Query 015191
Match_columns 411
No_of_seqs 133 out of 248
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 1E-164 3E-169 1263.3 34.4 387 7-411 1-390 (478)
2 PRK11677 hypothetical protein; 69.0 9.6 0.00021 34.5 5.0 44 16-63 2-45 (134)
3 PF07219 HemY_N: HemY protein 54.5 26 0.00056 29.8 4.9 46 13-58 13-65 (108)
4 PF06305 DUF1049: Protein of u 53.9 52 0.0011 25.2 6.1 47 17-63 18-64 (68)
5 COG1033 Predicted exporters of 51.6 31 0.00068 39.2 6.2 55 20-74 251-316 (727)
6 TIGR03777 RPE4 Rickettsial pal 40.6 13 0.00027 26.0 0.7 9 348-356 24-32 (32)
7 PF01578 Cytochrom_C_asm: Cyto 39.1 89 0.0019 29.2 6.4 30 51-80 116-145 (214)
8 PF12801 Fer4_5: 4Fe-4S bindin 31.2 85 0.0018 22.6 3.8 25 15-39 1-25 (48)
9 TIGR00540 hemY_coli hemY prote 30.2 81 0.0018 32.5 4.9 37 13-49 38-81 (409)
10 PRK10747 putative protoheme IX 27.8 88 0.0019 32.2 4.7 37 13-49 38-81 (398)
11 TIGR02976 phageshock_pspB phag 26.0 2.2E+02 0.0047 23.4 5.7 28 16-43 3-30 (75)
12 PF13297 Telomere_Sde2_2: Telo 25.5 37 0.0008 27.0 1.1 13 56-68 17-29 (60)
13 KOG4484 Uncharacterized conser 25.2 1.3E+02 0.0029 28.7 4.9 36 33-68 91-130 (199)
14 PF10751 DUF2535: Protein of u 25.1 60 0.0013 27.3 2.3 25 254-278 41-66 (83)
15 PF15031 DUF4528: Domain of un 24.2 18 0.0004 32.2 -0.9 56 241-299 43-101 (126)
16 PF14015 DUF4231: Protein of u 24.1 2.3E+02 0.005 23.5 5.8 42 18-65 53-94 (112)
17 PHA03105 EEV glycoprotein; Pro 22.8 92 0.002 29.4 3.3 32 19-50 9-40 (188)
18 PF12129 Phtf-FEM1B_bdg: Male 22.1 1.3E+02 0.0029 28.1 4.2 68 249-332 71-148 (159)
19 COG3105 Uncharacterized protei 21.4 1.8E+02 0.004 26.6 4.8 59 16-79 7-75 (138)
20 PF06342 DUF1057: Alpha/beta h 20.9 50 0.0011 33.8 1.3 34 255-291 39-72 (297)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-164 Score=1263.34 Aligned_cols=387 Identities=60% Similarity=1.067 Sum_probs=369.7
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 015191 7 YERTLEETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELMLLGFISLLLTVLQEPISGICVS 86 (411)
Q Consensus 7 ~~~sLe~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~ELMLLGFISLLLtv~q~~I~kICIp 86 (411)
|+|+||+||||+||+||+|+|++|+++||++|++||||+|++||+|++||||+|||||+|||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCccccCCcccccccccCCchhhhHhhhhhccCCCcccccccc---ccCCCccccCCccccccccchhhHHHHHHHH
Q 015191 87 KSVANSWHPCTDKLEKDAYSSDNKESRRRLLSFLDSGTASTRRSLA---TKGYDKCADEGKVAFVSAYGIHQLHIFIFVL 163 (411)
Q Consensus 87 ~s~~~~mlPC~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rr~la---~~~~~~C~~~Gkvpl~S~e~lhQLHiFIFvL 163 (411)
++++++|+||+.+++.++.. ++ .+.||+|+ ++++++|++||||||+|.|||||||||||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~-~~---------------~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVL 144 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEG-SS---------------HNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVL 144 (478)
T ss_pred hhHHhcccCCCCcccccccc-cc---------------hhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHH
Confidence 99999999999755433211 11 13455554 3557899888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhchhccccCCcceeeeeeeccccccccccCCCchhHHHHHHHHHHhhcCCc
Q 015191 164 AVFHVLYCLFTLALGRTKMKKWKAWENETKTIEYQYYNDPERFRFARDTSFGRRHLNIWSKSSISLWIVCFFRQFLGSVN 243 (411)
Q Consensus 164 Av~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~~~r~~~q~~f~~~h~~~w~~~~~~~w~~~FfrQF~~SV~ 243 (411)
||+||+|||+||+||++|||+||+||+|+++++||..+||+|+|++||++|+|+|.++|++++++.|++|||||||+||+
T Consensus 145 AV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~ 224 (478)
T PF03094_consen 145 AVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFFRQFYGSVT 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccChhHHhHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCccchHHHHHHHHhhcccceeeechhHHHHHHHHHHhccCCceeeEeechhHHHHHHHH
