Query 015184
Match_columns 411
No_of_seqs 255 out of 1743
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.7E-56 5.9E-61 438.6 40.9 379 6-411 4-405 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.7E-52 3.7E-57 413.6 33.1 286 61-411 110-425 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 4.3E-52 9.3E-57 406.8 33.2 318 70-411 41-370 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 5E-50 1.1E-54 383.4 29.7 286 71-411 2-305 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 9.8E-50 2.1E-54 380.0 28.5 280 70-411 5-297 (317)
6 cd05477 gastricsin Gastricsins 100.0 2.7E-49 5.9E-54 377.2 30.3 283 73-411 1-297 (318)
7 cd05486 Cathespin_E Cathepsin 100.0 1E-49 2.2E-54 379.7 27.2 276 76-411 1-296 (316)
8 cd06098 phytepsin Phytepsin, a 100.0 2.4E-49 5.3E-54 377.0 29.0 272 70-411 5-297 (317)
9 cd05488 Proteinase_A_fungi Fun 100.0 1.4E-48 3E-53 372.4 29.5 281 70-411 5-300 (320)
10 cd05487 renin_like Renin stimu 100.0 1.4E-48 3E-53 373.4 29.0 284 70-411 3-305 (326)
11 cd05485 Cathepsin_D_like Cathe 100.0 1.8E-48 3.9E-53 372.7 28.9 286 70-411 6-309 (329)
12 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.9E-47 6.4E-52 364.0 28.9 279 74-411 2-302 (326)
13 cd05472 cnd41_like Chloroplast 100.0 5.8E-47 1.2E-51 358.2 29.5 266 75-411 1-276 (299)
14 PTZ00147 plasmepsin-1; Provisi 100.0 7.8E-47 1.7E-51 370.6 27.5 284 61-411 129-428 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.4E-46 5.3E-51 366.3 27.8 282 61-411 128-427 (450)
16 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-45 3.7E-50 354.5 31.3 304 82-411 2-340 (362)
17 cd05473 beta_secretase_like Be 100.0 8.2E-45 1.8E-49 352.4 28.4 289 74-411 2-324 (364)
18 cd05475 nucellin_like Nucellin 100.0 1.7E-43 3.7E-48 329.7 29.2 241 74-411 1-250 (273)
19 cd06097 Aspergillopepsin_like 100.0 4.9E-43 1.1E-47 327.9 25.1 237 76-367 1-251 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 1.3E-42 2.8E-47 322.6 26.1 230 75-411 1-242 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 8.2E-43 1.8E-47 332.9 17.6 278 75-410 1-295 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 1.8E-41 3.9E-46 320.4 23.7 245 75-411 2-274 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.1E-39 1.5E-43 300.7 25.8 241 76-367 1-256 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.9E-30 4E-35 222.4 14.1 162 76-261 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 3.2E-23 6.9E-28 165.9 11.5 108 78-223 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.7 3.7E-17 8.1E-22 140.0 12.0 130 278-410 1-140 (161)
27 cd05483 retropepsin_like_bacte 98.0 1.4E-05 3E-10 61.6 6.5 93 75-225 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.2 0.019 4.2E-07 46.3 7.1 31 72-104 8-38 (121)
29 PF13650 Asp_protease_2: Aspar 95.5 0.09 1.9E-06 39.4 7.7 26 78-105 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.3 0.32 6.9E-06 39.3 8.3 34 71-106 12-45 (124)
31 cd05484 retropepsin_like_LTR_2 92.9 0.12 2.6E-06 39.2 3.4 29 76-106 1-29 (91)
32 cd06095 RP_RTVL_H_like Retrope 91.5 0.99 2.1E-05 33.8 6.9 26 79-106 2-27 (86)
33 PF11925 DUF3443: Protein of u 90.8 2.2 4.7E-05 40.8 9.7 58 163-227 83-150 (370)
34 PF13975 gag-asp_proteas: gag- 89.8 0.57 1.2E-05 33.8 4.1 35 72-108 5-39 (72)
35 PF13650 Asp_protease_2: Aspar 88.7 0.69 1.5E-05 34.4 4.1 29 286-327 3-31 (90)
36 TIGR02281 clan_AA_DTGA clan AA 86.7 1.2 2.6E-05 35.8 4.6 36 276-327 9-44 (121)
37 PF13975 gag-asp_proteas: gag- 86.1 1.5 3.1E-05 31.6 4.3 30 285-327 12-41 (72)
38 cd05484 retropepsin_like_LTR_2 85.9 1.4 3E-05 33.2 4.4 31 285-328 4-34 (91)
39 cd05483 retropepsin_like_bacte 84.1 2.1 4.6E-05 32.1 4.7 30 285-327 6-35 (96)
40 PF00077 RVP: Retroviral aspar 83.9 1.5 3.3E-05 33.6 3.8 28 77-106 7-34 (100)
41 cd06095 RP_RTVL_H_like Retrope 83.5 1.7 3.6E-05 32.5 3.8 29 286-327 3-31 (86)
42 COG3577 Predicted aspartyl pro 79.4 5.3 0.00012 34.9 5.7 76 71-187 101-176 (215)
43 cd05479 RP_DDI RP_DDI; retrope 78.7 3.3 7.2E-05 33.3 4.2 29 286-327 21-49 (124)
44 COG3577 Predicted aspartyl pro 77.2 6.2 0.00013 34.5 5.5 36 276-327 103-138 (215)
45 cd05482 HIV_retropepsin_like R 73.8 4.5 9.7E-05 30.4 3.4 25 79-105 2-26 (87)
46 PF00077 RVP: Retroviral aspar 73.4 3.5 7.7E-05 31.5 2.9 27 285-324 9-35 (100)
47 PF09668 Asp_protease: Asparty 68.7 6.4 0.00014 31.7 3.4 31 284-327 27-57 (124)
48 cd05481 retropepsin_like_LTR_1 68.4 6.8 0.00015 29.8 3.4 22 307-328 12-33 (93)
49 TIGR03698 clan_AA_DTGF clan AA 60.8 6.8 0.00015 30.6 2.2 21 307-327 18-39 (107)
50 COG5550 Predicted aspartyl pro 60.4 6.5 0.00014 31.3 2.0 21 308-328 29-50 (125)
51 PF08194 DIM: DIM protein; In 59.6 12 0.00025 22.9 2.5 27 1-28 1-27 (36)
52 PF12384 Peptidase_A2B: Ty3 tr 56.9 15 0.00033 30.9 3.7 29 77-105 34-62 (177)
53 PF08284 RVP_2: Retroviral asp 55.0 29 0.00063 28.4 5.1 20 308-327 35-54 (135)
54 PF09668 Asp_protease: Asparty 48.6 32 0.00068 27.8 4.2 38 72-111 21-58 (124)
55 cd05470 pepsin_retropepsin_lik 43.0 23 0.00049 27.3 2.6 18 307-324 13-30 (109)
56 PF12384 Peptidase_A2B: Ty3 tr 41.5 62 0.0014 27.4 4.9 22 307-328 47-68 (177)
57 TIGR03698 clan_AA_DTGF clan AA 38.8 40 0.00086 26.3 3.4 26 78-103 2-32 (107)
58 PF15240 Pro-rich: Proline-ric 32.6 23 0.00051 30.3 1.2 15 5-19 2-16 (179)
59 cd05480 NRIP_C NRIP_C; putativ 32.2 59 0.0013 25.1 3.2 20 308-327 12-31 (103)
60 cd00303 retropepsin_like Retro 30.0 87 0.0019 21.6 3.9 21 307-327 11-31 (92)
61 cd06097 Aspergillopepsin_like 27.2 57 0.0012 30.0 3.0 17 307-323 15-31 (278)
62 cd05475 nucellin_like Nucellin 24.2 1E+02 0.0022 28.4 4.0 32 74-105 157-194 (273)
63 cd06096 Plasmepsin_5 Plasmepsi 21.2 1.1E+02 0.0025 28.9 3.8 17 307-323 18-34 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.7e-56 Score=438.62 Aligned_cols=379 Identities=28% Similarity=0.463 Sum_probs=289.6
Q ss_pred hhhhhhHHhhhhhccccCCcceEEEEEEecCC------Cc----ccHHHHHHHHHHHHHHHhh--ccCcCCCCCCCCCCc
Q 015184 6 RNCLCIVLIATAAVGGVSSNHGVFSVKYRYAG------RE----RSLSLLKEHDARRQQRILA--GVDLPLGGSSRPDGV 73 (411)
Q Consensus 6 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~r~~~~~~--~~~~pl~~~~~~~~~ 73 (411)
++.+|++.+.......+.....+++|.||.++ +. ..+.+..+|+++|.+++.+ ....|+.. +....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~ 82 (431)
T PLN03146 4 LLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNG 82 (431)
T ss_pred hHHHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCC
Confidence 44555555555556666667899999998763 11 1233445556666655532 12234432 223467
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCC
Q 015184 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (411)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (411)
++|+++|.||||||++.|+|||||+++||+|.+|..|..+.. +.|||++|+||+.++|.++.|..... ...|.
T Consensus 83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~-----~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~ 155 (431)
T PLN03146 83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVS-----PLFDPKKSSTYKDVSCDSSQCQALGN--QASCS 155 (431)
T ss_pred ccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCC-----CcccCCCCCCCcccCCCCcccccCCC--CCCCC
Confidence 899999999999999999999999999999999999987643 79999999999999999999976553 23476
Q ss_pred CCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcHHHH
Q 015184 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQ 233 (411)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~ 233 (411)
.++.|.|.+.|+||+.+.|.+++|+|+|++.... ...++++.|||+....+.|. ...+||||||+...|++.|
T Consensus 156 ~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sq 228 (431)
T PLN03146 156 DENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQ 228 (431)
T ss_pred CCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHH
Confidence 5667999999999998899999999999875322 13478999999998776552 2579999999999999999
Q ss_pred hhhcCCCCCceEEeecCC----CCCceeeeCCcCC---CCceeecCcCC--CCceEEEEEEEEECCEEeecCCccccccC
Q 015184 234 LASSGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGD 304 (411)
Q Consensus 234 l~~~g~i~~~Fs~~l~~~----~~~G~l~fGg~d~---~~~~~~p~~~~--~~~w~v~l~~i~v~g~~~~~~~~~~~~~~ 304 (411)
|..+ ++++||+||.+. ...|.|+||+..+ ..+.|+|++.+ +.+|.|.|++|+||++.+.++...+....
