BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015193
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/391 (87%), Positives = 371/391 (94%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTIYN+EGKKFALHLVPSGILNEDT CVIGNGVVVHLPGLF EIDGLE+NGVSC
Sbjct: 53 GGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSC 112
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
KGRILVSDRAHLLFDFHQE+DGLRE+ELAKSFIGTT+RGIGPAYSSKVIRNGIRV DLRH
Sbjct: 113 KGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRH 172
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQ 200
MDT PQKLDLLLSDAAARF G KYTP++LREEVE YKR+A+RLEP+ITDTVHF+N+SI+Q
Sbjct: 173 MDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQ 232
Query: 201 KRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVG 260
K+K+LVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRVG
Sbjct: 233 KKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVG 292
Query: 261 SGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320
SGPFPTE G GGD LRLAGQEFGTTTGRPRRCGWLD+VALK+ CQING +SLNLTKLDV
Sbjct: 293 SGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDV 352
Query: 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKG 380
LS+L EIQLGVAYK+ DGTPVKSFP DL LLE+L VEYEVLPGW+SDISSVRNYSDLPK
Sbjct: 353 LSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKA 412
Query: 381 AREFVERIEELVGVPINYIGVGPGRDALIYK 411
A+++VERIEELVGVPI+YIG+GPGRDALIYK
Sbjct: 413 AQQYVERIEELVGVPIHYIGIGPGRDALIYK 443
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/391 (80%), Positives = 350/391 (89%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTIYN+EGKKFALHLVPSGIL+E T+CV+GNG V+H+PG F EIDGL++NGVSC
Sbjct: 52 GGANAGHTIYNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSC 111
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
GRILVSDRAHLLFD HQ +DGLREAELA SFIGTT+RGIGP YSSKV RNG+RVCDLRH
Sbjct: 112 DGRILVSDRAHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRH 171
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQ 200
MDTF KLD+L DAAARF G KY+ +L+EEVE+YK+FAERLEPFI DTVH +NESI Q
Sbjct: 172 MDTFGDKLDVLFEDAAARFEGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQ 231
Query: 201 KRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVG 260
K+KILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRV+GDLIGVVKAYTTRVG
Sbjct: 232 KKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVG 291
Query: 261 SGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320
SGPFPTE+ G+ GD LR AG EFGTTTGRPRRCGWLD+VALKYCC ING SSLNLTKLDV
Sbjct: 292 SGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDV 351
Query: 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKG 380
LS LPEI+LGV+Y Q DG ++SFP DL LEQ++V YEVLPGW SDISSVR+YS+LP+
Sbjct: 352 LSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQA 411
Query: 381 AREFVERIEELVGVPINYIGVGPGRDALIYK 411
AR +VERIEEL GVP++YIGVGPGRDALIYK
Sbjct: 412 ARRYVERIEELAGVPVHYIGVGPGRDALIYK 442
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 274/396 (69%), Gaps = 13/396 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS- 79
GG NAGHT+ +GK++ HL+PSGI+N V IGNGVV+HLPGLF E + E G+
Sbjct: 65 GGNNAGHTVV-VDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKD 123
Query: 80 CKGRILVSDRAHLLFDFHQEIDGL----REAELAKSFIGTTRRGIGPAYSSKVIRNGIRV 135
+ R+++SDRAHL+FDFHQ +DGL R+A+ K+ IGTT++GIGP YSSK R G+R+
Sbjct: 124 WEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKN-IGTTKKGIGPTYSSKAARTGLRI 182
Query: 136 CDL-RHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFM 194
CDL D F + L + FP L+ + ++++ K FAER+ P + D V+FM
Sbjct: 183 CDLLSDFDEFSARFKNLAHQHQSMFPTLEID---VEGQLKRLKGFAERIRPMVRDGVYFM 239
Query: 195 NESI-AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
E++ +K+LVEG A +LDIDFGTYPFVTSS+ + GG+CTGLGI P+ +GD+ GVVK
Sbjct: 240 YEALHGPPKKVLVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVK 299
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AYTTRVG G FPTE + GD L+ G E+G TTGR RRCGWLD++ L+Y +NG ++L
Sbjct: 300 AYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTAL 359
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLD+L L EI++G++YK +G + FPA+ +L++++VEYE LPGW++D + R
Sbjct: 360 ALTKLDILDVLSEIKVGISYK-LNGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARK 418
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
+ DLP A+ +V +E +GV + ++GVG R+++I
Sbjct: 419 WEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMI 454
>pdb|2V40|A Chain A, Human Adenylosuccinate Synthetase Isozyme 2 In Complex
With Gdp
Length = 459
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/397 (47%), Positives = 272/397 (68%), Gaps = 13/397 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ + ++ HL+PSGI+N + IGNGVV+HLPGLF E + G
Sbjct: 65 GGNNAGHTVV-VDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGL 123
Query: 81 KG---RILVSDRAHLLFDFHQEIDGLREA---ELAKSFIGTTRRGIGPAYSSKVIRNGIR 134
+G R+++SDRAH++FDFHQ DG++E E A +GTT++GIGP YSSK R+G+R
Sbjct: 124 EGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLR 183
Query: 135 VCDL-RHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHF 193
+CDL D F ++ +L + + +P L+ + E++K K + E+++P + D V+F
Sbjct: 184 MCDLVSDFDGFSERFKVLANQYKSIYPTLEID---IEGELQKLKGYMEKIKPMVRDGVYF 240
Query: 194 MNESI-AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVV 252
+ E++ +KILVEG A +LDIDFGTYPFVTSS+ + GG+CTGLG+ P+ VG++ GVV
Sbjct: 241 LYEALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVV 300