Q 015191 244 KIDYHTLRHGFIMAHLAPGSETKFDFQKYISRSLEEDFKDVVGITPILWFIATLFLLTNTHGWFAYLWLPFIPLFIILLV 323 (411)
Q Consensus 244 k~DY~tLR~gFI~~H~~p~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vv~Flllnv~gw~~yfWlsfiPlil~L~V 323 (411)
|+||+|||+|||++|++||+ ||||||||+||||||||+||||||+||++||+|+|+|++|||+|||+||||++++|+|
T Consensus 225 k~DYltLR~gFI~~H~~~~~--~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~V 302 (478)
T PF03094_consen 225 KSDYLTLRHGFITAHLLPNP--KFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLV 302 (478)
T ss_pred HHHHHHHHHHHHHhhcCCCC--CCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHH
Confidence 99999999999999999865 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhcCCcccCCccccCCCCccccCCchHHHHHHHHHHHHhhHHHHHHHHHHhhhccccccccCccc
Q 015191 324 GAKLQVIITKLGLRIQERGDVVKGAPVVQPGDDLFWFGRPRFILFLIHLVLFQNAFQLAFFSWSTYEFALKSCFHKKTED 403 (411)
Q Consensus 324 GtKLq~II~~la~ei~~~~~~~~g~~~v~p~D~lFWF~rP~llL~lIhfiLFQNAFelA~F~W~~~~fG~~SC~~~~~~~ 403 (411)
|||||+|||+||+|++|++++++|+|+|||+|++|||+|||++|+||||+|||||||||||+|+||+||++||||++.++
T Consensus 303 GtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~ 382 (478)
T PF03094_consen 303 GTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEY 382 (478)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecC
Q 015191 404 IAIRISMG 411 (411)
Q Consensus 404 i~~Rl~~G 411 (411)
+++|+++|
T Consensus 383 ~i~rl~~g 390 (478)
T PF03094_consen 383 IIIRLVMG 390 (478)
T ss_pred eeeehhhh
Confidence 99999987
No 2
>PRK11677 hypothetical protein; Provisional
Probab=69.00 E-value=9.6 Score=34.54 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHH
Q 015191 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAEL 63 (411)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~EL 63 (411)
+|..|++++|+.+ ++=..+.+++..=. ++++.|.+-||+.|.||
T Consensus 2 ~W~~a~i~livG~---iiG~~~~R~~~~~~-~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVGI---IIGAVAMRFGNRKL-RQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhhccchh-hHHHHHHHHHHHHHHHH
Confidence 4888887766544 23333444322211 35678999999999998
No 3
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.54 E-value=26 Score=29.85 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=34.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHH-------HhhHhhhccchHHHHHHHH
Q 015191 13 ETPTWAVAAVFFVLIAVSVVIEHLIHI-------IGKWLNNRHKKALFEAVEK 58 (411)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~Lkk~~kkaL~~ALeK 58 (411)
+|.-|..++++.+++++..++.+.+-. +.+|.+++|++.-++||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777888888765 5778888887777777654
No 4
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.88 E-value=52 Score=25.20 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHH
Q 015191 17 WAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAEL 63 (411)
Q Consensus 17 WaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~EL 63 (411)
+-++++..+..++..++=-.+.....+=.|++.+.+.+.+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445554444444455577888888888886
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=51.64 E-value=31 Score=39.23 Aligned_cols=55 Identities=22% Similarity=0.426 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccc-----hHHHHHHHHHHHHHHH------HHHHHHHHH
Q 015191 20 AAVFFVLIAVSVVIEHLIHIIGKWLNNRHK-----KALFEAVEKVKAELML------LGFISLLLT 74 (411)
Q Consensus 20 A~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~k-----kaL~~ALeKiK~ELML------LGFISLLLt 74 (411)
.+..++.++|.+.++.++|...++.+.+++ .|+.+|+.|...=.++ +||+||+.+
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s 316 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTS 316 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHc
