RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015193
(411 letters)
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 673 bits (1740), Expect = 0.0
Identities = 344/391 (87%), Positives = 371/391 (94%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTIYN+EGKKFALHLVPSGILNEDT CVIGNGVVVHLPGLF EIDGLE+NGVSC
Sbjct: 53 GGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSC 112
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
KGRILVSDRAHLLFDFHQE+DGLRE+ELAKSFIGTT+RGIGPAYSSKVIRNGIRV DLRH
Sbjct: 113 KGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRH 172
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQ 200
MDT PQKLDLLLSDAAARF G KYTP++LREEVE YKR+A+RLEP+ITDTVHF+N+SI+Q
Sbjct: 173 MDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQ 232
Query: 201 KRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVG 260
K+K+LVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRVG
Sbjct: 233 KKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVG 292
Query: 261 SGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320
SGPFPTE G GGD LRLAGQEFGTTTGRPRRCGWLD+VALK+ CQING +SLNLTKLDV
Sbjct: 293 SGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDV 352
Query: 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKG 380
LS+L EIQLGVAYK+ DGTPVKSFP DL LLE+L VEYEVLPGW+SDISSVRNYSDLPK
Sbjct: 353 LSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKA 412
Query: 381 AREFVERIEELVGVPINYIGVGPGRDALIYK 411
A+++VERIEELVGVPI+YIG+GPGRDALIYK
Sbjct: 413 AQQYVERIEELVGVPIHYIGIGPGRDALIYK 443
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 622 bits (1606), Expect = 0.0
Identities = 168/396 (42%), Positives = 246/396 (62%), Gaps = 12/396 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTI KK+ALHL+P G+L ++ + V+GNG+V+H+ L EI+ + +
Sbjct: 48 GGANAGHTIS-VNDKKYALHLLPCGVLYDNNISVLGNGMVIHVKSLMEEIESVGGKLL-- 104
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAK--SFIGTTRRGIGPAYSSKVIRNGIRVCDL 138
R+ +S++AH+LFD HQ ID ++E + K IGTT+RGIGP YS+K R GIR+ L
Sbjct: 105 -DRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTL 163
Query: 139 RHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI 198
++ + F L+ + +Y + +E+ + + +L I D + FMN ++
Sbjct: 164 KNFENFKNMYSKLIDHLMDLYNITEYDKE---KELNLFYNYHIKLRDRIVDVISFMNTNL 220
Query: 199 AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTR 258
+K+L+EG A MLDIDFGTYP+VTSS + GG+ +GLGI + + ++GVVK+Y TR
Sbjct: 221 ENNKKVLIEGANAAMLDIDFGTYPYVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTR 280
Query: 259 VGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKL 318
VG GPF TE+ G LR G E+GTTT RPRRCGWLD+ L Y IN + +NLTKL
Sbjct: 281 VGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKL 340
Query: 319 DVLSELPEIQLGVAYK-QFDGTPVK--SFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 375
DVLS L EI L V +K + G ++ +P + + E+ + YE GW+ DIS+ +
Sbjct: 341 DVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFD 400
Query: 376 DLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 411
+LP+ A++++ IE+ + PI +IGVGP R +I K
Sbjct: 401 ELPENAKKYILAIEKYLKTPIVWIGVGPNRKNMIVK 436
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 618 bits (1597), Expect = 0.0
Identities = 187/397 (47%), Positives = 272/397 (68%), Gaps = 13/397 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ + ++ HL+PSGI+N + IGNGVV+HLPGLF E + G
Sbjct: 65 GGNNAGHTVV-VDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGL 123
Query: 81 KG---RILVSDRAHLLFDFHQEIDGLREAELAKSF---IGTTRRGIGPAYSSKVIRNGIR 134
+G R+++SDRAH++FDFHQ DG++E + + +GTT++GIGP YSSK R+G+R
Sbjct: 124 EGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLR 183
Query: 135 VCDLRH-MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHF 193
+CDL D F ++ +L + + +P L+ + E++K K + E+++P + D V+F
Sbjct: 184 MCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIE---GELQKLKGYMEKIKPMVRDGVYF 240
