Query 015193
Match_columns 411
No_of_seqs 166 out of 1063
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0104 PurA Adenylosuccinate 100.0 4E-161 9E-166 1202.4 35.1 407 2-410 16-424 (430)
2 TIGR00184 purA adenylosuccinat 100.0 1E-158 3E-163 1204.0 36.3 407 2-410 12-419 (425)
3 PLN02513 adenylosuccinate synt 100.0 4E-157 9E-162 1194.8 38.1 410 2-411 17-426 (427)
4 PRK13786 adenylosuccinate synt 100.0 4E-157 8E-162 1192.7 37.1 406 2-411 15-423 (424)
5 PRK13787 adenylosuccinate synt 100.0 1E-156 3E-161 1188.8 36.6 405 2-411 16-422 (423)
6 PTZ00350 adenylosuccinate synt 100.0 3E-155 7E-160 1183.5 37.1 405 2-411 27-435 (436)
7 PRK13784 adenylosuccinate synt 100.0 3E-155 7E-160 1179.6 35.9 403 2-411 16-421 (428)
8 PRK01117 adenylosuccinate synt 100.0 8E-155 2E-159 1181.5 36.6 407 2-410 16-423 (430)
9 smart00788 Adenylsucc_synt Ade 100.0 4E-154 8E-159 1175.1 37.7 407 2-410 14-421 (421)
10 PRK13785 adenylosuccinate synt 100.0 1E-152 2E-157 1166.7 36.9 405 2-411 15-450 (454)
11 PF00709 Adenylsucc_synt: Aden 100.0 1E-152 2E-157 1167.2 24.1 407 2-410 14-421 (421)
12 PRK13783 adenylosuccinate synt 100.0 2E-149 4E-154 1130.9 36.3 390 2-411 15-404 (404)
13 PRK13788 adenylosuccinate synt 100.0 4E-147 8E-152 1114.1 35.3 380 2-410 16-399 (404)
14 KOG1355 Adenylosuccinate synth 100.0 8E-147 2E-151 1071.9 28.4 405 2-411 44-454 (455)
15 cd03108 AdSS Adenylosuccinate 100.0 3E-144 6E-149 1079.2 34.6 350 2-403 14-363 (363)
16 PTZ00351 adenylosuccinate synt 100.0 2E-139 3E-144 1078.8 34.5 400 2-410 184-707 (710)
17 PRK04293 adenylosuccinate synt 100.0 5E-127 1E-131 943.7 28.1 315 2-411 16-332 (333)
18 PF11181 YflT: Heat induced st 63.3 72 0.0016 26.7 9.1 60 58-125 4-63 (103)
19 PF13316 DUF4087: Protein of u 58.3 3.7 7.9E-05 35.1 0.3 9 291-299 7-15 (101)
20 PRK05414 urocanate hydratase; 55.4 95 0.0021 33.9 10.2 169 43-222 88-276 (556)
21 TIGR01228 hutU urocanate hydra 51.3 1.3E+02 0.0028 32.8 10.3 169 43-222 79-267 (545)
22 COG0552 FtsY Signal recognitio 50.5 14 0.00031 37.9 3.1 63 300-388 273-338 (340)
23 PF01175 Urocanase: Urocanase; 49.7 52 0.0011 35.8 7.2 163 49-222 86-266 (546)
24 PF00448 SRP54: SRP54-type pro 39.7 95 0.0021 29.1 6.7 17 306-322 138-154 (196)
25 COG2987 HutU Urocanate hydrata 31.9 5.7E+02 0.012 27.8 11.3 173 43-226 88-280 (561)
26 PRK04220 2-phosphoglycerate ki 28.5 91 0.002 31.7 4.8 89 114-209 99-198 (301)
27 PRK11372 lysozyme inhibitor; P 27.0 1.3E+02 0.0029 25.9 4.9 42 3-46 30-71 (109)
28 PRK12339 2-phosphoglycerate ki 26.7 84 0.0018 29.5 4.0 91 114-210 10-106 (197)
29 PF06279 DUF1033: Protein of u 24.5 45 0.00097 29.5 1.6 33 360-392 16-48 (120)
30 KOG4612 Mitochondrial ribosoma 23.5 33 0.00071 29.0 0.5 37 262-298 43-82 (105)
31 PF09864 MliC: Membrane-bound 22.4 1.3E+02 0.0027 23.3 3.7 38 8-46 1-39 (72)
32 PF13158 DUF3993: Protein of u 22.2 2.5E+02 0.0054 24.9 5.7 40 181-227 59-103 (122)
33 TIGR01761 thiaz-red thiazoliny 22.1 45 0.00098 34.3 1.3 83 112-209 5-98 (343)
34 COG0800 Eda 2-keto-3-deoxy-6-p 21.5 92 0.002 30.1 3.2 32 52-91 64-95 (211)
35 PF02541 Ppx-GppA: Ppx/GppA ph 21.5 77 0.0017 31.0 2.8 22 379-400 71-92 (285)
36 PF09358 UBA_e1_C: Ubiquitin-a 20.9 90 0.0019 27.4 2.8 27 378-404 42-68 (125)
37 KOG2505 Ankyrin repeat protein 20.9 34 0.00073 37.1 0.1 49 182-231 286-337 (591)
38 PF08905 DUF1850: Domain of un 20.4 1.9E+02 0.0041 23.7 4.5 31 9-40 60-90 (91)
39 cd03199 GST_C_GRX2 GST_C famil 20.3 92 0.002 27.7 2.7 21 376-396 107-127 (128)
40 PRK09004 FMN-binding protein M 20.2 1E+02 0.0022 27.5 3.0 29 375-403 60-92 (146)
No 1
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.3e-161 Score=1202.41 Aligned_cols=407 Identities=48% Similarity=0.842 Sum_probs=399.2
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCC-
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC- 80 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~- 80 (411)
|||+||+||..+|+|||||||+||||||+ +||++|+|||||||+|+|++.|+|||||||||++|++|++.|+++|++.
T Consensus 16 KGKIvD~L~~~~d~VvR~qGG~NAGHTvv-v~g~~~~LhLiPSGil~~~~~~vIGnGvVvdP~~L~~Ei~~L~~~g~~~~ 94 (430)
T COG0104 16 KGKIVDYLADRADVVVRYQGGHNAGHTVV-VNGEKYKLHLIPSGILRPGATLVIGNGVVVDPEVLLKEIEELEERGVDVV 94 (430)
T ss_pred CceeeeeeccCcCEEEEccCCCCCCcEEE-ECCEEEEEEeccccccCCCceEEEcCcEEECHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999984
Q ss_pred CCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhcc
Q 015193 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFP 160 (411)
Q Consensus 81 ~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~ 160 (411)
.+||+||+|||||+|||+++|+++|..+++++||||||||||||+||++|+||||+||+|++.|++||+.+++++|..+.
T Consensus 95 ~~rL~Is~~ahlIlpyH~~lD~~~E~~~~~~kIGTTgrGIGPaY~DKv~R~giRv~DL~d~~~l~~kle~~~~~~n~~l~ 174 (430)
T COG0104 95 RDRLRISDRAHLILPYHIELDRAREKALGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLV 174 (430)
T ss_pred cccEEEccCcccccHHHHHHhhhhhhhcCCCcccCCCCccChhhhhhHhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999998888889999999999999999999999999999999999999999999998877
Q ss_pred C-CCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccC
Q 015193 161 G-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLG 239 (411)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~G 239 (411)
. ++.++.++++++++|.+++++++||++|++.+|++|+++||+||||||||+|||+|||||||||||||+|+|+++|+|
T Consensus 175 ~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEGAQG~lLDidhGTYPyVTSSNttagg~~~gsG 254 (430)
T COG0104 175 KYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSG 254 (430)
T ss_pred HhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHcCCeEEEEcCccceecccCCcCcccccCCcchhheeccCC
Confidence 6 467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccc
Q 015193 240 IAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319 (411)
Q Consensus 240 i~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 319 (411)
++|++|++||||+|||+||||+||||||+++|.|++|++.|+|||+||||||||||||+|++|||+++||+|++||||||
T Consensus 255 vgP~~i~~ViGV~KAYtTRVG~GPFPTEl~de~ge~l~~~G~EyGttTGR~RRcGWfD~v~~r~A~~iNG~t~laiTKlD 334 (430)
T COG0104 255 VGPTKIDYVIGVFKAYTTRVGEGPFPTELFDEVGEKLREVGHEYGTTTGRPRRCGWFDAVLLRYAVRINGITGLAITKLD 334 (430)
T ss_pred CCccccceEEEEEEEeeccccCCCCCcccchHHHHHHhhcCceecccCCCCccccchhHHHHHHHHhhcCccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Q 015193 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYI 399 (411)
Q Consensus 320 vL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~i 399 (411)
||++|++||||++|++ ||+++++||++++.|++|+||||+||||+++++++++|++||+||++||++|||++|+||.+|
T Consensus 335 vLdgl~~ikiCv~Y~~-dG~~id~~P~~~~~~~~~~PiYe~~pGW~~~~~g~~~~~~LP~~A~~Yi~~iEE~~gvPV~ii 413 (430)
T COG0104 335 VLDGLDEIKICVAYEI-DGKRIDYFPADLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIEELVGVPVTII 413 (430)
T ss_pred hhcCCCcceeEEEEec-CCceeeecccchhhhhcCceeeeccCCCccccccccchHHcCHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcccccc
Q 015193 400 GVGPGRDALIY 410 (411)
Q Consensus 400 s~Gp~r~~~i~ 410 (411)
|+||+|+|||.
T Consensus 414 stGP~R~~ti~ 424 (430)
T COG0104 414 STGPEREDTII 424 (430)
T ss_pred ecCCChhheEE
Confidence 99999999985
No 2
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=100.00 E-value=1.2e-158 Score=1204.02 Aligned_cols=407 Identities=46% Similarity=0.807 Sum_probs=399.7
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+||||||+||+.|++||+.|+++|+++.
T Consensus 12 KGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~GvVidp~~l~~Ei~~L~~~g~~~~ 90 (425)
T TIGR00184 12 KGKIVDLLADKPDIVARYQGGHNAGHTIV-IDGVKYGLHLIPSGFLYPDAKLLIGNGVVVDPEVLLKEMEYLEKRGISVR 90 (425)
T ss_pred CchhehhhccCCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCeEEEcHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999877
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|++||+.+++++|..+..
T Consensus 91 ~rL~Is~rahli~p~H~~lD~~~E~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~~~n~~~~~ 170 (425)
T TIGR00184 91 DRLFVSYRCHLILPYHKKLDKAREKSKLAKKIGTTGKGIGPAYEDKVARSGLRVGDLLDDEAFAEKAKNILEYLNEQLVK 170 (425)
T ss_pred CCEEEeCCCCCCCCchHHHHHHhHHhcCCCCcCCCCCCcHHHHHHHhhccccchhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred C-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCC
Q 015193 162 L-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGI 240 (411)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi 240 (411)
+ +..+.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+|+
T Consensus 171 ~y~~~~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPfVTSS~t~agg~~~g~Gi 250 (425)
T TIGR00184 171 YYKDEGVDYEKKLDEYMKYAEELKPFVVDVSVELNEALDEGEKVLFEGAQGTMLDIDYGTYPYVTSSNTTAGGVATGVGI 250 (425)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHCCCeEEEEcchhhhhhhccCcCcCccCcCChHHHHHhccCC
Confidence 4 556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccc
Q 015193 241 APRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320 (411)
Q Consensus 241 ~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDv 320 (411)
+|+.|++||||+|||+||||+||||||+++++|+.||+.|+|||+||||||||||||+|++|||+++||+|+||||||||
T Consensus 251 ~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~ing~t~lalTkLDv 330 (425)
T TIGR00184 251 GPTKVDEVIGVFKAYTTRVGAGPFPTELSDEEGEKLGTKGAEFGTTTGRRRRCGWFDLVAARYACRLNGATQLALTKLDV 330 (425)
T ss_pred CccccceEEEEEEeccccccCCCCCcccchhHHHHHHhccCcccCcCCCCceeecchHHHHHHHHHHcCCCeEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEe
Q 015193 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 400 (411)
Q Consensus 321 L~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is 400 (411)
||+|++||||++|++ +|+.++.||+++..|++|+||||+||||++++++||+|++||++||+||++||+++|+||.|||
T Consensus 331 L~~~~~ikic~~Y~~-~g~~~~~~P~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pV~~is 409 (425)
T TIGR00184 331 LDGIDEIKVCVAYRM-KGEILELFPLDLKDLKGVEPIYETLPGWDKECTGVTEYSDLPENAKKYIERIEELTGVPVTIIS 409 (425)
T ss_pred cCCCCeeeEEEEEee-CCEEeeeCCCChhhhcccEEEEEEcCCCccccccCcchhhCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 015193 401 VGPGRDALIY 410 (411)
Q Consensus 401 ~Gp~r~~~i~ 410 (411)
+||+|+|||.
T Consensus 410 ~Gp~R~~~I~ 419 (425)
T TIGR00184 410 TGPEREQTID 419 (425)
T ss_pred cCCChHHeEE
Confidence 9999999986
No 3
>PLN02513 adenylosuccinate synthase
Probab=100.00 E-value=4e-157 Score=1194.83 Aligned_cols=410 Identities=78% Similarity=1.233 Sum_probs=399.6
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+.++|+||+|||||||+|+++++|+||||||+||+.|++||++|+++|+++.
T Consensus 17 KGKivD~La~~~d~VvR~qGG~NAGHTvv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~Ei~~L~~~Gv~~~ 96 (427)
T PLN02513 17 KGKLVDILAQHFDIVARCQGGANAGHTIYNDEGKKFALHLVPSGILNEKTTCVIGNGVVVHLPGLFEEIDGLESNGVSCE 96 (427)
T ss_pred CceeehhhccCCCEEEEcCCcCCCCceEEecCCeEEEEEecCccccCCCcceEECCcEEEcHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999339999999999999999999999999999999999999999999999876
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||||||+++|+++|++++.++||||||||||||+||++|.|||++||+|++.|++||+.+++++|.++..
