Query 015189
Match_columns 411
No_of_seqs 206 out of 1704
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 5.4E-54 1.2E-58 417.7 35.6 310 68-405 5-315 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 2.8E-44 6E-49 357.5 33.2 293 72-385 3-319 (328)
3 TIGR00841 bass bile acid trans 100.0 2.2E-43 4.9E-48 345.3 29.6 271 105-402 9-283 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 4.3E-39 9.3E-44 318.4 32.8 302 76-396 2-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 7.6E-35 1.6E-39 282.7 33.8 322 63-405 2-340 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 1.8E-29 3.9E-34 232.5 19.4 178 108-286 2-185 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 2.6E-28 5.5E-33 242.8 13.6 281 75-382 86-368 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.2 4.1E-10 8.9E-15 112.1 15.5 143 68-217 174-320 (321)
9 PRK09903 putative transporter 99.1 1.1E-09 2.3E-14 108.9 15.3 142 68-217 165-310 (314)
10 COG0679 Predicted permeases [G 99.0 7E-09 1.5E-13 103.0 15.9 150 64-219 156-309 (311)
11 KOG4821 Predicted Na+-dependen 98.9 4.1E-09 9E-14 96.9 7.9 191 65-256 12-222 (287)
12 PF03547 Mem_trans: Membrane t 98.7 1.2E-07 2.6E-12 96.3 13.9 139 74-214 243-385 (385)
13 PRK12460 2-keto-3-deoxyglucona 98.5 2.1E-05 4.5E-10 77.4 20.4 286 68-400 5-309 (312)
14 KOG2718 Na+-bile acid cotransp 98.2 1.4E-06 3E-11 87.8 3.9 227 112-368 52-286 (371)
15 PF03812 KdgT: 2-keto-3-deoxyg 98.1 0.0013 2.8E-08 64.7 22.7 182 68-263 5-200 (314)
16 TIGR00793 kdgT 2-keto-3-deoxyg 97.8 0.00086 1.9E-08 65.6 15.3 182 68-263 5-200 (314)
17 PF05145 AmoA: Putative ammoni 97.6 0.11 2.4E-06 51.9 29.8 110 106-220 27-137 (318)
18 COG3180 AbrB Putative ammonia 97.5 0.11 2.5E-06 52.2 26.7 108 107-219 61-169 (352)
19 PRK05274 2-keto-3-deoxyglucona 97.5 0.015 3.3E-07 58.2 20.7 281 77-400 17-317 (326)
20 PRK03562 glutathione-regulated 97.3 0.39 8.5E-06 52.4 31.6 123 77-207 32-161 (621)
21 COG0475 KefB Kef-type K+ trans 97.3 0.29 6.4E-06 50.4 29.8 134 106-244 62-203 (397)
22 PRK10669 putative cation:proto 97.2 0.44 9.6E-06 51.2 32.4 81 77-162 33-113 (558)
23 PRK03659 glutathione-regulated 97.1 0.61 1.3E-05 50.7 32.0 97 106-207 60-161 (601)
24 PF03547 Mem_trans: Membrane t 96.9 0.017 3.8E-07 58.6 13.8 74 312-386 62-136 (385)
25 PRK05326 potassium/proton anti 96.9 0.87 1.9E-05 49.0 30.5 175 76-258 32-216 (562)
26 PLN03159 cation/H(+) antiporte 96.5 2 4.4E-05 48.5 31.3 69 326-395 364-437 (832)
27 TIGR03082 Gneg_AbrB_dup membra 96.5 0.22 4.8E-06 44.5 16.1 107 105-216 48-155 (156)
28 TIGR00946 2a69 he Auxin Efflux 96.1 0.19 4E-06 50.1 15.2 51 320-370 75-127 (321)
29 TIGR00844 c_cpa1 na(+)/h(+) an 95.7 4.8 0.0001 45.1 25.4 55 75-129 39-98 (810)
30 TIGR00932 2a37 transporter, mo 95.3 3 6.4E-05 40.3 22.7 170 76-257 18-197 (273)
31 TIGR00659 conserved hypothetic 94.8 0.26 5.6E-06 46.8 10.3 87 129-217 82-168 (226)
32 PRK10711 hypothetical protein; 94.6 0.51 1.1E-05 45.0 11.5 87 129-217 83-169 (231)
33 PF04172 LrgB: LrgB-like famil 94.5 0.47 1E-05 44.8 11.2 86 130-217 73-158 (215)
34 PRK15086 ethanolamine utilizat 94.4 6.5 0.00014 39.9 20.7 53 203-256 144-196 (372)
35 PF05145 AmoA: Putative ammoni 94.4 1.3 2.8E-05 44.3 14.8 109 105-218 205-314 (318)
36 PRK04288 antiholin-like protei 94.4 0.57 1.2E-05 44.7 11.4 87 129-217 88-174 (232)
37 PRK12460 2-keto-3-deoxyglucona 94.3 0.51 1.1E-05 46.9 11.4 106 107-218 195-304 (312)
38 COG0679 Predicted permeases [G 94.2 1.9 4.1E-05 42.9 15.5 68 323-391 74-143 (311)
39 PF03601 Cons_hypoth698: Conse 94.1 6.8 0.00015 39.0 23.3 137 75-217 27-169 (305)
40 COG2855 Predicted membrane pro 93.0 11 0.00024 37.9 21.4 135 77-217 40-178 (334)
41 COG3180 AbrB Putative ammonia 92.1 7.9 0.00017 39.2 16.0 110 104-218 237-347 (352)
42 COG1346 LrgB Putative effector 92.0 2.1 4.6E-05 40.6 11.1 88 129-218 85-172 (230)
43 TIGR00698 conserved hypothetic 92.0 6.5 0.00014 39.7 15.4 106 108-218 66-176 (335)
44 COG4651 RosB Kef-type K+ trans 88.5 28 0.00062 34.8 24.3 132 80-218 36-176 (408)
45 PF15201 Rod_cone_degen: Progr 88.1 0.46 1E-05 33.6 2.4 26 385-410 6-31 (54)
46 PF03601 Cons_hypoth698: Conse 86.7 11 0.00024 37.6 12.2 46 319-364 89-135 (305)
47 PF03977 OAD_beta: Na+-transpo 84.6 48 0.001 33.5 19.8 100 112-218 74-174 (360)
48 PRK05274 2-keto-3-deoxyglucona 84.3 3.5 7.6E-05 41.5 7.5 106 107-217 202-311 (326)
49 TIGR03136 malonate_biotin Na+- 83.8 54 0.0012 33.5 18.6 100 112-218 110-211 (399)
50 PF05684 DUF819: Protein of un 83.5 57 0.0012 33.5 31.1 105 106-217 57-168 (378)
51 TIGR00831 a_cpa1 Na+/H+ antipo 83.1 70 0.0015 34.2 24.0 52 77-130 25-76 (525)
52 PRK09903 putative transporter 81.1 60 0.0013 32.1 29.5 248 105-388 40-304 (314)
53 KOG2722 Predicted membrane pro 80.3 2.1 4.5E-05 43.4 4.1 147 68-216 240-402 (408)
54 PF05982 DUF897: Domain of unk 79.7 44 0.00095 33.6 13.1 130 63-199 164-302 (327)
55 PF00999 Na_H_Exchanger: Sodiu 79.2 0.2 4.3E-06 50.7 -3.6 138 105-248 51-197 (380)
56 PRK12657 putative monovalent c 78.4 38 0.00082 28.1 10.4 72 334-406 26-98 (100)
57 PRK12600 putative monovalent c 77.3 39 0.00084 27.7 10.4 68 334-402 22-90 (94)
58 TIGR00840 b_cpa1 sodium/hydrog 77.0 1.1E+02 0.0025 33.0 22.0 78 77-157 38-120 (559)
59 TIGR01109 Na_pump_decarbB sodi 76.6 89 0.0019 31.5 14.5 100 112-218 68-174 (354)
60 PRK03818 putative transporter; 75.3 20 0.00044 38.6 10.2 47 315-362 93-140 (552)
61 PRK03562 glutathione-regulated 73.1 37 0.00081 37.2 11.7 103 107-217 271-379 (621)
62 TIGR00793 kdgT 2-keto-3-deoxyg 71.9 27 0.00058 34.8 9.1 35 106-143 199-233 (314)
63 PRK15060 L-dehydroascorbate tr 71.5 1.4E+02 0.0029 31.3 18.2 61 63-130 207-268 (425)
64 PF03956 DUF340: Membrane prot 71.5 86 0.0019 29.0 12.4 73 323-398 66-138 (191)
65 PF03812 KdgT: 2-keto-3-deoxyg 71.4 20 0.00042 35.8 8.2 22 107-128 200-221 (314)
66 COG1346 LrgB Putative effector 70.5 1E+02 0.0022 29.5 16.1 77 315-395 93-172 (230)
67 PRK03659 glutathione-regulated 69.1 99 0.0021 33.7 13.9 103 107-217 268-376 (601)
68 TIGR03802 Asp_Ala_antiprt aspa 68.2 1.1E+02 0.0024 33.2 13.8 74 107-182 61-135 (562)
69 PF03616 Glt_symporter: Sodium 66.4 1.6E+02 0.0034 30.1 16.6 85 317-401 98-189 (368)
70 PRK15477 oxaloacetate decarbox 66.2 1.6E+02 0.0036 30.2 15.3 100 112-218 139-245 (433)
71 PRK15476 oxaloacetate decarbox 66.0 1.7E+02 0.0036 30.2 15.3 100 112-218 139-245 (433)
72 TIGR00698 conserved hypothetic 65.7 1.1E+02 0.0024 30.9 12.5 43 321-363 97-140 (335)
73 PRK04972 putative transporter; 65.6 56 0.0012 35.4 11.0 49 314-363 91-140 (558)
74 PRK15475 oxaloacetate decarbox 65.3 1.7E+02 0.0037 30.1 15.4 100 112-218 139-245 (433)
75 PF03956 DUF340: Membrane prot 64.7 1.2E+02 0.0026 28.1 17.5 128 80-217 4-138 (191)
76 PLN03159 cation/H(+) antiporte 64.1 1E+02 0.0022 35.1 13.1 131 85-217 300-436 (832)
77 PF06826 Asp-Al_Ex: Predicted 60.2 1.3E+02 0.0029 27.2 14.4 51 314-366 85-136 (169)
78 PRK04288 antiholin-like protei 59.0 1.7E+02 0.0037 28.0 16.0 38 315-352 152-189 (232)
79 PF01943 Polysacc_synt: Polysa 58.9 1.5E+02 0.0032 27.2 17.1 64 191-256 4-69 (273)
80 COG3263 NhaP-type Na+/H+ and K 58.9 2.5E+02 0.0054 29.8 25.0 139 107-250 65-211 (574)
81 PRK04972 putative transporter; 58.7 2.7E+02 0.0058 30.2 15.2 76 107-184 63-139 (558)
82 PRK02830 Na(+)-translocating N 58.5 1.6E+02 0.0035 27.6 12.4 79 194-272 41-127 (202)
83 PF04172 LrgB: LrgB-like famil 57.9 1.7E+02 0.0037 27.7 15.3 75 315-391 136-212 (215)
84 TIGR03802 Asp_Ala_antiprt aspa 57.8 2.5E+02 0.0053 30.5 14.2 103 108-214 452-559 (562)
85 KOG2722 Predicted membrane pro 56.9 12 0.00026 38.2 3.6 82 311-392 74-164 (408)
86 COG2855 Predicted membrane pro 55.4 1.6E+02 0.0034 29.8 11.2 27 320-346 100-126 (334)
87 PF04346 EutH: Ethanolamine ut 54.2 2.6E+02 0.0056 28.6 18.3 36 223-258 162-197 (354)
88 PRK10711 hypothetical protein; 54.2 2.1E+02 0.0045 27.5 15.2 40 315-354 147-186 (231)
89 TIGR00832 acr3 arsenical-resis 53.9 1.3E+02 0.0027 30.3 10.5 63 140-202 251-313 (328)
90 TIGR00210 gltS sodium--glutama 53.5 2.8E+02 0.006 28.8 28.2 147 67-217 23-183 (398)
91 PRK01061 Na(+)-translocating N 52.8 2.2E+02 0.0048 27.5 12.4 32 240-271 104-135 (244)
92 PRK10669 putative cation:proto 51.8 2.9E+02 0.0064 29.6 13.6 103 107-216 279-386 (558)
93 PF06826 Asp-Al_Ex: Predicted 51.2 1.9E+02 0.0041 26.2 14.7 83 107-191 57-141 (169)
94 PRK09796 PTS system cellobiose 50.6 2.9E+02 0.0064 29.3 13.0 33 145-177 158-191 (472)
95 PRK03818 putative transporter; 50.1 3.6E+02 0.0079 29.1 14.9 75 107-183 64-139 (552)
96 COG3763 Uncharacterized protei 47.2 54 0.0012 25.4 5.0 41 317-357 8-57 (71)
97 PF06808 DctM: DctM-like trans 46.7 3.5E+02 0.0076 28.0 14.9 64 60-130 204-268 (416)
98 PRK12456 Na(+)-translocating N 44.5 2.7E+02 0.0059 26.0 12.5 77 195-271 43-123 (199)
99 PRK00523 hypothetical protein; 42.3 68 0.0015 25.0 4.9 42 315-356 7-57 (72)
100 PRK12599 putative monovalent c 41.9 1.9E+02 0.0041 23.5 9.9 62 338-400 29-90 (91)
101 PRK01844 hypothetical protein; 41.0 71 0.0015 24.9 4.9 40 317-356 8-56 (72)
102 PF11120 DUF2636: Protein of u 40.8 65 0.0014 24.4 4.5 35 225-259 2-36 (62)
103 TIGR01943 rnfA electron transp 40.6 3E+02 0.0066 25.5 12.1 33 240-272 84-116 (190)
104 PF03390 2HCT: 2-hydroxycarbox 40.5 3.7E+02 0.0081 28.1 11.6 169 39-210 217-408 (414)
105 TIGR01625 YidE_YbjL_dupl AspT/ 40.5 2.7E+02 0.0058 24.8 11.6 80 107-189 57-139 (154)
106 PF03253 UT: Urea transporter; 39.8 1.4E+02 0.003 29.7 8.2 70 323-395 40-110 (301)
107 TIGR01940 nqrE NADH:ubiquinone 38.8 3.3E+02 0.0073 25.5 12.2 32 241-272 95-126 (200)
108 KOG4050 Glutamate transporter 37.8 3.1E+02 0.0068 24.8 10.7 81 52-139 29-114 (188)
109 PRK09292 Na(+)-translocating N 37.1 3.6E+02 0.0079 25.4 12.8 31 241-271 84-114 (209)
110 COG0786 GltS Na+/glutamate sym 37.0 1.6E+02 0.0034 30.5 8.1 91 317-407 100-196 (404)
111 COG1883 OadB Na+-transporting 36.7 3.5E+02 0.0075 27.1 10.0 99 113-218 90-189 (375)
112 TIGR00659 conserved hypothetic 35.6 4E+02 0.0087 25.4 16.1 35 316-350 147-181 (226)
113 PRK05151 electron transport co 32.7 4.1E+02 0.0089 24.7 12.6 76 195-272 42-117 (193)
114 PRK06161 putative monovalent c 31.0 2.8E+02 0.0062 22.3 9.9 65 334-399 22-87 (89)
115 TIGR00844 c_cpa1 na(+)/h(+) an 28.4 2.8E+02 0.0062 31.5 9.0 80 109-188 300-381 (810)
116 PF04246 RseC_MucC: Positive r 27.4 2.5E+02 0.0054 24.0 6.9 22 316-337 71-92 (135)
117 PF05982 DUF897: Domain of unk 26.9 6.7E+02 0.015 25.3 24.1 177 145-349 64-272 (327)
118 COG0786 GltS Na+/glutamate sym 26.1 7.6E+02 0.016 25.7 19.7 146 66-218 24-185 (404)
119 PF03616 Glt_symporter: Sodium 25.7 7.2E+02 0.016 25.3 27.8 180 67-253 23-242 (368)
120 COG0475 KefB Kef-type K+ trans 25.5 7.5E+02 0.016 25.4 14.3 100 86-190 251-354 (397)
121 TIGR00210 gltS sodium--glutama 25.0 7.9E+02 0.017 25.5 16.6 83 317-400 98-188 (398)
122 KOG1307 K+-dependent Ca2+/Na+ 24.3 1.6E+02 0.0034 31.3 5.7 118 138-264 426-561 (588)
123 PF07760 DUF1616: Protein of u 23.2 3.9E+02 0.0085 26.1 8.2 29 323-351 32-65 (287)
124 TIGR00783 ccs citrate carrier 23.2 5.2E+02 0.011 26.3 9.1 101 76-179 209-311 (347)
125 PF03773 DUF318: Predicted per 22.0 7.1E+02 0.015 24.4 9.8 59 338-398 80-138 (307)
126 PF13955 Fst_toxin: Toxin Fst, 21.1 1.5E+02 0.0033 17.5 2.8 16 235-250 2-17 (21)
127 COG1593 DctQ TRAP-type C4-dica 20.9 9.4E+02 0.02 24.8 16.5 67 57-130 155-222 (379)
128 COG4132 ABC-type uncharacteriz 20.1 6.3E+02 0.014 24.3 8.2 55 344-398 220-277 (282)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=5.4e-54 Score=417.68 Aligned_cols=310 Identities=36% Similarity=0.588 Sum_probs=286.8
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHH
Q 015189 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT 146 (411)
Q Consensus 68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v 146 (411)
|.++.. .+.+++|+++.+.++...|+.+.++++ .+..+++++||.+|++++.+|+++.. +|||.++.++++||+
T Consensus 5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~----~~~~~l~lImf~mGl~Ls~~d~~~~~-~~p~~vligl~~qfv 79 (319)
T COG0385 5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGS----AIPIALALIMFGMGLTLSREDFLAGL-KHPRLVLIGLAAQFV 79 (319)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHhccccchhhhH----HHHHHHHHHHHhcCCCCCHHHHHHhh-cchHHHHHHHHHHHH
Confidence 445333 567999999999999999999999985 46779999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCh
Q 015189 147 IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDA 226 (411)
Q Consensus 147 l~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~ 226 (411)
+||++++++++.+++|++++.|+++++|||+|+.||+||+++|||++++++++.+||+++++++|+++.++.|+++++|.
T Consensus 80 lmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~ 159 (319)
T COG0385 80 LMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV 159 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhh
Q 015189 227 VKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKS 306 (411)
Q Consensus 227 ~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~ 306 (411)
++++.++++.+++|+++|+.+|++.|++.++.++.++.++..++.++++..++.+.+.+.+.
T Consensus 160 ~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~------------------ 221 (319)
T COG0385 160 GGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS------------------ 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH------------------
Confidence 99999999999999999999999999999999999999999999999999999888766541
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015189 307 ILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIM 386 (411)
Q Consensus 307 ~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~ 386 (411)
...+.+.+++++.++|..||+.+|++|+|++|++|++||.|+||.++|+++|..||++|.+++|.++|++||++.
T Consensus 222 -----~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~ 296 (319)
T COG0385 222 -----GLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMS 296 (319)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHH
Confidence 124667778888999999999999999999999999999999999999999999776699999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCC
Q 015189 387 GSTLGFFWRYIDPSDSKTS 405 (411)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~ 405 (411)
+++++++|+||..++.+++
T Consensus 297 ~a~la~~~~~~~~~~~~~~ 315 (319)
T COG0385 297 GAVLAGLYARRILKAAEKK 315 (319)
T ss_pred HHHHHHHHHhccccccccc
Confidence 9999999999876555443
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=2.8e-44 Score=357.53 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=246.4
Q ss_pred HHhhHHHHHHHH----HHHHHhhcccccchhhhcc----chhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 72 TAASLYPLYVTV----GGVIACLKPSAFGWFVQRG----PASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 72 ~~~~~~p~~i~~----~~llgl~~P~~~~~~~~~~----p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
+++++++.+++. +.++|+..|+.+.+.+... ...+.+.++++||++|++++.+|+++.+ ||||.+..+++.