Query: 253 KAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSS 312
KAYTTRVG G FPTE + G+ L+ G+EFG TTGR RRCGWLD+V LKY ING ++
Sbjct: 301 KAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTA 360
Query: 313 LNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVR 372
L LTKLD+L EI++GVAYK DG + PA+ +L +++V+Y+ LPGW +DIS+ R
Sbjct: 361 LALTKLDILDMFTEIKVGVAYK-LDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNAR 419
Query: 373 NYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
+ +LP A+ +V IE+ + +P+ +IGVG R+++I
Sbjct: 420 AFKELPVNAQNYVRFIEDELQIPVKWIGVGKSRESMI 456
>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Yersinia Pestis Co92
Length = 432
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 237/393 (60%), Gaps = 14/393 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ + +IGNGVV+ L E+ LEA GV
Sbjct: 36 GGHNAGHTLV-INGEKTVLHLIPSGILRENVISIIGNGVVLAPDALMKEMTELEARGVPV 94
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ +H +D RE IGTT RGIGPAY KV R G+RV DL +
Sbjct: 95 RERLLLSEACPLILPYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVSDLFN 154
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKR-------FAERLEPFITDTVHF 193
+TF KL ++ F + Y +E Y++ A+ L + D
Sbjct: 155 KETFAIKLKEIVE--YHNFQLVHY----YKEAAVDYQKVLDDVLAIADILTAMVVDVSEL 208
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++ + Q I+ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G+VK
Sbjct: 209 LDNARKQGELIMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGIVK 268
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+ + G+ LR G E+G TTGR RR GWLD+VA++ QIN LS
Sbjct: 269 AYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGF 328
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
+TKLDVL L E++L V Y+ DG V + P E ++ YE +PGW V+
Sbjct: 329 CMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKE 388
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGRD 406
+S LP+ A +++R+EEL GVPI+ I GP RD
Sbjct: 389 HSKLPQAALNYIQRVEELTGVPIDIISTGPDRD 421
>pdb|1P9B|A Chain A, Structure Of Fully Ligated Adenylosuccinate Synthetase
From Plasmodium Falciparum
Length = 442
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 244/396 (61%), Gaps = 12/396 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTI + KK+ALHL+P G+L ++ + V+GNG+V+H+ L EI E+ G
Sbjct: 48 GGANAGHTI-SVNDKKYALHLLPCGVLYDNNISVLGNGMVIHVKSLMEEI---ESVGGKL 103
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAK--SFIGTTRRGIGPAYSSKVIRNGIRVCDL 138
R+ +S++AH+LFD HQ ID ++E + K IGTT+RGIGP YS+K R GIR+ L
Sbjct: 104 LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTL 163
Query: 139 RHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI 198
++ + F L+ + +Y + +E+ + + +L I D + FMN ++
Sbjct: 164 KNFENFKNMYSKLIDHLMDLYNITEYDKE---KELNLFYNYHIKLRDRIVDVISFMNTNL 220
Query: 199 AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTR 258
+K+L+EG A MLDIDFGTYP+VTSS + GG+ +GLGI + + ++GVVK+Y TR
Sbjct: 221 ENNKKVLIEGANAAMLDIDFGTYPYVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTR 280
Query: 259 VGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKL 318
VG GPF TE+ G LR G E+GTTT RPRRCGWLD+ L Y IN + +NLTKL
Sbjct: 281 VGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKL 340
Query: 319 DVLSELPEIQLGVAYKQFDGTPV---KSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 375
DVLS L EI L V +K + +P + + E+ + YE GW+ DIS+ +
Sbjct: 341 DVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFD 400
Query: 376 DLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 411
+LP+ A++++ IE+ + PI +IGVGP R +I K
Sbjct: 401 ELPENAKKYILAIEKYLKTPIVWIGVGPNRKNMIVK 436
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 314 bits (805), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/392 (43%), Positives = 236/392 (60%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 35 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 93
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFD 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 154 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 207
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 208 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 267
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS
Sbjct: 268 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGF 327
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 328 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 387
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 388 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/392 (43%), Positives = 236/392 (60%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 36 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 94
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 95 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFD 154
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 155 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 208
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 209 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 268
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS
Sbjct: 269 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGF 328
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 329 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 388
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 389 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 420
