DILAHPGLI--TEEEAELAAENGV--FLEITARK-----------G-H----S----L-TNGHVARIAREAGAPLVINTD 169 (212)
T ss_pred cEecCcchh--hHHHHHHHHHcCe--EEEEECCC-----------C-c----c----c-chHHHHHHHHHhCCcEEEECC
Confidence 346687654 3466788877774 44544210 0 0 0 0 011233333 34999999999
Q ss_pred CCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 273 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 273 ~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.. .... + . .+..+.......+++.++++.+.+.||++++++
T Consensus 170 aH--~~~d-------~----------~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 170 TH--APSD-------L----------I-TYEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred CC--CHHH-------H----------H-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 42 2111 1 0 122233345677899999999999999999874
No 152
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.00 E-value=25 Score=33.59 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCcc-chHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~~ik~ 99 (411)
..-...++..|++.++.+-. ..+...++...+..+. +..+........+| .+.+ .++-.+++.+.|+++|.+
T Consensus 101 e~Fv~ka~~nGidvfRiFDA-----lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci 175 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDA-----LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI 175 (472)
T ss_pred HHHHHHHHhcCCcEEEechh-----ccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe
Confidence 45667889999999987641 1234556555444432 23333322222222 1111 234556777889988654
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHH-hCCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLA-RYKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~-~~g~~v~~H~~~~~~ 140 (411)
= +- .| .+++....++++..+ +.+++|.+|++..+.
T Consensus 176 K-Dm---aG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 176 K-DM---AG--LLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred e-cc---cc--cCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 1 11 23 567777777777766 578999999987653
No 153
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=80.41 E-value=45 Score=32.94 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCC-Ccc-chHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE-NAY-NASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~ik~ 99 (411)
....+.+...|+..++-+- . ..+.+.++...+..+... .+.........+. +.+ -++..+++.+.|+..|.+
T Consensus 108 ~~fv~~a~~~Gidi~Rifd-~----lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I 182 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFD-A----LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICI 182 (468)
T ss_pred HHHHHHHHHCCCCEEEEcc-c----CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 3456888999999998654 1 134555655555444322 2222221111221 111 123445566789988755
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
.+. .| ..+++.+.++++..++ .++++.+|++++..
T Consensus 183 -kDt---aG--~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 183 -KDM---AG--ILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred -CCC---CC--CcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 222 23 5678888888888775 46999999998653
No 154
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=79.18 E-value=0.51 Score=45.71 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++.||....++. +....+.+.+..+.+.+.+.++++.++
T Consensus 139 ~~a~GiTt~~d~~---~~~~~~~~~~~~~~~l~~~~~l~~rv~ 178 (404)
T PF07969_consen 139 AGAYGITTVLDYG---GGFASDPEDLEALRELAAEGGLPLRVH 178 (404)
T ss_dssp HCHTCEEEETTCE---CCCGEHHHHHHHHHHHHHCTC--SEEE
T ss_pred hcCCCeEEecCCc---cccCCCHHHHHHHHHHhhhcCCCeeee
Confidence 4666776655554 112345566767666666666444443
No 155
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=78.38 E-value=40 Score=34.45 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecC-CCccch-HHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP-ENAYNA-SALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~g~~~ik~ 99 (411)
+.-.+.+...|+..++-+- . ..+...++...+..+.. ..+.........+ -+.+.. +..+++.+.|+..|.+
T Consensus 99 ~~~v~~a~~~Gidv~Rifd-~----lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I 173 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVFD-A----LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAI 173 (596)
T ss_pred HHHHHHHHHcCCCEEEEcc-c----CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3467889999999998654 1 12344444444433322 2222221111122 122222 3344556789987654
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
.+. .| ..+++...++++..++ .++++.+|++++..
T Consensus 174 -kDt---aG--~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~G 209 (596)
T PRK14042 174 -KDM---AG--LLTPTVTVELYAGLKQATGLPVHLHSHSTSG 209 (596)
T ss_pred -CCc---cc--CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCC
Confidence 222 23 5678888888888764 58999999998653
No 156
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.21 E-value=55 Score=29.68 Aligned_cols=102 Identities=13% Similarity=-0.029 Sum_probs=57.8
Q ss_pred HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecCCCccch-HHHHHHHHCCceEEEEeccC
Q 015182 26 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCP 103 (411)
Q Consensus 26 ~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~ik~~~~~ 103 (411)
.+.+...|+..++-.- . ....+.+....+.++. ...+.+..... +..+.+.+ +.++.+.+.|+..|.+ .+.
T Consensus 88 l~~a~~~gv~~iri~~-~----~~~~~~~~~~i~~ak~~G~~v~~~~~~a-~~~~~~~~~~~~~~~~~~g~~~i~l-~DT 160 (266)
T cd07944 88 LEPASGSVVDMIRVAF-H----KHEFDEALPLIKAIKEKGYEVFFNLMAI-SGYSDEELLELLELVNEIKPDVFYI-VDS 160 (266)
T ss_pred HHHHhcCCcCEEEEec-c----cccHHHHHHHHHHHHHCCCeEEEEEEee-cCCCHHHHHHHHHHHHhCCCCEEEE-ecC
Confidence 4566778887766432 1 1234555555544442 23444443322 11222333 2334445678887654 222
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-CC--CcEEEecCCcc
Q 015182 104 SGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 139 (411)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~a~~-~g--~~v~~H~~~~~ 139 (411)
....+++.+.++++..++ .+ +++.+|++++.
T Consensus 161 -----~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~ 194 (266)
T cd07944 161 -----FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNL 194 (266)
T ss_pred -----CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 235688999999988765 45 89999999864
No 157
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=75.37 E-value=25 Score=31.68 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=39.6
Q ss_pred hHHHHHHHHCCceEEEEeccCCCCCCCCCCCH-HH---HHHHHHHHHhC-CCcEEEecCCcccchhhh
Q 015182 83 ASALEALLNAGVLGLKSFMCPSGINDFPMTNA-SH---IKEGLSVLARY-KRPLLVHAEMEKGSERHV 145 (411)
Q Consensus 83 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~-~~---l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~ 145 (411)
++...++.+.|+.-|.+-.... .++....+. ++ +..+++.+++. ++++++|...+..++.++
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st-~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al 92 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGEST-RPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAAL 92 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH
Confidence 4455666788999998842111 122222333 35 77777888876 999999998876655443
No 158
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=74.98 E-value=56 Score=30.85 Aligned_cols=104 Identities=7% Similarity=-0.017 Sum_probs=57.3
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCCCccchHH-HHHHHHCCceEEEEec
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFM 101 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ik~~~ 101 (411)
...+.+...|+..++-.. .. ..........+.++.. ..+.+.+... ...+.+.+.+ ++.+.+.|+..|.+ .
T Consensus 92 ~dl~~a~~~gvd~iri~~-~~----~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i-~ 164 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT-HC----TEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYV-V 164 (337)
T ss_pred HHHHHHHHcCCCEEEEEE-ec----chHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEe-C
Confidence 345677888888877432 11 1223344444444332 2333332221 1122333333 33445678887643 2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCcc
Q 015182 102 CPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 139 (411)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 139 (411)
+. .....++.+.++++..++. ++++.+|++++-
T Consensus 165 DT-----~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 165 DS-----AGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred CC-----CCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 21 2356788999999888764 699999999864
No 159
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.34 E-value=33 Score=31.01 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=39.7
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
..+.++.+.|..++-+++...........+.+.++++.+.++++|+.+.+|+..
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~ 67 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPY 67 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 456777788999998887654211112467788899999999999999999753
No 160
>PRK01060 endonuclease IV; Provisional
Probab=73.91 E-value=55 Score=29.72 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=39.6
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCc---EEEecCC
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEM 137 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~~~ 137 (411)
+.++.+.+.|.+++-+++..+........+++.++++.+.++++|+. +.+|+..
T Consensus 16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~ 72 (281)
T PRK01060 16 GAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPY 72 (281)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecce
Confidence 45666778999999998763321111245788899999999999998 8888764
No 161
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=73.51 E-value=61 Score=32.08 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCccc-hHHHHHHHHCCceEEEEe
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAYN-ASALEALLNAGVLGLKSF 100 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~ik~~ 100 (411)
.-.+.+++.|+..++-.- .. .+.+.+....+.++. ...+.........+ .+.+. ++..+++.+.|+..|.+
T Consensus 99 ~fv~~A~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i- 172 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIFD-AL----NDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI- 172 (467)
T ss_pred HHHHHHHHCCcCEEEEEE-eC----CHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 346788999999887553 11 234455544444432 22333222111122 12222 23334556789987654
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 101 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
-+. .| ..++....++++..++ .++++.+|++++..
T Consensus 173 ~Dt---~G--~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 173 KDM---AG--LLTPKRAYELVKALKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred CCc---cC--CcCHHHHHHHHHHHHHhcCCceEEEecCCCC
Confidence 221 23 5678888888887764 58999999998753
No 162
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=72.36 E-value=75 Score=29.93 Aligned_cols=103 Identities=11% Similarity=-0.017 Sum_probs=55.9
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCCCccchHHH-HHHHHCCceEEEEecc
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASAL-EALLNAGVLGLKSFMC 102 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~ik~~~~ 102 (411)
..+.+...|+..++-.. .. ..........+.++... .+.+.+... ...+++.+.++ +.+.+.|+..|.+ .+
T Consensus 92 dl~~a~~~gvd~iri~~-~~----~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i-~D 164 (333)
T TIGR03217 92 DLKAAYDAGARTVRVAT-HC----TEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYI-VD 164 (333)
T ss_pred HHHHHHHCCCCEEEEEe-cc----chHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEE-cc
Confidence 45677788888887432 11 12233444444444332 222222211 11223333333 3344578887644 22
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CC--CcEEEecCCcc
Q 015182 103 PSGINDFPMTNASHIKEGLSVLAR-YK--RPLLVHAEMEK 139 (411)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~~~a~~-~g--~~v~~H~~~~~ 139 (411)
. .....++.+.+++...++ .+ +++.+|++++.
T Consensus 165 T-----~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 199 (333)
T TIGR03217 165 S-----AGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199 (333)
T ss_pred C-----CCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 2 235678889988888775 44 88999999864
No 163
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=72.31 E-value=1.4 Score=43.78 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=12.1
Q ss_pred CCceeecccccCCC
Q 015182 1 MPGLIDVHAHLDDP 14 (411)
Q Consensus 1 lPGlID~H~H~~~~ 14 (411)
+|||||+|+|+...
T Consensus 37 ~PGfiD~H~H~~~~ 50 (479)
T cd01300 37 LPGFIDSHSHLLLG 50 (479)
T ss_pred ccCcccccccchhh
Confidence 69999999999644
No 164
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=72.19 E-value=81 Score=31.08 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=59.1
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecCC-Cccc-hHHHHHHHHCCceEEEEe
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVPE-NAYN-ASALEALLNAGVLGLKSF 100 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~ik~~ 100 (411)
.-.+.+++.|+..++-.- .. .+...+....+.++. ...+...+.....+. +.+. ++..+++.+.|++.|.+
T Consensus 100 ~~v~~A~~~Gvd~irif~-~l----nd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i- 173 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFD-AL----NDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICI- 173 (448)
T ss_pred HHHHHHHHCCCCEEEEEE-ec----CcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 445778899999887653 11 122334444444432 233333222111121 1122 23345566789987654
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 101 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
.+. .| ..+++...++++..++ .++++.+|++++.
T Consensus 174 ~Dt---~G--~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~ 208 (448)
T PRK12331 174 KDM---AG--ILTPYVAYELVKRIKEAVTVPLEVHTHATS 208 (448)
T ss_pred cCC---CC--CCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 222 23 5678888888887764 5899999999865
No 165
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=72.14 E-value=1.1 Score=44.82 Aligned_cols=15 Identities=47% Similarity=0.964 Sum_probs=12.6
Q ss_pred CCceeecccccCCCC
Q 015182 1 MPGLIDVHAHLDDPG 15 (411)
Q Consensus 1 lPGlID~H~H~~~~~ 15 (411)
+|||||+|.|+-..|
T Consensus 62 ~PGfvDaH~Hl~~~G 76 (535)
T COG1574 62 LPGFVDAHLHLISGG 76 (535)
T ss_pred ccccchhhHHHHHhh
Confidence 799999999996544
No 166
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=71.39 E-value=11 Score=34.16 Aligned_cols=111 Identities=21% Similarity=0.123 Sum_probs=57.5
Q ss_pred hHHHHHHHHcCCceeEe-cCCCCC---CC-----CCCCHHHHHHHHHHHhcCCceEEEEEeeecC-C-----CccchHHH
Q 015182 22 FPSGTKAAAAGGITTLI-DMPLNS---DP-----STISTETLKLKVDAAEKRIYVDVGFWGGLVP-E-----NAYNASAL 86 (411)
Q Consensus 22 ~~~~~~~a~~~GvTtv~-d~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~ 86 (411)
.+.-...|.+.|+--+. |-+=.. .. .......++++.+=++.+ .|.+.++..... . .....+.+
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K-gVgi~lw~~~~~~~~~~~~~~~~~~~f 112 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK-GVGIWLWYHSETGGNVANLEKQLDEAF 112 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT-T-EEEEEEECCHTTBHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc-CCCEEEEEeCCcchhhHhHHHHHHHHH
Confidence 34455668889988775 433110 00 000112445554444444 245555432111 0 01112345
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
..+.+.|+.|||+-+-.. ..+.....++++++.|+++++.|.+|-..
T Consensus 113 ~~~~~~Gv~GvKidF~~~----d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 113 KLYAKWGVKGVKIDFMDR----DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHHHCTEEEEEEE--SS----TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HHHHHcCCCEEeeCcCCC----CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 556679999999843222 12344678899999999999999999654
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=70.64 E-value=74 Score=28.74 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=56.0
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCCCccchH-HHHHHHHCCceEEEEec
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNAS-ALEALLNAGVLGLKSFM 101 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~ik~~~ 101 (411)
.....+...|+..++-.. .. .....+....+.++.. ..+.+..... ...+++.+. .++.+.+.|++.|.+ .
T Consensus 89 ~~i~~a~~~g~~~iri~~-~~----s~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~G~d~i~l-~ 161 (263)
T cd07943 89 DDLKMAADLGVDVVRVAT-HC----TEADVSEQHIGAARKLGMDVVGFLMMS-HMASPEELAEQAKLMESYGADCVYV-T 161 (263)
T ss_pred HHHHHHHHcCCCEEEEEe-ch----hhHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHHcCCCEEEE-c
Confidence 345667777887776432 11 1223344444434332 2333333211 112233332 334445678887644 2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHh-CCC-cEEEecCCcc
Q 015182 102 CPSGINDFPMTNASHIKEGLSVLAR-YKR-PLLVHAEMEK 139 (411)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~-~v~~H~~~~~ 139 (411)
+. ....+++.+.++++..++ .+. ++.+|++++.
T Consensus 162 DT-----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 162 DS-----AGAMLPDDVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred CC-----CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 21 235688899999988765 465 8999999864
No 168
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=70.42 E-value=29 Score=29.71 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcE
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 131 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 131 (411)
..+.-+.++|+.++|.|.- .| .-..+|++.+.+.|.+.|+++
T Consensus 139 tAiaml~dmG~~SiKffPm----~G--l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 139 TAIAMLKDMGGSSIKFFPM----GG--LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHTT--EEEE-------TT--TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHcCCCeeeEeec----CC--cccHHHHHHHHHHHHHcCcee
Confidence 3455566899999998743 23 346799999999999999998
No 169
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=69.45 E-value=32 Score=29.84 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=31.9
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcE
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 131 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 131 (411)
.+.-++++|..++|.|.- .| .-..+|++.+.+.|.++|+++
T Consensus 140 Aiaml~dmG~~SiKffPM----~G--l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 140 AIAMLKDMGGSSVKFFPM----GG--LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred HHHHHHHcCCCeeeEeec----CC--cccHHHHHHHHHHHHHcCCcc
Confidence 455566899999998743 23 346799999999999999974
No 170
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=69.07 E-value=74 Score=32.62 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecC-CCccch-HHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVP-ENAYNA-SALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~g~~~ik~ 99 (411)
..-.+.+...|+..++-+- . ..+...+....+.++... .+.........+ .+.+.+ +.++++.+.|+..|.+
T Consensus 100 ~~~v~~a~~~Gid~~rifd-~----lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i 174 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFD-A----MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI 174 (593)
T ss_pred HHHHHHHHhcCCCEEEEee-e----CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456788999999988653 1 123444554444444222 222211111122 112222 2334455689887654
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
.+. .| ...++.+.++++..++ .++++.+|++++..
T Consensus 175 -~Dt---~G--~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 210 (593)
T PRK14040 175 -KDM---AG--LLKPYAAYELVSRIKKRVDVPLHLHCHATTG 210 (593)
T ss_pred -CCC---CC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCCc
Confidence 221 23 4678888888888764 68999999998753
No 171
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=67.75 E-value=12 Score=33.31 Aligned_cols=96 Identities=18% Similarity=0.039 Sum_probs=50.0
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
-++.+|+..... ..++.+.|++.++.++++|+.+.. +....+.+..+ ..
T Consensus 37 yID~~K~g~Gt~-----~l~~~~~l~eki~l~~~~gV~v~~---GGtl~E~a~~q-----------------------~~ 85 (244)
T PF02679_consen 37 YIDFLKFGWGTS-----ALYPEEILKEKIDLAHSHGVYVYP---GGTLFEVAYQQ-----------------------GK 85 (244)
T ss_dssp G-SEEEE-TTGG-----GGSTCHHHHHHHHHHHCTT-EEEE----HHHHHHHHHT-----------------------T-
T ss_pred hccEEEecCcee-----eecCHHHHHHHHHHHHHcCCeEeC---CcHHHHHHHhc-----------------------Ch
Confidence 345666543211 245667888888888888888765 11111111111 13
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCC---hHHHHHHHHHHhHCCCCEEEEccc
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCP 225 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~---~~~~~~~i~~~~~~g~~i~~~~~p 225 (411)
+.+.++.+++.||. .+-+...+. .++-.++|+.+++.|..+..++..