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~-~~pk~~~~~~~~ 81 (328)
T TIGR00832 3 LLERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVF-KDPKGLILSLFI 81 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHH-cCchHHHHHHHH
Confidence 345555555544 6688999999988886421 1123456778999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC---
Q 015189 144 QYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG--- 219 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~-~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g--- 219 (411)
||+++|+++|++++++ +++++++.|+++++|||||++||+||+++|||+++++.+|.+||+++++++|.+++++.|
T Consensus 82 qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~ 161 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSP 161 (328)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999975 999999999999999999999999999999999999999999999999999999988876
Q ss_pred -----cccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HH-HhcccchhHHHHHHHHHHHHHHhhhhHHHhhh
Q 015189 220 -----TYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAA-----VK-VVTPFTPLFAVLMSSLLACSVFSENLVRLKSS 288 (411)
Q Consensus 220 -----~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~-----~~-~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~ 288 (411)
+++++|..+++.+++.++++|+++|+.+|++.+++ .+ +.+|..+.++.+++.+++...++.|.+.+.+.
T Consensus 162 ~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~ 241 (328)
T TIGR00832 162 IWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIEL 241 (328)
T ss_pred cccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34689999999999999999999999999999854 33 66677777888777888888888887766541
Q ss_pred hhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC
Q 015189 289 VVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT 368 (411)
Q Consensus 289 i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~ 368 (411)
.++...+..++++++.++|.+||+++|.+|++++|+||+++|+|+||.++|+++|..+|+
T Consensus 242 --------------------~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~ 301 (328)
T TIGR00832 242 --------------------PLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFG 301 (328)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCC
Confidence 012344556778899999999999999999999999999999999999999999999998
Q ss_pred Cc-cchHHHHHHHHHHHH
Q 015189 369 SS-MVALPPAMSAVIMNI 385 (411)
Q Consensus 369 ~p-~~alp~~i~~l~q~i 385 (411)
++ ..+.+.++..++|..
T Consensus 302 ~~~~~a~~~~~~~l~e~~ 319 (328)
T TIGR00832 302 LNSGAALATVVGPLIEVP 319 (328)
T ss_pred CCcccHHHHHhhhhhehh
Confidence 64 455555555555543
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=2.2e-43 Score=345.32 Aligned_cols=271 Identities=37% Similarity=0.605 Sum_probs=246.6
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHH
Q 015189 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~ 184 (411)
.+.+.++++||.+|++++.+|+++.+ ||||.+..+++.|++++|+++|++++.++++++++.|+++++||||+.++++|
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~-~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHL-RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHH
Confidence 34566999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccc----cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcc
Q 015189 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTP 260 (411)
Q Consensus 185 t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~----vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~ 260 (411)
|+++|||.++++.++.++|+++++++|+++.++.+...+ +|+.+++.+ +.++++|+++|+.+|+++|+..++.++
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~~~~~ 166 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAKIILK 166 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 999999999999999999999999999999998766544 999999999 999999999999999999999888888
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015189 261 FTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFK 340 (411)
Q Consensus 261 ~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~ 340 (411)
.+.++.+.+.+++..+++.|.+.+.+ +.+.+++.+++++.++|.+||+.+|.+|++
T Consensus 167 -~~~~s~~~l~liv~~~~~~~~~~i~~-----------------------~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~ 222 (286)
T TIGR00841 167 -VGLISVFLLSVIIAVVGGINVENLAT-----------------------IGPLLLLVGILLPLAGFLLGYLLAKLAGLP 222 (286)
T ss_pred -CchHHHHHHHHHHHHHHHhhHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888877777777777665543 123456777889999999999999999999
Q ss_pred ccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015189 341 EPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 402 (411)
Q Consensus 341 ~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~ 402 (411)
++|+||+++|+|+||+++|++++.++|+ |+.++|.++|.+||++.+..++.+|+|+....+
T Consensus 223 ~~~~~t~~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~~ 283 (286)
T TIGR00841 223 WARCRTISIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIHFCYL 283 (286)
T ss_pred HhhheeeeeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999996 889999999999999999999999998765443
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=4.3e-39 Score=318.43 Aligned_cols=302 Identities=27% Similarity=0.393 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhccc-hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 015189 76 LYPLYVTVGGVIACLKPSAFGWFVQRGP-ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (411)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~~~~p-~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (411)
++++.+++++++|+.+|+.+...+...+ ....+++++++|..|++++.+|+++.+ ||+|....++..+|+++|+++++
T Consensus 2 ~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~-~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 2 WFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAAL-RNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred chHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999998875544321 245678999999999999999999998 89999999999999999999999
Q ss_pred HHHHc--CCChHHHHHHHHHccCchhhHHH-HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-CcccccChHHHH
Q 015189 155 VSKFL--GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA-GTYVPVDAVKLS 230 (411)
Q Consensus 155 l~~~~--~l~~~~~~GliL~a~~P~~~~s~-v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~-g~~v~vd~~~l~ 230 (411)
+.+++ ..++++..|+++++|+|++..|+ +||+++|||.+.++.++.++|+++++++|+++.++. ++..++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 99988 46899999999999999998877 699999999999999999999999999999999998 678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHH-HhhhhhccccccchhhHHHhhhhhh
Q 015189 231 ISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR-LKSSVVGAALTSDLSLISRIKSILS 309 (411)
Q Consensus 231 ~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~-i~~~i~~~~~~~~~~~~~~l~~~~~ 309 (411)
.++...+++|+++|+.+|++++++.+|.++..+.++..+++++++..++.+..+ +.++ . + .
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~---------------~-~--~ 222 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHS---------------V-S--A 222 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh---------------C-C--H
Confidence 999999999999999999999999999999999999999999999988876332 1110 0 0 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCC----ccchHHHHHHHHHHHH
Q 015189 310 GELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS----SMVALPPAMSAVIMNI 385 (411)
Q Consensus 310 ~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~----p~~alp~~i~~l~q~i 385 (411)
.+...+....+.++...+.++|+.+|.+|++++|++|+.|+.++||.++|++++...|++ +...+|.++||..|.+
T Consensus 223 ~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~ 302 (313)
T PF13593_consen 223 AALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF 302 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence 123445566778899999999999999999999999999999999999999999999975 3689999999999999
Q ss_pred HHHHHHHHhhc
Q 015189 386 MGSTLGFFWRY 396 (411)
Q Consensus 386 ~~~~~a~~~~~ 396 (411)
.++.++..|+|
T Consensus 303 ~~s~la~~~~r 313 (313)
T PF13593_consen 303 VGSFLASRLAR 313 (313)
T ss_pred HHHHHHHHHcC
Confidence 99999999986
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-35 Score=282.73 Aligned_cols=322 Identities=19% Similarity=0.217 Sum_probs=277.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH----HHhhcccccchhhhc----cchhHHHHHHHHHHHHcccCChHHHHHHHHcCc
Q 015189 63 KPRWEYLLSTAASLYPLYVTVGGV----IACLKPSAFGWFVQR----GPASYSLSLGLIMLAMGLTLELKDLISLFMQRP 134 (411)
Q Consensus 63 ~~~~~~~l~~~~~~~p~~i~~~~l----lgl~~P~~~~~~~~~----~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p 134 (411)
+.++.|.+++++++++.|+.++++ +|..+|+.+...+.. ....+.+++.+||+.+.++++.+++++.. +++
T Consensus 2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~-k~~ 80 (342)
T COG0798 2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVF-KDP 80 (342)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHH-hcc
Confidence 346678889999999888877664 577778865555421 12357889999999999999999999998 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHH
Q 015189 135 LSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL 213 (411)
Q Consensus 135 ~~l~~~l~~~~vl~Pll~~~l~~~~-~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~ 213 (411)
|.+.+.++.|+++.|+++|+++++| +..|++..|+++++.+||..++.+|+++++||.++++..++++.++++++.|.+
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcc-cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHhcccchhHHHHHHHHHHHHHHhhhhHHHh
Q 015189 214 TKILAGTY-VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAA------VKVVTPFTPLFAVLMSSLLACSVFSENLVRLK 286 (411)
Q Consensus 214 l~ll~g~~-v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~------~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~ 286 (411)
.+++.+.. ++++++++.+++++++.+|+++|++.|+...|+ .+++.|..++++..++.+.+..+|+.+++.+.
T Consensus 161 ~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv 240 (342)
T COG0798 161 GKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIV 240 (342)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHH
Confidence 98888754 789999999999999999999999999976543 24667777778888888888899999999887
Q ss_pred hhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHh
Q 015189 287 SSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAH 366 (411)
Q Consensus 287 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~ 366 (411)
++ |. +...+++..++.....|.++|+++|.+|++++|+.+++|+++.+|.++|+++|.+.
T Consensus 241 ~~-----------p~---------~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~l 300 (342)
T COG0798 241 EQ-----------PL---------DILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIAL 300 (342)
T ss_pred hC-----------hH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHh
Confidence 63 11 34456677788888999999999999999999999999999999999999999999
Q ss_pred cC-CccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015189 367 FT-SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 405 (411)
Q Consensus 367 f~-~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~~~~ 405 (411)
|| +...++..+++.++|...--.+++.+++.+++-.+++
T Consensus 301 fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~ 340 (342)
T COG0798 301 FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNE 340 (342)
T ss_pred cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccC
Confidence 98 5678888899999999988888888877665554444
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.97 E-value=1.8e-29 Score=232.52 Aligned_cols=178 Identities=38% Similarity=0.623 Sum_probs=154.8
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHccCchhhHHHHHHH
Q 015189 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVVTL 186 (411)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~t~ 186 (411)
+.++++||++|++++.+|+++.. ||||.+..+++.|++++|+++|+++ ..++++++++.|+++++|||||.++++||+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~-~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVL-RRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHH-HSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 47899999999999999999998 8999999999999999999999999 788999999999999999999999999999
Q ss_pred HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHhccc
Q 015189 187 IARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD---AVKLSISTLQIVVAPVLLGSYMQSAFP--AAVKVVTPF 261 (411)
Q Consensus 187 ~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd---~~~l~~~ll~~vllPl~lG~~lr~~~~--~~~~~i~~~ 261 (411)
++|||.++++.++.++++++++++|+++.++.+...+.| +++++.+++.++++|+++|+++|++.| +..+++++.
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~ 160 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF 160 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998877777 899999999999999999999999999 888899999
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHh
Q 015189 262 TPLFAVLMSSLLACSVFSENLVRLK 286 (411)
Q Consensus 262 ~~~~s~~~l~liv~~v~~~~~~~i~ 286 (411)
.+.++.+++++++...++.|.+.+.
T Consensus 161 ~~~~s~~~l~~~i~~~~~~~~~~i~ 185 (187)
T PF01758_consen 161 LKPLSFILLLLIIVLIFASNASVIA 185 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH----
T ss_pred hhHHHHHHHHHHHHHHHHHhccccc
Confidence 9999998888888777777766543
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.6e-28 Score=242.75 Aligned_cols=281 Identities=37% Similarity=0.522 Sum_probs=240.8
Q ss_pred hHHHHHHHHHHHHHhhcc-cccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 015189 75 SLYPLYVTVGGVIACLKP-SAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV 153 (411)
Q Consensus 75 ~~~p~~i~~~~llgl~~P-~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~ 153 (411)
..+|........+....| ..+.|+... ....++...|+++|++.|.+++++.+ +||+.+.+|++.|+++||+.+|
T Consensus 86 ~~lp~~~~~~~v~~~~~~~~~~t~l~~~---~~~~gl~~~~ls~g~~~~~~~~~~~~-~rP~~~~lG~v~q~~i~pl~~f 161 (371)
T KOG2718|consen 86 LILPLLVFLLKVLFLLDPLLAFTWLVTG---CFPPGLLSNMLSFGIKLDMDLFAGMI-KRPTPLALGFVPQYLIMPLLGF 161 (371)
T ss_pred cchhHHHHHHHHHhhcCCcccceEEEeC---ccccHHHHHHHHHhcCccHHHHhhHh-hCCcceeehHHHHHHHHHHHHH
Confidence 478999999998888888 778888642 34578999999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccChHHHHHH
Q 015189 154 IVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA-RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIS 232 (411)
Q Consensus 154 ~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a-~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ 232 (411)
.+++.+.++...++|.+++.|++++..++..++.. +||..+++.||.++|+.+++++|++..++.+..++.|...+..+
T Consensus 162 ~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s 241 (371)
T KOG2718|consen 162 LLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS 241 (371)
T ss_pred hhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence 99999988888878888888887777766555555 99999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhH
Q 015189 233 TLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGEL 312 (411)
Q Consensus 233 ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~ 312 (411)
.++++.+|+.+|.++|+++|+..+.+.+.++.++.....+.+......|.+.+.. ..
T Consensus 242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-----------------------~~ 298 (371)
T KOG2718|consen 242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-----------------------FG 298 (371)
T ss_pred hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-----------------------HH
Confidence 9999999999999999999999999999999999877777666666555544332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHH
Q 015189 313 GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVI 382 (411)
Q Consensus 313 ~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~ 382 (411)
+.++..+..++++||..||+.++-.+-+..++|++++|+|+||..+++++++.+|.||.++.+++...+.
T Consensus 299 ~~i~~~~~~l~l~g~l~~Y~~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v~ 368 (371)
T KOG2718|consen 299 YQILLLGAALPLAGFLAGYLLSFSPLDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSVL 368 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhhh
Confidence 5677788899999999999997433333558999999999999999999999999999888877665443
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.19 E-value=4.1e-10 Score=112.09 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=112.4
Q ss_pred HHHHHHhhHH-HHHHHHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 68 YLLSTAASLY-PLYVTVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 68 ~~l~~~~~~~-p~~i~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
+.++++-++. ....++|.++ |+-.|+......+. .-....++.|+..|+.++.++.+ ++.+......+.
T Consensus 174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~---lg~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~ 246 (321)
T TIGR00946 174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISI---LSGATTPMALFSLGLALSPRKIK----LGVRDAILALIV 246 (321)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHH---HHHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHH
Confidence 3444443333 3344444433 44446544333221 34678899999999999877653 345667788889
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
+++++|++++++...++++++.....++++++|++..+.++++.+|+|.+++...+.++|+++++++|+|..++
T Consensus 247 klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 247 RFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>PRK09903 putative transporter YfdV; Provisional
Probab=99.13 E-value=1.1e-09 Score=108.92 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=109.8
Q ss_pred HHHHHHhhHHH-HHHHHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 68 YLLSTAASLYP-LYVTVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 68 ~~l~~~~~~~p-~~i~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
|.++++.++.+ ...++|.++ |+-.|+......+. .-....++.|+..|+++...+++ .+ +....+.+.
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~---lg~~~~PlaL~~iG~~L~~~~~~----~~-~~~~~~~~~ 236 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNL---IAKANSGVAVFAAGLTLAAHKFE----FS-AEIAYNTFL 236 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccc----cc-HHHHHHHHH
Confidence 34444433333 334444432 44456644433321 34678899999999998876542 12 345677788
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
++++.|++++++...+++++.....+++++++|++..+.+++...|+|.+++...+.+||+++.+++|+|++++
T Consensus 237 Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 237 KLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999875
No 10
>COG0679 Predicted permeases [General function prediction only]
Probab=99.02 E-value=7e-09 Score=103.05 Aligned_cols=150 Identities=24% Similarity=0.291 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhhHHHHHH-HHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHH
Q 015189 64 PRWEYLLSTAASLYPLYV-TVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILF 139 (411)
Q Consensus 64 ~~~~~~l~~~~~~~p~~i-~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~ 139 (411)
....+..+.+.++.+++. ++|.++ |+..|+......+ ..-....++.|+..|++++.++.++ .+++.+..
T Consensus 156 ~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~---~l~~a~~pl~li~lG~~L~~~~~~~---~~~~~~~~ 229 (311)
T COG0679 156 KSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVD---LLASAASPLALIALGLSLAFLKLKG---SKPPIILI 229 (311)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHH---HHHHhhhhHHHHHHhhhcchhhhcc---ccchhHHH
Confidence 344556666655544444 444433 5666764433322 2456789999999999999955443 23555666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015189 140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (411)
Q Consensus 140 ~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g 219 (411)
....+++++|+++++.+++++++++....+++++++|++..+.+++++.|+|.+++...+.++|+++.+++|.+...+.+
T Consensus 230 ~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 230 ALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66679999999999999999999999999999999999999999999999999999999999999999999999887754
No 11
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.89 E-value=4.1e-09 Score=96.87 Aligned_cols=191 Identities=21% Similarity=0.204 Sum_probs=140.4
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch-hH-HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHH
Q 015189 65 RWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA-SY-SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGC 141 (411)
Q Consensus 65 ~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~-~~-~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l 141 (411)
..+|..++. .+++-..+.+....+-+-|+.+.-.+.+.|- .+ -+..+-+++..|++++.|++...+ ++|+..+.++
T Consensus 12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~-~~w~LhLFil 90 (287)
T KOG4821|consen 12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAM-LNWRLHLFIL 90 (287)
T ss_pred HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHH-hCCchHHHHH
Confidence 346888888 6778888888887777778766544433321 01 235566789999999999999998 8899888999
Q ss_pred HHHHHHHHHHHHHHHHHc---CCChHHHHHHHHHccCchhhHHHH-HHHHcCCChhhH-HHHHHHHHHHHHHHHHHHHHH
Q 015189 142 AAQYTIMPTSGVIVSKFL---GLPPALSVGLILLSCCPGGTASNV-VTLIARGDVPLS-IVMTMCTTLGAVLFTPLLTKI 216 (411)
Q Consensus 142 ~~~~vl~Pll~~~l~~~~---~l~~~~~~GliL~a~~P~~~~s~v-~t~~a~Gd~~la-~~lt~~stlls~~~~Pl~l~l 216 (411)
+..+.+.|-..|++..+. +.|+++..|+.+.+|||+..+|+| .|..+|||.... +.....+++++....|-....
T Consensus 91 I~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~ 170 (287)
T KOG4821|consen 91 ILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQM 170 (287)
T ss_pred HHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999887654 467799999999999999999996 599999997332 233345555555666655555
Q ss_pred HhCcc--------cc----cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015189 217 LAGTY--------VP----VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVK 256 (411)
Q Consensus 217 l~g~~--------v~----vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~ 256 (411)
+..+. +. .-+..++.+....+++|...|...+..+|+-+.
T Consensus 171 LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (287)
T KOG4821|consen 171 LLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA 222 (287)
T ss_pred HHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence 54211 11 123345667778899999999999998887544
No 12
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.75 E-value=1.2e-07 Score=96.27 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHhhccccc----chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHH
Q 015189 74 ASLYPLYVTVGGVIACLKPSAF----GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP 149 (411)
Q Consensus 74 ~~~~p~~i~~~~llgl~~P~~~----~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P 149 (411)
.+-.....++|.++++.-+..- .++.+.....-....++.||.+|.++.....+... +.+......+.+++++|
T Consensus 243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~--~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL--GWKPSIIAVLVRLIILP 320 (385)
T ss_pred hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch--hhHHHHHHHHHHHHHHH
Confidence 3334445666666665543322 22222111123567889999999988766543222 23344456888999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015189 150 TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLT 214 (411)
Q Consensus 150 ll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l 214 (411)
++++++.+.++++++....+++.+++|++..+.+++..++.|.+.+......+++++++++|+|+
T Consensus 321 ~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 321 LIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999973
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.48 E-value=2.1e-05 Score=77.41 Aligned_cols=286 Identities=19% Similarity=0.208 Sum_probs=153.3
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHH
Q 015189 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA 142 (411)
Q Consensus 68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~ 142 (411)
|.++++ --.+.+=+++|+++.-++|+.+. ..+.... -....+++.+|++|.+++.|+..+.+ +|.- .-+.
T Consensus 5 ~~~~kiPgg~m~vPl~lga~inTf~P~~l~-iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l-~kg~---~l~~ 79 (312)
T PRK12460 5 KAIKKIPGGMMVVPLLIGALINTFFPQALE-IGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQAL-LKGG---VLTI 79 (312)
T ss_pred hhhccCCCceeHHHHHHHHHHHhccCcchh-hCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhh-hhhh---hhhh
Confidence 344555 23344446788888889999743 2221000 13568899999999999999988887 4332 2245
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH--HH---HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 143 AQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN--VV---TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 143 ~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~--v~---t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
.++++-=++++.++++++.+.- .|+-.++..-.-+.+| .| +..+|-+.+- -..... ++---|+...+.
