BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015189
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 332

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 171/323 (52%), Gaps = 36/323 (11%)

Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 35  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 89

Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
              +SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 90  AWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTP 149

Query: 212 LLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271
            +  +LAG  + + A  + +S +++V+ P++LG  +     +  + +T   PL +V    
Sbjct: 150 AIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSV---- 205

Query: 272 LLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVG 330
                     +V +  +VVGA+                 E G++I +V++LH   G+ +G
Sbjct: 206 --------AAIVLIIGAVVGASKGKIM------------ESGLLIFAVVVLHNGIGYLLG 245

Query: 331 YLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIMGST 389
           + +A   G     ++A++IEVGMQNS     + A     + +VA+P A+ +V  NI GS 
Sbjct: 246 FFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSL 305

Query: 390 LGFFW-----RYIDPSDSKTSPK 407
           L  +W     ++  P D   S  
Sbjct: 306 LATYWAAKAGKHKKPLDRAGSEN 328


>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 323

 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 30/266 (11%)

Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 30  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 84

Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
             ++SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 85  AWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTP 144

Query: 212 LLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271
            +  +LAG  + + A  + +S +++V+ P++LG  +     +  + +T   PL +V    
Sbjct: 145 AIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSV---- 200

Query: 272 LLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVG 330
                     +V +  +VVGA+                 E G++I +V++LH   G+ +G
Sbjct: 201 --------AAIVLIIGAVVGASKGKIM------------ESGLLIFAVVVLHNGIGYLLG 240

Query: 331 YLSAAICGFKEPQRRAISIEVGMQNS 356
           + +A   G     ++ ++IEVGMQNS
Sbjct: 241 FFAAKWTGLPYDAQKTLTIEVGMQNS 266


>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
           (Glpf) Mutation W48f, F200t
          Length = 281

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL 171
           LI   +G    LK   + F Q  +S++FG      I  T+GV  +    L PA+++ L L
Sbjct: 21  LIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAH---LNPAVTIALWL 77

Query: 172 LSC 174
            +C
Sbjct: 78  FAC 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,079,296
Number of Sequences: 62578
Number of extensions: 353594
Number of successful extensions: 670
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)