Query 015189
Match_columns 411
No_of_seqs 206 out of 1704
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 8.6E-53 3E-57 418.4 36.7 316 64-408 7-323 (332)
2 2ks1_B Epidermal growth factor 33.3 76 0.0026 21.3 4.6 15 385-399 26-40 (44)
3 2l2t_A Receptor tyrosine-prote 32.5 54 0.0019 22.1 3.8 15 387-401 27-41 (44)
4 2jwa_A Receptor tyrosine-prote 28.6 76 0.0026 21.3 4.0 18 384-401 25-42 (44)
5 3zux_A Transporter, ASBTNM; tr 21.2 5.2E+02 0.018 24.3 17.0 36 136-171 229-264 (332)
6 2kv5_A FST, putative uncharact 20.2 55 0.0019 20.6 1.8 18 233-250 4-21 (33)
7 3k3f_A UREA transporter; membr 20.1 3.7E+02 0.013 25.8 8.8 43 323-368 55-97 (340)
8 4ezc_A UREA transporter 1; mem 12.2 8.9E+02 0.031 23.6 9.3 43 322-367 90-132 (384)
9 1vf5_F Protein PET M; photosyn 11.6 3.2E+02 0.011 17.4 4.7 22 315-336 8-29 (35)
10 1q90_M Cytochrome B6F complex 8.4 4.6E+02 0.016 17.0 4.4 27 310-336 4-30 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=8.6e-53 Score=418.41 Aligned_cols=316 Identities=34% Similarity=0.558 Sum_probs=286.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189 64 PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (411)
Q Consensus 64 ~~~~~~l~~~~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (411)
+.++|+.+++++++++++++++++|+++|+.+.++++ .+.++++++||.+|++++.+|+++.+ ||||.+..++++
T Consensus 7 ~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~----~i~~~l~~~mf~~G~~l~~~~l~~~~-~~~~~~~~~l~~ 81 (332)
T 3zux_A 7 NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP----YIPWLLGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIA 81 (332)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGG----GHHHHHHHHHHHHHHHCCGGGGHHHH-HSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHH----HHHHHHHHHHHHHHhCCCHHHHHHHH-hCcHHHHHHHHH
Confidence 3567889999999999999999999999999888764 56789999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 015189 144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP 223 (411)
Q Consensus 144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~ 223 (411)
|++++|+++|+++++++++++++.|+++++||||+++|++||+++|||.++++.++.+||+++++++|+++.++.|++++
T Consensus 82 ~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~ 161 (332)
T 3zux_A 82 QFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE 161 (332)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHH
Q 015189 224 VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR 303 (411)
Q Consensus 224 vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~ 303 (411)
+|+.+++.+++.++++|+++|+++|+++|++.+++++..+.++.++++++++.+++.|.+.+.+.