T Consensus 97 ~rl~Is~rahli~P~H~~~D~~~E~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~~~~~~~~~ 176 (427)
T PLN02513 97 GRLLVSDRAHLLFDFHQEVDGLREAELAGSKIGTTKRGIGPAYSSKATRNGLRVGDLRHMDTFAEKLRELLADAAARFEG 176 (427)
T ss_pred CCEEEcCCCCcCChHHHHHHHhhHHhcCCCCcCCCCCCchHhhhhhhhccccchhhhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCCC
Q 015193 162 LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIA 241 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi~ 241 (411)
+..+...+++++++|++++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++++|+|+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~al~~gk~iLfEGAQG~lLDid~GtYP~VTSS~t~a~g~~~g~Gi~ 256 (427)
T PLN02513 177 FEYDASMVEEEVEAYKKFAERLEPFITDTVHYLNEAIQAGKKILVEGAQATMLDIDFGTYPFVTSSNPSAGGICTGLGIA 256 (427)
T ss_pred ccCCCccHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCcEEEEccchhhcccccCcCCccCCCCchHHHHhhccCCC
Confidence 75444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccccc
Q 015193 242 PRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVL 321 (411)
Q Consensus 242 p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDvL 321 (411)
|++|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||+|+|||||||||
T Consensus 257 p~~i~~ViGV~KAY~TRVG~GPFPTEl~~~~g~~lr~~G~E~GttTGRpRR~GwfD~v~lrya~~ing~t~lalTkLDvL 336 (427)
T PLN02513 257 PRKLGDIIGVVKAYTTRVGSGPFPTELFGELGDLLREAGQEFGTTTGRPRRCGWLDIVALKYSCQINGFTSLNLTKLDVL 336 (427)
T ss_pred ccccceEEEEEEeccccccCCCCCccccchHHHHHhhccCcccCcCCCCceeccchHHHHHHHHHhcCCCeEEEecceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEee
Q 015193 322 SELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGV 401 (411)
Q Consensus 322 ~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is~ 401 (411)
|++++||||++|++++|+.++.||++++.|++|+||||+||||++|++++++|++||+|||+||++||+++|+||.|||+
T Consensus 337 ~~~~~ikvc~~Y~~~~g~~~~~~P~~~~~l~~~~Pvye~~~GW~~~~~~~~~~~~LP~~a~~yi~~IE~~~g~pv~~is~ 416 (427)
T PLN02513 337 SGLPEIKIGVAYKTPDGKVVKSFPADLDTLEQVEVVYEVLPGWQEDISSVRNYDDLPAAAQAYVERIEELVGVPVHYIGV 416 (427)
T ss_pred CCCCeeEEEEEEEcCCCcEeccCCcchhhhccceEEEEEcCCCccccccCcchhhcCHHHHHHHHHHHHHHCCCEEEEEc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccC
Q 015193 402 GPGRDALIYK 411 (411)
Q Consensus 402 Gp~r~~~i~~ 411 (411)
||+|+|||.+
T Consensus 417 Gp~R~~~i~~ 426 (427)
T PLN02513 417 GPGRDALIVK 426 (427)
T ss_pred CCCHHHeEec
Confidence 9999999964
No 4
>PRK13786 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=3.9e-157 Score=1192.71 Aligned_cols=406 Identities=41% Similarity=0.694 Sum_probs=395.1
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCC-
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC- 80 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~- 80 (411)
|||+||+||..+|+|||||||+||||||+ ++|++|+|||||||+|+++ +|+|||||||||+.|++||+.|+++|+++
T Consensus 15 KGKivD~La~~~d~VvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~-~~vIG~GvVidp~~L~~Ei~~L~~~Gv~~~ 92 (424)
T PRK13786 15 KGKIVDLLAKDYDIVARFQGGDNAGHTVK-VGDEVYKLHLIPSGFLLDA-RVLIGPGVVLNPEVLAEEIDMLEKHGVKVD 92 (424)
T ss_pred CchhhhhhhcCCCEEEECCCcCCCCcEEE-ECCEEEEEEecCceecCCC-ceEECCCEEEcHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999 8999999999999999987 99999999999999999999999999986
Q ss_pred CCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhcc
Q 015193 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFP 160 (411)
Q Consensus 81 ~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~ 160 (411)
.+||+||+|||||||||+++|+++|..++ ++||||||||||||+||++|.|||++||+|++.|++||+.+++++|..+.
T Consensus 93 ~~rL~Is~rahli~P~H~~lD~~~E~~~g-~~IGTT~rGIGPaY~DK~~R~giR~~Dl~~~~~~~~kl~~~~~~~n~~~~ 171 (424)
T PRK13786 93 AEKLGIDAKTSIIMPYHIELDGLRESART-EKIGTTKRGIGFAYIDKIARDEVRMSDLVDKERLMRRLEELAPQKEKEIK 171 (424)
T ss_pred cCcEEEcCCCCcCChHHHHHhhhhHHhcC-CCCCCCCCCchHhHHHHhhCccceeehhcCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998 89999999999999999999999999999999999999999999998887
Q ss_pred CC-CCCC-CcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCcccccccc
Q 015193 161 GL-KYTP-DVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGL 238 (411)
Q Consensus 161 ~~-~~~~-~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~ 238 (411)
.+ +..+ .++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~v~Dt~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTSSntta~ga~~g~ 251 (424)
T PRK13786 172 ELGGDPSIVRDEALIDKYLELGRQLAPYITDVSYEINKALDEGKSVLAEGAQGTHLDVIHGTQKFVTSSSTIAGSACANL 251 (424)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHhhccccCHHHHHHHHHHcCCcEEEEecchhhhccccCcCCccccCCcchhhhhhcc
Confidence 64 3333 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecc
Q 015193 239 GIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKL 318 (411)
Q Consensus 239 Gi~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTkl 318 (411)
|++|..|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|++|||+++||+|+||||||
T Consensus 252 Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGRpRR~GwlD~v~lrya~~ing~t~lalTkL 331 (424)
T PRK13786 252 GVGPTRVDNVLGIVKAYITRVGEGPLPTELKDEAGEHLQDVGGEFGTTTGRPRRCGWFDLPLLKKAIYLNGYTEIALTKL 331 (424)
T ss_pred CCCccccceEEEEEEeecccccCCCCCcccchHHHHHHhhccCcccCcCCCCcccccchHHHHHHHHHHcCCCeEEeeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEE
Q 015193 319 DVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINY 398 (411)
Q Consensus 319 DvL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~ 398 (411)
||||++++||||++|++ +|+.+++||++++.|++|+|||++||||++|+++||+|++||++||+||++||+++|+||.|
T Consensus 332 DvL~~~~~ikvc~~Y~~-~g~~~~~~p~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE~~~gvpv~~ 410 (424)
T PRK13786 332 DVLTGLDPIKICVGYEL-DGEILDYPPELTSDLARCVPVYEELEGWSTDLTEVKAYEDLPENARNYVERLEELMGVPIKY 410 (424)
T ss_pred cccCCCCceeEEEEEee-CCEEcccCCcChhhhcccEEEEEecCCCccccccCcchhhcCHHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCccccccC
Q 015193 399 IGVGPGRDALIYK 411 (411)
Q Consensus 399 is~Gp~r~~~i~~ 411 (411)
||+||+|+|||.+
T Consensus 411 is~Gp~R~~~I~~ 423 (424)
T PRK13786 411 ISVGPGREQTFKK 423 (424)
T ss_pred EEcCCCHHHhhcc
Confidence 9999999999964
No 5
>PRK13787 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1.2e-156 Score=1188.81 Aligned_cols=405 Identities=42% Similarity=0.775 Sum_probs=395.1
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ ++|+||+|||||||+|+++++|+||||||+||++|++||+.|+++|+++.
T Consensus 16 KGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~GvVi~p~~L~~Ei~~L~~~Gv~~~ 94 (423)
T PRK13787 16 KAKVIDFLSKDTDIIVRYQGGANAGHTVV-VHGKKYVFHLVPSGVIYDQTICVIGNGVVLDPLFFIEECDRLQKEGFPVK 94 (423)
T ss_pred CchhhhhhcccCCEEEECCCcCCCCcEEE-ECCEEEEEEecCccccCCCccEEecCcEEECHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999876
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHh-cCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhcc
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAEL-AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFP 160 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~-g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~ 160 (411)
+||+||+|||||||||+++|+++|.++ +.++||||||||||||+||++|.|||++||+|+ .|++||+.+++.+|..+.
T Consensus 95 ~rl~Is~rahli~P~H~~lD~~~E~~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~-~~~~kl~~~~~~~n~~~~ 173 (423)
T PRK13787 95 DKLLLSDACHLLFPYHSQIDSARETTSSQEHKIGTTKKGIGICYADKMMRTGLRVGDLLDK-SYKRRLKHLVDEKNRELD 173 (423)
T ss_pred CCEEEeCCccCcCchHHHHhhhhHHhhcCCCccCCCCCCchHhhhhhhhcccccHHHhcCH-HHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998 688999999999999999999999999999999 999999999999998877
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccC
Q 015193 161 GL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLG 239 (411)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~G 239 (411)
.+ +..++++++++++|++++++|+|||+|+..+|++|+++||+||||||||+|||+|||||||||||||+++|+|+|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPyVTSSnt~agga~~g~G 253 (423)
T PRK13787 174 KLYGMPPVSYNDINDGLKFFLSKVGKNIINTAYYLDTELKKGKRVLLEGAQGTGLDVDFGTYPYVTSSNPTTGGALIGTG 253 (423)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEechhhhhhcccCcCCCcCCCCchhhhhhhccC
Confidence 64 55667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccc
Q 015193 240 IAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319 (411)
Q Consensus 240 i~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 319 (411)
++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|+||||+++||+|+|||||||
T Consensus 254 i~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~G~tTGRpRR~GWlD~v~lrya~~ing~t~lalTkLD 333 (423)
T PRK13787 254 ISFQHLKHVIGITKAYTTRVGEGPFPTELLGEAGEVLRQKGGEFGATTGRPRRCGWFDVEMLKHSVRINGITSIALTKID 333 (423)
T ss_pred CCccccceEEEEEEeccccccCCCCCccccchHHHHHHhhcCccCCccCCCceeecchHHHHHHHHHhcCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Q 015193 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYI 399 (411)
Q Consensus 320 vL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~i 399 (411)
|||++++||||++|++ +|+++++||++ .|++|+||||+||||++|+++||+|++||++||+||++||+++|+||.||
T Consensus 334 vL~~~~~ikvc~~Y~~-~G~~~~~~P~~--~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pi~~i 410 (423)
T PRK13787 334 ILSDYDTIPVAVGYKL-NGKTLDCFPSQ--GLEKVEPLYEEFPGWKDDISGINEFQKLPEKCKNYISALEKWIGVKINLV 410 (423)
T ss_pred ccCCCCceeEEEEEee-CCeEeccCChh--hhcCceEEEEECCCCccccccCCchhhcCHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999 99999999997 89999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccC
Q 015193 400 GVGPGRDALIYK 411 (411)
Q Consensus 400 s~Gp~r~~~i~~ 411 (411)
|+||+|+|||..
T Consensus 411 s~Gp~R~~~I~~ 422 (423)
T PRK13787 411 STGPDRKDTIIG 422 (423)
T ss_pred EcCCChhheEec
Confidence 999999999863
No 6
>PTZ00350 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=3.1e-155 Score=1183.50 Aligned_cols=405 Identities=53% Similarity=0.927 Sum_probs=396.0
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+||||||+||+.|++||+.|+++|+++.
T Consensus 27 KGKivD~La~~~d~VvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~GvVidp~~L~~Ei~~L~~~Gv~~~ 105 (436)
T PTZ00350 27 KGKLVDILSEKADIVARFNGGANAGHTIV-VDGKKYALHLLPCGILYPNCINVLGNGVVIHLPSLLEEIEQLTKKGINLL 105 (436)
T ss_pred CchhhhhhccCCCEEEEeCCcCCCCcEEE-ECCEEEEEEeCCccccCCCcceEECCcEEEcHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999877
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHh--cCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhc
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAEL--AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARF 159 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~--g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~ 159 (411)
+||+||+|||||||||+++|+++|..+ +.++||||||||||||+||++|.|||++||+|++.|++||+.++++++..+
T Consensus 106 ~rL~Is~rahli~P~H~~lD~~~E~~~~~g~~~iGTT~rGIGPaY~dk~~R~giR~~Dl~~~~~~~~kl~~~~~~~~~~~ 185 (436)
T PTZ00350 106 GRLYISDRAHLVFDLHQAIDGIQESEKGKGGTQIGTTKRGIGPCYSTKASRTGLRVGDLLNFETFEKKYRKLVEKLQEQY 185 (436)
T ss_pred CCEEEcCCCCcCChHHHHHHhhhhhhhhcCCCCcCCCCCCchHhhhhhhhccccchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999984 788999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccC
Q 015193 160 PGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLG 239 (411)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~G 239 (411)
..+ +.++++++++|++++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+|
T Consensus 186 ~~~---~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYPfVTSSnt~a~ga~~g~G 262 (436)
T PTZ00350 186 NIE---EYDAEEELERYKGYAEKLKDMIVDTVYFMNKAIKEGKRVLVEGANATMLDIDFGTYPYVTSSNTTVGGVCTGLG 262 (436)
T ss_pred ccc---CCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCcEEEEechhhhhhcccCcCCCcCCCCchhhhhhhccC
Confidence 765 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccc
Q 015193 240 IAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319 (411)
Q Consensus 240 i~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 319 (411)
++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|++|||+++||+|+|||||||
T Consensus 263 i~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~g~E~GttTGRpRR~Gw~D~v~lrya~~ing~t~lalTkLD 342 (436)
T PTZ00350 263 IPPNAIILVIGVVKAYTTRVGEGPFPTELFDENGDYLRKKGHEYGTTTGRPRRCGWLDIPALRYVQMINGFDSINLTKLD 342 (436)
T ss_pred CCccccceEEEEEEeccccccCCCCCCcCchHHHHHHHhccCcccCcCCCCceeccchHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEeeeecCCCce--eccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeE
Q 015193 320 VLSELPEIQLGVAYKQFDGTP--VKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPIN 397 (411)
Q Consensus 320 vL~~~~~ikIc~~Y~~~~g~~--~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~ 397 (411)
|||++++||||++|++ +|+. +++||+++..|++|+|||++||||++|+++||+|++||++|++||++||+++|+||+
T Consensus 343 vL~~~~~ikvc~~Y~~-~g~~~~~~~~p~~~~~l~~~~Pvye~~~GW~~~~~~~r~~~~LP~~a~~yi~~iE~~~g~pV~ 421 (436)
T PTZ00350 343 VLSGLKEIKICVNYKN-KGTGLEIGRYPSSIEELEEYEPVYETMPGWKTDISKCKTFEELPENAQKYVLFIEELLGVPIV 421 (436)
T ss_pred ccCCCCceEEEEEEEe-CCEEeccccCCCChhHHhccEEEEEEcCCCccccccCcchhhcCHHHHHHHHHHHHHHCCCEE
Confidence 9999999999999999 9999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCccccccC
Q 015193 398 YIGVGPGRDALIYK 411 (411)
Q Consensus 398 ~is~Gp~r~~~i~~ 411 (411)
+||+||+|+|||.+
T Consensus 422 ~is~Gp~R~~~I~~ 435 (436)
T PTZ00350 422 WIGVGPNRENMIVK 435 (436)
T ss_pred EEEcCCCHHHeEec
Confidence 99999999999974
No 7
>PRK13784 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=3.4e-155 Score=1179.60 Aligned_cols=403 Identities=37% Similarity=0.677 Sum_probs=391.7
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCC-
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC- 80 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~- 80 (411)
|||+||+||..+|+|||||||+||||||+ ++|+||+|||||||+|+++++|+|||||||||+.|++||+.|+++|+++
T Consensus 16 KGKivD~La~~~d~VvR~qGG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~vIG~GvVi~p~~L~~Ei~~L~~~Gv~~~ 94 (428)
T PRK13784 16 KGKIADTLAEKADLVVRYQGGNNAGHTLV-VNGKKTFLHLIPSGVLHQHTKCVIGHGVVLDPVALDEEITRLQAKGIAIS 94 (428)
T ss_pred cchhhhhhcccCCEEEEeCCcCCcCcEEE-ECCEEEEEeecCceecCCCceEEECCcEEEcHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999 8999999999999999999999999999999999999999999999986
Q ss_pred CCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhcc
Q 015193 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFP 160 (411)
Q Consensus 81 ~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~ 160 (411)
.+||+||+|||||||||+++|+++|..++ ++||||||||||||+||++|.|||++||+|++.|++||+.+++++|..+.
