RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015182
(411 letters)
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 475 bits (1226), Expect = e-167
Identities = 152/402 (37%), Positives = 215/402 (53%), Gaps = 24/402 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++DVH H ++PGRTEWEGF SG+K+ AAGG+TT DMPLNS+P TI+ E L K
Sbjct: 58 FPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQL 117
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A ++ VD FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G
Sbjct: 118 ANEKSLVDYRFWGGLVPG---NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKG 174
Query: 121 LSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
+ +A L VHAE E + Y + RP E A+ +L
Sbjct: 175 MKKIAALGSILAVHAESNEMVNALTTIAIEEQRL----TVKDYSEARPIVSELEAVERIL 230
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
A+ T +HI H+S L + +AK G +++VETCPHYL FS +E +
Sbjct: 231 RFAQLT-------CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE 282
Query: 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297
KCAPP+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+
Sbjct: 283 IGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAG 340
Query: 298 LQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAE 355
Q L V + G K + L Q+ S PAK G KG I +G A + +
Sbjct: 341 CQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNES 400
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ L+ ++ +HP IS Y+G+R GKV TI +G VY++
Sbjct: 401 YTLNASD-LYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQDH 440
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 472 bits (1218), Expect = e-166
Identities = 148/411 (36%), Positives = 215/411 (52%), Gaps = 28/411 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DA
Sbjct: 72 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDA 131
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASH 116
A+ ++ +D GGLV N L L GV+G K F+ G NDF N
Sbjct: 132 AKGKLTIDAAQLGGLVSY---NIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQ 188
Query: 117 IKEGLSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
+G L +P+LVH E K E + Y+ +RP E AI
Sbjct: 189 FFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRV----TAHDYVASRPVFTEVEAI 244
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
R +L +AK G LH+ H+S ++ + A+ G IT E+CPHY +
Sbjct: 245 RRVLYLAKVA-------GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTD 296
Query: 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 293
+ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN +KAWG
Sbjct: 297 QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWG 353
Query: 294 GISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
GI+ LQ + V + +K G++L + A + G KG IA G AD V +P
Sbjct: 354 GIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQP 413
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 403
+ + L ND + +H +S Y+GR + ++ TI RG+++Y P A
Sbjct: 414 NSSYVLTNDD-LEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVA 462
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 416 bits (1072), Expect = e-144
Identities = 117/415 (28%), Positives = 196/415 (47%), Gaps = 25/415 (6%)
Query: 1 MPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
MPG++D H H+ D + F +++AA GGITT+I+MP + P T + + K
Sbjct: 53 MPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKK 111
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A +R+ VD +GG VP N + + +AG +G KS M S F + + E
Sbjct: 112 QAGQRLKVDFALYGGGVPGNL---PEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFE 168
Query: 120 GLSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+A ++VHAE E + ++ +K + Y ++P E AI+
Sbjct: 169 IFQEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQENEAIQRA 224
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236
L + K+ G L ++H+S+ ++L+ +A++ G + E+ P YL + ++
Sbjct: 225 LLLQKEA-------GCRLIVLHVSNPDG-VELIHQAQSEGQDVHCESGPQYLNITTDDAE 276
Query: 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
K APP+R A +LWE L +G ID L SDH E K + KA G
Sbjct: 277 RIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGAL 336
Query: 297 SLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEA 354
L+ LP+ + G G ++LE+L E+PAKL G KG + +G+ ADL++ + +
Sbjct: 337 GLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDI 396
Query: 355 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 408
+ ++D H S + G ++G + T+ RG +V ++G G +
Sbjct: 397 DTKVDASQ-FRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 386 bits (994), Expect = e-132
Identities = 108/409 (26%), Positives = 178/409 (43%), Gaps = 30/409 (7%)
Query: 1 MPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
PG IDVH H++ + F + T AAA GG TT++D E +
Sbjct: 50 FPGGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWD 108
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
A + +D G+ ++ LE L + G+ K FM G M + +
Sbjct: 109 GMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLL 165
Query: 119 EGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
+ L + ++VHAE + ++ V E T + + +RPP E A
Sbjct: 166 KTLDKAVKTGSLVMVHAENGDAADYLRDKFVA-EGKT----APIYHALSRPPRVEAEATA 220
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
L +A+ A ++IVH++ SL+ +M AK+ G ETC HYL + E+
Sbjct: 221 RALALAEIV-------NAPIYIVHVT-CEESLEEVMRAKSRGVRALAETCTHYLYLTKED 272
Query: 235 IPDGD---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLK 290
+ D ++ PP R + + LW AL +G + +SSDH K +F
Sbjct: 273 LERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRA 332
Query: 291 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVV 349
G ++ L + + + ++L Q + RPAK+ G KG IA+G+ AD+V+
Sbjct: 333 IPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVL 392
Query: 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
W+PEAE ++ +H S+Y G ++ G + RG ++ EG+
Sbjct: 393 WDPEAEMVIEQTA-MHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGS 439
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 371 bits (956), Expect = e-126
Identities = 112/411 (27%), Positives = 189/411 (45%), Gaps = 32/411 (7%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HLD P G + F +GTKAAA GG T+++D L S +
Sbjct: 51 LPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWH 109
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHI 117
+ A + +D GF + N + LE+++N G+ LK FM M + +
Sbjct: 110 EKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKN---VLMADDETL 166
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
+ L + VHAE ++ +++ + E +T + TRPP E A
Sbjct: 167 FKTLIRAKELGALVQVHAENGDVLDYLTKQALA-EGNT----DPIYHAYTRPPEAEGEAT 221
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+ + A L++VH+S + ++ + EA+ G ++ ETCP YL
Sbjct: 222 GRAIALTALA-------DAQLYVVHVS-CADAVRRIAEAREKGWNVYGETCPQYLVLDIT 273
Query: 234 EIPDGD---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFL 289
+ D ++ +PP+R+ N++ LW AL +G + + SDH P K L +F
Sbjct: 274 ALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFT 333
Query: 290 KAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADL 347
K G ++ + + +S G RK ++L Q S + AKL G KG IA+G+ AD+
Sbjct: 334 KIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADI 393
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
V+++P + + + HM + + G ++ G V++ +SRG V +
Sbjct: 394 VLFDPTVQRTISVET-HHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQ 442
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 366 bits (942), Expect = e-124
