RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015182
(411 letters)
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 748 bits (1933), Expect = 0.0
Identities = 308/411 (74%), Positives = 351/411 (85%), Gaps = 3/411 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HL++PGRTEWEGFP+GTKAAAAGGITTL+DMPLNS PST S ETL+LK++A
Sbjct: 98 MPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ ++YVDVGFWGGLVPENA+NAS LE LL+AG LGLKSFMCPSGINDFPMT A+HIK
Sbjct: 158 AKGKLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAA 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L VLA+Y RPLLVHAE+ E +L+ D RSYSTYLK+RPPSWE+ AIR+LL VA
Sbjct: 218 LPVLAKYGRPLLVHAEVVSPVESDSRLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVA 274
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR G AEGAH+HIVHLSDA SSL+L+ EAK GDS+TVETCPHYLAFSAEEIPDGDT
Sbjct: 275 KDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDT 334
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
R+KCAPPIRDAAN+E LW+AL+DG IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQF
Sbjct: 335 RYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQF 394
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
VLP TW+ GR YG+TLEQLA WWSERPAKLAG SKGAIA G AD+VVW+PEAEF LD
Sbjct: 395 VLPATWTAGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDE 454
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
+P++ KH S+S YLG +LSGKV+AT RGNLV+ EG HA ACGSPILA
Sbjct: 455 SYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHAKQACGSPILAK 505
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 564 bits (1455), Expect = 0.0
Identities = 209/411 (50%), Positives = 268/411 (65%), Gaps = 16/411 (3%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLID H H+++PGRTEWEGF +GTKAAAAGGITT+IDMPLNS P T + E L+ K++A
Sbjct: 51 MPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEA 110
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ +++VDVGFWGGLVP N L L AGV+G K F+CPSG+++FP + ++E
Sbjct: 111 AQGKLHVDVGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEA 167
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ LA+ L VHAE + +E + R Y YL +RP E AI+ +L +A
Sbjct: 168 MKELAKTGSVLAVHAENPEITEALQEQAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLA 226
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K+T G LHIVHLS A + + L+ EA+ G +TVETCPHYL F+AE++PDG T
Sbjct: 227 KET-------GCRLHIVHLSSAEA-VPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGT 278
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKCAPPIRDAAN+E+LWEAL +G IDM+ SDHSP PELKLL +G+F KAWGGIS LQ
Sbjct: 279 EFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQL 338
Query: 301 VLPVTWSYGRKYGV-TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFEL 358
LPV + +LE +A E PAKL G KG IA+G AD VVW+PE EF +
Sbjct: 339 GLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTV 398
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D + + IS Y+GR L G+V ATI RG +VY++G G +L
Sbjct: 399 DAEDLYY--KNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 429 bits (1106), Expect = e-149
Identities = 188/410 (45%), Positives = 252/410 (61%), Gaps = 17/410 (4%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++D H H+++PGRTEWEGF +GT+AAAAGGITT IDMPLNS P+T + +L+ K +A
Sbjct: 50 FPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEA 109
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ ++ VDVGFWGGLVP YN L L AGV+G K+F+ PSG ++FP + + +G
Sbjct: 110 AKGKLAVDVGFWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKG 166
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ LAR + LLVHAE + + E YL +RP E AIR L +A
Sbjct: 167 MRELARLGQLLLVHAENPAITSA-LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALA 225
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K T G +H+VHLS ++ +++L+ EAK G +TVETCPHYL +AEE+PDG T
Sbjct: 226 KVT-------GCRVHVVHLS-SAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGT 277
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
KCAPPIRD AN+E LWEAL++G ID + SDHSP P+LK G+F KAWGGI+ LQ
Sbjct: 278 LAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQS 335
Query: 301 VLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
L V + +K G+ LE +A + PAK G KG IA G AD V +P+ + L
Sbjct: 336 TLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLT 395
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D + +H +S Y+GR + G+V AT RG +Y + A G +L
Sbjct: 396 PDDLYY-RHK-VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 346 bits (890), Expect = e-116
Identities = 160/400 (40%), Positives = 224/400 (56%), Gaps = 23/400 (5%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG+IDVH H ++PGRT WEGF +G+ A AAGG TT DMPLNS P T++ E L K + A
Sbjct: 54 PGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELA 113
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
++ VD WGGLVP N L L AGV+G K+FM SG ++F ++ + EG+
Sbjct: 114 RQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGM 170
Query: 122 SVLARYKRPLLVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
+A + L +HAE + + + + T D R YL++RP E A++ L
Sbjct: 171 KEIAALGKILALHAESDALTRHLTTQARQQGKT-DVRD---YLESRPVVAELEAVQRALL 226
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
A++T G LH VH+S ++ L+ EAK G ++VETCPHYL F+ E+
Sbjct: 227 YAQET-------GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERI 278
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
KCAPP+R + KE+LW L+ G IDM+SSDHSP PELK + +F WGGIS
Sbjct: 279 GAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELK--EGDDFFLVWGGISGG 336
Query: 299 QFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
Q L V + G + G+ LE +A + PAK G KG + +G AD V+ + + +
Sbjct: 337 QSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYT 396
Query: 358 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
L + + +H S Y GR G+V+AT RG VY++G
Sbjct: 397 LTKED-LFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQDG 434
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 322 bits (828), Expect = e-107
Identities = 144/398 (36%), Positives = 209/398 (52%), Gaps = 25/398 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D+H H +PG E F +G++AAAAGG+TT++DMP P + E L+ K++
Sbjct: 52 LPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPID-TAEALEDKLER 110
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ + VD F+GGL N LE G K FM S + ++E
Sbjct: 111 AKGKSVVDYAFYGGLTK---GNLGKLELTERGVEAGFKGFMDDST----GALDDDVLEEA 163
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L A +LVHAE + V E R+ L RPP E +AI L +A
Sbjct: 164 LEYAAELGALILVHAEDDDLIAEGVMNEG----LRAPELGLAGRPPIAEASAIARDLELA 219
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ T GA +HI H+S S ++L+ AK G +T E PH+L E+I D T
Sbjct: 220 RAT-------GARVHICHISTKES-VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGT 271
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+RD ++E LWEAL DG ID+++SDH+P E K L F +A GI L+
Sbjct: 272 LAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLP---FEEAPSGIPGLET 328
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LP+ + +K ++LE+L S PA++ G KGAI G ADLV+ +P+ E+ +
Sbjct: 329 ALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA 388
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
++ K + S + G L G+V+ATI RG +VY++G
Sbjct: 389 -EELYSKAKN-SPFEGFELKGRVVATILRGKVVYEDGE 424
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 294 bits (755), Expect = 4e-96
Identities = 147/403 (36%), Positives = 218/403 (54%), Gaps = 32/403 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DAA
Sbjct: 53 PGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAA 112
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHI 117
+ ++ +D GGLV YN L L GV+G K F+ G NDF N
Sbjct: 113 KGKLTIDAAQLGGLVS---YNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQF 169
Query: 118 KEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+G L +P+LVH E E G E K E + Y+ +RP E A
Sbjct: 170 YKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYVASRPVFTEVEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
IR +L +AK G LH+ H+S + ++ + A+ G +T E+CPHY