T Consensus 95 ~~rL~Is~rahli~p~H~~lD~~~E~~~~-~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~~~n~~~~ 173 (428)
T PRK13784 95 AENLFVSESCTIITSYHKLLDAVRESNTS-EKIGTTGKGIGPAYEDKVSRKGIKFKHLFDKDLLRSRLAISLAEKETLFR 173 (428)
T ss_pred CCCEEEcCCCCcCChHHHHHhhhhHHhcC-CCCCCCCCcchHhHHHHHhcccchhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999887 89999999999999999999999999999999999999999999998888
Q ss_pred CC-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccC
Q 015193 161 GL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLG 239 (411)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~G 239 (411)
.+ +.++.++++++++|.+++++|+|||+|+..+|++|+++||+||||||||+|||+|||||||||||||+++|+|+|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~p~v~Dt~~~l~~a~~~gk~vLfEGAQG~lLDid~GTYPyVTSSntta~ga~~g~G 253 (428)
T PRK13784 174 DLYKVEYPTLEQEFDKLFALGQKLKQYAADTFSIIDQAIAAGKNVVYEGAQGVLLDVDYGTYPFVTSSNTSVAGVYSGAT 253 (428)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHcCCcEEEEeccceeeccccCcCCcccCCCcchhhhhhccC
Confidence 64 44567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccc
Q 015193 240 IAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319 (411)
Q Consensus 240 i~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 319 (411)
++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||+|+|||||||
T Consensus 254 i~p~~i~~ViGV~KAYtTRVG~GPFpTEl~~e~g~~lr~~G~E~GttTGRpRR~GWlD~v~lrya~~ing~t~lalTkLD 333 (428)
T PRK13784 254 TAGHGLDHVIGITKAYTTRVGEGPFPTELFDDVGKFIQHKGGEIGVTTGRIRRCGWLDLPLLKYSAKCSNLTSIALTKVD 333 (428)
T ss_pred CCCcccceEEEEEEeccccccCCCCCcccchHHHHHHHHcCceecccCCCCcccccchHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEeeeecCCCceecc-CCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEE
Q 015193 320 VLSELPEIQLGVAYKQFDGTPVKS-FPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINY 398 (411)
Q Consensus 320 vL~~~~~ikIc~~Y~~~~g~~~~~-~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~ 398 (411)
||+++++||||++|++ +|+.++. || +. .+++|+||||+||||+ +++|++|++||+|||+||++||+++|+||.|
T Consensus 334 vL~~~~~ikic~~Y~~-~g~~~~~~~P-~~-~~~~~~pvYe~~~GW~--~~~~~~~~~LP~~a~~Yi~~iE~~~g~pi~~ 408 (428)
T PRK13784 334 VLSDMDTLKVCIGYKY-EGKEIYCAYP-GI-DLYKVEPILVEMEPFS--IDETVTKDNMPAALKTYLKTIENHVGIPISS 408 (428)
T ss_pred ccCCCCcceEEEEEEe-CCEEecccCC-hh-hhccceEEEEecCCcc--ccCcCchHHcCHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999 9999987 99 55 8999999999999998 8999999999999999999999999999999
Q ss_pred EeeCCCccccccC
Q 015193 399 IGVGPGRDALIYK 411 (411)
Q Consensus 399 is~Gp~r~~~i~~ 411 (411)
||+||+|+|||.+
T Consensus 409 is~Gp~R~~~I~~ 421 (428)
T PRK13784 409 LAYGPSREQILFF 421 (428)
T ss_pred EECCCChHHEEEe
Confidence 9999999999864
No 8
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=7.6e-155 Score=1181.49 Aligned_cols=407 Identities=50% Similarity=0.851 Sum_probs=398.8
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ .||+||+|||||||+|+|+++|+||||||+||++|++||++|+++|++..
T Consensus 16 KGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhllPSGil~~~~~~viG~GvVv~p~~L~~Ei~~l~~~g~~~~ 94 (430)
T PRK01117 16 KGKIVDLLSERADVVVRFQGGHNAGHTLV-IDGKKYKLHLIPSGILRPGKTCVIGNGVVLDPEALLKEIDELEARGVDVR 94 (430)
T ss_pred CceeeeeecccCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCccEEECCeEEECHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999876
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|++||+.++++++..+..
T Consensus 95 ~rL~Is~ra~li~p~H~~lD~~~E~~rg~~~iGTT~rGIGpay~dk~~R~gir~~Dl~~~~~l~~kl~~~~~~~~~~~~~ 174 (430)
T PRK01117 95 ERLRISERAHLILPYHRALDKAREKARGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETFAEKLEENLEYKNFLLTK 174 (430)
T ss_pred CCEEEeCCCCCCCchHHHHhhhhHHhcCCCCCCCCCCCchHHHHHhhhcccccHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998999999999999999999999999999999999999999999999988876
Q ss_pred C-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCC
Q 015193 162 L-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGI 240 (411)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi 240 (411)
+ +.++.+++++++++.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTSS~tt~~g~~~g~Gi 254 (430)
T PRK01117 175 YYGAEAVDFEEILDEYLEYAERLKPYVTDTSLLLNDALKAGKRVLFEGAQGTLLDIDHGTYPFVTSSNTTAGGAATGSGV 254 (430)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHCCCeEEEEechhhhhccccCcCCCcCCcCchhhhhhhccCC
Confidence 4 455677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccc
Q 015193 241 APRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320 (411)
Q Consensus 241 ~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDv 320 (411)
+|++|++||||+|||+||||+||||||+++++++.||+.|+|||+||||||||||||+|++|||+++||+|+||||||||
T Consensus 255 ~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~ing~~~lalTkLDv 334 (430)
T PRK01117 255 GPTKIDYVLGIAKAYTTRVGSGPFPTELFDEVGEHLRERGHEFGTTTGRPRRCGWFDAVALRYAVRVNGLTGLALTKLDV 334 (430)
T ss_pred CCcccceEEEEEEcCCCcccCCCCCCcCChHHHHHHhhccCeecccCCCcceeecchHHHHHHHHHhcCCCeEEEeCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEe
Q 015193 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 400 (411)
Q Consensus 321 L~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is 400 (411)
||++++||||++|++ +|++++.||+++..|++|+|||++||||++|+++||+|++||++||+||++||+++|+||.|||
T Consensus 335 L~~~~~ikic~~Y~~-~g~~~~~~P~~~~~l~~~~Pvye~~~GW~~~~~~~r~~~~LP~~a~~yi~~iE~~~g~pv~~is 413 (430)
T PRK01117 335 LDGLEEIKICVAYEL-DGKRIDYFPASLEDLARCEPIYEELPGWSESTTGVRSFDDLPENARKYIKRIEELTGVPISIIS 413 (430)
T ss_pred cCCCCceeEEEEEee-CCEEeeeCCCChhhhcccEEEEEECCCCccccccCcchhhcCHHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 015193 401 VGPGRDALIY 410 (411)
Q Consensus 401 ~Gp~r~~~i~ 410 (411)
+||+|+|||.
T Consensus 414 ~Gp~r~~~I~ 423 (430)
T PRK01117 414 TGPDRDQTII 423 (430)
T ss_pred cCCChHHEEE
Confidence 9999999986
No 9
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=100.00 E-value=3.6e-154 Score=1175.07 Aligned_cols=407 Identities=52% Similarity=0.887 Sum_probs=399.2
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ .+|+||+|||||||+|+|+++|+||||||+||+.|++||+.|+++|+++.
T Consensus 14 KGKivD~La~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhllPSGil~~~~~~vig~GvVv~p~~L~~Ei~~L~~~Gi~~~ 92 (421)
T smart00788 14 KGKIVDYLAEKADVVVRFQGGNNAGHTVV-VGGKKYKLHLLPSGILNPNKKCVIGNGVVIDPEALFKEIDQLEAKGVDVR 92 (421)
T ss_pred CceeeeeccccCCEEEEccccCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCcEEEcHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999877
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||+|||+++|+++|.++++.+||||||||||||+||++|.|||++||+|++.|++||+.++++++..+..
T Consensus 93 ~rL~Is~ra~li~p~H~~lD~~~E~~~g~~~iGTT~rGIGpay~dk~~R~gir~~Dl~~~~~~~~kl~~~~~~~~~~l~~ 172 (421)
T smart00788 93 DRLFISDRAHLILPYHIALDKLREKARGKKKIGTTGRGIGPAYEDKVARRGIRVGDLFDEDVFREKLEELLDYKNFLLKK 172 (421)
T ss_pred CCEEEcCCCCCCChHHHHHhhhhHHhcCCCCCCCCCCCcHHHHHHHhhccCcchhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998999999999999999999999999999999999999999999999988876
Q ss_pred C-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCC
Q 015193 162 L-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGI 240 (411)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi 240 (411)
+ +.++.+++++++++.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi 252 (421)
T smart00788 173 LYGAEPVDVEEILEELLEYAERLKPYVVDVSELLNDALKAGKKVLFEGAQGTLLDIDHGTYPYVTSSNTTAGGAATGAGI 252 (421)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHhccceecHHHHHHHHHHCCCeEEEEeCcHhhhccccCcCCCccCccchhhhhhhccCC
Confidence 5 556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccc
Q 015193 241 APRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320 (411)
Q Consensus 241 ~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDv 320 (411)
+|++|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||+|+||||||||
T Consensus 253 ~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~ing~~~lalTkLDv 332 (421)
T smart00788 253 GPTRIDYVIGVVKAYTTRVGEGPFPTELFDETGEKLRERGHEFGTTTGRPRRCGWFDAVLLRYAVRINGITGLALTKLDV 332 (421)
T ss_pred CccccceEEEEEEeccccccCCCCCcccChHHHHHHhhcCCeeccCCCCCcccccchHHHHHHHHHhcCCCeEEEECcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEe
Q 015193 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 400 (411)
Q Consensus 321 L~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is 400 (411)
||+|++||||++|++ +|++++.||.+.+.|++|+|||++||||++++++||+|++||++|++||++||+++|+||+|||
T Consensus 333 L~~~~~ikvc~~Y~~-~g~~~~~~P~~~~~l~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pv~~is 411 (421)
T smart00788 333 LDGLDEIKVCVAYKL-DGKEIDYFPADLEDLERCEPIYETLPGWKEDTTGVRSYEDLPENAKKYIERIEELVGVPVSLIS 411 (421)
T ss_pred cCCCCceeEEEEEec-CCEEEeeCCCChhhhcccEEEEEECCCCccccccccchhhcCHHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 015193 401 VGPGRDALIY 410 (411)
Q Consensus 401 ~Gp~r~~~i~ 410 (411)
+||+|+|||.