T Consensus 80 ~K~~~~~~~g~~~~~~~g~~g~--~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~-gA~~~~----sl~~GPf~tm~a 152 (312)
T PRK12460 80 TKLGVAIVIGLLVGKFFGAEGI--FGLSGLAIVAAMSNSNGGLYAALMGEFGDERDV-GAISIL----SLNDGPFFTMLA 152 (312)
T ss_pred HHHHHHHHHHHHHHHHcCcccc--cchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhh-hHHhhh----hhccCcHHHHHH
Confidence 6888888889999999986652 2333322222222222 33 4444443332 222222 333335444433
Q ss_pred hCcc--cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHH-HhhhhHHHhhhhhcccc
Q 015189 218 AGTY--VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSV-FSENLVRLKSSVVGAAL 294 (411)
Q Consensus 218 ~g~~--v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v-~~~~~~~i~~~i~~~~~ 294 (411)
.+.. .++++..+ .-.++|+++|+.++...+++.+..++-.+. .+.+..+.. +..|.+++.+
T Consensus 153 Lga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~I~~------- 216 (312)
T PRK12460 153 LGAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRKFLTKGGPL----LIPFFAFALGAGINLSMLLQ------- 216 (312)
T ss_pred HHHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHHHHhccceE----eHHHHHHHhcCCeeHHHHHH-------
Confidence 3321 24554322 348999999999999877777777765543 111100000 1112222221
Q ss_pred ccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHHHHH--hcCCcc
Q 015189 295 TSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATA--HFTSSM 371 (411)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~la~~--~f~~p~ 371 (411)
... .-++..++...+.+..+|+++|++|.+++...+++-+ .-|. .-+.+++.. .+. |.
T Consensus 217 ---------------~G~-~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~st--AGnAIcgpAAVaAadP~~~-~~ 277 (312)
T PRK12460 217 ---------------AGL-AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASST--AGNAVATPLAIAAADPSLA-PV 277 (312)
T ss_pred ---------------hCh-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH--hhHHHHHHHHHHHhchhHH-HH
Confidence 111 1223334445677889999999997766654444322 3344 222223221 121 21
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 015189 372 ---VALPPAMSAVIMNIMGSTLGFFWRYIDPS 400 (411)
Q Consensus 372 ---~alp~~i~~l~q~i~~~~~a~~~~~~~~~ 400 (411)
+..=++-..++-.+...++..+|.||.++
T Consensus 278 ~~~Ataqvaa~vivTail~P~~t~~~~k~~~~ 309 (312)
T PRK12460 278 AAAATAQVAASVIVTAILTPLLTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112334466667777777788777543
No 14
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.16 E-value=1.4e-06 Score=87.80 Aligned_cols=227 Identities=20% Similarity=0.223 Sum_probs=158.6
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT-IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG 190 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v-l~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G 190 (411)
..|+..|++++.+++.++. ++++.+...+..++- ++|+..+.....+..++..+...+...++|++..++++..-.++
T Consensus 52 ~~~~~~~c~~~i~~~~~h~-~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~ 130 (371)
T KOG2718|consen 52 FVMFSLGCNLTISLLWRHS-LRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKL 130 (371)
T ss_pred Hhhcccccceeccchhhhh-cCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCc
Confidence 5689999999999988876 677677777778888 99999999998888888889999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHHHHHh----CcccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhH
Q 015189 191 DVPLSIVMTMCTTLGAVLFTP-LLTKILA----GTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLF 265 (411)
Q Consensus 191 d~~la~~lt~~stlls~~~~P-l~l~ll~----g~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~ 265 (411)
|.+....++.-.+.+.+..+| ++++=+. +.....+...-..-++...+.|.-.|..+++.+++....+...+..+
T Consensus 131 ~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~ 210 (371)
T KOG2718|consen 131 DMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTI 210 (371)
T ss_pred cHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHH
Confidence 999999999988888888887 3322111 11122222111122455678899999999998877666666666666
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCccc
Q 015189 266 AVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAG--FFVGYLSAAICGFKEPQ 343 (411)
Q Consensus 266 s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~--f~~G~~l~r~lg~~~~~ 343 (411)
+.++.+++.-..-....+.+. .+ +...+.. ..+..++ +.+|+++.+ +-.
T Consensus 211 stv~avi~~pl~s~~l~~~l~---------------------~~-d~~~v~~--s~~~vv~~pl~lG~lL~~-----~~~ 261 (371)
T KOG2718|consen 211 STVLAVILTPLLSILLGRALI---------------------PV-DALGVIA--SILQVVGLPLALGLLLNK-----WFP 261 (371)
T ss_pred HHHHHHHHHHHHHHhhchhhh---------------------cc-cchhhhh--hhhHHhHHHHHHHHHhcc-----cCc
Confidence 655544322111000011100 00 1111122 3344555 778887763 456
Q ss_pred hhhhhhhhhcchhHHHHHHHHHhcC
Q 015189 344 RRAISIEVGMQNSSLGVVLATAHFT 368 (411)
Q Consensus 344 ~~al~~~~g~rN~~Lai~la~~~f~ 368 (411)
+++..++.++||.++...+-...|+
T Consensus 262 k~t~~i~~~~~~vsv~~t~l~~~~p 286 (371)
T KOG2718|consen 262 KRTVAIEPGLPPVSVCLTILCLAFP 286 (371)
T ss_pred cceeeeecCCCchHHHhhhhhhcCC
Confidence 6889999999999999988887776
No 15
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.09 E-value=0.0013 Score=64.69 Aligned_cols=182 Identities=15% Similarity=0.246 Sum_probs=113.5
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
|-++++ --.+.+=+++|+++--++|+.++...+.... -....+++.+|++|.+++.|+..+.+ ||-- .-++.
T Consensus 5 ~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~l-kkg~---~ll~~ 80 (314)
T PF03812_consen 5 KTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVL-KKGG---VLLLV 80 (314)
T ss_pred HhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHH-Hhhh---HHHHH
Confidence 444444 3456666788888899999986643321100 13568899999999999999999988 4332 22467
Q ss_pred HHHHHHHHHHHHHHHcCCCh---HHHHHH---HHHccCchhhHHH--HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015189 144 QYTIMPTSGVIVSKFLGLPP---ALSVGL---ILLSCCPGGTASN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK 215 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~~l~~---~~~~Gl---iL~a~~P~~~~s~--v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ 215 (411)
++++-=++++++.++++.+. ....|+ .+++++-....+- ..+..+|-+.+ .-... +++...-|+...
T Consensus 81 K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~~----i~sl~~GPf~tM 155 (314)
T PF03812_consen 81 KFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAFS----ILSLNDGPFFTM 155 (314)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHHH----HHHhhhhHHHHH
Confidence 88888888999999997653 122232 2333322222221 12333333333 33332 345555666665
Q ss_pred HHhCc--ccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccch
Q 015189 216 ILAGT--YVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTP 263 (411)
Q Consensus 216 ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~ 263 (411)
+..|. ..++|+..+ .-.++|+++|+.+-..-|++.+.+.|-.+
T Consensus 156 l~LG~sG~a~ip~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~~~ 200 (314)
T PF03812_consen 156 LALGASGLANIPWMSL-----VAALLPIIIGMILGNLDPDFRKFLAPGVP 200 (314)
T ss_pred HHHhhccccCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Confidence 55443 356777554 56889999999999888888877766543
No 16
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.78 E-value=0.00086 Score=65.65 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=110.8
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
|.++++ --.+.+=+++|+++.-++|+.+..+.+.... -....+++.+|++|.+++.|+-.+.+ +|.- .-+..
T Consensus 5 ~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l-~kg~---~l~~~ 80 (314)
T TIGR00793 5 RSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVL-RKSG---TLVVT 80 (314)
T ss_pred hhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhh-hhcc---eeeeH
Confidence 334444 2334444678888888999986553322100 13568899999999999999988887 4332 22356
Q ss_pred HHHHHHHHHHHHHHHcCCCh---HHHHHHHHHccCchhhHHH--HH---HHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015189 144 QYTIMPTSGVIVSKFLGLPP---ALSVGLILLSCCPGGTASN--VV---TLIARGDVPLSIVMTMCTTLGAVLFTPLLTK 215 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~~l~~---~~~~GliL~a~~P~~~~s~--v~---t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ 215 (411)
++++-=++++.++++++.+. ....|+-.++..-.-+.+| .| +..+|-+.+-+. .. +.++---|+...
T Consensus 81 K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA-~~----i~sl~~GPf~TM 155 (314)
T TIGR00793 81 KIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGA-FV----LMSLESGPLMTM 155 (314)
T ss_pred HHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhh-hh----hhhhccCcHHHH
Confidence 88888888999999998654 2222333333222222222 33 444444433222 22 233444566666
Q ss_pred HHhCcc--cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccch
Q 015189 216 ILAGTY--VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTP 263 (411)
Q Consensus 216 ll~g~~--v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~ 263 (411)
+..|.. .++++.. +.-.++|+++|+.+-..-|++.+.+.|-.+
T Consensus 156 i~LG~sGlA~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~ 200 (314)
T TIGR00793 156 VILGTAGIASFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQ 200 (314)
T ss_pred HHHhhccCCCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCC
Confidence 555532 4677654 457889999999999888888777766543
No 17
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.55 E-value=0.11 Score=51.90 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-HH
Q 015189 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VV 184 (411)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v~ 184 (411)
......++=..+|.+++++.+.+.. +.+..+....+...+..-+.+|.+.+.-+.|.. --+.+++|+|.+.. ++
T Consensus 27 r~~~q~ilG~~iG~~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~l 101 (318)
T PF05145_consen 27 RNAGQAILGVSIGSSFTPEVLAQLA-SWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVAL 101 (318)
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHH
Confidence 3456666667789999999998875 555555555555666666667777777776643 45789999999877 57
Q ss_pred HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 015189 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT 220 (411)
Q Consensus 185 t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~ 220 (411)
++..|+|...-+....+=-++-++++|+....+.+.
T Consensus 102 a~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 102 AEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred HHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999887653
No 18
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.54 E-value=0.11 Score=52.18 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-HHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VVT 185 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v~t 185 (411)
.....+.=..+|.+++.+++.... +++-.....++......-+.+|.+.+.-..|... -..+++|||.+.. .++
T Consensus 61 ~~~q~ilG~~ig~~~t~s~l~~l~-~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA 135 (352)
T COG3180 61 KAGQVILGIMIGASLTPSVLDTLK-SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIA 135 (352)
T ss_pred HHHHHHHHHHHhhhcCHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHH
Confidence 334444445689999999998775 6676666666666666667788887765555433 3578999999988 579
Q ss_pred HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015189 186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (411)
Q Consensus 186 ~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g 219 (411)
+-.|.|.++...+..+=-+.-..+.|+....+.+
T Consensus 136 ~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 136 QDYGADLRLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999989889999999998874
No 19
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.54 E-value=0.015 Score=58.20 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 015189 77 YPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSG 152 (411)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~ 152 (411)
..+=+++|.++.-++|+... +.+.... -....+++.+|++|.+++.++....+ +|.-.+ ++.++.+-=+++
T Consensus 17 m~vpl~~g~~i~tf~P~~~~-~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l-~~g~~l---~~~k~~~~~~~~ 91 (326)
T PRK05274 17 MLVPLLLGALINTFAPGALY-FGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVL-KKGGTL---LLTKFAVAALVG 91 (326)
T ss_pred eeHHHHHHHHHHHhCCccee-eCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhh-hhchhH---HHHHHHHHHHHH
Confidence 34446778888888898532 2211000 13568889999999999999988877 433222 345676666677
Q ss_pred HHHHHHcCCCh---HHHHHHHHH------ccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc--c
Q 015189 153 VIVSKFLGLPP---ALSVGLILL------SCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT--Y 221 (411)
Q Consensus 153 ~~l~~~~~l~~---~~~~GliL~------a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~--~ 221 (411)
+.++++++.+. ....|...+ .-.=++......+...+....-+... ++.-.-|....++.+. .
T Consensus 92 ~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i~------lsl~~Gp~~tM~lL~aagl 165 (326)
T PRK05274 92 VIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKEDAGAFVL------MSLEDGPFMTMLALGAAGL 165 (326)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCcchHHH------HHHhhhHHHHHHHHHhhCc
Confidence 77777776432 222222211 22222333333333322211111111 2222235444444332 1
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhH
Q 015189 222 VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 301 (411)
Q Consensus 222 v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~ 301 (411)
.+++..++. -+++|+++|+.++...+++.+...+-.+.+--..... +. ...|.+++.+
T Consensus 166 a~~p~~~li-----~allplliG~~lgnl~~~l~~~~~~Gi~~lLp~~~~~--lG-~~l~lq~i~~-------------- 223 (326)
T PRK05274 166 ASFPPPALV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVLIPFFAFA--LG-NGIDLGTIIT-------------- 223 (326)
T ss_pred ccCCCchhh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHHHHH--Hh-cceeHhHHHh--------------
Confidence 345554442 2229999999999987777777666544311111111 00 0112222211
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHH-HHHHHH--hcC--CccchHHH
Q 015189 302 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLG-VVLATA--HFT--SSMVALPP 376 (411)
Q Consensus 302 ~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~La-i~la~~--~f~--~p~~alp~ 376 (411)
..+ .-+++ .+..++..+..+|+..|+++.+++ ..-.+..++..|...+ .+++.. .+. .+.+++-+
T Consensus 224 ----~G~----~GilL-~~~~~~~t~~~~~~~~Rl~~~~~g-~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~V 293 (326)
T PRK05274 224 ----AGL----SGILL-GVAVVAVTGIPLYLADRLIGGGNG-VAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQV 293 (326)
T ss_pred ----cCC----cchhh-hhhHhhccchhhHhHhheeecCCC-cchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHH
Confidence 011 11222 233445667778999998864333 2334444455565322 223321 221 12233333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Q 015189 377 AMSAVIMNIMGSTLGFFWRYIDPS 400 (411)
Q Consensus 377 ~i~~l~q~i~~~~~a~~~~~~~~~ 400 (411)
+...++-.+...++..+|.||..+
T Consensus 294 A~~vivt~il~P~l~~~~~k~~~~ 317 (326)
T PRK05274 294 AAAVIVTAILAPILTAWWSKRVGK 317 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333345556666666667665544
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.30 E-value=0.39 Score=52.41 Aligned_cols=123 Identities=19% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 015189 77 YPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (411)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~--~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (411)
....++.|+++| |..+.+..+- ........+.++||..|+.++++++++.. | +.+..+ ..|.++.-+++++
T Consensus 32 vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~-~--~~~~~g-~~qv~~~~~~~~~ 104 (621)
T PRK03562 32 VLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR-R--SIFGGG-ALQMVACGGLLGL 104 (621)
T ss_pred HHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH-H--HHHHHH-HHHHHHHHHHHHH
Confidence 444455666666 4433332210 00123578889999999999999998652 2 223332 3455554455566
Q ss_pred HHHHcCCCh--HHHHHHHHHccCchhhHHHHHHHHcCCChh---hHHHHHHHHHHHHH
Q 015189 155 VSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIARGDVP---LSIVMTMCTTLGAV 207 (411)
Q Consensus 155 l~~~~~l~~--~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~---la~~lt~~stlls~ 207 (411)
+++.++.+. .+..|..+..++ ++....++...-.-+.. .+.....+.-++++
T Consensus 105 ~~~~~g~~~~~al~ig~~la~SS-taiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 105 FCMLLGLRWQVALLIGLGLALSS-TAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 667776654 333444443332 33334445444333333 34444445554443
No 21
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.29 Score=50.41 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHHHH-HcCCCh--HHHHHHHHHccCchhhHH
Q 015189 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS-GVIVSK-FLGLPP--ALSVGLILLSCCPGGTAS 181 (411)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll-~~~l~~-~~~l~~--~~~~GliL~a~~P~~~~s 181 (411)
-...+.++||..|+..|.+++++.. | .. ..+...--+..|++ +..... .++.+. ....|..+.. ..++..+
T Consensus 62 aelGvi~LlF~~GLE~~~~~l~~~~-~-~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~-sS~~i~~ 136 (397)
T COG0475 62 AELGVVFLLFLIGLEFDLERLKKVG-R-SV--GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALAL-SSTAIVL 136 (397)
T ss_pred HHHhHHHHHHHHHHCcCHHHHHHhc-h-hh--hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH-HHHHHHH
Confidence 3568889999999999999998763 2 21 22222223444533 322222 355443 3444443322 2333444
Q ss_pred HHHHHHcCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-hHHHHHHHHHHHHHHHHHH
Q 015189 182 NVVTLIARGDVP---LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD-AVKLSISTLQIVVAPVLLG 244 (411)
Q Consensus 182 ~v~t~~a~Gd~~---la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd-~~~l~~~ll~~vllPl~lG 244 (411)
.++..+-+=+.+ .......+.-+.++....+...+..+...+.+ ...+...+.....+=+..|
T Consensus 137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 455554333333 44455555666666666665555444333333 2444444444444444444
No 22
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.21 E-value=0.44 Score=51.19 Aligned_cols=81 Identities=25% Similarity=0.342 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 015189 77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS 156 (411)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~ 156 (411)
....++.|+++|-...+........ ......++.++||..|++++++++++. + +....+...++++.-++++++.
T Consensus 33 ivg~IlaGillGp~~lg~~~~~~~~-~~la~lGli~llF~~Gle~d~~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK10669 33 LVGYLLAGVLAGPFTPGFVADTKLA-PELAELGVILLMFGVGLHFSLKDLMAV--K--SIAIPGAIAQIAVATLLGMALS 107 (558)
T ss_pred HHHHHHHHHhhCccccccccchHHH-HHHHHHHHHHHHHHhHhcCCHHHHHHH--h--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666663222211111100 113466888999999999999998754 2 2233344456565555667677
Q ss_pred HHcCCC
Q 015189 157 KFLGLP 162 (411)
Q Consensus 157 ~~~~l~ 162 (411)
+.++.+
T Consensus 108 ~~~~~~ 113 (558)
T PRK10669 108 AVLGWS 113 (558)
T ss_pred HHhCCC
Confidence 777654
No 23
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.10 E-value=0.61 Score=50.73 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHccCchhhHHHH
Q 015189 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNV 183 (411)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~--~~~~GliL~a~~P~~~~s~v 183 (411)
...++.++||..|+.++++++++.. | +.+..+ ..|.++.-++.+++...++.+. ....|+.+ +.+.++....+
T Consensus 60 aelGvv~LLF~iGLel~~~~l~~~~-~--~~~~~g-~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~l-a~SSTaiv~~i 134 (601)
T PRK03659 60 SELGVVFLMFIIGLELNPSKLWQLR-R--SIFGVG-AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGL-AMSSTAMALQL 134 (601)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-H--HHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3568889999999999999998652 2 223332 3344443334444555566553 23334222 22334444445
Q ss_pred HHHHcCCChh---hHHHHHHHHHHHHH
Q 015189 184 VTLIARGDVP---LSIVMTMCTTLGAV 207 (411)
Q Consensus 184 ~t~~a~Gd~~---la~~lt~~stlls~ 207 (411)
....-.-+.. ++.....+.-+.++
T Consensus 135 L~e~~~~~t~~G~~~l~vll~~Di~~i 161 (601)
T PRK03659 135 MREKGMNRSESGQLGFSVLLFQDLAVI 161 (601)
T ss_pred HHHcccccCchHHHHHHHHHHHHHHHH
Confidence 5554433333 33444444544333
No 24
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.91 E-value=0.017 Score=58.57 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015189 312 LGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIM 386 (411)
Q Consensus 312 ~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p~~alp~~i~~l~q~i~ 386 (411)
.+.+.+...+...+++.+++...|.++.+++++.....+++..|. .+++.+....|++...+. ..+|.+.+++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~-~~~~~~~~~i~ 136 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAY-AIIFDVVNNII 136 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhh-ehHHHHhhHHH
Confidence 344455556667888899999999999999999999999999999 699999999997532332 23344444443
No 25
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.89 E-value=0.87 Score=49.05 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhcccccchhh-hccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHH--H
Q 015189 76 LYPLYVTVGGVIACLKPSAFGWFV-QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS--G 152 (411)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~-~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll--~ 152 (411)
.....+++|+++|-..+.....-. .........++.++||..|++++++++++.. + +.+..+.+. ++.|.+ +
T Consensus 32 ~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~-~--~~~~la~~g--v~~t~~~~g 106 (562)
T PRK05326 32 SLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPAL-G--PALSLATLG--VLITAGLTG 106 (562)
T ss_pred HHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHH-H--HHHHHHHHH--HHHHHHHHH
Confidence 456666777777743322111000 0001134678999999999999999998765 2 223222221 122322 3
Q ss_pred HHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC----ChhhHHHH---HHHHHHHHHHHHHHHHHHHhCcccccC
Q 015189 153 VIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG----DVPLSIVM---TMCTTLGAVLFTPLLTKILAGTYVPVD 225 (411)
Q Consensus 153 ~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G----d~~la~~l---t~~stlls~~~~Pl~l~ll~g~~v~vd 225 (411)
+...++++.+ ...++++-++.-.+..+.++.-+.+. |..+...+ ..++-..+++++=+.+.+..+...+.+
T Consensus 107 ~~~~~l~g~~--~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~ 184 (562)
T PRK05326 107 LFAHWLLGLD--WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLS 184 (562)
T ss_pred HHHHHHhcCC--HHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcch
Confidence 3334556654 34445544444444434443333222 22332222 233445565554444444433322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 015189 226 AVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVV 258 (411)
Q Consensus 226 ~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i 258 (411)
. ......+..+.+-+++|....+......++.