Sbjct: 224 IRRVLYLAKVA-------GCRLHVCHIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDT 275
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN ++AW
Sbjct: 276 DQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAW 332
Query: 293 GGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
GGI+ LQ + V + +K G++L + A + G KG IA G AD V +
Sbjct: 333 GGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQ 392
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P + + L N+ + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 393 PNSSYVLKNED-LEYRH-KVSPYVGRTIGARITKTILRGDVIY 433
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 225 bits (576), Expect = 2e-70
Identities = 117/390 (30%), Positives = 174/390 (44%), Gaps = 35/390 (8%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG+ID+H H +PG T E F SG++AAAAGG+TT++DMP N+ P T + E L K+ A
Sbjct: 6 PGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLA 64
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
+ VD G + G+ + L+ AG K FM S + +E L
Sbjct: 65 AAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDEETL 113
Query: 122 -SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ A + HAE E + K R A L +A
Sbjct: 114 ERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARALKLA 167
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ GA LHI H+S + L K +TVE PH+L E+ T
Sbjct: 168 RRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGT 216
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+R +++ L +AL DG ID+++SDH+P E K + A GI ++
Sbjct: 217 LGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPGVET 273
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LP+ + K ++L ++ S PA++ G +KG IA G ADL V + + E +
Sbjct: 274 ALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTI-R 332
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRG 390
H K + + G ++G + TI RG
Sbjct: 333 AEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 214 bits (548), Expect = 1e-66
Identities = 121/387 (31%), Positives = 189/387 (48%), Gaps = 54/387 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
+PG ID+H HL DPG T ++ F SG++AAAAGG+TT+IDMP N+ P I ++LK+
Sbjct: 4 LPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIK 62
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
AE+ YVD F G+ P + + L+ L +AG+ LK FM F + + + +
Sbjct: 63 LAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-LMR 119
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
+A P++VHAE +
Sbjct: 120 TFLEIASRGGPVMVHAER--------------------------------------AAQL 141
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A++ GA++HI H+S + L+L+ AK G +T E CPH+L +
Sbjct: 142 AEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNG 193
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
K PP+R ++E LWE + +G ID ++SDH+P E K + KA G L+
Sbjct: 194 AWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLE 252
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ + G K G++LE L SE PA++ G KG IA+G ADLV+ +P+ E+++
Sbjct: 253 TRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVT 312
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLAT 386
+ + + G ++GK ++T
Sbjct: 313 AEE--IESKADWTPFEGMEVTGKPVST 337
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 211 bits (538), Expect = 3e-64
Identities = 134/398 (33%), Positives = 194/398 (48%), Gaps = 28/398 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG ID+H HL DPG E SG+KAAA GG TT+ DMP N+ P + ETL+ K+
Sbjct: 39 PGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRL 97
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-NDFPMTNASHIK 118
+K VDV +GG V + EA L AG +G S + + M A
Sbjct: 98 KKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDILSMRRALEYA 156
Query: 119 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
V P+ +HAE V E + L RPP EE A+ LL
Sbjct: 157 AIAGV------PIALHAEDPDLIYGGVMHEG----PSAAQLGLPARPPEAEEVAVARLLE 206
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
+AK G +HI H+S S L+L+++AK+ G IT E PH+L S E++
Sbjct: 207 LAKHA-------GCPVHICHISTKES-LELIVKAKSQGIKITAEVTPHHLLLSEEDVARL 258
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
D K PP+R+ ++ L E L DG ID++++DH+P E K F A GI L
Sbjct: 259 DGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EFAAAPPGIPGL 315
Query: 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
+ LP+ K ++L+ L S PA++ G KG + GN AD+ V++ + E+ +
Sbjct: 316 ETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTI 375
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
+ + + K + + G L GK +ATI RG +VY++
Sbjct: 376 NAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 210 bits (537), Expect = 7e-64
Identities = 131/422 (31%), Positives = 206/422 (48%), Gaps = 78/422 (18%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PGL+D+H HL +PG+ + E +G++AAAAGG TT++ MP N+ P + E ++ +D A
Sbjct: 53 PGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRA 111
Query: 62 EKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMT 112
++ VDV G G + E AL AGV+ +D P+
Sbjct: 112 KEAGLVDVLPVGAITKGLAGEELTE-------FGALKEAGVVAFS--------DDGIPVQ 156
Query: 113 NASHIKEGLSVLARYKRPL-LVHAEMEKGSERHVKLEDDTLDTRSYSTY----------- 160
+A ++ L Y + L L+ A+ ED +L T
Sbjct: 157 DARLMRRAL----EYAKALDLLIAQHC---------EDPSL------TEGGVMNEGEVSA 197
Query: 161 ---LKTRPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 216
L P EE I R++L A+ T GA +HI H+S A S ++L+ AK G
Sbjct: 198 RLGLPGIPAVAEEVMIARDVLL-AEAT-------GARVHICHVSTAGS-VELIRWAKALG 248
Query: 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276
+T E PH+L + E++ D +K PP+R ++E L E L DG ID +++DH+P
Sbjct: 249 IKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPH 308
Query: 277 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVS 335
E K + F A GI+ L+ L + ++ K G+ LEQL + PA++ G +
Sbjct: 309 AREEKECE---FEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILG-LP 364
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKVLATISRGNLVY 394
G +A G ADLV+++PEAE+ +D + + ++G +L GKV+ TI G +VY
Sbjct: 365 AGPLAEGEPADLVIFDPEAEWTVDGE---DFASKGKNTPFIGMKLKGKVVYTIVDGKIVY 421
Query: 395 KE 396
++
Sbjct: 422 QD 423
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 207 bits (530), Expect = 2e-63
Identities = 129/388 (33%), Positives = 193/388 (49%), Gaps = 28/388 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PGL+D+H HL +PG E SG KAAAAGG TT++ MP N++P + ++L +
Sbjct: 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNR 71
Query: 61 AEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A+ V V G L + + LL AG +G + P+ +A ++
Sbjct: 72 AKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDDGKPIQDAELLRR 124
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
L A P++VH E + + + + +R L PP E + L +
Sbjct: 125 ALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPEAETIMVARDLEL 180
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A+ T GA +H HLS A S L+L+ +AK G +T E PH+L E + D
Sbjct: 181 AEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHHLLLDDEALESYD 232
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
T K PP+R ++E L EAL DG ID ++SDH+P E K L F +A GI L+
Sbjct: 233 TNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP---FAEAPPGIIGLE 289
Query: 300 FVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
LP+ W+ K G+ TL L S PAK+ G + G + +G ADLV+++P+AE+ +
Sbjct: 290 TALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPADLVLFDPDAEWIV 348
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLAT 386
D + K + + G++L G+VLAT
Sbjct: 349 DEET-FRSK-SKNTPFDGQKLKGRVLAT 374
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 207 bits (529), Expect = 2e-62
Identities = 122/408 (29%), Positives = 189/408 (46%), Gaps = 28/408 (6%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HL+ P G + F SGT+AAAAGG TT+ID + + ++ E ++
Sbjct: 50 LPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWR 108
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
A+ + +D GF + L L+ G+ K FM G+ M + +
Sbjct: 109 GKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKGLL---MVDDEELL 165
Query: 119 EGLSVLARYKRPLLVHAEMEKGS---ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175