Query: 194 MNESI-AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVV 252
+ E++ +KILVEG A +LDIDFGTYPFVTSS+ + GG+CTGLG+ P+ VG++ GVV
Sbjct: 241 LYEALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVV 300
Query: 253 KAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSS 312
KAYTTRVG G FPTE + G+ L+ G+EFG TTGR RRCGWLD+V LKY ING ++
Sbjct: 301 KAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTA 360
Query: 313 LNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVR 372
L LTKLD+L EI++GVAYK DG + PA+ +L +++V+Y+ LPGW +DIS+ R
Sbjct: 361 LALTKLDILDMFTEIKVGVAYK-LDGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNAR 419
Query: 373 NYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
+ +LP A+ +V IE+ + +P+ +IGVG R+++I
Sbjct: 420 AFKELPVNAQNYVRFIEDELQIPVKWIGVGKSRESMI 456
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 578 bits (1492), Expect = 0.0
Identities = 171/390 (43%), Positives = 236/390 (60%), Gaps = 2/390 (0%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ G+K LHL+PSGIL E+ + +IGNGVV+ L E+ LEA GV
Sbjct: 36 GGHNAGHTLVI-NGEKTVLHLIPSGILRENVISIIGNGVVLAPDALMKEMTELEARGVPV 94
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+L+S+ L+ +H +D RE IGTT RGIGPAY KV R G+RV DL +
Sbjct: 95 RERLLLSEACPLILPYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVSDLFN 154
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEV-EKYKRFAERLEPFITDTVHFMNESIA 199
+TF KL ++ + V ++V + A+ L + D ++ +
Sbjct: 155 KETFAIKLKEIVEYHNFQLVHYYKEAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARK 214
Query: 200 QKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRV 259
Q I+ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G+VKAY+TRV
Sbjct: 215 QGELIMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRV 274
Query: 260 GSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319
G+GPFPTE+ + G+ LR G E+G TTGR RR GWLD+VA++ QIN LS +TKLD
Sbjct: 275 GAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLD 334
Query: 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPK 379
VL L E++L V Y+ DG V + P E ++ YE +PGW V+ +S LP+
Sbjct: 335 VLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQ 394
Query: 380 GAREFVERIEELVGVPINYIGVGPGRDALI 409
A +++R+EEL GVPI+ I GP RD +
Sbjct: 395 AALNYIQRVEELTGVPIDIISTGPDRDETM 424
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter
jejuni}
Length = 419
Score = 571 bits (1475), Expect = 0.0
Identities = 164/389 (42%), Positives = 237/389 (60%), Gaps = 10/389 (2%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHTI+ G ++ALHL+PSG+L+ + +IGNGVVV L E+ E
Sbjct: 39 GGHNAGHTIW-VNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLK--- 94
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
GR+ +SDRAHL H ID +E K+ IGTT +GIGP+Y+ K+ R G RV +L
Sbjct: 95 -GRLYISDRAHLNLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLE 153
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQ 200
+ L F L+ E + KRF E L P+ITDT + +++ +
Sbjct: 154 PQRLCEALIKDFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDE 213
Query: 201 KRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVG 260
+++L+EG Q +MLDID GTYP+VTSSS + G TGLG+ P+ G++IG+VKAY TRVG
Sbjct: 214 DKRVLLEGAQGSMLDIDHGTYPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVG 273
Query: 261 SGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDV 320
+G FPTE G+ G+++ G+E G +TGR RRCGW D VA++Y ++NGL +L+L KLDV
Sbjct: 274 NGAFPTEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDV 333
Query: 321 LSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKG 380
L +I++ AY+ + G + P+D LE ++ YE + GW + +++Y LP+
Sbjct: 334 LDGFEKIKICRAYE-YKGMEIDYIPSD---LENVQPIYEEMDGWD-KVFGIKDYDLLPEN 388
Query: 381 AREFVERIEELVGVPINYIGVGPGRDALI 409
A++++ R+EEL GV + YI P RD I
Sbjct: 389 AKKYIARLEELAGVKVKYISTSPERDDTI 417
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 570 bits (1471), Expect = 0.0