T Consensus 412 ~Gp~r~~~i~ 421 (421)
T smart00788 412 TGPDREQTIV 421 (421)
T ss_pred cCCCHHhhcC
Confidence 9999999984
No 10
>PRK13785 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1.1e-152 Score=1166.74 Aligned_cols=405 Identities=37% Similarity=0.691 Sum_probs=391.7
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+|||||..+|+|||||||+||||||+ ++|+||+|||||||+|++ +.|+|||||||||+.|++||+.|+++|+++
T Consensus 15 KGKivD~La~~~dvVvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~-~~~vIG~GvVvdp~~L~~Ei~~L~~~Gv~~- 91 (454)
T PRK13785 15 KGGVVDLYGDAADVVVRYQGGDNAGHTVV-HGGEEYKLSLVPSGAVRG-KIGVLGNGCVVNPETLFDEIDALRERGLDP- 91 (454)
T ss_pred CceeeeecccCCCEEEEcCCcCCcCcEEE-ECCEEEEEeecCCCccCC-CceEECCcEEEcHHHHHHHHHHHHhcCCCc-
Confidence 99999999999999999999999999999 899999999999999996 889999999999999999999999999984
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHh--cCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhc
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAEL--AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARF 159 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~--g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~ 159 (411)
||+||+|||||||||+++|+++|..| +.++||||||||||||+||++|+|||++||+|++.|++||+.+++++|.++
T Consensus 92 -~l~Is~rahli~P~H~~lD~~~E~~r~~g~~~IGTT~rGIGPaY~DK~~R~giR~~Dl~~~~~~~~kl~~~~~~~n~~~ 170 (454)
T PRK13785 92 -DVRVAERAHVILPYHRVLDGIEEEAKSDSDLEVGTTGRGIGPTYEDKAGRRGVRVGDLLDPDVLRDRLEYVVPQKRALA 170 (454)
T ss_pred -cEEEeCCCcccCHhHHhhhHHhHHhhccCCCccCCCCCCchhhhhhhhhccccchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 568999999999999999999999999999999999999999999999888
Q ss_pred cCC-CC------CCCcHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCC
Q 015193 160 PGL-KY------TPDVLREEVEKYKRFAERLEP--FITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPS 230 (411)
Q Consensus 160 ~~~-~~------~~~~~~~~~~~~~~~~~~l~~--~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~ 230 (411)
..+ +. .+.++++++++|.+++++|+| ||+|+..+|++++++||+||||||||+|||+|||||||||||||+
T Consensus 171 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~d~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPyVTSSnt~ 250 (454)
T PRK13785 171 EDVYGLDASETPEAFDVDALFEEYREYGERLAEEDMTVNAGDFLAERIDDGDNVMLEGAQGTSIDIDHGNYPYVTSSNPT 250 (454)
T ss_pred HHHhCccccccccCCCHHHHHHHHHHHHHHhCccceeccHHHHHHHHHHcCCeEEEEecchhhhccccCcCCccCCCCch
Confidence 754 32 256789999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccCe--EEEEEeecccccCCCCCCCccCC---------------CccchhhhccCCCCCCCCCCCcc
Q 015193 231 AGGICTGLGIAPRVVGD--LIGVVKAYTTRVGSGPFPTEIFG---------------QGGDRLRLAGQEFGTTTGRPRRC 293 (411)
Q Consensus 231 ~~g~~~g~Gi~p~~i~~--viGV~KAY~TRVG~GPfpTE~~~---------------~~g~~lr~~g~E~G~tTGRpRR~ 293 (411)
++|+|+|+|++|++|++ ||||+|||+||||+||||||+++ ++++.||+.|+|||+||||||||
T Consensus 251 a~ga~~g~Gi~p~~i~~~~ViGV~KAY~TRVG~GPFPTEl~~~~~~~~~~~~~~~~~e~g~~lr~~G~E~GttTGRpRR~ 330 (454)
T PRK13785 251 AGGAATGTGLGPTVVGQGEVVGIVKAYLSRVGSGPLPTELGGVEGDTPDEGGRPDEEELATYIREEGGEYGTVTGRPRRV 330 (454)
T ss_pred hhhhhhccCCCcccccCceEEEEEEeecccccCCCCCcccccccccccccccccchHHHHHHHhhcCCcccccCCCCccc
Confidence 99999999999999976 99999999999999999999999 89999999999999999999999
Q ss_pred ccchHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcc-cccccC
Q 015193 294 GWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQS-DISSVR 372 (411)
Q Consensus 294 GwlD~v~lrya~~ing~~~lalTklDvL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~-~~~~~~ 372 (411)
||||+|++|||+++||+|+||||||||||++++||||++|++ +|++++.||++.+.|++|+||||+||||++ ++++++
T Consensus 331 GWlD~v~lryA~~inG~t~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~P~~~~~l~~~~PvYe~~~GW~~~~~~~~~ 409 (454)
T PRK13785 331 GWLDMPMLRHAARASGFTGLAINHIDVLAGLDEVKVGHSYEL-DGEELLTMPATTERWARCEPNFRSFDGWPEVDWAAVA 409 (454)
T ss_pred ccchHHHHHHHHHhcCCCeEEEecccccCCCCceeEEEEEee-CCEEcccCCCChhhhcccEEEEEecCCcCcCcccccc
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999 899998
Q ss_pred C--CCCCCHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 015193 373 N--YSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 411 (411)
Q Consensus 373 ~--~~~LP~~a~~yi~~ie~~~gvpv~~is~Gp~r~~~i~~ 411 (411)
+ |++||+||++||++||+++|+||.|||+||+|+|||.+
T Consensus 410 ~~~~~~LP~~a~~yi~~iE~~~g~pv~~is~Gp~R~~~i~~ 450 (454)
T PRK13785 410 EEGYDALPENARTYLEYVSDELDTPIYAVGVGPGREETVVL 450 (454)
T ss_pred cCChhhcCHHHHHHHHHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 7 99999999999999999999999999999999999864
No 11
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=100.00 E-value=1.1e-152 Score=1167.21 Aligned_cols=407 Identities=52% Similarity=0.896 Sum_probs=372.5
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||.++|+|||||||+||||||+ .+|+||+|||||||+|+++++|+||+|||+||++|++||+.|+++|++..
T Consensus 14 KGkivD~La~~~d~VvR~~GG~NAGHTVv-~~g~~~~~hliPSGi~~~~~~~~ig~GvVidp~~l~~Ei~~L~~~g~~~~ 92 (421)
T PF00709_consen 14 KGKIVDYLAEDADVVVRFNGGANAGHTVV-VDGKKFVFHLIPSGILHPGVKTVIGNGVVIDPEALLEEIEELESKGVDVR 92 (421)
T ss_dssp HHHHHHHHHTT-SEEEESSBSTTSSEEEE-ETTEEEEESSS-GGGGSTTSEEEE-TTBEEEHHHHHHHHHHHHCTTGTHG
T ss_pred CceeehhhcCccCEEEEecCCCCCCCEEE-ECCEEEEEeecceeeecCCceEeecCCEEECHHHHHHHHHHHHhcCCCcc
Confidence 89999999999999999999999999999 88999999999999999999999999999999999999999999999876
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+||||+||||+++|+++|.++++++||||||||||||+||++|.|||++||+|++.|++||++++++|+++++.
T Consensus 93 ~rl~Is~rahiv~p~H~~lD~~~E~~~g~~~iGTTgrGIGp~y~dk~~R~gir~~DL~~~~~l~~kl~~~~~~~~~~~~~ 172 (421)
T PF00709_consen 93 SRLFISDRAHIVTPYHKALDRLREEARGKGKIGTTGRGIGPAYADKVARRGIRVGDLLDPEVLREKLKQILDEKNRLLEK 172 (421)
T ss_dssp GTEEEETTSEEE-HHHHHHHHHHHHHCHHTSSSTSSTTHHHHHHHHHTT-S-BGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEeeCceEEecHHHHHhhHHHHHHhccccccCcCCChHHHhhhhccCCCcEeeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCC
Q 015193 162 L-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGI 240 (411)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi 240 (411)
+ +.+++++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++|+|+|+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~al~~gk~iLfEGAQG~lLDid~GtyP~VTsS~t~~~~a~~g~g~ 252 (421)
T PF00709_consen 173 LYGEEPLDVEEILEEYLEYAERLKPYVCDTVEFLNEALKEGKKILFEGAQGTLLDIDHGTYPYVTSSNTTAGGACTGLGI 252 (421)
T ss_dssp CSTT-HHHHHHHHHHHHHHHHHHGGCEE-HHHHHHHHHHTT--EEEEEESEGGG-TTTSSTTSS-SS--STHHHHHHHT-
T ss_pred hcCCCCCCHHHHHHHHHHHHHHhhCceecHHHHHHHHHHcCCcEEEecCcccccccccCcCCCcccCcchHHHHhhhcCC
Confidence 5 456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccc
Q 015193 241 APRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320 (411)
Q Consensus 241 ~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDv 320 (411)
+|+.|++||||+|||+||||+||||||++++.++.||+.|||||+||||||||||||+|++|||+++||+|+|||||||+
T Consensus 253 ~~~~i~~vigV~KAY~TRvG~GpfpTE~~~~~~~~lr~~g~E~G~~tGr~RR~GwlDlv~lrya~~ing~~~lalTkLDv 332 (421)
T PF00709_consen 253 PPRRIDRVIGVTKAYTTRVGEGPFPTELFDEVGEKLRERGNEYGTTTGRPRRCGWLDLVALRYAIRINGITELALTKLDV 332 (421)
T ss_dssp -GGGEEEEEEEEESSEEESSSS--TTBEESHHHHHHHHHTT-BSTTTTSBEEEEEEEHHHHHHHHHHHTESEEEEE-GGG
T ss_pred CCcceeeEEEEEeeccccccCCCCCCcccchHHHHHHhcCcccCCccCCCccccccHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEe
Q 015193 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 400 (411)
Q Consensus 321 L~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is 400 (411)
||+|++||||++|++ +|++++.||++...|++|+|||++||||++|++++++|++||+||++||++||+++|+||+|||
T Consensus 333 L~~~~~ikic~~Y~~-~G~~~~~~p~~~~~l~~~~pvy~~~~GW~~d~~~~~~~e~LP~~a~~yi~~IE~~lgvpI~~is 411 (421)
T PF00709_consen 333 LDGLDEIKICVAYEY-DGKRIDYFPASIEDLEKCEPVYEELPGWKEDISGIRKYEDLPENAREYIEFIEEELGVPITIIS 411 (421)
T ss_dssp GTTESEEEEEEEEEE-TTEEESS--SSHHHHTTEEEEEEEEEECSSGCTT--SGGGS-HHHHHHHHHHHHHHTS-EEEEE
T ss_pred cCCCCceEEEEEEEe-CCcEeecCCcchhhcccceEEEEECCCccccccccCChhHcCHHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 015193 401 VGPGRDALIY 410 (411)
Q Consensus 401 ~Gp~r~~~i~ 410 (411)
+||+|+|||+
T Consensus 412 ~GP~R~~tI~ 421 (421)
T PF00709_consen 412 VGPEREQTII 421 (421)
T ss_dssp -SSSTTSEEE
T ss_pred eCCChHhccC
Confidence 9999999984
No 12
>PRK13783 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1.8e-149 Score=1130.91 Aligned_cols=390 Identities=40% Similarity=0.665 Sum_probs=378.1
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ .++++|+|||||||+|+|+++|+||||||+||+.|++||+.|+++|+++.
T Consensus 15 KGKivD~La~~~d~VvR~qGG~NAGHTVv-~~~~k~~lhliPSGil~~~~~~viG~GvVv~p~~L~~Ei~~L~~~g~~~~ 93 (404)
T PRK13783 15 KGKVVTYLSRYYDIVVRYSGGANAGHTVN-YGDFKVVHHLLPSADFKKNVGAAIGNGVVLDLEVLVEELEELKEKFPDYS 93 (404)
T ss_pred CchhhhhhccCCCEEEECCCcCCCCcEEE-ECCEEEEEeecCceecCCCccEEECCcEEECHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999887
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+||||+||||+++|+++|..++ ++||||||||||||+||++|.|||++||+|++.|++||+.++++++..+.
T Consensus 94 ~rL~Is~rA~li~p~H~~~D~~~E~~rg-~~iGTT~rGIGPaY~dk~~R~giR~~Dl~~~~~l~~kl~~~~~~~~~~~~- 171 (404)
T PRK13783 94 GRIFISELAHVVLPVHKELDEIIESVRK-NAIGTTKRGIGPAYADKVMRVGVRLADLFDEEKLREFLEKILSLYKKLYG- 171 (404)
T ss_pred CCEEEcCCCCCCCcHHHHHhhhcHHhcC-CCCCCCCCCcHHHHhhhhcccCcEEehhCCHHHHHHHHHHHHHHHHHHhC-
Confidence 8999999999999999999999999998 59999999999999999999999999999999999999999999988773
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCCC
Q 015193 162 LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIA 241 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi~ 241 (411)
.+++++++++++.+++++|+|||+|+. +|+++++ ||+||||||||+|||+|||||||||||||+++|+|+|+|+
T Consensus 172 ---~~~~~~~~~~~~~~~~~~l~~~v~d~~-~l~~~~~-gk~vLfEGAQG~lLDid~GtYP~VTSSntta~g~~~g~Gi- 245 (404)
T PRK13783 172 ---IEFDVEKMMEDLLTFYEKIKDLVVSPV-EIKRILE-EKSVLFEGTQGVLLDLDVGTYPYVTSSNCSTTGVSAGMGF- 245 (404)
T ss_pred ---CCCCHHHHHHHHHHHHHHHhhhcCCHH-HHHHHhc-CCcEEEEecchhhcccccCcCCCcCCCCchHhhhhhccCC-
Confidence 125689999999999999999999999 8999986 9999999999999999999999999999999999999999
Q ss_pred CcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccccc
Q 015193 242 PRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVL 321 (411)
Q Consensus 242 p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDvL 321 (411)
|..|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||+|+|||||||||
T Consensus 246 p~~i~~ViGV~KAY~TRVG~GPFPTEl~~e~g~~Lr~~G~E~GttTGRpRR~GwlD~v~lrya~~ing~~~lalTkLDvL 325 (404)
T PRK13783 246 PVKVDEVIGVFKAYTTRVGEGPFPTELFGEEGEKLRKAGHEYGATTGRPRRCGWLDLPLLRYAIEVSGVDSLVMTKADVL 325 (404)
T ss_pred ccccceEEEEEEeecccccCCCCCccccchHHHHHhhccCcccccCCCCcccccchHHHHHHHHHhcCCCeEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEee
Q 015193 322 SELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGV 401 (411)
Q Consensus 322 ~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is~ 401 (411)
|++++||||++|++ +|+++ .||++++.|++|+||||+||||++++ |++||+||++||+++|+||+|||+
T Consensus 326 ~~~~~ikic~~Y~~-~g~~~-~~P~~~~~l~~~~Pvye~~~GW~~~~---------p~~a~~yi~~iE~~~g~pv~~is~ 394 (404)
T PRK13783 326 NGFEKIKVCVRYEI-GGKEV-RDPSSLRDLEKAEPVYEEFDGWKSLE---------DKNFLKFVDFIERETGRKIAYIST 394 (404)
T ss_pred CCCCcccEEEEEee-CCEEE-eCCCChhhhhcceEEEEecCCCCCCc---------HHHHHHHHHHHHHHHCCCEEEEEc
Confidence 99999999999999 99999 69999999999999999999999764 999999999999999999999999
Q ss_pred CCCccccccC
Q 015193 402 GPGRDALIYK 411 (411)
Q Consensus 402 Gp~r~~~i~~ 411 (411)
||+|+|||..
T Consensus 395 Gp~R~~~i~~ 404 (404)
T PRK13783 395 GPKIEEIVEV 404 (404)
T ss_pred CCCHHHhhcC
Confidence 9999999964
No 13
>PRK13788 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=3.6e-147 Score=1114.10 Aligned_cols=380 Identities=43% Similarity=0.774 Sum_probs=368.6
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+|||||..+|+|||||||+||||||+ .+|++|+|||||||+|+|+++|+||||||+||+.|++||++|+++|++
T Consensus 16 KGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~viG~GvVidp~~L~~Ei~~L~~~Gv~-- 92 (404)
T PRK13788 16 KGKVVDALAPEADFVVRYQGGANAGHTVV-AKGKTFKLNLLPSGVLHPHATSVLGDGMVIDPFRFAEERENLRAGGLN-- 92 (404)
T ss_pred CchhhhhhcccCCEEEEeCCcCCcCcEEE-ECCEEEEEeccCceecCCCceEEECCcEEEcHHHHHHHHHHHHhCCCC--
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999999997
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||||||+++|+. .++||||||||||||+||++|.|||++||+|++.|++||+.++++++..+..