+ L ++VHAE G E KL Y +RPP E A
Sbjct: 166 DVLKRAKELGALVMVHAE--NGDVIAELQKKLLAQGKTGPEYHAL--SRPPEVEAEATAR 221
Query: 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235
+ +A+ GA L+IVH+S + + D + A+ G + ETCP YL +
Sbjct: 222 AIRLAELA-------GAPLYIVHVS-SKEAADEIARARKKGLPVYGETCPQYLLLDDSDY 273
Query: 236 PDGDT---RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ C+PP+R ++E LW+ L G + + SDH P K + +F K
Sbjct: 274 WKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIP 333
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVW 350
G+ ++ +P+ WS G G +TLE+ S PAK+ G KG IA+G+ ADLV+W
Sbjct: 334 NGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIW 393
Query: 351 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+P AE + D H + + G ++ G + TISRG +V ++G
Sbjct: 394 DPNAEKTISADTH-HHN-VDYNIFEGMKVKGWPVVTISRGKVVVEDGE 439
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 183 bits (466), Expect = 4e-53
Identities = 119/428 (27%), Positives = 191/428 (44%), Gaps = 68/428 (15%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
MPG ID H H++ P G + F +GT+AAA GG TT+ID L ++L+ +
Sbjct: 48 MPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQP-----KGQSLREAL 102
Query: 59 DA----AEKRIYVDVGFWGGL--VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMT 112
+A A + +D GF + E + + L+ G+ K FM M
Sbjct: 103 EAWHGKAAGKAVIDYGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM---AYKGALML 157
Query: 113 NASHIKEGLSVLARYKRPLLVHAE------------MEKGSERHVKLEDDTLDTRSYSTY 160
+ + L A +VHAE + +G T
Sbjct: 158 DDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEG------------KTGPEYHA 205
Query: 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSIT 220
L +RPP E A + +A+ GA L+IVH+S +L+ + A+ G +
Sbjct: 206 L-SRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS-CKEALEAIRRARARGQRVF 256
Query: 221 VETCPHYLAFSAEEI--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP- 275
ETCP YL E PD ++ +PP+RD +++ LW L DG + ++++DH P
Sbjct: 257 GETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316
Query: 276 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-- 332
+ K L G+F K G ++ +P+ +S G G +TL + S PAK+ G
Sbjct: 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLY 376
Query: 333 -QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISR 389
+ KG IA+G AD+V+W+P A + H ++ + Y G ++G + T+SR
Sbjct: 377 PR--KGTIAVGADADIVIWDPNATKTISAS----TLHSNVDYNPYEGFEVTGWPVTTLSR 430
Query: 390 GNLVYKEG 397
G +V ++G
Sbjct: 431 GEVVVEDG 438
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 180 bits (459), Expect = 3e-52
Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 27/355 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG IDVH H +PG T E + +G+++AAAGG+TT++D P N+DP T+ E+ K +
Sbjct: 53 LPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAEL 111
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKE 119
A ++ VD G GG+ N LE+L GV L + FM S + + +E
Sbjct: 112 AARKSIVDFGINGGVTG----NWDPLESLWERGVFALGEIFMADS-TGGMGI-DEELFEE 165
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
L+ AR VHAE E + KL D ++S Y RP + E AA+ L V
Sbjct: 166 ALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAY---RPAAAEAAAVERALEV 222
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A +T GA +HI H+S +D IT E PH+L S +
Sbjct: 223 ASET-------GARIHIAHIS-TPEGVDAARREG-----ITCEVTPHHLFLSRRDWERLG 269
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
T K PP+R +E LWE L DG ID+++SDH+P E K D A G+ ++
Sbjct: 270 TFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVE 326
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354
+LP+ + RK + LE++ + PA++ G KG IA G ADLV+ +P+A
Sbjct: 327 TMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDA 381
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 179 bits (457), Expect = 6e-52
Identities = 126/429 (29%), Positives = 204/429 (47%), Gaps = 68/429 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG E +G++AA GG+T + +MP N++P T + E L K+
Sbjct: 55 LPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLAR 113
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASH 116
A R++ D F+ G +NA + LE L G G+K FM S + D
Sbjct: 114 ARHRMHCDFAFYVGGTRDNADELAELERL--PGCAGIKVFMGSSTGDLLVED-------- 163
Query: 117 IKEGL-SVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEA 171
EGL +L +R H+E E + +++E D S++ P W EEA
Sbjct: 164 -DEGLRRILRNGRRRAAFHSEDEYRLRERKGLRVEGD------PSSH-----PVWRDEEA 211
Query: 172 AI---RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 228
A+ R L+ +A++T G +H++H+S A +D L + K D TVE PH+L
Sbjct: 212 ALLATRRLVRLARET-------GRRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHL 260
Query: 229 AFSAEEIPDG-DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 287
+A E + T + PPIRDA +++ LW + G +D+L SDH+P E K
Sbjct: 261 TLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK------ 314
Query: 288 FLKAW----GGISSLQFVLPVTWSY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIA 340
K + G++ +Q ++P+ + GR ++LE+ S PA++ G KG IA
Sbjct: 315 -AKPYPASPSGMTGVQTLVPIMLDHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIA 370
Query: 341 IGNHADLVVWEPEAEFELDNDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNH 399
+G AD + + + + N+ + + Y G+ ++G + TI RG V +G
Sbjct: 371 VGYDADFTIVDLKRRETITNE---WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGEL 427
Query: 400 APAACGSPI 408
G P+
Sbjct: 428 VGPPTGEPV 436
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 176 bits (447), Expect = 1e-50
Identities = 117/412 (28%), Positives = 191/412 (46%), Gaps = 34/412 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDPSTISTETLKL 56
+PG IDVH HL+ P G + F +GTKAAAAGG TT+ID P + T + ET
Sbjct: 50 LPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHE 109
Query: 57 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 116
K AE + +D GF + N + + G+ SF + M +
Sbjct: 110 K---AEGKSVIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAYKNLLMVDDEE 164
Query: 117 IKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+ E L L VHAE + + R + + + S RPP E A
Sbjct: 165 LFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS-----RPPESEAEA 219
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
+ + +A D P L++VH+S A + +D + EA+ G + ETCP YL
Sbjct: 220 VARAIALAA--LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGETCPQYLVLDD 271
Query: 233 E--EIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNF 288
+ P + ++ C+PP+R+ +++ LW AL G + + SDH P + K + + +F
Sbjct: 272 TAYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDF 331
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
K G ++ + + + G G +TLE+ S PAK+ KG IA+G+ AD
Sbjct: 332 TKIPNGGPGVEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDAD 391
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+V+W+P + + H + + + G ++ G V++ +SRG +V ++G
Sbjct: 392 IVIWDPNRTTVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQ 441
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 158 bits (403), Expect = 3e-44
Identities = 115/431 (26%), Positives = 177/431 (41%), Gaps = 66/431 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG T S ++AA AGGIT+ ++MP N++P T + E L+ K
Sbjct: 53 LPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQI 111
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN---DFPMTNASHI 117
A +R + F+ G + N ++ L V G+K FM S N D P
Sbjct: 112 AAQRSLANYSFYFG-ATND--NLDEIKRLDPKRVCGVKVFMGASTGNMLVDNP------- 161
Query: 118 KEGLSVLARYKR----PLLVHAEME----KGSERHVKLEDDTLDT------RSYSTYLKT 163
L R R + H E ++ + D + RS
Sbjct: 162 ----ETLERIFRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRS------- 210
Query: 164 RPPSWEEAAIR------ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 217
EA + L AK G LH++H+S A L L
Sbjct: 211 -----AEACYKSSSLAVSL---AKKH-------GTRLHVLHISTAKE-LSLFENGPLAEK 254
Query: 218 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 277
IT E C H+L F + KC P I+ A+++E L +AL D ID++++DH+P
Sbjct: 255 RITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHT 314
Query: 278 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 337
E K +G + +A G+ +Q LP + ++LE++ S PA L +G