T Consensus 86 ~~~yl~~~k~lGf~------~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 86 FDEYLEECKELGFD------AIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHHCT-S------EEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHHcCCC------EEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccC
Confidence 55666777766432 133333221 113457788888888888877764
No 172
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=67.26 E-value=1.3e+02 Score=29.32 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCc-
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP- 130 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~- 130 (411)
..+....+.. ....+.++.+..+.. .-...+.+....|+..+.+|+...-....+.++++.+.++.+.++++|+.
T Consensus 117 ~~~~~~~~~~-~~~~~~iGaHvSiaG---G~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~ 192 (413)
T PTZ00372 117 NAFNKIAELA-EKSNVYIGAHVSASG---GVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDP 192 (413)
T ss_pred HHHHHHHHHh-hccCceEEEEEeccc---cHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3444443332 334567777665431 22345667777899999999875422223456889999999999999874
Q ss_pred --EEEecCCc
Q 015182 131 --LLVHAEME 138 (411)
Q Consensus 131 --v~~H~~~~ 138 (411)
+.+|+...
T Consensus 193 ~~i~~HapYl 202 (413)
T PTZ00372 193 KFILPHGSYL 202 (413)
T ss_pred ceEEeecCce
Confidence 78998864
No 173
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.73 E-value=58 Score=30.86 Aligned_cols=53 Identities=13% Similarity=-0.026 Sum_probs=33.3
Q ss_pred cchHHHHHHHHCCceEEEEecc-CCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 81 YNASALEALLNAGVLGLKSFMC-PSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~-~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+.+..+..+.+.|++.+=+... +.....-..++.+++.+++++||++|+.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 3456777777788776533211 1111000246788899999999999986654
No 174
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=65.37 E-value=95 Score=31.79 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCccc-hHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAYN-ASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~ik~ 99 (411)
..-.+.++..|+..++-+- .. .+.+.+....+.++. ...+.+.......+ .+.+. ++-++++.+.|+..|.+
T Consensus 94 ~~~v~~a~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFD-AL----NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred HHHHHHHHHCCCCEEEEEE-ec----CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456778899999877543 11 123444444444432 23444332211122 12222 23344566789987654
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
-+. .| ..++..+.++++..++ .++++.+|++++..
T Consensus 169 -~Dt---~G--~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~G 204 (582)
T TIGR01108 169 -KDM---AG--ILTPKAAYELVSALKKRFGLPVHLHSHATTG 204 (582)
T ss_pred -CCC---CC--CcCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 221 23 4678888888888764 58999999998753
No 175
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.14 E-value=9.7 Score=33.83 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=63.8
Q ss_pred ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC---ccc-----hHHHHHHHHC
Q 015182 21 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---AYN-----ASALEALLNA 92 (411)
Q Consensus 21 ~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~ 92 (411)
++...++.++.+|+.+|+-.| . .+....+...+ ....+....++...+ ... ..++++.++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p-~---------~~~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTP-G---------YVKPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEG-G---------GHHHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECH-H---------HHHHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 677888899999999998655 1 12222222222 223454444332211 122 5677788889
Q ss_pred CceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 93 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 93 g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
|++.+++.+.+... ++....-.+++.++.+.|+++|+++.+.+
T Consensus 89 GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp T-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred CCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 99999987765200 11112234789999999999999999984
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=64.86 E-value=1.1e+02 Score=27.82 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=57.6
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeee-cCCCccchH-HHHHHHHCCceEEEEe
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGL-VPENAYNAS-ALEALLNAGVLGLKSF 100 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~ik~~ 100 (411)
.-.+.+...|+..|+-.. .. .+.+.+....+.++... .+.+...... ...+.+.+. .++++.+.|+..|.+
T Consensus 95 ~di~~~~~~g~~~iri~~-~~----~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l- 168 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFD-AL----NDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI- 168 (275)
T ss_pred HHHHHHHHcCCCEEEEee-cC----ChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 345567788888876543 11 23444554444444322 2332221101 111223222 334455678887654
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 101 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
.+. . ...+++.+..+++..++ .++++.+|++++.
T Consensus 169 ~DT---~--G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 203 (275)
T cd07937 169 KDM---A--GLLTPYAAYELVKALKKEVGLPIHLHTHDTS 203 (275)
T ss_pred cCC---C--CCCCHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 221 2 35678888888888765 5799999999864
No 177
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.45 E-value=67 Score=29.20 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=38.7
Q ss_pred hHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCc---EEEecCCc
Q 015182 83 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHAEME 138 (411)
Q Consensus 83 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~~~~ 138 (411)
.+.+.++.+.|+.++.+|...+.....+..+.+...++.+...++++. +.+|+...
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~ 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee
Confidence 346777788999999998865432222345566666666777788776 78997763
No 178
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.89 E-value=1.2e+02 Score=31.26 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=59.8
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCccc-hHHHHHHHHCCceEEEEe
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAYN-ASALEALLNAGVLGLKSF 100 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~ik~~ 100 (411)
.-.+.++..|+..++-+- . ..+...+....+.++. ...+.........+ .+.+. ++-++++.+.|+..|.+
T Consensus 100 ~~v~~A~~~Gvd~irif~-~----lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i- 173 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFD-A----LNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICI- 173 (592)
T ss_pred HHHHHHHHCCCCEEEEEE-e----cChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 446778899999887653 1 1223444444443332 22333222111112 11222 33445566789887654
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 101 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
-+. .| ...++.+.++++..++ .++++.+|++++..
T Consensus 174 ~Dt---~G--~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~G 209 (592)
T PRK09282 174 KDM---AG--LLTPYAAYELVKALKEEVDLPVQLHSHCTSG 209 (592)
T ss_pred CCc---CC--CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 221 23 4678888888888764 58999999998753
No 179
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=63.56 E-value=1.1e+02 Score=28.18 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=57.4
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHH----HHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHH
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTET----LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN 91 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
-+.+.+.+-.+..+..||..+.-.+ .+.. ..-+.+. ++...+..+++.. +.. +....+.+.++..+...+
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~G-stGE~~~Ls~eEr~~l~~~~~~~~~~~~p--vi~--gv~~~t~~~i~~a~~a~~ 92 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAG-GTGEFFSLTPDEYAQVVRAAVEETAGRVP--VLA--GAGYGTATAIAYAQAAEK 92 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-CCcCcccCCHHHHHHHHHHHHHHhCCCCC--EEE--ecCCCHHHHHHHHHHHHH
Confidence 3445556667778899999998776 2221 1112222 2222232233322 222 222222333444455567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhCCCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARYKRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~g~~v~~H~ 135 (411)
.|++++-+... .+...+++.+.+-++.. ...++|+.+.-
T Consensus 93 ~Gad~v~~~pP-----~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 93 AGADGILLLPP-----YLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred hCCCEEEECCC-----CCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 89999865332 12234667777766554 45689988874
No 180
>PRK15108 biotin synthase; Provisional
Probab=62.47 E-value=1.1e+02 Score=29.06 Aligned_cols=113 Identities=15% Similarity=0.042 Sum_probs=64.7
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEE
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 97 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 97 (411)
..|.+....+.+.+.|++.++-......|.....+.+.+..+..+.. .+.+....+. . ..+.+.++++.|++.+
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~-~i~v~~s~G~--l---s~e~l~~LkeAGld~~ 150 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-GLETCMTLGT--L---SESQAQRLANAGLDYY 150 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-CCEEEEeCCc--C---CHHHHHHHHHcCCCEE
Confidence 34556666777788999999653311244334455555555444422 2222222221 1 2346778888999877
Q ss_pred EEeccCCC--CCCC-CCCCHHHHHHHHHHHHhCCCcEEEecC
Q 015182 98 KSFMCPSG--INDF-PMTNASHIKEGLSVLARYKRPLLVHAE 136 (411)
Q Consensus 98 k~~~~~~~--~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~ 136 (411)
-+.+.... .... ..-+.+...+.++.|++.|+.+.+|..
T Consensus 151 n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i 192 (345)
T PRK15108 151 NHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGI 192 (345)
T ss_pred eeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEE
Confidence 66554310 0000 122456777888899999999988843
No 181
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=62.42 E-value=1.1e+02 Score=28.33 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=57.3
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHH----HHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHC
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKL----KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 92 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
+.+.+.+-.+..+..||..+.-.+ .+.. ..-+.+.-.+ ..+...++ +.+.. +......+.++..+...+.
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~G-stGE~~~Lt~eEr~~~~~~~~~~~~~~--~pvi~--gv~~~t~~~i~~~~~a~~~ 100 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAG-GTGEFFSLTPDEYSQVVRAAVETTAGR--VPVIA--GAGGGTAQAIEYAQAAERA 100 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-CCcCcccCCHHHHHHHHHHHHHHhCCC--CcEEE--ecCCCHHHHHHHHHHHHHh
Confidence 344556667778899999998776 2221 1122222222 22222232 22222 2222223344555556678
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhCCCcEEEec
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARYKRPLLVHA 135 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~g~~v~~H~ 135 (411)
|++++-+... .+...+++.+.+-++.. +..++||.+.-
T Consensus 101 Gadav~~~pP-----~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 101 GADGILLLPP-----YLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCEEEECCC-----CCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9999865332 12234667777766654 44689988764
No 182
>PLN02417 dihydrodipicolinate synthase
Probab=60.48 E-value=1.1e+02 Score=27.82 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=57.0
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHHHHHHHhc--CCceEEEEEeeecC-CCccchHHHHHHHHCC
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEK--RIYVDVGFWGGLVP-ENAYNASALEALLNAG 93 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 93 (411)
+.+.+.+-.+..+..|+..+.-.+ .+.. ..-+.+.-.+..+.... ...+.+ ..+... ...+.++..+...+.|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~G-stGE~~~ls~~Er~~~~~~~~~~~~~~~pv--i~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGGKIKV--IGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-cCcchhhCCHHHHHHHHHHHHHHhCCCCcE--EEECCCccHHHHHHHHHHHHHcC
Confidence 445556666777889999998776 2211 11122222222221111 122322 222222 1223344445556789
Q ss_pred ceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 94 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 94 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
++++-+... .+...+++++.+-++...+.. |+.+.
T Consensus 97 adav~~~~P-----~y~~~~~~~i~~~f~~va~~~-pi~lY 131 (280)
T PLN02417 97 MHAALHINP-----YYGKTSQEGLIKHFETVLDMG-PTIIY 131 (280)
T ss_pred CCEEEEcCC-----ccCCCCHHHHHHHHHHHHhhC-CEEEE
Confidence 999866432 123456788888888777677 88766
No 183
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=60.17 E-value=1.4e+02 Score=27.59 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=56.7
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCC-CCCCCCCHHHHHH----HHHHHhcCCceEEEEEeeecCCCccchHHHHHHHH
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLN-SDPSTISTETLKL----KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN 91 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
-+.+.+..-.+..+..||..+.-.+.. ..+. -+.+.-++ ..+..+++ +.+.. +......+.++..+...+
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~g~--~pvi~--gv~~~t~~ai~~a~~a~~ 97 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFS-LTPAEYEQVVEIAVSTAKGK--VPVYT--GVGGNTSDAIEIARLAEK 97 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCccc-CCHHHHHHHHHHHHHHhCCC--CcEEE--ecCccHHHHHHHHHHHHH
Confidence 344556666777889999999876621 1112 22222222 22222333 22222 222122233444555567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhCCCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARYKRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~g~~v~~H~ 135 (411)
.|++++-+.. | .+...+++.+.+-++.. ...++++.+.-
T Consensus 98 ~Gadav~~~p-P----~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 98 AGADGYLLLP-P----YLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred hCCCEEEECC-C----CCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 8999986533 2 12234667776666654 44678887753
No 184
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=60.11 E-value=1.6e+02 Score=33.02 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEE--EEeeecCCC--ccch----HHHHHHHHCC
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVG--FWGGLVPEN--AYNA----SALEALLNAG 93 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~--~~~~----~~~~~~~~~g 93 (411)
+...+.+.+.||..++-+- . ..+.+.++...+..+. +..+... +.+.+.+.. ...+ +-.+++.+.|
T Consensus 628 ~~f~~~~~~~GidifrifD-~----lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 628 KYFVKQAAQGGIDIFRVFD-S----LNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred HHHHHHHHHcCCCEEEECc-c----CcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 3456788999999998764 1 1334555554444432 2233222 222222211 1112 2344566789
Q ss_pred ceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 94 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 94 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
+..|.+ -+. .| ..++....++++..++ .++++.+|++++.
T Consensus 703 ad~I~i-kDt---~G--ll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~ 743 (1143)
T TIGR01235 703 AHILGI-KDM---AG--LLKPAAAKLLIKALREKTDLPIHFHTHDTS 743 (1143)
T ss_pred CCEEEE-CCC---cC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 887654 121 23 5678888888887764 5899999999875
No 185
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=59.32 E-value=48 Score=29.38 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.-++++|+.... ...++.+.+++.++.|+++|+++..= + ...+..+.+ .
T Consensus 23 ~yID~lKfg~Gt-----~~l~~~~~l~eki~la~~~~V~v~~G--G-tl~E~~~~q-----------------------~ 71 (237)
T TIGR03849 23 DYITFVKFGWGT-----SALIDRDIVKEKIEMYKDYGIKVYPG--G-TLFEIAHSK-----------------------G 71 (237)
T ss_pred hheeeEEecCce-----EeeccHHHHHHHHHHHHHcCCeEeCC--c-cHHHHHHHh-----------------------h
Confidence 346667753211 12456678999999999999888753 2 122211111 2
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCC----ChHHHHHHHHHHhHCCCCEEEEcccc
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLS----DASSSLDLLMEAKTNGDSITVETCPH 226 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~----~~~~~~~~i~~~~~~g~~i~~~~~p~ 226 (411)
.+.+.++.+++.||.. +-+...+ .. +-..+|+.+++.|..+..++...
T Consensus 72 ~~~~Yl~~~k~lGf~~------IEiS~G~~~i~~~-~~~rlI~~~~~~g~~v~~EvG~K 123 (237)
T TIGR03849 72 KFDEYLNECDELGFEA------VEISDGSMEISLE-ERCNLIERAKDNGFMVLSEVGKK 123 (237)
T ss_pred hHHHHHHHHHHcCCCE------EEEcCCccCCCHH-HHHHHHHHHHhCCCeEecccccc
Confidence 3556666777664321 2222222 22 45578888888888888777654
No 186
>PRK08392 hypothetical protein; Provisional
Probab=59.29 E-value=1.2e+02 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=24.3
Q ss_pred eecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 5 ID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
||.|+|.... .....+....+.|.+.|++.+.-
T Consensus 1 ~D~H~HT~~s--d~~~~~~e~v~~A~~~Gl~~i~i 33 (215)
T PRK08392 1 MDLHTHTVYS--DGIGSVRDNIAEAERKGLRLVGI 33 (215)
T ss_pred CccccCCCCc--CCcCCHHHHHHHHHHcCCCEEEE
Confidence 7999997543 23345667788999999998853
No 187
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.18 E-value=1.4e+02 Score=27.04 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=37.8
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEecCC
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEM 137 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~ 137 (411)
..+..+.+.|..++.+.+........+..+.+.++++.+.+.++ ++.+.+|+..
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 68 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPY 68 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 34566667899898887754321111223678899999999999 8999999754
No 188
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.93 E-value=1.3e+02 Score=27.41 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=56.7
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHHHHHHHhc--CCceEEEEEeeecCCC-ccchHHHHHHHHCC
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEK--RIYVDVGFWGGLVPEN-AYNASALEALLNAG 93 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 93 (411)
+.+.+..-.+..+..|+..+.-.+ .+.. ..-+.+..++..+.... ...+. ...+....+ .+.++..+...+.|
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~G-stGE~~~lt~~Er~~l~~~~~~~~~~~~~--vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCG-TTGESPTLSDEEHEAVIEAVVEAVNGRVP--VIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC-CCcchhhCCHHHHHHHHHHHHHHhCCCCc--EEeccCCccHHHHHHHHHHHHHcC
Confidence 444555666778889999998776 2211 11222222222222211 11222 223333222 23344445556789
Q ss_pred ceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhCCCcEEEec
Q 015182 94 VLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARYKRPLLVHA 135 (411)
Q Consensus 94 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~g~~v~~H~ 135 (411)
++++-+.. + .+...+++++.+-++.. ...++++.++-
T Consensus 96 ~d~v~~~~-P----~~~~~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 96 ADAALVVT-P----YYNKPSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred CCEEEEcc-c----ccCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99986543 2 12234566666666554 44689999874
No 189
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.56 E-value=48 Score=30.48 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~ 138 (411)
++.+.+.|+.++-+. . +......++.+|-.++++.+.+. .+++.+|+...
T Consensus 28 i~~l~~~Gv~gi~~~--G-s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 80 (292)
T PRK03170 28 VDYLIANGTDGLVVV--G-TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSN 80 (292)
T ss_pred HHHHHHcCCCEEEEC--C-cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCc
Confidence 344556899887432 2 12344577888888888776653 47888887654
No 190
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.95 E-value=56 Score=30.06 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=31.3
Q ss_pred HHHHHCC-ceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCc
Q 015182 87 EALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEME 138 (411)
Q Consensus 87 ~~~~~~g-~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~ 138 (411)
+.+++.| +.++-+ ..+ ......++.+|-+++++.+.+. .++|.+|+...
T Consensus 28 ~~~i~~G~v~gi~~--~Gs-tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 80 (290)
T TIGR00683 28 RHNIDKMKVDGLYV--GGS-TGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 80 (290)
T ss_pred HHHHhCCCcCEEEE--CCc-ccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 3445678 888643 222 1234567888888888766543 47888887653
No 191
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.04 E-value=61 Score=29.75 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCC
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 137 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 137 (411)
+.+.+.|+.++-+ ..+ ...+..++.+|-.++++.+.+. +++|.+|+..