Identities = 105/402 (26%), Positives = 168/402 (41%), Gaps = 29/402 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG ID H +PG T S ++AA AGG+T+ +DMP N++P T E L K
Sbjct: 59 FPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQI 117
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ + GF+ G +N ++ + V GLK F+ S N + +
Sbjct: 118 GADTAWANYGFFFGGTNDNI---DEIKRVDKHLVPGLKLFLGSSTGN----MLVDNKETL 170
Query: 121 LSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+ + H E + E + + LD + R + E
Sbjct: 171 EKIFGECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEA 227
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEI 235
+ +A+ A LHI+HLS L L + T IT E C H+L FS +
Sbjct: 228 VELAERM-------NARLHILHLSTEKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDY 279
Query: 236 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295
R K P I+ +++E L A+ +G ID++++DH+P + K EG+ L+A G
Sbjct: 280 GRLGNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGG 336
Query: 296 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355
+Q L + ++E++ S + PA L +G I G +ADLV+ +P +
Sbjct: 337 PLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSP 396
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ D+ + S + G S V T G L Y +G
Sbjct: 397 HTVSADN-ILSLC-GWSPFEGFTFSHSVAYTFVNGCLAYAKG 436
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 363 bits (935), Expect = e-123
Identities = 100/409 (24%), Positives = 172/409 (42%), Gaps = 30/409 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
PG ID H H+ P + + +G+KAA GG TT I+M + + E +L
Sbjct: 51 FPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWK 109
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
AE Y D F + + L ++ G+ K F+ F + +
Sbjct: 110 SKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMY 166
Query: 119 EGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
+ L + + H E + + ++ + E T + +RP + E
Sbjct: 167 QTLRLAKELGVIVTAHCENAELVGRLQQKLLS-EGKT----GPEWHEPSRPEAVEAEGTA 221
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
T + T GA ++VHLS +LD M AK G I +E+ +
Sbjct: 222 RFATFLETT-------GATGYVVHLS-CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY 273
Query: 235 IPDGDT---RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 291
G ++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F
Sbjct: 274 AERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAI 333
Query: 292 WGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 349
GI +++ + + ++YG + + + + S + AKL G KG IA+G+ ADLVV
Sbjct: 334 PNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVV 393
Query: 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
++P+ + H+ + + + G + G+ RG + ++G
Sbjct: 394 YDPQYRGTISVKT-QHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQ 440
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 364 bits (936), Expect = e-123
Identities = 104/422 (24%), Positives = 175/422 (41%), Gaps = 34/422 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
MPG ID H HL+ P G + F SGT+AA AGG T ++D L S P E L +
Sbjct: 49 MPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMWD 107
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
+ + + D F + + +E ++ + G+ K FM G M + +
Sbjct: 108 NKSTRA-NCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGA---LMVDDDEM 163
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
A LVHAE + + + + E ++ + +RP E A
Sbjct: 164 FSSFQRCAALGALPLVHAENGDVVAQLQAKLLA-EGNS----GPEAHAYSRPAEVEGEAA 218
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+ +A G ++IVH S + + + A+ G + E +L
Sbjct: 219 NRAIMIADMA-------GCPVYIVHTS-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDET 270
Query: 234 EIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
E D D R +PP R+ +++ LW L G + ++++DH E K G+F
Sbjct: 271 EYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFT 330
Query: 290 KAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADL 347
+ G L+ +P+ W+YG G +T+ + + S AK+ KGAI +G ADL
Sbjct: 331 RIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADL 390
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGS 406
VVW+P+ + + + G+ ++G T++RG + +EG G
Sbjct: 391 VVWDPKRSKTISAKT-QQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGE 448
Query: 407 PI 408
+
Sbjct: 449 FV 450
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 361 bits (929), Expect = e-121
Identities = 94/408 (23%), Positives = 158/408 (38%), Gaps = 25/408 (6%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H H+ P G + F GTKAA +GG T +ID + ++ E +
Sbjct: 82 LPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWR 140
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
A+ ++ D + + ++ L+ + GV K FM D M +
Sbjct: 141 SWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYK---DLYMVTDLEL 197
Query: 118 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
E S VHAE K T + RP + E A +
Sbjct: 198 YEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAI 256
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
T+A L+IVH+ + S+ ++ +A+ +G + E L +
Sbjct: 257 TIASAV-------NCPLYIVHVM-SKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWN 308
Query: 238 GD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
+ PP+R D + + L L + + +D+ K L + +F K
Sbjct: 309 KEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIP 368
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 350
G++ ++ + V W G G + + + S AK+ KG IA+G+ AD+V+W
Sbjct: 369 NGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIW 428
Query: 351 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+P+ + H + + G G L TISRG +VY+ G
Sbjct: 429 DPKGTRTISAKT-HHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGV 474
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 354 bits (911), Expect = e-119
Identities = 97/412 (23%), Positives = 159/412 (38%), Gaps = 33/412 (8%)
Query: 1 MPGLIDVHAHLD--DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG IDVH D G T + F GTKAA AGG T +ID + +P T
Sbjct: 77 IPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWR 135
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
+ A+ + D + + +EAL+ + GV +M D I
Sbjct: 136 EWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFK---DRFQLTDCQI 192
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
E LSV+ VHAE + + +R + L ++ +RP E A+
Sbjct: 193 YEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGIT-----GPEGHVLSRPEEVEAEAV 247
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+T+A T L+I + + SS +++ +A+ G + E L
Sbjct: 248 NRAITIANQT-------NCPLYITKVM-SKSSAEVIAQARKKGTVVYGEPITASLGTDGS 299
Query: 234 EIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
+ F +PP+ D + L L G + + S H K + + NF
Sbjct: 300 HYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNF 359
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
G + + + V W G + Q + S AK+ KG IA+G+ AD
Sbjct: 360 TLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDAD 419
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
LV+W+P++ + + + + G G L IS+G +V ++G
Sbjct: 420 LVIWDPDSVKTISAKT-HNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGT 469
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 352 bits (905), Expect = e-118
Identities = 88/411 (21%), Positives = 155/411 (37%), Gaps = 31/411 (7%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H H P G + F GT+AA AGG T +ID + E