T Consensus 93 ~rl~Is~rahli~p~H~~~D~~------~~~IGTT~rGIGpay~dk~~R~gir~~Dl~~~~~l~~kl~~~~~~~~~~~~~ 166 (404)
T PRK13788 93 PKLLISERAHLVLPHHKYVDGR------KNFVGTTGRGIGPAYSDRARRVGIRFGDLLDEAVLRERVERLLEAKPNSTRE 166 (404)
T ss_pred CCEEEeCCcCcCChHHHHHhCc------ccCCCCCCCcchHhhhhhcccccceeehhcCHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999962 4689999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCCC
Q 015193 162 LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIA 241 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi~ 241 (411)
+... ++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||+++++|+|+|++
T Consensus 167 ~~~~--~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~iLfEGAQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi~ 244 (404)
T PRK13788 167 AGWD--TVEKALADLAPMREILLPFIADTGSLLREAIREGKRVLFEGAQATLLDLNYGTYPYVTSSHPTVGGILVGAGVN 244 (404)
T ss_pred ccCC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHCCCeEEEEccchhhhccccCcCCCcCCCCchHHHHHhccCCC
Confidence 6332 58899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccC----CCCCCCCCCCccccchHHHHHHHHHhcCcceEeeec
Q 015193 242 PRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQ----EFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTK 317 (411)
Q Consensus 242 p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~----E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTk 317 (411)
|++|++||||+|||+||||+||||||++++.++.||+.|+ |||+||||||||||||+|++|||+++||+|+|||||
T Consensus 245 p~~i~~ViGV~KAY~TRVG~GPFPTEl~~e~g~~lr~~G~~~~~E~GttTGRpRR~GwlD~v~lrya~~ing~~~lalTk 324 (404)
T PRK13788 245 HKAINKVYGVAKAFTTRVGHGPFPTEVFGEMAIRLRGKGGNPWDEFGTTTGRARRVGWLDLVLLKYACEVNGFDGLVLTK 324 (404)
T ss_pred ccccceEEEEEEeccccccCCCCCCcCccHHHHHHHhcCCCCceeecccCCCCceeecchHHHHHHHHHhcCCCeEEEec
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeE
Q 015193 318 LDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPIN 397 (411)
Q Consensus 318 lDvL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~ 397 (411)
|||||++++||||++|++ +| +|||++|||| ++++++++|++||++||+||++||+++|+||+
T Consensus 325 LDvL~~~~~ikic~~Y~~-~g----------------~pvye~~~GW-~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pv~ 386 (404)
T PRK13788 325 LDVLSGLEKVKVCVEYDD-DG----------------QPVYKELPGW-GDLDGVKSREALPKEAQAYLELIEETTGVPVV 386 (404)
T ss_pred chhcCCCCceeEEEEEec-CC----------------eEEEEeCCCc-cccccccChhhcCHHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999 76 6999999999 79999999999999999999999999999999
Q ss_pred EEeeCCCcccccc
Q 015193 398 YIGVGPGRDALIY 410 (411)
Q Consensus 398 ~is~Gp~r~~~i~ 410 (411)
|||+||+|+|||-
T Consensus 387 ~is~Gp~R~~~i~ 399 (404)
T PRK13788 387 MFSTSPRREDTYG 399 (404)
T ss_pred EEEcCCCHHHhhc
Confidence 9999999999983
No 14
>KOG1355 consensus Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.9e-147 Score=1071.94 Aligned_cols=405 Identities=53% Similarity=0.981 Sum_probs=397.6
Q ss_pred CcceeeeccC--CCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCC
Q 015193 2 KAKASSSISL--PSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79 (411)
Q Consensus 2 kg~~~~~l~~--~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~ 79 (411)
|||+||+|+. ..|+|+|+||||||||||| +||++|.||++||||++|+|.++|||||||+++.|++|++.|+++|+.
T Consensus 44 KGk~vdll~~~~~~di~arcqGGnNAGHTvv-~~g~~ydfHllPSGiinp~~~~~iGNGVVihlp~lF~E~e~le~kGl~ 122 (455)
T KOG1355|consen 44 KGKVVDLLAQDAKVDIVARCQGGNNAGHTVV-VDGVEYDFHLLPSGIINPNCTNFIGNGVVIHLPGLFEELEKLEAKGLK 122 (455)
T ss_pred CceeEEeecccCCCceeeeccCCCCCCcEEE-EcceEEeeeeccccccCCCceEEecceeEEechhHHHHHHhhhhcccc
Confidence 8999999999 6799999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEeCCceecchhHHHhhHHHHHHhcCCC---ccCCCCcchhhhccccccCcceEeeCC-CCCcHHHHHHHHHHHH
Q 015193 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSF---IGTTRRGIGPAYSSKVIRNGIRVCDLR-HMDTFPQKLDLLLSDA 155 (411)
Q Consensus 80 ~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~---iGTTgrGIGpay~dk~~R~gir~~DL~-~~~~l~~kL~~~~~~~ 155 (411)
+++||+||||||++|+||++.|.++|.+++.+. ||||++||||+|+.|+.|.||||+||. |++.|.+|++.+++.+
T Consensus 123 ~~~Rl~iSdrAHLvFdfHq~vDglqE~el~~~~gkniGTTkkGIGP~YSsKa~RsGiRv~dL~~D~~~fs~r~k~l~~~~ 202 (455)
T KOG1355|consen 123 WEKRLIISDRAHLVFDFHQAVDGLQEQELQEQSGKNIGTTKKGIGPAYSSKAARSGLRVCDLVSDFDEFSERFKVLAEQY 202 (455)
T ss_pred ccceeEeccchhheeehhhhcchhhHHHHHhhhcccccccCCCcCcccchhhhhcCcchhHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997654 999999999999999999999999998 5999999999999999
Q ss_pred HhhccCCCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccc
Q 015193 156 AARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGIC 235 (411)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~ 235 (411)
..+|+.++.+ +++++++|+.|+++|+|||.|++.+|++|+..+|+||.||||++|||+|||||||||||||+++|+|
T Consensus 203 ~~~fp~~e~d---ie~el~~~K~~aekl~p~V~D~V~F~~eal~~~KkiLVEGanaamLDiDFGTYPfVTSSn~tvGGvc 279 (455)
T KOG1355|consen 203 KSRFPTLEID---IEGELARYKGYAEKLKPMVRDTVYFMYEALHGKKKILVEGANAAMLDIDFGTYPFVTSSNCTVGGVC 279 (455)
T ss_pred HHhcCCeEec---HHHHHHHHHHHHHhhcchhhchhhhhhhhhhcCceEEEecccceeeecccCcccccccCCCccccee
Confidence 9999988776 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEee
Q 015193 236 TGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNL 315 (411)
Q Consensus 236 ~g~Gi~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lal 315 (411)
+|+|+||+.|.+||||+|||+||||.||||||+.++.|+.||.+|+|||+||||+|||||||+++||||+||||+|+|+|
T Consensus 280 TGlGipPq~ig~viGVVKAYtTRVG~GpFPTEqlneiGelLqt~G~E~GvTTgRkRRCGWLDlv~Lkys~mING~tal~l 359 (455)
T KOG1355|consen 280 TGLGIPPQNIGEVIGVVKAYTTRVGIGPFPTEQLNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYSHMINGFTALAL 359 (455)
T ss_pred ccCCCCcccccceeeeEeeeeeecccCCCchhhccchhHHHHhccceeeeecCCccccchhHHHHHHHHHhhcchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Q 015193 316 TKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVP 395 (411)
Q Consensus 316 TklDvL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvp 395 (411)
||||+||.|+||||+|+|++ +|+.+++||++++.|.++|..|+++|||++|++++|+|+|||++||+|+++||+.+|||
T Consensus 360 TKLDiLd~~~eIkvgVaYk~-~G~~i~~fPa~~~~l~~~eveY~~lpGW~~~~~~vr~~~dlP~~aq~Yv~fiE~~v~vp 438 (455)
T KOG1355|consen 360 TKLDILDTFPEIKVGVAYKL-NGKIIPHFPANQEVLGKVEVEYKTLPGWKTDTTGVRNFKDLPENAQQYVRFIEDFVGVP 438 (455)
T ss_pred ehhhhhhhccceeEEEEEee-CCcCCCCCcccHHHHhheeEEEEecCCCCccchhhhhHhhhhHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCccccccC
Q 015193 396 INYIGVGPGRDALIYK 411 (411)
Q Consensus 396 v~~is~Gp~r~~~i~~ 411 (411)
|.||++||.||+||.+
T Consensus 439 v~~iGvG~~Resmi~~ 454 (455)
T KOG1355|consen 439 VKWIGVGKGRESMIQL 454 (455)
T ss_pred eEEEEecCChHHhhcc
Confidence 9999999999999864
No 15
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=100.00 E-value=2.9e-144 Score=1079.16 Aligned_cols=350 Identities=61% Similarity=1.036 Sum_probs=346.1
Q ss_pred CcceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCCCC
Q 015193 2 KAKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 81 (411)
Q Consensus 2 kg~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~ 81 (411)
|||+||+||..+|+|||||||+||||||+ ++|++|+|||||||+|+++++|+||||||+||++|++||+.|+++|+++.
T Consensus 14 KGKivD~La~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~viG~GvVidp~~l~~Ei~~L~~~g~~~~ 92 (363)
T cd03108 14 KGKIVDLLAERADIVVRFQGGNNAGHTVV-VNGKKFKLHLLPSGILNPGVTCVIGNGVVIDPPALFEEIDELEKKGGDVT 92 (363)
T ss_pred CceeeeeccccCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCeEEEcHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999887
Q ss_pred CceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC
Q 015193 82 GRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG 161 (411)
Q Consensus 82 ~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~ 161 (411)
+||+||+|||||||||+++|+++|..|+.++||||||||||||+||++|.|||++||
T Consensus 93 ~rL~Is~ra~li~P~H~~lD~~~E~~rg~~~iGTT~rGIGpay~dk~~R~gir~~Dl----------------------- 149 (363)
T cd03108 93 GRLFISDRAHLVFPYHILLDGLREEARGKKKIGTTKRGIGPAYEDKAARRGIRVGDL----------------------- 149 (363)
T ss_pred CCEEEcCCCCCCChHHHHHhhhhHhhcCCCCcCCCCCcchHHHHHhhhccCCeEEeC-----------------------
Confidence 899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccCCC
Q 015193 162 LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIA 241 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~Gi~ 241 (411)
|+..+|++|+++||+||||||||+|||+|||||||||||||+++++|+|+|++
T Consensus 150 ---------------------------d~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPyVTSSnt~a~g~~~g~Gi~ 202 (363)
T cd03108 150 ---------------------------DTSYLINEAIQAGKKVLFEGAQGTLLDIDFGTYPFVTSSNTTAGGACTGLGIP 202 (363)
T ss_pred ---------------------------cHHHHHHHHHHcCCcEEEEccchhhhccccCcCCCcCCCCchhhhhhhccCCC
Confidence 88899999999999999999999999999999999999999999999999999
Q ss_pred CcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccccc
Q 015193 242 PRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVL 321 (411)
Q Consensus 242 p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklDvL 321 (411)
|++|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||+|+|||||||||
T Consensus 203 p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~G~E~GttTGRpRR~Gw~D~v~lrya~~ing~t~lalTkLDvL 282 (363)
T cd03108 203 PRKIGRVIGVVKAYTTRVGSGPFPTELFDETGDKLREAGHEFGTTTGRPRRCGWLDLVALKYAVRINGVTELALTKLDVL 282 (363)
T ss_pred ccccceEEEEEeeccccccCCCCCccCchHHHHHHhhcCCcccccCCCCcccccchHHHHHHHHHhcCCCeEEEeceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEEee
Q 015193 322 SELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGV 401 (411)
Q Consensus 322 ~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~is~ 401 (411)
|++++||||++|++ +|+.++.||++++.|++|+||||+||||++++++||+|++||++|++||++||+++|+||.|||+
T Consensus 283 ~~~~~ikvc~~Y~~-~g~~~~~~p~~~~~l~~~~Pvye~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pv~~is~ 361 (363)
T cd03108 283 DGLDEIKVCVAYEL-DGKEIDYFPADLEDLEKVEPVYETLPGWKEDISGVRSYDDLPENAQNYIKRIEELVGVPISIISV 361 (363)
T ss_pred CCCCeEEEEEeEEe-CCEEEeeCCCChhHHhccEEEEEECCCCccccccccchhhcCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 015193 402 GP 403 (411)
Q Consensus 402 Gp 403 (411)
||
T Consensus 362 Gp 363 (363)
T cd03108 362 GP 363 (363)
T ss_pred Cc
Confidence 98
No 16
>PTZ00351 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1.6e-139 Score=1078.81 Aligned_cols=400 Identities=26% Similarity=0.438 Sum_probs=380.4
Q ss_pred CcceeeeccCC--CcEEEEecCCCCCCcEEEec-CCeEEEEeecCceeecCCceeEecCCeEechHHHH-HHHHHhHhCC
Q 015193 2 KAKASSSISLP--STSTSLLAGGANAGHTIYNA-EGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF-NEIDGLEANG 77 (411)
Q Consensus 2 kg~~~~~l~~~--~d~VvRf~GG~NAGHTVv~~-~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~-~Ei~~L~~~g 77 (411)