Sbjct: 315 WEEK---QGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERG 371
Query: 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
I G ADLV+ + + + + + + K S + GR +V T G LVY G
Sbjct: 372 FIREGYWADLVLVDLNSPWTVTKE-NILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNG 429
Query: 398 NHAPAACGSPI 408
+ G +
Sbjct: 430 QLVESCRGQRL 440
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 157 bits (399), Expect = 9e-44
Identities = 116/423 (27%), Positives = 183/423 (43%), Gaps = 58/423 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG E + ++A A GG+T+ ++MP N+ P T + L K+
Sbjct: 55 LPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLAR 113
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH--- 116
A ++ V+ GF+ G P+N L LL A G+K FM +SH
Sbjct: 114 AAEKCVVNYGFFIGATPDN------LPELLTANPTCGIKIFM-----------GSSHGPL 156
Query: 117 --IKEGL--SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+E + A R + VHAE + D +S EEAA
Sbjct: 157 LVDEEAALERIFAEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQD------EEAA 210
Query: 173 I---RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 229
+ R L ++K + LHI+HLS A +LL + K + +T E P +L
Sbjct: 211 LLATRLALKLSKKYQR-------RLHILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLL 260
Query: 230 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
+ + T + PP+R + E LW+AL DG ID +++DH+P E K +
Sbjct: 261 LNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQP---YP 317
Query: 290 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 349
+ G+ ++ LP+ + + T+ Q+ W S A+ G +KG IA G ADLV+
Sbjct: 318 NSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL 377
Query: 350 WEPEAEFELDNDHPVH----MKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACG 405
+L+ PV + S + G L+G + TI G +V+ G G
Sbjct: 378 ------VDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRG 431
Query: 406 SPI 408
+
Sbjct: 432 QAL 434
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 153 bits (388), Expect = 9e-42
Identities = 124/441 (28%), Positives = 196/441 (44%), Gaps = 57/441 (12%)
Query: 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 57
+PG +D H H+D P G + F +GT +AA GG TT+I ++ E ++
Sbjct: 53 LPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLR-EAVEDY 111
Query: 58 VDAAEKRIYVDVGFWGGLV---PENAYNASALEALLNAGVLGLKSFMCPSG--INDFPMT 112
A + +D F L+ P L AL+ G K FM ++D +
Sbjct: 112 HRRAAGKAVIDYAF--HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDDLKLDDRQIL 169
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST---YLKTRPPSWE 169
+ L+V R+ ++VHAE + + L + + +RP E
Sbjct: 170 ------DVLAVARRHGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKYHAISRPMLAE 219
Query: 170 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 229
A + +A+ D P + IVH+S + + + A+ G I ETCP YL
Sbjct: 220 REATHRAIALAE--LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKIFAETCPQYLF 271
Query: 230 FSAEEIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP---TVPELKL 282
+AE++ D ++ C+PP RD AN+E +W L DG ++ SSDH+P + KL
Sbjct: 272 LTAEDL-DRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKL 330
Query: 283 L--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGA 338
+F GI ++ LP+ +S G G ++L + + S PAKL G KGA
Sbjct: 331 AAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGA 390
Query: 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKE 396
IAIG AD+ +W+P+ E + N H + + Y G R++G + +SRG +V ++
Sbjct: 391 IAIGADADIAIWDPDREVTITNA----DLHHAADYTPYEGMRVTGWPVTVLSRGRVVVED 446
Query: 397 GN-HAPA------ACGSPILA 410
G A A P A
Sbjct: 447 GELVAERGSGQFLARSLPDRA 467
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 141 bits (357), Expect = 5e-38
Identities = 110/397 (27%), Positives = 174/397 (43%), Gaps = 55/397 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGLIDVH HL D + E SGTKAA GGIT + DMP N+ P + +T + ++
Sbjct: 46 LPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRI 104
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AEK+ Y D L+ N A ++A K FM S T +
Sbjct: 105 AEKKSYADY-ALNFLIAGNCEKAEEIKADFY------KIFMGAS-------TGGIFSENF 150
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
A + VHAE D + + RPP E AI L
Sbjct: 151 EVDYACAPGIVSVHAE----------------DPELIREFPE-RPPEAEVVAIERALEAG 193
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K + LHI H+S L L++++ N ++ E PH+L + ++
Sbjct: 194 KKLKKP-------LHICHISTK-DGLKLILKS--NLPWVSFEVTPHHLFLTRKDYERNP- 242
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+R +++ LWE I +++SDH+P E K + G GI L+
Sbjct: 243 LLKVYPPLRSEEDRKALWENF--SKIPIIASDHAPHTLEDK--EAGA-----AGIPGLET 293
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
+P+ K ++L + + PA++ G + G I GN+A+ V++ + E+ +
Sbjct: 294 EVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKA 352
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ ++ K + Y G +L GKV+ TI RG +V ++
Sbjct: 353 EE-LYTK-AGWTPYEGFKLKGKVIMTILRGEVVMEDD 387
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 131 bits (331), Expect = 3e-34
Identities = 98/370 (26%), Positives = 160/370 (43%), Gaps = 49/370 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+P D+H H PG TE E F +GT +A GG T ++DMP N++ K+
Sbjct: 45 LPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGR 103
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ YVD + NA +L+ +GLK +M + TN + I+ G
Sbjct: 104 VAPKAYVDFSLYSMETGNNA-------LILDERSIGLKVYMGGT-----TNTNGTDIEGG 151
Query: 121 -LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
+ + P+ HAE+ + +H ++++ + RP E A++ + +
Sbjct: 152 EIKKINEANIPVFFHAELSECLRKH------QFESKNLRDHDLARPIECEIKAVKYVKNL 205
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
T+ I H+S L E PH+L +++P G
Sbjct: 206 DLKTK----------IIAHVSSIDVIGRFLREVT-----------PHHL-LLNDDMPLG- 242
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
+ K PP+RD +E+L E + G D+LSSDH+P E D+ F A GI ++
Sbjct: 243 SYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEE----DKQEFEYAKSGIIGVE 298
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
+P+ + +K + L+ L ERPA L G + KG I G AD + ++ ++
Sbjct: 299 TRVPLFLALVKKKILPLDVLYKTAIERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI- 356
Query: 360 NDHPVHMKHP 369
ND +H K P
Sbjct: 357 NDKRLHSKCP 366
>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 118 bits (298), Expect = 7e-30
Identities = 103/406 (25%), Positives = 164/406 (40%), Gaps = 77/406 (18%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG ID+H HL + E SGT AA GG+T + DMP N+ P + E + K+
Sbjct: 46 LPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAE 104
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
E VD + G V ++ E + + G K F P + +E
Sbjct: 105 LEYYSRVDYFVYSG-VTKD------PEKVDKLPIAGYKIF--PEDLER---------EET 146
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
VL + ++ ++H E+ + L+ + K R W E A +
Sbjct: 147 FRVLLKSRKLKILHPEV------PLALKSNR----------KLRRNCWYEIAALYYVK-- 188
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ ++HI H S+ + + AK G TV+ PH+L + E D
Sbjct: 189 ---------DYQNVHITHASNPRT----VRLAKELG--FTVDITPHHLLVNGE----KDC 229
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PPIRD + L +AL + +D ++SDH+P KL + GI++L F
Sbjct: 230 LTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSF 284
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAE 355
P ++ K +++++ S PA++ G + G I G A+ V W +
Sbjct: 285 TPPFIYTLVSKGILSIDRAVELISTNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTK 343
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401
+ + P+ G L V ATI +G L Y EG P
Sbjct: 344 YSKVIETPL----------DGFELKASVYATIVQGKLAYLEGEVFP 379
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 105 bits (265), Expect = 4e-25
Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 55/409 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI-----DMPLNSDPSTISTETLK 55
PGL+D+ A L +PG S AA AGG+T+L+ D L+ +P + E LK
Sbjct: 54 CPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLD-EPGLV--EMLK 110
Query: 56 LKVDAAEK-RIY----VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 110
+ + +Y + VG G ++ E L AG +G + P
Sbjct: 111 FRARNLNQAHVYPLGALTVGLKGEVLTEMV-------ELTEAGCVGFSQ-------ANVP 156