T Consensus 185 ~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~ 216 (562)
T PRK05326 185 W-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI 216 (562)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 2233334444555555555555444443443
No 26
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.53 E-value=2 Score=48.54 Aligned_cols=69 Identities=4% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHHHHHHHHhh
Q 015189 326 GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-----SSMVALPPAMSAVIMNIMGSTLGFFWR 395 (411)
Q Consensus 326 ~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~-----~p~~alp~~i~~l~q~i~~~~~a~~~~ 395 (411)
-+..+++.++.+|.+.+++.++++....|- ...+.++..... +.....-+++..+...+.+.++..+|+
T Consensus 364 K~~g~~l~a~~~g~~~~eal~lG~lm~~kG-~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 364 KIMGTIIIAFFYTMPFREGITLGFLMNTKG-LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccc-HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 345567777889999999999888776664 455545443222 122222122222345556666665544
No 27
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.47 E-value=0.22 Score=44.54 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-H
Q 015189 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V 183 (411)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v 183 (411)
....+..++-...|++.+.+++++.. |.....+...+....+.=..++.+.+..+.|... .+++++|+|.... .
T Consensus 48 ~~~~~qviiG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~ 122 (156)
T TIGR03082 48 LLALAQVVIGILIGSRFTREVLAELK-RLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAA 122 (156)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHH
Confidence 44567777778899999999998874 4444444433444444444566677777776543 3688999999877 4
Q ss_pred HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015189 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKI 216 (411)
Q Consensus 184 ~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~l 216 (411)
.+...|.|...-.....+=.++-.+..|++..+
T Consensus 123 ~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 123 LAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678889999999999988888888888887653
No 28
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=96.12 E-value=0.19 Score=50.07 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHH-hhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCc
Q 015189 320 LLLHFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSS 370 (411)
Q Consensus 320 ~ll~~~~f~~G~~l~r-~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p 370 (411)
.......+.++|.++| .++.|++++.+..+.++..|+ -+|++++...||+.
T Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~ 127 (321)
T TIGR00946 75 WGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEE 127 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhccc
Confidence 3344567888999998 778898999999999999998 58999999999753
No 29
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.67 E-value=4.8 Score=45.05 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhhcccccchhh-----hccchhHHHHHHHHHHHHcccCChHHHHHH
Q 015189 75 SLYPLYVTVGGVIACLKPSAFGWFV-----QRGPASYSLSLGLIMLAMGLTLELKDLISL 129 (411)
Q Consensus 75 ~~~p~~i~~~~llgl~~P~~~~~~~-----~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~ 129 (411)
....+.+++|+++|...-+.+.... .......-+.+.+.+|..|++++.+.+++.
T Consensus 39 s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~ 98 (810)
T TIGR00844 39 GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKH 98 (810)
T ss_pred cHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456667777777754322222111 000001236888999999999999988754
No 30
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.31 E-value=3 Score=40.32 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHH--H
Q 015189 76 LYPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPT--S 151 (411)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~~~--~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pl--l 151 (411)
....-++.|+++| |..+....+. ........+.++||..|+++|.+++++.. | +....+. .. .+.|. +
T Consensus 18 ~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~-~--~~~~~~~-~~-~~~~~~~~ 89 (273)
T TIGR00932 18 SVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLR-K--AAFGVGV-LQ-VLVPGVLL 89 (273)
T ss_pred HHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-H--HHHHHHH-HH-HHHHHHHH
Confidence 3455566677776 4333222110 01123578889999999999999998764 2 2233322 22 23452 2
Q ss_pred HHHHHHHcCCChHHHHHHHHHccCchhhHHH---HHHHH--cCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccC
Q 015189 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASN---VVTLI--ARGD-VPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD 225 (411)
Q Consensus 152 ~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~---v~t~~--a~Gd-~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd 225 (411)
++...+.++.+.. .++++-++...+..+. ++..+ .+.+ ..+......++-+++++..-+......+.. .+
T Consensus 90 ~~~~~~~~~~~~~--~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~ 165 (273)
T TIGR00932 90 GLLLGHLLGLALG--AAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TE 165 (273)
T ss_pred HHHHHHHHCCCHH--HHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cc
Confidence 3445566665432 3333333333222222 23222 2322 334566667788888887766665543321 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 015189 226 AVKLSISTLQIVVAPVLLGSYMQSAFPAAVKV 257 (411)
Q Consensus 226 ~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~ 257 (411)
...........+..-+..+...|+..+...++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (273)
T TIGR00932 166 HVALALLLLKVFLAFLLLVLLGRWLLRPVLRL 197 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233333444555555554443333
No 31
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.83 E-value=0.26 Score=46.84 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=70.3
Q ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL 208 (411)
Q Consensus 129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~ 208 (411)
.+||+++.+..++.+--++--..++.+++.++++++....+.-=+. +++.+.-.++..|||.++++..+.++-+++..
T Consensus 82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~ 159 (226)
T TIGR00659 82 QIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTV 159 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3346677788887776666667888999999999988776654443 45555568999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015189 209 FTPLLTKIL 217 (411)
Q Consensus 209 ~~Pl~l~ll 217 (411)
+-|.++.++
T Consensus 160 ~g~~ll~~~ 168 (226)
T TIGR00659 160 FGPMVLRYF 168 (226)
T ss_pred HHHHHHHHc
Confidence 999998877
No 32
>PRK10711 hypothetical protein; Provisional
Probab=94.55 E-value=0.51 Score=45.03 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=72.7
Q ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL 208 (411)
Q Consensus 129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~ 208 (411)
.+||+++.+..++..--++--..++.+++.+++|++....+.==+. +++.+.-.++..||+.++++..+.++-+++.+
T Consensus 83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~ 160 (231)
T PRK10711 83 QIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILGAV 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3346778888888887777778899999999999998887765544 55555668999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015189 209 FTPLLTKIL 217 (411)
Q Consensus 209 ~~Pl~l~ll 217 (411)
+-|.++.++
T Consensus 161 ~g~~llk~~ 169 (231)
T PRK10711 161 FGHTLLNAM 169 (231)
T ss_pred HHHHHHHHc
Confidence 999999876
No 33
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=94.55 E-value=0.47 Score=44.84 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=71.7
Q ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHH
Q 015189 130 FMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLF 209 (411)
Q Consensus 130 ~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~ 209 (411)
++|+++.+..++...-++.-+..+.+++.+++|++....+.-=+. +++.+.-.++..|||.++.+..+.++-+++..+
T Consensus 73 l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 73 LKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIPSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHh
Confidence 346778888888887777777888999999999998887765544 555555689999999999999999999999999
Q ss_pred HHHHHHHH
Q 015189 210 TPLLTKIL 217 (411)
Q Consensus 210 ~Pl~l~ll 217 (411)
-|.++.++
T Consensus 151 g~~llk~~ 158 (215)
T PF04172_consen 151 GPPLLKLL 158 (215)
T ss_pred HHHHHhHc
Confidence 99998876
No 34
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=94.42 E-value=6.5 Score=39.90 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhCcccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015189 203 TLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVK 256 (411)
Q Consensus 203 tlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~ 256 (411)
.+.+++++|+-... .|-...+|+..++.+++-++++-++++..+++.-.+..+
T Consensus 144 il~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~~mIk 196 (372)
T PRK15086 144 VLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALGLKFIPEKMIK 196 (372)
T ss_pred HHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554321 122246888899999999999999999988876544433
No 35
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.40 E-value=1.3 Score=44.30 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-H
Q 015189 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V 183 (411)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v 183 (411)
....+..++=...|++.+.+++++.. |.........+.-....=+.++.+.++.+.| ..-.+++.+|+|.... .
T Consensus 205 l~~~aqv~iG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~----~~t~~La~aPGGl~eM~l 279 (318)
T PF05145_consen 205 LVNAAQVLIGASIGSRFTRETLRELR-RLLPPALLSTLLLLALCALFAWLLSRLTGID----FLTALLATAPGGLAEMAL 279 (318)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHhCCccHHHHHH
Confidence 44555566667799999999998764 3223233333334444445567777777766 4556889999999988 5
Q ss_pred HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (411)
Q Consensus 184 ~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~ 218 (411)
.+...|.|.++...+..+=.+.-.++.|.+..++.
T Consensus 280 ~A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 280 IALALGADVAFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999998888899999888764
No 36
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=94.36 E-value=0.57 Score=44.72 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=72.0
Q ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL 208 (411)
Q Consensus 129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~ 208 (411)
.+||+++.+..++.+--++--+.++.+++++++|++....+.==+. +++.+.-.++..||+.++++..+.++-+++.+
T Consensus 88 ~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~Gai 165 (232)
T PRK04288 88 VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3346678888888887777778899999999999987776654444 55555668999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015189 209 FTPLLTKIL 217 (411)
Q Consensus 209 ~~Pl~l~ll 217 (411)
+-|.++.++
T Consensus 166 ~g~~llk~~ 174 (232)
T PRK04288 166 LGAKFLKLF 174 (232)
T ss_pred HHHHHHHHc
Confidence 999999876
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.35 E-value=0.51 Score=46.89 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH---ccCchhhHHH-
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILL---SCCPGGTASN- 182 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~---a~~P~~~~s~- 182 (411)
...+.+..|..|.+++++++.+.- ...+..++++-. +.=+.++.+.+.++.|... |..+- +.+=|+.++.
T Consensus 195 ~f~I~f~~f~LG~~lnl~~I~~~G---~~GIlL~v~vv~-~t~~~~~~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 195 PLLIPFFAFALGAGINLSMLLQAG---LAGILLGVLVTI-VTGFFNIFADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred eEeHHHHHHHhcCCeeHHHHHHhC---hHHHHHHHHHHH-HHHHHHHHHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 448888889999999999997652 455666555433 3335677777888876654 33332 1111222222
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (411)
Q Consensus 183 v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~ 218 (411)
-..-..+...+.++..+..+.+...++.|++..++.
T Consensus 269 AadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 269 AADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333445666666677777777777777766654
No 38
>COG0679 Predicted permeases [General function prediction only]
Probab=94.24 E-value=1.9 Score=42.86 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHH-hhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 015189 323 HFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLG 391 (411)
Q Consensus 323 ~~~~f~~G~~l~r-~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a 391 (411)
....+..++++.| .++.+++++.......+..|+ -++..++...||+.-.+... +|...+++.-..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~-i~~~~~~~~~~~~g 143 (311)
T COG0679 74 TLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAV-IFLIIGLFLMFTLG 143 (311)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHH-HHHHHHHHHHHHHH
Confidence 3444444555554 455566667778888888898 58899999999866555554 45555554444443
No 39
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.15 E-value=6.8 Score=39.04 Aligned_cols=137 Identities=17% Similarity=0.128 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHh-hcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 015189 75 SLYPLYVTVGGVIAC-LKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV 153 (411)
Q Consensus 75 ~~~p~~i~~~~llgl-~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~ 153 (411)
....+++++|++++- .+. .-.++.+-..+.....+-.-...+|.+++..|+.+.- ++.+..... .....=.+++
T Consensus 27 ~~~~~AillG~~i~n~~~~-~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G---~~~~~~~~~-~v~~~~~~~~ 101 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFFG-LPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG---WKGLLIIII-VVILTFLLTY 101 (305)
T ss_pred cHHHHHHHHHHHHhhhccC-CcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC---ccHHHHHHH-HHHHHHHHHH
Confidence 346778888888883 321 1122221001112356777778899999999998753 444443333 3334445677
Q ss_pred HHH-HHcCCChHHHHHHHHHccCchhhHHHHH----HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 154 IVS-KFLGLPPALSVGLILLSCCPGGTASNVV----TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 154 ~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~----t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
.++ +.+++|++ ..-++-.+.+=||.++..- .+--+.|.++++..+.+-+.++++..|..-..+
T Consensus 102 ~lg~r~~~l~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 102 WLGRRLFGLDRK-LAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHHhCCCHH-HHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 777 99999865 3334445555566655532 223356789999999999999999999997655
No 40
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.04 E-value=11 Score=37.95 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 015189 77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS 156 (411)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~ 156 (411)
+.+++++|+++|. +++.......-..+.-..++-.-....|.++++.|+.+.- .+.+. ...+.....=++++.++
T Consensus 40 l~lAIllGi~l~~-l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G---~~~v~-~~~~~l~~t~~~~~~lg 114 (334)
T COG2855 40 LTLAILLGILLGI-LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG---GSGVL-IIAITLSSTFLFAYFLG 114 (334)
T ss_pred HHHHHHHHHHHhc-cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC---ccHHH-HHHHHHHHHHHHHHHHH
Confidence 6778888888883 3333322221011233457777778899999999998753 33332 22334444446788899
Q ss_pred HHcCCChHHHHHHHHHccCchhhHHHHHH----HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 157 KFLGLPPALSVGLILLSCCPGGTASNVVT----LIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 157 ~~~~l~~~~~~GliL~a~~P~~~~s~v~t----~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
+.+++|...+ -++-+++.=||.++..-+ .--+-|++.++..+.+-..++++..|....++
T Consensus 115 ~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 115 KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 9999987543 345555666776655432 23345788888888888888999999987765
No 41
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=92.13 E-value=7.9 Score=39.24 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHH
Q 015189 104 ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV 183 (411)
Q Consensus 104 ~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v 183 (411)
|...++-.++....|++.+...+++.. |--....+..+..+.+.=.+++.+.+..+.|.. ..+++.+|+|.....
T Consensus 237 wl~~va~~~iG~~IG~~f~~~~l~~~~-r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma 311 (352)
T COG3180 237 WLLAVAQALIGALIGSRFDRSILREAK-RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMA 311 (352)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHhH-hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHH
Confidence 444556666777799999999998763 322334444444555555667777777676643 457899999998875
Q ss_pred -HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189 184 -VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (411)
Q Consensus 184 -~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~ 218 (411)
.+...+-|.++-.++..+=-++-.++.|.+.+.+.
T Consensus 312 ~~A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 312 AIAAALGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555569999999999888877777888877654
No 42
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.02 E-value=2.1 Score=40.60 Aligned_cols=88 Identities=27% Similarity=0.345 Sum_probs=69.7
Q ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL 208 (411)
Q Consensus 129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~ 208 (411)
.+||+|+.+..+.++--++-=..++++++.|+++++....++==+. +++.+.-.++..||-.++.+..+.++-+++.+
T Consensus 85 ~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gav 162 (230)
T COG1346 85 LIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVILTGILGAV 162 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3357888898888876666667899999999999987665542222 34444457999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 015189 209 FTPLLTKILA 218 (411)
Q Consensus 209 ~~Pl~l~ll~ 218 (411)
+-|.++..+.
T Consensus 163 lg~~llk~~~ 172 (230)
T COG1346 163 LGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHhc
Confidence 9999988773
No 43
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=92.01 E-value=6.5 Score=39.69 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHccCchhhHHHHH-H
Q 015189 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVV-T 185 (411)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~-t 185 (411)
..+-.-...+|.+++++|+.+.- ++.+......-.... ++++.++ +.+++|++. .-++-.+++=||.++.+- .
T Consensus 66 ~lLr~gIVLlG~~l~~~~i~~~G---~~~l~~~~~~v~~~~-~~~~~~g~k~l~l~~~~-~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 66 FLLRIGITLYGFRLTFPYIADVG---PNEIVADTLILTSTF-FLTVFLGSSRLKLDKQM-SILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHHHHHHHHHCccccHHHHHHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhH-HHHHHcchhHHHHHHHHHhc
Confidence 46777778899999999997653 344433222222222 3445566 788887653 223334444455554432 2
Q ss_pred ---HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189 186 ---LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (411)
Q Consensus 186 ---~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~ 218 (411)
+--+-|.++++..+.+-+.++++..|.+-.++.
T Consensus 141 ~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 141 PVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred cccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 223457889999999999999999999977664
No 44
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.53 E-value=28 Score=34.76 Aligned_cols=132 Identities=21% Similarity=0.375 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 015189 80 YVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159 (411)
Q Consensus 80 ~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~ 159 (411)
.++.|+.+|-+-|+...- ..+.|-.....+.++||+.|+..+.+|+... | ... +-+-+.|..+.-+.++++.+..
T Consensus 36 yL~AGv~~gpftpGFvad-~~La~~LAelGViLLmFgvGLhfslkdLLav--k-~iA-ipgAl~qia~at~lg~gL~~~l 110 (408)
T COG4651 36 YLLAGVLAGPFTPGFVAD-QTLAPELAELGVILLMFGVGLHFSLKDLLAV--K-AIA-IPGALAQIALATLLGMGLSSLL 110 (408)
T ss_pred HHHHHHhcCCCCCCcccc-hhHHHHHHHhhHHHHHHhcchheeHHHHhhH--H-HHh-cchHHHHHHHHHHHHhHHHHHc
Confidence 344455555444543211 1111223456888999999999999999764 1 222 3445668888888899999987
Q ss_pred CCChHHHHHHHHHccCchhhHHHHH-HHHc-------CCChhhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015189 160 GLPPALSVGLILLSCCPGGTASNVV-TLIA-------RGDVPLSI-VMTMCTTLGAVLFTPLLTKILA 218 (411)
Q Consensus 160 ~l~~~~~~GliL~a~~P~~~~s~v~-t~~a-------~Gd~~la~-~lt~~stlls~~~~Pl~l~ll~ 218 (411)
+.+ .-.|++.--|...+..+... +..- +|..+..- .+-=+..++..+..|..-..+.
T Consensus 111 gws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 111 GWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred CCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 643 23333333343344333332 2222 33333221 2223445566667777766664
No 45
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=88.08 E-value=0.46 Score=33.58 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCccC
Q 015189 385 IMGSTLGFFWRYIDPSDSKTSPKTVD 410 (411)
Q Consensus 385 i~~~~~a~~~~~~~~~~~~~~~~~~~ 410 (411)
+.-+.+|.+||||..++-++||+++|
T Consensus 6 fllstlamlwrrrfanrvqpeps~vd 31 (54)
T PF15201_consen 6 FLLSTLAMLWRRRFANRVQPEPSGVD 31 (54)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 34567889999999999999999987
No 46
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.70 E-value=11 Score=37.58 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHH-HhhCCCccchhhhhhhhhcchhHHHHHHHH
Q 015189 319 VLLLHFAGFFVGYLSA-AICGFKEPQRRAISIEVGMQNSSLGVVLAT 364 (411)
Q Consensus 319 ~~ll~~~~f~~G~~l~-r~lg~~~~~~~al~~~~g~rN~~Lai~la~ 364 (411)
..+.....+.++|+++ |++|+|++.+.-++-.++.-=.+-.++++.
T Consensus 89 ~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~ 135 (305)
T PF03601_consen 89 IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP 135 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc
Confidence 3444567788899999 999999887776666555554444444443
No 47
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=84.60 E-value=48 Score=33.49 Aligned_cols=100 Identities=22% Similarity=0.384 Sum_probs=65.5
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCC
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGD 191 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd 191 (411)
+++++.|.-.|+. ..+ .|||.++.|...|+.+. .++..+..++.++..+..+-+.+.+=+.++-++-..++ -|
T Consensus 74 LIF~GIGAmtDFg---pll-anP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~ 146 (360)
T PF03977_consen 74 LIFMGIGAMTDFG---PLL-ANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PH 146 (360)
T ss_pred HHHHHHhHHHhhH---HHH-hCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HH
Confidence 4456788776655 445 68999999999999876 56777777889998998888888876555544433333 33
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 192 VPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 192 ~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
.--.++..+-|- -+.++.-|-.+.++.