T Consensus 162 v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~--------------- 226 (332)
T 3zux_A 162 IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES--------------- 226 (332)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc---------------
Confidence 99999999999999999999999999999999999999999999999888888888877655431
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC-CccchHHHHHHHHH
Q 015189 304 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPAMSAVI 382 (411)
Q Consensus 304 l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~-~p~~alp~~i~~l~ 382 (411)
...++..+++++.++|.+||+++|++|++++|++|+++|+|+||+++|+++|..+|+ +|++++|.++|++|
T Consensus 227 --------~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~ 298 (332)
T 3zux_A 227 --------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVW 298 (332)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 123556678889999999999999999999999999999999999999999999997 68999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCc
Q 015189 383 MNIMGSTLGFFWRYIDPSDSKTSPKT 408 (411)
Q Consensus 383 q~i~~~~~a~~~~~~~~~~~~~~~~~ 408 (411)
|++.+++++.+|+|++++++ ++++|
T Consensus 299 q~i~~~~la~~~~~~~~~~~-~~~~~ 323 (332)
T 3zux_A 299 HNISGSLLATYWAAKAGKHK-KPLDR 323 (332)
T ss_dssp HHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHcCccccC-Cchhh
Confidence 99999999999998875554 44444
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.33 E-value=76 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhccCC
Q 015189 385 IMGSTLGFFWRYIDP 399 (411)
Q Consensus 385 i~~~~~a~~~~~~~~ 399 (411)
++......+||||+.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 344444455666543
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.54 E-value=54 Score=22.07 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=7.2
Q ss_pred HHHHHHHhhccCCCC
Q 015189 387 GSTLGFFWRYIDPSD 401 (411)
Q Consensus 387 ~~~~a~~~~~~~~~~ 401 (411)
......+||||+.++
T Consensus 27 ~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 27 GLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHTTCSSC
T ss_pred HHHHHHHhhhhhhhh
Confidence 333345566655443
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.55 E-value=76 Score=21.35 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhccCCCC
Q 015189 384 NIMGSTLGFFWRYIDPSD 401 (411)
Q Consensus 384 ~i~~~~~a~~~~~~~~~~ 401 (411)
.+.+..+..++|||+.++
T Consensus 25 vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHhheehhhhhc
Confidence 334444455566665443
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=21.23 E-value=5.2e+02 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 015189 136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL 171 (411)
Q Consensus 136 ~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL 171 (411)
.+....+..+.+.-.++|.+++.++.+.+....+.+
T Consensus 229 ~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 229 LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence 344444445556666777888888887766666555
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.16 E-value=55 Score=20.62 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 015189 233 TLQIVVAPVLLGSYMQSA 250 (411)
Q Consensus 233 ll~~vllPl~lG~~lr~~ 250 (411)
++..++.|+++|+.++-+
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999998854
No 7
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=20.14 E-value=3.7e+02 Score=25.84 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC
Q 015189 323 HFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT 368 (411)
Q Consensus 323 ~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~ 368 (411)
.++|-.++...++++|.|+++.+.--+ |.+-.-.|+.++. +++
T Consensus 55 allG~~~stltA~llg~~~~~i~~GL~--GfNg~Lvglal~~-f~~ 97 (340)
T 3k3f_A 55 AVLGTAASTLTAQLLGVDKPLVRAGLF--GFNGTLAGIALPF-FFN 97 (340)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHTTTT--THHHHHHHHHHHH-HBC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhhh--hhhHHHHHHHHHH-Hhc
Confidence 456667788888888888776544322 4333345555553 443
No 8
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=12.20 E-value=8.9e+02 Score=23.55 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhc
Q 015189 322 LHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHF 367 (411)
Q Consensus 322 l~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f 367 (411)
..++|-.++.+.++++|.|+++.+.--+ |.+-.-.|++++. ++
T Consensus 90 ~allG~~vstltA~llg~~~~~I~~GLy--GfNg~Lvgial~~-f~ 132 (384)
T 4ezc_A 90 NGCVGTVVSTLTALLLSQDRSAITAGLQ--GYNATLVGILMAI-YS 132 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHTTT--THHHHHHHHHHHH-TB
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHcchh--hhhHHHHHHHHHH-Hh
Confidence 3466777888888998988776544322 4433455555553 44
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=11.61 E-value=3.2e+02 Score=17.36 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015189 315 IILSVLLLHFAGFFVGYLSAAI 336 (411)
Q Consensus 315 i~l~~~ll~~~~f~~G~~l~r~ 336 (411)
+...+..+.++|.++|+.+-|.
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 3445566678899999998875
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=8.42 E-value=4.6e+02 Score=17.03 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189 310 GELGVIILSVLLLHFAGFFVGYLSAAI 336 (411)
Q Consensus 310 ~~~~~i~l~~~ll~~~~f~~G~~l~r~ 336 (411)
+++..+...+..+.++|.++|+.+-|.
T Consensus 4 ~EIf~~A~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 4 EFIAGTALTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!