Identities = 166/398 (41%), Positives = 218/398 (54%), Gaps = 11/398 (2%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GG NAGHT+ GKK L L+PSGI+ E C IGNGVV+ LF EI LE G+S
Sbjct: 49 GGHNAGHTLI-IGGKKTILRLIPSGIMREGVACYIGNGVVLSPEALFKEIGELEEAGLSV 107
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRH 140
+ R+ +S+ L+ +H ID REA IGTT RGIGPAY KV R +RV DL
Sbjct: 108 RERLFISEATTLILPYHIAIDQAREARKGAGKIGTTGRGIGPAYEDKVGRRALRVQDLFD 167
Query: 141 MDTFPQKLDLLLSDAAARFPGLKYTPDVLREEV-EKYKRFAERLEPFITDTVHFMNESIA 199
TF +L L V + + +A+RL P + D + E
Sbjct: 168 ARTFADRLRENLDFHNFVLTQYLGGAAVDFQATLDTMLGYADRLRPMVADVSRRLYEENH 227
Query: 200 QKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRV 259
R +L EG Q T+LDID GTYPFVTSS+ AG G G+ P+ + ++G+ KAY TRV
Sbjct: 228 AGRNLLFEGAQGTLLDIDHGTYPFVTSSNCVAGAAAAGAGVGPQKLNYILGITKAYCTRV 287
Query: 260 GSGPFPTEIFGQG--------GDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLS 311
GSGPFP+E++ G L G+EFG+ TGRPRR GWLD AL+ QING+S
Sbjct: 288 GSGPFPSELYDADNPSRQDQIGITLANVGKEFGSVTGRPRRTGWLDAAALRRSIQINGVS 347
Query: 312 SLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSV 371
L +TKLDVL L E++L V YK DG P + + + YE GW+ +
Sbjct: 348 GLCMTKLDVLDGLDEVKLCVGYK-IDGEDADLLPRGAAEVARCEPVYETFGGWKESTVGI 406
Query: 372 RNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 409
++ LP AR ++ R++E+ GVPI+ + GP RD I
Sbjct: 407 NSWDALPANARAYLTRVQEVAGVPIDMVSTGPDRDETI 444
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved
hypothetical protein, NPPSFA; 2.50A {Pyrococcus
horikoshii}
Length = 339
Score = 436 bits (1123), Expect = e-153
Identities = 115/391 (29%), Positives = 177/391 (45%), Gaps = 92/391 (23%)
Query: 20 AGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79
G NAGH++ GKK+A+ +P+G + +IG GV+V F+E++ L+ V
Sbjct: 36 GVGTNAGHSVV-INGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEVFFHELEQLKDFNV- 93
Query: 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLR 139
K R+ + R ++ + H+++D K IGTT G GPA + +V+R + D++
Sbjct: 94 -KDRVGIDYRCAIIEEKHKQLDRTNGYLHGK--IGTTGSGCGPANADRVMRKAKQAKDVK 150
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIA 199
LEP++TD +N+++
Sbjct: 151 ------------------------------------------ELEPYLTDVAQEINDALD 168
Query: 200 QKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRV 259
+ +LVEG Q L + +GTYP+VTS +A + +GI P V ++I V K++ TRV
Sbjct: 169 EGSLVLVEGTQGFGLSLYYGTYPYVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRV 228
Query: 260 GSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319
G+GPFPTE+ + DRL E+GT TGR RR GW D +Y +ING + L +T LD
Sbjct: 229 GAGPFPTEMPMEEADRLG--LVEYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLD 286
Query: 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPK 379
+ + V +Y LP+
Sbjct: 287 KYDK-------------------------------------------EAFGVTDYDKLPR 303
Query: 380 GAREFVERIEELVGVPINYIGVGPGRDALIY 410
A+EF+E IEE VGVP+ I GP + +I
Sbjct: 304 KAKEFIEEIEERVGVPVGLIKTGPELEHIID 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 81/501 (16%), Positives = 141/501 (28%), Gaps = 175/501 (34%)
Query: 2 KAKASSSISLPSTSTSLLAGGANAGHT-IY-------NAEG------------------- 34
A+ + S S L G+ + N +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 35 -KKFALHLVPSGILNEDTVCVIGNGVVVH--L--PGLFNEIDGLEANGVSCKGRILVSDR 89
K A L D V G+ + L P + D L + +SC I V
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQL 246
Query: 90 AHLLFDFHQEIDGLREAELAKSFIGTTRRGIG------PAYSS------KVIRNGIRV-- 135
AH + G EL G T G A + +R I V
Sbjct: 247 AHYVVTAKLL--GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 136 -CDLRHMDTFPQKLDL---LLSDAAARFPGLKYTP-----DVLREEVEKYKRFAERLEPF 186
+R + +P L +L D+ G+ +P ++ +E+V+ Y
Sbjct: 305 FIGVRCYEAYPN-TSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDY---------- 352
Query: 187 ITDTVHFMNESIAQKRKI---LVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPR 243
+ T N + +++ LV G + V S P
Sbjct: 353 VNKT----NSHLPAGKQVEISLVNGAKN-----------LVVSGPPQ------------- 384