Sbjct: 59 LPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWK 117
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHI 117
A++++ D + + + +E L+ GV K FM M +
Sbjct: 118 KWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSF---MVTDQEM 174
Query: 118 KEGLSVLARYKRPLLVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
VHAE M ++ + T + +RP + E A
Sbjct: 175 YHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGIT----GPEGHELSRPEALEAEATN 230
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
+ +A ++IVH+ + + D++ + + G + E L
Sbjct: 231 RAIVIADSV-------CTPVYIVHVQ-SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSH 282
Query: 235 IPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
+ + D F PPIR D K L + L G +D + +D+ + K + + +F
Sbjct: 283 MWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFT 342
Query: 290 KAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADL 347
K G++ ++ + + W G +T Q S A++ KG I +G D+
Sbjct: 343 KIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDI 402
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
V+W+P + D H + + G +++G + TI GN+V+ +
Sbjct: 403 VIWDPNQSKTISKDT-HHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNK 451
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 317 bits (813), Expect = e-103
Identities = 100/482 (20%), Positives = 172/482 (35%), Gaps = 92/482 (19%)
Query: 1 MPGLIDVHAHLDDPGRTEWEG---FPSGTKAAAAGGITTLIDMPLN----SDPSTISTET 53
PG ID H H+D+P + + T++A AGG TT++ PS ++
Sbjct: 54 TPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESV 113
Query: 54 LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALE--------ALLNAGVLGLKSFMCPSG 105
+ +E+ +Y D G L + A E A + GV +K FM G
Sbjct: 114 KLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG 173
Query: 106 INDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYL 161
+ + I + + ++HAE ++ E + +
Sbjct: 174 L----QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE-----QGLTDAYYHG 224
Query: 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITV 221
+RP E A +T+A + VH+S + + +++ +A+T G +
Sbjct: 225 VSRPSIVEGEATNRAITLATTM-------DTPILFVHVS-SPQAAEVIKQAQTKGLKVYA 276
Query: 222 ETCPHYLAFSAE------------------------------EIPDGDTRFKCAPPIRDA 251
ETCP Y S + +++ C+PPIR
Sbjct: 277 ETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPE 336
Query: 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELK-------------LLDEGNFLKAWGGISSL 298
++ +W+ + +G ++ SDH K G F G+ +
Sbjct: 337 GTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGV 396
Query: 299 QFVLPVTWSYGRKYG--VTLEQLASWWSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEA 354
+P+ + YG G ++ +L PAK+ G KG+I G ADLV+W P+
Sbjct: 397 CTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDD 456
Query: 355 EFELDNDHPV-------HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGS 406
+ N P + + G + TI +G +VYKEG A G
Sbjct: 457 SKKEYNSKPKLITNKLMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGK 515
Query: 407 PI 408
+
Sbjct: 516 YL 517
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 229 bits (587), Expect = 2e-71
Identities = 103/419 (24%), Positives = 180/419 (42%), Gaps = 68/419 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +DVH HL +PG E +GTKAAA GG TT+ MP N+ P S E +
Sbjct: 51 SPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKL 109
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
+ V V G + + AL+ G +D +
Sbjct: 110 IDDNAQVRVLPYASITTRQLGKELVD-------FPALVKEGAFAFT--------DDGVGV 154
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKT 163
AS + EG+ A+ + ++ H E D++L RS +
Sbjct: 155 QTASMMYEGMIEAAKVNKAIVAHCE------------DNSLIYGGAMHEGKRSKELGIPG 202
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
P E I R++L +A+ G H H+ H+S S + ++ +AK G +T E
Sbjct: 203 IPNICESVQIARDVL-LAEAA-------GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAE 253
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L + ++IP + +K PP+R ++E L E L+DG ID +++DH+P + K
Sbjct: 254 VTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA 313
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
KA GI + P+ +++ + TL+QL + + +P + + G +
Sbjct: 314 QP---MEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKE 369
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 397
+ADL + + ++E E+ + S + ++G ++ G + T+ G + ++
Sbjct: 370 NGYADLTIIDLDSEQEIKGE-----DFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 229 bits (586), Expect = 2e-71
Identities = 110/420 (26%), Positives = 181/420 (43%), Gaps = 68/420 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PGL+DVH HL +PG E +GT AAA GG TT+ MP N+ P E ++ +
Sbjct: 52 APGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNR 110
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
+++ +V+V G + + E L G +D +
Sbjct: 111 IKEKAHVNVLPYGAITVRQAGSEMTD-------FETLKELGAFAFT--------DDGVGV 155
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKT 163
+AS + + A+ ++ H E ++TL S L
Sbjct: 156 QDASMMLAAMKRAAKLNMAVVAHCE------------ENTLINKGCVHEGKFSEKHGLNG 203
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
P E I R++L +A+ H H+ H+S S + ++ +AK G +T E
Sbjct: 204 IPSVCESVHIARDIL-LAEAA-------DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAE 254
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L ++IP D FK PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 255 VTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA 314
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
+A GI+ + P+ ++ +K +TLEQL + +E+PA G + G +
Sbjct: 315 QG---IERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKE 370
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEGN 398
G AD+ + + E E E+D S + G + G + TI G + +++ +
Sbjct: 371 GRTADITIIDLEQEEEIDPT-----TFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 230 bits (589), Expect = 3e-71
Identities = 116/416 (27%), Positives = 191/416 (45%), Gaps = 67/416 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG ID+H HL DPG+T E SG++ A AGG TT++ MP N++P +T + +
Sbjct: 99 CPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQK 157
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
++ V G G + + +L AG + +D P+
Sbjct: 158 SKSVGLCRVLPTGTITKGRKGKEIAD-------FYSLKEAGCVAFT--------DDGSPV 202
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-------DTRSYSTYLKTR 164
++S +++ L + ++ P++ H E DD L S L +R
Sbjct: 203 MDSSVMRKALELASQLGVPIMDHCE------------DDKLAYGVINEGEVSALLGLSSR 250
Query: 165 PPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223
P EE I R+ + +A+ T G H+HI H+S S L+++ K G IT E
Sbjct: 251 APEAEEIQIARDGI-LAQRT-------GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEV 301
Query: 224 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
P++L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L
Sbjct: 302 NPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL 361
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 343
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+
Sbjct: 362 ----VEFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGS 416
Query: 344 HADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKE 396
AD+ +++P E+ L+ + + S S G+ L GKV+ TI G +VYK+
Sbjct: 417 PADITIFDPNKEWILNEE-----TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 220 bits (562), Expect = 1e-67
Identities = 113/419 (26%), Positives = 174/419 (41%), Gaps = 63/419 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +D+HAHL +PG E SG AA GG T L+ MP N+ P + E ++ +