T Consensus 28 ~~l~~~Gv~gi~v--~Gs-tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~ 78 (289)
T cd00951 28 EWLLSYGAAALFA--AGG-TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY 78 (289)
T ss_pred HHHHHcCCCEEEE--CcC-CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC
Confidence 3455689998744 222 2345678888888888766553 5888888753
No 192
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=56.83 E-value=51 Score=30.16 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=32.6
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~ 138 (411)
+..+.+.|+.|+-+ ..+ ......++.+|-+++++.+.+. .++|.+|+...
T Consensus 25 i~~l~~~Gv~Gi~~--~Gs-tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~ 77 (285)
T TIGR00674 25 IDFQIENGTDAIVV--VGT-TGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSN 77 (285)
T ss_pred HHHHHHcCCCEEEE--Ccc-CcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 34445689998743 211 1244677888888888876653 47888887654
No 193
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=56.24 E-value=1.5e+02 Score=28.42 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 88 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 88 ~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
.+.+.|+..|.+ .+. .| ..+++++.++++..++ .++++.+|++++.
T Consensus 153 ~~~~~Ga~~I~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 153 AAEEAGADRVRF-CDT---VG--ILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHhCCCCEEEE-ecc---CC--CCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 344678887654 221 23 4678888888887664 4899999999875
No 194
>PRK12999 pyruvate carboxylase; Reviewed
Probab=55.80 E-value=1.6e+02 Score=32.93 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=63.6
Q ss_pred cCChHHH-HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEE--EEEeeecCC-----Cccc-hHHHHH
Q 015182 19 WEGFPSG-TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDV--GFWGGLVPE-----NAYN-ASALEA 88 (411)
Q Consensus 19 ~~~~~~~-~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~-----~~~~-~~~~~~ 88 (411)
.+++... .+.+...|+..++-+- . ..+.+.++...+..+... .+.. .+.+.+.+. +.+. ++-.++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd-~----lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFD-S----LNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEec-c----CChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 4444444 7889999999998753 1 123455555544443222 2222 222211121 1111 233445
Q ss_pred HHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 89 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 89 ~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
+.+.|+..|.+ -+. .| .++++...++++..++ .++++.+|++++..
T Consensus 700 l~~~Ga~~i~i-kDt---~G--~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~G 746 (1146)
T PRK12999 700 LEKAGAHILAI-KDM---AG--LLKPAAAYELVSALKEEVDLPIHLHTHDTSG 746 (1146)
T ss_pred HHHcCCCEEEE-CCc---cC--CCCHHHHHHHHHHHHHHcCCeEEEEeCCCCc
Confidence 56789887654 221 23 5678888888888764 58999999998753
No 195
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.02 E-value=75 Score=29.54 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecCCc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~~ 138 (411)
++.+++.|+.|+-+ ..+ ...+..++.+|-+++++.+.+ -+++|.+|+...
T Consensus 35 v~~li~~Gv~Gi~v--~Gs-tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~ 87 (309)
T cd00952 35 VERLIAAGVDGILT--MGT-FGECATLTWEEKQAFVATVVETVAGRVPVFVGATTL 87 (309)
T ss_pred HHHHHHcCCCEEEE--Ccc-cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC
Confidence 34455789998743 222 234567888888888876653 348888888754
No 196
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=54.98 E-value=17 Score=31.46 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=59.5
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC---ccchHHHHHHHHCC
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---AYNASALEALLNAG 93 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g 93 (411)
...+++....+.+..+|+.+++-.+ ..++...+...+ ..+.+....++.... .....++++.++.|
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p----------~~v~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~G 82 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNP----------CFVPLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIADG 82 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcH----------HHHHHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcC
Confidence 4566778888999999999998654 123333222222 223333322221111 12345677788899
Q ss_pred ceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 94 VLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 94 ~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
++.+.+.+.++.. .+....-.+++.++.+.++ |+++.+
T Consensus 83 Adevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 83 ADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred CCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 9999887765421 1222223456777777665 777766
No 197
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.70 E-value=1e+02 Score=28.11 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
++.+.+.|+.|+-+ ... ...+..++.+|-+++++.+.+..-.|.+++..
T Consensus 26 i~~l~~~Gv~Gl~~--~Gs-tGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~ 74 (279)
T cd00953 26 CENLISKGIDYVFV--AGT-TGLGPSLSFQEKLELLKAYSDITDKVIFQVGS 74 (279)
T ss_pred HHHHHHcCCcEEEE--ccc-CCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc
Confidence 34455789998743 222 23456789999999988777655557777654
No 198
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=53.13 E-value=1.8e+02 Score=26.42 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=57.6
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHHHHHHHhc--CCceEEEEEeeecCCC-ccchHHHHHHHHC
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEK--RIYVDVGFWGGLVPEN-AYNASALEALLNA 92 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 92 (411)
-+.+.+.+-.+..+..|+..+.-.+ .+.. ..-+.+..++..+.... ...+.+. .+....+ .+.++..+...+.
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~G-stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi--~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLG-TTGEAPTLTDEERKEVIEAVVEAVAGRVPVI--AGVGANSTREAIELARHAEEA 91 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EecCCccHHHHHHHHHHHHHc
Confidence 3445566667778889999998776 2221 11222222222222211 1223332 2322222 2233444455568
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH-hCCCcEEEecC
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA-RYKRPLLVHAE 136 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~-~~g~~v~~H~~ 136 (411)
|++++-+.. + .+...+++++.+-++... ..++|+.++-.
T Consensus 92 Gad~v~v~p-P----~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 92 GADGVLVVP-P----YYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred CCCEEEECC-C----cCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 999986633 2 122346666666655544 46899998744
No 199
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=52.35 E-value=85 Score=28.75 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~~~ 139 (411)
++.+.+.|+.++-+. .. ...+..++.+|-.++++.+.+ -+.+|.+++...+
T Consensus 28 i~~l~~~Gv~gl~~~--Gs-tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s 81 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVL--GS-TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANS 81 (289)
T ss_dssp HHHHHHTTSSEEEES--ST-TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS
T ss_pred HHHHHHcCCCEEEEC--CC-CcccccCCHHHHHHHHHHHHHHccCceEEEecCcchh
Confidence 344557899987542 21 123456788888888777654 4578888876643
No 200
>PLN02417 dihydrodipicolinate synthase
Probab=52.23 E-value=74 Score=29.06 Aligned_cols=49 Identities=8% Similarity=-0.022 Sum_probs=32.5
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecCCc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEME 138 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~~ 138 (411)
+.+.+.|+.|+-+ ... ...++.++.+|-+++++.+.+ -.++|.+++...
T Consensus 29 ~~l~~~Gv~Gi~~--~Gs-tGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 29 NMQIENGAEGLIV--GGT-TGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred HHHHHcCCCEEEE--Ccc-CcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 3455689998744 222 134567888888888877664 347888887754
No 201
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=52.10 E-value=18 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=23.9
Q ss_pred eecccccCCCCCCccCChHHHHHHHHcCCceeEecC
Q 015182 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 40 (411)
Q Consensus 5 ID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~ 40 (411)
||.|+|....-......+....+.|.+.|++++.-.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iT 36 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAIT 36 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEc
Confidence 799999864312233456677789999999988643
No 202
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=51.74 E-value=93 Score=29.67 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=39.9
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecC
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 136 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 136 (411)
.++.++.+++..-..+-+ ..+...+|. .++.++|+++.+.|+++|++|..--.
T Consensus 188 DL~~veal~DENT~Aivv-iNP~NPcGn-Vys~~HL~kiae~A~klgi~vIaDEV 240 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVV-INPNNPCGN-VYSEDHLKKIAETAKKLGIMVIADEV 240 (447)
T ss_pred chHHHHHhhccCeeEEEE-eCCCCCCcc-cccHHHHHHHHHHHHHhCCeEEehhh
Confidence 467888888877666543 455544554 67999999999999999999987543
No 203
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=51.11 E-value=2e+02 Score=26.37 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=55.9
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHH----HHHHHHHHHhcCCceEEEEEeeecCC-CccchHHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTE----TLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLN 91 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (411)
+.+.+.+-.+..+..||..+.-.+ .+.. ..-+.+ .++...+..++ .+.+. .+.... ..+.++..+...+
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~G-s~GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi--~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVG-TTGESPTLTHEEHEELIRAVVEAVNG--RVPVI--AGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC-cCCccccCCHHHHHHHHHHHHHHhCC--CCcEE--eecCCchHHHHHHHHHHHHH
Confidence 344555666778889999998665 2211 111222 22222222222 22222 233222 2233444555567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhCCCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 135 (411)
.|++++-+... .+...+++++.+-++. +...++++.+.-
T Consensus 95 ~G~d~v~~~pP-----~~~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 95 AGADGALVVTP-----YYNKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred cCCCEEEECCC-----cCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 89999866431 1223456666666655 445689998873
No 204
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=50.20 E-value=86 Score=28.52 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 139 (411)
++.+.+.|+.++-+ ... ......++.+|-+++++.+.+. .++|.+|+....
T Consensus 24 i~~l~~~Gv~gi~~--~Gs-tGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 77 (281)
T cd00408 24 VEFLIEAGVDGLVV--LGT-TGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANS 77 (281)
T ss_pred HHHHHHcCCCEEEE--CCC-CcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCcc
Confidence 34455679998743 222 1344577888888888877653 588888887643
No 205
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=49.60 E-value=1.8e+02 Score=26.95 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=56.7
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHH----HHHHHhcCCceEEEEEeeecC-CCccchHHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKL----KVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLN 91 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (411)
+.+.+.+-....+..||..+.-.+ .+.. ..-+.+..++ ..+..+++ +.+ ..+... ...+.+...+...+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~G-stGE~~~Lt~eEr~~v~~~~~~~~~gr--vpv--i~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMG-TFGECATLTWEEKQAFVATVVETVAGR--VPV--FVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-ccccchhCCHHHHHHHHHHHHHHhCCC--CCE--EEEeccCCHHHHHHHHHHHHH
Confidence 344555666777899999998776 2221 1112222222 22222222 222 222222 22233444455556
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH-hC-CCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA-RY-KRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~-~~-g~~v~~H~ 135 (411)
.|++++-+... .+...+.+++.+-++... .. ++|+.+.-
T Consensus 102 ~Gad~vlv~~P-----~y~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 102 LGADGTMLGRP-----MWLPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred hCCCEEEECCC-----cCCCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 89999866432 122346677777776654 45 58998863
No 206
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=48.56 E-value=23 Score=33.29 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
..+++.++.|++++++.+..++... ...-+++.++++.|+++|+|+.+.+
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~~E--~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSEES--RRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHH--HHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4577888999988877654432111 1123567788899999999999864
No 207
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=48.13 E-value=90 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~ 138 (411)
++.+.+.|+.++-+. . + ......++.+|.+++++.+.+. .+++.+++...
T Consensus 27 i~~l~~~Gv~gl~v~-G-s-tGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 79 (284)
T cd00950 27 IEFQIENGTDGLVVC-G-T-TGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN 79 (284)
T ss_pred HHHHHHcCCCEEEEC-C-C-CcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCc
Confidence 344556899887442 2 1 1234577889888888877654 47788887654
No 208
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=47.91 E-value=1.6e+02 Score=28.04 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 88 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 88 ~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
.+.+.|+..|.+ .+. .| ..+++++.++++..++ .++++.+|++++.
T Consensus 150 ~~~~~Ga~~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 150 VAAEAGADRFRF-ADT---VG--ILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHcCcCEEEE-ccc---CC--CCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 344678877644 221 23 4678888888887664 4799999999875
No 209
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.03 E-value=2.3e+02 Score=25.98 Aligned_cols=107 Identities=13% Similarity=-0.026 Sum_probs=55.7
Q ss_pred ccCChHHHHHHHHcCC-ceeEecCCCCCCC-CCCCHHHHHHH----HHHHhcCCceEEEEEeeecC-CCccchHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGG-ITTLIDMPLNSDP-STISTETLKLK----VDAAEKRIYVDVGFWGGLVP-ENAYNASALEALL 90 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~G-vTtv~d~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (411)
+.+.+..-.+..+..| ++.+.-.+ .+.. ..-+.+.-++. .+..++ .+.+.. +... ...+.++..+...
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~G-stGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~--gv~~~~t~~~i~la~~a~ 93 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGG-STGENFMLSTEEKKEIFRIAKDEAKD--QIALIA--QVGSVNLKEAVELGKYAT 93 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECC-cccccccCCHHHHHHHHHHHHHHhCC--CCcEEE--ecCCCCHHHHHHHHHHHH
Confidence 3444555666778899 99998776 2221 11222222222 222222 233322 2221 1223344455556
Q ss_pred HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhC-CCcEEEe
Q 015182 91 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 134 (411)
Q Consensus 91 ~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~-g~~v~~H 134 (411)
+.|++++-+... .+...+.+++.+-++.. ... ++++.+.
T Consensus 94 ~~Gad~v~v~~P-----~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 94 ELGYDCLSAVTP-----FYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred HhCCCEEEEeCC-----cCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 789999876432 12234667777766665 344 6888865
No 210
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=46.79 E-value=50 Score=29.75 Aligned_cols=108 Identities=8% Similarity=0.047 Sum_probs=59.2
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC--CC-c-cchHHHHHHHHC
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP--EN-A-YNASALEALLNA 92 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~ 92 (411)
...+++...++.+..+|+.+++-.+ .. ++...........+-+....+... .. . .....+.++++.
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p-~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~ 102 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHK-GI---------VRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRM 102 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCc-ch---------hhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHC
Confidence 4567788899999999999998765 11 111111111111121111001111 11 1 123457788899
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecC
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 136 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 136 (411)
|+..+.+...... .+. .--.+++.++.+.++++|+++.+...
T Consensus 103 Ga~~v~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 103 GADAVSIHVNVGS-DTE-WEQIRDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred CCCEEEEEEecCC-chH-HHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 9998877543221 010 01125677888888999999998543
No 211
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=46.47 E-value=88 Score=28.33 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=60.7
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCc--eEEEEEeeecC--CCccchHHHHHHHHC
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLVP--ENAYNASALEALLNA 92 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~ 92 (411)
...+++...++.++.+|+.+++-.+ . .++...+....... +.+....++.+ ........++++++.
T Consensus 36 ~~~~d~~~~~~~a~~~~~~av~v~~-~---------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~ 105 (267)
T PRK07226 36 DGLVDIRDTVNKVAEGGADAVLMHK-G---------LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKL 105 (267)
T ss_pred cCcCCHHHHHHHHHhcCCCEEEeCH-h---------HHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHc
Confidence 3567888899999999999998654 1 11111111111111 12110111111 112234567788899
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
|++.+++.+...... ...-.+++.++.+.++++|+++.++.
T Consensus 106 Gad~v~~~~~~g~~~--~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 106 GADAVSVHVNVGSET--EAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred CCCEEEEEEecCChh--HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 999887765432110 01124577788888999999999864
No 212
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=45.33 E-value=69 Score=28.73 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 146 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~ 146 (411)
.+....|++.+=+.+ ..+++++++++++.|+++||.+.+-+++....+.++.
T Consensus 123 ~~Ar~~GADavLLI~--------~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~ 174 (254)
T COG0134 123 YEARAAGADAVLLIV--------AALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK 174 (254)
T ss_pred HHHHHcCcccHHHHH--------HhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh
Confidence 333445777654433 3678999999999999999999988887766555543
No 213
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=45.08 E-value=1e+02 Score=28.39 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH---hCCCcEEEecCCc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA---RYKRPLLVHAEME 138 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~---~~g~~v~~H~~~~ 138 (411)
+.+.+.|+.++-+ ..+ ...+..++.+|-.++++.+. .-+.+|.+|+...
T Consensus 28 ~~~~~~Gv~gi~v--~Gs-tGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~ 79 (294)
T TIGR02313 28 EFQIEGGSHAISV--GGT-SGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGAL 79 (294)
T ss_pred HHHHHcCCCEEEE--Ccc-CcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcc
Confidence 3445678888643 222 23456778888888777654 3347888887754
No 214
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=44.85 E-value=57 Score=29.34 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccch
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 142 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 142 (411)
++.+....|++++-+.. ..++++.|.++++.|+++|+.+.+-+++....+
T Consensus 123 QI~eA~~~GADaVLLI~--------~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~ 172 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIA--------AILSDDQLEELLELAHSLGLEALVEVHNEEELE 172 (254)
T ss_dssp HHHHHHHTT-SEEEEEG--------GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHH
T ss_pred HHHHHHHcCCCEeehhH--------HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHH
Confidence 56666678999987654 267889999999999999999998888765543
No 215
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=44.50 E-value=47 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHCCceEEEEeccCCCC--------CCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 85 ALEALLNAGVLGLKSFMCPSGI--------NDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
....|++.|++++++.|.++++ .|.++-+ ....+.++|+++|.||..-
T Consensus 305 qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~T--AVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 305 QAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGT--AVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred HHHHHHHccCceeEeccccCceeeeceeeeccCCccc--chhhHHHHHHhcCCceeec
Confidence 3455678899999999987542 4445433 4778999999999999874
No 216
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=44.41 E-value=1.8e+02 Score=25.39 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=62.3
Q ss_pred CCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC---ccchHHHHHHHHC
Q 015182 16 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---AYNASALEALLNA 92 (411)
Q Consensus 16 ~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 92 (411)
..+.+++...++.+..+|+-+++-.| ..+....+..++ ..+.+....++.-.. ...+.+..+..+.