T Consensus 229 l~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~ 306 (431)
T PLN03146 229 LGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVE 306 (431)
T ss_pred hhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCC
Confidence 9763 456999999642 2478999999642 34889999743 36899999999999999887766554334
Q ss_pred CCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccc-cCCCCceeeecCCccccCceEEEEEcCCcEEEECCCeeeEE
Q 015184 305 NKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT-VHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFP 383 (411)
Q Consensus 305 ~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~yi~~ 383 (411)
...+||||||++++||+++|++|.+++...+....... ......||..... ..+|+|+|+| +|+++.||+++|+++
T Consensus 307 ~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~ 383 (431)
T PLN03146 307 EGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVK 383 (431)
T ss_pred CCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEE
Confidence 56799999999999999999999999887764221111 1123589874322 4689999999 789999999999998
Q ss_pred c-CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 384 F-EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 384 ~-~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
. ++..|+++.... +.|||||+
T Consensus 384 ~~~~~~Cl~~~~~~-------~~~IlG~~ 405 (431)
T PLN03146 384 VSEDLVCFAMIPTS-------SIAIFGNL 405 (431)
T ss_pred cCCCcEEEEEecCC-------CceEECee
Confidence 7 567899887542 46999984
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.7e-52 Score=413.55 Aligned_cols=286 Identities=22% Similarity=0.382 Sum_probs=233.2
Q ss_pred CcCCCCCCCCCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCC--CCCcCCCCCcCccCCCCCCCCCceecCCC
Q 015184 61 DLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQ 138 (411)
Q Consensus 61 ~~pl~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~--C~~~~~~~~~~~~y~~~~Sst~~~~~c~~ 138 (411)
..||. ++.+.+|+++|+||||||+|+|+|||||+++||++..|.. |.. ++.||+++|+||+.+.+..
T Consensus 110 ~~~l~----n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~-------~~~yd~s~SSTy~~~~~~~ 178 (482)
T PTZ00165 110 QQDLL----NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAP-------HRKFDPKKSSTYTKLKLGD 178 (482)
T ss_pred ceecc----cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccc-------cCCCCccccCCcEecCCCC
Confidence 45565 7899999999999999999999999999999999999863 543 4799999999999843111
Q ss_pred cccCCCCCCCCCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccc
Q 015184 139 EFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALD 218 (411)
Q Consensus 139 ~~C~~~~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~d 218 (411)
....+.+.|++|+. .|.+++|+|++++.. ++++.||+++..++..+ ...++|
T Consensus 179 -----------------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~f--~~~~~D 230 (482)
T PTZ00165 179 -----------------ESAETYIQYGTGEC-VLALGKDTVKIGGLK--------VKHQSIGLAIEESLHPF--ADLPFD 230 (482)
T ss_pred -----------------ccceEEEEeCCCcE-EEEEEEEEEEECCEE--------EccEEEEEEEecccccc--cccccc
Confidence 11257799999987 899999999998854 67899999998754322 456789
Q ss_pred eeeecCCCC---------CcHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC------CCceeecCcCCCCceEE
Q 015184 219 GIIGFGKSN---------SSMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ------PEVNKTPLVPNQPHYSI 281 (411)
Q Consensus 219 GIlGLg~~~---------~s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~------~~~~~~p~~~~~~~w~v 281 (411)
||||||++. .+++++|++||+|+ ++||+||.+. ..+|+|+|||+|+ +++.|+|+. ...+|.|
T Consensus 231 GILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i 309 (482)
T PTZ00165 231 GLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEI 309 (482)
T ss_pred ceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEE
Confidence 999999875 36899999999996 9999999864 4579999999985 468999996 5789999
Q ss_pred EEEEEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCc
Q 015184 282 NMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFP 361 (411)
Q Consensus 282 ~l~~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P 361 (411)
.+++|+|+++.+... ...+.||+||||+++++|++++++|.++++.. .+| +..+.+|
T Consensus 310 ~l~~i~vgg~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------~~C-----~~~~~lP 366 (482)
T PTZ00165 310 EVVDILIDGKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE------------EDC-----SNKDSLP 366 (482)
T ss_pred EeCeEEECCEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc------------ccc-----cccccCC
Confidence 999999999877542 23567999999999999999999999988532 267 4445699
Q ss_pred eEEEEEcCCc-----EEEECCCeeeEEc-----CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 362 NVTFHFENSV-----SLKVYPHEYLFPF-----EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 362 ~i~f~f~gg~-----~~~l~~~~yi~~~-----~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
+|+|+| +|. +|+|+|++|+++. ++..|+ +|++.+..... .+.|||||+
T Consensus 367 ~itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~-g~~~ILGd~ 425 (482)
T PTZ00165 367 RISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPR-GPLFVLGNN 425 (482)
T ss_pred ceEEEE-CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCC-CceEEEchh
Confidence 999999 654 8999999999973 456896 99887654432 368999995
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-52 Score=406.82 Aligned_cols=318 Identities=35% Similarity=0.625 Sum_probs=259.9
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCC-CCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP 148 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~-~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~ 148 (411)
...+++|+++|.||||||+|.|+|||||+++||+|..|. .|..+.. +.|||++|+|++.++|+++.|......
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~~- 114 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQS- 114 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCccccccccC-
Confidence 667889999999999999999999999999999999999 7987532 459999999999999999999998754
Q ss_pred CCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC
Q 015184 149 LTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS 228 (411)
Q Consensus 149 ~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~ 228 (411)
|..++.|.|.+.|++|+.++|++++|+|+|++.. ...++++.|||+..+.+.+.. . .+.+||||||+...
T Consensus 115 ---~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~~~~-~-~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 115 ---CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGSFGL-F-AAFDGILGLGRGSL 184 (398)
T ss_pred ---cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCcccccc-c-cccceEeecCCCCc
Confidence 8888999999999997777999999999999853 123668999999998765211 2 67899999999999
Q ss_pred cHHHHhhhcCCCCCceEEeecCCC----CCceeeeCCcCC----CCceeecCcCCCC-ceEEEEEEEEECCEEeecCCcc
Q 015184 229 SMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQ----PEVNKTPLVPNQP-HYSINMTAVQVGLDFLNLPTDV 299 (411)
Q Consensus 229 s~~~~l~~~g~i~~~Fs~~l~~~~----~~G~l~fGg~d~----~~~~~~p~~~~~~-~w~v~l~~i~v~g~~~~~~~~~ 299 (411)
+++.|+...+...++||+||.+.. .+|.|+||++|+ +.+.|+|++.+.. +|.+.+.+|+|+++. .++...
T Consensus 185 S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~ 263 (398)
T KOG1339|consen 185 SVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSL 263 (398)
T ss_pred cceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcce
Confidence 999999987777678999999862 479999999997 4578999975544 999999999999977 555555
Q ss_pred ccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECCCe
Q 015184 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (411)
Q Consensus 300 ~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 379 (411)
+..+ ..++|+||||++++||.++|++|.+++++.... ......+...|+...... ..+|+|+|+|.+|+.|.+++++
T Consensus 264 ~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~ 340 (398)
T KOG1339|consen 264 FCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKN 340 (398)
T ss_pred EecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccc
Confidence 5332 688999999999999999999999999987410 111222346898655443 4599999999548999999999
Q ss_pred eeEEcCC-EE-EEEEEeCCCCCCCCCCeeeecCC
Q 015184 380 YLFPFED-LW-CIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 380 yi~~~~~-~~-C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
|+++... .. |+++...... .+.|||||+
T Consensus 341 y~~~~~~~~~~Cl~~~~~~~~----~~~~ilG~~ 370 (398)
T KOG1339|consen 341 YLVEVSDGGGVCLAFFNGMDS----GPLWILGDV 370 (398)
T ss_pred eEEEECCCCCceeeEEecCCC----CceEEEchH
Confidence 9998732 23 9966554311 158999985
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5e-50 Score=383.44 Aligned_cols=286 Identities=23% Similarity=0.362 Sum_probs=228.7
Q ss_pred CCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCC
Q 015184 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (411)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (411)
+.+.+|+++|+||||+|++.|+|||||+++||+|..|..|. ..|..++.|||++|+|++..
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~~---------------- 62 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVKN---------------- 62 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceeeC----------------
Confidence 45789999999999999999999999999999998886431 12334579999999999872
Q ss_pred CCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC--
Q 015184 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (411)
Q Consensus 151 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~-- 228 (411)
.+.|.+.|++|+. .|.+++|+|+|++.. ++++.||+++...+..+ .....+||||||++..
T Consensus 63 ------~~~~~i~Yg~G~~-~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 125 (325)
T cd05490 63 ------GTEFAIQYGSGSL-SGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGITF--IAAKFDGILGMAYPRISV 125 (325)
T ss_pred ------CcEEEEEECCcEE-EEEEeeeEEEECCEE--------EcCEEEEEEeeccCCcc--cceeeeEEEecCCccccc
Confidence 3789999999985 999999999998754 66899999988765321 3346799999998653
Q ss_pred ----cHHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecC
Q 015184 229 ----SMISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (411)
Q Consensus 229 ----s~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~ 296 (411)
+++++|++||.|+ ++||+||.+. ..+|+|+||++|+ +++.|+|+. ...+|.|++++|+|+++...
T Consensus 126 ~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~-- 202 (325)
T cd05490 126 DGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTL-- 202 (325)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeee--
Confidence 5889999999996 9999999864 2469999999996 678999985 56899999999999876432
Q ss_pred CccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEEC
Q 015184 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (411)
Q Consensus 297 ~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~ 376 (411)
......+||||||+++++|.+++++|.+++++... ....+.++| +....+|+|+|+| +|++|+|+
T Consensus 203 -----~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~----~~~~~~~~C-----~~~~~~P~i~f~f-gg~~~~l~ 267 (325)
T cd05490 203 -----CKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPL----IQGEYMIDC-----EKIPTLPVISFSL-GGKVYPLT 267 (325)
T ss_pred -----cCCCCEEEECCCCccccCCHHHHHHHHHHhCCccc----cCCCEEecc-----cccccCCCEEEEE-CCEEEEEC
Confidence 12345799999999999999999999998864311 112223456 5555689999999 89999999
Q ss_pred CCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 377 PHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 377 ~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
|++|+++. ....|+ +|+..+.... +.+.|||||+
T Consensus 268 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ilGd~ 305 (325)
T cd05490 268 GEDYILKVSQRGTTICLSGFMGLDIPPP-AGPLWILGDV 305 (325)
T ss_pred hHHeEEeccCCCCCEEeeEEEECCCCCC-CCceEEEChH
Confidence 99999975 346897 7877554332 2368999985
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.8e-50 Score=379.98 Aligned_cols=280 Identities=27% Similarity=0.428 Sum_probs=229.7
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (411)
++.+..|+++|+||||+|++.|+|||||+++||+|..|..|. |..++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceeeCC--------------
Confidence 677899999999999999999999999999999998886421 2234799999999998743
Q ss_pred CCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC-
Q 015184 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (411)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~- 228 (411)
+.|.+.|++|+. .|.+++|+|+|++.. ++++.|||+....+.+. .....+||||||++..