Sbjct: 48 APGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEK 106
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
A+ + G + L AG + L +D
Sbjct: 107 AKALGLARLHPAAALTEKQEGKTLTP-------AGLLREAGAVLLT--------DDGRTN 151
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR------SYSTY--LKT 163
+A + GL + A P+ VHAE D L + L
Sbjct: 152 EDAGVLAAGLLMAAPLGLPVAVHAE------------DAGLRRNGVMNDGPLADLLGLPG 199
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
PP E A I R+L + R LH+ HLS L+L+ EAK G +T E
Sbjct: 200 NPPEAEAARIARDLEVLRYALRR--SPATPRLHVQHLSTKRG-LELVREAKRAGLPVTAE 256
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L + E + D FK APP+R ++E L E L+DG +D +++DH+P K
Sbjct: 257 ATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKE 316
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
D L+A GI SL+ P+ ++ K G L++L +++ P ++ G + +
Sbjct: 317 KD---LLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEE 372
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 397
G A LV+ P+ E +D S + + G L G + T+ G +V++
Sbjct: 373 GAEASLVLLSPK-ERPVDPS-----AFASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 96.8 bits (241), Expect = 3e-22
Identities = 52/402 (12%), Positives = 111/402 (27%), Gaps = 86/402 (21%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLK 57
PG ID H HL G + A + G+T+++ + +D + E+L K
Sbjct: 61 CPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAK 119
Query: 58 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 117
A + G + ++E + + + + A +
Sbjct: 120 TRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDV 175
Query: 118 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
++ A + L+ K + D + A++ +
Sbjct: 176 YHLANMAAESRVGGLLG---GKPGVTVFHMGD-------------------SKKALQPIY 213
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
+ ++ + L H++ + +E G +I + +
Sbjct: 214 DLLENCDV----PISKLLPTHVNRNVPLFEQALEFARKGGTIDITS-------------- 255
Query: 238 GDTRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
P+ A + + + + S + + G++
Sbjct: 256 -----SIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVA 305
Query: 297 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEF 356
+ +L + Y ++ + A KG I GN ADL+V PE
Sbjct: 306 GFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR- 364
Query: 357 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+ +RG L+ K+G
Sbjct: 365 --------------------------IEQVYARGKLMVKDGK 380
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 87.0 bits (215), Expect = 1e-18
Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 68/389 (17%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETL 54
G ID H H +P A A GITTL + +T +
Sbjct: 130 TAGGIDTHVHFINP---------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNI 180
Query: 55 KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
+ + + E + ++VG G + + + + ++AG GLK D+ T A
Sbjct: 181 EKMLKSTE-GLPINVGILGKG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA 230
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
I L+V + +H++ + +DTL + E A
Sbjct: 231 -SIDRSLTVADEADVQVAIHSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGG 282
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE- 233
+ G + ++ + + E +
Sbjct: 283 HAPDIMAMA-------GHPNVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLK 326
Query: 234 -EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
IP+ D F + + E + L G I M+S+D L+ W
Sbjct: 327 QNIPE-DVAFADSRIRPETIAAEDILHDL--GIISMMSTDALAMGR-----AGEMVLRTW 378
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 350
++ L++ S ++ PA G G+I G ADLV+W
Sbjct: 379 QTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLW 438
Query: 351 EPE-----AEFELDNDHPVH--MKHPSIS 372
EP+ A+ + + + PS S
Sbjct: 439 EPKFFGVKADRVIKGGIIAYAQIGDPSAS 467
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 84.2 bits (208), Expect = 4e-18
Identities = 49/418 (11%), Positives = 99/418 (23%), Gaps = 101/418 (24%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS----TETLKL 56
PGL+D H H+ + +A GG+TT+I P K
Sbjct: 60 TPGLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG---SPHFPGRPKDAAGTKA 116
Query: 57 KVDAAEKRIYVDV-----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 111
K Y G ++ E + GV + I +
Sbjct: 117 LAITLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED 175
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171
+ ++ + +H DD + T+ P
Sbjct: 176 -----AAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAI 228
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231
+++E+ + +T + IV + + + A G + F
Sbjct: 229 SVQEVDRIMDET-------DFAMEIVQCGNPKIADYVARRAAEKG-------QLGRVIFG 274
Query: 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 291
+ + G + ++
Sbjct: 275 NDAPSGTG--------------------LIPLGILRN----------MCQIA-------- 296
Query: 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
+ E + + G ++ G IA G ADL++
Sbjct: 297 ------------------SMSDIDPEVAVCMATGNSTAVYG-LNTGVIAPGKEADLII-- 335
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
+D + + G + + G V + + P A + +
Sbjct: 336 ------MDTPLGSVAEDAMGAIAAGDIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 81.0 bits (199), Expect = 6e-17
Identities = 69/412 (16%), Positives = 118/412 (28%), Gaps = 100/412 (24%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
G ID H H + ++ + G+TT+ID + I +
Sbjct: 53 SAGWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAK 108
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNA--------GVLGLKSFMCPSGINDFPMT 112
V++ WG + + + S ++A L V+G+K+ M + I D +T
Sbjct: 109 TNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGIT 168
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
K+ PL+VH + PP +E
Sbjct: 169 PLELAKQIQQENQEI--PLMVHIG--------------------------SAPPHLDE-- 198
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
I L+ K G I+ + D +A G + + +F+
Sbjct: 199 ILALM--EKGDVLTHCFNGKENGILDQATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNF 253
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
AL +G D +
Sbjct: 254 HVA----------------------ETALREG-----------MKAASISTDIYIRNREN 280
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
G + L T R G ++ ++ PA+ KG + IG ADL ++
Sbjct: 281 GPVYD----LATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTI 336
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGNHA 400
+AE + D G + + TI G + EG+H
Sbjct: 337 QAEEKTLTD------------SNGLTRVAKEQIRPIKTIIGGQIYDNEGHHH 376
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 78.9 bits (194), Expect = 5e-16
Identities = 74/372 (19%), Positives = 117/372 (31%), Gaps = 79/372 (21%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETL 54
G ID H H P A A G+TT+I T +T L
Sbjct: 129 TAGGIDTHIHFIS---------PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNL 179
Query: 55 KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
K + AAE+ +++GF NA N ++L + AG +G K D+ T
Sbjct: 180 KWMLRAAEE-YSMNLGFLA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTP 228
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
S I L V +Y + +H DTL+ EA
Sbjct: 229 SAINHALDVADKYDVQVAIH--------------TDTLN----------------EAGCV 258
Query: 175 ELLTVAKDTR------TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 228
E A R T+G G I+ ++ + L T ++ E +
Sbjct: 259 EDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDM 317
Query: 229 AFSAE----EIPDGDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