|||+||+||.. +|+|||||||+||||||+ . +|++|+|||||||+|++++.|+|||||||||++|+ +||+.|+++|
T Consensus 184 KGKIVD~LA~~~~aDvVVRfqGG~NAGHTVV-~~~Gkky~LHLIPSGIL~p~~~~vIGnGVVIdP~~L~e~EI~~L~~~G 262 (710)
T PTZ00351 184 KGKTVDAVAHHPLCTCIARVNSGENAGHTVY-DKAGRKFVFNLAPSGLLLPGKRNYIGPECVMDPVSFMEKEIIQLIDAG 262 (710)
T ss_pred CchhhhhhccCCCCCEEEEcCCcCCCCceEE-ecCCeEEEEeccCceecCCCceEEECCCEEEcHHHHHHHHHHHHHHcC
Confidence 99999999987 899999999999999999 6 89999999999999999999999999999999998 7999999999
Q ss_pred CCCCCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCC-CcHHHHHHHHHHHHH
Q 015193 78 VSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHM-DTFPQKLDLLLSDAA 156 (411)
Q Consensus 78 ~~~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~-~~l~~kL~~~~~~~~ 156 (411)
+++.+||+||+|| ||||||+++|.++| .+||||+|||||||+||++|+|||++||+|+ +.|++||+.++++++
T Consensus 263 i~~~~RL~ISdrA-lI~PyH~~lD~l~E-----~~iGTT~rGIGPaY~DKv~R~GIRl~DL~~~~~~lr~rL~~~l~~~n 336 (710)
T PTZ00351 263 IDYRDRLFIGNVC-IVTPYHKLLDLLGS-----AANSSTLKGMAPVHGSKVMKRGIRLDHIFNDDETLRKRLEKDMDTYL 336 (710)
T ss_pred CCCCCCEEEcccc-ccChhHHHHHhhhh-----hccCCCCCccChhhhchhhhcccCHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9877899999999 99999999999988 4799999999999999999999999999997 999999999999999
Q ss_pred hhcc-------CC---CCCC------------CcH---HHHHHHHH-HHHHHhc-----ccccchHHHHHHHHHcCCcEE
Q 015193 157 ARFP-------GL---KYTP------------DVL---REEVEKYK-RFAERLE-----PFITDTVHFMNESIAQKRKIL 205 (411)
Q Consensus 157 ~~~~-------~~---~~~~------------~~~---~~~~~~~~-~~~~~l~-----~~i~d~~~~l~~al~~gk~iL 205 (411)
.++. .+ +.++ +++ ++++++|. .|+++|+ ||++|+..+|++|+++||+||
T Consensus 337 ~~l~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~e~~~e~l~~~y~~rl~~~~~~p~v~Dt~~~L~~A~~~GkkVL 416 (710)
T PTZ00351 337 GLLKVKNLSDADVVRLCREENSDGVVRVPDYVIAFAQAKDKVEFLVKLYRDRVRHNPDFPARCDVTYELHAAVLRGEKVL 416 (710)
T ss_pred HHhhcccccccchhhhccccccccccccccccccchhHHHHHHHHHHHHHHHHhccCCCCeEEeHHHHHHHHHHCCCeEE
Confidence 8887 22 1111 233 67788888 9999999 999999999999999999999
Q ss_pred EEecccccccccCCC-CCcccCCCCCccccccccCCCCcccCe-EEEEEeec-ccccCCCCCCC----------------
Q 015193 206 VEGGQATMLDIDFGT-YPFVTSSSPSAGGICTGLGIAPRVVGD-LIGVVKAY-TTRVGSGPFPT---------------- 266 (411)
Q Consensus 206 fEGaQG~lLDid~Gt-YP~VTSSnt~~~g~~~g~Gi~p~~i~~-viGV~KAY-~TRVG~GPfpT---------------- 266 (411)
||||||+|||+|||| |||||||||+++|+|+|+|++|+.|++ ||||+||| +||||+|||||
T Consensus 417 fEGAQg~lLDiD~GT~YPfVTSSnttAgGa~~G~Gi~p~~i~~~ViGV~KAY~sTRVG~GPFPT~~~~~~~~~~~~~~~~ 496 (710)
T PTZ00351 417 LEGPQSYWLSNARTKFWESTTSADTTAAGLLAASQLNFQKFKSVVLNVHKAPGSSRVGIGACPSSFVPQDYFSAQNIKTL 496 (710)
T ss_pred EEcchhhhhhhhcCCCCCCcCccchHHHHHHhhcCCCcccCCceEEEEEeCCCCCcCcCCCCCCcccccccccccccccc
Confidence 999999999999997 999999999999999999999999999 99999999 99999999999
Q ss_pred ---------------------------------------ccCCCccchh---------hhccCCCCCCCCCCCccccchH
Q 015193 267 ---------------------------------------EIFGQGGDRL---------RLAGQEFGTTTGRPRRCGWLDV 298 (411)
Q Consensus 267 ---------------------------------------E~~~~~g~~l---------r~~g~E~G~tTGRpRR~GwlD~ 298 (411)
|+++++|++| |+.|+|||+||||||||||||+
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~El~de~G~~l~~~~~~~~~r~~G~E~GatTGRPRRCGWfD~ 576 (710)
T PTZ00351 497 RDLPSATCANFEAVQRTLFRDGFPHSNDKARHNGIMAPVEYSDETGDYNIGVAMAIASAQHHGECGAVTKKPRVCGFFDC 576 (710)
T ss_pred cccccccccccchhcccccccccccccccccccccCCccccccchhhHhhhccccchhhhcCccccCCCCCCccccchHH
Confidence 8889999999 9999999999999999999999
Q ss_pred HHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecC--CCceec----------------cCCcChhhhccCeEEEEE
Q 015193 299 VALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQF--DGTPVK----------------SFPADLLLLEQLKVEYEV 360 (411)
Q Consensus 299 v~lrya~~ing~~~lalTklDvL~~~~~ikIc~~Y~~~--~g~~~~----------------~~P~~~~~l~~~~pvY~~ 360 (411)
|++||++++||+ .|+||||||||++++||||++|++. +|+.++ .|| +...|++|+|||++
T Consensus 577 Vllrya~~inG~-~LalTKLDVLd~ldeIkVcvaY~~~~~~gk~~~~~~~~~~~~~~~~~~~~~P-~~~~L~~~~PIYe~ 654 (710)
T PTZ00351 577 VLQHEVNSIQGP-YLTISALDRGDEYDKVGVTIAYVYYNPEGKQVDVNGHVYKNGDIIRAGDPVP-SEPALYHCHPIVKL 654 (710)
T ss_pred HHHHHHHhcCCc-eEEEeeeeccCCCCeeeEEEEEEeeCCCCeEeccccccccccccccccCCCC-ChHHhccceEEEEE
Confidence 999999999999 9999999999999999999999974 799888 899 68999999999999
Q ss_pred cCCCccc-cccc--CCCCCCCHHHHHHHHHHHHHhCCCeEEEeeCCCcccccc
Q 015193 361 LPGWQSD-ISSV--RNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIY 410 (411)
Q Consensus 361 ~~GW~~~-~~~~--~~~~~LP~~a~~yi~~ie~~~gvpv~~is~Gp~r~~~i~ 410 (411)
||||+++ |+++ |+|++||++|++||++||+++|+||.|||+||+|+|||.
T Consensus 655 ~~GWk~~~is~~k~r~~~~LP~~a~~Yi~~IE~~~gvpI~~IsvGP~R~q~I~ 707 (710)
T PTZ00351 655 IDGWRDNPIAAAKRRRNAPLPRGVCELLSTIEYFTNCKILSIGNGPNGDDIIY 707 (710)
T ss_pred CCCCCCCcccccccCChHHhhHHHHHHHHHHHHHHCCCEEEEecCCChhHeeE
Confidence 9999999 9988 999999999999999999999999999999999999986
No 17
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=5.3e-127 Score=943.68 Aligned_cols=315 Identities=39% Similarity=0.637 Sum_probs=299.6
Q ss_pred CcceeeeccC--CCcEEEEecCCCCCCcEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHHHHhHhCCCC
Q 015193 2 KAKASSSISL--PSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79 (411)
Q Consensus 2 kg~~~~~l~~--~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGil~~~~~~~ig~GvVv~p~~l~~Ei~~L~~~g~~ 79 (411)
|||+|||||. ++|+|||||||+||||||+ .+|+||+|||||||+|+|++.|+||||||+||+.|++||+.| |+
T Consensus 16 KGkivD~La~~~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~~iG~GvVv~p~~L~~Ei~~L---~~- 90 (333)
T PRK04293 16 KGKIIAYLALKDKPSIIARGGVGPNAGHTVE-YNGKKYGLRMIPSGFVNKDAKLAIGAGVLVDPEVLLKEVEEL---NV- 90 (333)
T ss_pred CceeehhhcccCCCCEEEEcCCCCCCCcEEE-ECCEEEEEEecCccccCCCccEEECCcEEECHHHHHHHHHHh---CC-
Confidence 9999999998 8999999999999999999 899999999999999999999999999999999999999999 43
Q ss_pred CCCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhc
Q 015193 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARF 159 (411)
Q Consensus 80 ~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~ 159 (411)
.+||+||+||||++|||+++|+++|. ++ ++||||||||||||+||++|.|||+.|.
T Consensus 91 -~~rL~Is~ra~li~p~H~~~D~~~E~-~~-~~IGTT~rGIGpaY~dk~~R~gir~~~~--------------------- 146 (333)
T PRK04293 91 -GGRVFVDYRCGIIEEKHVEEDRSDEH-LS-KKIGSTGTGCGPANADRVLRRLKLAKDV--------------------- 146 (333)
T ss_pred -CCCEEEcCCCccCCHHHHHHhHHhHH-hC-CCCCCCCCcccHhhHHHHhhhhhhccch---------------------
Confidence 47999999999999999999999998 44 8999999999999999999999998431
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHhcccccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccCCCCCccccccccC
Q 015193 160 PGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLG 239 (411)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTSSnt~~~g~~~g~G 239 (411)
++|+||++|+..+|++++++||+||||||||+|||+|||||||||||||+++++|+|+|
T Consensus 147 ---------------------~~l~~~v~d~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTSSnt~a~g~~~g~G 205 (333)
T PRK04293 147 ---------------------EELEKYLTDVPEEVNEALDRGENVLIEGTQGFGLSLYYGTYPYVTSKDTTASGIASDVG 205 (333)
T ss_pred ---------------------hhhccceecHHHHHHHHHHCCCeEEEEeccceeeccccCcCCCccCCCchhhhhhhccC
Confidence 47899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEEEeecccccCCCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeeccc
Q 015193 240 IAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319 (411)
Q Consensus 240 i~p~~i~~viGV~KAY~TRVG~GPfpTE~~~~~g~~lr~~g~E~G~tTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 319 (411)
++|+.|++||||+|||+||||+||||||++++.++.++. +|||+||||||||||||++++|||+++||+|+|||||||
T Consensus 206 i~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~~g~--~E~GttTGRpRR~GwlD~v~lrya~~ing~~~lalTklD 283 (333)
T PRK04293 206 VGPTKVDEVIVVFKSYPTRVGEGPFPTELSLEEAEKLGL--VEYGTVTGRRRRVGPFDFELARRAARINGATQIAITKLD 283 (333)
T ss_pred CCCcccceEEEEEeeecccccCCCCCccCCchhhhhcCC--ccccccCCCCcccccchHHHHHHHHHhcCCCeEEEEcce
Confidence 999999999999999999999999999999999885442 599999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Q 015193 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYI 399 (411)
Q Consensus 320 vL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~gvpv~~i 399 (411)
||+. +++++++|++||+||++||++||+++|+||.||
T Consensus 284 vL~~-------------------------------------------~~~~~~~~~~LP~~a~~yi~~iE~~~~~pv~~i 320 (333)
T PRK04293 284 KLDK-------------------------------------------EAYGVTEYDKLPPEAKKFIEEIEEELGVPVTLI 320 (333)
T ss_pred ecCC-------------------------------------------ccccCCchHHcCHHHHHHHHHHHHHHCCCEEEE
Confidence 9971 457899999999999999999999999999999
Q ss_pred eeCCCccccccC
Q 015193 400 GVGPGRDALIYK 411 (411)
Q Consensus 400 s~Gp~r~~~i~~ 411 (411)
|+||+|+|||.+
T Consensus 321 s~Gp~r~~~i~~ 332 (333)
T PRK04293 321 STGPELEDTIDL 332 (333)
T ss_pred EcCCCHHHeEec
Confidence 999999999864
No 18
>PF11181 YflT: Heat induced stress protein YflT
Probab=63.28 E-value=72 Score=26.67 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=36.9
Q ss_pred CeEechHHHHHHHHHhHhCCCCCCCceEEeCCceecchhHHHhhHHHHHHhcCCCccCCCCcchhhhc
Q 015193 58 GVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYS 125 (411)
Q Consensus 58 GvVv~p~~l~~Ei~~L~~~g~~~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~~iGTTgrGIGpay~ 125 (411)
|++=+...++..|++|+.+|+... .|+ |+.--....+.+.+.. ..+.+|++..|+.-...
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~d-dI~------Vva~d~~~~~~l~~~t-~~~~~~~~~~~~~d~~~ 63 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSED-DIY------VVAKDKDRTERLADQT-DTNTVGASEESFWDKIK 63 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcc-cEE------EEEcCchHHHHHHHhc-CCceeccccccHHHHHH
Confidence 466788899999999999999753 333 2221122235555443 33457777777764443
No 19
>PF13316 DUF4087: Protein of unknown function (DUF4087)
Probab=58.29 E-value=3.7 Score=35.13 Aligned_cols=9 Identities=56% Similarity=1.461 Sum_probs=7.9
Q ss_pred CccccchHH
Q 015193 291 RRCGWLDVV 299 (411)
Q Consensus 291 RR~GwlD~v 299 (411)
+||||||-+
T Consensus 7 ~RCGW~~NP 15 (101)
T PF13316_consen 7 TRCGWFDNP 15 (101)
T ss_pred cccCcccCC
Confidence 799999965
No 20
>PRK05414 urocanate hydratase; Provisional
Probab=55.44 E-value=95 Score=33.89 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=101.1
Q ss_pred Cceee--cCCc-eeEecCCeEechHHHHHHHHHhHhCCCC------CCCceEEeCCceecchhHHHhhHHHHHHhcCC--
Q 015193 43 PSGIL--NEDT-VCVIGNGVVVHLPGLFNEIDGLEANGVS------CKGRILVSDRAHLLFDFHQEIDGLREAELAKS-- 111 (411)
Q Consensus 43 PSGil--~~~~-~~~ig~GvVv~p~~l~~Ei~~L~~~g~~------~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~-- 111 (411)
|-|+| ||.+ +.+|.|+++|---+=.++.++|+++|+. ..+=+||-.+--|-=-|-..++..+- .-+..