Query: 244 VVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGW--LDVVA- 300
L G+ R P G D+ R+ F + R + L V +
Sbjct: 385 ---SLYGLNLTL--RKAKAP-------SGLDQSRI---PF---SERKLKFSNRFLPVASP 426
Query: 301 -----LKYCCQINGLSSLNLTKLDVLSELPEI---QLGVA-YKQFDGTPVKSFPADLL-- 349
L + +L D++ + + Y FDG+ ++ +
Sbjct: 427 FHSHLLV--------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 350 LLEQL---KVEYE---------VL---PGWQSDISSVRNYSDLPKGAREFVERIEELVGV 394
+++ + V++E +L PG S + + R ++ GV
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL-------------THRNKDGTGV 525
Query: 395 PINYIGVG---PGRDALI-YK 411
+ I G D +K
Sbjct: 526 RV--IVAGTLDINPDDDYGFK 544
Score = 46.6 bits (110), Expect = 1e-05
Identities = 69/426 (16%), Positives = 126/426 (29%), Gaps = 145/426 (34%)
Query: 84 ILVSDRAHLLF-----DFHQEI----DGLR-------EAELAKSFIGTTRRGIGPAYSSK 127
+LV + + F++ + +G AEL F+G + P+ +
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 128 ---VIRNGIR---------------VCDLRHMD--TFPQKLDLL---------------- 151
V+ + L + T + +L+
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 152 -----LSDAAAR--------FPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI 198
L A F G T D E + Y+ + + I + ++E I
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 199 AQK---RKILVEGGQATMLDI-DFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKA 254
K+ +G L+I ++ P S++P + + P + LIGV++
Sbjct: 200 RTTLDAEKVFTQG-----LNILEWLENP---SNTPDKDYLLS----IP-ISCPLIGVIQL 246
Query: 255 ---YTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLS 311
T G P E+ L+ G T +V + +
Sbjct: 247 AHYVVTAKLLGFTPGELR----SYLK------GATG-----HS-QGLVTAVAIAETDSWE 290
Query: 312 SLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLL--------------L----LEQ 353
S ++ ++ L +GV + P S P +L L L Q
Sbjct: 291 SFFVSVRKAITVL--FFIGVRCYE--AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 354 LKVEYEV------LPGWQSDIS-SVRNYSDLPKGAREFVERI----EELVGVPINY--IG 400
+V+ V LP + S+ N GA+ V + + L G+ +
Sbjct: 347 EQVQDYVNKTNSHLPA-GKQVEISLVN------GAKNLV--VSGPPQSLYGLNLTLRKAK 397
Query: 401 VGPGRD 406
G D
Sbjct: 398 APSGLD 403
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 50/386 (12%), Positives = 96/386 (24%), Gaps = 144/386 (37%)
Query: 34 GKKFALHLVPSGILNEDTVCVIGNGV--------------VVHLPGLFNEIDGLEANGVS 79
GK + + L+ C + + + L L +ID
Sbjct: 162 GKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-------- 210
Query: 80 CKGRILVSDRAHLLFDFHQEIDGLR----EAELAKSFIGTTRRGIGPAYSSKVIRNGIRV 135
+++ H LR + V+ N V
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------------VLLN---V 253
Query: 136 CDLRHMDTFPQKLD-----LLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDT 190
+ + + F + LL + RF + D L + D
Sbjct: 254 QNAKAWNAF----NLSCKILLTT----RFKQVT---DFLSAATTTHISLDHHSMTLTPD- 301
Query: 191 VHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIG 250
E + +L LD P L PR + +I
Sbjct: 302 -----EV----KSLL-----LKYLDCRPQDLP------REV------LTTNPRRLS-II- 333
Query: 251 VVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGL 310
+ +R + T W V + L
Sbjct: 334 ----------------------AESIR----DGLATWDN-----WKHV-------NCDKL 355
Query: 311 SSLNLTKLDVLSELPEIQLGVAYKQF----DGTPVKSFPADLL-LLEQLKVEYEVLPGWQ 365
+++ + L+VL E + + + + P LL L+ ++ +V
Sbjct: 356 TTIIESSLNVLEP-AEYR--KMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDV----M 405
Query: 366 SDISSVRNYSDLPKGAREFVERIEEL 391
++ + YS + K +E I +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI 431
Score = 36.4 bits (83), Expect = 0.017
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 29/122 (23%)
Query: 315 LTK--LDVLSELPEIQLGVAYKQFD------GTPVKSFPADLL------LLEQLKVEYEV 360
L+K +D + + G + F V+ F ++L L+ +K E
Sbjct: 46 LSKEEIDHIIMSKDAVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 361 LPGWQSDISSVRN--YSDLPKGAREFVERIEELVGV--------PINYIGV----GPGRD 406
R+ Y+D A+ V R++ + + P + + G G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 407 AL 408