Query: 111 MTNASHIKEGLSVLARYK-----RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRP 165
+ + + L + + RPL + +G + +R L P
Sbjct: 157 VVDTQVLLRALQYASTFGFTVWLRPLDAF--LGRGGVAA----SGAVASR---LGLSGVP 207
Query: 166 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 225
+ E A+ + + + T GA +H+ LS A+ + L+ AK G +T +
Sbjct: 208 VAAETIALHTIFELMRVT-------GARVHLARLSSAAG-VALVRAAKAEGLPVTCDVGV 259
Query: 226 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 285
+++ +I D++F+ PP+R ++E + AL DG ID + SDH+P + KLL
Sbjct: 260 NHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLLP- 318
Query: 286 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA 345
F +A G + L+ +LP+T + + V L + + + PA++ G + G +A G A
Sbjct: 319 --FAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLG-LPAGRLAEGAPA 375
Query: 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
DL V++P+A + ++ + +LG L G+V AT+ G + +
Sbjct: 376 DLCVFDPDAHWRVEPRALKSQGKN--TPFLGYELPGRVRATLVAGQVAF 422
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 105 bits (263), Expect = 1e-24
Identities = 108/411 (26%), Positives = 176/411 (42%), Gaps = 36/411 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLK 57
MPG ID H HL P G + F SG AA AGG T ID + + + ++ E + K
Sbjct: 56 MPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK 115
Query: 58 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH 116
AEK +D GF + + + +E L+ G+ K FM G M
Sbjct: 116 ---AEKSC-MDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGS---LMVTDEL 168
Query: 117 IKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+ EG +VHAE + +G +R ++L + + S RPP E A
Sbjct: 169 LLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS-----RPPLLEGEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
+ +AK T L++VH+ + +++ + A+ +G + E L
Sbjct: 224 TARAIRLAKFVNTP-------LYVVHVM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDD 275
Query: 233 EEIPDGDTRFKC----APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
++ D D +PPIR A + + L AL G + ++ +DH P K + +F
Sbjct: 276 SKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDF 335
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
K G++ ++ + + W + G ++ S AK+ KGAI G+ AD
Sbjct: 336 RKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDAD 395
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+++ P + F + H + Y GRR GKV TIS+G +V++ G
Sbjct: 396 IIILNPNSTFTISAK--THHSRIDTNVYEGRRGKGKVEVTISQGRVVWENG 444
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 102 bits (255), Expect = 6e-24
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 264
SL+LL + K+ G+ + E H+L + +T K PP+R ++ L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267
Query: 265 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 321
ID L+S HS K L DE F GI S+ + ++Y K G +T +L+
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322
Query: 322 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 381
+ S PA+ G + G I +G ADLV+++P +D+ + S Y G L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372
Query: 382 KVLATISRGNLVYK 395
K+ A I +G L +
Sbjct: 373 KIEAVIIKGKLYLE 386
>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 97.0 bits (242), Expect = 5e-22
Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 31/388 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PGL+D+++H +PG E E S AAAAGG T + +P ++ P + TL A
Sbjct: 57 PGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQA 115
Query: 62 EKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
++ V + FWG L + L L AGV+G + P+ N + ++
Sbjct: 116 QQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFT--------DGQPLENLALLRRL 167
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L L +P+ + + V E + L P S E A+ LL +
Sbjct: 168 LEYLKPLGKPVALWPCDRSLAGNGVMREGLL----ALRLGLPGDPASAETTALAALLELV 223
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
T +H++ +S A S ++L+ +AK G IT T +L E + D
Sbjct: 224 AAIGTP-------VHLMRISTARS-VELIAQAKARGLPITASTTWMHLLLDTEALASYDP 275
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
+ PP+ + ++++ L E + G ID ++ DH+P E K + F +A G L+
Sbjct: 276 NLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLEL 332
Query: 301 VLPVTW-SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ W + ++ QL S PA+ GQ ++A G A+L++++P+ + +
Sbjct: 333 ALPLLWQNLVETGELSALQLWQALSTNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVS 391
Query: 360 NDHPVHMKHPSI-SAYLGRRLSGKVLAT 386
+ S + +LG+ L G+VL T
Sbjct: 392 AQ---TLHSLSRNTPWLGQTLKGRVLQT 416
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 94.8 bits (236), Expect = 1e-21
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 64/281 (22%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGLIDVH HL +PG T E F SGTKAA AGG T + MP N++PS + +LKL
Sbjct: 5 LPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSL 63
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ + D F G NA L + +GLK ++ N+ T ++ I +
Sbjct: 64 AQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLILDK 111
Query: 121 LSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
++ A + +P++ HA+ S L AA+
Sbjct: 112 ITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AAV- 140
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
LL + R +HI H+S ++L+ AK G +T E PH+L S ++
Sbjct: 141 -LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQDD 190
Query: 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 275
+P G +++ P + ++E LWE L +ID ++DH+P
Sbjct: 191 LPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 70.1 bits (172), Expect = 4e-13
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)
Query: 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 250
H +S A S + L AK G +T ++L+ + +I + T FK +PP+R
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289
Query: 251 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 310
++ + EA+ G ID++ S H P + K L F +A G L+ +L
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346
Query: 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 370
V L +L S RPA++ G + G + G AD++V + + + +D P +K S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402
Query: 371 I-SAYLGRRLSGKVLATISRGNLVYK 395
+ + R G+V+ TI G VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428
Score = 51.2 bits (123), Expect = 4e-07
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 46
PGL+D + +PG E S ++AAAAGG+T++I MP ++DP
Sbjct: 59 APGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 58.1 bits (140), Expect = 2e-09
Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)
Query: 4 LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 45
ID H HLD +A AGG+TT++DM ++
Sbjct: 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59
Query: 46 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 97
P T + ++ +AA + V G+ A L L G +GL
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 98 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157
K + + ++ L + P+++HA
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154
Query: 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 216
A+ +L+ G + I H+S L+LL EA
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196
Query: 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276
+++E CP RD E L L G L +D P
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238
Query: 277 VPELKLLDE 285
LL
Sbjct: 239 PLGTDLLAL 247
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 57.7 bits (139), Expect = 2e-09
Identities = 69/360 (19%), Positives = 112/360 (31%), Gaps = 64/360 (17%)
Query: 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 57
+PGLID H HL+ P G +E +G KA G TT++D P +++ S + +
Sbjct: 3 LPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIMEG 62
Query: 58 VDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMT 112
+ AA K + + G A E L +
Sbjct: 63 LAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTAKA 118
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
L LA + P + H ++ E + ++ S E A
Sbjct: 119 IDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEVNA 172
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
I + + H +HL D + L++ +G + S