Confidence 344566778889999999999999887775 4777888877766654 799999875
No 6
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=40.58 E-value=13 Score=26.03 Aligned_cols=9 Identities=67% Similarity=1.169 Sum_probs=6.7
Q ss_pred CccccCCCC
Q 015191 348 APVVQPGDD 356 (411)
Q Consensus 348 ~~~v~p~D~ 356 (411)
+|+||||||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 467888876
No 7
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=39.15 E-value=89 Score=29.17 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 015191 51 ALFEAVEKVKAELMLLGFISLLLTVLQEPI 80 (411)
Q Consensus 51 aL~~ALeKiK~ELMLLGFISLLLtv~q~~I 80 (411)
+-.+.||++-.-++..||+.+.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 456888999999999999999998777653
No 8
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=31.15 E-value=85 Score=22.56 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 015191 15 PTWAVAAVFFVLIAVSVVIEHLIHI 39 (411)
Q Consensus 15 PTWaVA~Vc~v~v~iSl~~Er~lH~ 39 (411)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455556666888888889886543
No 9
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=30.18 E-value=81 Score=32.47 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=25.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHH-------HHhhHhhhccc
Q 015191 13 ETPTWAVAAVFFVLIAVSVVIEHLIH-------IIGKWLNNRHK 49 (411)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH-------~lgk~Lkk~~k 49 (411)
+|+-|..+++..+++++.+++++.+. .+.+|..++|+
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 36667776666666666678889984 45668877654
No 10
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.81 E-value=88 Score=32.20 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=27.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHH-------HhhHhhhccc
Q 015191 13 ETPTWAVAAVFFVLIAVSVVIEHLIHI-------IGKWLNNRHK 49 (411)
Q Consensus 13 ~TPTWaVA~Vc~v~v~iSl~~Er~lH~-------lgk~Lkk~~k 49 (411)
+|+-|..++++.+++++.+++++.+.. +.+|..++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 477788888888888888888998854 4578777554
No 11
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.00 E-value=2.2e+02 Score=23.45 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 015191 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKW 43 (411)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~ 43 (411)
.|.+++-..+|+++-..++-.+||..|+
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777887778899999977765
No 12
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=25.54 E-value=37 Score=26.97 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 015191 56 VEKVKAELMLLGF 68 (411)
Q Consensus 56 LeKiK~ELMLLGF 68 (411)
+|++|+|||-+|.
T Consensus 17 ldrLK~~L~a~GL 29 (60)
T PF13297_consen 17 LDRLKSALMALGL 29 (60)
T ss_pred HHHHHHHHHHcCC
Confidence 6899999999884
No 13
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.24 E-value=1.3e+02 Score=28.68 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=30.1
Q ss_pred HHHHHHHHhhHhhhcc----chHHHHHHHHHHHHHHHHHH
Q 015191 33 IEHLIHIIGKWLNNRH----KKALFEAVEKVKAELMLLGF 68 (411)
Q Consensus 33 ~Er~lH~lgk~Lkk~~----kkaL~~ALeKiK~ELMLLGF 68 (411)
+||.+.+|.|-++... .+.+.+-|.|+|++||..-|
T Consensus 91 aeR~irrLeK~~keS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 91 AERSIRRLEKLIKESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 6889999999888543 56799999999999998755
No 14
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=25.14 E-value=60 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=17.6
Q ss_pred HHHh-hcCCCCCCccchHHHHHHHHh
Q 015191 254 FIMA-HLAPGSETKFDFQKYISRSLE 278 (411)
Q Consensus 254 FI~~-H~~p~~~~~FdFhkYi~RsLE 278 (411)
||.+ +..+++...|.|+.|++|.|.