T Consensus 66 --------~~~~~~yg~gs~-~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s 126 (317)
T cd05478 66 --------QPLSIQYGTGSM-TGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFF--YYAPFDGILGLAYPSIA 126 (317)
T ss_pred --------cEEEEEECCceE-EEEEeeeEEEECCEE--------ECCEEEEEEEecCcccc--ccccccceeeeccchhc
Confidence 789999999985 999999999998754 56899999987765442 2345799999998643
Q ss_pred -----cHHHHhhhcCCCC-CceEEeecCCC-CCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecCC
Q 015184 229 -----SMISQLASSGGVR-KMFAHCLDGIN-GGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (411)
Q Consensus 229 -----s~~~~l~~~g~i~-~~Fs~~l~~~~-~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~~ 297 (411)
+++++|++||+|+ ++||+||.+.. .+|.|+|||+|+ ++++|+|+. .+.+|.|.+++|+||++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC-
Confidence 5899999999996 99999999852 468999999985 678999995 5789999999999999987532
Q ss_pred ccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECC
Q 015184 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (411)
Q Consensus 298 ~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~ 377 (411)
.+..++|||||+++++|++++++|.+++++.... ...+.++| +....+|+|+|+| +|++|+||+
T Consensus 205 ------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~C-----~~~~~~P~~~f~f-~g~~~~i~~ 268 (317)
T cd05478 205 ------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQ----NGEMVVNC-----SSISSMPDVVFTI-NGVQYPLPP 268 (317)
T ss_pred ------CCCEEEECCCchhhhCCHHHHHHHHHHhCCcccc----CCcEEeCC-----cCcccCCcEEEEE-CCEEEEECH
Confidence 2457999999999999999999999988654321 11122355 5555799999999 899999999
Q ss_pred CeeeEEcCCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 378 ~~yi~~~~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
++|+.+. ...|+ +|+..+. .+.||||++
T Consensus 269 ~~y~~~~-~~~C~~~~~~~~~-----~~~~IlG~~ 297 (317)
T cd05478 269 SAYILQD-QGSCTSGFQSMGL-----GELWILGDV 297 (317)
T ss_pred HHheecC-CCEEeEEEEeCCC-----CCeEEechH
Confidence 9999875 67897 6766431 357999984
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.7e-49 Score=377.25 Aligned_cols=283 Identities=25% Similarity=0.423 Sum_probs=229.5
Q ss_pred cccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCC
Q 015184 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (411)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (411)
|..|+++|+||||||++.|+|||||+++||+|..|..| .|..++.|||++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~-----~C~~~~~f~~~~SsT~~~~------------------ 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQ-----ACTNHTKFNPSQSSTYSTN------------------ 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCc-----cccccCCCCcccCCCceEC------------------
Confidence 46799999999999999999999999999999988631 1333479999999999873
Q ss_pred CCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCC-----
Q 015184 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN----- 227 (411)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~----- 227 (411)
.|.|.+.|++|+. .|.+++|+|++++.. ++++.|||+....+... .....+||||||++.
T Consensus 58 ----~~~~~~~Yg~Gs~-~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~~ 122 (318)
T cd05477 58 ----GETFSLQYGSGSL-TGIFGYDTVTVQGII--------ITNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISAGG 122 (318)
T ss_pred ----CcEEEEEECCcEE-EEEEEeeEEEECCEE--------EcCEEEEEEEecccccc--cccceeeEeecCcccccccC
Confidence 4789999999986 999999999998753 66899999998654321 234579999999853
Q ss_pred -CcHHHHhhhcCCCC-CceEEeecCC--CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecCCcc
Q 015184 228 -SSMISQLASSGGVR-KMFAHCLDGI--NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (411)
Q Consensus 228 -~s~~~~l~~~g~i~-~~Fs~~l~~~--~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~~~~ 299 (411)
.+++++|+++|.|+ ++||+||.+. ...|.|+||++|+ +++.|+|+. ...+|.|.+++|+|+++.+...
T Consensus 123 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~--- 198 (318)
T cd05477 123 ATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWC--- 198 (318)
T ss_pred CCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEeccc---
Confidence 47999999999996 9999999874 2469999999996 568999995 5689999999999999886432
Q ss_pred ccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECCCe
Q 015184 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (411)
Q Consensus 300 ~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 379 (411)
..+..+||||||+++++|++++++|++++++..... .+|..+|+....+|+|+|+| +|+++.||+++
T Consensus 199 ---~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~---------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~ 265 (318)
T cd05477 199 ---SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQY---------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSA 265 (318)
T ss_pred ---CCCceeeECCCCccEECCHHHHHHHHHHhCCccccC---------CCEEEeCCccccCCcEEEEE-CCEEEEECHHH
Confidence 224569999999999999999999999997654321 23444446556799999999 89999999999
Q ss_pred eeEEcCCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 380 YLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 380 yi~~~~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
|+.+. ...|+ +|++.......+.+.||||++
T Consensus 266 y~~~~-~~~C~~~i~~~~~~~~~~~~~~ilG~~ 297 (318)
T cd05477 266 YILQN-NGYCTVGIEPTYLPSQNGQPLWILGDV 297 (318)
T ss_pred eEecC-CCeEEEEEEecccCCCCCCceEEEcHH
Confidence 99985 56896 887654433334467999974
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1e-49 Score=379.74 Aligned_cols=276 Identities=26% Similarity=0.422 Sum_probs=224.8
Q ss_pred EEEEEEeCCCCceEEEEEECCCCceeEeCCCCC--CCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCC
Q 015184 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (411)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (411)
|+++|+||||+|+++|+|||||+++||++..|. .|.. ++.|||++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~~------------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVSN------------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCcccccC-------------------
Confidence 899999999999999999999999999999886 4654 378999999999873
Q ss_pred CCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC-----
Q 015184 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (411)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~----- 228 (411)
.+.|.+.|++|+. .|.+++|+|+|++.. ++++.||++....+..+ ....++||||||++..
T Consensus 55 ---~~~~~i~Yg~g~~-~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 55 ---GEAFSIQYGTGSL-TGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ---CcEEEEEeCCcEE-EEEeeecEEEECCEE--------EcCEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 4789999999985 999999999998753 66899999887654322 3456899999998754
Q ss_pred -cHHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecCCcc
Q 015184 229 -SMISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (411)
Q Consensus 229 -s~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~~~~ 299 (411)
+++++|++||+|+ ++||+||.+. ..+|.|+|||+|+ +++.|+|+. +..+|.|.+++|+|+++.+..
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~---- 195 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFC---- 195 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEec----
Confidence 4789999999996 8999999864 2479999999996 579999995 678999999999999987642
Q ss_pred ccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECCCe
Q 015184 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (411)
Q Consensus 300 ~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~ 379 (411)
.....++|||||+++++|++++++|.+.+++... ...+.++| +....+|+|+|+| +|++++|+|++
T Consensus 196 ---~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~C-----~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 196 ---SDGCQAIVDTGTSLITGPSGDIKQLQNYIGATAT-----DGEYGVDC-----STLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ---CCCCEEEECCCcchhhcCHHHHHHHHHHhCCccc-----CCcEEEec-----cccccCCCEEEEE-CCEEEEeCHHH
Confidence 2245799999999999999999999888854321 11122455 5556799999999 89999999999
Q ss_pred eeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 380 YLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 380 yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
|++.. .+..|+ +|+..+..+.. .+.|||||+
T Consensus 262 y~~~~~~~~~~~C~~~~~~~~~~~~~-~~~~ILGd~ 296 (316)
T cd05486 262 YTLEDQSDGGGYCSSGFQGLDIPPPA-GPLWILGDV 296 (316)
T ss_pred eEEecccCCCCEEeeEEEECCCCCCC-CCeEEEchH
Confidence 99975 356897 78776543322 358999984
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.4e-49 Score=376.96 Aligned_cols=272 Identities=26% Similarity=0.422 Sum_probs=223.2
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCC---CCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~---~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~ 146 (411)
++.+..|+++|+||||+|+++|+|||||+++||+|..|. .|.. ++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~------------ 65 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-------HSKYKSSKSSTYKKN------------ 65 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-------cCcCCcccCCCcccC------------
Confidence 778899999999999999999999999999999999885 5654 378999999999873
Q ss_pred CCCCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCC
Q 015184 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (411)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~ 226 (411)
...+.+.|++|+. .|.+++|+|+|++.. ++++.||+++....... ....++||||||++
T Consensus 66 ----------~~~~~i~Yg~G~~-~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 66 ----------GTSASIQYGTGSI-SGFFSQDSVTVGDLV--------VKNQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred ----------CCEEEEEcCCceE-EEEEEeeEEEECCEE--------ECCEEEEEEEecCCccc--cccccceecccccc
Confidence 3688999999986 999999999998753 66899999987654221 34568999999986
Q ss_pred CC------cHHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEE
Q 015184 227 NS------SMISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (411)
Q Consensus 227 ~~------s~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~ 292 (411)
.. +++.+|++||+|+ ++||+||.+. ..+|.|+||++|+ ++++|+|+. ...+|.|.+++|+|+++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 53 5788999999996 8999999864 2479999999996 578999996 568999999999999988
Q ss_pred eecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcE
Q 015184 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (411)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 372 (411)
+.... ....++|||||+++++|++++++|. +.++|+ ....+|+|+|+| +|++
T Consensus 204 ~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~C~-----~~~~~P~i~f~f-~g~~ 255 (317)
T cd06098 204 TGFCA------GGCAAIADSGTSLLAGPTTIVTQIN----------------SAVDCN-----SLSSMPNVSFTI-GGKT 255 (317)
T ss_pred eeecC------CCcEEEEecCCcceeCCHHHHHhhh----------------ccCCcc-----ccccCCcEEEEE-CCEE
Confidence 65432 2456999999999999998877663 125784 334689999999 8999
Q ss_pred EEECCCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 373 LKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 373 ~~l~~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
|+|+|++|+++. ....|+ +|+..+..... .+.|||||+
T Consensus 256 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~-~~~~IlGd~ 297 (317)
T cd06098 256 FELTPEQYILKVGEGAAAQCISGFTALDVPPPR-GPLWILGDV 297 (317)
T ss_pred EEEChHHeEEeecCCCCCEEeceEEECCCCCCC-CCeEEechH
Confidence 999999999875 245897 78776543322 358999984
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.4e-48 Score=372.42 Aligned_cols=281 Identities=24% Similarity=0.417 Sum_probs=228.3
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCC--CCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~ 147 (411)
++.+..|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|++++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~-------------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKA-------------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceee--------------
Confidence 667889999999999999999999999999999999986 4653 36899999999986
Q ss_pred CCCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCC
Q 015184 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (411)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~ 227 (411)
+.|.+.+.|++|++ .|.+++|++++++.. ++++.|||++...+... .....+||||||++.