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 314 bits (804), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/392 (43%), Positives = 236/392 (60%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 35 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 93
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFD 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 154 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 207
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 208 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 267
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS
Sbjct: 268 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGF 327
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 328 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 387
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 388 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 314 bits (804), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/392 (43%), Positives = 236/392 (60%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 35 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 93
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFD 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 154 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 207
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 208 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 267
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS
Sbjct: 268 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGF 327
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 328 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 387
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 388 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/392 (43%), Positives = 235/392 (59%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 35 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 93
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV G+RV DL
Sbjct: 94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVALRGLRVGDLFD 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 154 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 207
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 208 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 267
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS
Sbjct: 268 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGF 327
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 328 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 387
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 388 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/392 (43%), Positives = 235/392 (59%), Gaps = 14/392 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 35 GGHNAGHTLV-INGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPV 93
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 94 RERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFD 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRF-------AERLEPFITDTVHF 193
+TF +KL ++ F + Y + E Y++ A+ L + D
Sbjct: 154 KETFAEKLKEVME--YHNFQLVNY----YKAEAVDYQKVLDDTMAVADILTSMVVDVSDL 207
Query: 194 MNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVK 253
++++ + ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++K
Sbjct: 208 LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILK 267
Query: 254 AYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSL 313
AY+TRVG+GPFPTE+F + G+ L G EFG TTG RR GWLD VA++ Q+N LS
Sbjct: 268 AYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGLRRRTGWLDTVAVRRAVQLNSLSGF 327
Query: 314 NLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 373
LTKLDVL L E++L VAY+ DG V + P + ++ YE +PGW V++
Sbjct: 328 CLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKD 387
Query: 374 YSDLPKGAREFVERIEELVGVPINYIGVGPGR 405
S LP+ A +++RIEEL GVPI+ I GP R
Sbjct: 388 RSGLPQAALNYIKRIEELTGVPIDIISTGPDR 419
>pdb|3R7T|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Campylobacter Jejuni
Length = 419
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 18/394 (4%)
Query: 20 AGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79
AGG NAGHTI+ G ++ALHL PSG+L+ + +IGNGVVV L E E +
Sbjct: 38 AGGHNAGHTIW-VNGVRYALHLXPSGVLHPRCINIIGNGVVVSPEVLIAEXAQFE----N 92
Query: 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLR 139
KGR+ +SDRAHL H ID +E K+ IGTT +GIGP+Y+ K+ R G RV +L
Sbjct: 93 LKGRLYISDRAHLNLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELL 152
Query: 140 HMDTFPQKL-DLLLSDAAAR---FPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMN 195
PQ+L + L+ D A F L+ E + KRF E L P+ITDT +
Sbjct: 153 E----PQRLCEALIKDFEANKTFFEXLEIEIPSAEELLADLKRFNEILTPYITDTTRXLW 208
Query: 196 ESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAY 255
+++ + +++L+EG Q + LDID GTYP+VTSSS + G TGLG+ P+ G++IG+VKAY
Sbjct: 209 KALDEDKRVLLEGAQGSXLDIDHGTYPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAY 268
Query: 256 TTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNL 315
TRVG+G FPTE G+ G+++ G+E G +TGR RRCGW D VA++Y ++NGL +L+L
Sbjct: 269 ATRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSL 328
Query: 316 TKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 375
KLDVL +I++ AY ++ G + P+D LE ++ YE GW + +++Y
Sbjct: 329 XKLDVLDGFEKIKICRAY-EYKGXEIDYIPSD---LENVQPIYEEXDGWDK-VFGIKDYD 383
Query: 376 DLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
LP+ A++++ R+EEL GV + YI P RD I