T Consensus 147 LlgpIaVaAYsYMaLvPiiqPpimklLt 174 (360)
T PF03977_consen 147 LLGPIAVAAYSYMALVPIIQPPIMKLLT 174 (360)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence 333333333332 245556677777775
No 48
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=84.35 E-value=3.5 Score=41.46 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChH---HHHHHHHHccCchhhHHH-
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA---LSVGLILLSCCPGGTASN- 182 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~---~~~GliL~a~~P~~~~s~- 182 (411)
.+.+.+..|..|.+++.+++.+. .+..++++.. +.++.+...+...++++.++. .+.+. -.+.+=|+.++.
T Consensus 202 ~~lLp~~~~~lG~~l~lq~i~~~---G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~g~~g~a~~t-taG~aic~pAAva 276 (326)
T PRK05274 202 PVLIPFFAFALGNGIDLGTIITA---GLSGILLGVA-VVAVTGIPLYLADRLIGGGNGVAGAAAGS-TAGNAVATPAAVA 276 (326)
T ss_pred EEEHHHHHHHHhcceeHhHHHhc---CCcchhhhhh-HhhccchhhHhHhheeecCCCcchHHHHH-HHHHHHHHHHHHH
Confidence 34777778888888888877653 3444544333 455566667777788855443 11111 111111122111
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 183 v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
-..-..+...+-++..+....+++.++.|+...++
T Consensus 277 a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~ 311 (326)
T PRK05274 277 AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW 311 (326)
T ss_pred hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222244555555555555556666666666554
No 49
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=83.83 E-value=54 Score=33.51 Aligned_cols=100 Identities=15% Similarity=0.243 Sum_probs=62.4
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILF-GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG 190 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~-~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G 190 (411)
+++++.|.-.|+.- .+ .|||..+. |...|+.+. ..+..+..+|.+...+..+-+.+.+=+.++-++-+.++ -
T Consensus 110 LIFlGIGAMtDFgp---ll-anP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLA-p 182 (399)
T TIGR03136 110 ILFFGIGAMSDISF---IL-ARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILA-K 182 (399)
T ss_pred HHHHhccHHhcchH---HH-hChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhh-h
Confidence 45667887776554 44 68998888 789998876 56666677888888888888888776555444433333 2
Q ss_pred ChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 191 DVPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 191 d~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
|.--+++..+-|- -+.++.-|-.+.++.
T Consensus 183 ~Llg~IaVAAYsYMaLVPiiqPpimklLt 211 (399)
T TIGR03136 183 DLFVPISIIAYLYLSLTYAGYPYLIKLLV 211 (399)
T ss_pred HhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 2222222222221 234555676777765
No 50
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=83.50 E-value=57 Score=33.50 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHH----HHHHHHHHHHHHHHHH-cCCChHHHHHHHHHccCchhhH
Q 015189 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA----AQYTIMPTSGVIVSKF-LGLPPALSVGLILLSCCPGGTA 180 (411)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~----~~~vl~Pll~~~l~~~-~~l~~~~~~GliL~a~~P~~~~ 180 (411)
..+.++++++.+-++.|.+++.+.- +| .+..++ ...+-.+ +++.+..- ++ +......-.+.+. =.|.+
T Consensus 57 ~~~~vPlai~LlLl~~Dlr~i~~~g---~~-~l~~F~~~~~g~viG~~-va~~l~~~~l~-~~~wk~ag~l~gs-yiGGs 129 (378)
T PF05684_consen 57 WTYLVPLAIPLLLLSADLRRILRLG---GR-LLLAFLIGAVGTVIGAV-VAFLLFGGFLG-PEGWKIAGMLAGS-YIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhh---HH-HHHHHHHHHHHHHHHHH-HHHHHHhhccc-chHHHHHHHHHhc-ccCch
Confidence 3667777788888999988887653 23 222222 2222232 23333322 23 2333333334443 34444
Q ss_pred HH--HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 181 SN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 181 s~--v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
.| .+.+..+-|.++-..+.+..++.+.+-+.+++.+-
T Consensus 130 ~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~ 168 (378)
T PF05684_consen 130 VNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP 168 (378)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 46777888888888899999999988887776543
No 51
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=83.09 E-value=70 Score=34.24 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015189 77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (411)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (411)
....++.|+++|...-.......+ .......++.++|..|.+++.+++++..
T Consensus 25 ~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445556677777431110001111 1134578889999999999999998653
No 52
>PRK09903 putative transporter YfdV; Provisional
Probab=81.10 E-value=60 Score=32.08 Aligned_cols=248 Identities=15% Similarity=0.113 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHccCch-hhHHH
Q 015189 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSK-FLGLPPALSVGLILLSCCPG-GTASN 182 (411)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~-~~~l~~~~~~GliL~a~~P~-~~~s~ 182 (411)
.+.++++.++|....+.+.++.... ....... ...++..-++++.+.+ .++.+........+..+.+- |-...
T Consensus 40 v~~v~lPalif~s~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~ 114 (314)
T PRK09903 40 VLNYALPAALFVSITRANREMIFAD----TRLTLVS-LVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGF 114 (314)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhh----hhHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccH
Confidence 4578889899888887765554322 2223222 2233333355666654 44555433333333333332 22222
Q ss_pred -HHHHHcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHhCccc--cc--ChHHHHHHH-HHHHHHHHHHHHHHHHh---hh
Q 015189 183 -VVTLIARGDVPL-SIVMTMCTTLGAVLFTPLLTKILAGTYV--PV--DAVKLSIST-LQIVVAPVLLGSYMQSA---FP 252 (411)
Q Consensus 183 -v~t~~a~Gd~~l-a~~lt~~stlls~~~~Pl~l~ll~g~~v--~v--d~~~l~~~l-l~~vllPl~lG~~lr~~---~~ 252 (411)
+..... ||.+. ++...........+..+.....+....- +- ...+..+++ ---.++..++|+.++.. .|
T Consensus 115 Pl~~~~~-G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP 193 (314)
T PRK09903 115 AVLDPIY-GDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIP 193 (314)
T ss_pred HHHHHHc-CchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhchHHHHHHHHHHHHHcCCCCC
Confidence 344444 55432 2222222333455566666665532110 11 111222221 12355666777776654 35
Q ss_pred hhHHHhcccchhHHHHHH---HHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHH-HHHHHHHHHHHHHHH
Q 015189 253 AAVKVVTPFTPLFAVLMS---SLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG-VIILSVLLLHFAGFF 328 (411)
Q Consensus 253 ~~~~~i~~~~~~~s~~~l---~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~ll~~~~f~ 328 (411)
+..++ ....++.... ++.+...++.. .... + .+.+ ..+.=.++.+++.
T Consensus 194 ~~i~~---~l~~lg~~~~PlaL~~iG~~L~~~--~~~~---------~------------~~~~~~~~~Kli~~P~i~-- 245 (314)
T PRK09903 194 AAWDP---TFNLIAKANSGVAVFAAGLTLAAH--KFEF---------S------------AEIAYNTFLKLILMPLAL-- 245 (314)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhc--cccc---------c------------HHHHHHHHHHHHHHHHHH--
Confidence 44333 3333332221 11222222211 0100 0 0111 1111112223333
Q ss_pred HHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchH-HHHHHHHHHHHHHH
Q 015189 329 VGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVAL-PPAMSAVIMNIMGS 388 (411)
Q Consensus 329 ~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~al-p~~i~~l~q~i~~~ 388 (411)
+.+...++++.++..+..+++++--...+..+|..|-.|+..+- -+.+..+.-.+.-.
T Consensus 246 --~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlp 304 (314)
T PRK09903 246 --LLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAP 304 (314)
T ss_pred --HHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 33334468899999999999999999999999998877765332 23334444433333
No 53
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=80.34 E-value=2.1 Score=43.42 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccc---------hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHH
Q 015189 68 YLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGP---------ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSIL 138 (411)
Q Consensus 68 ~~l~~~~~~~p~~i~~~~llgl~~P~~~~~~~~~~p---------~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~ 138 (411)
..++.+-.=..++.+++.++|..-|-.-..++.-.| ..-...++.++...|-++-.+- ++.- .+.+.++
T Consensus 240 ~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~-~ss~-~~~~~ii 317 (408)
T KOG2722|consen 240 VILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGL-RSSA-LKTSVII 317 (408)
T ss_pred hhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCc-hhcc-cCceEEE
Confidence 344444444566777777777655432111110000 0113578888999898887653 3332 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHc------C-CChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHH
Q 015189 139 FGCAAQYTIMPTSGVIVSKFL------G-LPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211 (411)
Q Consensus 139 ~~l~~~~vl~Pll~~~l~~~~------~-l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~P 211 (411)
..++.+++++|+.+.++.... + .||-+...+++..++|++....-+|++.|--.+-+......+-.++.+-.-
T Consensus 318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt 397 (408)
T KOG2722|consen 318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT 397 (408)
T ss_pred EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 555669999999999887642 3 578899999999999999999999999888777777766666666655555
Q ss_pred HHHHH
Q 015189 212 LLTKI 216 (411)
Q Consensus 212 l~l~l 216 (411)
+|..+
T Consensus 398 vw~~~ 402 (408)
T KOG2722|consen 398 VWSVF 402 (408)
T ss_pred HHHHH
Confidence 54433
No 54
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=79.73 E-value=44 Score=33.62 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=66.3
Q ss_pred hhHHHHHHHHH-hhHHHHHHHHHHHHHhhccccc-chhhhc-cchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHH
Q 015189 63 KPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAF-GWFVQR-GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILF 139 (411)
Q Consensus 63 ~~~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~-~~~~~~-~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~ 139 (411)
+.+|.+.++.. .+---+.++.+.++|+...+.. ....+. .+ ...-.+.+.++-||+.- .+++++..+..++.+..
T Consensus 164 ~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~-lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~F 241 (327)
T PF05982_consen 164 GISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVD-LFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAF 241 (327)
T ss_pred cccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhc-cHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHH
Confidence 44577777766 3444555566667888885533 233322 11 23446666677777753 23344431112232332
Q ss_pred HHHHHHHHHHHH----HHHHHHHcCCChHHHHHHHHHccCchhhHHHHH--HHHcCCChhhHHHHH
Q 015189 140 GCAAQYTIMPTS----GVIVSKFLGLPPALSVGLILLSCCPGGTASNVV--TLIARGDVPLSIVMT 199 (411)
Q Consensus 140 ~l~~~~vl~Pll----~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~--t~~a~Gd~~la~~lt 199 (411)
=++||++ ++++++.++++..-+.-+..++++-.=.+++.- ..+=+.|..+.+.+.
T Consensus 242 -----gi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~S 302 (327)
T PF05982_consen 242 -----GILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTAS 302 (327)
T ss_pred -----HHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHH
Confidence 2467766 456667777766444444444332222222222 344466776666554
No 55
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.23 E-value=0.2 Score=50.69 Aligned_cols=138 Identities=19% Similarity=0.321 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHH--HHHHHH---Hc--CCChHHHHHHHHHccCch
Q 015189 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS--GVIVSK---FL--GLPPALSVGLILLSCCPG 177 (411)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll--~~~l~~---~~--~l~~~~~~GliL~a~~P~ 177 (411)
....++.++||..|.++|.+++++.. ++ .+..++. .+ +.|.+ ++.+.. .. +.......|.++....|.
T Consensus 51 l~~i~l~~llF~~G~~~d~~~l~~~~-~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~ 125 (380)
T PF00999_consen 51 LAEIGLAFLLFEAGLELDIKELRRNW-RR--ALALGLV-GF-LLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPA 125 (380)
T ss_dssp SHHHHS--SSHHHHTTGGGG------------------------------------------------TTHHHHTT--HH
T ss_pred HHHHHHHHHHHHHHHhhccccccccc-cc--ccccccc-ee-eehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccccc
Confidence 45789999999999999999998764 32 2222222 22 22222 333332 12 233445556655555555
Q ss_pred hhHHHHH-HHHcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccChHHHHHHHHHHHHHHHHHHHHHH
Q 015189 178 GTASNVV-TLIARGD-VPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQ 248 (411)
Q Consensus 178 ~~~s~v~-t~~a~Gd-~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~~lr 248 (411)
.....+- ....+++ .........++.+.+.+...+..... ++....+........+..+..=.++|...+
T Consensus 126 ~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
T PF00999_consen 126 IVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFG 197 (380)
T ss_dssp HHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------------------------------------
T ss_pred chhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccc
Confidence 5544432 2222333 44455667788888888877776665 333444544443333333333333343333
No 56
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=78.35 E-value=38 Score=28.13 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=44.9
Q ss_pred HHhh-CCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015189 334 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSP 406 (411)
Q Consensus 334 ~r~l-g~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~~~~~ 406 (411)
-|.. |.+-.| |.++.++=.-|....+++-...++++...=...++.++-.+..-.++++..|++..|+++|+
T Consensus 26 ~Rlv~GPt~~D-RivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~g~~~~~~~~~ 98 (100)
T PRK12657 26 FRLIKGPTTAD-RVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGGGHVFNGNNKR 98 (100)
T ss_pred HHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCcC
Confidence 3544 444555 56677765556655555556677666544344567777777777778888777766665543
No 57
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=77.26 E-value=39 Score=27.69 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=41.3
Q ss_pred HHhh-CCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015189 334 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 402 (411)
Q Consensus 334 ~r~l-g~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~ 402 (411)
.|.. |.+-.| |.++.++=.-|....+.+-..+++++...=...+|.++-.+..-.++++..|++..|+
T Consensus 22 ~Rli~GPt~~D-RvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~g~~~~~ 90 (94)
T PRK12600 22 IRVIKGPTLAD-RVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEKGKVIER 90 (94)
T ss_pred HHhhcCccHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 3544 455556 5556655555665556666667766654434456777777766777888776665554
No 58
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=77.03 E-value=1.1e+02 Score=33.02 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhc---ccc-cchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Q 015189 77 YPLYVTVGGVIACLK---PSA-FGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTS 151 (411)
Q Consensus 77 ~p~~i~~~~llgl~~---P~~-~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll 151 (411)
..+.+++|+++|... +.. ...+.+ .....+.++.++|-.|.+++.+++++.+ +.- ..-..|.+++.+++-..
T Consensus 38 s~llil~GlllG~i~~~~~~~~~~~l~~--~lf~~~~LPpIlFe~g~~l~~~~f~~n~-~~Il~lAv~Gvlit~~~ig~~ 114 (559)
T TIGR00840 38 SVLLIVYGLLVGGIIKASPHIDPPTLDS--SYFFLYLLPPIVLDAGYFMPQRNFFENL-GSILIFAVVGTLINAFVIGLS 114 (559)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777542 110 011221 1234679999999999999999998875 211 11233444555555555
Q ss_pred HHHHHH
Q 015189 152 GVIVSK 157 (411)
Q Consensus 152 ~~~l~~ 157 (411)
.+.+..
T Consensus 115 l~~~~~ 120 (559)
T TIGR00840 115 LYGICL 120 (559)
T ss_pred HHHHHh
Confidence 554443
No 59
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=76.56 E-value=89 Score=31.51 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=54.9
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHccCchhhHHHHHH
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL------PPALSVGLILLSCCPGGTASNVVT 185 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l------~~~~~~GliL~a~~P~~~~s~v~t 185 (411)
+++++.|.-.|+. ..+ .||+.++.|...|+.+. ..+..+..++. +...+..+-+.+.+=+.++-++-.
T Consensus 68 LIFlGIGAmtDFg---pll-anP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~ 141 (354)
T TIGR01109 68 LIFMGIGALTDFG---PLL-ANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSG 141 (354)
T ss_pred HHHHhccHHhhhH---HHH-hChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHh
Confidence 4456678776655 444 68999999999998876 45555555666 446666666666554443322222
Q ss_pred HHcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 186 LIARGDVPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 186 ~~a~Gd~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
.++ -|.--+++..+-|- -+.++.-|-.+.++.
T Consensus 142 ~la-p~Llg~IaVAAYsYMaLvPiiqPpimklLt 174 (354)
T TIGR01109 142 KLA-PELLAAIAVAAYSYMALVPIIQPPIMKALT 174 (354)
T ss_pred hhh-hHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 222 22222222222221 234445566666664
No 60
>PRK03818 putative transporter; Validated
Probab=75.26 E-value=20 Score=38.64 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHH
Q 015189 315 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVL 362 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~l 362 (411)
..+..++..+.+..+++.+.+.+|++... .+-.++-++-|+ +++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 93 LNLFAVLIVILGGLVTAILHKLFGIPLPV-MLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHhhccccccHHHHHHH
Confidence 34445666777788888888889998763 344444444444 455544
No 61
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.14 E-value=37 Score=37.18 Aligned_cols=103 Identities=26% Similarity=0.358 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHccCchhhHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~--~~~~GliL~a~~P~~~~s~v~ 184 (411)
...+++.+...|+++++..+.+ ++..++...+.-++.-++..++.++.++.+. ....|+.+ ++.|-.+.+.
T Consensus 271 ~lll~lFFi~vG~~id~~~l~~----~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L---~~~Gef~~vl 343 (621)
T PRK03562 271 GLLLGLFFIAVGMSIDFGTLLE----NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLL---GQGGEFAFVV 343 (621)
T ss_pred HHHHHHHHHHhhhhccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHH---hccccHHHHH
Confidence 4567777788999999877653 3444444444567777888888888888754 44455433 4455555554
Q ss_pred HHHc--CC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 185 TLIA--RG--DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 185 t~~a--~G--d~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
...+ .| |.+....++ +..+++.+++|++..++
T Consensus 344 ~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 344 FGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3332 22 344444444 35677888888876553
No 62
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=71.88 E-value=27 Score=34.80 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
....++++-|..|.+++.+++.+. -...+++++.+
T Consensus 199 ~~~lIpFf~FaLGaginl~~i~~a---Gl~GIlLGl~v 233 (314)
T TIGR00793 199 VQTLIPFFAFALGNTIDLGVIIQT---GLLGILLGVSV 233 (314)
T ss_pred CCeeeehhhhhhcCCCCHHHHHHh---CcchHHHHHHH
Confidence 345777778888888888777543 12345555543
No 63
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=71.55 E-value=1.4e+02 Score=31.33 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=31.0
Q ss_pred hhHHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015189 63 KPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (411)
Q Consensus 63 ~~~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (411)
++.++...+.+ .-..|+.++.|...|.+-|.-..... ...++.+..|. --+++++|+.+.+
T Consensus 207 ~~~~~~~~~a~~~l~~pviilggI~~Gi~TpTEAaava------~~yal~v~~~i-yr~l~~~~l~~~l 268 (425)
T PRK15060 207 REIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVA------AFYALFVAVVI-YREMTFSTLYHVL 268 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH------HHHHHHHHHHH-HcCcCHHHHHHHH
Confidence 34444444333 44566666666666666555332222 11222222222 2478899998887
No 64
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=71.48 E-value=86 Score=29.02 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 015189 323 HFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID 398 (411)
Q Consensus 323 ~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~ 398 (411)
-+.....|+..++.++.+.+| +++...|+-=-++.-++-+... +|+...-.....+..=+.+-+...+..|+.
T Consensus 66 IlGSllgg~l~~~ll~~~~~~--~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 66 ILGSLLGGLLASLLLGLSLKE--SLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred HHHHHHHHHHHHHHhcCCHHH--HHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566778888888777776 5555567777777777776666 466554444555666666666666666633
No 65
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=71.42 E-value=20 Score=35.82 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcccCChHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLIS 128 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~ 128 (411)
...++++-|..|.+++.+++.+
T Consensus 200 ~~lIPF~~f~lGa~inl~~i~~ 221 (314)
T PF03812_consen 200 PILIPFFGFALGAGINLSNIIK 221 (314)
T ss_pred CeeeehhhhhhcCCCCHHHHHH
Confidence 3455566666666666666544
No 66
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=70.54 E-value=1e+02 Score=29.47 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh--HHHHHHHHHhcCCcc-chHHHHHHHHHHHHHHHHHH
Q 015189 315 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSSM-VALPPAMSAVIMNIMGSTLG 391 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~--~Lai~la~~~f~~p~-~alp~~i~~l~q~i~~~~~a 391 (411)
++..+++=..++...+++++|++|.+++-.+++. -|.. +.|+-++...-+.|. .++-+++-+++-++.|..+-
T Consensus 93 I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~----PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~ll 168 (230)
T COG1346 93 ILAGVLVGSVVAIISGVLLAKLFGLSPELILSLL----PKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLL 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhc----ccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444467888899999999999887655543 3444 566667765555454 44555566666666666655
Q ss_pred HHhh
Q 015189 392 FFWR 395 (411)
Q Consensus 392 ~~~~ 395 (411)
+..|
T Consensus 169 k~~~ 172 (230)
T COG1346 169 KLLR 172 (230)
T ss_pred HHhc
Confidence 5554
No 67
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=69.14 E-value=99 Score=33.71 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHccCchhhHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPAL--SVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~--~~GliL~a~~P~~~~s~v~ 184 (411)
...+++.+...|++++++.+.. ++..+....+.-++.-++..++.++.++.+... ..|+. ..|.|-.+.+.