+
Sbjct: 165 WV 166
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.074
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 15/56 (26%)
Query: 166 PDVLREEVEKYK----RFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDID 217
D L +E E + +RL+ ++ + + E + D++
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQE--------LDAASKVMEQEWREKAKK---DLE 121
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 30.7 bits (69), Expect = 0.73
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 105 EAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAAR------ 158
E +LA S A++S +I +R D +DT Q L L +
Sbjct: 26 ERDLAASCPDRDLFR---AFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSL 82
Query: 159 --FPGLKYTPDVLREEVEKYKRFAERLEP 185
G +Y + + EV+ + RL
Sbjct: 83 HIINGDEY--EKIVREVQLLRPLFTRLTL 109
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 102 GLREAELAKSFIGTTRRG-IGPAYSSKVIRNGIRVCDL---RHMDTFPQKLDLLLSDAAA 157
G E E+ ++++ T+ Y + ++ L P L DA A
Sbjct: 189 GKSEFEIQQAYLLATQHSENDNPYGN-IVALNENCAILHYTHFDRVAPATHRSFLIDAGA 247
Query: 158 RFPGLKYTPDVLR 170
F G Y D+ R
Sbjct: 248 NFNG--YAADITR 258
>2iec_A Uncharacterized protein conserved in archaea; tetramer with
intra-molecular and inter-molecular disufide bonds,
structural genomics, PSI-2; 2.33A {Methanopyrus
kandleri} SCOP: d.316.1.1
Length = 131
Score = 28.3 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 327 IQLGVAYKQFDGTPVKSFPADLL 349
I LG Y QF GTPV A+ +
Sbjct: 21 ITLGAIYHQFCGTPVSPGTAEEV 43
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function,
NYSGXRC, PSI-2, prote structure initiative; HET: MSE
OXG; 1.89A {Methanocaldococcus jannaschii}
Length = 122
Score = 27.9 bits (62), Expect = 2.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 327 IQLGVAYKQFDGTPVKSFPADLL 349
I LG + QF GTPV + + L
Sbjct: 29 ITLGALFHQFVGTPVSKYNKESL 51
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI,
protein structur initiative; 2.08A {Picrophilus
torridus} SCOP: d.316.1.1
Length = 121
Score = 27.9 bits (62), Expect = 2.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 327 IQLGVAYKQFDGTPVKSFPADLL 349
I+LG + Q+ G PV S A +
Sbjct: 24 IKLGAIFHQYTGIPVNSENASMA 46
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 28.6 bits (64), Expect = 3.5
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 33/146 (22%)
Query: 121 GPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLK----------------- 163
++ + + +T +++ +FP LK
Sbjct: 177 DMQMDGRMAKYWLPWLVGMPAETTIAICSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRI 236
Query: 164 ---YTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDID--- 217
++ + + L F TD + S+ K+L + ++ D
Sbjct: 237 SHGFSMRPDLCAQDNPMNPKKYLGSFYTDALVHDPLSL----KLLTD-----VIGKDKVI 287
Query: 218 FGT-YPFVTSSSPSAGGICTGLGIAP 242
GT YPF I +
Sbjct: 288 LGTDYPFPLGELEPGKLIESMEEFDE 313
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 28.5 bits (64), Expect = 4.1
Identities = 10/51 (19%), Positives = 14/51 (27%)
Query: 360 VLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIY 410
+L W D S +N L I+ VG + Y
Sbjct: 199 ILYPWGHDGSLSQNALGLHTVGVAMASVIQSNALPNFPPYTVGNSALVIGY 249
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl
protease, hydrolase; 1.70A {Trichoderma reesei} PDB:
3c9y_A* 3emy_A*
Length = 329
Score = 28.4 bits (64), Expect = 4.2
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 28/86 (32%)
Query: 12 PSTSTSLLAGGANAGHTIYNAE---------GKKFALH----LVPSGILNEDTVCVIGN- 57
S+ T + GH IY G +++ SG + D V IG
Sbjct: 44 FSSETPKSSA---TGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVYTDKVT-IGGF 99
Query: 58 -------GVVVHLPGLFNE---IDGL 73
+ F + I GL
Sbjct: 100 SVNTQGVESATRVSTEFVQDTVISGL 125
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 28.4 bits (64), Expect = 5.0
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 374 YSDLPKGAREFVERIEELVG---VPINYIG------VGPGRDALIY 410