T Consensus 64 --------~~~~~~~~y~~g~~-~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 64 --------NGTEFKIQYGSGSL-EGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred --------CCCEEEEEECCceE-EEEEEEeEEEECCEE--------ECCEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 34789999999985 999999999998754 56899999987654321 234679999999976
Q ss_pred C------cHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeec
Q 015184 228 S------SMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (411)
Q Consensus 228 ~------s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~ 295 (411)
. +.+.+|++||+|+ ++||+||.+. ...|.|+||++|+ +++.|+|++ ...+|.|.+++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 4567899999995 9999999975 4579999999986 679999996 568999999999999987643
Q ss_pred CCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEE
Q 015184 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (411)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 375 (411)
. +..++|||||+++++|++++++|.+++++.... . .+|..+|+....+|+|+|+| +|+++.|
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~----~-----~~~~~~C~~~~~~P~i~f~f-~g~~~~i 265 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSW----N-----GQYTVDCSKVDSLPDLTFNF-DGYNFTL 265 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCcccc----C-----CcEEeeccccccCCCEEEEE-CCEEEEE
Confidence 2 346999999999999999999999988644321 1 23334445556799999999 8999999
Q ss_pred CCCeeeEEcCCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 376 YPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 376 ~~~~yi~~~~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
||++|+++. .+.|+ .+...+..... .+.||||++
T Consensus 266 ~~~~y~~~~-~g~C~~~~~~~~~~~~~-~~~~ilG~~ 300 (320)
T cd05488 266 GPFDYTLEV-SGSCISAFTGMDFPEPV-GPLAIVGDA 300 (320)
T ss_pred CHHHheecC-CCeEEEEEEECcCCCCC-CCeEEEchH
Confidence 999999874 45797 67665433222 258999984
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.4e-48 Score=373.39 Aligned_cols=284 Identities=22% Similarity=0.385 Sum_probs=229.7
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (411)
++.+..|+++|+||||+|+++|+|||||+++||++..|..|.. .|..++.|||++|+|++..
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~~--------------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKEN--------------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeEC---------------
Confidence 5678999999999999999999999999999999988865421 2444579999999999873
Q ss_pred CCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccC-CCCCCCccccceeeecCCCCC
Q 015184 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (411)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~-~~~~~~~~~~dGIlGLg~~~~ 228 (411)
.|.|.+.|++|++ .|.+++|+|++++.. + ++.||++..... .+ .....|||||||++..
T Consensus 65 -------~~~~~~~Yg~g~~-~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~---~~~~~dGilGLg~~~~ 124 (326)
T cd05487 65 -------GTEFTIHYASGTV-KGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPF---MLAKFDGVLGMGYPKQ 124 (326)
T ss_pred -------CEEEEEEeCCceE-EEEEeeeEEEECCEE--------e-eEEEEEEEeccCCcc---ceeecceEEecCChhh
Confidence 4789999999985 999999999998753 2 367999887542 22 2346899999998653
Q ss_pred ------cHHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEee
Q 015184 229 ------SMISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (411)
Q Consensus 229 ------s~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~ 294 (411)
+++++|++||+|+ ++||+||.+. ...|.|+||++|+ ++++|+|+. ...+|.|.+++++|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 6889999999996 9999999874 3479999999996 668899985 57899999999999998764
Q ss_pred cCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEE
Q 015184 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLK 374 (411)
Q Consensus 295 ~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~ 374 (411)
.. .+..++|||||+++++|++++++|++++++... ...+.++| +....+|+|+|+| +|++++
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~~C-----~~~~~~P~i~f~f-gg~~~~ 265 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKER-----LGDYVVKC-----NEVPTLPDISFHL-GGKEYT 265 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCccc-----CCCEEEec-----cccCCCCCEEEEE-CCEEEE
Confidence 22 245699999999999999999999999865432 11122455 5556789999999 899999
Q ss_pred ECCCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 375 VYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 375 l~~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
||+++|+++. .+..|+ +|+..+..+..+ +.||||++
T Consensus 266 v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~~~ilG~~ 305 (326)
T cd05487 266 LSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTG-PLWVLGAT 305 (326)
T ss_pred eCHHHhEEeccCCCCCEEEEEEEeCCCCCCCC-CeEEEehH
Confidence 9999999986 357896 888765433332 58999984
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.8e-48 Score=372.70 Aligned_cols=286 Identities=24% Similarity=0.350 Sum_probs=230.6
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCC
Q 015184 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (411)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (411)
++.+..|+++|+||||+|++.|+|||||+++||+|..|..|. ..|..++.|||++|+|++..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~Sst~~~~--------------- 67 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN---IACLLHNKYDSTKSSTYKKN--------------- 67 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC---ccccCCCeECCcCCCCeEEC---------------
Confidence 778899999999999999999999999999999998886432 12334578999999999873
Q ss_pred CCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC-
Q 015184 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (411)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~- 228 (411)
.+.|.+.|++|++ .|.+++|+++|++.. ++++.||++....+... .....+||||||+...
T Consensus 68 -------~~~~~i~Y~~g~~-~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s 129 (329)
T cd05485 68 -------GTEFAIQYGSGSL-SGFLSTDTVSVGGVS--------VKGQTFAEAINEPGLTF--VAAKFDGILGMGYSSIS 129 (329)
T ss_pred -------CeEEEEEECCceE-EEEEecCcEEECCEE--------ECCEEEEEEEecCCccc--cccccceEEEcCCcccc
Confidence 3789999999985 999999999998754 56899999987654221 3456899999999764
Q ss_pred -----cHHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeec
Q 015184 229 -----SMISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (411)
Q Consensus 229 -----s~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~ 295 (411)
+++.+|++||+|+ ++||+||.+. ..+|+|+||++|+ +++.|+|+. .+.+|.|.+++++++++.+.
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~- 207 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC- 207 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec-
Confidence 4689999999996 9999999864 2469999999985 578999995 57899999999999988652
Q ss_pred CCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEE
Q 015184 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (411)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l 375 (411)
..+..+||||||+++++|++++++|.+++++... .. .||..+|+...++|+|+|+| ||+++.|
T Consensus 208 -------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~~-----~~~~~~C~~~~~~p~i~f~f-gg~~~~i 270 (329)
T cd05485 208 -------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI----IG-----GEYMVNCSAIPSLPDITFVL-GGKSFSL 270 (329)
T ss_pred -------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCccc----cC-----CcEEEeccccccCCcEEEEE-CCEEeEE
Confidence 2245699999999999999999999998865321 11 23344445556689999999 8999999
Q ss_pred CCCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 376 YPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 376 ~~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
|+++|+++. +...|+ +|+..+..+. ..+.|||||+
T Consensus 271 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~IlG~~ 309 (329)
T cd05485 271 TGKDYVLKVTQMGQTICLSGFMGIDIPPP-AGPLWILGDV 309 (329)
T ss_pred ChHHeEEEecCCCCCEEeeeEEECcCCCC-CCCeEEEchH
Confidence 999999986 346897 7886554332 2357999984
No 12
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.9e-47 Score=364.03 Aligned_cols=279 Identities=28% Similarity=0.531 Sum_probs=223.0
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCC
Q 015184 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (411)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (411)
++|+++|+||||+|++.|+|||||+++||+|..|..|..+. ++.|||++|+|++.+.|.+..|.. ...|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcCC
Confidence 57999999999999999999999999999999999997653 378999999999999999999953 23453
Q ss_pred CCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC----c
Q 015184 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (411)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~----s 229 (411)
++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+....+.+ .....+||||||+... +
T Consensus 72 -~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 -NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLF---LTQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcc---cccccceEEEccCCcccccCc
Confidence 4679999999999877999999999998764321 00112357899999877655 3456899999999764 3
Q ss_pred HHHHhhhcCCC-C--CceEEeecCCCCCceeeeCCcCC--------------CCceeecCcCCCCceEEEEEEEEECCEE
Q 015184 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQ--------------PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (411)
Q Consensus 230 ~~~~l~~~g~i-~--~~Fs~~l~~~~~~G~l~fGg~d~--------------~~~~~~p~~~~~~~w~v~l~~i~v~g~~ 292 (411)
...+|.+++.+ . ++||+||++ .+|.|+||++|+ +++.|+|+. .+.+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccc
Confidence 44456666665 2 899999986 479999999985 467899996 458999999999999876
Q ss_pred eecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcE
Q 015184 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (411)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 372 (411)
.... ......++|||||++++||++++++|.+++ |+|+|+|.+|++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~~ 269 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNLK 269 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCcE
Confidence 1110 123567999999999999999999998766 889999944899
Q ss_pred EEECCCeeeEEcCCEEE-EEEEeCCCCCCCCCCeeeecCC
Q 015184 373 LKVYPHEYLFPFEDLWC-IGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 373 ~~l~~~~yi~~~~~~~C-~~~~~~~~~~~~~~~~~ILGdv 411 (411)
++++|++|+++..+..| +++...+ +.|||||+
T Consensus 270 ~~i~p~~y~~~~~~~~c~~~~~~~~-------~~~ILG~~ 302 (326)
T cd06096 270 IDWKPSSYLYKKESFWCKGGEKSVS-------NKPILGAS 302 (326)
T ss_pred EEECHHHhccccCCceEEEEEecCC-------CceEEChH
Confidence 99999999998744445 4654332 57999985
No 13
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.8e-47 Score=358.23 Aligned_cols=266 Identities=29% Similarity=0.563 Sum_probs=215.0
Q ss_pred cEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCC
Q 015184 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (411)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (411)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999987543
Q ss_pred CCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcHHHHh
Q 015184 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (411)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~l 234 (411)
|.|.+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||+...+++.|+
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 2689999999987999999999998741 26689999999876544 25899999999999999998
Q ss_pred hhcCCCCCceEEeecCC--CCCceeeeCCcCC--CCceeecCcCCC---CceEEEEEEEEECCEEeecCCccccccCCCc
Q 015184 235 ASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNKG 307 (411)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~--~~~G~l~fGg~d~--~~~~~~p~~~~~---~~w~v~l~~i~v~g~~~~~~~~~~~~~~~~~ 307 (411)
..+ .+++||+||.+. ..+|+|+||++|+ +++.|+|++.++ .+|.|++++|+|+++.+..+... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 458999999864 3579999999997 789999997653 68999999999999987654321 23567
Q ss_pred EEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCC-ceeeecCCccccCceEEEEEcCCcEEEECCCeeeEEc--
Q 015184 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEY-TCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF-- 384 (411)
Q Consensus 308 aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~yi~~~-- 384 (411)
++|||||+++++|+++|++|.+++.+.............. .||..++.....+|+|+|+|.++++++||+++|+++.