T Consensus 268 ~lll~lFFi~vGm~id~~~l~~----~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl 340 (601)
T PRK03659 268 GLLLGLFFISVGMALNLGVLYT----HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVL 340 (601)
T ss_pred HHHHHHHHHHHhhhccHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHH
Confidence 4577777788999999877653 344444444556677788888888888876543 34433 35666666654
Q ss_pred HHHc--CC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 185 TLIA--RG--DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 185 t~~a--~G--d~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
...+ .| |...... .....+++.+++|++..++
T Consensus 341 ~~~a~~~g~i~~~~~~~-lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 341 FSAASSQRLLQGDQMAL-LLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHHHHhCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 3322 22 2222222 2555667777888877653
No 68
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=68.19 E-value=1.1e+02 Score=33.17 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN 182 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~ 182 (411)
+..+.+-+|+.|++.-++=++. +||+. +..+.+++ -.++.=++++++.++|++|+..+.|++-=+..-+.....
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~-l~~~g~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~a 135 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFAS-LKKDGLREIILALV-FAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGT 135 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHH-HHhccHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHH
Confidence 5677778889999999886654 43443 33333333 333334667888899999999999998776655444333
No 69
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=66.41 E-value=1.6e+02 Score=30.12 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchh---hhhhhhhcchh-HHHHHHHHH-hcCC-ccchHHHHHHHH-HHHHHHHH
Q 015189 317 LSVLLLHFAGFFVGYLSAAICGFKEPQRR---AISIEVGMQNS-SLGVVLATA-HFTS-SMVALPPAMSAV-IMNIMGST 389 (411)
Q Consensus 317 l~~~ll~~~~f~~G~~l~r~lg~~~~~~~---al~~~~g~rN~-~Lai~la~~-~f~~-p~~alp~~i~~l-~q~i~~~~ 389 (411)
..+..+...+..+|..++..++.++.--. +++++-|.-+. +.|-..... -+++ ..+++..+-.++ .-.++|..
T Consensus 98 ~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgp 177 (368)
T PF03616_consen 98 LIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGP 177 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566788888888888888776543 34665444333 233233322 2222 234454444444 45677888
Q ss_pred HHHHhhccCCCC
Q 015189 390 LGFFWRYIDPSD 401 (411)
Q Consensus 390 ~a~~~~~~~~~~ 401 (411)
++++.-||.+.+
T Consensus 178 i~~~lirk~~~~ 189 (368)
T PF03616_consen 178 IANWLIRKGKLK 189 (368)
T ss_pred HHHHHHHcCCCC
Confidence 888776666533
No 70
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=66.20 E-value=1.6e+02 Score=30.23 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHccCchhhHHHHHH
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL------GLPPALSVGLILLSCCPGGTASNVVT 185 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~------~l~~~~~~GliL~a~~P~~~~s~v~t 185 (411)
+++++.|.-.|+.- .+ .|||.++.|...|+.+.- .+..+..+ +.+...+..+-+.+.+=+.++-++-.
T Consensus 139 LIF~GIGAMtDFgp---Ll-anP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15477 139 VIFMGVGAMTDFGP---LL-ANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchH---Hh-hCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 34667787766554 44 689999999999988763 33333333 56777777777777665444433333
Q ss_pred HHcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 186 LIARGDVPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 186 ~~a~Gd~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
.++ -|.--+++..+-|- -+-++.-|-.+.++.
T Consensus 213 kLA-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15477 213 KLA-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred hhh-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 322 22222222222221 234445566666664
No 71
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=66.00 E-value=1.7e+02 Score=30.21 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHccCchhhHHHHHH
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL------GLPPALSVGLILLSCCPGGTASNVVT 185 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~------~l~~~~~~GliL~a~~P~~~~s~v~t 185 (411)
+++++.|.-.|+.- .+ .|||.++.|...|+.+.- .+..+..+ +.+...+..+-+.+.+=+.++-++-.
T Consensus 139 LIF~GIGAMtDFgp---Ll-anP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15476 139 VIFMGVGAMTDFGP---LL-ANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchH---Hh-hCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 34567787766554 44 689999999999988763 33333333 56777777777777665444433333
Q ss_pred HHcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 186 LIARGDVPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 186 ~~a~Gd~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
.++ -|.--+++..+-|- -+-++.-|-.+.++.
T Consensus 213 kLA-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15476 213 KLA-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred hhh-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 322 22222222222221 234445566666664
No 72
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=65.71 E-value=1.1e+02 Score=30.89 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHH-HhhCCCccchhhhhhhhhcchhHHHHHHH
Q 015189 321 LLHFAGFFVGYLSA-AICGFKEPQRRAISIEVGMQNSSLGVVLA 363 (411)
Q Consensus 321 ll~~~~f~~G~~l~-r~lg~~~~~~~al~~~~g~rN~~Lai~la 363 (411)
......+.++|+++ |++|+|++.+.-++-.++.-=.+-.++.+
T Consensus 97 ~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 97 LILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence 33456677888998 78999988766665555444433333333
No 73
>PRK04972 putative transporter; Provisional
Probab=65.57 E-value=56 Score=35.37 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHHH
Q 015189 314 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLA 363 (411)
Q Consensus 314 ~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~la 363 (411)
...+..++.++++..+++.+++.+|++... .+-.++-++-|+ +++.+.-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 91 NYLMLALVMVGSALVIALGLGKLFGWDIGL-TAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHhhccccCcHHHHHHHH
Confidence 344455677788888899999999998664 444555555555 4555544
No 74
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=65.26 E-value=1.7e+02 Score=30.11 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=56.0
Q ss_pred HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHc------CCChHHHHHHHHHccCchhhHHHHHH
Q 015189 112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL------GLPPALSVGLILLSCCPGGTASNVVT 185 (411)
Q Consensus 112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~------~l~~~~~~GliL~a~~P~~~~s~v~t 185 (411)
+++++.|.-.|+.- .+ .|||.++.|...|+.+.- .+..+..+ +.+...+..+-+.+.+=+.++-++-.
T Consensus 139 LIF~GIGAMtDFgp---Ll-anP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15475 139 VIFMGVGAMTDFGP---LL-ANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred HHHHhccHHhcchH---Hh-hCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 34567777766554 44 689999999999988763 33333333 56777777777777665444433333
Q ss_pred HHcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 186 LIARGDVPLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 186 ~~a~Gd~~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
.++ -|.--+++..+-|- -+-++.-|-.+.++.
T Consensus 213 kLA-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15475 213 KLA-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred hhh-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 322 22222222222221 234455566666664
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=64.73 E-value=1.2e+02 Score=28.09 Aligned_cols=128 Identities=19% Similarity=0.280 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHH-HHHHHH-cCchHHHHHHHHHHHHHHH-HHHHHH
Q 015189 80 YVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKD-LISLFM-QRPLSILFGCAAQYTIMPT-SGVIVS 156 (411)
Q Consensus 80 ~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~-l~~~~~-~~p~~l~~~l~~~~vl~Pl-l~~~l~ 156 (411)
.+++|.++|+........... ..++.+.+++|.+|+++..++ ..+.++ -++|.+.+.+.. ++--+ .++...
T Consensus 4 ~li~Gi~lG~~~~~~~~~~~~----~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~ 77 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLIDK----ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLAS 77 (191)
T ss_pred eHHHHHHHHHHhccccccccc----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 467888899888765333222 567899999999999987652 222222 234444333322 22222 244455
Q ss_pred HHcCCChHHHHHHHHHccCchhhHHHHH-HHHcCCChhhHHHHHHHH---HHHHHHHHHHHHHHH
Q 015189 157 KFLGLPPALSVGLILLSCCPGGTASNVV-TLIARGDVPLSIVMTMCT---TLGAVLFTPLLTKIL 217 (411)
Q Consensus 157 ~~~~l~~~~~~GliL~a~~P~~~~s~v~-t~~a~Gd~~la~~lt~~s---tlls~~~~Pl~l~ll 217 (411)
.+++.+ ...++.+-+-.-==+.|.++ ++. +|.++....-..+ =+++.+.+|++...+
T Consensus 78 ~ll~~~--~~~~lav~sG~GwYSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 78 LLLGLS--LKESLAVASGFGWYSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred HHhcCC--HHHHHHHHccCcHHHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556554 44444443332222233443 333 3444444333222 257889999998843
No 76
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=64.07 E-value=1e+02 Score=35.06 Aligned_cols=131 Identities=16% Similarity=0.088 Sum_probs=62.6
Q ss_pred HHHHhhccccc--chhh-hccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015189 85 GVIACLKPSAF--GWFV-QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL 161 (411)
Q Consensus 85 ~llgl~~P~~~--~~~~-~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l 161 (411)
.++|+..|+.- ..+. ...+......+++.+...|++++...+... ..+..+....++.++.--+.+++.++.++.
T Consensus 300 FlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~--~~~~~~~~liv~a~~gK~~g~~l~a~~~g~ 377 (832)
T PLN03159 300 FVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGP--ATWGLLVLVIIMASAGKIMGTIIIAFFYTM 377 (832)
T ss_pred HHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677888621 1111 111112346777778889999998765321 011111111122233333445556667777
Q ss_pred ChHHHHHHHHHccCchhhHHHHH-HHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189 162 PPALSVGLILLSCCPGGTASNVV-TLIARG--DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (411)
Q Consensus 162 ~~~~~~GliL~a~~P~~~~s~v~-t~~a~G--d~~la~~lt~~stlls~~~~Pl~l~ll 217 (411)
+...+..+-+...+-+...-.+. .....| |.+.-..++....+.+.++.|++..++
T Consensus 378 ~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 378 PFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 65544444444444343322222 122233 233333344444566777888877665
No 77
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=60.21 E-value=1.3e+02 Score=27.18 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhhhhhhhhcchhHHHHHHHHHh
Q 015189 314 VIILSVLLLHFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNSSLGVVLATAH 366 (411)
Q Consensus 314 ~i~l~~~ll~~~~f~~G~~l~r-~lg~~~~~~~al~~~~g~rN~~Lai~la~~~ 366 (411)
...+..++...++..++++++| .+|+|+.+ +...-+|.++.+-++.-|...
T Consensus 85 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 85 KLLLLGVIITLVPLLIALVIGRYLFKLNPGI--AAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHccccCcHHHHHHHHh
Confidence 4555667778888999999998 88887554 444555666665555555554
No 78
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=58.96 E-value=1.7e+02 Score=28.02 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhh
Q 015189 315 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVG 352 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g 352 (411)
....+++--++|..+|..+-|++|.+++..|-+++.++
T Consensus 152 tA~~ViitGi~Gai~g~~llk~~~I~~~~a~GlalG~a 189 (232)
T PRK04288 152 TSFAVIFNAVIIYALGAKFLKLFRIKNPIAKGLALGTS 189 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHH
Confidence 34444555578888999998998887666666555443
No 79
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=58.87 E-value=1.5e+02 Score=27.25 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccChHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHH
Q 015189 191 DVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL--QIVVAPVLLGSYMQSAFPAAVK 256 (411)
Q Consensus 191 d~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll--~~vllPl~lG~~lr~~~~~~~~ 256 (411)
|.........++.+++.++.|+....+..+ +.....+..++. ...+.-..++..+.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~ 69 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD 69 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 344556667788888999999988877532 233333443332 2233345556666666555443
No 80
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=58.86 E-value=2.5e+02 Score=29.81 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTL 186 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~ 186 (411)
+.++++++|-.|++.+.+.++... .| .+..+.+--.+-.-+.+..-.+++++ ++..|+++=+..-.+.++.||.-
T Consensus 65 ~lALaiILfdgG~~T~lss~r~a~--~p-alsLATlGVl~Ts~Ltg~aA~~ll~l--~wle~~LiGAiVgSTDAAAVF~l 139 (574)
T COG3263 65 NLALAIILFDGGFGTQLSSFRVAA--GP-ALSLATLGVLITSGLTGVAAAYLLNL--DWLEGLLIGAIVGSTDAAAVFSL 139 (574)
T ss_pred HHHHHHHhhcCccCCcHHHHHHHh--hh-hHHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHhhccccHHHHHHH
Confidence 678999999999999999998875 23 33333322222222334444455554 68899999999999999999998
Q ss_pred HcCCChhhHHHHHH-----HHHHHHHHHHHHHHHHHhCcccccChHH---HHHHHHHHHHHHHHHHHHHHHh
Q 015189 187 IARGDVPLSIVMTM-----CTTLGAVLFTPLLTKILAGTYVPVDAVK---LSISTLQIVVAPVLLGSYMQSA 250 (411)
Q Consensus 187 ~a~Gd~~la~~lt~-----~stlls~~~~Pl~l~ll~g~~v~vd~~~---l~~~ll~~vllPl~lG~~lr~~ 250 (411)
+.+-|..--+..|. -+--.+++++=-++.+..+.....|..- ...++..-+++=+.-|.+..+.
T Consensus 140 L~~~nl~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~ 211 (574)
T COG3263 140 LGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQL 211 (574)
T ss_pred HccCChhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 85555443333221 1122344444334444444333455432 2234444444444444444433
No 81
>PRK04972 putative transporter; Provisional
Probab=58.74 E-value=2.7e+02 Score=30.19 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~ 184 (411)
...+.+-+++.|++.-++=+. .++++. +....+.+ -.++.-++++.+.+++++++..+.|++-=+..-++.....-
T Consensus 63 ~~gl~lF~~~vG~~~Gp~F~~-~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~ 139 (558)
T PRK04972 63 NLGFMLFIFCVGVEAGPNFFS-IFFRDGKNYLMLALV-MVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAG 139 (558)
T ss_pred HHHHHHHHHHHhhhhhHHHHH-HHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHH
Confidence 566677777888888777554 443432 33333333 22233355777888899999999998876655555444443
No 82
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=58.48 E-value=1.6e+02 Score=27.58 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCc--------ccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhH
Q 015189 194 LSIVMTMCTTLGAVLFTPLLTKILAGT--------YVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLF 265 (411)
Q Consensus 194 la~~lt~~stlls~~~~Pl~l~ll~g~--------~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~ 265 (411)
.+...+.+.++.+++.-++.-.++... +.+.++..+..-+..+=.+=..+-+.+|++.|+..+.+..+.+.+
T Consensus 41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI 120 (202)
T PRK02830 41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344444555555555555544443221 133344444332333333334678889999999999998888877
Q ss_pred HHHHHHH
Q 015189 266 AVLMSSL 272 (411)
Q Consensus 266 s~~~l~l 272 (411)
..=|.++
T Consensus 121 ~~NCaVL 127 (202)
T PRK02830 121 TVNCAIF 127 (202)
T ss_pred HHHHHHH
Confidence 6544443
No 83
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=57.88 E-value=1.7e+02 Score=27.66 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHHHHHH
Q 015189 315 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS--SMVALPPAMSAVIMNIMGSTLG 391 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~--p~~alp~~i~~l~q~i~~~~~a 391 (411)
....+++--+.|-.+|-.+-|++|.+++..|-+++ |...=++|..=+...-++ +..++...+..++..+...++.
T Consensus 136 ta~~VvitGi~Ga~~g~~llk~~~I~~~~A~Glal--G~~sHaiGTa~a~e~~~~~ga~sslam~l~gi~t~~~~P~~~ 212 (215)
T PF04172_consen 136 TAVFVVITGILGAVLGPPLLKLLRIKDPVARGLAL--GTASHAIGTARALEIGEEAGAFSSLAMILSGILTALLAPLLA 212 (215)
T ss_pred HHHHHHHHhhHHHHhHHHHHhHcccccHHHHHHHh--ccchHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444467777888888888876665444444 443334444433322221 2244455555555555544443
No 84
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=57.76 E-value=2.5e+02 Score=30.49 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHH-HHHHHHH-HHcCCChHHHHHHHHHccCchhhHHHHH
Q 015189 108 LSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMP-TSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~P-ll~~~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~ 184 (411)
..+.+-+++.|++--.+ +.+.++++. +.+..+.+ ..+.| ++++.++ +++++++....|.+-=+-.-++... ..
T Consensus 452 ~GL~lFla~vG~~aG~~-f~~~l~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~-~a 527 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQ-AVTAIKEMGLTLFLLGIV--VTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALG-AV 527 (562)
T ss_pred HhHHHHHHHHHHhhhHH-HHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHH-HH
Confidence 44555555577766655 444553322 22334333 34445 5577777 5789999999998543333333222 22
Q ss_pred HHHcCCC-hhhHHHHH-HHHHHHHHHHHHHHH
Q 015189 185 TLIARGD-VPLSIVMT-MCTTLGAVLFTPLLT 214 (411)
Q Consensus 185 t~~a~Gd-~~la~~lt-~~stlls~~~~Pl~l 214 (411)
....+-| .+.+-+.+ .+++++=++..|+++
T Consensus 528 ~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 528 LERAGSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred HHhcCCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 3344332 12222222 345555555555444
No 85
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=56.92 E-value=12 Score=38.19 Aligned_cols=82 Identities=21% Similarity=0.133 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh---HHHHHHHHHhc-----CCcc-chHHHHHHHH
Q 015189 311 ELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS---SLGVVLATAHF-----TSSM-VALPPAMSAV 381 (411)
Q Consensus 311 ~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~---~Lai~la~~~f-----~~p~-~alp~~i~~l 381 (411)
++|.+=+-+.+-..+|..+||.+.+.++.+++.+.=+.-+++.+|+ .++++-|..+- +|++ .+---+.|..
T Consensus 74 ~~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~s 153 (408)
T KOG2722|consen 74 QWWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVS 153 (408)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHH
Confidence 3454444556667899999999999999999988766666777777 46666565443 2332 3332345555
Q ss_pred HHHHHHHHHHH
Q 015189 382 IMNIMGSTLGF 392 (411)
Q Consensus 382 ~q~i~~~~~a~ 392 (411)
+-+-.|.++.+
T Consensus 154 f~~~lg~il~w 164 (408)
T KOG2722|consen 154 FSQQLGQILRW 164 (408)
T ss_pred HHHHhhhhEEE
Confidence 55555666543
No 86
>COG2855 Predicted membrane protein [Function unknown]
Probab=55.40 E-value=1.6e+02 Score=29.83 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccchhh
Q 015189 320 LLLHFAGFFVGYLSAAICGFKEPQRRA 346 (411)
Q Consensus 320 ~ll~~~~f~~G~~l~r~lg~~~~~~~a 346 (411)
.+.-...+.++|+++|++|+|++...=
T Consensus 100 ~~~l~~t~~~~~~lg~~lgld~~~a~L 126 (334)
T COG2855 100 AITLSSTFLFAYFLGKLLGLDKKLALL 126 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 334467889999999999998886443
No 87
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=54.20 E-value=2.6e+02 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=28.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 015189 223 PVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVV 258 (411)
Q Consensus 223 ~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i 258 (411)
.+|...++.+++-++++-+++...++++-.+..+-.
T Consensus 162 g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~mIkgF 197 (354)
T PF04346_consen 162 GFDIGMILINLIPVIIFAILLAIGLWFFPEKMIKGF 197 (354)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 578888889999999999999999998754444433
No 88
>PRK10711 hypothetical protein; Provisional
Probab=54.17 E-value=2.1e+02 Score=27.47 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcc
Q 015189 315 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQ 354 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~r 354 (411)
....+++--++|..+|-.+-|++|.+++..|-+++.++.+
T Consensus 147 ta~~ViitGi~Ga~~g~~llk~~rI~~~~A~G~alG~aaH 186 (231)
T PRK10711 147 SAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASH 186 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhhH
Confidence 3444445457788888888888888777666665554433
No 89
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=53.88 E-value=1.3e+02 Score=30.25 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHH
Q 015189 140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCT 202 (411)
Q Consensus 140 ~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~s 202 (411)
..++.++..-.++|.+++.++++.+....+.+...+--...+..++...=+|.+++.......