Y++ + A E++ V +G VGP A+
Sbjct: 269 YANDSEAAENLKEQLLANEKIKNVVTLPLGPVISTHVGPNTLAVFT 314
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding
protein, lipid binding protein, PSI, structural
genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Length = 282
Score = 27.9 bits (63), Expect = 5.6
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 374 YSDLPKGAREFVERIEELVGVPI--NYIG------VGPGRDALIY 410
Y+ A ERI I G G G A++
Sbjct: 235 YAGEASLALTLKERIAAYYNHSISVLETGSIIQTHTGEGAFAVMV 279
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 28.3 bits (64), Expect = 5.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 379 KGAREFVERIEELVGVPINYIGVG 402
K ARE ER++ L+G + +
Sbjct: 67 KAAREMRERVQSLLGGAAEDVWIS 90
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 28.0 bits (62), Expect = 5.7
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHF 193
+ +T +L+ LL + F + T + E ++R A L I V F
Sbjct: 22 YRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEF 75
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 27.9 bits (63), Expect = 7.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 359 EVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIY 410
+ +++ +R+Y + A + + + V N I V G A Y
Sbjct: 32 HLEKHLVENLNCIRHYPE--PDAGTLRQMLAKRNSVDNNAILVTNGPTAAFY 81
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 27.6 bits (62), Expect = 7.6
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 374 YSDLPKGAREFVERIEELVG---VPINYIG------VGPGRDALIY 410
+++ + A + +E + +Y G +G G + +
Sbjct: 267 HANREEEAAKIIEELSAKYPHVEFYNSYFGAVIGTHLGEGALGICW 312
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Length = 315
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 381 AREFVERIEELVGVPINYIGVGPGRD--ALIY 410
+ ++RI++ V + + I G LI+
Sbjct: 91 KQVLIDRIKKEVNIDVEVI---DGAREAELIF 119
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB:
2is6_A* 2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 27.8 bits (63), Expect = 7.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 379 KGAREFVERIEELVGVPINYIGVG 402
K A E RI +L+G + VG
Sbjct: 65 KAAAEMRHRIGQLMGTSQGGMWVG 88
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair,
sequence context; HET: DNA 08Q; 1.60A {Geobacillus
stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A*
3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A*
2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A*
3sar_A* 3sav_A* ...
Length = 273
Score = 27.5 bits (62), Expect = 8.1
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 239 GIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRR 292
+ P +VG I V+ + + P +E F R+ GQ RR
Sbjct: 12 TLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAA-----RMIGQTVRGLE---RR 57
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 27.5 bits (62), Expect = 8.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 374 YSDLPKGAREFVERIEELVG---VPINYIG------VGPGRDALIY 410
++D + A E + IEE G ++ IG GPG AL +
Sbjct: 237 HADDEETALELKQMIEETHGCTRFFLSDIGSAIGAHAGPGTIALFF 282
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 27.8 bits (63), Expect = 8.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 356 VEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEE-----LVGVPINYIG 400
V Y V + ++ VRN D P A +E +EE + P Y+G
Sbjct: 372 VIYRVKKKFTDEVIEVRNPMDFPDNA-GLIEYVEEPFVLVTIITPKEYVG 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.412
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,611,569
Number of extensions: 433650
Number of successful extensions: 1222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1190
Number of HSP's successfully gapped: 46
Length of query: 411
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 315
Effective length of database: 4,021,377
Effective search space: 1266733755
Effective search space used: 1266733755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)