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p----------~~v~~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNP----------SYVPLAKELLKG-TEVRICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCH----------HHHHHHHHHcCC-CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 34667888899999999999998655 122222222222 345554443332221 1235567777889
Q ss_pred CceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 93 GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 93 g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
|++-+.+.++++.. .+....-.+++.++.+.++ |+++.+
T Consensus 83 GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv 122 (211)
T TIGR00126 83 GADEVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV 122 (211)
T ss_pred CCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE
Confidence 99999887765411 1222223456777777664 777776
No 217
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.33 E-value=2.5e+02 Score=25.61 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=56.2
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCC-CCCHH----HHHHHHHHHhcCCceEEEEEeeecCCC-ccchHHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPS-TISTE----TLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLN 91 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (411)
+.+.+.+-.+..+..||..+.-.+ .+... .-+.+ .++...+..++ .+.+. .+....+ .+.++..+...+
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~G-stGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi--~gv~~~s~~~~i~~a~~a~~ 91 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVG-TTGESPTLSHEEHKKVIEFVVDLVNG--RVPVI--AGTGSNATEEAISLTKFAED 91 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-cCcccccCCHHHHHHHHHHHHHHhCC--CCeEE--EeCCCccHHHHHHHHHHHHH
Confidence 344455666677889999998765 22111 11222 22222222233 23332 2332222 233444455567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhCCCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 135 (411)
.|++++-+...+ +...+++++.+-++. ++..++++.+.-
T Consensus 92 ~Gad~v~v~pP~-----y~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 92 VGADGFLVVTPY-----YNKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred cCCCEEEEcCCc-----CCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 899998664321 223456777666655 455789998764
No 218
>PRK15452 putative protease; Provisional
Probab=44.26 E-value=3.3e+02 Score=26.90 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=34.0
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCC---CCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGIN---DFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++.+..+++.||+.| |+...... ....++.++++++++.||++|..+.+-
T Consensus 12 ~~e~l~aAi~~GADaV--Y~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 12 TLKNMRYAFAYGADAV--YAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CHHHHHHHHHCCCCEE--EECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3556777788899886 34322110 001346688999999999999888765
No 219
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=43.92 E-value=1.2e+02 Score=28.00 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=31.0
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecC
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 136 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 136 (411)
+.+.+.|+.|+-+ ..+ ...+..++.+|-.++++.+.+ -.++|.+++.
T Consensus 35 ~~l~~~Gv~Gi~~--~Gs-tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 35 EWLAPYGAAALFA--AGG-TGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred HHHHHcCCCEEEE--CcC-CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 3445689998743 222 234567888888888876654 2488888875
No 220
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=43.54 E-value=1.9e+02 Score=27.56 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccCCCCCCc-eEEEEcCC-ChHHHHHHHHHH-hHCCCCEEEEcccccccccccccCCCC
Q 015182 163 TRPPSWEEAAIRELLTVAKDTRTDGPAEGA-HLHIVHLS-DASSSLDLLMEA-KTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 163 ~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~i~h~~-~~~~~~~~i~~~-~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
.+|...+...+..+.+.++.. .|. +.++.|++ +. ..++.++++ ++.|+.+.. ++++|+.++.
T Consensus 166 ~~~~~~~l~~~~~~a~~~~~~------~g~~~~i~vH~~~~~-~~l~~v~~~l~~~Gv~~~~-~~~~H~~~~~------- 230 (388)
T PRK10657 166 SQPTVEELARLAAEARVGGLL------SGKAGIVHVHMGDGK-KGLQPLFELLENTDIPISQ-FLPTHVNRNE------- 230 (388)
T ss_pred CCCCHHHHHHHHHHHHHHHHh------cCCCCEEEEEeCCch-HHHHHHHHHHHhcCCCcce-eeCcccCCCH-------
Confidence 455555555555544444332 132 25677988 45 677777444 577887775 8888865422
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
...+..++.+++|....+.
T Consensus 231 ------------~~~~~~~~~~~~G~~~~v~ 249 (388)
T PRK10657 231 ------------PLFEQALEFAKKGGVIDLT 249 (388)
T ss_pred ------------HHHHHHHHHHHcCCeEEEe
Confidence 1223456667778766554
No 221
>PRK08227 autoinducer 2 aldolase; Validated
Probab=42.36 E-value=31 Score=31.18 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
..+++.++.|++++++.+...+... .-.-+.+.++.+.|+++|+|+.+
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E--~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYE--HQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHH--HHHHHHHHHHHHHHHHhCCcEEE
Confidence 4577888999999887665432111 11224567888899999999987
No 222
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.23 E-value=2e+02 Score=26.22 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=56.2
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCC-CCHHHHHH----HHHHHhcCCceEEEEEeeecCCC-ccchHHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPST-ISTETLKL----KVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLN 91 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (411)
..+.+.+-.+..+..|+..+.-.+ .+.... -+.+...+ ..+..++ .+.+.. +....+ .+.++..+...+
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G-stGE~~~Lt~~Er~~l~~~~~~~~~~--~~~vi~--gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG-STGEFYSLTDEERKELLEIVVEAAAG--RVPVIA--GVGANSTEEAIELARHAQD 94 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS-TTTTGGGS-HHHHHHHHHHHHHHHTT--SSEEEE--EEESSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHHHHHHccC--ceEEEe--cCcchhHHHHHHHHHHHhh
Confidence 344455666778899999998776 222111 12222222 2222233 333322 232222 233445555667
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhCCCcEEEecC
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHAE 136 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~~ 136 (411)
.|++++-+.. | .+...+.+.+.+-++. +..-++++.++-.
T Consensus 95 ~Gad~v~v~~-P----~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 95 AGADAVLVIP-P----YYFKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp TT-SEEEEEE-S----TSSSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred cCceEEEEec-c----ccccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 8999986643 2 1223466666665555 4456799998754
No 223
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.97 E-value=2.7e+02 Score=25.34 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=58.7
Q ss_pred CCCccCChHHHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHHHHHHH-hcCCceEEEEEeeecCCC-ccchHHHHHHHH
Q 015182 15 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAA-EKRIYVDVGFWGGLVPEN-AYNASALEALLN 91 (411)
Q Consensus 15 ~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (411)
+.-+.+.+.+-.+..+..||..+.-.+ .+.. ..-+.+.-++..+.. +....+ ..+....+ .+.++..+...+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~G-stGE~~~Lt~eEr~~l~~~~~~~~~~v----i~gvg~~~~~~ai~~a~~a~~ 89 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAG-TTGLGPSLSFQEKLELLKAYSDITDKV----IFQVGSLNLEESIELARAAKS 89 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcc-cCCCcccCCHHHHHHHHHHHHHHcCCE----EEEeCcCCHHHHHHHHHHHHH
Confidence 333445566667778899999998876 2221 112222222222222 111122 22222222 233444455567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
.|++++-+...+ .+...+++.+.+-++...+ ++|+.+.-
T Consensus 90 ~Gad~v~v~~P~----y~~~~~~~~i~~yf~~v~~-~lpv~iYn 128 (279)
T cd00953 90 FGIYAIASLPPY----YFPGIPEEWLIKYFTDISS-PYPTFIYN 128 (279)
T ss_pred cCCCEEEEeCCc----CCCCCCHHHHHHHHHHHHh-cCCEEEEe
Confidence 899998654321 1111367888888888777 99999873
No 224
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=41.14 E-value=2.4e+02 Score=25.31 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=32.5
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH-hCCCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA-RYKRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~-~~g~~v~~H~~~~~ 139 (411)
.++.+.|+..|.+ .+. .| ...++.+.+++...+ ..++++.+|++++.
T Consensus 146 ~~~~~~G~~~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 146 EVAQEAGADRLRF-ADT---VG--ILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHCCCCEEEe-CCC---CC--CCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3445678887644 221 23 567888888888766 45789999999864
No 225
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=40.88 E-value=29 Score=33.35 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEec-CCcccchhh
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERH 144 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~ 144 (411)
.++.++++++++.|+++|++|.+|+ +....+...
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a 244 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDTPEHVAEA 244 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHH
Confidence 3578999999999999999999999 455544433
No 226
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.86 E-value=2e+02 Score=26.61 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 139 (411)
+.+.+.|++++-+ ..+ ...++.++.+|-+++++.+.+. .+||.+++....
T Consensus 32 ~~li~~Gv~gi~~--~Gt-tGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~ 84 (299)
T COG0329 32 EFLIAAGVDGLVV--LGT-TGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNS 84 (299)
T ss_pred HHHHHcCCCEEEE--CCC-CccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCc
Confidence 3345688888733 222 2345678888888888877653 367888877643
No 227
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=40.48 E-value=52 Score=29.62 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=34.5
Q ss_pred hHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 83 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 83 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
...+++..+.|++++...+...+... ...-+.+.++++.|+++|+|+.+++.-
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~e--~~~i~~~~~v~~~a~~~Gmp~v~~~Yp 152 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSETE--REMIENISQVVEDAHELGMPLVAWAYP 152 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcch--HHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 34567777889887665443222111 112356667888899999999998754
No 228
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=40.42 E-value=2.3e+02 Score=25.64 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-C---CcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-K---RPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g---~~v~~H~~~~~ 139 (411)
++++.+.|+..|.+ .+. .| ..+++.+..+++..++. + +++.+|++++.
T Consensus 149 ~~~~~~~G~~~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 149 VEAAIEAGATTINI-PDT---VG--YLTPEEFGELIKKLKENVPNIKVPISVHCHNDL 200 (268)
T ss_pred HHHHHHcCCCEEEE-CCC---CC--CCCHHHHHHHHHHHHHhCCCCceeEEEEecCCc
Confidence 34455678887654 221 23 56788899888887763 4 88999999864
No 229
>PRK08444 hypothetical protein; Provisional
Probab=40.26 E-value=1.8e+02 Score=27.74 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=61.3
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCC---------CccchHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPE---------NAYNASALE 87 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~ 87 (411)
+.|.+....+.+...|+|.++-.. +..|. ..++.+.+..+..+.. ..+++..+ ++. .....+.+.
T Consensus 81 s~eeI~~~a~~a~~~G~~ei~iv~-G~~p~-~~~e~y~e~ir~Ik~~~p~i~i~a~---s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 81 SHEEILEIVKNSVKRGIKEVHIVS-AHNPN-YGYEWYLEIFKKIKEAYPNLHVKAM---TAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec-cCCCC-CCHHHHHHHHHHHHHHCCCceEeeC---CHHHHHHHHHHcCCCHHHHHH
Confidence 345667777888899999998776 44443 2455555555544432 23444321 111 111224556
Q ss_pred HHHHCCceEEEE----eccC---CCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 88 ALLNAGVLGLKS----FMCP---SGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 88 ~~~~~g~~~ik~----~~~~---~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
.+++.|++.+-- ++++ ...+. ...+.+.+..+.+.|++.|+++..
T Consensus 156 ~LkeAGl~~~~g~~aEi~~~~vr~~I~p-~k~~~~~~~~i~~~a~~~Gi~~~s 207 (353)
T PRK08444 156 DMLEYGVDSMPGGGAEIFDEEVRKKICK-GKVSSERWLEIHKYWHKKGKMSNA 207 (353)
T ss_pred HHHHhCcccCCCCCchhcCHHHHhhhCC-CCCCHHHHHHHHHHHHHcCCCccc
Confidence 677777654310 0000 00010 134568888999999999999853
No 230
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.89 E-value=2.9e+02 Score=24.78 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
+.++.+.+.|..++-++..+.. .-.+..+...++++.+.++++|+.+..+.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPH-AFAPDLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCcc-ccccccCchHHHHHHHHHHHcCCeEEEec
Confidence 4566667789999988643221 00112345678888888999999998764
No 231
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=38.86 E-value=3e+02 Score=24.86 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=57.4
Q ss_pred ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEEEe
Q 015182 21 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSF 100 (411)
Q Consensus 21 ~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~ 100 (411)
+...-.+.+..+|...+.-+. .......+.+.++...+.. ...+=..- -+++ ..++.+....|++.+-+.
T Consensus 71 ~~~~~A~~~~~~GA~aisvlt-e~~~f~g~~~~l~~v~~~v--~iPvl~kd--fi~~-----~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLT-DERFFQGSLEYLRAARAAV--SLPVLRKD--FIID-----PYQIYEARAAGADAILLI 140 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEec-ccccCCCCHHHHHHHHHhc--CCCEEeee--ecCC-----HHHHHHHHHcCCCEEEEE
Confidence 344555666777777765433 1111113344455443321 11111100 0111 125677778899998774
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 101 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
.. .++++.++++++.++++|+.+.+=+++..
T Consensus 141 ~~--------~l~~~~l~~li~~a~~lGl~~lvevh~~~ 171 (260)
T PRK00278 141 VA--------ALDDEQLKELLDYAHSLGLDVLVEVHDEE 171 (260)
T ss_pred ec--------cCCHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 32 24678999999999999999887666644
No 232
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.83 E-value=3.1e+02 Score=25.12 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=56.1
Q ss_pred CccCChHHHHHHHHc-CCceeEecCCCCCCC-CCCCHHHH----HHHHHHHhcCCceEEEEEeeecCC-CccchHHHHHH
Q 015182 17 TEWEGFPSGTKAAAA-GGITTLIDMPLNSDP-STISTETL----KLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEAL 89 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~-~GvTtv~d~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (411)
-+.+.+.+-.+..+. .||..+.-.+ .+.. ..-+.+.- +...+...++ +.+. .+.... ..+.++..+..
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~G-stGE~~~Ls~eEr~~~~~~~~~~~~~~--~~vi--agvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGG-STGEAFLLSTEEKKQVLEIVAEEAKGK--VKLI--AQVGSVNTAEAQELAKYA 95 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECC-CccccccCCHHHHHHHHHHHHHHhCCC--CCEE--ecCCCCCHHHHHHHHHHH
Confidence 344555566677788 9999998776 2221 11122222 2222222222 2222 222221 22333444555
Q ss_pred HHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhCCCcEEEec
Q 015182 90 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 135 (411)
Q Consensus 90 ~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 135 (411)
.+.|++++-+...+ +...+++.+.+-++. +...++|+.+.-
T Consensus 96 ~~~Gad~v~v~~P~-----y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 96 TELGYDAISAVTPF-----YYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred HHcCCCEEEEeCCc-----CCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67899998764321 223355666665555 445688998874
No 233
>PRK07360 FO synthase subunit 2; Reviewed
Probab=37.95 E-value=2.1e+02 Score=27.45 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEee-----ec-CCCccchHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGG-----LV-PENAYNASALEALL 90 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~~~~~~ 90 (411)
+.|.+....+.+...|++.+.-.. +..|.....+.+.+..+..+.. ..+.+..... +. .......+.+.+++
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 445667778888999999998775 5455433345555554444432 1233221100 00 00111234577888
Q ss_pred HCCceEEEEeccCCCC------CCCC-CCCHHHHHHHHHHHHhCCCcEEE
Q 015182 91 NAGVLGLKSFMCPSGI------NDFP-MTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 91 ~~g~~~ik~~~~~~~~------~~~~-~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+.|++.+-- .+.... .-.+ ..+.+...+.++.|++.|+++..
T Consensus 171 eAGld~~~~-t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 171 DAGLDSMPG-TAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred HcCCCcCCC-cchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 888876510 000000 0011 34666778999999999998864
No 234
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.67 E-value=2e+02 Score=26.30 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHC-CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecCCc
Q 015182 86 LEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~~-g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~~ 138 (411)
++.+.+. |+.|+-+ ..+ ...++.++.+|-.++++.+.+ -.++|.+++...
T Consensus 27 i~~l~~~~Gv~gi~~--~Gs-tGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 27 VDYLIEKQGVDGLYV--NGS-TGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred HHHHHhcCCCCEEEE--CcC-CcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 3445567 8888744 222 234467888888888876654 346788877653
No 235
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.44 E-value=2.4e+02 Score=24.71 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CC-CcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 139 (411)
+.+.+.|+..|.+ .+. ....+++.+..+++..++ .+ +++.+|++++.
T Consensus 144 ~~~~~~g~~~i~l-~Dt-----~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~ 192 (237)
T PF00682_consen 144 EALAEAGADIIYL-ADT-----VGIMTPEDVAELVRALREALPDIPLGFHAHNDL 192 (237)
T ss_dssp HHHHHHT-SEEEE-EET-----TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTT
T ss_pred HHHHHcCCeEEEe-eCc-----cCCcCHHHHHHHHHHHHHhccCCeEEEEecCCc
Confidence 3444578887754 222 125678888888888774 45 89999999864
No 236
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=37.28 E-value=1.7e+02 Score=27.96 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=62.9
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCCCccchHHHHHHHHCCceE
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLG 96 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 96 (411)
+.+.+....+.+...|++.++-.+ +..|.....+.+.+..+..+.. ..+.+.. .+. ..+.+..+++.|+..
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei----~~l---t~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFSSLAIEV----QPL---NEEEYKKLVEAGLDG 175 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCcccccc----ccC---CHHHHHHHHHcCCCE
Confidence 345667777888899999998765 4445444455555544433321 1122111 111 234678888899998
Q ss_pred EEEeccCCC------CC-CCCCCCHHHHHHHHHHHHhCCCc-EEE
Q 015182 97 LKSFMCPSG------IN-DFPMTNASHIKEGLSVLARYKRP-LLV 133 (411)
Q Consensus 97 ik~~~~~~~------~~-~~~~~~~~~l~~~~~~a~~~g~~-v~~ 133 (411)
+.++..... .+ .-+..+.+.-.+.++.|++.|+. +.+
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~ 220 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGI 220 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeece
Confidence 877664321 01 00123556667788889999987 554
No 237
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.02 E-value=59 Score=30.48 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHHHCCceEEEEeccCCCC--------CCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 84 SALEALLNAGVLGLKSFMCPSGI--------NDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+....|.+.|++++|+-+.+++. -|.|++ .-+.++.+.|+++|.+|..
T Consensus 163 e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQl--tAV~~~a~~a~~~gvpiIA 218 (346)
T PRK05096 163 EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQL--SAVIECADAAHGLGGQIVS 218 (346)
T ss_pred HHHHHHHHcCCCEEEEcccCCccccCccccccChhHH--HHHHHHHHHHHHcCCCEEe
Confidence 45566778999999999987642 233332 3466777788888888776
No 238
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=36.33 E-value=2.1e+02 Score=27.40 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=62.8
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCCCccchHHHHHHHHCCceE
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLG 96 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 96 (411)
+.+.+....+.+.+.|++.++-.+ +..|.....+.+.+..+..+.. ..+.+. . .+. ..+.+..+++.|+..
