Query 015191
Match_columns 411
No_of_seqs 133 out of 248
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 08:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 31.7 12 0.00085 25.6 2.1 18 364-381 29-46 (51)
2 d1q1ha_ a.4.5.41 (A:) Transcri 15.5 23 0.0016 27.0 1.0 9 304-312 73-81 (88)
3 d1zkea1 a.30.6.1 (A:1-79) Hypo 10.7 40 0.0029 24.8 1.0 15 50-64 63-77 (79)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 9.7 2E+02 0.015 22.9 5.6 24 16-39 155-178 (319)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 9.0 2.2E+02 0.016 20.5 5.2 36 24-59 8-43 (158)
6 d1j1va_ a.4.12.2 (A:) Chromoso 8.9 1.2E+02 0.0086 22.2 3.3 30 34-63 46-75 (94)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 8.7 99 0.0072 19.6 2.2 13 158-170 22-34 (37)
8 d2gola1 a.61.1.1 (A:7-107) HIV 7.8 53 0.0039 25.4 0.8 13 50-62 89-101 (101)
9 d1unda_ a.14.1.1 (A:) Advillin 7.6 27 0.002 22.3 -0.9 12 278-289 4-15 (36)
10 d1yu8x1 a.14.1.1 (X:42-76) Vil 7.5 27 0.002 22.2 -0.9 12 278-289 3-14 (35)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.70 E-value=12 Score=25.60 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhhHHH
Q 015191 364 RFILFLIHLVLFQNAFQL 381 (411)
Q Consensus 364 ~llL~lIhfiLFQNAFel 381 (411)
.++|.|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 2
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.54 E-value=23 Score=26.98 Aligned_cols=9 Identities=56% Similarity=1.726 Sum_probs=7.1
Q ss_pred CCceeeEee
Q 015191 304 HGWFAYLWL 312 (411)
Q Consensus 304 ~gw~~yfWl 312 (411)
.||++|+|-
T Consensus 73 ~gw~~Y~W~ 81 (88)
T d1q1ha_ 73 SGWFIYYWK 81 (88)
T ss_dssp CCCCEEEEE
T ss_pred CCcEEEEEE
Confidence 388888885
No 3
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=10.67 E-value=40 Score=24.84 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 015191 50 KALFEAVEKVKAELM 64 (411)
Q Consensus 50 kaL~~ALeKiK~ELM 64 (411)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 568899999999873
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.67 E-value=2e+02 Score=22.86 Aligned_cols=24 Identities=13% Similarity=0.468 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 015191 16 TWAVAAVFFVLIAVSVVIEHLIHI 39 (411)
Q Consensus 16 TWaVA~Vc~v~v~iSl~~Er~lH~ 39 (411)
.|.++.++.+.+.+.+++-....+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~ 178 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSK 178 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHHhhhh
Confidence 366677777777766665554443
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.00 E-value=2.2e+02 Score=20.53 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHH
Q 015191 24 FVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKV 59 (411)
Q Consensus 24 ~v~v~iSl~~Er~lH~lgk~Lkk~~kkaL~~ALeKi 59 (411)
.|+++|.++.==++=.+.++.++.+.+.....+.-+
T Consensus 8 VViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666777777655544444433
No 6
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=8.89 E-value=1.2e+02 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHHhhHhhhccchHHHHHHHHHHHHH
Q 015191 34 EHLIHIIGKWLNNRHKKALFEAVEKVKAEL 63 (411)
Q Consensus 34 Er~lH~lgk~Lkk~~kkaL~~ALeKiK~EL 63 (411)
...+-.+|+.|..|.-.+..+|..|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 346778899997665688999999998754
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.67 E-value=99 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 015191 158 IFIFVLAVFHVLY 170 (411)
Q Consensus 158 iFIFvLAv~HV~y 170 (411)
.+||||||..-.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999876555
No 8
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.84 E-value=53 Score=25.40 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHH
Q 015191 50 KALFEAVEKVKAE 62 (411)
Q Consensus 50 kaL~~ALeKiK~E 62 (411)
|.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 3457999999987
No 9
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.57 E-value=27 Score=22.34 Aligned_cols=12 Identities=58% Similarity=0.875 Sum_probs=10.4
Q ss_pred hhcccceeeech
Q 015191 278 EEDFKDVVGITP 289 (411)
Q Consensus 278 E~DFk~VVGIS~ 289 (411)
++||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 689999999985
No 10
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.49 E-value=27 Score=22.18 Aligned_cols=12 Identities=58% Similarity=0.974 Sum_probs=10.3
Q ss_pred hhcccceeeech
Q 015191 278 EEDFKDVVGITP 289 (411)
Q Consensus 278 E~DFk~VVGIS~ 289 (411)
++||+.|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 689999999985
Done!