Sbjct: 173 ILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------LSN 208
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
E I RF + I L S + +L D+G +
Sbjct: 209 ESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVGLG 251
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWE 351
+ L Y G++ + + PAK G G+I +G ADLVV +
Sbjct: 252 TDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 37
+PGLID+H HL E +G AA AGG+TT+
Sbjct: 32 LPGLIDMHVHLG--EEPGRETLETGAAAALAGGVTTV 66
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 47.5 bits (112), Expect = 6e-06
Identities = 66/356 (18%), Positives = 101/356 (28%), Gaps = 67/356 (18%)
Query: 1 MPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 55
+PGL+D+H H ++E +G A A G+T+ +
Sbjct: 8 LPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELLT------ 61
Query: 56 LKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
R+ V V G + N AL+ L+ + S ++
Sbjct: 62 --------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG------ 107
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
GL L R H + L E A
Sbjct: 108 ----PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDL 158
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
L P G LH++ + L+ + L +
Sbjct: 159 HLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVPLELLLRD 205
Query: 235 IPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 293
FK PP+R ++E L E L G L SDH+P P
Sbjct: 206 AAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP--------------- 250
Query: 294 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLV 348
+ +L G+T E+ + PA+L G G + +G ADLV
Sbjct: 251 --AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 44.7 bits (106), Expect = 6e-05
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVD 59
PG IDVH H D + A A GITT++ L S +
Sbjct: 133 PGAIDVHVHFDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQ 183
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98
AAE V+ GF G N+ +AL + AG GLK
Sbjct: 184 AAEA-WPVNFGFLG---RGNSSKPAALIEQVEAGACGLK 218
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 44.2 bits (105), Expect = 8e-05
Identities = 84/410 (20%), Positives = 132/410 (32%), Gaps = 144/410 (35%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM-------PLNSD-----PSTI 49
PG IDVH H D G+ W+ + ++ G+TT++ P N D +
Sbjct: 53 PGFIDVHTHYD--GQVFWD---PDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLM 107
Query: 50 STETLKLK------------VDAAEKRIY-VDVGFWGGLVPENAYNASAL---------- 86
+ +DA E R V+V LV A + +
Sbjct: 108 EGLVALGEGLPWGWATFAEYLDALEARPPAVNVAA---LVGHAALRRAVMGLDAREATEE 164
Query: 87 ----------EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL----SVLARYKRPLL 132
EAL AG LG+ L V ARY
Sbjct: 165 ELAKMRELLREAL-EAGALGI-------STGLAYAPRLYAGTAELVALARVAARYGGVYQ 216
Query: 133 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 192
H V+ E D++ A+ ELL + ++T G
Sbjct: 217 TH----------VRYEGDSILE-----------------ALDELLRLGRET-------GR 242
Query: 193 HLHIVHLSDASS--------SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 244
+HI HL A + L L+ A+ G +T + P Y A S ++
Sbjct: 243 PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYP-YGAGSEDD---------- 291
Query: 245 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV 304
+M + M SD +++G + VL
Sbjct: 292 -------------VRRIMAHPVVMGGSD--------GGALGKPHPRSYGDFT---RVLGH 327
Query: 305 TWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354
+ RK ++LE+ + PA++ G +G IA G AD+VV++P+
Sbjct: 328 -YVRERK-LLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDT 375
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 40.7 bits (96), Expect = 8e-04
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 23/91 (25%)
Query: 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318
E G +D+LSSD+ P +SL L + G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277
Query: 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVV 349
+ S PA+ G +G+IA G ADL++
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL 308
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 360
L + + KYG++ E+ + PAK+ G + G++ G ADLVVW N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P+ K G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359
Score = 28.4 bits (64), Expect = 6.6
Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 43/175 (24%)
Query: 1 MPGLIDVHAHLD-DPGRTEWEG----------------------FPSGTKAAAAGGITTL 37
PGLID H+HL D E K A AGG+TT+
Sbjct: 28 TPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRARAGGVTTV 87
Query: 38 IDMPLNSDPSTISTETLKLKVDAAEKRIYV-DVGF-------------WGGLVPENAY-- 81
+P +++ +K E G G P
Sbjct: 88 QVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGV 147
Query: 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK-EGLSVLARYKRPLLVHA 135
A +A + A G K + + D P + +K E L + + + P+ +HA
Sbjct: 148 AALLRDAFIKAQEYGRKYDLGKNAKKDPPERD---LKLEALLPVLKGEIPVRIHA 199
>gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 377
Score = 38.1 bits (89), Expect = 0.006
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318
E G +D+LSSD+ P + L A ++ L ++L Q
Sbjct: 288 ELAQHGLLDILSSDYVP----------ASLLHAAFRLADLGS------------NISLPQ 325
Query: 319 LASWWSERPAKLAGQVSKGAIAIGNHADLV 348
+ ++ PA+ G +G IA G ADLV
Sbjct: 326 AVALVTKNPARALGLTDRGRIAPGLRADLV 355
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 36.9 bits (86), Expect = 0.014
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318
E +G +D+L+SD+ P + L A F L G+ L Q
Sbjct: 287 ELAHEGLLDVLASDYVP----------ASLLLA-------AFQLA-----DDVEGIPLPQ 324
Query: 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354
++ PA+ G +G+IA G ADLV
Sbjct: 325 AVKMVTKNPARAVGLSDRGSIAPGKRADLVRVHRVD 360
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 35.4 bits (82), Expect = 0.056
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 173 IRELLTVAKDTRTDGPAE--------GAHLHIVH-----LSDASSSLDLLMEAKTNGDSI 219
+R L V + D E GAH+HI H L D L L+ +A+ G +
Sbjct: 219 VRYLSNVDPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDV 278
Query: 220 TVETCPH 226
T E P+
Sbjct: 279 TTEAYPY 285
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 34.2 bits (79), Expect = 0.11
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI------DMPLNSDPSTISTETLKL 56
G ID H H P + E A A GITT+I + T +K
Sbjct: 130 GGIDTHVHFICPQQIE---------EALASGITTMIGGGTGPAAGTKATTCTPGPWNIKR 180
Query: 57 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98
+ AA+ + V++GF G N + AL + AG GLK
Sbjct: 181 MLQAADG-LPVNIGFLG---KGNGSSPDALAEQIEAGACGLK 218
Score = 28.4 bits (64), Expect = 8.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 337 GAIAIGNHADLVVWEPE 353
G++ +G ADLV+WEP
Sbjct: 423 GSVEVGKLADLVLWEPA 439
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 34.0 bits (79), Expect = 0.13
Identities = 32/139 (23%), Positives = 44/139 (31%), Gaps = 47/139 (33%)
Query: 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318
+ G +D+LSSD+ P +SL L + G+ L Q
Sbjct: 292 DLAAAGLLDILSSDYYP--------------------ASL---LDAAFRLADDGGLDLPQ 328
Query: 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 378
+ + PA+ AG +G IA G ADLV PV
Sbjct: 329 AVALVTANPARAAGLDDRGEIAPGKRADLVR------VRRAGGLPV-------------- 368
Query: 379 LSGKVLATISRGNLVYKEG 397
V A G V+ G
Sbjct: 369 ----VRAVWRGGRRVFLAG 383
>gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional.
Length = 568
Score = 34.1 bits (78), Expect = 0.16
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI---DMPLNSDPSTISTE---TLKL 56
G ID H H P + P+ A A G+TT+I P + +T T LK
Sbjct: 130 GGIDTHIHFISPQQ-----IPT----AFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 180
Query: 57 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 116
+ AAE+ +++GF G N+ N ++L + AG +G K I++ T S
Sbjct: 181 MLRAAEE-YSMNLGFLG---KGNSSNDASLADQIEAGAIGFK-------IHEDWGTTPSA 229
Query: 117 IKEGLSVLARYKRPLLVHAE 136
I L V +Y + +H +
Sbjct: 230 INHALDVADKYDVQVAIHTD 249
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of
proteins are related to a large superfamily of
metalloenzymes. TatD, a member of this family has been
shown experimentally to be a DNase enzyme.