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~p~i~i~--~--g~l---t~e~l~~Lk~aGv~r 176 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLT-GEHEAKVGVDYIRRALPIAREYFSSVSIE--V--QPL---SEEEYAELVELGLDG 176 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCCceec--c--CCC---CHHHHHHHHHcCCCE
Confidence 445566777788889999997654 3334334455555544433321 112221 1 111 235678888899998
Q ss_pred EEEeccCCC------CC--CCCCCCHHHHHHHHHHHHhCCCc-EEE
Q 015182 97 LKSFMCPSG------IN--DFPMTNASHIKEGLSVLARYKRP-LLV 133 (411)
Q Consensus 97 ik~~~~~~~------~~--~~~~~~~~~l~~~~~~a~~~g~~-v~~ 133 (411)
+-+++...+ .+ + +..+.+...+.++.|.+.|+. |.+
T Consensus 177 ~~i~lET~~~~~~~~i~~~g-~~h~~~~rl~~i~~a~~aG~~~v~~ 221 (371)
T PRK09240 177 VTVYQETYNPATYAKHHLRG-PKRDFEYRLETPERAGRAGIRKIGL 221 (371)
T ss_pred EEEEEecCCHHHHHHhCcCC-CCCCHHHHHHHHHHHHHcCCCeece
Confidence 887765321 11 1 123567777788999999986 543
No 239
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=36.10 E-value=1e+02 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccc
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 141 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 141 (411)
++.+....|++++-+.+ ..++++.+.++++.|+++|+.+.+-+++....
T Consensus 116 QI~ea~~~GADavLLI~--------~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El 164 (247)
T PRK13957 116 QIREARAFGASAILLIV--------RILTPSQIKSFLKHASSLGMDVLVEVHTEDEA 164 (247)
T ss_pred HHHHHHHcCCCEEEeEH--------hhCCHHHHHHHHHHHHHcCCceEEEECCHHHH
Confidence 45555568999885533 35688899999999999999999887775543
No 240
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=35.92 E-value=56 Score=30.97 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHHHHCCceEEEEeccCCCCC--------CCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 85 ALEALLNAGVLGLKSFMCPSGIN--------DFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
....|.+.|++++|+-+.+.+.+ |.|+. --+.++.+.+++++.+|...
T Consensus 162 ~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~--tAv~~~a~~a~~~~v~iIAD 217 (352)
T PF00478_consen 162 GAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQL--TAVYECAEAARDYGVPIIAD 217 (352)
T ss_dssp HHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHH--HHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHcCCCEEEEeccCCcccccccccccCCcHH--HHHHHHHHHhhhccCceeec
Confidence 34456788999999999876432 44443 34677788888898888774
No 241
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.10 E-value=3.6e+02 Score=24.76 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCcc-----------chHHHHHHHH-CC
Q 015182 26 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY-----------NASALEALLN-AG 93 (411)
Q Consensus 26 ~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~g 93 (411)
++.|+..|+|+|.--+ ..-|-..+.+.-++..+.+....-.-=+-.+.+...+.+ ..++..++.+ -|
T Consensus 90 i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 90 IAQKVRSGVRSVMIDG-SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred HHHHHHcCCCEEEeCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC
Q ss_pred ceEEEEeccC--CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 94 VLGLKSFMCP--SGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 94 ~~~ik~~~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
++.+.+-++. +.+.+-+.++.+.|+++-+.. ++|+..|
T Consensus 169 vD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~---~vPLVLH 208 (284)
T PRK09195 169 IDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV---NIPLVLH 208 (284)
T ss_pred cCEEeeccCccccccCCCCcCCHHHHHHHHHHh---CCCeEEe
No 242
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.85 E-value=1.7e+02 Score=25.55 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=56.3
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEE
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 97 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 97 (411)
..++.....++.+++|++.+- ..+++ | ...+.++...+.......+.++- | |-. ..++++...+.|+..+
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iE-it~~~-~--~a~~~i~~l~~~~~~~p~~~vGa--G-TV~---~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIE-VTYTN-P--FASEVIKELVELYKDDPEVLIGA--G-TVL---DAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEE-EECCC-c--cHHHHHHHHHHHcCCCCCeEEee--e-eCC---CHHHHHHHHHcCCCEE
Confidence 345556677888999999984 33232 2 23445555543221111132321 1 222 2346778888999876
Q ss_pred EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc
Q 015182 98 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 140 (411)
Q Consensus 98 k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 140 (411)
- +| .+++ +++++++++|+++.-=+..+..
T Consensus 93 v---sP-------~~~~----~v~~~~~~~~i~~iPG~~T~~E 121 (213)
T PRK06552 93 V---SP-------SFNR----ETAKICNLYQIPYLPGCMTVTE 121 (213)
T ss_pred E---CC-------CCCH----HHHHHHHHcCCCEECCcCCHHH
Confidence 2 32 2343 4566788999999876666554
No 243
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=34.52 E-value=1.8e+02 Score=30.44 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhh
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 145 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 145 (411)
++.+....|++.|-+.. ..++++.|+++++.|+++|+.+.+-+++....+.++
T Consensus 125 QI~ea~~~GADavLLI~--------~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~ 177 (695)
T PRK13802 125 QIWEARAHGADLVLLIV--------AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAI 177 (695)
T ss_pred HHHHHHHcCCCEeehhH--------hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 44555567888876543 257889999999999999999998888776665554
No 244
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=34.19 E-value=2.8e+02 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=35.9
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccch
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 142 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 142 (411)
+.+....|++.+-+.. ..++++.|..+++.|+++|+.+.+-+++....+
T Consensus 196 I~eAr~~GADAVLLIa--------aiL~~~~L~~l~~~A~~LGme~LVEVH~~~Ele 244 (338)
T PLN02460 196 IYYARSKGADAILLIA--------AVLPDLDIKYMLKICKSLGMAALIEVHDEREMD 244 (338)
T ss_pred HHHHHHcCCCcHHHHH--------HhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 3444456777764433 257889999999999999999998888765443
No 245
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.15 E-value=3.7e+02 Score=24.57 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=56.0
Q ss_pred CccCChHHHHHHHHcC-CceeEecCCCCCCC-CCCCHHHHHHHHHHHhc--CCceEEEEEeeecCCC-ccchHHHHHHHH
Q 015182 17 TEWEGFPSGTKAAAAG-GITTLIDMPLNSDP-STISTETLKLKVDAAEK--RIYVDVGFWGGLVPEN-AYNASALEALLN 91 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~-GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 91 (411)
-+.+.+.+-.+..+.. |++.+.-.+ .+.. ..-+.+.-++..+.... ...+.+ ..+....+ .+.++..+...+
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~G-stGE~~~Lt~~Er~~~~~~~~~~~~~~~~v--iagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNG-STGEGFLLSVEERKQIAEIVAEAAKGKVTL--IAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECc-CCcCcccCCHHHHHHHHHHHHHHhCCCCeE--EeccCCCCHHHHHHHHHHHHH
Confidence 3445556666777888 999998776 2221 11222222222221111 122222 22322222 223344445567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHH-HhC-CCcEEEe
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL-ARY-KRPLLVH 134 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a-~~~-g~~v~~H 134 (411)
.|++++-+.. +. +...+++++.+-++.. +.. ++++.+.
T Consensus 95 ~Gad~v~~~~-P~----y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 95 LGYDAISAIT-PF----YYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred cCCCEEEEeC-CC----CCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8999986533 21 1234667777766664 456 7999886
No 246
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=33.96 E-value=1.7e+02 Score=25.68 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=57.2
Q ss_pred CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCc--eEE--EEEeee-cCCCccchHHHHHHHH
Q 015182 17 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDV--GFWGGL-VPENAYNASALEALLN 91 (411)
Q Consensus 17 ~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-~~~~~~~~~~~~~~~~ 91 (411)
...+++....+.+.++|+.+++-.+ . .++...+...+... +++ ....++ .........++.+..+
T Consensus 18 ~~~~d~~~~~~~~~~~g~~av~v~~-~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~ 87 (235)
T cd00958 18 PGLEDPEETVKLAAEGGADAVALTK-G---------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR 87 (235)
T ss_pred ccccCHHHHHHHHHhcCCCEEEeCh-H---------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH
Confidence 3456788889999999999998654 1 11111111111111 111 111111 1111223445777888
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
.|+.++.+.+...... ...-.+++.++.+.++++|+++.+
T Consensus 88 ~Ga~~v~~~~~~~~~~--~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 88 LGADAVGVTVYVGSEE--EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCCCEEEEEEecCCch--HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9999886654332100 011234777888888999999987
No 247
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.46 E-value=2.1e+02 Score=26.26 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecCCc
Q 015182 86 LEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEME 138 (411)
Q Consensus 86 ~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~~ 138 (411)
++.+++ .|+.|+-+ ... ...+..++.+|-.++++.+.+ -.++|.+++...
T Consensus 30 i~~l~~~~Gv~gi~v--~Gs-tGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~ 83 (293)
T PRK04147 30 VRFNIEKQGIDGLYV--GGS-TGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSV 83 (293)
T ss_pred HHHHHhcCCCCEEEE--CCC-ccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCC
Confidence 344566 78888743 222 123457788888877776554 247888877543
No 248
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=33.38 E-value=63 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.0
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCCCCCccc-----ccCCccEEEEcCCCe
Q 015182 312 YGVTLEQLASWWSERPAKLAGQVSKGAIA-----IGNHADLVVWEPEAE 355 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~~~G~I~-----~G~~ADlvv~d~~~~ 355 (411)
.+++.+++-+.-..-.|+...+.+.|.+. +|..|++-|||.++.
T Consensus 12 ~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~ 60 (90)
T TIGR03221 12 VDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVAGEYANYSIFDVESN 60 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEecCCceeEEEEEcCCH
Confidence 35777777777777777777774456543 899999999998753
No 249
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.24 E-value=61 Score=30.60 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=35.4
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCC---CCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFP---MTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.+.++++.|++++|+.+.+.+. ... ....+.+.++.+.|++.|+|+.+.
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d-~~~~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPD-EDDAINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCC-cchHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 3567788999999998776531 111 112346889999999999999886
No 250
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=33.01 E-value=1.2e+02 Score=26.12 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHcCCceeEec---CCC-CCCCCCCCHHHHHHHHHHHhcCCceEEEEEe--eecCCCccch----HHHHHHHHCC
Q 015182 24 SGTKAAAAGGITTLID---MPL-NSDPSTISTETLKLKVDAAEKRIYVDVGFWG--GLVPENAYNA----SALEALLNAG 93 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~g 93 (411)
.....|.++|..-+-- +.. +..| +...++...+ .....+++..-. +-..-+.+++ .++..+.+.|
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTP---S~g~i~~~~~--~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~G 85 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTP---SLGLIRQARE--AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELG 85 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B------HHHHHHHHH--HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCc---CHHHHHHHHh--hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence 4567788999888742 110 1222 3445554443 222334332211 0000012233 3444566789
Q ss_pred ceEEEEec-cCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 94 VLGLKSFM-CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 94 ~~~ik~~~-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
++||.+.. +.+ ..++.+.++++++.|. ++++.+|-.-
T Consensus 86 adG~VfG~L~~d-----g~iD~~~~~~Li~~a~--~~~~tFHRAf 123 (201)
T PF03932_consen 86 ADGFVFGALTED-----GEIDEEALEELIEAAG--GMPVTFHRAF 123 (201)
T ss_dssp -SEEEE--BETT-----SSB-HHHHHHHHHHHT--TSEEEE-GGG
T ss_pred CCeeEEEeECCC-----CCcCHHHHHHHHHhcC--CCeEEEeCcH
Confidence 99986643 222 2578899999999886 9999999543
No 251
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.71 E-value=1.8e+02 Score=25.08 Aligned_cols=96 Identities=25% Similarity=0.262 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEE
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 98 (411)
.++.....++.+.+|++.+- ..+++ | ...+.++...+.. . .+.++- + |-. ..++++..++.|+..+
T Consensus 15 ~~~a~~ia~al~~gGi~~iE-it~~t-p--~a~~~I~~l~~~~-~--~~~vGA--G-TVl---~~e~a~~ai~aGA~Fi- 80 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIE-ITLRT-P--AALDAIRAVAAEV-E--EAIVGA--G-TIL---NAKQFEDAAKAGSRFI- 80 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEE-EeCCC-c--cHHHHHHHHHHHC-C--CCEEee--E-eCc---CHHHHHHHHHcCCCEE-
Confidence 34555677888999999874 33232 2 2344555443322 1 222221 1 222 2346778888899876
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccc
Q 015182 99 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 141 (411)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 141 (411)
++| .+++ ++++.++++|+++.-=+-.+.++
T Consensus 81 --vSP-------~~~~----~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 81 --VSP-------GTTQ----ELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred --ECC-------CCCH----HHHHHHHHcCCCEeCCCCCHHHH
Confidence 332 2343 46677889999998877766543
No 252
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=32.66 E-value=3.7e+02 Score=24.54 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCC--------C----CHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHH
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPST--------I----STETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 86 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
...+.+....+.+.||+.|.-+. +..|.. . ..+.++...+.......+.++.+....+...+...++
T Consensus 84 ~~~l~~~L~~~~~~Gi~niL~l~-GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~ 162 (287)
T PF02219_consen 84 REALQSDLLGAHALGIRNILALT-GDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAEL 162 (287)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-S-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEec-CCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHH
Confidence 34555666778899999998653 211111 0 1222233222222212333444432222222212233
Q ss_pred HHH---HHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 87 EAL---LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 87 ~~~---~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
..+ .+.|+..+-.= +.++.+.+.+.++.+++.|+.+-+
T Consensus 163 ~~l~~Ki~aGA~f~iTQ---------~~fd~~~~~~~~~~~~~~g~~~pI 203 (287)
T PF02219_consen 163 KRLKKKIDAGADFIITQ---------PFFDAEAFERFLDRLREAGIDVPI 203 (287)
T ss_dssp HHHHHHHHTTESEEEEE---------E-SSHHHHHHHHHHHHHTTHTSEE
T ss_pred HHHHHHHHCCCCEEecc---------ccCCHHHHHHHHHHHHHcCCCCcE
Confidence 333 45798876442 256789999999999999873333
No 253
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=32.10 E-value=3.3e+02 Score=23.46 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=52.8
Q ss_pred HHHHHHHHCCceEEEE-eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccC
Q 015182 84 SALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLK 162 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (411)
++++++.+.|++.+=+ .|+..-.+.+ .+.++.++.+-+. ..+++.+|.--.. |..
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~-~~g~~~i~~i~~~---~~~~~DvHLMv~~--------------P~~------ 71 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNL-TFGPDIIKAIRKI---TDLPLDVHLMVEN--------------PER------ 71 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB--B-HHHHHHHHTT---SSSEEEEEEESSS--------------GGG------
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcc-cCCHHHHHHHhhc---CCCcEEEEeeecc--------------HHH------
Confidence 3556666678776533 2333222232 3567777776543 6789999964321 111
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc
Q 015182 163 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 227 (411)
Q Consensus 163 ~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~ 227 (411)
-++.+.+. |......|........+.++..|+.|+++....+|..
T Consensus 72 ---------~i~~~~~~-----------g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 72 ---------YIEEFAEA-----------GADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp ---------HHHHHHHH-----------T-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS
T ss_pred ---------HHHHHHhc-----------CCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC
Confidence 12222222 4334445655321456788888889988777777754
No 254
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.07 E-value=4.1e+02 Score=24.43 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=55.9
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCC--CCCCHH---HHHHHHHHHhcCCceEEEEEeeecC-CCccchHHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDP--STISTE---TLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLN 91 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (411)
+.+.+.+-.+..+..||..++-.+ .+.. ....-+ .++...+..++ ++.+.. +... ...+.+...+...+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~G-stGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~--gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGG-TSGEPGSLTLEERKQAIENAIDQIAG--RIPFAP--GTGALNHDETLELTKFAEE 93 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc-cCcccccCCHHHHHHHHHHHHHHhCC--CCcEEE--ECCcchHHHHHHHHHHHHH
Confidence 444556666778899999998776 2221 111111 22222222233 333322 2222 12233444455567
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhC-CCcEEEec
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVHA 135 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~-g~~v~~H~ 135 (411)
.|++++-+..-+ +...+++++.+-++. ++.. ++|+.+.-
T Consensus 94 ~Gad~v~v~pP~-----y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 94 AGADAAMVIVPY-----YNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred cCCCEEEEcCcc-----CCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 899998664321 123456666666655 4455 78988873
No 255
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=32.05 E-value=4.8e+02 Score=25.26 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEE---Eee-------ecCCCcc-chHHHHHHHHCCc
Q 015182 26 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF---WGG-------LVPENAY-NASALEALLNAGV 94 (411)
Q Consensus 26 ~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~-~~~~~~~~~~~g~ 94 (411)
.+.|+.+|--||.|+. +. .+...+++..- ..+.+-++. |.. +...+.+ .++.+.+..+.|+
T Consensus 83 ~~~A~~~GADtiMDLS--tG---gdl~~iR~~il---~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGV 154 (423)
T TIGR00190 83 ALIAIKYGADTVMDLS--TG---GDLDEIRKAIL---DAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGV 154 (423)
T ss_pred HHHHHHcCCCeEeecc--CC---CCHHHHHHHHH---HcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 5678899999999986 22 23444544331 112222211 110 0111111 2455566667788
Q ss_pred eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 95 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
+.+.+.. | ++ ++.++.+++.+...-+=..+.+....-... +-...|.+. .+.