I + D +F + A ++ L + G + SSD
Sbjct: 318 LMVCHHKDKSIKE-DVQFADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGR 368
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAI 341
+ W + +++ S ++ PA G G++ +
Sbjct: 369 VGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEV 428
Query: 342 GNHADLVVWEPE 353
G ADLV+W P
Sbjct: 429 GKVADLVLWSPA 440
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 63.2 bits (153), Expect = 6e-11
Identities = 70/364 (19%), Positives = 116/364 (31%), Gaps = 63/364 (17%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLK 55
G ID H H P + E A G+TT++ P +T T
Sbjct: 127 TAGGIDTHIHWICPQQAEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYI 177
Query: 56 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 115
++ A + V++G G N AL + AGV+GLK +
Sbjct: 178 SRMLQAADSLPVNIGLLGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------A 227
Query: 116 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175
I L+V + +H++ + +DTL T +
Sbjct: 228 AIDCALTVADEMDIQVALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPD 283
Query: 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235
++T P L +++D ++ C H AE++
Sbjct: 284 IITACAH-----PNILPSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDV 330
Query: 236 PDGDTRFKCAPPIRDAANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLK 290
++R + + L D G + SSD V E+ L + +K
Sbjct: 331 AFAESRIRRETIAA--------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMK 382
Query: 291 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 349
G L G +++ + ++ PA G G+I +G ADLVV
Sbjct: 383 VQRGA------LAEE--TGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVV 434
Query: 350 WEPE 353
W P
Sbjct: 435 WSPA 438
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 59.3 bits (143), Expect = 7e-10
Identities = 57/410 (13%), Positives = 113/410 (27%), Gaps = 91/410 (22%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +D+H H+ G + ++ A G+TTL+D + + + ++
Sbjct: 70 SPGWVDLHVHIWHGGT---DISIRPSECGAERGVTTLVDAGSAGEANF--HGFREYIIEP 124
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ +RI A LN G +GL + + D + I E
Sbjct: 125 SRERIK---------------------AFLNLGSIGLVACNRVPELRDIKDIDLDRILEC 163
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ + + L V A SW ++ +A
Sbjct: 164 YAENSEHIVGLKVRAS-------------------------HVITGSWGVTPVKLGKKIA 198
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K + VH+ + + D ++E GD +T H + D
Sbjct: 199 KIL-------KVPMM-VHVGEPPALYDEVLEILGPGDVVT-----HCFNGKSGSSIMEDE 245
Query: 241 RFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFL-------KAW 292
+G +D+ S + + L
Sbjct: 246 DLFNL-----------AERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHG 294
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
++ + L T S + E + + PA + + + +G AD V++
Sbjct: 295 HSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDL 354
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 402
D + + +RL + + + A
Sbjct: 355 V-------DADLEATDSNGDVSRLKRL-FEPRYAVIGAEAIAASRYIPRA 396
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 58.9 bits (142), Expect = 8e-10
Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)
Query: 6 DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 64
D H HL R +G + I MP N P + E A +R
Sbjct: 14 DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61
Query: 65 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 116
I D ++ + + LE N G K + + + +T+
Sbjct: 62 ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121
Query: 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
I L + + PLLVH E+ E ++ +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236
+ + + H++ + D + + + P +L F+ +
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211
Query: 237 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 293
G R C P ++ +++ L E + G L +D +P K G
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266
Query: 294 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 329
G + L + + L+ ++ S +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 45.0 bits (106), Expect = 3e-05
Identities = 73/427 (17%), Positives = 122/427 (28%), Gaps = 117/427 (27%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGT--------------------------KAAAAGGI 34
PG +D H+H+ G E + + A AGG+
Sbjct: 56 FPGFVDAHSHI---GLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGV 112
Query: 35 TTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 94
T+++ +P +++P +K + E+ I V GL G
Sbjct: 113 TSVMIVPGSANPVGGQGSVIKFRSIIVEECI---VKDPAGLKM-------------AFGE 156
Query: 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154
+ + M A I++ + + Y + + ++G E +
Sbjct: 157 NPKRVYGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELA--QKEGKEFTETDLKMEVGE 214
Query: 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 214
+ R + I + +A++ G +L I H ++A +L E K
Sbjct: 215 MVLRKKIPARMHAHRADDILTAIRIAEEF-------GFNLVIEHGTEAYKISKVLAEKKI 267
Query: 215 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 274
P R K KL + G + L DH
Sbjct: 268 P----------------VVVGPLLTFRTKLELKDLTMETIAKLLKD---GVLIALMCDHP 308
Query: 275 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 334
E + + +YG E L + PAK+ G
Sbjct: 309 VIPLEFATVQAATAM---------------------RYGAKEEDLLKILTVNPAKILGLE 347
Query: 335 SK-GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393
+ G+I G ADLVVW + HP MK V G V
Sbjct: 348 DRIGSIEPGKDADLVVW---------SGHPFDMKS-------------VVERVYIDGVEV 385
Query: 394 YKEGNHA 400
++ H
Sbjct: 386 FRREGHH 392
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 43.1 bits (101), Expect = 1e-04
Identities = 68/483 (14%), Positives = 121/483 (25%), Gaps = 141/483 (29%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID------------------MPLN 43
PG ID H H D + G+TT++ + L
Sbjct: 74 PGFIDSHTHDD--NYLLKHR---DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLL 128
Query: 44 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA------------------ 85
+ + ++A +V + A+
Sbjct: 129 DEGGSFRFARFSDYLEALRAAPPA--VNAACMVGHSTLRAAVMPDLRREATADEIQAMQA 186
Query: 86 -LEALLNAGVLGLKSFMCPSGINDFPMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSE 142
+ L +G +G +G P +AS I E L + H E
Sbjct: 187 LADDALASGAIG-----ISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDE---- 237
Query: 143 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 202
A+ E + ++ + I H
Sbjct: 238 -----------------------GEHIVQALEETFRIGREL-------DVPVVISHHKVM 267
Query: 203 SSS--------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK 254
L L+ A + D ++++ P Y+A S D
Sbjct: 268 GKLNFGRSKETLALIEAAMASQD-VSLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYP 325
Query: 255 EKLWEALMDG------HIDMLSSDHSPTVPELKLLDEGNFLKAWG---------GISSLQ 299
E L + + + P ++DE + + G+ +
Sbjct: 326 ELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDE 385
Query: 300 FVLPVTWS--------YGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 350
P W Y R G+ LE + A G +G + G +ADLVV+
Sbjct: 386 RPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVF 445
Query: 351 EPE-----AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACG 405
+P A FE + + G V+++ + G
Sbjct: 446 DPATVADSATFEHPTERAAGIHS-----------------VYVNGAAVWEDQSFTGQHAG 488
Query: 406 SPI 408
+
Sbjct: 489 RVL 491
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 42.6 bits (100), Expect = 2e-04