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC
Confidence 9999999999999999999999998765322111111223 5987766555679999999955899999999999953
Q ss_pred CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 385 EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 385 ~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
.+..|+++...+. +.+.|||||.
T Consensus 254 ~~~~C~~~~~~~~----~~~~~ilG~~ 276 (299)
T cd05472 254 SSQVCLAFAGTSD----DGGLSIIGNV 276 (299)
T ss_pred CCCEEEEEeCCCC----CCCCEEEchH
Confidence 5678998876531 2357999984
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.8e-47 Score=370.59 Aligned_cols=284 Identities=21% Similarity=0.311 Sum_probs=222.5
Q ss_pred CcCCCCCCCCCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcc
Q 015184 61 DLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEF 140 (411)
Q Consensus 61 ~~pl~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~ 140 (411)
.+||. ++.+.+|+++|+||||||++.|+|||||+++||+|..|..| .|..++.|||++|+|++..
T Consensus 129 ~v~L~----n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~-----~C~~~~~yd~s~SsT~~~~------ 193 (453)
T PTZ00147 129 NVELK----DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTE-----GCETKNLYDSSKSKTYEKD------ 193 (453)
T ss_pred eeecc----ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcc-----cccCCCccCCccCcceEEC------
Confidence 45665 67889999999999999999999999999999999988632 1233478999999999874
Q ss_pred cCCCCCCCCCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCcccccee
Q 015184 141 CHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGI 220 (411)
Q Consensus 141 C~~~~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGI 220 (411)
.+.|.+.|++|++ .|.+++|+|+||+.. ++ ..|+++....+.-........|||
T Consensus 194 ----------------~~~f~i~Yg~Gsv-sG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGI 247 (453)
T PTZ00147 194 ----------------GTKVEMNYVSGTV-SGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGI 247 (453)
T ss_pred ----------------CCEEEEEeCCCCE-EEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccce
Confidence 3789999999985 999999999998753 34 568888765431000034468999
Q ss_pred eecCCCCC------cHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEE
Q 015184 221 IGFGKSNS------SMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQV 288 (411)
Q Consensus 221 lGLg~~~~------s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v 288 (411)
||||++.. +++.+|++||+|+ ++||+||++. ...|.|+|||+|+ +++.|+|+. .+.+|.|.++ +.+
T Consensus 248 LGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~v 325 (453)
T PTZ00147 248 FGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHF 325 (453)
T ss_pred ecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEE
Confidence 99999764 5788999999996 8999999864 4579999999995 679999995 6689999998 477
Q ss_pred CCEEeecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEc
Q 015184 289 GLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFE 368 (411)
Q Consensus 289 ~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 368 (411)
++... ....+||||||+++++|+++++++.+++++.... ....+..+|+ . ..+|+|+|.|
T Consensus 326 g~~~~----------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~---~~~~y~~~C~-----~-~~lP~~~f~f- 385 (453)
T PTZ00147 326 GNVSS----------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVP---FLPLYVTTCN-----N-TKLPTLEFRS- 385 (453)
T ss_pred CCEec----------CceeEEECCCCchhcCCHHHHHHHHHHhCCeecC---CCCeEEEeCC-----C-CCCCeEEEEE-
Confidence 65432 2456999999999999999999999988543211 1111224673 2 4589999999
Q ss_pred CCcEEEECCCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 369 NSVSLKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 369 gg~~~~l~~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
+|..++|||++|+.+. ....|+ +|++.+. ..+.|||||+
T Consensus 386 ~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~ 428 (453)
T PTZ00147 386 PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL----EKNTFILGDP 428 (453)
T ss_pred CCEEEEECHHHheeccccCCCcEEEEEEEECCC----CCCCEEECHH
Confidence 8999999999999864 346897 7887542 1247999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.4e-46 Score=366.31 Aligned_cols=282 Identities=21% Similarity=0.362 Sum_probs=221.0
Q ss_pred CcCCCCCCCCCCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCC--CCCCcCCCCCcCccCCCCCCCCCceecCCC
Q 015184 61 DLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQ 138 (411)
Q Consensus 61 ~~pl~~~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~--~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~ 138 (411)
.+||. ++.+.+|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++..
T Consensus 128 ~~~l~----d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~-------~~~yd~s~SsT~~~~---- 192 (450)
T PTZ00013 128 VIELD----DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI-------KNLYDSSKSKSYEKD---- 192 (450)
T ss_pred ceeee----ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc-------CCCccCccCcccccC----
Confidence 45665 677889999999999999999999999999999999986 4554 478999999999873
Q ss_pred cccCCCCCCCCCCCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccc
Q 015184 139 EFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALD 218 (411)
Q Consensus 139 ~~C~~~~~~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~d 218 (411)
.+.+.+.|++|++ .|.+++|+|++|+.. ++ ..|+++......-.......+|
T Consensus 193 ------------------~~~~~i~YG~Gsv-~G~~~~Dtv~iG~~~--------~~-~~f~~~~~~~~~~~~~~~~~~d 244 (450)
T PTZ00013 193 ------------------GTKVDITYGSGTV-KGFFSKDLVTLGHLS--------MP-YKFIEVTDTDDLEPIYSSSEFD 244 (450)
T ss_pred ------------------CcEEEEEECCceE-EEEEEEEEEEECCEE--------Ec-cEEEEEEeccccccceeccccc
Confidence 4789999999985 999999999998854 33 5788877653210000234689
Q ss_pred eeeecCCCCC------cHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEE
Q 015184 219 GIIGFGKSNS------SMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAV 286 (411)
Q Consensus 219 GIlGLg~~~~------s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i 286 (411)
||||||++.. +++.+|++||+|+ ++||+||++. ...|.|+|||+|+ +++.|+|+. .+.+|.|.++ +
T Consensus 245 GIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v 322 (450)
T PTZ00013 245 GILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-V 322 (450)
T ss_pred ceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-E
Confidence 9999999754 5889999999996 8999999864 4579999999996 678999995 6689999998 6
Q ss_pred EECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEE
Q 015184 287 QVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFH 366 (411)
Q Consensus 287 ~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~ 366 (411)
.++.... ....++|||||+++++|++++++++++++..... ....+..+| +. ..+|+|+|+
T Consensus 323 ~~G~~~~----------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~---~~~~y~~~C-----~~-~~lP~i~F~ 383 (450)
T PTZ00013 323 HFGKQTM----------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP---FLPFYVTTC-----DN-KEMPTLEFK 383 (450)
T ss_pred EECceec----------cccceEECCCCccccCCHHHHHHHHHHhCCeecC---CCCeEEeec-----CC-CCCCeEEEE
Confidence 6664332 1456999999999999999999999988643211 111123466 33 458999999
Q ss_pred EcCCcEEEECCCeeeEEc---CCEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 367 FENSVSLKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 367 f~gg~~~~l~~~~yi~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
| +|.+++|+|++|+.+. ++..|+ ++++.+. +.+.|||||+
T Consensus 384 ~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~ 427 (450)
T PTZ00013 384 S-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDI----DDNTFILGDP 427 (450)
T ss_pred E-CCEEEEECHHHheehhccCCCCeeEEEEEECCC----CCCCEEECHH
Confidence 9 8899999999999763 456896 8876542 2357999985
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-45 Score=354.48 Aligned_cols=304 Identities=20% Similarity=0.316 Sum_probs=234.8
Q ss_pred eCCCCce-EEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCC---------CCC
Q 015184 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP---------LTD 151 (411)
Q Consensus 82 iGtP~q~-~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~---------~~~ 151 (411)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.+.|+++.|....... ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999999853 45889999999999998665432 235
Q ss_pred CCCCCCCCceee-eCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcH
Q 015184 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM 230 (411)
Q Consensus 152 c~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~ 230 (411)
|.. +.|.|... |++|+...|.+++|+|+|+...+.......++++.|||+....... ....+|||||||+...|+
T Consensus 63 c~~-~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CGN-NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CCC-CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 633 45888665 7899888999999999998654332111247899999998753211 123489999999999999
Q ss_pred HHHhhhcCCCCCceEEeecCC-CCCceeeeCCcCC----------CCceeecCcCC---CCceEEEEEEEEECCEEeecC
Q 015184 231 ISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLP 296 (411)
Q Consensus 231 ~~~l~~~g~i~~~Fs~~l~~~-~~~G~l~fGg~d~----------~~~~~~p~~~~---~~~w~v~l~~i~v~g~~~~~~ 296 (411)
+.||..++..+++||+||.+. ..+|.|+||+.+. +.++|+|++.+ ..+|.|+|++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999998776668999999874 3579999999874 67899999865 369999999999999998776
Q ss_pred Ccccc--ccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCccccc--CCCCceeeecC----CccccCceEEEEEc
Q 015184 297 TDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV--HDEYTCFQYSE----SVDEGFPNVTFHFE 368 (411)
Q Consensus 297 ~~~~~--~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~--~~~~~C~~~~~----~~~~~~P~i~f~f~ 368 (411)
+..+. ..+..++||||||++++||.++|++|.+++.+.......... .....||.... +....+|+|+|+|.
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 55443 234567999999999999999999999999877643222111 11248987532 22457999999996
Q ss_pred C-CcEEEECCCeeeEEc-CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 369 N-SVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 369 g-g~~~~l~~~~yi~~~-~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
| |++++|||++|+++. ++..|++|.+.+... .+.|||||+
T Consensus 299 g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~---~~~~IlG~~ 340 (362)
T cd05489 299 GGGVNWTIFGANSMVQVKGGVACLAFVDGGSEP---RPAVVIGGH 340 (362)
T ss_pred CCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCC---CceEEEeeh
Confidence 5 699999999999987 567899998765421 358999985
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8.2e-45 Score=352.36 Aligned_cols=289 Identities=24% Similarity=0.322 Sum_probs=215.6
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCC
Q 015184 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (411)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (411)
..|+++|+||||+|+|.|+|||||+++||+|..|..| ++.|||++|+|++..+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~------------------ 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLG------------------ 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCC------------------
Confidence 3699999999999999999999999999999877322 3689999999999854
Q ss_pred CCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC-----
Q 015184 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (411)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~----- 228 (411)
|.|.+.|++|++ .|.+++|+|+|++.. +. ...+.|++.....+.+. .....|||||||++..