T Consensus 88 Pvglf~th~~APRVliaN~~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk-~f~g~L~ 166 (556)
T PRK05414 88 PVGVFKTHPDAPRVLIANSNLVPHWANWEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQ-HFGGDLA 166 (556)
T ss_pred ceeeccCCCCCCeEEEEcCccccCCCCHHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHH-hcCCCCc
Confidence 44444 3444 5789999999776777889999999973 23568998876543334333332221 11110
Q ss_pred -C----ccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhcc-
Q 015193 112 -F----IGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP- 185 (411)
Q Consensus 112 -~----iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 185 (411)
+ -|--|+|=...-+-+++. ++-++-=.|++++++|+++= -+..-..++++.++...++.++=+|
T Consensus 167 G~~~lTaGLGGMgGAQPlA~~mag-~v~i~vEvd~~ri~kR~~~g---------yld~~~~~Ldeal~~~~~a~~~~~~~ 236 (556)
T PRK05414 167 GRLVLTAGLGGMGGAQPLAATMAG-AVCLAVEVDESRIDKRLRTG---------YLDEKADDLDEALALAEEAKAAGEPL 236 (556)
T ss_pred eeEEEEecCCccccccHHHHHhcC-ceEEEEEECHHHHHHHHhCC---------cceeEcCCHHHHHHHHHHHHHcCCce
Confidence 0 122222222223333333 22222223777777777641 1222223588888877777666566
Q ss_pred ---cccchHHHHHHHHHcCCcEEEEecccccccccCCCCC
Q 015193 186 ---FITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYP 222 (411)
Q Consensus 186 ---~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP 222 (411)
|+.++.+++.+.+++|-.+=+---|=..=|...|.||
T Consensus 237 SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P 276 (556)
T PRK05414 237 SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLP 276 (556)
T ss_pred EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCC
Confidence 4778888888888888777677778888898889999
No 21
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.32 E-value=1.3e+02 Score=32.83 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=100.2
Q ss_pred Cceee--cCCc-eeEecCCeEechHHHHHHHHHhHhCCCC------CCCceEEeCCceecchhHHHhhHHHHHHhcCC--
Q 015193 43 PSGIL--NEDT-VCVIGNGVVVHLPGLFNEIDGLEANGVS------CKGRILVSDRAHLLFDFHQEIDGLREAELAKS-- 111 (411)
Q Consensus 43 PSGil--~~~~-~~~ig~GvVv~p~~l~~Ei~~L~~~g~~------~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~-- 111 (411)
|-|+| |+.+ +.+|.|+++|---+=.++.++|+++|+. ..+=+||-.+--|-=-|-..++..+ +.-+..
T Consensus 79 PvgvF~th~~APRVliaNs~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aar-k~f~~~L~ 157 (545)
T TIGR01228 79 PVGVFKTHENAPRVLIANSNLVPHWADWEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELAR-QHFGGSLK 157 (545)
T ss_pred ceeeccCCCCCCeEEEEcCccccCCCCHHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHH-HhcCCCCc
Confidence 44444 3444 5789999999777778888999999973 2356899887654333433333221 111110
Q ss_pred -C----ccCCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhcc-
Q 015193 112 -F----IGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP- 185 (411)
Q Consensus 112 -~----iGTTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 185 (411)
+ -|--|+|=...-+-+++. ++-++-=.|++++++|+++= -+..-..++++.++...++.++=+|
T Consensus 158 G~~~lTaGLGGMgGAQPlA~~mag-~v~i~vEvd~~ri~kR~~~g---------yld~~~~~ldeal~~~~~a~~~~~~~ 227 (545)
T TIGR01228 158 GKWVLTAGLGGMGGAQPLAVTMNG-GVSIAVEVDESRIDKRLETK---------YCDEQTDSLDEALARAEEAKAEGKPI 227 (545)
T ss_pred eeEEEEeCCCccccccHHHHHHcC-ceEEEEEECHHHHHHHHhcC---------cceeEcCCHHHHHHHHHHHHHcCCce
Confidence 0 011122222222333332 22222213777777777641 1222223588888877777666665
Q ss_pred ---cccchHHHHHHHHHcCCcEEEEecccccccccCCCCC
Q 015193 186 ---FITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYP 222 (411)
Q Consensus 186 ---~i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP 222 (411)
|+.++.+++.+.+++|-.+=+---|=..=|...|.||
T Consensus 228 SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P 267 (545)
T TIGR01228 228 SIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIP 267 (545)
T ss_pred EEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCC
Confidence 4778888888888888766677778888899999778
No 22
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.49 E-value=14 Score=37.92 Aligned_cols=63 Identities=30% Similarity=0.303 Sum_probs=40.8
Q ss_pred HHHHHHHh---cCcceEeeecccccCCCCCcEEEeeeecCCCceeccCCcChhhhccCeEEEEEcCCCcccccccCCCCC
Q 015193 300 ALKYCCQI---NGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSD 376 (411)
Q Consensus 300 ~lrya~~i---ng~~~lalTklDvL~~~~~ikIc~~Y~~~~g~~~~~~P~~~~~l~~~~pvY~~~~GW~~~~~~~~~~~~ 376 (411)
++..|-.. -++|++.|||||. +.-..+-+.++|++ =.||| |=|+.+.+...+
T Consensus 273 al~QAk~F~eav~l~GiIlTKlDg-tAKGG~il~I~~~l------------------~~PI~--fiGvGE~~~DL~---- 327 (340)
T COG0552 273 ALSQAKIFNEAVGLDGIILTKLDG-TAKGGIILSIAYEL------------------GIPIK--FIGVGEGYDDLR---- 327 (340)
T ss_pred HHHHHHHHHHhcCCceEEEEeccc-CCCcceeeeHHHHh------------------CCCEE--EEeCCCChhhcc----
Confidence 55555544 4899999999994 44455555555544 13555 678887654444
Q ss_pred CCHHHHHHHHHH
Q 015193 377 LPKGAREFVERI 388 (411)
Q Consensus 377 LP~~a~~yi~~i 388 (411)
|.+++.|++.|
T Consensus 328 -~Fd~~~fv~~L 338 (340)
T COG0552 328 -PFDAEWFVDAL 338 (340)
T ss_pred -ccCHHHHHHHh
Confidence 45678888765
No 23
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=49.68 E-value=52 Score=35.78 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=83.9
Q ss_pred CCc-eeEecCCeEechHHHHHHHHHhHhCCCC------CCCceEEeCCceecchhHHHhhHHHHHHhcCC---C----cc
Q 015193 49 EDT-VCVIGNGVVVHLPGLFNEIDGLEANGVS------CKGRILVSDRAHLLFDFHQEIDGLREAELAKS---F----IG 114 (411)
Q Consensus 49 ~~~-~~~ig~GvVv~p~~l~~Ei~~L~~~g~~------~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~~---~----iG 114 (411)
+.+ +.+|.|+++|---+=.++.++|+++|+. ..+=+||-.+--|-=-|-..++.. .+.-+.+ + -|
T Consensus 86 ~~APRVliaN~~lVp~wa~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aa-rk~~g~~L~Gk~~lTaG 164 (546)
T PF01175_consen 86 PDAPRVLIANSNLVPNWATWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAA-RKHFGGDLAGKLFLTAG 164 (546)
T ss_dssp TTS-SEEEEESEB-GGGGSHHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHH-HHHSTTS-TT-EEEEE-
T ss_pred CCCCeEEEEcCcccCCCCCHHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHH-HHhcCCCCcceEEEEec
Confidence 444 5789999999877778899999999973 235578888653322233333222 1111211 1 13
Q ss_pred CCCCcchhhhccccccCcceEeeCCCCCcHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhcc----cccch
Q 015193 115 TTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP----FITDT 190 (411)
Q Consensus 115 TTgrGIGpay~dk~~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~d~ 190 (411)
--|+|=...-+-+++---.=+.| .|++.+++|+++- -+..-..++++.++..+++.++=+| |+.++
T Consensus 165 LGGMgGAQplA~~m~g~v~l~vE-vd~~ri~kR~~~g---------~ld~~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ 234 (546)
T PF01175_consen 165 LGGMGGAQPLAATMAGGVGLIVE-VDPSRIEKRLEQG---------YLDEVTDDLDEALARAKEARAKKEPLSIGLLGNA 234 (546)
T ss_dssp -STTCCHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT---------SSSEEESSHHHHHHHHHHHHHTT--EEEEEES-H
T ss_pred ccccccchHHHHHhcCceEEEEE-ECHHHHHHHHhCC---------CeeEEcCCHHHHHHHHHHhhccCCeeEEEEeccH
Confidence 33444333344444332222333 4777777776541 1222224588888888887777666 57788
Q ss_pred HHHHHHHHHcCCcEEEEecccccccccCCCCC
Q 015193 191 VHFMNESIAQKRKILVEGGQATMLDIDFGTYP 222 (411)
Q Consensus 191 ~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP 222 (411)
.+++.+.+++|-.+=+---|=.+=|...|.||
T Consensus 235 ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P 266 (546)
T PF01175_consen 235 ADLWEELVERGIIPDLVTDQTSAHDPLNGYYP 266 (546)
T ss_dssp HHHHHHHHHTT---SEE---SSTT-TTTS---
T ss_pred HHHHHHHHHcCCCCCcccCCCccccccccCCC
Confidence 88888888887666666777777788888888
No 24
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.66 E-value=95 Score=29.07 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=13.8
Q ss_pred HhcCcceEeeecccccC
Q 015193 306 QINGLSSLNLTKLDVLS 322 (411)
Q Consensus 306 ~ing~~~lalTklDvL~ 322 (411)
+.-+++++.+||+|--.
T Consensus 138 ~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 138 EAFGIDGLILTKLDETA 154 (196)
T ss_dssp HHSSTCEEEEESTTSSS
T ss_pred hcccCceEEEEeecCCC
Confidence 44578999999999754
No 25
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=31.88 E-value=5.7e+02 Score=27.84 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=103.3
Q ss_pred Cceee--cCCc-eeEecCCeEechHHHHHHHHHhHhCCCC------CCCceEEeCCceecchhHHHhhHHHHHHhcC--C
Q 015193 43 PSGIL--NEDT-VCVIGNGVVVHLPGLFNEIDGLEANGVS------CKGRILVSDRAHLLFDFHQEIDGLREAELAK--S 111 (411)
Q Consensus 43 PSGil--~~~~-~~~ig~GvVv~p~~l~~Ei~~L~~~g~~------~~~rL~IS~rAhiv~p~H~~~D~~~E~~~g~--~ 111 (411)
|-|+| |+.+ +.+|.|+.+|---+=.+-..+|+++|+- ..+=+||-.+--|-=-|...+...+-...++ .
T Consensus 88 PVgvFkTh~~APrVlIaNsnlVp~wanwe~f~el~~~Gl~myGQMTAGsWiYIGtQGIvqGTyeT~~~~~r~h~~gdL~G 167 (561)
T COG2987 88 PVGVFKTHKDAPRVLIANSNLVPHWANWEHFNELDAKGLTMYGQMTAGSWIYIGTQGIVQGTYETFAEAGRQHFGGDLKG 167 (561)
T ss_pred ceeEeecCCCCCeEEEecCccccccccHHHHHHHHhhhhhheecccccceEEEcccceeechHHHHHHHHHHhcCCCccc
Confidence 55566 3444 4778998888766667888889999872 2356899887755444544333222221111 1
Q ss_pred C----ccCCCCcchhhhccccccC-cceEeeCCCCCcHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhccc
Q 015193 112 F----IGTTRRGIGPAYSSKVIRN-GIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPF 186 (411)
Q Consensus 112 ~----iGTTgrGIGpay~dk~~R~-gir~~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (411)
+ -|--|+|=....+-+++.- .| +.| .|+++...||+.-. +.....+++|-++...++.+.=+|+
T Consensus 168 k~~lTaGLGGMgGAQplA~~ma~~v~i-~ve-vd~srI~~Rl~t~y---------~d~~a~~ldeAl~~a~~~~~ag~p~ 236 (561)
T COG2987 168 KWVLTAGLGGMGGAQPLAATMAGAVCI-AVE-VDESRIDKRLRTGY---------LDEIAETLDEALALAEEATAAGEPI 236 (561)
T ss_pred eEEEecCCCcccccchHHHHhcCceEE-EEE-eCHHHHHHHHhcch---------hhhhcCCHHHHHHHHHHHHhcCCce
Confidence 1 1223333333334443321 22 122 36667777766521 1111234666666666666655564
Q ss_pred ----ccchHHHHHHHHHcCCcEEEEecccccccccCCCCCcccC
Q 015193 187 ----ITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTS 226 (411)
Q Consensus 187 ----i~d~~~~l~~al~~gk~iLfEGaQG~lLDid~GtYP~VTS 226 (411)
+.+...++.+.+++|.++=+---|=..=|...|..|-..|
T Consensus 237 SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s 280 (561)
T COG2987 237 SIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYT 280 (561)
T ss_pred EEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCC
Confidence 6677888888999998888888999999999997785554
No 26
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=28.52 E-value=91 Score=31.65 Aligned_cols=89 Identities=15% Similarity=0.274 Sum_probs=49.7
Q ss_pred cCCCCcchhhhcccc-ccCcceEeeCCCCCcHHHHHHHHHHH--HHhh----ccCC---CCCCCcHHH-HHHHHHHHHHH
Q 015193 114 GTTRRGIGPAYSSKV-IRNGIRVCDLRHMDTFPQKLDLLLSD--AAAR----FPGL---KYTPDVLRE-EVEKYKRFAER 182 (411)
Q Consensus 114 GTTgrGIGpay~dk~-~R~gir~~DL~~~~~l~~kL~~~~~~--~~~~----~~~~---~~~~~~~~~-~~~~~~~~~~~ 182 (411)
|++|.|=.. .+.++ .+.|+. -+...|.+++.++..... .+.+ +..+ ...| +-++ .+..|..-.+.
T Consensus 99 G~sgsGKSt-lA~~La~~l~~~--~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~-~~~~~~l~g~~~~~~~ 174 (301)
T PRK04220 99 GASGVGTST-IAFELASRLGIR--SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPP-PPEPPVIYGFERHVEP 174 (301)
T ss_pred CCCCCCHHH-HHHHHHHHhCCC--EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCC-CCchhhhhhHHHHHHH
Confidence 777777665 44444 344664 234567899888875511 1111 1111 1111 1222 34444444444
Q ss_pred hcccccchHHHHHHHHHcCCcEEEEec
Q 015193 183 LEPFITDTVHFMNESIAQKRKILVEGG 209 (411)
Q Consensus 183 l~~~i~d~~~~l~~al~~gk~iLfEGa 209 (411)
+.+. ....|.+++++|+++++||.