Length = 255
Score = 33.0 bits (76), Expect = 0.22
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK- 63
ID H HLD E + A G+T ++ + E ++ A K
Sbjct: 1 IDAHCHLDFKDFD--EDRDEVIERAREAGVTAVVVV-------GTDLEDFLRALELARKY 51
Query: 64 --RIYVDVGF 71
++Y VG
Sbjct: 52 PGKVYAAVGV 61
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 32.9 bits (76), Expect = 0.28
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 349
G+ LE + A+ KG I G ADL+V
Sbjct: 320 DEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLV 358
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 32.8 bits (76), Expect = 0.36
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET-------- 53
G ID H H P + E A A G+TT+I + P+T + T
Sbjct: 129 AGGIDTHIHFICPQQIE---------EALASGVTTMIGG--GTGPATGTNATTCTPGPWH 177
Query: 54 LKLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 98
+ + AA+ +++GF G G NA ALE + AG +GLK
Sbjct: 178 IHRMLQAADA-FPMNIGFLGKG----NASLPEALEEQIEAGAIGLK 218
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal
ion (or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 32.3 bits (74), Expect = 0.42
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 1 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAAG---------GITTLIDM 40
MPGLID H HL D P + A G TT+ D
Sbjct: 12 MPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDA 62
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 32.4 bits (74), Expect = 0.45
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 237 DGDTRFKCAPPIRDAANKEKLWEA-LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295
D +F+ +R + ++L E + I SSD + ++P K + GN + G+
Sbjct: 249 SIDPQFRKEGEVRPSEALKRLLEQGVPLERITF-SSDGNGSLP--KFDENGNLVGL--GV 303
Query: 296 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
S+ +L + + LE + A++ KG I G ADLV+ + +
Sbjct: 304 GSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKD 361
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 32.1 bits (73), Expect = 0.49
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 263 DGHIDMLSSDHSPTVPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 321
G L SD + + + + ++LE+ +
Sbjct: 312 AGVKVALGSDAPVATYDPWSGIGAAVMRRTAEMLE--------GRVLKPDERLSLEEALA 363
Query: 322 WWSERPAKLAGQ-VSKGAIAIGNHADLVV 349
++ PA G KG +A+G ADLV+
Sbjct: 364 LYTRGPAYALGLEDRKGTLAVGKDADLVI 392
Score = 29.8 bits (67), Expect = 2.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1 MPGLIDVHAHLDDPG---RTEWEGFPSGTKAAAAGGI 34
+PG +D H HLD G E + +G+ A +
Sbjct: 3 LPGFVDPHTHLDGTGLNLGRELDLSGTGSVAGGLALL 39
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 31.6 bits (72), Expect = 0.74
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 1 MPGLIDVHAHL--DDPGRTEWE----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETL 54
PGLID H HL E+E G AA GGI L +T L
Sbjct: 63 TPGLIDAHTHLGFGGSRGGEFELREAGASYTEILAAGGGILPLD-----RGFTTARDGGL 117
Query: 55 KLKVDAAEKR 64
K KR
Sbjct: 118 KATALPRLKR 127
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 31.3 bits (71), Expect = 0.96
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 327 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386
AK G G++ +G ADLVV + H ++ S + V
Sbjct: 349 GAKALGLDDIGSLEVGKKADLVV------LDASAPHLAPLRPVSRLVFAAGGK--DVDRV 400
Query: 387 ISRGNLVYKEGNHA 400
+ G LV ++G
Sbjct: 401 LVDGRLVMEDGRLL 414
Score = 30.1 bits (68), Expect = 2.3
Identities = 31/178 (17%), Positives = 47/178 (26%), Gaps = 35/178 (19%)
Query: 1 MPGLIDVHAHLDD---------------PGRTEWEGFPSGTKA-------------AAAG 32
+PG ++ H HLD R W
Sbjct: 56 LPGFVNAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRN 115
Query: 33 GITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 90
G TT S L++ + A + DV F + E L
Sbjct: 116 GTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLR 175
Query: 91 NAGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH-AEMEKGSERHVK 146
A LG + P + E + +Y P+ +H AE ER ++
Sbjct: 176 EAHGLGRDVVGLAPHFPYTVSPELLESLDE---LARKYGLPVHIHLAETLDEVERVLE 230
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 31.0 bits (71), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39
PG ID+H H+ PG T + P G+TT++D
Sbjct: 53 PGWIDLHVHV-YPGSTPYGDEPDE--VGVRSGVTTVVD 87
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 30.5 bits (69), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39
PGLID+H H+ G TE P A G+TT++D
Sbjct: 57 PGLIDLHVHV-YYGGTEGGVRPD--MYGAPNGVTTVVD 91
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 30.0 bits (68), Expect = 2.7
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------L 54
G ID H H P + E A A GITT+I + P+ + T +
Sbjct: 130 GGIDTHIHFICPQQIE---------EALASGITTMIGG--GTGPADGTNATTCTPGPWHI 178
Query: 55 KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98
+ AA+ + +++GF G NA N + L + AG +GLK
Sbjct: 179 ARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQIEAGAIGLK 218
>gnl|CDD|216907 pfam02156, Glyco_hydro_26, Glycosyl hydrolase family 26.
Length = 309
Score = 29.7 bits (67), Expect = 2.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGT 26
G++ V H ++PG+ GF +G
Sbjct: 88 GIVQVSWHWNNPGKQWGRGFYTGA 111
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 30.0 bits (68), Expect = 2.9
Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 50/231 (21%)
Query: 171 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 230
A+ L + R +G I H S D + G + P++L
Sbjct: 345 GAVDAALDAFEKARKKNGLKGLRHRIEHAELV--SPDQIERFAKLG--VIASVQPNFLFS 400
Query: 231 SAEEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
E D G+ R + P R + G D + P
Sbjct: 401 DGEWYVDRLGEERASRSYPFRSLLKA----GVPLAGGSDAPVEPYDP------------- 443
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG---VTLEQLASWWSERPAKLAGQVS-KGAIAIGNH 344
W GI + V T +T E+ ++E A +G KG++ G
Sbjct: 444 ---WLGIYAA--VTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKL 498
Query: 345 ADLVVWE-PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
AD V + + D+ KV+ TI G +VY
Sbjct: 499 ADFAVLDRDPFTVDPDSIKDT-----------------KVVLTIVAGKVVY 532
Score = 28.8 bits (65), Expect = 6.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA 31
+PG +D H HL G + E G ++
Sbjct: 62 LPGFVDAHLHLISGGLSLLELNLDGVRSLDD 92
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 29.6 bits (67), Expect = 3.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 13/42 (30%)
Query: 295 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK-LAGQVS 335
+++L V+P+ W LA+WWS RP + LA QV
Sbjct: 198 LANLLLVIPLLW------------LAAWWSLRPIEALAKQVR 227
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 29.8 bits (68), Expect = 3.0
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 18/62 (29%)
Query: 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLV 393
+ G++ +G ADLV+W D P + Y G V + G +V
Sbjct: 362 THGSLEVGKKADLVIW--------DAPSPAEL------PYHFGVNP---VETVVKNGEVV 404
Query: 394 YK 395
Sbjct: 405 VD 406
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 29.5 bits (66), Expect = 3.2
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 328 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387
+ + + A A LV++ P EL + + HP I + V A
Sbjct: 142 NRALALLFQAADAAHGPKILVLYVPHPSDELAEE---LLSHPKIDLIVATGGRDAVDA-- 196
Query: 388 SRGNLVYKEGNHAPA 402
K H P
Sbjct: 197 -----AVKHSPHIPV 206
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates
adenine to form hypoxanthine. This reaction is part of
one of the adenine salvage pathways, as well as the
degradation pathway. It is important for adenine
utilization as a purine, as well as a nitrogen source
in bacteria and archea.
Length = 422
Score = 29.5 bits (67), Expect = 3.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI 49
PG ID H H++ T E F KA G TT+I +DP I
Sbjct: 9 PGFIDAHLHIESSMLTPSE-F---AKAVLPHGTTTVI-----ADPHEI 47
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 29.5 bits (67), Expect = 3.5
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 313 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 366
G LE+ S PAKL G KG++ G ADLVV LD+D V
Sbjct: 323 GCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVV--------LDDDLNVKA 369
>gnl|CDD|187686 cd09628, DOMON_SDR_2_like, DOMON domain of stromal cell-derived
receptor 2 (ferric chelate reductase 1) and related
proteins. Stromal cell-derived receptor 2 (or ferric
chelate reductase 1) reduces Fe(3+) to Fe(2+) ahead of
iron transport from the endosome to the cytoplasm. This
transmembrane protein is a member of the cytochrome b561
family and contains a DOMON domain which may bind to
heme or another ligand. DOMON-like domains can be found
in all three kindgoms of life and are a diverse group of
ligand binding domains that have been shown to interact
with sugars and hemes. DOMON domains were initially
thought to confer protein-protein interactions. They
were subsequently found as a heme-binding motif in
cellobiose dehydrogenase, an extracellular fungal
oxidoreductase that degrades both lignin and cellulose,
and in ethylbenzene dehydrogenase, an enzyme that aids
in the anaerobic degradation of hydrocarbons. The domain
interacts with sugars in the type 9 carbohydrate binding
modules (CBM9), which are present in a variety of
glycosyl hydrolases, and it can also be found at the
N-terminus of sensor histidine kinases.