T Consensus 55 ----~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 55 ----KGVTVPYTQGSW-EGELGTDLVSIPKGP--NV----TFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDS 121 (364)
T ss_pred ----ceEEEEECcceE-EEEEEEEEEEECCCC--cc----ceEEeeEEEecccccee--cccccceeeeecccccccCCC
Confidence 789999999986 999999999998631 11 11133555554443321 2235799999998643
Q ss_pred ---cHHHHhhhcCCCCCceEEeecCC----------CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCE
Q 015184 229 ---SMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (411)
Q Consensus 229 ---s~~~~l~~~g~i~~~Fs~~l~~~----------~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~ 291 (411)
+++++|.+|+.++++||+||... ..+|.|+||++|+ +++.|+|++ ...+|.|.+++|+|+++
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~ 200 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQ 200 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCE
Confidence 68899999999878999988421 2369999999995 578999996 56799999999999999
Q ss_pred EeecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccc---cCCCCceeeecCCccccCceEEEEEc
Q 015184 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVTFHFE 368 (411)
Q Consensus 292 ~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~P~i~f~f~ 368 (411)
.+..+...+ ....+||||||++++||++++++|.+++.+......... .....+|+.........+|+|+|+|+
T Consensus 201 ~~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 277 (364)
T cd05473 201 SLNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLR 277 (364)
T ss_pred ecccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEc
Confidence 886543322 134699999999999999999999999988753211111 11125786543222235999999995
Q ss_pred CC-----cEEEECCCeeeEEc----CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 369 NS-----VSLKVYPHEYLFPF----EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 369 gg-----~~~~l~~~~yi~~~----~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
|. .+++|||++|+.+. .+..|+++.... ..+.|||||+
T Consensus 278 g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-----~~~~~ILG~~ 324 (364)
T cd05473 278 DENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ-----STNGTVIGAV 324 (364)
T ss_pred cCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeec-----CCCceEEeee
Confidence 42 47899999999864 246897543221 1247999985
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-43 Score=329.70 Aligned_cols=241 Identities=34% Similarity=0.670 Sum_probs=195.1
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCCceeEeCC-CCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCC
Q 015184 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (411)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (411)
++|+++|+||||+|++.|+|||||+++||+|. .|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 46999999999999999999999999999884 45444
Q ss_pred CCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcHHH
Q 015184 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (411)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 232 (411)
.|.|.+.|++|+.++|.+++|+|+|+...+. ..++++.|||+....+.+.. .....|||||||+...++++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 1689999998877899999999999764332 23578999999876554321 34578999999999999999
Q ss_pred HhhhcCCCCCceEEeecCCCCCceeeeCCcCC--CCceeecCcCC--CCceEEEEEEEEECCEEeecCCccccccCCCcE
Q 015184 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ--PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGT 308 (411)
Q Consensus 233 ~l~~~g~i~~~Fs~~l~~~~~~G~l~fGg~d~--~~~~~~p~~~~--~~~w~v~l~~i~v~g~~~~~~~~~~~~~~~~~a 308 (411)
||.++++|+++||+||.+ ..+|.|+||+... +++.|+|+..+ ..+|.|++.+|+||++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999998999999987 4578999996532 57999999755 4799999999999998532 235679
Q ss_pred EEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCC---cEEEECCCeeeEEc-
Q 015184 309 IIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENS---VSLKVYPHEYLFPF- 384 (411)
Q Consensus 309 iiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg---~~~~l~~~~yi~~~- 384 (411)
+|||||+++++|+++| +|+|+|+|.++ ++++||+++|++..
T Consensus 181 ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 181 VFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 9999999999999876 58899999433 79999999999976
Q ss_pred CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 385 EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 385 ~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
.+..|+++....... ..+.|||||+
T Consensus 226 ~~~~Cl~~~~~~~~~--~~~~~ilG~~ 250 (273)
T cd05475 226 KGNVCLGILNGSEIG--LGNTNIIGDI 250 (273)
T ss_pred CCCEEEEEecCCCcC--CCceEEECce
Confidence 556899776543211 1358999985
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.9e-43 Score=327.86 Aligned_cols=237 Identities=25% Similarity=0.393 Sum_probs=193.2
Q ss_pred EEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCCC
Q 015184 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (411)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (411)
|+++|+||||+|++.|+|||||+++||++..|..|..+. ++.||+++|+|++...
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~~-------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLLP-------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceecC--------------------
Confidence 799999999999999999999999999999998876432 3679999999998642
Q ss_pred CCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC-------
Q 015184 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------- 228 (411)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~------- 228 (411)
.+.|.+.|++|+.+.|.+++|+|+|++.. ++++.||+++..++.+. ....++||||||++..
T Consensus 56 -~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 -GATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 47899999999877999999999998754 66899999998765332 3457899999998643
Q ss_pred --cHHHHhhhcCCCCCceEEeecCCCCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecCCccccc
Q 015184 229 --SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302 (411)
Q Consensus 229 --s~~~~l~~~g~i~~~Fs~~l~~~~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ 302 (411)
+++++|.+|+. +++||+||.+ ...|+|+|||+|+ ++++|+|+..+..+|.|++++|+|+++... .
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-------~ 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-------S 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-------e
Confidence 57889998865 7899999987 4689999999996 689999997657899999999999987432 1
Q ss_pred cCCCcEEEcccCceeecChHHHHHHHHHHH-HhCCCCcccccCCCCceeeecCCccccCceEEEEE
Q 015184 303 GDNKGTIIDSGTTLAYLPEMVYEPLVSKII-SQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHF 367 (411)
Q Consensus 303 ~~~~~aiiDTGts~~~lp~~~~~~i~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f 367 (411)
..+..++|||||+++++|.+++++|.+++. +.... .. .+|.++|+.. +|+|+|+|
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~---~~-----~~~~~~C~~~--~P~i~f~~ 251 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDS---EY-----GGWVFPCDTT--LPDLSFAV 251 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccC---CC-----CEEEEECCCC--CCCEEEEE
Confidence 235679999999999999999999999884 22211 11 2334444543 89999999
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-42 Score=322.61 Aligned_cols=230 Identities=37% Similarity=0.727 Sum_probs=196.2
Q ss_pred cEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCC
Q 015184 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (411)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (411)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999975
Q ss_pred CCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcHHHHh
Q 015184 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (411)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~l 234 (411)
|.|.+.|++|+.+.|++++|+|+|++.. ..++++.|||++..++ + .....+||||||+...|++.||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 2678999998888999999999999852 1267899999998876 3 4567899999999999999999
Q ss_pred hhcCCCCCceEEeecCC---CCCceeeeCCcCC---CCceeecCcCC---CCceEEEEEEEEECCEEeecCCcccc--cc
Q 015184 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (411)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~---~~~G~l~fGg~d~---~~~~~~p~~~~---~~~w~v~l~~i~v~g~~~~~~~~~~~--~~ 303 (411)
..++ ++||+||.+. ...|+|+||++|+ +++.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 7999999873 4579999999997 78999999865 57999999999999998875443221 23
Q ss_pred CCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECCCeeeEE
Q 015184 304 DNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFP 383 (411)
Q Consensus 304 ~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~yi~~ 383 (411)
....++|||||+++++|++++ |+|+|+|.+++++.+++++|+++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 467799999999999999987 78999994489999999999997
Q ss_pred c-CCEEEEEEEeCCCCCCCCCCeeeecCC
Q 015184 384 F-EDLWCIGWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 384 ~-~~~~C~~~~~~~~~~~~~~~~~ILGdv 411 (411)
. .+..|+++.... ..+.||||++
T Consensus 219 ~~~~~~C~~~~~~~-----~~~~~ilG~~ 242 (265)
T cd05476 219 VGEGVVCLAILSSS-----SGGVSILGNI 242 (265)
T ss_pred CCCCCEEEEEecCC-----CCCcEEEChh
Confidence 6 567999887653 2468999985
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8.2e-43 Score=332.87 Aligned_cols=278 Identities=27% Similarity=0.514 Sum_probs=225.1
Q ss_pred cEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCC
Q 015184 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (411)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (411)
+|+++|+||||+|+++|++||||+++||++..|..| ..|.....|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----~~~~~~~~y~~~~S~t~~~~~------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----SSCASSGFYNPSKSSTFSNQG------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----THHCTSC-BBGGGSTTEEEEE-------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----cccccccccccccccccccce-------------------
Confidence 599999999999999999999999999999999876 112234789999999998854
Q ss_pred CCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCC-------
Q 015184 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------- 227 (411)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~------- 227 (411)
+.+.+.|++|+ ++|.+++|+|+|++.. ++++.||++....+... .....+||||||++.
T Consensus 58 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ---KPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeccCcc-cccccccceEeeeecc--------ccccceecccccccccc--ccccccccccccCCcccccccC
Confidence 67999999999 6999999999998854 55799999998643211 345689999999742
Q ss_pred CcHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC----CCceeecCcCCCCceEEEEEEEEECCEEeecCCcccc
Q 015184 228 SSMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301 (411)
Q Consensus 228 ~s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~g~~~~~~~~~~~ 301 (411)
.+++++|+++|+|+ ++||++|.+. ...|.|+||++|+ +++.|+|+. ...+|.+.+++|.++++....
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~------ 196 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS------ 196 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE------
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc------
Confidence 47999999999996 9999999985 2469999999996 568999996 778999999999999983221
Q ss_pred ccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcEEEECCCeee
Q 015184 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYL 381 (411)
Q Consensus 302 ~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~yi 381 (411)
.....++||||++++++|.+++++|++++++.... .++..+|+....+|.|+|+| ++.+|+||+++|+
T Consensus 197 -~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~ 264 (317)
T PF00026_consen 197 -SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYI 264 (317)
T ss_dssp -EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHE
T ss_pred -ccceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecchHhc
Confidence 12345999999999999999999999999776542 33444557767799999999 8999999999999
Q ss_pred EEc---CCEEEE-EEEeCCCCCCCCCCeeeecC
Q 015184 382 FPF---EDLWCI-GWQNSGMQSRDRKNMTLLGD 410 (411)
Q Consensus 382 ~~~---~~~~C~-~~~~~~~~~~~~~~~~ILGd 410 (411)
.+. ....|+ +|...+. ....+.||||.