Identities = 77/402 (19%), Positives = 124/402 (30%), Gaps = 77/402 (19%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM-----------------PLNS 44
PG IDVH H D + + + GITT++ L
Sbjct: 60 PGFIDVHGHDDLMFVEKPDLRWK-----TSQGITTVVVGNCGVSAAPAPLPGNTAAALAL 114
Query: 45 DPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASA------------------ 85
T + A + + ++V LV +A
Sbjct: 115 LGETPLFADVPAYFAALDAQRPMINVAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQD 171
Query: 86 -LEALLNAGVLGLKSFMCPSGINDFPMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS- 141
L+A L AG +G + + P A ++ V A +R H E
Sbjct: 172 MLQAALEAGAVGFSTGLAY-----QPGAVAQAAELEGLARVAAERRRLHTSHIRNEADGV 226
Query: 142 ----ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 197
E + + T S + P +W R L R G ++
Sbjct: 227 EAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGR--SRATLANIDRAREQGVEVALDIY-- 282
Query: 198 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 257
SS L+ E D I + + S E + D R+ C AA +
Sbjct: 283 --PYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKT--TAARRLAP 338
Query: 258 WEALMDGHID-----MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312
A+ + + + D + WG S VL Y R+
Sbjct: 339 AGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWG---SFTRVLG---RYVREA 392
Query: 313 GV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
+ TLEQ + + PA++ G +G + G AD+VV++P+
Sbjct: 393 RLMTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPD 434
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 5e-04
Identities = 46/266 (17%), Positives = 79/266 (29%), Gaps = 89/266 (33%)
Query: 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKV 58
I V + P + PS + + PS ++ E ++ V
Sbjct: 306 IGVRCYEAYPNTSLP---PSILEDSLENNEGV---------PSPMLSISNLTQEQVQDYV 353
Query: 59 DA------AEKRIYVDVGFWGGLVPENAYN-------ASALEALLNAGVLGLKSFMCPSG 105
+ A K++ + LV N +L L L L+ PSG
Sbjct: 354 NKTNSHLPAGKQVEI------SLV--NGAKNLVVSGPPQSLYGL----NLTLRKAKAPSG 401
Query: 106 INDFPMTNASHIK----------EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155
++ S I L V + + LLV A + +D
Sbjct: 402 LD------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS-------DLINKD------ 442
Query: 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN 215
L S+ I+ + V DT G+ L ++ S + +D ++
Sbjct: 443 -----LVKNNVSFNAKDIQ--IPV-YDTFD-----GSDLRVLSGSISERIVDCIIRLPVK 489
Query: 216 GDSITVETCPHYLAFSAEEIPDGDTR 241
++ T H L F P G +
Sbjct: 490 WETTTQFKATHILDFG----PGGASG 511
Score = 37.7 bits (87), Expect = 0.007
Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 78/204 (38%)
Query: 60 AAEKRIYVDVGFWGGLVPENAYNA-------SALEALLNAGVLGLKSFMCPSGINDFPMT 112
EK + D+ G L+P +A A +AL +L A V+ S
Sbjct: 1738 LMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALASL--ADVM---SI------------ 1779
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY--LKTRP----P 166
+ + V+ + R + + + + S Y + P
Sbjct: 1780 -----ESLVEVV--FYRGMTMQVAVPRDELGR-------------SNYGMIAINPGRVAA 1819
Query: 167 SWEEAAIRELL-TVAKDTRTDGPAE--------------GAHLHIVHLSDASSSLDLLME 211
S+ + A++ ++ V K RT E G + L ++ L+ +
Sbjct: 1820 SFSQEALQYVVERVGK--RTGWLVEIVNYNVENQQYVAAG---DLRALDTVTNVLNFIKL 1874
Query: 212 AKTNGDSITVETCPHYLAFSAEEI 235
K I + + S EE+
Sbjct: 1875 QK-----IDIIELQK--SLSLEEV 1891
Score = 34.6 bits (79), Expect = 0.067
Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 111/278 (39%)
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-------NAGVLGLKSFMCPSGINDFPM 111
+ K + V F+ G+ AY ++L + N GV PS PM
Sbjct: 294 VSVRK--AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV--------PS-----PM 338
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171
LS+ + + + + +V + L P+ ++
Sbjct: 339 ---------LSI-SNLTQEQV---------QDYVNKTNSHL-------------PAGKQV 366
Query: 172 AI-----RELLTVAKDTRTDGPAE---GAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223
I + L V+ GP + G +L + A S LD +++
Sbjct: 367 EISLVNGAKNLVVS------GPPQSLYGLNLTLRKAK-APSGLD---QSRI--------- 407
Query: 224 CPHYLAFSAEEIPDGDTRFKCAPPI---------RDAANKEKLWEALMDGHIDMLSSD-- 272
P FS E RF P+ A+ + + + L+ ++ + D
Sbjct: 408 -P----FS-ERKLKFSNRFL---PVASPFHSHLLVPAS--DLINKDLVKNNVSFNAKDIQ 456
Query: 273 ----HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 306
+ +L++L G+ + I LPV W
Sbjct: 457 IPVYDTFDGSDLRVLS-GSISER---IVDCIIRLPVKW 490
Score = 32.3 bits (73), Expect = 0.32
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 29/139 (20%)
Query: 163 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGD--SI 219
TRP + ++ +L V P + L + + L E D +
Sbjct: 6 TRPLTLSHGSLEHVLLV--------PT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD--HS--- 274
E +L + + + + L L + L + H+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKV----------GQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 275 --PTVPELKLLDEGNFLKA 291
+ L+ +K
Sbjct: 107 KLLQENDTTLVKTKELIKN 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 45/343 (13%), Positives = 95/343 (27%), Gaps = 90/343 (26%)
Query: 39 DMPLNSDPSTISTETLK--LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 96
DMP S +S E + + A FW LL+
Sbjct: 40 DMPK----SILSKEEIDHIIMSKDAVSGTLRL--FW---------------TLLSKQEEM 78
Query: 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156
++ F+ + N + + ++P + E+ +L +D +
Sbjct: 79 VQKFV-----EEVLRINYKFLMSPIK--TEQRQPSM---MTRMYIEQRDRLYNDN---QV 125
Query: 157 YSTYLKTRPPSWEE--AAIREL------------------LT--VAKDTRT-DGPAEGAH 193
++ Y +R + + A+ EL + V +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 194 -LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY--LAFSAEEIPDGDTRFKCAPP--- 247
L++ + + + L++L + D H + I R + P
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 248 ----IRDAANKEKLWEALMDGHIDML--SSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 301
+ + N K W A + +L + T +FL ++ +
Sbjct: 246 CLLVLLNVQNA-KAWNA-FNLSCKILLTTRFKQVT----------DFLS--AATTTHISL 291
Query: 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG---AIAI 341
+ + L + RP L +V ++I
Sbjct: 292 DHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 38.7 bits (91), Expect = 0.003
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 372
G ++ +LA S G +G IA G ADLV+ LD D
Sbjct: 319 GCSITELAKVSSYNSCVELGLDDRGRIAEGTRADLVL--------LDEDL---------- 360
Query: 373 AYLGRRLSGKVLATISRGNLVYK 395
V+ TI G +V++
Sbjct: 361 ---------NVVMTIKEGEVVFR 374
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 38.5 bits (89), Expect = 0.003
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PGLID H H++ T + A A G+TT++ P + + ++ A
Sbjct: 88 SPGLIDTHMHIESSMIT-PAAY---AAAVVARGVTTIVWDPH-EFGNVHGVDGVRWAAKA 142
Query: 61 AEKRIYVDVGFWGGLVPENAY--------NASALEALLNAG-VLGLKSFMCPSGI 106
E + VP +A+ L LL+ + G+ M G+
Sbjct: 143 IENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGV 197
Score = 30.8 bits (69), Expect = 0.97
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
+YG+ E + A+ G+ G IA G AD+VV+E F
Sbjct: 314 RYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFEDLNGFS 360
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 36.9 bits (86), Expect = 0.009
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 1 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 40
MPGLID+H H+ + P+ A G TT+ D
Sbjct: 58 MPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDA 108
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 36.6 bits (85), Expect = 0.011
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 1 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 40