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~ 313 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVG 313 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhh
Confidence 344567777788999999999999999998888887666655554443334444444444433
No 90
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=53.50 E-value=2.8e+02 Score=28.77 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHHHHHhh-HHHHHHHHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHH
Q 015189 67 EYLLSTAAS-LYPLYVTVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA 142 (411)
Q Consensus 67 ~~~l~~~~~-~~p~~i~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~ 142 (411)
++.+++++| +.|-.++.|.+. -...|+.+.+..+.........+...+-++|++-+.+++++.- ++..+.....
T Consensus 23 r~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg--~~l~~~~~~~ 100 (398)
T TIGR00210 23 VKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGG--KPLLIFLATA 100 (398)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhCh--HHHHHHHHHH
Confidence 455666644 578888777763 1222543321111000022445544555688888888766432 2221111110
Q ss_pred -HHHHHHHHHHHHHHHHcCCChHHHHHHHH-HccCchh-----hHHHHHHHHcC--CChhhHHHHHHHHHHHHHHH-HHH
Q 015189 143 -AQYTIMPTSGVIVSKFLGLPPALSVGLIL-LSCCPGG-----TASNVVTLIAR--GDVPLSIVMTMCTTLGAVLF-TPL 212 (411)
Q Consensus 143 -~~~vl~Pll~~~l~~~~~l~~~~~~GliL-~a~~P~~-----~~s~v~t~~a~--Gd~~la~~lt~~stlls~~~-~Pl 212 (411)
.-....=.++.+++..++++|. .|++. ....-+| .....+.+..| +-.+++++..++..+.+.+. .|+
T Consensus 101 ~~l~~~Qn~vGv~la~~~gl~P~--~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi 178 (398)
T TIGR00210 101 VGFLVIQNAVGIGMASLLGQAPL--MGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPV 178 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCChH--HHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223456667788888774 34442 1222222 23334444323 34556666667777777766 677
Q ss_pred HHHHH
Q 015189 213 LTKIL 217 (411)
Q Consensus 213 ~l~ll 217 (411)
.-++.
T Consensus 179 ~~~li 183 (398)
T TIGR00210 179 AKFLI 183 (398)
T ss_pred HHHHH
Confidence 65544
No 91
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=52.80 E-value=2.2e+02 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhHHHhcccchhHHHHHHH
Q 015189 240 PVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271 (411)
Q Consensus 240 Pl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~ 271 (411)
=.++-+.+|++.|+..+.+..+++.+..=|.+
T Consensus 104 Vq~vem~L~a~~p~Ly~aLGifLPLIttNCaV 135 (244)
T PRK01061 104 TQILELLLEKVSRNLYLSLGIFLPLIAVNCAI 135 (244)
T ss_pred HHHHHHHHHHHhHHHHHHHhcchhHHHHHHHH
Confidence 34667889999999999998888876644443
No 92
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=51.78 E-value=2.9e+02 Score=29.61 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHccCchhhHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLP--PALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~--~~~~~GliL~a~~P~~~~s~v~ 184 (411)
...+++.+...|+++++..+.+ ++..++..++..++.-.+..+..++.++.+ .....|+.+ ++.|-.+.+.
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~----~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l---~~~Gef~lii 351 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQ----QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASL---AQIGEFAFIL 351 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH---hcccchHHHH
Confidence 3456666667888888876643 233333333344555666666666666544 344455544 3334444443
Q ss_pred HHH--cCCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 015189 185 TLI--ARGD-VPLSIVMTMCTTLGAVLFTPLLTKI 216 (411)
Q Consensus 185 t~~--a~Gd-~~la~~lt~~stlls~~~~Pl~l~l 216 (411)
... ..|- .+-.-....+.++++.+++|+++..
T Consensus 352 ~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 352 AGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1221 1122223455556777777776554
No 93
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=51.22 E-value=1.9e+02 Score=26.19 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHccCchhhHHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSK-FLGLPPALSVGLILLSCCPGGTASNVV 184 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~-~~~l~~~~~~GliL~a~~P~~~~s~v~ 184 (411)
...+.+-+++.|++--++ +.+.++++. +.+..+.+. .++-.++++.+++ ++++|+....|.+-=+..-+......-
T Consensus 57 ~~GL~lFl~~VGl~aG~~-F~~~l~~~G~~~~~~~~~i-~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~ 134 (169)
T PF06826_consen 57 QLGLALFLAAVGLSAGPG-FFSSLKRGGLKLLLLGVII-TLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAAQ 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHHH
Confidence 557777778888887775 445553442 333433332 3334455788888 889999999998765544444444433
Q ss_pred HHHcCCC
Q 015189 185 TLIARGD 191 (411)
Q Consensus 185 t~~a~Gd 191 (411)
-...+.|
T Consensus 135 ~~~~~~~ 141 (169)
T PF06826_consen 135 EAISDSG 141 (169)
T ss_pred HhhhcCC
Confidence 3324444
No 94
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=50.59 E-value=2.9e+02 Score=29.30 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHH-HHHHHHHcCCChHHHHHHHHHccCch
Q 015189 145 YTIMPTS-GVIVSKFLGLPPALSVGLILLSCCPG 177 (411)
Q Consensus 145 ~vl~Pll-~~~l~~~~~l~~~~~~GliL~a~~P~ 177 (411)
|-.+|++ +|--++-|+.++.+...+-..-+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 4556765 78888889888887777777767673
No 95
>PRK03818 putative transporter; Validated
Probab=50.11 E-value=3.6e+02 Score=29.14 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV 183 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v 183 (411)
+..+.+-+++.|++.-++=+. .++++- +....+.+. .++.-++++.+.+++++++....|++-=+..-+......
T Consensus 64 ~~gl~lFv~~vGl~~Gp~f~~-~l~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa 139 (552)
T PRK03818 64 EFGLILFVYTIGIQVGPGFFS-SLRKSGLRLNLFAVLI-VILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAG 139 (552)
T ss_pred HHHHHHHHHHHhhcccHHHHH-HHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHHH
Confidence 456777778888888877554 443332 333433332 222334477777889999999999876665444444433
No 96
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.18 E-value=54 Score=25.40 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----C----CCccchhhhhhhhhcchhH
Q 015189 317 LSVLLLHFAGFFVGYLSAAIC-----G----FKEPQRRAISIEVGMQNSS 357 (411)
Q Consensus 317 l~~~ll~~~~f~~G~~l~r~l-----g----~~~~~~~al~~~~g~rN~~ 357 (411)
+..++..++|++.||+++|.. + ++++.-|++....|+|-+.
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~~iR~M~~qmGqKpSe 57 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQKPSE 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchH
Confidence 333444577889999999752 2 4556677777777776553
No 97
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=46.71 E-value=3.5e+02 Score=27.98 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015189 60 TEAKPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (411)
Q Consensus 60 ~~~~~~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (411)
++.++.++...+.+ .-..|+.++.+...|..-|....... ...++.+.++ ..-+++++|+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~l~~p~iil~~i~~g~~t~teaa~~~------~~~~l~i~~~-~~~~~~~~~l~~~l 268 (416)
T PF06808_consen 204 ASLKERWRAFKRAIPALLIPVIILGGIYLGIFTPTEAAAVA------VVYALVIGLF-VYRRLSWKDLWRAL 268 (416)
T ss_pred chHHHHHHHHHhcchHHHHHHHHHHHhhhcccchhhhhhhh------HHHHHHHHHh-hhcccChhhhhHHH
Confidence 34444555444444 44566666666666665554322221 1112222222 25778888887776
No 98
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=44.48 E-value=2.7e+02 Score=26.04 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----cccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHH
Q 015189 195 SIVMTMCTTLGAVLFTPLLTKILAG----TYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMS 270 (411)
Q Consensus 195 a~~lt~~stlls~~~~Pl~l~ll~g----~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l 270 (411)
+...+.+.++.++..-.+.-+++.. +..++++.++..-++.+=.+=..+-+.+|++.|+..+.+..+.+.+-.=|.
T Consensus 43 GlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~tNCa 122 (199)
T PRK12456 43 GLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTIHCA 122 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Confidence 3344444444444444444333321 123344433333222222223466788999999999998888887654444
Q ss_pred H
Q 015189 271 S 271 (411)
Q Consensus 271 ~ 271 (411)
+
T Consensus 123 V 123 (199)
T PRK12456 123 I 123 (199)
T ss_pred H
Confidence 3
No 99
>PRK00523 hypothetical protein; Provisional
Probab=42.29 E-value=68 Score=25.01 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----C----CCccchhhhhhhhhcchh
Q 015189 315 IILSVLLLHFAGFFVGYLSAAIC-----G----FKEPQRRAISIEVGMQNS 356 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~l-----g----~~~~~~~al~~~~g~rN~ 356 (411)
+++..++..++|.+.||+++|.. + .+++.-|++....|+|-+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPS 57 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCcc
Confidence 33444455688999999999752 2 455667788888787654
No 100
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=41.95 E-value=1.9e+02 Score=23.48 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=36.0
Q ss_pred CCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 015189 338 GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPS 400 (411)
Q Consensus 338 g~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~ 400 (411)
|.+-.| |.++.++-.-+....+.+-...++++...=...+|.++-.+..-.++++..|++++
T Consensus 29 GPt~~D-RvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~~~~~~ 90 (91)
T PRK12599 29 GPTLPD-RVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLVGRGGV 90 (91)
T ss_pred CccHhH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444566 55566655555555555555667666433334566677666666667777655433
No 101
>PRK01844 hypothetical protein; Provisional
Probab=40.98 E-value=71 Score=24.88 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------CCCccchhhhhhhhhcchh
Q 015189 317 LSVLLLHFAGFFVGYLSAAIC---------GFKEPQRRAISIEVGMQNS 356 (411)
Q Consensus 317 l~~~ll~~~~f~~G~~l~r~l---------g~~~~~~~al~~~~g~rN~ 356 (411)
+..++..++|.+.||+++|.. -.+++.-|++....|+|-+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkPS 56 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPS 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCcc
Confidence 333445678899999999752 2455667788877776654
No 102
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=40.78 E-value=65 Score=24.38 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhc
Q 015189 225 DAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVT 259 (411)
Q Consensus 225 d~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~ 259 (411)
+..++++-+.+..++=+-+|.++|+++|++-+.+.
T Consensus 2 ~i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr 36 (62)
T PF11120_consen 2 NISDIIQIIILCALIFFPLGYLARRWLPRIRRTLR 36 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 34455444444555555569999999998766543
No 103
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=40.57 E-value=3e+02 Score=25.50 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhHHHhcccchhHHHHHHHH
Q 015189 240 PVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSL 272 (411)
Q Consensus 240 Pl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~l 272 (411)
=..+-+.+|++.|+..+.+..+.+.+..=|.++
T Consensus 84 V~~ve~~l~~~~p~ly~~LGiflpLI~tNCaVL 116 (190)
T TIGR01943 84 VQFVEMVVRKTSPDLYRALGIFLPLITTNCAVL 116 (190)
T ss_pred HHHHHHHHHHhChHHHHHHhhhhhHHHHHHHHH
Confidence 345677899999999999888888766444443
No 104
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=40.48 E-value=3.7e+02 Score=28.06 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCccccccccccCCCCCCCCchh-----------------HHHHHHHHH-hhHHHHHHHHHHHH----Hhhcccccc
Q 015189 39 PSFKNLQITRCVNENSQLLPVTEAKP-----------------RWEYLLSTA-ASLYPLYVTVGGVI----ACLKPSAFG 96 (411)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~-~~~~p~~i~~~~ll----gl~~P~~~~ 96 (411)
|++.+.....=.+.+.+...+++.++ -+..+++++ .-+-+.|+++.+++ ++.-++.=+
T Consensus 217 P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~ 296 (414)
T PF03390_consen 217 PKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEE 296 (414)
T ss_pred CCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHH
Q ss_pred hhhhccchhHHHHHHHHHHHHccc-CChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccC
Q 015189 97 WFVQRGPASYSLSLGLIMLAMGLT-LELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCC 175 (411)
Q Consensus 97 ~~~~~~p~~~~~~l~~~mf~~Gl~-l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~ 175 (411)
....+..+........+|++.|+. .+++|+.+.+ .+..+...+.+-...+ +.++.++++++..|-.+.-..=++.+
T Consensus 297 ~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~--t~~~vv~~~~~Vl~~~-~~a~~vG~l~g~YPvEsAItaGLC~a 373 (414)
T PF03390_consen 297 GAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF--TPQYVVIVLATVLGAV-IGAFLVGKLVGFYPVESAITAGLCMA 373 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh--CHHHHHHHHHHHHHHH-HHHHHHHHHhCCChHHHHHHhhhccc
Q ss_pred chhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHH
Q 015189 176 PGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFT 210 (411)
Q Consensus 176 P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~ 210 (411)
--|.+..+-.--+.-..++.-..+.-|=+-..+++
T Consensus 374 n~GGtGDvAVLsAa~RM~LmpFAQIstRiGGAi~l 408 (414)
T PF03390_consen 374 NMGGTGDVAVLSAANRMELMPFAQISTRIGGAIML 408 (414)
T ss_pred CCCCCCcchheehhhhcccccHHHHHHhhhhHHHH
No 105
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=40.48 E-value=2.7e+02 Score=24.83 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHccCchhhHHHH
Q 015189 107 SLSLGLIMLAMGLTLELKDLISLFMQRP--LSILFGCAAQYTIMPTSGV-IVSKFLGLPPALSVGLILLSCCPGGTASNV 183 (411)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p--~~l~~~l~~~~vl~Pll~~-~l~~~~~l~~~~~~GliL~a~~P~~~~s~v 183 (411)
...+.+-+++.|++--.+=+. .+++.. +.+..+.++..+. .++.+ ...+++++++....|.+ .+++=.++.-..
T Consensus 57 ~~GL~lFl~~vGl~aG~~f~~-~l~~~gg~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tpaL~a 133 (154)
T TIGR01625 57 EFGLMLFLYGVGLSAGPGFFS-SLKDGGGLLRINGGALITVVP-TLLVAVALIKLLRINYALTAGML-AGATTNTPALDA 133 (154)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHH-hccccChHHHHH
Confidence 456666677788887766554 553433 2333333322222 23333 33467899999999984 344333333333
Q ss_pred HHHHcC
Q 015189 184 VTLIAR 189 (411)
Q Consensus 184 ~t~~a~ 189 (411)
..+..+
T Consensus 134 a~~~~~ 139 (154)
T TIGR01625 134 ANDTLR 139 (154)
T ss_pred HHHHhc
Confidence 344444
No 106
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=39.75 E-value=1.4e+02 Score=29.70 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC-CccchHHHHHHHHHHHHHHHHHHHHhh
Q 015189 323 HFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPAMSAVIMNIMGSTLGFFWR 395 (411)
Q Consensus 323 ~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~-~p~~alp~~i~~l~q~i~~~~~a~~~~ 395 (411)
.++|-..+...++.+|.|++|.+.--+ |.+-.-+|+.+.. +++ ++...+..++..+.-.++...+.++.+
T Consensus 40 ~llg~~~stltA~ll~~~~~~i~~GL~--GfNg~LvG~al~~-f~~~~~~~~~l~~~ga~ls~~v~~~l~~~~~ 110 (301)
T PF03253_consen 40 ALLGALISTLTARLLGYDRDDIRNGLY--GFNGALVGLALGV-FLPPSPLSWLLIILGAILSTIVTAALSRLLK 110 (301)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHTTTT--THHHHHHHHHHHH-HBB--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHhcccc--cccHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777888999999998777554333 4433356666665 454 455555555666555555555444443
No 107
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=38.77 E-value=3.3e+02 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhHHHhcccchhHHHHHHHH
Q 015189 241 VLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSL 272 (411)
Q Consensus 241 l~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~l 272 (411)
..+-+.+|++.|+..+.+..+.+.+..=|.++
T Consensus 95 ~~vem~l~a~~p~ly~~LGiflpLI~tNCaVL 126 (200)
T TIGR01940 95 QILEMVLERFSPSLYNALGIFLPLITVNCAIF 126 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 45678899999999998888888766444443
No 108
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=37.77 E-value=3.1e+02 Score=24.85 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=41.5
Q ss_pred ccCCCCCCCCchhHH-HHHHHHHh----hHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHH
Q 015189 52 ENSQLLPVTEAKPRW-EYLLSTAA----SLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDL 126 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~-~~~l~~~~----~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l 126 (411)
++-+..|.-..-++| +|.++.+. +++..++..-.+.|++-|+- .+.+. ..+...++...++....-+.+++
T Consensus 29 S~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~--iilgl--ivvvlvi~~liwa~~~~a~~krm 104 (188)
T KOG4050|consen 29 SDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQD--IILGL--IVVVLVIGTLIWAASADANIKRM 104 (188)
T ss_pred cccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHH--HHHHH--HHHHHHHHHHHHHHhccHHHHHH
Confidence 333444444444566 57777763 44555555555667777752 12111 12344555566666666555555
Q ss_pred HHHHHcCchHHHH
Q 015189 127 ISLFMQRPLSILF 139 (411)
Q Consensus 127 ~~~~~~~p~~l~~ 139 (411)
++ ++|...+.
T Consensus 105 r~---~hp~~~l~ 114 (188)
T KOG4050|consen 105 RT---DHPLVTLA 114 (188)
T ss_pred hh---cCcHHHHH
Confidence 42 45654433
No 109
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=37.13 E-value=3.6e+02 Score=25.40 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhhHHHhcccchhHHHHHHH
Q 015189 241 VLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271 (411)
Q Consensus 241 l~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~ 271 (411)
..+-+.+|++.|+..+.+..+.+.+-.=|.+
T Consensus 84 ~~ve~~l~a~~p~Ly~~LGiflpLIvtNC~V 114 (209)
T PRK09292 84 IVVDQVLKAYAYDISKQLSVFVGLIITNCIV 114 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567889999999999988888776544443
No 110
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=37.05 E-value=1.6e+02 Score=30.50 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchh---hhhhhhhcchh-HHHHHHHHHhcCC-ccchHHHHHH-HHHHHHHHHHH
Q 015189 317 LSVLLLHFAGFFVGYLSAAICGFKEPQRR---AISIEVGMQNS-SLGVVLATAHFTS-SMVALPPAMS-AVIMNIMGSTL 390 (411)
Q Consensus 317 l~~~ll~~~~f~~G~~l~r~lg~~~~~~~---al~~~~g~rN~-~Lai~la~~~f~~-p~~alp~~i~-~l~q~i~~~~~ 390 (411)
..+..+...+..+|-.++..+|+|+--.. +++++-|.-|. +.+=......+++ .++++.++-+ -+.--+.|..+
T Consensus 100 ~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpv 179 (404)
T COG0786 100 ATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPV 179 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHH
Confidence 34455667888899999999998775422 55777676665 3333333333333 3566666444 44556778888
Q ss_pred HHHhhccCCCCCCCCCC
Q 015189 391 GFFWRYIDPSDSKTSPK 407 (411)
Q Consensus 391 a~~~~~~~~~~~~~~~~ 407 (411)
+++..+|.+.|.+++++
T Consensus 180 a~~li~k~~l~~~~~~~ 196 (404)
T COG0786 180 ARWLIKKNKLKPDPTKD 196 (404)
T ss_pred HHHHHHhcCCCCCCCCC
Confidence 98888776555444443
No 111
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=36.69 E-value=3.5e+02 Score=27.07 Aligned_cols=99 Identities=21% Similarity=0.350 Sum_probs=56.8
Q ss_pred HHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCCh
Q 015189 113 IMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDV 192 (411)
Q Consensus 113 ~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~ 192 (411)
++++.|.-.|+.- .+ .+||-++.|-..|+.+. .++..+..++.++..+..+-+.+.+=+.++-++-+.+ .-|.
T Consensus 90 IFmGvGAmTDFgp---ll-anPktllLGaAAQ~GIF--~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L-AP~L 162 (375)
T COG1883 90 IFMGVGAMTDFGP---LL-ANPKTLLLGAAAQFGIF--ATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL-APEL 162 (375)
T ss_pred HHhccchhcccch---hh-cCcHHHHhhhHHHhchH--HHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc-CHHH
Confidence 4556666666554 44 68999999999999876 4555566678788777777777766544433332222 2222
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189 193 PLSIVMTMCTT-LGAVLFTPLLTKILA 218 (411)
Q Consensus 193 ~la~~lt~~st-lls~~~~Pl~l~ll~ 218 (411)
--++....-|- .+-++.=|.....+.