T Consensus 155 DfmTiH~------G---i~----~~~~~~~~~~~R~~giVSRGGs~~~~WM~~------------~~~ENPlye---~fD 206 (423)
T TIGR00190 155 DFMTIHA------G---VL----LEYVERLKRSGRITGIVSRGGAILAAWMLH------------HHKENPLYK---NFD 206 (423)
T ss_pred CEEEEcc------c---hh----HHHHHHHHhCCCccCeecCcHHHHHHHHHH------------cCCcCchHH---HHH
Confidence 8877642 2 23 334444445444444433443322111110 012233333 267
Q ss_pred HHHHHHhhhccCC-CCCCceEEEEcCCChH-H------HHHHHHHHhHCCCCEEEEccccccccc
Q 015182 175 ELLTVAKDTRTDG-PAEGAHLHIVHLSDAS-S------SLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~~~~i~h~~~~~-~------~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
++++++++++.-- ...|.|--..|-++.. + --++.++++++|+.+..+ .|-|.-++
T Consensus 207 ~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVE-GPGHvPl~ 270 (423)
T TIGR00190 207 YILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVE-GPGHVPLD 270 (423)
T ss_pred HHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEE-CCCCCcHH
Confidence 7888888772200 0012222222222210 0 125788888999999886 56665443
No 256
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=31.68 E-value=1.5e+02 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC--CCcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY--KRPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~v~~H~~~~~ 139 (411)
++.+.+.|+..|.+ .+. .| ..++..+.++++..++. ++++.+|++++.
T Consensus 155 ~~~~~~~Ga~~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 155 AERLLDLGCDEISL-GDT---IG--VATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred HHHHHHcCCCEEEE-CCC---CC--ccCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 34455678887654 221 23 46788888888887764 489999999864
No 257
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.22 E-value=4e+02 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=32.7
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
+.+.+.|+..|.+ .+. .| ..+++++.++++..++ .++++.+|++++.
T Consensus 148 ~~~~~~g~~~i~l-~DT---~G--~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~ 195 (363)
T TIGR02090 148 KRAEEAGADRINI-ADT---VG--VLTPQKMEELIKKLKENVKLPISVHCHNDF 195 (363)
T ss_pred HHHHhCCCCEEEE-eCC---CC--ccCHHHHHHHHHHHhcccCceEEEEecCCC
Confidence 3445678887654 221 23 4678888888888764 4689999999874
No 258
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=31.04 E-value=1.4e+02 Score=28.15 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHCCceEEEEeccCCCCC------CCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 84 SALEALLNAGVLGLKSFMCPSGIN------DFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~------~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+....+.+.|++++|+.+.+++.+ |.+...-..+.++.+.+++++.+|..
T Consensus 162 e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa 217 (343)
T TIGR01305 162 EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS 217 (343)
T ss_pred HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE
Confidence 455667788999999998775432 22222335566677777777777665
No 259
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.67 E-value=2.4e+02 Score=24.39 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEE
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 98 (411)
.++.....++.+.+|++.+-- .+++ | ...+.++...+.. ..+.++- + |-. ..++++...+.|+..+
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEi-t~~t-~--~a~~~i~~l~~~~---~~~~vGA--G-TVl---~~~~a~~a~~aGA~Fi- 84 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEV-TLRT-P--VALDAIRLLRKEV---PDALIGA--G-TVL---NPEQLRQAVDAGAQFI- 84 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-eCCC-c--cHHHHHHHHHHHC---CCCEEEE--E-eCC---CHHHHHHHHHcCCCEE-
Confidence 445556678889999998743 3232 2 2344555544321 1222221 1 222 2346778888999887
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc
Q 015182 99 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 140 (411)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 140 (411)
++| .+++ ++++.++++|+++..=+..+.+
T Consensus 85 --vsP-------~~~~----~v~~~~~~~~i~~iPG~~TptE 113 (204)
T TIGR01182 85 --VSP-------GLTP----ELAKHAQDHGIPIIPGVATPSE 113 (204)
T ss_pred --ECC-------CCCH----HHHHHHHHcCCcEECCCCCHHH
Confidence 332 2333 5677788999999886666554
No 260
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=30.60 E-value=4.3e+02 Score=24.28 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=56.8
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceE--EEEEeeecCC---C---ccchHHHHHHHH-CCc
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVD--VGFWGGLVPE---N---AYNASALEALLN-AGV 94 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~---~---~~~~~~~~~~~~-~g~ 94 (411)
.++.++..|+|+|.--+ ...|-..+.+.-++..+.+.. ...+. ++..++.... . ....++..++.+ -|+
T Consensus 92 ~i~~ai~~GftSVM~Dg-S~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 92 KCKEAIDAGFTSVMIDA-SHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 46788999999996433 222322333344444444432 12221 2222221111 0 112345556654 588
Q ss_pred eEEEEeccCC--CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 95 LGLKSFMCPS--GINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 95 ~~ik~~~~~~--~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
+.+.+-++.. .+.+-+.++.+.|+++- ++.++|+..|-..
T Consensus 171 D~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iPLVLHGgS 212 (285)
T PRK07709 171 DCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVPLVLHGGT 212 (285)
T ss_pred CEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCCEEEeCCC
Confidence 8876654321 11223567777777764 3568999999654
No 261
>PRK07094 biotin synthase; Provisional
Probab=30.47 E-value=4.4e+02 Score=24.40 Aligned_cols=108 Identities=16% Similarity=0.052 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEE
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 98 (411)
.+.+....+.+.+.|++.+.-.+ +..+. ...+.+.+..+..+....+.+.+..+. . ..+.+..+.+.|+..+.
T Consensus 72 ~eei~~~~~~~~~~g~~~i~l~g-G~~~~-~~~~~l~~l~~~i~~~~~l~i~~~~g~--~---~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 72 PEEILECAKKAYELGYRTIVLQS-GEDPY-YTDEKIADIIKEIKKELDVAITLSLGE--R---SYEEYKAWKEAGADRYL 144 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec-CCCCC-CCHHHHHHHHHHHHccCCceEEEecCC--C---CHHHHHHHHHcCCCEEE
Confidence 34455666777789999987554 22222 234445554444333222333222211 1 12356777788988776
Q ss_pred EeccCCC------CCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 99 SFMCPSG------INDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 99 ~~~~~~~------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
+.+...+ .. +..+.+...+.++.+++.|+.+..+.
T Consensus 145 ~glEs~~~~~~~~i~--~~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 145 LRHETADKELYAKLH--PGMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred eccccCCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCeecceE
Confidence 5443211 11 13466788889999999999877664
No 262
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=29.88 E-value=45 Score=29.99 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCceeecccccCCCC--C----CccCChHHHHHHHHcCCceeEecCCCCCCCC
Q 015182 1 MPGLIDVHAHLDDPG--R----TEWEGFPSGTKAAAAGGITTLIDMPLNSDPS 47 (411)
Q Consensus 1 lPGlID~H~H~~~~~--~----~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~ 47 (411)
.|||||....-...- . +..|.+..-.|..++.|+|+.+-.. -+.|+
T Consensus 65 aPGfIDlQiNGGfGvDFS~dte~~~eGvAlVAr~ll~hGvtsf~Pt~-~tsp~ 116 (407)
T KOG3892|consen 65 APGFIDLQINGGFGVDFSQDTEDVGEGVALVARQLLSHGVTSFCPTL-VTSPP 116 (407)
T ss_pred cCceEEEEecCccccccccchhhhhhhHHHHHHHHHhcCCCcCCCcc-ccCCc
Confidence 399999987754321 1 1234444556778899999997544 34443
No 263
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=29.83 E-value=3.5e+02 Score=25.92 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCH-H---HHHHHHHHHh-cCCceEEEEEeeecCCCccchHHHHHHHHCC
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST-E---TLKLKVDAAE-KRIYVDVGFWGGLVPENAYNASALEALLNAG 93 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 93 (411)
.+.+.+.....+.+|+.-|.|.....++..... + ......+.++ +..... .+....+....+.++..+...+.|
T Consensus 145 ~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~-~y~~nit~~~~e~i~~a~~a~~~G 223 (367)
T cd08205 145 PEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKT-LYAPNITGDPDELRRRADRAVEAG 223 (367)
T ss_pred HHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcc-eEEEEcCCCHHHHHHHHHHHHHcC
Confidence 344566677788999999988762222211111 1 2222233333 111111 112223322222233344445689
Q ss_pred ceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 94 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 94 ~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
++++-+...+. + ....+.+ .+ ..+++++.|.....
T Consensus 224 ad~vmv~~~~~---g--~~~~~~l---~~---~~~lpi~~H~a~~g 258 (367)
T cd08205 224 ANALLINPNLV---G--LDALRAL---AE---DPDLPIMAHPAFAG 258 (367)
T ss_pred CCEEEEecccc---c--ccHHHHH---Hh---cCCCeEEEccCccc
Confidence 98865432211 1 1222333 22 34899999987644
No 264
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=29.73 E-value=2.3e+02 Score=25.91 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.++++++.--.-|.+-|+ .+.+.+.+..++++|.+++.+|.+=...
T Consensus 138 ~vR~~I~~A~kVIAIVMD-------~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 138 VVRRMIQQAQKVIAIVMD-------VFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred HHHHHHHHhcceeEEEee-------ccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 344555432233445553 2457899999999998999999885443
No 265
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.65 E-value=4.2e+02 Score=23.90 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHHcCCceeEecCCCCCCC------CCCCH-HHHH---HHHHHHhc-CCceEEEEEeeecCCCccchHHH-HHHHH
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDP------STIST-ETLK---LKVDAAEK-RIYVDVGFWGGLVPENAYNASAL-EALLN 91 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~------~~~~~-~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (411)
.....++..|+..++-.- ..++ ...+. +.++ ...+.++. ...+.+...... ..+.+.+.++ +.+.+
T Consensus 75 ~di~~a~~~g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~-r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 75 DDARIAVETGVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF-RSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC-CCCHHHHHHHHHHHHH
Confidence 356677888998776432 1110 00111 2222 22233322 234444443221 1122333333 34456
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcc
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 139 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 139 (411)
.|+..+.+ .+. .| ..+++.+..++...++ .++++.+|++++.
T Consensus 153 ~g~~~i~l-~Dt---~G--~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 153 LGVNRVGI-ADT---VG--IATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred cCCCEEEE-CCc---CC--CCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 78887644 221 23 5678888888887665 5789999999864
No 266
>PRK06852 aldolase; Validated
Probab=29.26 E-value=72 Score=29.55 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=31.8
Q ss_pred HHHHHHHHCC------ceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 84 SALEALLNAG------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 84 ~~~~~~~~~g------~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
..+.+.++.| ++++++.+...+... ...-+.+.++.+.|+++|+|+.+.+
T Consensus 119 ~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E--~~ml~~l~~v~~ea~~~GlPll~~~ 174 (304)
T PRK06852 119 LDVEQVVEFKENSGLNILGVGYTIYLGSEYE--SEMLSEAAQIIYEAHKHGLIAVLWI 174 (304)
T ss_pred ecHHHHHhcCCccCCCceEEEEEEecCCHHH--HHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3467777777 667766554332111 1123466788889999999999754
No 267
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=28.84 E-value=3.4e+02 Score=22.58 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=54.4
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC---CCccchHHHHHHHHCC
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP---ENAYNASALEALLNAG 93 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g 93 (411)
..+.+....+.++++|+..+.-.+ +.++...+...+ +..+-+.. +... ...+.+...+...+.|
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----------~~i~~~~~~~~~~~~~v~~~v--~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----------GYVRLAADALAGSDVPVIVVV--GFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----------HHHHHHHHHhCCCCCeEEEEe--cCCCCCCcHHHHHHHHHHHHHcC
Confidence 344566677888899998886433 345544444333 33222221 1111 0123345566677889
Q ss_pred ceEEEEeccCCCCCCCCCCC--HHHHHHHHHHHHh---CCCcEEEecC
Q 015182 94 VLGLKSFMCPSGINDFPMTN--ASHIKEGLSVLAR---YKRPLLVHAE 136 (411)
Q Consensus 94 ~~~ik~~~~~~~~~~~~~~~--~~~l~~~~~~a~~---~g~~v~~H~~ 136 (411)
++++.+...+. ...+ .+.+.+.++...+ .++++.+...
T Consensus 79 ad~i~v~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~ 121 (201)
T cd00945 79 ADEIDVVINIG-----SLKEGDWEEVLEEIAAVVEAADGGLPLKVILE 121 (201)
T ss_pred CCEEEEeccHH-----HHhCCCHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 99988743221 1112 3445554444433 4899988654
No 268
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.83 E-value=2e+02 Score=26.37 Aligned_cols=47 Identities=9% Similarity=-0.036 Sum_probs=31.9
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC--CCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY--KRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~--g~~v~~H~~~~~ 139 (411)
+.+.+.|+..|.+ .+. .| ..++.++.++++..++. ++++.+|++++.
T Consensus 154 ~~~~~~G~~~i~l-~DT---~G--~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~ 202 (280)
T cd07945 154 DFLSDLPIKRIML-PDT---LG--ILSPFETYTYISDMVKRYPNLHFDFHAHNDY 202 (280)
T ss_pred HHHHHcCCCEEEe-cCC---CC--CCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 3445678877654 221 23 46788888888887653 488999999864
No 269
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.59 E-value=1.8e+02 Score=23.14 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
+.+..+.|.++++.|++.|+.|.+...-
T Consensus 39 p~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 39 PGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 4456789999999999999999988654
No 270
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.56 E-value=4.5e+02 Score=24.14 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-Cce--EEEEEeeecCC---C---ccchHHHHHHHH-CCc
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYV--DVGFWGGLVPE---N---AYNASALEALLN-AGV 94 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~---~---~~~~~~~~~~~~-~g~ 94 (411)
..+.|++.|+|+|.--+ ...|...+.+.-++..+.+... ..+ .++...+.... + ....++..++.+ -|+
T Consensus 89 ~i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tgv 167 (283)
T PRK07998 89 DVKQAVRAGFTSVMIDG-AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGC 167 (283)
T ss_pred HHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCc
Confidence 46678899999996433 2222223344444454444322 222 22222221111 0 012345556554 688
Q ss_pred eEEEEeccCCCCCCC---CCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 95 LGLKSFMCPSGINDF---PMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 95 ~~ik~~~~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
+.+++-++. .+|. +.++.+.|+++.+ ..++|+.+|-..
T Consensus 168 D~LAvaiGt--~HG~Y~~p~l~~~~l~~I~~---~~~vPLVlHGgS 208 (283)
T PRK07998 168 DMLAVSIGN--VHGLEDIPRIDIPLLKRIAE---VSPVPLVIHGGS 208 (283)
T ss_pred Ceeehhccc--cccCCCCCCcCHHHHHHHHh---hCCCCEEEeCCC
Confidence 888765432 1222 4455666766644 469999999654
No 271
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=28.54 E-value=1.8e+02 Score=26.74 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=32.8
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CC-CcEEEecCCcc
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 139 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 139 (411)
.++++.+.|++.|.+ .+. .| ..++.++.++++..++ .+ +++.+|++++.
T Consensus 160 ~~~~~~~~G~d~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~ 210 (287)
T PRK05692 160 VAERLFALGCYEISL-GDT---IG--VGTPGQVRAVLEAVLAEFPAERLAGHFHDTY 210 (287)
T ss_pred HHHHHHHcCCcEEEe-ccc---cC--ccCHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 334455678887654 221 23 4678888888888764 34 78999999864
No 272
>PRK08123 histidinol-phosphatase; Reviewed
Probab=28.45 E-value=68 Score=29.10 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=25.7
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
++|.|+|.........+.+..-.+.|.+.|++.+.-
T Consensus 3 ~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~ 38 (270)
T PRK08123 3 KRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITF 38 (270)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence 479999975322222356677788999999999864
No 273
>PLN02389 biotin synthase
Probab=28.32 E-value=5.4e+02 Score=24.73 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHcCCceeEecCCC--CCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCce
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVL 95 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 95 (411)
..|.+....+.+...|++.++-... ........++.+.+..+..+. ..+.+....+. -..+.+.++++.|++
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~i~~s~G~-----l~~E~l~~LkeAGld 190 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGMEVCCTLGM-----LEKEQAAQLKEAGLT 190 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcEEEECCCC-----CCHHHHHHHHHcCCC
Confidence 4456666777778889999864210 011111123334444433332 22333221111 123567788888998
Q ss_pred EEEEeccCCC--CCCC-CCCCHHHHHHHHHHHHhCCCcEEEecC
Q 015182 96 GLKSFMCPSG--INDF-PMTNASHIKEGLSVLARYKRPLLVHAE 136 (411)
Q Consensus 96 ~ik~~~~~~~--~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~ 136 (411)
.+-.-+.... +... +..+.+...+.++.|++.|+.+..|..
T Consensus 191 ~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 191 AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEE
Confidence 8765554210 0110 123667778899999999999998853
No 274
>PLN02321 2-isopropylmalate synthase
Probab=28.17 E-value=3.6e+02 Score=27.97 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=31.9
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-----CCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-----g~~v~~H~~~~~ 139 (411)
+.+.+.|+..|.+ .+. .| ...++++.++++..++. +.++.+||+++.
T Consensus 247 ~~a~~aGa~~I~L-~DT---vG--~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~ 298 (632)
T PLN02321 247 GEVIKAGATTLNI-PDT---VG--YTLPSEFGQLIADIKANTPGIENVIISTHCQNDL 298 (632)
T ss_pred HHHHHcCCCEEEe-ccc---cc--CCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCC
Confidence 3445688887654 221 23 45788888888887654 466999999874
No 275
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.94 E-value=1.9e+02 Score=25.45 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=56.4
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeeecCCCccchHHHHHHHHCCceEE
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASALEALLNAGVLGL 97 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 97 (411)
.++.....++.+++|++.+- ..+++ | ...+.++.+.+....+ ..+.++- + |-. ..++++...+.|+..+
T Consensus 26 ~~~a~~~~~al~~gGi~~iE-iT~~t-p--~a~~~i~~l~~~~~~~~p~~~vGa--G-TVl---~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 26 VEVAKKVIKACYDGGARVFE-FTNRG-D--FAHEVFAELVKYAAKELPGMILGV--G-SIV---DAATAALYIQLGANFI 95 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEE-EeCCC-C--cHHHHHHHHHHHHHhhCCCeEEee--E-eCc---CHHHHHHHHHcCCCEE
Confidence 34455667788999999874 33233 2 2345555554332221 1222221 1 222 2345777788899876
Q ss_pred EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccc
Q 015182 98 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 141 (411)
Q Consensus 98 k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 141 (411)
++| .+++ ++++.++++|+++.-=+-.+.++
T Consensus 96 ---VsP-------~~~~----~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 96 ---VTP-------LFNP----DIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred ---ECC-------CCCH----HHHHHHHHcCCCEeCCCCCHHHH
Confidence 332 2343 46777889999998877666543
No 276
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=27.61 E-value=5.6e+02 Score=24.69 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
..+++++++.++.-.+......+|++...