MPG ID H H+ + P+ A + G T++ D
Sbjct: 58 MPGFIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDA 108
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 35.4 bits (82), Expect = 0.027
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 1 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 40
+PGL+D H H+ +D E S G TT+ ++
Sbjct: 57 IPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNV 107
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 35.2 bits (82), Expect = 0.028
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 313 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 371
G+ L+++ + PA+ G + G +A G A+L D
Sbjct: 325 GIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTA--------FTPD---------- 366
Query: 372 SAYLGRRLSGKVLATISRGNLVYKE 396
K+ TI GN V +
Sbjct: 367 ---------FKITKTIVNGNEVVTQ 382
Score = 31.8 bits (73), Expect = 0.35
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 16/71 (22%)
Query: 2 PGLIDVHAH-------LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STE 52
PG IDV + D E KA G T + P+ I S E
Sbjct: 53 PGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYL-------PTLITTSDE 105
Query: 53 TLKLKVDAAEK 63
+K V +
Sbjct: 106 LMKQGVRVMRE 116
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 35.3 bits (82), Expect = 0.036
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 313 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 371
+ +A+ SE AK G KG++ +G ADLV+ + +D
Sbjct: 333 NCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVI--------VSSDC--------- 375
Query: 372 SAYLGRRLSGKVLATISRGNLVYK 395
+V+ TI RGN+ +
Sbjct: 376 ----------EVILTICRGNIAFI 389
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 35.0 bits (81), Expect = 0.041
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 1 MPGLIDVHAHL---DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 40
+PGLID+H HL + G + + G TT+ ++
Sbjct: 57 LPGLIDMHVHLDSLAEVGGYNSLEYSDRFWSVVQTANAKKTLEAGFTTVRNV 108
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 34.7 bits (80), Expect = 0.058
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 12/52 (23%)
Query: 1 MPGLIDVHAHL---DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 40
+PGL+D+H H +A A G TT+ +
Sbjct: 62 LPGLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQV 113
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 32.5 bits (74), Expect = 0.27
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 337 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
G + +G AD +VW + HP +S +G +++ + G
Sbjct: 365 GQLRVGMLADFLVW--------NCGHPAE-----LSYLIGVDQ---LVSRVVNGEETLHG 408
Query: 397 GNH 399
H
Sbjct: 409 EGH 411
Score = 28.7 bits (64), Expect = 4.1
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLI 38
PGLID H HL G E G P A GGI + +
Sbjct: 65 TPGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTV 108
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 32.2 bits (73), Expect = 0.32
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 21/104 (20%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------LK 55
G ID H H P A + GITTL+ T +T ++
Sbjct: 401 AGAIDCHVHYICPQLVY---------EAISSGITTLVGGGTGPAAGTRATTCTPSPTQMR 451
Query: 56 LKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 98
L + + + + ++ GF G G ++ L ++ AG +GLK
Sbjct: 452 LMLQSTD-DLPLNFGFTGKG----SSSKPDELHEIIKAGAMGLK 490
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 31.1 bits (70), Expect = 0.50
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 3 GLIDVHAHL----DDPGRTEWEGFPSGTKAAAAGGITTLIDMP------LNSDPSTISTE 52
G+ID+H+H+ DD G E + + G+ T++ + I+
Sbjct: 4 GMIDIHSHIVFDVDD-GPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAEN 62
Query: 53 TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL--KSFMCPSGINDFP 110
L+++ A E + + + G E Y L+ L + L + + +F
Sbjct: 63 FLQVREIAKEVASDLVIAY-GA---EIYYTPDVLDKLEKKRIPTLNDSRYA----LIEFS 114
Query: 111 MTNA-SHIKEGL-SVLARYKRPLLVHAEMEKGSERHVKL 147
M I L +L P++ H E E + K
Sbjct: 115 MNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKR 153
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 31.7 bits (72), Expect = 0.52
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1 MPGLIDVHAHLDDPGRTE 18
MPGLI+ H HL G+
Sbjct: 70 MPGLINAHTHLFSQGKPL 87
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 31.4 bits (72), Expect = 0.56
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 28/83 (33%)
Query: 313 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 371
G+ L++ + PAK G G I G A+L V D D
Sbjct: 325 GIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTV--------FDRD---------- 366
Query: 372 SAYLGRRLSGKVLATISRGNLVY 394
V AT+ G
Sbjct: 367 ---------FNVKATVVNGQYEQ 380
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 30.7 bits (69), Expect = 0.90
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 315 TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 374
L + + A++ G I +G ADLVV + D
Sbjct: 335 DLGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQA----------- 383
Query: 375 LGRRLSGKVLATISRGNLVYKEG 397
K L I G ++ K+
Sbjct: 384 -------KRLCVIKNGRIIVKDE 399
Score = 29.9 bits (67), Expect = 1.5
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 1 MPGLIDVHAHLD-----DPGRTEWEGFPSGTKAAA 30
PG +D H H+D R T+ AA
Sbjct: 53 SPGFVDAHTHMDKSFTSTGERLPKFWSRPYTRDAA 87
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 30.7 bits (70), Expect = 0.90
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 20/71 (28%)
Query: 327 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386
A++ G + G A+ ++ + + E+ + T
Sbjct: 474 SAQVTLAEDLGKLERGFRAEYIILDRDPLKEMKGI--------------------ITITT 513
Query: 387 ISRGNLVYKEG 397
+ V K
Sbjct: 514 DPNSSSVDKLA 524
Score = 28.0 bits (63), Expect = 7.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1 MPGLIDVHAHLDDPGRT 17
MP D H HLD+ G +
Sbjct: 94 MPAFFDSHLHLDELGMS 110
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 28.3 bits (64), Expect = 0.99
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 MPGLIDVHAHL 11
+PGL D H H+
Sbjct: 60 IPGLNDSHIHV 70
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 30.7 bits (70), Expect = 1.0
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 43/131 (32%)
Query: 1 MPGLIDVHAHL-----------DDPGRTEW--------EGFPS-----------GTKAAA 30
+PGLI+ H HL + W G+ +A
Sbjct: 56 LPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVL 115
Query: 31 A----GGITTLIDMPLNSDPSTISTETLKLKVDAAEK--------RIYVDVGFWGGLVPE 78
GGITT+ D P + + ++AA R + +G G +
Sbjct: 116 LESLLGGITTVADQ-HLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCD 174
Query: 79 NAYNASALEAL 89
+ + +
Sbjct: 175 DLFVEPVDRVV 185
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 30.1 bits (68), Expect = 1.4
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 25/63 (39%)
Query: 1 MPGLIDVHAHLD-------------------DPGRTEWEGFPSGTKAAAA----GGITTL 37
P ++ H HLD GR + +A A G +
Sbjct: 92 APPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRG--VAAAQAGADTLTRLGAGGV 149
Query: 38 IDM 40
D+
Sbjct: 150 GDI 152
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 29.9 bits (68), Expect = 1.5
Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 28/68 (41%)
Query: 1 MPGLIDVHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----G 32
MPGL++ H H DD W E GT A A G
Sbjct: 72 MPGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRG 131