T Consensus 163 l~~iAvAAYSYMALVPiIQPpimkaLT 189 (375)
T COG1883 163 LGAIAVAAYSYMALVPIIQPPIMKALT 189 (375)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHhc
Confidence 22222222222 233444466666664
No 112
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=35.59 E-value=4e+02 Score=25.43 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhh
Q 015189 316 ILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIE 350 (411)
Q Consensus 316 ~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~ 350 (411)
...+++--++|..+|..+-|++|.+++..|-+++.
T Consensus 147 a~~vvitGi~Ga~~g~~ll~~~~i~~~~A~GlalG 181 (226)
T TIGR00659 147 AVFVILTGLLGTVFGPMVLRYFRVKNEIARGLLLG 181 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHh
Confidence 34444445777888888888888766554444443
No 113
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=32.73 E-value=4.1e+02 Score=24.71 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHH
Q 015189 195 SIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSL 272 (411)
Q Consensus 195 a~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~l 272 (411)
+...+.+.++.++..-++.-++.. ..+.++.++..-++.+-.+=..+-+.+|++.|+..+.+..+.+.+..=|.++
T Consensus 42 Glav~fV~~~s~~~~~~i~~~il~--p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI~tNCaVL 117 (193)
T PRK05151 42 GLATTFVLTLASICAWLVNTYILI--PLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVL 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 344444444444444444333321 1233444433322222233345677889999999998888888765444433
No 114
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=31.05 E-value=2.8e+02 Score=22.33 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHhh-CCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015189 334 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 399 (411)
Q Consensus 334 ~r~l-g~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~ 399 (411)
-|.. |.+..| |.++.++-.-|....+.+-...++++...=...++.++-.+..-.++++..|++.
T Consensus 22 ~R~v~GPt~~D-RvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~g~~ 87 (89)
T PRK06161 22 WRLLRGPRAQD-RILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLRGEV 87 (89)
T ss_pred HHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3544 444455 6666665555555555555566666643333455666655555556666655543
No 115
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=28.38 E-value=2.8e+02 Score=31.48 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHHHHHHHcccCChHHHHH--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHH
Q 015189 109 SLGLIMLAMGLTLELKDLIS--LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTL 186 (411)
Q Consensus 109 ~l~~~mf~~Gl~l~~~~l~~--~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~ 186 (411)
+-.++++..|+.+.+.++.. .....++.+++++++.++.-|..++.+..+.+.......-+++--.-|-|..|..+..
T Consensus 300 Ln~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~ 379 (810)
T TIGR00844 300 LNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAI 379 (810)
T ss_pred HHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHH
Confidence 34445566788887776632 1001256677777778888887777654444433356677777777788887776655
Q ss_pred Hc
Q 015189 187 IA 188 (411)
Q Consensus 187 ~a 188 (411)
++
T Consensus 380 ~A 381 (810)
T TIGR00844 380 LS 381 (810)
T ss_pred HH
Confidence 55
No 116
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.40 E-value=2.5e+02 Score=24.00 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 015189 316 ILSVLLLHFAGFFVGYLSAAIC 337 (411)
Q Consensus 316 ~l~~~ll~~~~f~~G~~l~r~l 337 (411)
.+.+-+++++++.+|++++..+
T Consensus 71 a~l~Y~lPll~li~g~~l~~~~ 92 (135)
T PF04246_consen 71 AFLVYLLPLLALIAGAVLGSYL 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888777543
No 117
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=26.91 E-value=6.7e+02 Score=25.33 Aligned_cols=177 Identities=13% Similarity=0.170 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHH-cCCChHHHHHH-HHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH------HH
Q 015189 145 YTIMPTSGVIVSKF-LGLPPALSVGL-ILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLT------KI 216 (411)
Q Consensus 145 ~vl~Pll~~~l~~~-~~l~~~~~~Gl-iL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l------~l 216 (411)
-+++|+++|.+.+- .++|..-+.++ --.++....+.+...+++..-+.++.--|+..-.+. =.|.++ .+
T Consensus 64 g~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alM---E~PAIival~L~~~ 140 (327)
T PF05982_consen 64 GILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALM---ESPAIIVALLLARL 140 (327)
T ss_pred HHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHH---hhhHHHHHHHHHHH
Confidence 45789999988875 47776554444 445666666666667777766666666665543222 234332 12
Q ss_pred HhCcc-----------------cccChHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhHHHhcccchhH--HHHHHHH
Q 015189 217 LAGTY-----------------VPVDAVKLSIST-----LQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLF--AVLMSSL 272 (411)
Q Consensus 217 l~g~~-----------------v~vd~~~l~~~l-----l~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~--s~~~l~l 272 (411)
..++. -+.+..++..+. ...++-=+++|++.+ |+-.+.++|+..-. +.+++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g---~~g~~~i~pf~~~lF~G~L~lFL 217 (327)
T PF05982_consen 141 FSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAG---PEGVESIKPFFVDLFKGVLCLFL 217 (327)
T ss_pred HhccccccccCCccccccccccccccHHHHHHHHHcCchHHHHHHHHHHhheeC---ccchhhccchhhccHHHHHHHHH
Confidence 22211 124455665543 234445556666554 33445666654322 3555555
Q ss_pred HHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhh
Q 015189 273 LACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISI 349 (411)
Q Consensus 273 iv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~ 349 (411)
+-....+. +++.+ +++ ..+..+...+++++++-.+|..+++.+|++..+..-++.
T Consensus 218 LeMGl~A~--~rL~~----------------l~~----~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llav 272 (327)
T PF05982_consen 218 LEMGLVAA--RRLRD----------------LRK----VGWFLIAFGILMPLINALIGIGLGWLLGLSPGGAVLLAV 272 (327)
T ss_pred HHhhHHHH--HhhHH----------------HHh----hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 54444332 23322 111 123456677888999999999999999999888664443
No 118
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=26.12 E-value=7.6e+02 Score=25.68 Aligned_cols=146 Identities=17% Similarity=0.187 Sum_probs=75.6
Q ss_pred HHHHHHHHh-hHHHHHHHHHHHHHhhcccccchhh---hccchhH-HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHH
Q 015189 66 WEYLLSTAA-SLYPLYVTVGGVIACLKPSAFGWFV---QRGPASY-SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFG 140 (411)
Q Consensus 66 ~~~~l~~~~-~~~p~~i~~~~llgl~~P~~~~~~~---~~~p~~~-~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~ 140 (411)
.+|-+++++ ...|-.++.|.+.++..|....... .. +..+ ++.....+-.+|++-+.+.+++.- ++..+...
T Consensus 24 l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~f-d~~l~~~fmliFFttiglsa~~~~lkkgG--k~l~if~~ 100 (404)
T COG0786 24 LVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNF-DTSLQDVFMLIFFATIGLSASFKLLKKGG--KKLAIFLA 100 (404)
T ss_pred HHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeC-CcccccHHHHHHHHHhccccchhHHHhcC--hhHHHHHH
Confidence 356666774 4578788888776666654321111 11 1112 233333344589999988887653 23222221
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCChHHHHHHHHHccCc-------hhhHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHH-
Q 015189 141 CAAQY-TIMPTSGVIVSKFLGLPPALSVGLILLSCCP-------GGTASNVVTLIARGD--VPLSIVMTMCTTLGAVLF- 209 (411)
Q Consensus 141 l~~~~-vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P-------~~~~s~v~t~~a~Gd--~~la~~lt~~stlls~~~- 209 (411)
...-+ ++-=.++..++.++++||.+ |++. ++.+ .+..++.+.+. |-+ .+++....++..+.+.+.
T Consensus 101 ~a~~l~~~Qn~igi~la~~lgidpl~--glla-gsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~ATfGlv~GgliG 176 (404)
T COG0786 101 TAAGLAVLQNFIGIGLAKLLGLDPLI--GLLA-GSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMASATFGLVAGGLIG 176 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHH--HHHh-cceeecCCCchHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhHhcC
Confidence 11111 11223456677778887754 3333 2222 22344556555 333 455555556666666665
Q ss_pred HHHHHHHHh
Q 015189 210 TPLLTKILA 218 (411)
Q Consensus 210 ~Pl~l~ll~ 218 (411)
.|+--++.-
T Consensus 177 gpva~~li~ 185 (404)
T COG0786 177 GPVARWLIK 185 (404)
T ss_pred cHHHHHHHH
Confidence 687777663
No 119
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.72 E-value=7.2e+02 Score=25.31 Aligned_cols=180 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHhhcccccchhhh----ccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHH
Q 015189 67 EYLLSTAA-SLYPLYVTVGGVIACLKPSAFGWFVQ----RGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGC 141 (411)
Q Consensus 67 ~~~l~~~~-~~~p~~i~~~~llgl~~P~~~~~~~~----~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l 141 (411)
++-+++++ .+.|-.++.|.+..+. +........ .........+...+-++|++-+.+.+++.- | .-......
T Consensus 23 r~ki~~lqk~~IPasvIgGli~~il-~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg-~-~~~~~~~~ 99 (368)
T PF03616_consen 23 RAKIPFLQKLFIPASVIGGLIFAIL-PLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGG-K-AVLIFLLI 99 (368)
T ss_pred HHHhHHHHHccCCchHHHHHHHHHH-HHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhH-H-HHHHHHHH
Confidence 45566664 4578888777653333 221111111 100123334444445688988888877653 2 11111111
Q ss_pred H-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHccC-----chhh--HHHHHHHHcC--CChhhHHHHHHHHHHHHHHH-H
Q 015189 142 A-AQYTIMPTSGVIVSKFLGLPPALSVGLILLSCC-----PGGT--ASNVVTLIAR--GDVPLSIVMTMCTTLGAVLF-T 210 (411)
Q Consensus 142 ~-~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~-----P~~~--~s~v~t~~a~--Gd~~la~~lt~~stlls~~~-~ 210 (411)
. ....+-=+++..++.+++++|.+ |++. ++. +++. ....+....| +-.+++++..++..+.+.+. .
T Consensus 100 ~~~~~~~Q~~vG~~la~l~gl~p~~--Gll~-Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGg 176 (368)
T PF03616_consen 100 AIILAFLQNIVGLGLAKLLGLDPLF--GLLA-GSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGG 176 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchH--HHHh-ccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233334567778888888754 4432 221 2222 2234444322 33456666666777665444 7
Q ss_pred HHHHHHHhCccc------------------------ccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015189 211 PLLTKILAGTYV------------------------PVDAVKLSISTLQIVVAPVLLGSYMQSAFPA 253 (411)
Q Consensus 211 Pl~l~ll~g~~v------------------------~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~ 253 (411)
|+.-++.-..+. +++..+++. -+..+.+.+.+|..++.+..+
T Consensus 177 pi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~-~l~~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 177 PIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIE-HLALILIAIGLGYIISALLKK 242 (368)
T ss_pred HHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 876554421110 112233333 344566677777777766543
No 120
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=25.47 E-value=7.5e+02 Score=25.39 Aligned_cols=100 Identities=24% Similarity=0.271 Sum_probs=52.2
Q ss_pred HHHhhcccccch---hhh-ccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015189 86 VIACLKPSAFGW---FVQ-RGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL 161 (411)
Q Consensus 86 llgl~~P~~~~~---~~~-~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l 161 (411)
+.|+..++.... .+. ..|.-....+++-+...|+++|.+.+.+. +.........-.+..=...+..++.++.
T Consensus 251 laGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~----~~~~l~~~~~~i~~K~~~~~~~~~~~g~ 326 (397)
T COG0475 251 LAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN----LLLILLLVALAILGKILGAYLAARLLGF 326 (397)
T ss_pred HHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666664222 221 22322236778888889999998887643 3332222222233333446666777775
Q ss_pred ChHHHHHHHHHccCchhhHHHHHHHHcCC
Q 015189 162 PPALSVGLILLSCCPGGTASNVVTLIARG 190 (411)
Q Consensus 162 ~~~~~~GliL~a~~P~~~~s~v~t~~a~G 190 (411)
+...+.+.-..... .+..+.+......|
T Consensus 327 ~~~~~~~~g~~~~~-~ge~~~v~~~~~~~ 354 (397)
T COG0475 327 SKRLALGIGLLLRQ-GGEFAFVLAGIALG 354 (397)
T ss_pred cHHHHHHHHhhhhh-hhHHHHHHHHhccc
Confidence 54444443333332 34455555555555
No 121
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=24.98 E-value=7.9e+02 Score=25.46 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchh---hhhhhhhcchh-HHHHHHHHHhcC--C-ccchHHH-HHHHHHHHHHHH
Q 015189 317 LSVLLLHFAGFFVGYLSAAICGFKEPQRR---AISIEVGMQNS-SLGVVLATAHFT--S-SMVALPP-AMSAVIMNIMGS 388 (411)
Q Consensus 317 l~~~ll~~~~f~~G~~l~r~lg~~~~~~~---al~~~~g~rN~-~Lai~la~~~f~--~-p~~alp~-~i~~l~q~i~~~ 388 (411)
..+..+...++.+|..++..+|.++.-.. +++++-|.-+. +.|-.... .++ + .++++.. +++-+.-.+.|.
T Consensus 98 ~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e-~~G~~~a~~lgla~AT~GLv~g~liGg 176 (398)
T TIGR00210 98 ATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYD-NYGFRNATEIAIACATFGLVFGGIIGG 176 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHH-HcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455668888999999999998886543 36777554333 23323222 232 2 1233333 455566777788
Q ss_pred HHHHHhhccCCC
Q 015189 389 TLGFFWRYIDPS 400 (411)
Q Consensus 389 ~~a~~~~~~~~~ 400 (411)
.++++..||.+-
T Consensus 177 pi~~~lirk~~l 188 (398)
T TIGR00210 177 PVAKFLIIRNKL 188 (398)
T ss_pred HHHHHHHHcCCC
Confidence 888887666644
No 122
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.26 E-value=1.6e+02 Score=31.26 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------cCCChHHHHHHHHHcc---CchhhHHHHHHHHcCCChhhHHHHHHHHHHHHH
Q 015189 138 LFGCAAQYTIMPTSGVIVSKF-------LGLPPALSVGLILLSC---CPGGTASNVVTLIARGDVPLSIVMTMCTTLGAV 207 (411)
Q Consensus 138 ~~~l~~~~vl~Pll~~~l~~~-------~~l~~~~~~GliL~a~---~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~ 207 (411)
.+.++...+..-..-|++.|. ++.++ ...|+-++++ .|==..|.+.++..=||.+.+ ..+-||+.-+
T Consensus 426 ~vTFigSIlWIA~fSYLMVWwa~~iGeT~gIp~-eIMGLTiLAAGTSIPDlitSvIVARKGlGDMAVS--sSiGSNiFDI 502 (588)
T KOG1307|consen 426 PVTFIGSILWIAAFSYLMVWWANIIGETLGIPD-EIMGLTILAAGTSIPDLITSVIVARKGLGDMAVS--SSIGSNIFDI 502 (588)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHcccccCCCH-HHhhhhhhhcCCchHHhhHhhhhcccccccceee--cccccchhhe
Confidence 334444444445556666554 35544 4556666654 343446777888888887654 4455666665
Q ss_pred HH---HHHHHHHHhCcc---cccChHHHHHH--HHHHHHHHHHHHHHHHHhhhhhHHHhcccchh
Q 015189 208 LF---TPLLTKILAGTY---VPVDAVKLSIS--TLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPL 264 (411)
Q Consensus 208 ~~---~Pl~l~ll~g~~---v~vd~~~l~~~--ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~ 264 (411)
.+ +|-+++.+.... +.++--+++.+ +++..++=++.|+.+++| |++|.+..
T Consensus 503 ~VGLplPWLL~~lI~~~~~~i~vsS~GL~csi~lLf~ml~v~v~~ia~~rW------rMnK~lG~ 561 (588)
T KOG1307|consen 503 LVGLPLPWLLYTLIYGFKSKISVSSNGLVCSIGLLFAMLIVLVLGIALSRW------RMNKILGF 561 (588)
T ss_pred eecCCcHHHHHHHHhhcCCceeecCCceehHHHHHHHHHHHHHHHHHHHhh------hcccchhH
Confidence 54 677776655433 44554444433 455566667889988877 45555543
No 123
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=23.25 E-value=3.9e+02 Score=26.12 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhh-----CCCccchhhhhhhh
Q 015189 323 HFAGFFVGYLSAAIC-----GFKEPQRRAISIEV 351 (411)
Q Consensus 323 ~~~~f~~G~~l~r~l-----g~~~~~~~al~~~~ 351 (411)
..+.|.=||.+-+.+ +++.-||.++++..
T Consensus 32 ~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~gl 65 (287)
T PF07760_consen 32 PFVLFLPGYALVAALFPRKHDLDGIERLALSVGL 65 (287)
T ss_pred HHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHH
Confidence 345566688877666 34556677777654
No 124
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=23.21 E-value=5.2e+02 Score=26.35 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHccc-CChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 015189 76 LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLT-LELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (411)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~-l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (411)
+..+..++.-.+|+.-++.-+....+..+........+|.+.|+. .+++|+.+.+ .+..+......-.... +.++.
T Consensus 209 ~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~--t~~~vviiv~~Vlg~i-i~s~l 285 (347)
T TIGR00783 209 FMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL--SWQFVVICLSVVVAMI-LGGAF 285 (347)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh--chhHhhhHHHHHHHHH-HHHHH
Q ss_pred HHHHcCCCh-HHHHHHHHHccCchhh
Q 015189 155 VSKFLGLPP-ALSVGLILLSCCPGGT 179 (411)
Q Consensus 155 l~~~~~l~~-~~~~GliL~a~~P~~~ 179 (411)
++++++.-| |-+..-=+|.+-=+|+
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGt 311 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGT 311 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCC
No 125
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=22.04 E-value=7.1e+02 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.009 Sum_probs=28.1
Q ss_pred CCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 015189 338 GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID 398 (411)
Q Consensus 338 g~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~ 398 (411)
|.+.+...+-.+++..=|. ..+......|+ +..++-=.+.++...+..+++...+.+++
T Consensus 80 Ga~~~~~~aFl~a~p~~n~-~~~~~~~~~lg-~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 80 GAPLGAAMAFLLASPLLNP-IVLLLTWAALG-WKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred CCCcchhHHHHHhhHHhhH-HHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444443333344344443 33334445675 55554444455555555555555554444
No 126
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=21.07 E-value=1.5e+02 Score=17.50 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 015189 235 QIVVAPVLLGSYMQSA 250 (411)
Q Consensus 235 ~~vllPl~lG~~lr~~ 250 (411)
..++.|++.|..++-+
T Consensus 2 ~~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHH
Confidence 3578899999888743
No 127
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=20.90 E-value=9.4e+02 Score=24.85 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=37.1
Q ss_pred CCCCCchhHHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015189 57 LPVTEAKPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (411)
Q Consensus 57 ~~~~~~~~~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (411)
+++.+.++.++...+.+ ...+|+.++.|...|.+-|.-..... ..+.+.+-+| ..-.++++++.+.+
T Consensus 155 ~~~~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~ia------v~yal~v~~~-vYr~l~~~~l~~~l 222 (379)
T COG1593 155 EERASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIA------VLYALLVGAF-VYRELTLKELPKVL 222 (379)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH------HHHHHHHHHH-HHhhccHHHHHHHH
Confidence 33344456666555555 66778888888776766665333222 1122222222 33566788887776
No 128
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.12 E-value=6.3e+02 Score=24.29 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=35.1
Q ss_pred hhhhhhhhhcchhH---HHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 015189 344 RRAISIEVGMQNSS---LGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID 398 (411)
Q Consensus 344 ~~al~~~~g~rN~~---Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~ 398 (411)
+.+.+.++|.-|.. +..-++.--++||..+-..++..+.-.-+...+.++.|+|.
T Consensus 220 ATayaLtgsslNivPI~l~AqIrGDVl~np~lg~ALa~~mi~it~v~n~~~~wlr~rs 277 (282)
T COG4132 220 ATAYALTGSSLNIVPILLYAQIRGDVLHNPNLGYALAFGMIVITGVANLLYIWLRKRS 277 (282)
T ss_pred HHHHHhccCCcchhHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777773 44445545566787777777766666666666666666663
Done!