T Consensus 175 v~~g---i~~~I~~~~~~g~s~IiEGv 198 (301)
T PRK04220 175 VSVG---VEAVIERALKEGISVIIEGV 198 (301)
T ss_pred HHHH---HHHHHHHHHHhCCcEEEecC
Confidence 4433 56788889999999999986
No 27
>PRK11372 lysozyme inhibitor; Provisional
Probab=26.99 E-value=1.3e+02 Score=25.87 Aligned_cols=42 Identities=10% Similarity=-0.078 Sum_probs=31.1
Q ss_pred cceeeeccCCCcEEEEecCCCCCCcEEEecCCeEEEEeecCcee
Q 015193 3 AKASSSISLPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGI 46 (411)
Q Consensus 3 g~~~~~l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGi 46 (411)
...+.|-|....+.|+|....+ .=++. .+|+.+.|.+.||+.
T Consensus 30 ~~~~~Y~C~~~~~~v~~~~~~~-~v~l~-~~~~~~~L~~~~SAS 71 (109)
T PRK11372 30 TDTLEYQCDEKPLTVKLNNPRQ-EVSFV-YDNQLLHLKQGISAS 71 (109)
T ss_pred CCcEEEEeCCcEEEEEEECCCC-eEEEE-ECCEEEEEEEeeccC
Confidence 4467899999899999974322 22234 899999999999653
No 28
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=26.71 E-value=84 Score=29.55 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=46.4
Q ss_pred cCCCCcchhhhcccc-ccCcceEeeCCCCCcHHHHHHHHHHHHHhhccC-C----CCCCCcHHHHHHHHHHHHHHhcccc
Q 015193 114 GTTRRGIGPAYSSKV-IRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG-L----KYTPDVLREEVEKYKRFAERLEPFI 187 (411)
Q Consensus 114 GTTgrGIGpay~dk~-~R~gir~~DL~~~~~l~~kL~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~~i 187 (411)
|+.|.|=+ +.+..+ .+.|+.. +...|.+++.++.....-..+..+ + -.++...+.++..|....+.+.+.+
T Consensus 10 G~~G~GKs-t~a~~l~~~~~~~~--~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L 86 (197)
T PRK12339 10 GIPGVGKT-SISGYIARHRAIDI--VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGI 86 (197)
T ss_pred CCCCCCHH-HHHHHHHHhcCCeE--EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Confidence 44444444 223323 3446543 345566777777544211011111 0 0112223455666666656654443
Q ss_pred cchHHHHHHHHHcCCcEEEEecc
Q 015193 188 TDTVHFMNESIAQKRKILVEGGQ 210 (411)
Q Consensus 188 ~d~~~~l~~al~~gk~iLfEGaQ 210 (411)
..++..++.+|..+++||+.
T Consensus 87 ---~~va~~~l~~G~sVIvEgv~ 106 (197)
T PRK12339 87 ---NRVIRRALLNGEDLVIESLY 106 (197)
T ss_pred ---HHHHHHHHHcCCCEEEEecC
Confidence 44556678899999999963
No 29
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=24.53 E-value=45 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.415 Sum_probs=28.3
Q ss_pred EcCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Q 015193 360 VLPGWQSDISSVRNYSDLPKGAREFVERIEELV 392 (411)
Q Consensus 360 ~~~GW~~~~~~~~~~~~LP~~a~~yi~~ie~~~ 392 (411)
-|.||.++|....+|+++-+..+.|-+.+.++-
T Consensus 16 ffedWeedIve~~~F~~~eeAl~~Y~~~~~~~~ 48 (120)
T PF06279_consen 16 FFEDWEEDIVEEKEFDNYEEALKYYKKLWQKLK 48 (120)
T ss_pred ccccchHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 378999999999999999988888877777654
No 30
>KOG4612 consensus Mitochondrial ribosomal protein L34 [Translation, ribosomal structure and biogenesis]
Probab=23.53 E-value=33 Score=28.95 Aligned_cols=37 Identities=32% Similarity=0.622 Sum_probs=23.9
Q ss_pred CCCCCcc-CCCccc-hhhhccCCCC-CCCCCCCccccchH
Q 015193 262 GPFPTEI-FGQGGD-RLRLAGQEFG-TTTGRPRRCGWLDV 298 (411)
Q Consensus 262 GPfpTE~-~~~~g~-~lr~~g~E~G-~tTGRpRR~GwlD~ 298 (411)
+|.||-+ ++.++. .-...||||. ++-.|.|-.||+-.
T Consensus 43 ~~lpTp~~fg~~qQ~RwKsrGNeYQPSn~KRKrkhGfl~R 82 (105)
T KOG4612|consen 43 TPLPTPLGFGLIQQRRWKSRGNEYQPSNLKRKRKHGFLAR 82 (105)
T ss_pred CCCCCccchhHHHHHHhhhcCCccCchhhhhhhhhhhhhh
Confidence 5788874 222211 1115699998 56688899999854
No 31
>PF09864 MliC: Membrane-bound lysozyme-inhibitor of c-type lysozyme; InterPro: IPR018660 This entry contains proteins that represent a novel family of bacterial lysozyme inhibitors with widespread homologues in Gram-negative bacteria, that may function as colonization or virulence factors in bacteria interacting with an animal host []. ; PDB: 3OE3_F 2F09_A 3F6Z_D.
Probab=22.36 E-value=1.3e+02 Score=23.28 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=27.4
Q ss_pred ecc-CCCcEEEEecCCCCCCcEEEecCCeEEEEeecCcee
Q 015193 8 SIS-LPSTSTSLLAGGANAGHTIYNAEGKKFALHLVPSGI 46 (411)
Q Consensus 8 ~l~-~~~d~VvRf~GG~NAGHTVv~~~g~~~~lhliPSGi 46 (411)
|.| ....+.|||....+.- -++..+++.+.|.+.||+.
T Consensus 1 y~C~~~~~i~v~~~~~~~~~-a~l~~~~~~~~L~~~~SaS 39 (72)
T PF09864_consen 1 YQCDNGQRISVTYINDDDPS-AVLRYDDQEYTLPQAPSAS 39 (72)
T ss_dssp EEECCSCEEEEEEEECTTEE-EEEECCTEEEEEEEECTSS
T ss_pred CCCCCCCEEEEEEcCCCCcE-EEEEECCEEEEEEEeecCC
Confidence 456 4567888987665543 3444888999999999765
No 32
>PF13158 DUF3993: Protein of unknown function (DUF3993)
Probab=22.16 E-value=2.5e+02 Score=24.92 Aligned_cols=40 Identities=43% Similarity=0.833 Sum_probs=27.9
Q ss_pred HHhcccccch--HHHHHHHHH-cCCcEEEEecccccccccCCCC--CcccCC
Q 015193 181 ERLEPFITDT--VHFMNESIA-QKRKILVEGGQATMLDIDFGTY--PFVTSS 227 (411)
Q Consensus 181 ~~l~~~i~d~--~~~l~~al~-~gk~iLfEGaQG~lLDid~GtY--P~VTSS 227 (411)
+.|.||..|. ..++++.+. ++..-+++|. |+|.| ||-+=|
T Consensus 59 ~~L~pyftd~~~~~F~~EN~~~e~~g~i~~Gs-------d~~~yyIPfFsf~ 103 (122)
T PF13158_consen 59 EILDPYFTDEYASVFLNENLVEEKQGYITYGS-------DFGEYYIPFFSFS 103 (122)
T ss_pred HHhhhhhhhHHHHHHHHhhccccccCceeecC-------cchhhcccccccc
Confidence 5788999885 567777654 4556666665 89998 885544
No 33
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.09 E-value=45 Score=34.28 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=49.2
Q ss_pred CccCCCCcchhhhccccccC--cceEeeCCCCCcHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhcccccc
Q 015193 112 FIGTTRRGIGPAYSSKVIRN--GIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITD 189 (411)
Q Consensus 112 ~iGTTgrGIGpay~dk~~R~--gir~~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~d 189 (411)
++|-+|-|+|..|+..+.+. +.++.-+.|.+ .+|.+++.+.+.. +. -.+++++++. ..--++.
T Consensus 5 rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~--~erA~~~A~~~gi--~~----y~~~eell~d-------~Di~~V~ 69 (343)
T TIGR01761 5 SVVVCGTRFGQFYLAAFAAAPERFELAGILAQG--SERSRALAHRLGV--PL----YCEVEELPDD-------IDIACVV 69 (343)
T ss_pred EEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCC--HHHHHHHHHHhCC--Cc----cCCHHHHhcC-------CCEEEEE
Confidence 56777778999988766554 57777776654 4555665554431 10 1235655531 1111112
Q ss_pred h---------HHHHHHHHHcCCcEEEEec
Q 015193 190 T---------VHFMNESIAQKRKILVEGG 209 (411)
Q Consensus 190 ~---------~~~l~~al~~gk~iLfEGa 209 (411)
+ ..+..+++++||+||+|=.
T Consensus 70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 70 VRSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred eCCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 1 3566778999999999854
No 34
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.53 E-value=92 Score=30.12 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=22.6
Q ss_pred eeEecCCeEechHHHHHHHHHhHhCCCCCCCceEEeCCce
Q 015193 52 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAH 91 (411)
Q Consensus 52 ~~~ig~GvVv~p~~l~~Ei~~L~~~g~~~~~rL~IS~rAh 91 (411)
.++||.|.|+||+++-+ +.+.| .++.||+..|
T Consensus 64 ~~lIGAGTVL~~~q~~~----a~~aG----a~fiVsP~~~ 95 (211)
T COG0800 64 EALIGAGTVLNPEQARQ----AIAAG----AQFIVSPGLN 95 (211)
T ss_pred ccEEccccccCHHHHHH----HHHcC----CCEEECCCCC
Confidence 47899999999999833 33444 4577777544
No 35
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=21.51 E-value=77 Score=31.00 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEe
Q 015193 379 KGAREFVERIEELVGVPINYIG 400 (411)
Q Consensus 379 ~~a~~yi~~ie~~~gvpv~~is 400 (411)
.|.+.|+++|++.+|.+|.+||
T Consensus 71 ~N~~~~~~~i~~~tGi~i~iIs 92 (285)
T PF02541_consen 71 KNSDEFLDRIKKETGIDIEIIS 92 (285)
T ss_dssp TTHHHHHHHHHHHHSS-EEEE-
T ss_pred cCHHHHHHHHHHHhCCceEEec
Confidence 5899999999999999999997
No 36
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=20.95 E-value=90 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEeeCCC
Q 015193 378 PKGAREFVERIEELVGVPINYIGVGPG 404 (411)
Q Consensus 378 P~~a~~yi~~ie~~~gvpv~~is~Gp~ 404 (411)
+-..+.||+.+++.-|+.|++||.|..
T Consensus 42 ~~Tl~~li~~~~~~~~lev~ml~~g~~ 68 (125)
T PF09358_consen 42 DMTLQELIDYFKEKYGLEVTMLSQGVS 68 (125)
T ss_dssp --BHHHHHHHHHHTTS-EEEEEEETTE
T ss_pred CCCHHHHHHHHHHHhCceEEEEEeCCE
Confidence 466899999999999999999999974
No 37
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.95 E-value=34 Score=37.08 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=33.8
Q ss_pred HhcccccchHHHHHHHHHcCCcEEEEecccccc---cccCCCCCcccCCCCCc
Q 015193 182 RLEPFITDTVHFMNESIAQKRKILVEGGQATML---DIDFGTYPFVTSSSPSA 231 (411)
Q Consensus 182 ~l~~~i~d~~~~l~~al~~gk~iLfEGaQG~lL---Did~GtYP~VTSSnt~~ 231 (411)
-++||+--+..++-.|...+.+++|+|. |+.| |.+.+++||+|-.-|..
T Consensus 286 sW~~~Le~~~~IFiRA~~ssr~l~F~~~-~a~is~~d~~ir~~PFttkRPt~~ 337 (591)
T KOG2505|consen 286 SWKKYLEKADLIFIRAPASSRNLFFEGD-GAGISTGDPRIRTFPFTTKRPTIK 337 (591)
T ss_pred HHHHHHccCCeEEEEccccccceeecCC-CCccCCCCCcccccCCCCCCCchH
Confidence 3444544444444466777889999875 4555 68899999999987764
No 38
>PF08905 DUF1850: Domain of unknown function (DUF1850); InterPro: IPR015001 This entry contains proteins, which are functionally uncharacterised. Some members of this family appear to be miss-annotated as RocC an amino acid transporter from Bacillus subtilis.
Probab=20.41 E-value=1.9e+02 Score=23.69 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=21.3
Q ss_pred ccCCCcEEEEecCCCCCCcEEEecCCeEEEEe
Q 015193 9 ISLPSTSTSLLAGGANAGHTIYNAEGKKFALH 40 (411)
Q Consensus 9 l~~~~d~VvRf~GG~NAGHTVv~~~g~~~~lh 40 (411)
.-++.+-+.=..|...|.|++. .+|+.|.|.
T Consensus 60 ~~~~~~~l~l~v~~~~~~~~l~-~~g~~~~L~ 90 (91)
T PF08905_consen 60 INRPFPELRLRVGPVIANHRLC-VDGKEYPLS 90 (91)
T ss_pred CCccCCeEEEEECcccCceEEE-ECCEEEeCc
Confidence 4555543333334469999999 999998774
No 39
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.30 E-value=92 Score=27.72 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCe
Q 015193 376 DLPKGAREFVERIEELVGVPI 396 (411)
Q Consensus 376 ~LP~~a~~yi~~ie~~~gvpv 396 (411)
+.|.+.++|++++++.+|||.
T Consensus 107 ~~P~~V~~Y~~~~s~~t~V~L 127 (128)
T cd03199 107 VFPPKVKAYLERMSALTKVPL 127 (128)
T ss_pred CCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999984
No 40
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.21 E-value=1e+02 Score=27.45 Aligned_cols=29 Identities=38% Similarity=0.693 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHH----HhCCCeEEEeeCC
Q 015193 375 SDLPKGAREFVERIEE----LVGVPINYIGVGP 403 (411)
Q Consensus 375 ~~LP~~a~~yi~~ie~----~~gvpv~~is~Gp 403 (411)
.++|.+++.|.+.|++ +-|+++.+++.|-
T Consensus 60 Ge~p~~~~~f~~~L~~~~~~l~g~~~aVfGlGd 92 (146)
T PRK09004 60 GDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGS 92 (146)
T ss_pred CCCChhHHHHHHHHHhcCCCCCCCEEEEEeecC
Confidence 4799999999999975 6678999999884
Done!