T Consensus 265 ~~~~~~~~~~C~~~i~~~~~--~~~~~~~iLG~ 295 (317)
T PF00026_consen 265 FKIEDGNGGYCYLGIQPMDS--SDDSDDWILGS 295 (317)
T ss_dssp EEESSTTSSEEEESEEEESS--TTSSSEEEEEH
T ss_pred ccccccccceeEeeeecccc--cccCCceEecH
Confidence 987 234896 7777433 22346899995
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.8e-41 Score=320.38 Aligned_cols=245 Identities=25% Similarity=0.448 Sum_probs=202.4
Q ss_pred cEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCC
Q 015184 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (411)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (411)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCC------
Q 015184 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (411)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~------ 228 (411)
.|.+.|++|+.+.|.+++|+|++++.. ++++.|||++... ..+||||||+...
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANSTS---------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecCC---------CCcceeeECCCCCcccccC
Confidence 268899997777999999999998753 5689999999832 3689999999775
Q ss_pred -----cHHHHhhhcCCCC-CceEEeecCC-CCCceeeeCCcCC----CCceeecCcCCC-----CceEEEEEEEEECCEE
Q 015184 229 -----SMISQLASSGGVR-KMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQ-----PHYSINMTAVQVGLDF 292 (411)
Q Consensus 229 -----s~~~~l~~~g~i~-~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~-----~~w~v~l~~i~v~g~~ 292 (411)
+|++||.+||+|+ ++||+||.+. ...|.|+||++|+ ++++|+|+..+. .+|.|.+++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 7999999999996 9999999975 3579999999996 568999997653 6899999999999887
Q ss_pred eecCCccccccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEEcCCcE
Q 015184 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (411)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~ 372 (411)
+..+. ......++|||||++++||.+++++|.+++.+..... ...+..+| ..... |+|+|+| +|++
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~~~~C-----~~~~~-p~i~f~f-~g~~ 235 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLYVVDC-----DAKDD-GSLTFNF-GGAT 235 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEEEEeC-----CCCCC-CEEEEEE-CCeE
Confidence 64321 2346779999999999999999999999997765421 12223466 44444 9999999 8899
Q ss_pred EEECCCeeeEEcC-----CEEEE-EEEeCCCCCCCCCCeeeecCC
Q 015184 373 LKVYPHEYLFPFE-----DLWCI-GWQNSGMQSRDRKNMTLLGDF 411 (411)
Q Consensus 373 ~~l~~~~yi~~~~-----~~~C~-~~~~~~~~~~~~~~~~ILGdv 411 (411)
++||+++|+++.. ...|+ +|++.+ .+.||||++
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~------~~~~iLG~~ 274 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPST------SDYNILGDT 274 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCC------CCcEEeChH
Confidence 9999999999862 67895 888765 157999974
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.1e-39 Score=300.68 Aligned_cols=241 Identities=32% Similarity=0.576 Sum_probs=199.8
Q ss_pred EEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCCC
Q 015184 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (411)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (411)
|+++|.||||+|++.|+|||||+++||+|..|..|..+... ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~---~~~~~~~~s~~~~~---------------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP---RFKYDSSKSSTYKD---------------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC---CCccCccCCceeec----------------------
Confidence 78999999999999999999999999999999877654320 01267777777765
Q ss_pred CCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCC------Cc
Q 015184 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (411)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~------~s 229 (411)
..|.+.+.|++|+. .|.+++|+|+|++.. ++++.|||++.....+ .....+||||||+.. .+
T Consensus 56 ~~~~~~~~Y~~g~~-~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 TGCTFSITYGDGSV-TGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred CCCEEEEEECCCeE-EEEEEEeEEEECCEE--------EeceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 45899999999876 999999999998854 5689999999887533 356789999999988 78
Q ss_pred HHHHhhhcCCCC-CceEEeecCC---CCCceeeeCCcCC----CCceeecCcCC-CCceEEEEEEEEECCEEeecCCccc
Q 015184 230 MISQLASSGGVR-KMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPN-QPHYSINMTAVQVGLDFLNLPTDVF 300 (411)
Q Consensus 230 ~~~~l~~~g~i~-~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~-~~~w~v~l~~i~v~g~~~~~~~~~~ 300 (411)
+++||.+++.|. ++||+||.+. ...|.|+||++|+ +++.|+|++.. ..+|.|.+++|.++++....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----- 198 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----- 198 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee-----
Confidence 999999999995 9999999984 4789999999996 68999999865 78999999999999874111
Q ss_pred cccCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCcccccCCCCceeeecCCccccCceEEEEE
Q 015184 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHF 367 (411)
Q Consensus 301 ~~~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f 367 (411)
......++|||||++++||.+++++|++++.+.... ...|+...|.....+|+|+|+|
T Consensus 199 -~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f 256 (283)
T cd05471 199 -SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF 256 (283)
T ss_pred -cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE
Confidence 233667999999999999999999999999877642 1244555556668899999999
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.9e-30 Score=222.41 Aligned_cols=162 Identities=38% Similarity=0.717 Sum_probs=131.4
Q ss_pred EEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCCC
Q 015184 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (411)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (411)
|+++|.||||+|++.|+|||||+.+|++|. .+.|+|.+|+||+.+.|.++.|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999981 178999999999999999999998775533334457
Q ss_pred CCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCCCCCcHHHHhh
Q 015184 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (411)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~l~ 235 (411)
..|.|.+.|++++.+.|.+++|+|+++....+. ..++++.|||+....+.+ ...+||||||+.+.||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~-----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF-----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS-----TTEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC-----cCCCcccccCCCcccHHHHHH
Confidence 889999999999999999999999999865432 346689999999988654 368999999999999999998
Q ss_pred hcCCCCCceEEeecC--CCCCceeeeCC
Q 015184 236 SSGGVRKMFAHCLDG--INGGGIFAIGH 261 (411)
Q Consensus 236 ~~g~i~~~Fs~~l~~--~~~~G~l~fGg 261 (411)
++ ..++|||||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 45899999998 26789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=3.2e-23 Score=165.87 Aligned_cols=108 Identities=34% Similarity=0.597 Sum_probs=90.9
Q ss_pred EEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccC-CCCCCCCCceecCCCcccCCCCCCCCCCCCCCC
Q 015184 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (411)
Q Consensus 78 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y-~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~ 156 (411)
++|.||||+|++.|+|||||+++||+|..|..|..+. ++.| ++..|++++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~~---------------------- 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSDN---------------------- 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCCC----------------------
Confidence 4799999999999999999999999999998775442 2456 99999999873
Q ss_pred CCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeec
Q 015184 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (411)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGL 223 (411)
.|.|.+.|++|+. .|.+++|+|+|++.. ++++.|||++...+.+. .....+|||||
T Consensus 54 ~~~~~~~Y~~g~~-~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITYGTGSL-SGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred CcEEEEEeCCCeE-EEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc--cccccccccCC
Confidence 4799999999976 899999999998753 66899999999876542 34578999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.73 E-value=3.7e-17 Score=139.95 Aligned_cols=130 Identities=32% Similarity=0.587 Sum_probs=96.4
Q ss_pred ceEEEEEEEEECCEEeecCCccccc-cCCCcEEEcccCceeecChHHHHHHHHHHHHhCCCCc----ccccCCCCceeee
Q 015184 278 HYSINMTAVQVGLDFLNLPTDVFGV-GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK----VHTVHDEYTCFQY 352 (411)
Q Consensus 278 ~w~v~l~~i~v~g~~~~~~~~~~~~-~~~~~aiiDTGts~~~lp~~~~~~i~~~~~~~~~~~~----~~~~~~~~~C~~~ 352 (411)
+|.|++.+|+||++.+.++...|.. +...+++|||||++++||+++|+++.+++........ .........||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999999887633 3467899999999999999999999999988765432 2233455799998
Q ss_pred cC----CccccCceEEEEEcCCcEEEECCCeeeEEc-CCEEEEEEEeCCCCCCCCCCeeeecC
Q 015184 353 SE----SVDEGFPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGD 410 (411)
Q Consensus 353 ~~----~~~~~~P~i~f~f~gg~~~~l~~~~yi~~~-~~~~C~~~~~~~~~~~~~~~~~ILGd 410 (411)
+. .....+|+|+|+|.+|++++|++++|++.. ++..|++|.... .+..+..|||.
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~---~~~~~~~viG~ 140 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSD---ADDDGVSVIGN 140 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEET---STTSSSEEE-H
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccC---CCCCCcEEECH
Confidence 87 355679999999987999999999999998 678999998881 12246789984
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.04 E-value=1.4e-05 Score=61.61 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=62.4
Q ss_pred cEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCCCCCC
Q 015184 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (411)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (411)
.|++++.|+ +++++++||||++.+|+.......+.. ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~-----------------~~~---------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL-----------------PLT---------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC-----------------Ccc----------------------
Confidence 589999999 799999999999999997642111110 000
Q ss_pred CCCCCceeeeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEeeeecccCCCCCCCccccceeeecCC
Q 015184 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (411)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~dGIlGLg~ 225 (411)
......+..++|.........+.+++|+.. ++++.+........ ..+||||+.+
T Consensus 41 -~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~--------~~~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQTANGRVRAARVRLDSLQIGGIT--------LRNVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEecCCCccceEEEcceEEECCcE--------EeccEEEEeCCccc--------CCceEeChHH
Confidence 113566777788766666678999998754 33455555544221 3789999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.23 E-value=0.019 Score=46.26 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=27.6
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCCceeEeC
Q 015184 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (411)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~ 104 (411)
.++.|++++.|. ++++.++||||++.+-++.
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 468899999998 6899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.48 E-value=0.09 Score=39.42 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.3
Q ss_pred EEEEeCCCCceEEEEEECCCCceeEeCC
Q 015184 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (411)
Q Consensus 78 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (411)
+++.|+ .+++++++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 367777 68999999999998887653
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.27 E-value=0.32 Score=39.32 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCC
Q 015184 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (411)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (411)
.....+++++.|+ ++++.+++|||++.+++....
T Consensus 12 ~~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 12 GKVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred ceeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 3456789999999 789999999999999987543
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.91 E-value=0.12 Score=39.18 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.5
Q ss_pred EEEEEEeCCCCceEEEEEECCCCceeEeCCC
Q 015184 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (411)
Q Consensus 76 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (411)
|++++.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 799999999999999997643
No 32
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.50 E-value=0.99 Score=33.77 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.5
Q ss_pred EEEeCCCCceEEEEEECCCCceeEeCCC
Q 015184 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (411)
Q Consensus 79 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (411)
.+.|. ++++++++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 689999999999999997654
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=90.79 E-value=2.2 Score=40.75 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=33.3
Q ss_pred eeCCCCeeeeeEEEEEEEEecccCCccccccCCceEEe----------eeecccCCCCCCCccccceeeecCCCC
Q 015184 163 IYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFG----------CGARQSGNLDSTNEEALDGIIGFGKSN 227 (411)
Q Consensus 163 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~Fg----------~~~~~~~~~~~~~~~~~dGIlGLg~~~ 227 (411)
.|++|.. -|-+.+-+|+|++..... +|-|.++ |.......-. .......||||+|.-.