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETST 144 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETST 144 (383)
T ss_pred CCCHHHHHHHHhcCCCccEEEEEeccCcc
Confidence 46788888888755566677778888754
No 277
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.26 E-value=6.3e+02 Score=25.14 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=63.8
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc----CCc-eEEEEEeeecCCCccchHHHHHHHHC
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK----RIY-VDVGFWGGLVPENAYNASALEALLNA 92 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
+.|.+....+.+.+.|++.+.-.. +..|.....+-+.+..+.... ... ..+..-.+ +. ..+++++|++.
T Consensus 116 s~EEI~~ea~~~~~~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig--~l---t~eey~~Lkea 189 (469)
T PRK09613 116 TQEEIREEVKALEDMGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIA--PT---TVENYKKLKEA 189 (469)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEee--cC---CHHHHHHHHHc
Confidence 345677778888899999998764 555444456655554443332 111 12222111 12 23568888899
Q ss_pred CceEEEEeccC-C-----CC--CCCCCCCHHHHHHHHHHHHhCCCc-EEE
Q 015182 93 GVLGLKSFMCP-S-----GI--NDFPMTNASHIKEGLSVLARYKRP-LLV 133 (411)
Q Consensus 93 g~~~ik~~~~~-~-----~~--~~~~~~~~~~l~~~~~~a~~~g~~-v~~ 133 (411)
|+..+-+|... . .. .+ +..+.+.=...++.|.+.|+. |.+
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g-~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSG-PKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCC-CCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 99988776532 1 00 12 234556666778889999987 544
No 278
>PTZ00413 lipoate synthase; Provisional
Probab=27.05 E-value=5.2e+02 Score=24.93 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=41.7
Q ss_pred eEEEEEeeecCCCccchHHHHHHHHCCceEEEE--eccCCCC--CCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 67 VDVGFWGGLVPENAYNASALEALLNAGVLGLKS--FMCPSGI--NDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~--~~~~~~~--~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+.-++..|+.....+.++-|..+.+.|++.+.+ |+.|+.. .=.-.+++++++..-+.|.+.|.....
T Consensus 297 tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 297 TKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred EeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEE
Confidence 333555554322223345566777889887655 6665421 111357899999999999999986543
No 279
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.73 E-value=4.7e+02 Score=23.52 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=25.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
++|.|+|.... .....++....+.|.+.|++++.-
T Consensus 3 ~~D~H~HT~~s-~~~~~~~ee~v~~A~~~Gl~~i~~ 37 (269)
T PRK07328 3 LVDYHMHTPLC-GHAVGTPEEYVQAARRAGLKEIGF 37 (269)
T ss_pred ceeeccCCCCC-CCCCCCHHHHHHHHHHCCCCEEEE
Confidence 47999997532 122345667788999999999864
No 280
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=26.59 E-value=5.1e+02 Score=23.82 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCcc-----------chHHHHHHHH
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY-----------NASALEALLN 91 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 91 (411)
....+.|+..|+|+|.--+ ..-|-..+++.-++..+.+......-=+-.+.+...+.+ ..++..++.+
T Consensus 87 ~e~i~~ai~~GFtSVM~Dg-S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~ 165 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDG-SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE 165 (286)
T ss_pred HHHHHHHHHcCCCeEeecC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH
Q ss_pred -CCceEEEEeccC--CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 92 -AGVLGLKSFMCP--SGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 92 -~g~~~ik~~~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
-|++.+.+-++. +.+.+-|.++-+.|+++-+.. ++|+..|
T Consensus 166 ~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~---~vPLVLH 208 (286)
T PRK12738 166 LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV---DVPLVLH 208 (286)
T ss_pred HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh---CCCEEEe
No 281
>PRK06256 biotin synthase; Validated
Probab=26.37 E-value=3.2e+02 Score=25.56 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEEE
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik 98 (411)
.+.+....+.+.+.|++.++-...+..|.....+.+.+..+..+....+.+....+. .+ .+.+..+.+.|+..+-
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~--l~---~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL--LT---EEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc--CC---HHHHHHHHHhCCCEEe
Confidence 355556667777788876653321222221112233333333332223333222222 11 2356677788888775
Q ss_pred EeccCC-----CCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 99 SFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 99 ~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
+.+..+ ... +..+.+...+.++.+++.|+.+.++.
T Consensus 168 ~~lEts~~~~~~i~--~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 168 HNLETSRSYFPNVV--TTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred cCCccCHHHHhhcC--CCCCHHHHHHHHHHHHHcCCeeccCe
Confidence 533321 011 12355777788999999999887663
No 282
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.34 E-value=2.2e+02 Score=27.20 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=33.1
Q ss_pred hHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 83 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 83 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
++++.+....+...+=+..+|....| ..++.++|..+.+.|.++|+.|..
T Consensus 147 ~~~LE~~~~~~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 147 FDALEKAFVDERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred HHHHHHHHhcCCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEe
Confidence 45555544444322223345544345 368999999999999999999984
No 283
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=26.18 E-value=5.3e+02 Score=23.94 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHhHHH
Q 015182 301 VLPVTWSYGRKYGVTLEQLASWWSERPAK 329 (411)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~al~~~T~n~A~ 329 (411)
.++.+...+.+.|+|-+++-+.+-.|.-|
T Consensus 280 ~~~~l~~~L~~rG~s~~~i~~i~g~N~lR 308 (309)
T cd01301 280 DLPNLTAELLERGYSEEEIEKIAGGNFLR 308 (309)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhchhc
Confidence 55666666778899999988887777543
No 284
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.09 E-value=5.3e+02 Score=23.82 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCccCChHHHHHHHHcCCceeEecCCCC-CCCCCCCHH----HHHHHHHHHhcCCceEEEEEeeecC-CCccchHHHHH
Q 015182 15 GRTEWEGFPSGTKAAAAGGITTLIDMPLN-SDPSTISTE----TLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEA 88 (411)
Q Consensus 15 ~~~~~~~~~~~~~~a~~~GvTtv~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 88 (411)
+.-+.+.+.+-.+..++.||-.+.-.+.. ..+.. +.+ .++...+..+++.. +.. +... .+.+.++..+.
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~L-s~eEr~~v~~~~v~~~~grvp--via--G~g~~~t~eai~lak~ 94 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTL-TLEERKEVLEAVVEAVGGRVP--VIA--GVGSNSTAEAIELAKH 94 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhc-CHHHHHHHHHHHHHHHCCCCc--EEE--ecCCCcHHHHHHHHHH
Confidence 33445556666777889999999877621 11221 222 22223333333322 222 2222 22233333444
Q ss_pred HHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHH-HHhCCCcEEEecC
Q 015182 89 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHAE 136 (411)
Q Consensus 89 ~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~~ 136 (411)
..+.|++++-+...| +...+.+.+.+-++. +...++|+.+--.
T Consensus 95 a~~~Gad~il~v~Py-----Y~k~~~~gl~~hf~~ia~a~~lPvilYN~ 138 (299)
T COG0329 95 AEKLGADGILVVPPY-----YNKPSQEGLYAHFKAIAEAVDLPVILYNI 138 (299)
T ss_pred HHhcCCCEEEEeCCC-----CcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 556899998664422 223344555444443 4556888877643
No 285
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.07 E-value=5.2e+02 Score=23.74 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-Cce--EEEEEeeecCC----C----ccchHHHHHHHH-
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYV--DVGFWGGLVPE----N----AYNASALEALLN- 91 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~----~----~~~~~~~~~~~~- 91 (411)
...+.|+..|+|+|.--+ ..-|-..+.+.-++..+.+... ..+ .++..++.... . ....++..++.+
T Consensus 88 e~i~~ai~~GftSVMiDg-S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~ 166 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDG-SHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVER 166 (284)
T ss_pred HHHHHHHHcCCCeEEecC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHH
Confidence 356788999999996433 2223223333334444444322 122 12222221111 0 012345555554
Q ss_pred CCceEEEEeccCC--CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 92 AGVLGLKSFMCPS--GINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 92 ~g~~~ik~~~~~~--~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
-|++.+.+-++.. .+.+-+.++.+.|+++-+ ..++|+..|-.+
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~iPLVlHGgS 211 (284)
T PRK12737 167 TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIRE---KVSIPLVLHGAS 211 (284)
T ss_pred hCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCCC
Confidence 6888776654321 112235667777777754 448999999544
No 286
>PRK08444 hypothetical protein; Provisional
Probab=25.83 E-value=5.1e+02 Score=24.60 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccc
Q 015182 84 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 141 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 141 (411)
+.+.+..+.|+.-+-+-.+ ..+..+.+.+.++++..++.--.+.+|+-....+
T Consensus 87 ~~a~~a~~~G~~ei~iv~G-----~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei 139 (353)
T PRK08444 87 EIVKNSVKRGIKEVHIVSA-----HNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEV 139 (353)
T ss_pred HHHHHHHHCCCCEEEEecc-----CCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHH
Confidence 4445555678887765321 1233466778888888886433588887555443
No 287
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.78 E-value=5.3e+02 Score=23.72 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=55.1
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceE--EEEEeeecCC---C---ccchHHHHHHHH-CCc
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVD--VGFWGGLVPE---N---AYNASALEALLN-AGV 94 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~---~---~~~~~~~~~~~~-~g~ 94 (411)
.++.|+..|+|+|.--+ ...|-..+.+.-++..+.+... ..+. ++..++.... + ....++..++.+ -|+
T Consensus 92 ~i~~ai~~GftSVM~Dg-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 92 KCKEAIDAGFTSVMIDA-SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred HHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC
Confidence 45778999999996433 2222222333333444444321 1221 2222211111 0 012345556654 588
Q ss_pred eEEEEeccCC--CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 95 LGLKSFMCPS--GINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 95 ~~ik~~~~~~--~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
+.+.+-+... .+.+-+.++.+.|+++.+ ..++|+..|-..
T Consensus 171 D~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~---~~~vPLVLHGgS 212 (286)
T PRK08610 171 DALAPALGSVHGPYKGEPKLGFKEMEEIGL---STGLPLVLHGGT 212 (286)
T ss_pred CEEEeeccccccccCCCCCCCHHHHHHHHH---HHCCCEEEeCCC
Confidence 8876654321 112234567777777654 458999999654
No 288
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=25.35 E-value=3.8e+02 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-----CCcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-----KRPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-----g~~v~~H~~~~~ 139 (411)
++.+.+.|+..|.+ .+. .| ..+++++.++++..++. ++++.+|++++.
T Consensus 245 ~~~a~~~Gad~I~l-~DT---vG--~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~ 297 (503)
T PLN03228 245 LGEAIKAGATSVGI-ADT---VG--INMPHEFGELVTYVKANTPGIDDIVFSVHCHNDL 297 (503)
T ss_pred HHHHHhcCCCEEEE-ecC---CC--CCCHHHHHHHHHHHHHHhccccCceeEecccCCc
Confidence 34455689887754 221 23 46788888888887653 488999999875
No 289
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.34 E-value=6e+02 Score=24.27 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
+.|+.++..+++.|++|.+-+.+..- . .+.+.+.+++++. |.++
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~np--------------~---------------~~a~~v~eia~e~-------Gl~l 101 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLNP--------------A---------------GCADIVREIAREL-------GLSL 101 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCH--------------H---------------HHHHHHHHHHHhc-------CCCe
Confidence 58899999999999999887654221 1 1344556677765 5555
Q ss_pred EEEcCCChHHHHHHHHHHhHCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGD 217 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~ 217 (411)
.+..+... ...+.++...+.|.
T Consensus 102 kvA~V~gD-d~~~~v~~~~~~g~ 123 (362)
T PF07287_consen 102 KVAVVYGD-DLKDEVKELLAEGE 123 (362)
T ss_pred eEEEEECc-cchHhHHHHHhCCC
Confidence 56555543 45566655544453
No 290
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=25.04 E-value=3e+02 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=25.9
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhC-C--CCCCccccc
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAG-Q--VSKGAIAIG 342 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg-~--~~~G~I~~G 342 (411)
..--|++..||-++++..|.++|. . ...|-|.+|
T Consensus 187 ~~~lG~e~~ea~~~~~~~p~~iL~~~~~~~~~~i~~g 223 (229)
T COG1603 187 AKVLGLEDDEAKKSLSEYPRLILRNRNRIRDGFIVPG 223 (229)
T ss_pred HHHhCCCHHHHHHHHHHhHHHHHHHhhhcCCceEEec
Confidence 345689999999999999999998 3 234555554
No 291
>PRK05926 hypothetical protein; Provisional
Probab=25.02 E-value=3.9e+02 Score=25.61 Aligned_cols=112 Identities=11% Similarity=-0.013 Sum_probs=59.3
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEeee-----cC-CCccchHHHHHHH
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGL-----VP-ENAYNASALEALL 90 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 90 (411)
..|.+....+.+ ..|+|.++-.. +..|. ...+.+.+..+..+.. ..+++....+. .. ......+.+.++.
T Consensus 100 s~eeI~~~a~~a-~~G~~ei~iv~-G~~p~-~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~Lk 176 (370)
T PRK05926 100 TPDQLVQSIKEN-PSPITETHIVA-GCFPS-CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLK 176 (370)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEEe-CcCCC-CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHH
Confidence 345566666666 68999998765 44443 3455555554444433 23444322111 00 0011123466777
Q ss_pred HCCceEEEEe-----cc--CCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 91 NAGVLGLKSF-----MC--PSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 91 ~~g~~~ik~~-----~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
+.|++.+-.. .. ..-... ...+.++..++++.|++.|+++..
T Consensus 177 eAGl~~~~g~GaEi~~e~~r~~~~p-~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 177 IAGLDSIPGGGAEILVDEIRETLAP-GRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred HcCcCccCCCCchhcCHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCcccC
Confidence 7787654311 00 000000 134567777899999999998875
No 292
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.66 E-value=5.5e+02 Score=23.52 Aligned_cols=108 Identities=17% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec---------CCCccchHHHHHHHHC-
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV---------PENAYNASALEALLNA- 92 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~- 92 (411)
....+.++.+|+|+|.--. ...+.....+.-++..+.+....-.-=.-.+.+. ..+-...++..++.+.
T Consensus 87 ~e~i~~Al~~G~tsVm~d~-s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDG-SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Q ss_pred CceEEEE--eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 93 GVLGLKS--FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 93 g~~~ik~--~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
|++.+.+ ........+.+.++.+.|+++.+.. ++|+..|
T Consensus 166 g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~---~iPlV~h 206 (281)
T PRK06806 166 DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV---HIPLVLH 206 (281)
T ss_pred CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc---CCCEEEE
No 293
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=24.53 E-value=4.7e+02 Score=24.40 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHCCceEEEEeccCCCCCCCCCCCHHH--------HHHHHHHHHhCCC-cEEEecCCcc
Q 015182 90 LNAGVLGLKSFMCPSGINDFPMTNASH--------IKEGLSVLARYKR-PLLVHAEMEK 139 (411)
Q Consensus 90 ~~~g~~~ik~~~~~~~~~~~~~~~~~~--------l~~~~~~a~~~g~-~v~~H~~~~~ 139 (411)
.+.|++++.++- . .+ ..++++. ++++++.+++.|. ++..|..+..
T Consensus 192 ~~~G~d~i~~~d--~--~~-~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~~ 245 (343)
T PF01208_consen 192 IEAGADGIFIFD--S--SG-SLISPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGNT 245 (343)
T ss_dssp HHTT-SEEEEEE--T--TG-GGS-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTHG
T ss_pred HHhCCCcccccc--c--cc-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCch
Confidence 468998876653 2 11 3556664 5788999999999 9999988853
No 294
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.23 E-value=1.1e+02 Score=20.72 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=21.7
Q ss_pred ecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 6 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 6 D~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
|.|+|...........+..-.+.+.+.|+..+.-
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~i 34 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAI 34 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEE
Confidence 6788875432222334556677888888888753
No 295
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.01 E-value=2.3e+02 Score=23.82 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=62.4
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCC--HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCC
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTN--ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR 164 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
+.+.+.|..++.+...... ... .+.++++.+.++++|+.+..+.......... . ......
T Consensus 2 ~~~~~~G~~~vE~~~~~~~-----~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~---------~----~~~~~~ 63 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQ-----PWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPD---------E----ENGSAN 63 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHS-----HHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTG---------T----TSTTSS
T ss_pred hHHHHcCCCEEEEecCCCc-----ccccchHHHHHHHHHHHHcCCeEEEEeccccccccc---------c----cccCcc
Confidence 3456789999988764321 111 3578899999999999977654322110000 0 000001
Q ss_pred CH-HHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC---C-----hHH-------H-HHHHHHHhHCCCCEEEEcccc
Q 015182 165 PP-SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---D-----ASS-------S-LDLLMEAKTNGDSITVETCPH 226 (411)
Q Consensus 165 p~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~---~-----~~~-------~-~~~i~~~~~~g~~i~~~~~p~ 226 (411)
++ ......+.+.+++++.. |.+....|.. . .+. . .++.+.+++.|+.+..+..+.