T Consensus 41 fi~~vy~~~~~~~vYSFreYlKr~lK 66 (83)
T PF10751_consen 41 FIAKVYNSKSPRKVYSFREYLKRVLK 66 (83)
T ss_pred HHHHHHhCCCCCceeeHHHHHHHhcC
Confidence 4544 334445568999999999984
No 15
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=24.16 E-value=18 Score=32.22 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=36.5
Q ss_pred CCchhhHHHHHHH---HHHhhcCCCCCCccchHHHHHHHHhhcccceeeechhHHHHHHHHH
Q 015191 241 SVNKIDYHTLRHG---FIMAHLAPGSETKFDFQKYISRSLEEDFKDVVGITPILWFIATLFL 299 (411)
Q Consensus 241 SV~k~DY~tLR~g---FI~~H~~p~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vv~Fl 299 (411)
.|..+.|.-||-| ||.-||.-.+..+.++++-.-|++.- .-.||.-.+..++..|+
T Consensus 43 ~v~g~NYhILRTGCfPfiKYHCtkrp~qdL~~ed~ff~~iKv---~NlGiP~L~YGl~a~~l 101 (126)
T PF15031_consen 43 TVDGSNYHILRTGCFPFIKYHCTKRPPQDLSFEDRFFTAIKV---INLGIPCLAYGLAAWFL 101 (126)
T ss_pred ccCCceEEEEeecCccceeeeecCCChhhcchHHHHHHHHHH---HhcCchHHHHHHHHhhe
Confidence 4888999999999 99999986555566666555555421 12455555555555444
No 16
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=24.14 E-value=2.3e+02 Score=23.45 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHHH
Q 015191 18 AVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELML 65 (411)
Q Consensus 18 aVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~ELML 65 (411)
.+++++++++++.-.+...-..=.+|.+.| .+.|++|.|.+.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344467777777777777777777777644 455666666553
No 17
>PHA03105 EEV glycoprotein; Provisional
Probab=22.79 E-value=92 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhccch
Q 015191 19 VAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKK 50 (411)
Q Consensus 19 VA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kk 50 (411)
+.++|+.++++..++=-.=|..-|+|+|+++|
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K 40 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGK 40 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35678888888888888889999999988864
No 18
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=22.12 E-value=1.3e+02 Score=28.15 Aligned_cols=68 Identities=25% Similarity=0.458 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCCCCCccchHHHHHHHHhhcccceeeechhHHHHHHHHHHhccCCceeeEeec----------hhHHH
Q 015191 249 TLRHGFIMAHLAPGSETKFDFQKYISRSLEEDFKDVVGITPILWFIATLFLLTNTHGWFAYLWLP----------FIPLF 318 (411)
Q Consensus 249 tLR~gFI~~H~~p~~~~~FdFhkYi~RsLE~DFk~VVGIS~~lW~~vv~Flllnv~gw~~yfWls----------fiPli 318 (411)
..|+|+++.=..| |.++=.+.+. |+.++.+..+--++-+-..-.||-.+ ++|+.
T Consensus 71 l~~kgl~R~lf~P-----~~~~WW~Q~t-----------s~~if~~ll~LY~lQv~~v~lY~~~~~~~~v~~sEv~~Pi~ 134 (159)
T PF12129_consen 71 LTRKGLVRVLFFP-----FFSQWWIQQT-----------SPWIFMFLLLLYLLQVIAVVLYFIDPEPHVVSASEVFGPIC 134 (159)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHhheeecCccccCCHHHHHHHHH
Confidence 3588998886665 4444444443 44343333333333333334566555 89999
Q ss_pred HHHHHHHhHHHHHH
Q 015191 319 IILLVGAKLQVIIT 332 (411)
Q Consensus 319 l~L~VGtKLq~II~ 332 (411)
++|++||==-+|++
T Consensus 135 LmLlLg~VH~QIVS 148 (159)
T PF12129_consen 135 LMLLLGTVHCQIVS 148 (159)
T ss_pred HHHHHHHhhheeee
Confidence 99999986666654
No 19
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.44 E-value=1.8e+02 Score=26.59 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=35.7
Q ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcc
Q 015191 16 TWAVAAVFFVL-IAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELM---------LLGFISLLLTVLQEP 79 (411)
Q Consensus 16 TWaVA~Vc~v~-v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~ELM---------LLGFISLLLtv~q~~ 79 (411)
+|..|.+-.|. |+|..++- +|++-=- |+++.+..-|||+|.+|= .----+||=|..|++
T Consensus 7 ~W~~a~igLvvGi~IG~li~----Rlt~~~~-k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIA----RLTNRKL-KQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887765443 44444444 4444222 234578899999998763 223456777777776
No 20
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=20.92 E-value=50 Score=33.77 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=28.4
Q ss_pred HHhhcCCCCCCccchHHHHHHHHhhcccceeeechhH
Q 015191 255 IMAHLAPGSETKFDFQKYISRSLEEDFKDVVGITPIL 291 (411)
Q Consensus 255 I~~H~~p~~~~~FdFhkYi~RsLE~DFk~VVGIS~~l 291 (411)
|.-|..||| -.|| |||.-.||+-==+++||.+|=
T Consensus 39 v~~hGsPGS--H~DF-kYi~~~l~~~~iR~I~iN~PG 72 (297)
T PF06342_consen 39 VAFHGSPGS--HNDF-KYIRPPLDEAGIRFIGINYPG 72 (297)
T ss_pred EEecCCCCC--ccch-hhhhhHHHHcCeEEEEeCCCC
Confidence 456999999 5566 899999999989999998753
Done!