Length = 169
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 201 DASSSLDLLMEAKTNGDSITVE-----TCPHYLA--FSAEEIPDGDTRFKCAPPIRDAAN 253
D S + L+ + +GDS+ E Y+A FS ++ D +C
Sbjct: 21 DPSKDCNFLVTYRVDGDSVEFELSGKTVDDGYVAVGFSDDKKMGDDDVVECVRDAGGRVE 80
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate
hydrolase (Imidazolone-5PH) catalyzes the third step in
the histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 29.5 bits (67), Expect = 3.7
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 1 MPGLIDVHAHLDDPG--RTEWE----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETL 54
PGL+D H HL G E+ G AA GGI + + + + L
Sbjct: 36 TPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVRATRAASEDELFASAL 95
Query: 55 K 55
+
Sbjct: 96 R 96
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 29.1 bits (66), Expect = 4.0
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 63
LID H HLD P A G+ +I + + S + E K
Sbjct: 1 LIDTHCHLDFP--QFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAK-----KYD 53
Query: 64 RIYVDVGF 71
+Y VG
Sbjct: 54 NVYAAVGL 61
>gnl|CDD|239318 cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily;
V-shaped homodimeric proteins containing a redox active
CXXC motif imbedded in a TRX fold. They function as
protein disulfide isomerases and chaperones in the
bacterial periplasm to correct non-native disulfide
bonds formed by DsbA and prevent aggregation of
incorrectly folded proteins. DsbC and DsbG are kept in
their reduced state by the cytoplasmic membrane protein
DsbD, which utilizes the TRX/TRX reductase system in the
cytosol as a source of reducing equivalents. DsbG differ
from DsbC in that it has a more limited substrate
specificity, and it may preferentially act later in the
folding process to catalyze disulfide rearrangements in
folded or partially folded proteins. Also included in
the alignment is the predicted protein TrbB, whose gene
was sequenced from the enterohemorrhagic E. coli type IV
pilus gene cluster, which is required for efficient
plasmid transfer.
Length = 197
Score = 28.8 bits (65), Expect = 4.5
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 211 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268
E K N D +TV +PD + A I A ++ K W M G
Sbjct: 98 ELKPNADGVTVR----IFPVPILGLPDSTAK---AAAIWCAKDRAKAWTDAMSGGKVP 148
>gnl|CDD|183966 PRK13309, ureC, urease subunit alpha; Reviewed.
Length = 572
Score = 29.1 bits (65), Expect = 5.2
Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 31/164 (18%)
Query: 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------LKLKV 58
ID H HL P + A + G+TT + T T ++ +
Sbjct: 136 IDTHIHLISPQQAY---------HALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQML 186
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
+ E + V+VG G N+Y L AGV G K D+ T A+ ++
Sbjct: 187 RSIEG-LPVNVGILG---KGNSYGRGPLLEQAIAGVAGYKVH------EDWGATAAA-LR 235
Query: 119 EGLSVLARYKRPLLVHAEM--EKGSERHVKLEDDTLDTRSYSTY 160
L V + VH + E G +V+ D + R+ T+
Sbjct: 236 HALRVADEVDIQVAVHTDSLNECG---YVEDTIDAFEGRTIHTF 276
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 28.7 bits (65), Expect = 5.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 328 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387
AK G G++ +G ADL++ +LD H + + P IS + G V I
Sbjct: 346 AKALGLDEIGSLEVGKKADLILI------DLDGPHLLPVHDP-ISHLVYSANGGDVDTVI 398
Query: 388 SRGNLVYKEG 397
G +V ++G
Sbjct: 399 VNGRVVMEDG 408
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 28.4 bits (64), Expect = 6.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE-PEAEFEL 358
+ L T S G+ LE++ + PA++ G G +A+G ADL V++ + EL
Sbjct: 263 YALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKDGRVEL 322
Score = 28.4 bits (64), Expect = 6.4
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSG----TKAAAAGGITTLIDMPLNSDPSTISTETLKLK 57
PG ID+H H+ ++G G+TT++D + + +
Sbjct: 34 PGWIDLHVHV-------YQGGTRYGDRPDMIGVKSGVTTVVDA---GSAGADNIDGFRYT 83
Query: 58 V-DAAEKRIY--VDVGFWGGLVPENAYN-----ASALEALLNAG---VLGLKSFMCPSGI 106
V + + R+Y +++ G + + + A+ A ++GLK+ S +
Sbjct: 84 VIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVV 143
Query: 107 NDF---PMTNASHIKEGLSVLARYKRPLLVH 134
++ P+ A I + + PL+VH
Sbjct: 144 GEWGIKPLELAKKIAKEADL------PLMVH 168
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 28.6 bits (64), Expect = 6.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 337 GAIAIGNHADLVVWEPE 353
G+I +G ADLV+WEP
Sbjct: 422 GSIEVGKLADLVLWEPA 438
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 28.2 bits (63), Expect = 7.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 39
PGLID HAH+ G EG G+TT++D
Sbjct: 56 PGLIDYHAHVFYDGT---EGGVRPDMYMPPNGVTTVVD 90
>gnl|CDD|219670 pfam07967, zf-C3HC, C3HC zinc finger-like. This zinc-finger like
domain is distributed throughout the eukaryotic kingdom
in NIPA (Nuclear interacting partner of ALK) proteins.
NIPA is implicate to perform some sort of antiapoptotic
role in nucleophosmin-anaplastic lymphoma kinase (ALK)
mediated signaling events. The domain is often repeated,
with the second domain usually containing a large insert
(approximately 90 residues) after the first three
cysteine residues. The Schizosaccharomyces pombe the
protein containing this domain is involved in mRNA
export from the nucleus.
Length = 132
Score = 27.4 bits (61), Expect = 8.4
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 265
D + E+C L + I D + E+ + L+ GH
Sbjct: 42 DMLKCESCGARLCYKLPNIVKLD------ESVYKKLV-EEYSKLLVTGH 83
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases.
YtcJ is a Bacillus subtilis ORF of unknown function.
The Arabidopsis homolog LAF3 has been identified as a
factor required for photochrome A signalling.
Length = 479
Score = 28.4 bits (64), Expect = 8.9
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 1 MPGLIDVHAHLDDPGRTE----WEGFPSGTKAAAA 31
+PG ID H+HL G + G S +A A
Sbjct: 37 LPGFIDSHSHLLLGGLSLLWLDLSGVTSKEEALAR 71
>gnl|CDD|223006 PHA03179, PHA03179, UL43 envelope protein; Provisional.
Length = 387
Score = 27.9 bits (62), Expect = 9.5
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 69 VGFWGGLV-PENAYNASALEALLNAGVLGL 97
+GF G +V P +AY AS L LL AGV GL
Sbjct: 43 LGFVGSVVLPRDAYAASPLPGLLLAGVAGL 72
>gnl|CDD|219278 pfam07040, DUF1326, Protein of unknown function (DUF1326). This
family consists of several hypothetical bacterial
proteins which seem to be found exclusively in Rhizobium
and Ralstonia species. Members of this family are
typically around 210 residues in length and contain 5
highly conserved cysteine residues at their N-terminus.
The function of this family is unknown.
Length = 183
Score = 27.6 bits (62), Expect = 9.7
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 13/88 (14%)
Query: 308 YGRKYGVTLEQLASWWSE------RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 361
+ + G AS E P + IG D EP E D
Sbjct: 83 FSGQAGGPFAVFASLVGEVLGVERAPIDFEIDGDARTVRIGGVIDAEG-EPIIEPVTGAD 141
Query: 362 HPVHMKHPSIS------AYLGRRLSGKV 383
+ P+ A + SG+
Sbjct: 142 GRARITLPNTGFETGPGATVAEAGSGRF 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.401
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,239,366
Number of extensions: 2059172
Number of successful extensions: 1590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 109
Length of query: 411
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 312
Effective length of database: 6,546,556
Effective search space: 2042525472
Effective search space used: 2042525472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)