T Consensus 83 ~F~sgyt-WGsVr~AdV~igge~A~~-----iPiQvI~D~~~~~~P~sC~~~g~~~~t-~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGYT-WGSVRTADVTIGGETASS-----IPIQVIGDSAAPSVPSSCSNSGASMNT-VADLGANGILGIGPFP 150 (370)
T ss_pred hccCccc-ccceEEEEEEEcCeeccc-----cCEEEEcCCCCCCCCchhhcCCCCCCC-cccccCceEEeecCCc
Confidence 4566655 688899999999864432 3333332 2221110111 1345689999999754
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.79 E-value=0.57 Score=33.80 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=30.1
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCC
Q 015184 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108 (411)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~ 108 (411)
..+.+++++.|| ++.+..++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 468899999999 69999999999999998775543
No 35
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.67 E-value=0.69 Score=34.43 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.1
Q ss_pred EEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 286 i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
+.|||+.+. ++||||++.+.+.++.++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 567777653 89999999999999888766
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.72 E-value=1.2 Score=35.77 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCceEEEEEEEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 276 ~~~w~v~l~~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
.++|.++ +.|||+... ++||||++.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3556544 677888653 89999999999999987765
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.08 E-value=1.5 Score=31.63 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred EEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 285 ~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
.+.++|..+. +++|||++-..++.+.++.+
T Consensus 12 ~~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 3667777663 99999999999999988877
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=85.94 E-value=1.4 Score=33.24 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.2
Q ss_pred EEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHHH
Q 015184 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (411)
Q Consensus 285 ~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i~ 328 (411)
.+.|||+.+. +.+|||++.+.++.+.+.++-
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHhC
Confidence 4678888774 899999999999999887663
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=84.08 E-value=2.1 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 285 ~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
.+.+|++.+. +++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4667777663 89999999999999877665
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.88 E-value=1.5 Score=33.59 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.6
Q ss_pred EEEEEeCCCCceEEEEEECCCCceeEeCCC
Q 015184 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (411)
Q Consensus 77 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~ 106 (411)
+.+|.+. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5688888 689999999999998887643
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=83.50 E-value=1.7 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.8
Q ss_pred EEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 286 i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
+.+||+.+. +++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 567888764 89999999999999988775
No 42
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=79.41 E-value=5.3 Score=34.88 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCCCcCCCCCcCccCCCCCCCCCceecCCCcccCCCCCCCCC
Q 015184 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (411)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (411)
..+|-|.++..|- +|++.+++|||-+.+-++...-.. --+|...
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~----------------------- 144 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS----------------------- 144 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc-----------------------
Confidence 4678899999998 899999999999999887643110 1233221
Q ss_pred CCCCCCCCCceeeeCCCCeeeeeEEEEEEEEecccCC
Q 015184 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187 (411)
Q Consensus 151 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~ 187 (411)
...++.+.-++|....-.+-.|.|.||+....
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~ 176 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIGGIRVK 176 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEccEEEc
Confidence 11344555577887566788999999986533
No 43
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=78.70 E-value=3.3 Score=33.32 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=23.7
Q ss_pred EEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 286 i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
+.+||..+. ++||||++.+.++++.++++
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHc
Confidence 556777653 89999999999999987764
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.19 E-value=6.2 Score=34.50 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCceEEEEEEEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 276 ~~~w~v~l~~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
++||+++ ..|||+.+. .++|||.|.+.++.+..+++
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 4677654 678999885 89999999999999876654
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.80 E-value=4.5 Score=30.39 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.2
Q ss_pred EEEeCCCCceEEEEEECCCCceeEeCC
Q 015184 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (411)
Q Consensus 79 ~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (411)
.+.|+ +|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 79999999999999999754
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=73.38 E-value=3.5 Score=31.48 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=22.0
Q ss_pred EEEECCEEeecCCccccccCCCcEEEcccCceeecChHHH
Q 015184 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVY 324 (411)
Q Consensus 285 ~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~ 324 (411)
.|.++|+.+. ++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i~-------------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-------------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-------------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-------------EEEecCCCcceeccccc
Confidence 4677788764 99999999999998653
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=68.66 E-value=6.4 Score=31.73 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEEEECCEEeecCCccccccCCCcEEEcccCceeecChHHHHHH
Q 015184 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 284 ~~i~v~g~~~~~~~~~~~~~~~~~aiiDTGts~~~lp~~~~~~i 327 (411)
-.+++||+.++ |+||||+..+.++.+.++++
T Consensus 27 I~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 34678888874 99999999999999998874
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=68.38 E-value=6.8 Score=29.78 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.3
Q ss_pred cEEEcccCceeecChHHHHHHH
Q 015184 307 GTIIDSGTTLAYLPEMVYEPLV 328 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~~~~i~ 328 (411)
.+.+|||++...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 3899999999999999887764
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=60.81 E-value=6.8 Score=30.64 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.7
Q ss_pred cEEEcccCceee-cChHHHHHH
Q 015184 307 GTIIDSGTTLAY-LPEMVYEPL 327 (411)
Q Consensus 307 ~aiiDTGts~~~-lp~~~~~~i 327 (411)
.+++|||.+... +|.++++++
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc
Confidence 489999999886 999987764
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=60.40 E-value=6.5 Score=31.35 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEcccCc-eeecChHHHHHHH
Q 015184 308 TIIDSGTT-LAYLPEMVYEPLV 328 (411)
Q Consensus 308 aiiDTGts-~~~lp~~~~~~i~ 328 (411)
.+||||.+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999988764
No 51
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=59.61 E-value=12 Score=22.88 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=12.8
Q ss_pred CCccchhhhhhHHhhhhhccccCCcceE
Q 015184 1 MGLCLRNCLCIVLIATAAVGGVSSNHGV 28 (411)
Q Consensus 1 m~~~~~~~~~~ll~~~~~~~~~~~~~~~ 28 (411)
||. +.+.+.+++++++++..+.++.+.
T Consensus 1 Mk~-l~~a~~l~lLal~~a~~~~pG~Vi 27 (36)
T PF08194_consen 1 MKC-LSLAFALLLLALAAAVPATPGNVI 27 (36)
T ss_pred Cce-eHHHHHHHHHHHHhcccCCCCeEE
Confidence 554 334444555555444444454443
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.85 E-value=15 Score=30.90 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=22.6
Q ss_pred EEEEEeCCCCceEEEEEECCCCceeEeCC
Q 015184 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (411)
Q Consensus 77 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 105 (411)
...+.++.-..+++++|||||..-.+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44555666678999999999999888653
No 53
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=55.03 E-value=29 Score=28.38 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.0
Q ss_pred EEEcccCceeecChHHHHHH
Q 015184 308 TIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 308 aiiDTGts~~~lp~~~~~~i 327 (411)
++||||++-.++..+.+.++
T Consensus 35 vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 35 VLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEecCCCcEEccHHHHHhc
Confidence 89999999999988876544
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.63 E-value=32 Score=27.76 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=25.6
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCCceeEeCCCCCCCC
Q 015184 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECP 111 (411)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~~C~~C~ 111 (411)
.....|++++|+ +++++.++|||...+-+..+-+..|.
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 345689999999 79999999999999988764334554
No 55
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=42.97 E-value=23 Score=27.25 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=15.3
Q ss_pred cEEEcccCceeecChHHH
Q 015184 307 GTIIDSGTTLAYLPEMVY 324 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~~ 324 (411)
.++||||++.++++.+-.
T Consensus 13 ~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 13 NVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEEeCCCCCEEEeCCCC
Confidence 489999999999997643
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=41.55 E-value=62 Score=27.38 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.8
Q ss_pred cEEEcccCceeecChHHHHHHH
Q 015184 307 GTIIDSGTTLAYLPEMVYEPLV 328 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~~~~i~ 328 (411)
.+++|||++...+-.++.+.|-
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 4999999999999988877663
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.82 E-value=40 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.1
Q ss_pred EEEEeCCCCc----eEEEEEECCCCcee-Ee
Q 015184 78 AKIGIGTPPK----DYYVQVDTGSDIMW-VN 103 (411)
Q Consensus 78 ~~i~iGtP~q----~~~v~~DTGS~~~W-v~ 103 (411)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888733 68999999999764 54
No 58
>PF15240 Pro-rich: Proline-rich
Probab=32.63 E-value=23 Score=30.29 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=7.6
Q ss_pred chhhhhhHHhhhhhc
Q 015184 5 LRNCLCIVLIATAAV 19 (411)
Q Consensus 5 ~~~~~~~ll~~~~~~ 19 (411)
|+++|+..||||++|
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 445555555555444
No 59
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=32.17 E-value=59 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=17.9
Q ss_pred EEEcccCceeecChHHHHHH
Q 015184 308 TIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 308 aiiDTGts~~~lp~~~~~~i 327 (411)
|.||||+-.+.+.+.-.++.
T Consensus 12 AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 12 ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred EEEecCCchhhcCHHHHHHc
Confidence 99999999999999887764
No 60
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=30.04 E-value=87 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=17.5
Q ss_pred cEEEcccCceeecChHHHHHH
Q 015184 307 GTIIDSGTTLAYLPEMVYEPL 327 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~~~~i 327 (411)
.+++|||++...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 389999999999998887643
No 61
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=27.15 E-value=57 Score=30.05 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.8
Q ss_pred cEEEcccCceeecChHH
Q 015184 307 GTIIDSGTTLAYLPEMV 323 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~ 323 (411)
.+++|||++.+++|..-
T Consensus 15 ~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 15 NLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEeCCCCceeEeeCC
Confidence 38999999999999763
No 62
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=24.15 E-value=1e+02 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.0
Q ss_pred ccEEEE---EEeCC---CCceEEEEEECCCCceeEeCC
Q 015184 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (411)
Q Consensus 74 ~~Y~~~---i~iGt---P~q~~~v~~DTGS~~~Wv~~~ 105 (411)
..|.++ |.||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456654 57873 223457999999999999864
No 63
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=21.16 E-value=1.1e+02 Score=28.86 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.6
Q ss_pred cEEEcccCceeecChHH
Q 015184 307 GTIIDSGTTLAYLPEMV 323 (411)
Q Consensus 307 ~aiiDTGts~~~lp~~~ 323 (411)
.++||||++.+++|...
T Consensus 18 ~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 18 SLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEEeCCCCceEEecCC
Confidence 39999999999998753
Done!