T Consensus 64 ~~r~~~~~~~~~~i~~a~~l-------g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 64 DEREEALEYLKKAIDLAKRL-------GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-------TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred hhhHHHHHHHHHHHHHHHHh-------CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 11 11123467788888877 7777777755 1 000 1 124445556788777776554
No 296
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=23.95 E-value=6.4e+02 Score=24.61 Aligned_cols=112 Identities=11% Similarity=-0.043 Sum_probs=54.9
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCC-CCHHHHH---HHHHHH-hcCC-ceEEEEEeeecCCCccchHHHHHHHHC
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPST-ISTETLK---LKVDAA-EKRI-YVDVGFWGGLVPENAYNASALEALLNA 92 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~-~~~~~~~---~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
.+.+.......+.+|+--|-|--.-.++.. .-.+.++ +..+++ ++.. ..-|. ..+|....+-.+..+.+.+.
T Consensus 159 p~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya--~NiT~~~~em~~ra~~~~~~ 236 (412)
T TIGR03326 159 TEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYL--ANITAPVREMERRAELVADL 236 (412)
T ss_pred hHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEE--EEecCCHHHHHHHHHHHHHh
Confidence 345566778889999999987531111111 1112222 222222 2222 12222 23343221222333344567
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 140 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 140 (411)
|+..+-+ ++. ...-.-++.+.+.+...+++++.|......
T Consensus 237 G~~~~mv--~~~------~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga 276 (412)
T TIGR03326 237 GGQYVMV--DVV------VCGWSALQYIRELTEDLGLAIHAHRAMHAA 276 (412)
T ss_pred CCCeEEE--Eee------ccchHHHHHHHHhhccCCeEEEEcCCcccc
Confidence 8776533 211 122344677766666779999999776543
No 297
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=23.47 E-value=6.1e+02 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
.++.+...+.+.|+|-+++-+.+-.|.-|.+.
T Consensus 288 ~~~~l~~~L~~rG~s~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 288 DLPNLTEELLKRGYSEEDIEKILGGNFLRVLR 319 (320)
T ss_dssp GHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHhHhHHHHhc
Confidence 45666666678899999999999888877763
No 298
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.45 E-value=2.7e+02 Score=23.92 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=54.4
Q ss_pred ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHHHHHCCceEE
Q 015182 18 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 97 (411)
Q Consensus 18 ~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 97 (411)
..++.....++.+.+|+..+- ..+++ | ...+.++...+.. .. +.++- + |-. ..++++...+.|+..+
T Consensus 18 ~~~~a~~~~~al~~gGi~~iE-iT~~t-~--~a~~~I~~l~~~~-p~--~~vGA--G-TV~---~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIE-ITLRT-P--NALEAIEALRKEF-PD--LLVGA--G-TVL---TAEQAEAAIAAGAQFI 84 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEE-EETTS-T--THHHHHHHHHHHH-TT--SEEEE--E-S-----SHHHHHHHHHHT-SEE
T ss_pred CHHHHHHHHHHHHHCCCCEEE-EecCC-c--cHHHHHHHHHHHC-CC--CeeEE--E-ecc---CHHHHHHHHHcCCCEE
Confidence 345667778889999999873 33233 2 3345565554432 22 22321 1 222 2346777788899876
Q ss_pred EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccc
Q 015182 98 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 141 (411)
Q Consensus 98 k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 141 (411)
- +| .++ .+++++++++|+++.-=+-.+.++
T Consensus 85 v---SP-------~~~----~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 85 V---SP-------GFD----PEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp E---ES-------S------HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred E---CC-------CCC----HHHHHHHHHcCCcccCCcCCHHHH
Confidence 3 22 234 456777889999999877776553
No 299
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.40 E-value=5.8e+02 Score=23.38 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh---CCCcEEEecC
Q 015182 88 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 136 (411)
Q Consensus 88 ~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 136 (411)
.+.+.|+.++-+ ..+ ...++.++.+|-+++++.+.+ -.++|.+|+.
T Consensus 34 ~l~~~Gv~gi~v--~Gs-tGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 34 WLLGYGLEALFA--AGG-TGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHhcCCCEEEE--CCC-CcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 344577777643 111 123456677777777765544 2467777765
No 300
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=23.32 E-value=7.5e+02 Score=24.63 Aligned_cols=113 Identities=11% Similarity=-0.036 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHcCCceeEecCCCCCCCCC-CCHHHHH---HHHHHH-hcCCceEEEEEeeecCCCccc-hHHHHHHHHC
Q 015182 19 WEGFPSGTKAAAAGGITTLIDMPLNSDPST-ISTETLK---LKVDAA-EKRIYVDVGFWGGLVPENAYN-ASALEALLNA 92 (411)
Q Consensus 19 ~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 92 (411)
.+.+.......+.+|+--|-|--.-.++.. .-.+.+. +..+++ +....-. .+...++..+.++ ++..+.+.+.
T Consensus 175 p~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k-~y~~NiT~~~~~em~~ra~~~~e~ 253 (468)
T PRK04208 175 AKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERK-GHYLNVTAPTMEEMYKRAEFAKEL 253 (468)
T ss_pred HHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcc-eEEEecCCCCHHHHHHHHHHHHHh
Confidence 344556678889999999987531111111 1112222 222222 2222111 1222344332222 3444445567
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 140 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 140 (411)
|+..+-+ ++. ...-..++.+.+.+...+++++.|......
T Consensus 254 G~~~~mv--~~~------~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga 293 (468)
T PRK04208 254 GSPIVMI--DVV------TAGWTALQSLREWCRDNGLALHAHRAMHAA 293 (468)
T ss_pred CCCEEEE--ecc------ccccHHHHHHHHhhhcCCcEEEecCCcccc
Confidence 8776543 211 112244777777777789999999776543
No 301
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=23.30 E-value=91 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.9
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
++|.|+|.. + .....+....+.|.+.|+..+.-
T Consensus 3 ~~DlHvHt~-~--d~~~~~~e~i~~A~~~Gl~~i~i 35 (237)
T PRK00912 3 FYDLNVHAV-P--DGYDTVLRLISEASHLGYSGIAL 35 (237)
T ss_pred ceEeccCCC-C--CCcchHHHHHHHHHHCCCCEEEE
Confidence 689999983 1 12445677788999999998874
No 302
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.09 E-value=4.6e+02 Score=23.41 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccch
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 142 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 142 (411)
.++.++..++++++++.|+....=+-+...++
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d 83 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVD 83 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHH
Confidence 46789999999999999999988777655433
No 303
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=22.54 E-value=6.2e+02 Score=23.40 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=26.4
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 41 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~ 41 (411)
|.++|+|+|+..+...... ..-...|...|+.-+..++
T Consensus 16 ~~~~~~~~~~~~~~~~~d~--s~v~~~a~~~~v~~~~v~g 53 (296)
T KOG3020|consen 16 PMLEDIYCHIQAHPSDSDA--SQVLERAVQAGVSKLIVTG 53 (296)
T ss_pred hhhchhhhccccCCCCccc--hHHHHHHHhccceEEEEeC
Confidence 5688999998765433322 1234568899999998876
No 304
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.51 E-value=5.5e+02 Score=22.75 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=35.1
Q ss_pred CccchHHH-HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CC-CcEEEecCCcc
Q 015182 79 NAYNASAL-EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 139 (411)
Q Consensus 79 ~~~~~~~~-~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 139 (411)
+.+.+.++ +.+.+.|+..+.+. +. .| ..+++.+.++++..++ .+ +++.+|++++.
T Consensus 144 ~~~~l~~~~~~~~~~g~~~i~l~-Dt---~G--~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 144 DPEYVLEVAKALEEAGADEISLK-DT---VG--LATPEEVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-hh---cC--CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 33444333 34456788877642 21 23 4678888888888665 34 89999999864
No 305
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=22.46 E-value=2.1e+02 Score=25.71 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 86 LEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 86 ~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
..++++ .|++.+|+- | -+++.+.++..-+.|+||+.|..=
T Consensus 99 A~r~~ke~gA~aVKlE-------G-----G~~~~~~i~~L~~~gIPV~gHiGL 139 (268)
T COG0413 99 AARLMKEAGADAVKLE-------G-----GEEMAETIKRLTERGIPVMGHIGL 139 (268)
T ss_pred HHHHHHHhCCCEEEEc-------C-----CHHHHHHHHHHHHcCCceEEEecC
Confidence 334444 799999972 1 156667777777899999999854
No 306
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=22.20 E-value=6.1e+02 Score=23.20 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=52.9
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC----------CccchHHHHHHHH-C
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----------NAYNASALEALLN-A 92 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~ 92 (411)
...+.++..|+|+|.--. ...+.....+.-++..+.+... .+.+..-.+.... .....++..++.+ .
T Consensus 88 e~i~~ai~~Gf~sVmid~-s~l~~~eni~~t~~v~~~a~~~-gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDG-SHLPFEENLALTKKVVEIAHAK-GVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred HHHHHHHHcCCCEEEECC-CCCCHHHHHHHHHHHHHHHHHc-CCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Confidence 456788999999996433 1111111222223333333321 1233221111100 0113445566664 6
Q ss_pred CceEEEEeccC--CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 93 GVLGLKSFMCP--SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 93 g~~~ik~~~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
|++.+.+-+++ +...+.+.++.+.|+++.+ ..++|+..|-.+
T Consensus 166 gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~---~~~iPlv~hGgS 209 (282)
T TIGR01859 166 GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKE---LTNIPLVLHGAS 209 (282)
T ss_pred CcCEEeeccCccccccCCCCccCHHHHHHHHH---HhCCCEEEECCC
Confidence 88877643222 1112224567777777654 457999999643
No 307
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.43 E-value=2.4e+02 Score=25.62 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 84 SALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 84 ~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
....++++ .|+.++|+ .+ .+++.+.++.+.+.|+||+.|..=
T Consensus 97 ~~a~r~~~~aGa~aVki-------Ed-----g~~~~~~I~al~~agIpV~gHiGL 139 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKL-------EG-----GEEVAETIKRLVERGIPVMGHLGL 139 (264)
T ss_pred HHHHHHHHHhCCeEEEE-------cC-----cHHHHHHHHHHHHCCCCEeeeecc
Confidence 33445555 89999997 12 245666677777899999999753
No 308
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.26 E-value=2.4e+02 Score=26.11 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEE-EecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++.+.|+++++..+.+++-+. .|..++.. +..-....|...+.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~----------------~~le~~~~p~l~~~------------------- 56 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQA----------------WRIESKKFPELAEK------------------- 56 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCC----------------ceEeeCccchhhhh-------------------
Q ss_pred CC----ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEc-ccccc
Q 015182 190 EG----AHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 228 (411)
Q Consensus 190 ~~----~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~-~p~~l 228 (411)
| ....-...|.. +-.++++.++++|+.|.+++ .|.|.
T Consensus 57 -g~~~~~~~~~~~yT~~-di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 57 -GGQINPRSPGGFYTYA-QLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred -cccccCCCCCCeECHH-HHHHHHHHHHHcCCEEEEeccchHHH
No 309
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=21.23 E-value=1e+02 Score=29.53 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEec-CCcccchhhh
Q 015182 113 NASHIKEGLSVLARYKRPLLVHA-EMEKGSERHV 145 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~ 145 (411)
+.+.++++++.|+++|+++..|+ +....+.+..
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~ 240 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEAH 240 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHH
Confidence 47999999999999999999999 4554444433
No 310
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=21.12 E-value=1e+02 Score=27.55 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=24.9
Q ss_pred eecccccCCCCCCccCChHHHHHHHHcCCceeEec
Q 015182 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39 (411)
Q Consensus 5 ID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d 39 (411)
+|.|+|.... ....+++..-.+.|.+.|++.+.-
T Consensus 1 ~D~H~Ht~~s-~d~~~~~ee~v~~A~~~Gl~~i~~ 34 (253)
T TIGR01856 1 RDGHSHSPFC-AHGTDTLEEVVQEAIQLGFEEICF 34 (253)
T ss_pred CCcccCcCCC-CCCCCCHHHHHHHHHHcCCCEEEe
Confidence 5899997432 223556777788999999999864
No 311
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.11 E-value=3.5e+02 Score=24.57 Aligned_cols=48 Identities=27% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CC-CcEEEecCCcc
Q 015182 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YK-RPLLVHAEMEK 139 (411)
Q Consensus 86 ~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g-~~v~~H~~~~~ 139 (411)
++++.+.|+..|.+ .+. .| ..+++.+..+++..++ .+ +++.+|++++.
T Consensus 157 ~~~~~~~g~~~i~l-~DT---~G--~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~ 206 (273)
T cd07941 157 LKAAAEAGADWLVL-CDT---NG--GTLPHEIAEIVKEVRERLPGVPLGIHAHNDS 206 (273)
T ss_pred HHHHHhCCCCEEEE-ecC---CC--CCCHHHHHHHHHHHHHhCCCCeeEEEecCCC
Confidence 34455678887653 221 23 5678888888888764 45 88999999864
No 312
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=20.93 E-value=6.5e+02 Score=23.06 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCcc-----------chHHHHHHHH
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY-----------NASALEALLN 91 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 91 (411)
...++.++..|+|+|.--+ ...|-..+.+.-++..+.+......-=+-.+.+...+.+ ..++..++.+
T Consensus 85 ~e~i~~ai~~GFtSVM~Dg-S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~ 163 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDG-SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE 163 (282)
T ss_pred HHHHHHHHHcCCCEEeecC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH
Q ss_pred -CCceEEEEeccC--CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 92 -AGVLGLKSFMCP--SGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 92 -~g~~~ik~~~~~--~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
-|++.+.+-++. +.+.+-+.++.+.|+++-+.. ++|+..|
T Consensus 164 ~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~---~iPLVlH 206 (282)
T TIGR01858 164 ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV---DVPLVLH 206 (282)
T ss_pred HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh---CCCeEEe
No 313
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.83 E-value=1.4e+02 Score=27.99 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEE-EecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++.+.|+++++..+.+++-+. .|..++.. +..-+...|...+..+.. .
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~----------------~rle~~~~P~lt~~ga~~--------~------ 63 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQG----------------WRIEIKSWPKLTEIGGST--------E------ 63 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCc----------------ceeeecCccccccccccc--------c------
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEc-ccccc
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET-CPHYL 228 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~-~p~~l 228 (411)
.....-.+.|.. +-.++++.++++|+.|++++ .|.|.
T Consensus 64 -~~~~~~~~YT~~-di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 64 -VGGGPGGYYTQE-DYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred -cCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEecCCcHHH
No 314
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.47 E-value=5e+02 Score=24.41 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccch
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 142 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 142 (411)
.++.+.++.+++++++.|+.+..=+-+...++
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd 103 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLESAD 103 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHH
Confidence 46789999999999999999998887765444
No 315
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.27 E-value=2.8e+02 Score=27.99 Aligned_cols=47 Identities=21% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEecCCcc
Q 015182 87 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK 139 (411)
Q Consensus 87 ~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~ 139 (411)
+.+.+.|+..+.+ .+. .| ...++++.++++..++. ++++.+||+++.
T Consensus 165 ~~~~~~Gad~i~l-~DT---vG--~~~P~~v~~li~~l~~~~~v~i~~H~HND~ 212 (524)
T PRK12344 165 KAAAEAGADWVVL-CDT---NG--GTLPHEVAEIVAEVRAAPGVPLGIHAHNDS 212 (524)
T ss_pred HHHHhCCCCeEEE-ccC---CC--CcCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4445678887653 221 23 46788888888876654 899999999875
No 316
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.20 E-value=7.5e+02 Score=23.45 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=44.7
Q ss_pred CceEEEEEeeecCCCccchHHHHHHHHCC-----ceEEEEeccCCCC----CCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 65 IYVDVGFWGGLVPENAYNASALEALLNAG-----VLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~ik~~~~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
..+++.+..++. ++.+++.++.++++.- ...+-+ +.|... .++...+.+.+.+..+..++.|+.+.+--
T Consensus 249 V~iry~LI~GvN-Ds~e~a~~L~~~lk~l~~~~~~~~VnL-IPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~ 326 (347)
T PRK14453 249 VYIAYIMLEGVN-DSKEHAEAVVGLLRNRGSWEHLYHVNL-IPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRT 326 (347)
T ss_pred EEEEEEeECCCC-CCHHHHHHHHHHHhhccccCCcceEEE-ecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 345555555544 3445566666666521 223332 223221 13456788999999999999999998876
Q ss_pred CCcccch
Q 015182 136 EMEKGSE 142 (411)
Q Consensus 136 ~~~~~~~ 142 (411)
.-...+.
T Consensus 327 ~~G~di~ 333 (347)
T PRK14453 327 QFGSDIS 333 (347)
T ss_pred CCCCchh
Confidence 5444433
No 317
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=20.09 E-value=6.5e+02 Score=22.68 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=25.6
Q ss_pred HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 91 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 91 ~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
+.|+..+-.= +.++.+.+.+.++.+++.|+.+=+++
T Consensus 158 ~aGA~f~iTQ---------~~fd~~~~~~~~~~~~~~gi~vPIi~ 193 (274)
T cd00537 158 DAGADFIITQ---------LFFDNDAFLRFVDRCRAAGITVPIIP 193 (274)
T ss_pred HCCCCEEeec---------ccccHHHHHHHHHHHHHcCCCCCEEe
Confidence 4688776432 35678899999999999986554544
No 318
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.04 E-value=3.6e+02 Score=25.74 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=37.2
Q ss_pred hHHHHHHHH-CCceE---EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 83 ASALEALLN-AGVLG---LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 83 ~~~~~~~~~-~g~~~---ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
++.+.++++ .|+.. |-+-+...+..|.| +|.+.++++.+.|+++++++.+-+.-
T Consensus 171 ~~kLe~lidevG~~nvp~I~~tiT~NsagGQp-VSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 171 LEKLERLIDEVGADNVPYIVLTITNNSAGGQP-VSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred HHHHHHHHHHhCcccCcEEEEEEeccccCCCc-chHHhHHHHHHHHHHcCCcEEeehhh
Confidence 566777664 35442 33333333445665 58899999999999999999987643
Done!