Sbjct: 384 LLPENAKKYIARLEELAGVKVKYISTSPERDDTI 417
>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
Length = 452
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 222/400 (55%), Gaps = 15/400 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ GKK L L+PSGI+ E C IGNGVV+ LF EI LE G+S
Sbjct: 49 GGHNAGHTLIIG-GKKTILRLIPSGIMREGVACYIGNGVVLSPEALFKEIGELEEAGLSV 107
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+ +S+ L+ +H ID REA IGTT RGIGPAY KV R +RV DL
Sbjct: 108 RERLFISEATTLILPYHIAIDQAREARKGAGKIGTTGRGIGPAYEDKVGRRALRVQDLFD 167
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDV---LREEVEKYKRFAERLEPFITDTVHFMNES 197
TF +L L F +Y + ++ +A+RL P + D + E
Sbjct: 168 ARTFADRLRENLD--FHNFVLTQYLGGAAVDFQATLDTMLGYADRLRPMVADVSRRLYEE 225
Query: 198 IAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTT 257
R +L EG Q T+LDID GTYPFVTSS+ AG G G+ P+ + ++G+ KAY T
Sbjct: 226 NHAGRNLLFEGAQGTLLDIDHGTYPFVTSSNCVAGAAAAGAGVGPQKLNYILGITKAYCT 285
Query: 258 RVGSGPFPTEIF--------GQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQING 309
RVGSGPFP+E++ Q G L G+EFG+ TGRPRR GWLD AL+ QING
Sbjct: 286 RVGSGPFPSELYDADNPSRQDQIGITLANVGKEFGSVTGRPRRTGWLDAAALRRSIQING 345
Query: 310 LSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDIS 369
+S L +TKLDVL L E++L V YK DG P + + + YE GW+
Sbjct: 346 VSGLCMTKLDVLDGLDEVKLCVGYK-IDGEDADLLPRGAAEVARCEPVYETFGGWKESTV 404
Query: 370 SVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
+ ++ LP AR ++ R++E+ GVPI+ + GP RD I
Sbjct: 405 GINSWDALPANARAYLTRVQEVAGVPIDMVSTGPDRDETI 444
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 178/388 (45%), Gaps = 92/388 (23%)
Query: 22 GANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81
G NAGH++ GKK+A+ +P+G + +IG GV+V F+E++ L+ + K
Sbjct: 38 GTNAGHSVV-INGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEVFFHELEQLK--DFNVK 94
Query: 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHM 141
R+ + R ++ + H+++D R IGTT G GPA + +V+R + D++
Sbjct: 95 DRVGIDYRCAIIEEKHKQLD--RTNGYLHGKIGTTGSGCGPANADRVMRKAKQAKDVKE- 151
Query: 142 DTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQK 201
LEP++TD +N+++ +
Sbjct: 152 -----------------------------------------LEPYLTDVAQEINDALDEG 170
Query: 202 RKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGS 261
+LVEG Q L + +GTYP+VTS +A + +GI P V ++I V K++ TRVG+
Sbjct: 171 SLVLVEGTQGFGLSLYYGTYPYVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGA 230
Query: 262 GPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVL 321
GPFPTE+ + DRL L E+GT TGR RR GW D +Y +ING + L +T LD
Sbjct: 231 GPFPTEMPMEEADRLGLV--EYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLD-- 286
Query: 322 SELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGA 381
+ + V +Y LP+ A
Sbjct: 287 -----------------------------------------KYDKEAFGVTDYDKLPRKA 305
Query: 382 REFVERIEELVGVPINYIGVGPGRDALI 409
+EF+E IEE VGVP+ I GP + +I
Sbjct: 306 KEFIEEIEERVGVPVGLIKTGPELEHII 333
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 18/81 (22%)
Query: 210 QATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGS----GPFP 265
+A ++++ GT+PF S A TGL +V+ D A T RV GP
Sbjct: 373 KAEGVEVNVGTFPFAASGRAMAANDTTGL---VKVIAD------AKTDRVLGVHVIGPSA 423
Query: 266 TEIFGQGGDRLRLAGQEFGTT 286
E+ QG G EFGT+
Sbjct: 424 AELVQQGA-----IGMEFGTS 439
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 290 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 342
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 610 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 668
Query: 343 SFPADL 348
F L
Sbjct: 669 WFQRQL 674
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 290 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 342
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 1049 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 1107
Query: 343 SFPADL 348
F L
Sbjct: 1108 WFQRQL 1113
>pdb|3Q10|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q12|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate
Length = 287
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 146 QKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDT 190
+++D LL +AAA+ + +TPD E + R AE L+P D+
Sbjct: 223 RQIDALLEEAAAQLLRVGFTPD------ELFIRDAETLQPLTVDS 261
>pdb|4DXL|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abscessus, Bound To Cmp And Atp
pdb|4ED4|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abcessus, Bound To Atp
pdb|4EMD|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abcessus, Bound To Cmp And So4
Length = 318
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 180 AERLEPFITDTVHFMNESI-AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGL 238
A RL P + + + S+ + R+ L G A L V+ S P+ +CT
Sbjct: 227 ARRLAPLLGNELQAAAVSLNPELRRTLRAGESAGAL------AGIVSGSGPTCAFLCTSA 280
Query: 239 GIAPRVVGDLIGVVKAYTTRVGSGP 263
A +V +L G T RV SGP
Sbjct: 281 DDAVQVSAELAGAGVCRTVRVASGP 305
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 290 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 342
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 691 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 749
Query: 343 SFPADL 348
F L
Sbjct: 750 WFQRQL 755
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,543,292
Number of Sequences: 62578
Number of extensions: 559996
Number of successful extensions: 1306
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 27
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)