Query: 33 GITTLIDM 40
G T + +
Sbjct: 132 GTTCVNEN 139
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 29.8 bits (68), Expect = 1.6
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 28/68 (41%)
Query: 1 MPGLIDVHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----G 32
MPGLI++H H DD +W + G+ A G
Sbjct: 63 MPGLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRG 122
Query: 33 GITTLIDM 40
G TT+ DM
Sbjct: 123 GTTTINDM 130
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 29.8 bits (67), Expect = 1.8
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 221 VETCPHYLAFSAEEIPDGDTRFKCAPPIRD---AANKEKLWEALMDGHIDMLSSDHSPTV 277
+ L DG+ P+R A +KL + L + ++ H V
Sbjct: 79 DKVDGPKLRREFL-HEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKV 137
Query: 278 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 322
E +L FL G ++ + ++G YG A++
Sbjct: 138 HEDLMLPFDEFLALNGCEAARDLWINPFTAFG--YGHFDNVPAAY 180
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 8/85 (9%)
Query: 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 63
+ID H H+ P + G+ I + P T +K + +
Sbjct: 4 IIDGHTHVILPVEKHIKIM-------DEAGVDKTILFSTSIHPETAVN-LRDVKKEMKKL 55
Query: 64 RIYVDVGFWGGLVPENAYNASALEA 88
V+ +
Sbjct: 56 NDVVNGKTNSMIDVRRNSIKELTNV 80
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL,
hydrolase, glycosidase, lipoprotein, outer membrane,
multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Length = 48
Score = 26.7 bits (60), Expect = 2.0
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 306 WSYGRKYGVTLEQLASW 322
S +++GV ++ + W
Sbjct: 14 SSIAKRHGVNIKDVMRW 30
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 29.2 bits (66), Expect = 2.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 MPGLIDVHAHLDDP 14
ID+ A+L D
Sbjct: 25 AQQFIDIGANLTDD 38
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 337 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLVYK 395
G + G ADLV+W + +++ Y G V + G +V
Sbjct: 372 GQLKAGRSADLVIW--------QAPNYMYI------PYHYGVNH---VHQVMKNGTIVVN 414
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 29.0 bits (66), Expect = 2.7
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 4 LIDVHAHLDDPGRTEW-EGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDA 60
L+D H HLD + AAA + + ++T + D
Sbjct: 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCL---------AVATTLPSYLHMRDL 53
Query: 61 AEKR--IYVDVGFWGGLV-PENAYNASALEALLN 91
+R + G V P N + +E L
Sbjct: 54 VGERDNVVFSCG-----VHPLNQNDPYDVEDLRR 82
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 29.1 bits (66), Expect = 2.9
Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 28/68 (41%)
Query: 1 MPGLIDVHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----G 32
PGL++ H H DD W + GT+ A A G
Sbjct: 65 APGLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKG 124
Query: 33 GITTLIDM 40
GIT DM
Sbjct: 125 GITCFSDM 132
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 28.6 bits (65), Expect = 2.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 1 MPGLIDVHAHLDDP 14
+ ID H H D P
Sbjct: 2 ICRFIDTHCHFDFP 15
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 28.7 bits (65), Expect = 3.4
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 27/67 (40%)
Query: 1 MPGLIDVHAHL---------DDPGRTEW--------------EGFPSGTKAAAA----GG 33
MP L + H H +D EW + GT A G
Sbjct: 48 MPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHG 107
Query: 34 ITTLIDM 40
I +DM
Sbjct: 108 IAGFVDM 114
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 28.4 bits (63), Expect = 4.2
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 1 MPGLIDVHAHLD 12
+P ++ H HLD
Sbjct: 58 IPPFVEPHIHLD 69
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo
sapiens}
Length = 272
Score = 28.3 bits (64), Expect = 4.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 3 GLIDVHAHLDDP 14
GL+D H HL P
Sbjct: 5 GLVDCHCHLSAP 16
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 28.4 bits (64), Expect = 5.3
Identities = 17/68 (25%), Positives = 20/68 (29%), Gaps = 28/68 (41%)
Query: 1 MPGLIDVHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----G 32
MPG ++ H H DD W GT+ A A
Sbjct: 85 MPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQS 144
Query: 33 GITTLIDM 40
G TT DM
Sbjct: 145 GTTTFADM 152
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 5.8
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 250 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT--WS 307
+ KE + E +++ D P + ++ F G + +
Sbjct: 916 NPEKKEMIQEVIVEE-------DLEPFEASKETAEQ--FKHQHGDKVDIFEIPETGEYSV 966
Query: 308 YGRKYGVTLEQLASWWSERPAKLAGQVSKG 337
K G TL +AGQ+ G
Sbjct: 967 KLLK-GATL--YIPKALRFDRLVAGQIPTG 993
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo
sapiens}
Length = 301
Score = 28.0 bits (63), Expect = 6.2
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 4 LIDVHAHLDDP 14
ID+ +L DP
Sbjct: 3 FIDIGINLTDP 13
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 28.0 bits (63), Expect = 6.5
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 58 VDAAEKRI----YVDVGFWGGLVPENAYNASALEALLN-------AGV-LGLKSFMCPSG 105
VD EN +A + + G + +K + +G
Sbjct: 44 VDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAG 103
Query: 106 INDFPMTNASHIKEG 120
+ PM N S EG
Sbjct: 104 V---PMMNGSRTVEG 115
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667,
JCSG, PSI, protein structure initiative, joint center
for structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.1.9.12
Length = 268
Score = 27.9 bits (63), Expect = 6.7
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 61
++D HAHL + + + I ++ + E K +D +
Sbjct: 13 MVDTHAHLHFH--QFDDDRNAVISSFEENNIEFVV---------NVGVNLEDSKKSLDLS 61
Query: 62 EKR--IYVDVG 70
+ I+ VG
Sbjct: 62 KTSDRIFCSVG 72
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 27.8 bits (62), Expect = 7.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 1 MPGLIDVHAHLDDPG-RTEWEGFPSG 25
M G + + H P + GF G
Sbjct: 1 MQGKVALEEHFAIPETLQDSAGFVPG 26
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative;
2.20A {Staphylococcus aureus subsp}
Length = 265
Score = 27.5 bits (62), Expect = 8.2
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 61
LID H HL+D + A G+ + + T++ +
Sbjct: 2 LIDTHVHLNDEQ--YDDDLSEVITRAREAGVDRMF---------VVGFNKSTIERAMKLI 50
Query: 62 EKR--IYVDVG 70
++ +Y +G
Sbjct: 51 DEYDFLYGIIG 61
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 27.6 bits (61), Expect = 8.5
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 337 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393
G + G AD +W D + P + +G + A I +G V
Sbjct: 377 GTLEAGKSADFAIW--------DIERPAE-----LVYRIGFNP---LHARIFKGQKV 417
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 27.3 bits (61), Expect = 8.8
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 38
D H H + G +E GI +
Sbjct: 2 YFDSHLHSEGLGFSELV-------KLKENGIKEVC 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.401
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,526,423
Number of extensions: 403715
Number of successful extensions: 1042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 120
Length of query: 411
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 315
Effective length of database: 4,021,377
Effective search space: 1266733755
Effective search space used: 1266733755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.6 bits)