Query 015191
Match_columns 411
No_of_seqs 133 out of 248
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 57.4 16 0.00055 27.3 4.7 37 12-49 5-41 (54)
2 2knc_A Integrin alpha-IIB; tra 54.8 17 0.00057 27.1 4.4 37 12-49 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 48.9 22 0.00074 25.2 4.0 36 12-48 6-41 (42)
4 2knc_B Integrin beta-3; transm 34.7 84 0.0029 24.7 5.9 24 180-203 39-62 (79)
5 2jwa_A Receptor tyrosine-prote 23.0 65 0.0022 23.0 3.0 30 16-50 12-41 (44)
6 2uwj_E Type III export protein 22.7 41 0.0014 26.3 2.0 33 33-65 8-40 (70)
7 1rh4_A Right-handed coiled coi 19.2 67 0.0023 21.4 2.2 18 46-63 16-33 (35)
8 1uii_A Geminin; human, DNA rep 17.1 85 0.0029 25.3 2.8 14 44-57 33-46 (83)
9 1wlq_A Geminin; coiled-coil; 2 15.4 1E+02 0.0034 24.9 2.8 14 44-57 25-38 (83)
10 1zke_A Hypothetical protein HP 13.5 29 0.001 27.7 -0.8 18 50-67 65-82 (83)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=57.41 E-value=16 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=21.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 015191 12 EETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHK 49 (411)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~k 49 (411)
+..|.|.+.+-...-+++-.++=-++-++| ++||+++
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~~ 41 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPLK 41 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCS
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCc
Confidence 468999654333333333344556777887 7777765
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.75 E-value=17 Score=27.14 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=23.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 015191 12 EETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHK 49 (411)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~k 49 (411)
+..|.|.+.+-...-+++-.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 357999755444444444455556788888 7777765
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=48.88 E-value=22 Score=25.19 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=21.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 015191 12 EETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRH 48 (411)
Q Consensus 12 e~TPTWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~ 48 (411)
+..|.|.+.+-...-.++-.++=-++.++| ++||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 368999754443333333445556777877 666664
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.68 E-value=84 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=17.4
Q ss_pred HhhhhHHHHHHhhhchhccccCCc
Q 015191 180 TKMKKWKAWENETKTIEYQYYNDP 203 (411)
Q Consensus 180 ~Kir~Wk~WE~e~~~~~~~~~~dp 203 (411)
..-|.++++|+|-++...+..++|
T Consensus 39 ~DrrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 39 HDRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcccccCCCC
Confidence 336899999999887665555555
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.02 E-value=65 Score=23.01 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHhhhccch
Q 015191 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKK 50 (411)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~lgk~Lkk~~kk 50 (411)
|++.|.|..+++++-+.+ -++=|++||+++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 556666655443332222 234478877753
No 6
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.66 E-value=41 Score=26.34 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=22.7
Q ss_pred HHHHHHHHhhHhhhccchHHHHHHHHHHHHHHH
Q 015191 33 IEHLIHIIGKWLNNRHKKALFEAVEKVKAELML 65 (411)
Q Consensus 33 ~Er~lH~lgk~Lkk~~kkaL~~ALeKiK~ELML 65 (411)
+|..|+-.+.-..++=+--|..||-++|++|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555544444444455699999999999985
No 7
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=19.21 E-value=67 Score=21.39 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=13.4
Q ss_pred hccchHHHHHHHHHHHHH
Q 015191 46 NRHKKALFEAVEKVKAEL 63 (411)
Q Consensus 46 k~~kkaL~~ALeKiK~EL 63 (411)
-|-|-....||.|+|.|+
T Consensus 16 akikaeilaalkkikqei 33 (35)
T 1rh4_A 16 AKIKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334557888999999885
No 8
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=17.10 E-value=85 Score=25.30 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=8.9
Q ss_pred hhhccchHHHHHHH
Q 015191 44 LNNRHKKALFEAVE 57 (411)
Q Consensus 44 Lkk~~kkaL~~ALe 57 (411)
+..+||+||.+||+
T Consensus 33 lAE~RR~AL~eaL~ 46 (83)
T 1uii_A 33 VAEKRRKALYEALK 46 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44566667777765
No 9
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=15.42 E-value=1e+02 Score=24.91 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=8.7
Q ss_pred hhhccchHHHHHHH
Q 015191 44 LNNRHKKALFEAVE 57 (411)
Q Consensus 44 Lkk~~kkaL~~ALe 57 (411)
+..+||+||.+||+
T Consensus 25 lAE~Rr~AL~eaL~ 38 (83)
T 1wlq_A 25 VAEQRRKALYEALK 38 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556667777764
No 10
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=13.50 E-value=29 Score=27.75 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015191 50 KALFEAVEKVKAELMLLG 67 (411)
Q Consensus 50 kaL~~ALeKiK~ELMLLG 67 (411)
|...+||.|+|+|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 568899999999986544
Done!