RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015193
(411 letters)
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 399 bits (1027), Expect = e-138
Identities = 344/392 (87%), Positives = 371/392 (94%)
Query: 20 AGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79
GGANAGHTIYN+EGKKFALHLVPSGILNEDT CVIGNGVVVHLPGLF EIDGLE+NGVS
Sbjct: 38 QGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVS 97
Query: 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLR 139
CKGRILVSDRAHLLFDFHQE+DGLRE+ELAKSFIGTT+RGIGPAYSSKVIRNGIRV DLR
Sbjct: 98 CKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLR 157
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIA 199
HMDT PQKLDLLLSDAAARF G KYTP++LREEVE YKR+A+RLEP+ITDTVHF+N+SI+
Sbjct: 158 HMDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSIS 217
Query: 200 QKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRV 259
QK+K+LVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRV
Sbjct: 218 QKKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRV 277
Query: 260 GSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLD 319
GSGPFPTE G GGD LRLAGQEFGTTTGRPRRCGWLD+VALK+ CQING +SLNLTKLD
Sbjct: 278 GSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLD 337
Query: 320 VLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPK 379
VLS+L EIQLGVAYK+ DGTPVKSFP DL LLE+L VEYEVLPGW+SDISSVRNYSDLPK
Sbjct: 338 VLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPK 397
Query: 380 GAREFVERIEELVGVPINYIGVGPGRDALIYK 411
A+++VERIEELVGVPI+YIG+GPGRDALIYK
Sbjct: 398 AAQQYVERIEELVGVPIHYIGIGPGRDALIYK 429
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 388 bits (998), Expect = e-133
Identities = 167/392 (42%), Positives = 235/392 (59%), Gaps = 2/392 (0%)
Query: 20 AGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79
GG NAGHT+ G+K LHL+PSGIL E+ +IGNGVV+ L E+ LE G+
Sbjct: 34 QGGHNAGHTLVI-NGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIP 92
Query: 80 CKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLR 139
+ R+L+S+ L+ D+H +D RE IGTT RGIGPAY KV R G+RV DL
Sbjct: 93 VRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLF 152
Query: 140 HMDTFPQKLDLLLSDAAARFPGL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI 198
+TF +KL ++ + K ++ ++ A+ L + D ++++
Sbjct: 153 DKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQAR 212
Query: 199 AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTR 258
+ ++ EG Q T+LDID GTYP+VTSS+ +AGG+ TG G+ PR V ++G++KAY+TR
Sbjct: 213 QRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTR 272
Query: 259 VGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKL 318
VG+GPFPTE+F + G+ L G EFG TTGR RR GWLD VA++ Q+N LS LTKL
Sbjct: 273 VGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKL 332
Query: 319 DVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLP 378
DVL L E++L VAY+ DG V + P + ++ YE +PGW V++ S LP
Sbjct: 333 DVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLP 392
Query: 379 KGAREFVERIEELVGVPINYIGVGPGRDALIY 410
+ A +++RIEEL GVPI+ I GP R +
Sbjct: 393 QAALNYIKRIEELTGVPIDIISTGPDRTETMI 424
>d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 424
Score = 362 bits (931), Expect = e-124
Identities = 166/396 (41%), Positives = 240/396 (60%), Gaps = 12/396 (3%)
Query: 21 GGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSC 80
GGANAGHTI KK+ALHL+P G+L ++ + V+GNG+V+H+ L EI+ +
Sbjct: 35 GGANAGHTISV-NDKKYALHLLPCGVLYDNNISVLGNGMVIHVKSLMEEIESVGGK---L 90
Query: 81 KGRILVSDRAHLLFDFHQEIDGLREAE--LAKSFIGTTRRGIGPAYSSKVIRNGIRVCDL 138
R+ +S++AH+LFD HQ ID ++E + IGTT+RGIGP YS+K R GIR+ L
Sbjct: 91 LDRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTL 150
Query: 139 RHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI 198
++ + F L+ + +Y +E+ + + +L I D + FMN ++
Sbjct: 151 KNFENFKNMYSKLIDHLMDLYNITEYDK---EKELNLFYNYHIKLRDRIVDVISFMNTNL 207
Query: 199 AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTR 258
+K+L+EG A MLDIDFGTYP+VTSS + GG+ +GLGI + + ++GVVK+Y TR
Sbjct: 208 ENNKKVLIEGANAAMLDIDFGTYPYVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTR 267
Query: 259 VGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKL 318
VG GPF TE+ G LR G E+GTTT RPRRCGWLD+ L Y IN + +NLTKL
Sbjct: 268 VGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKL 327
Query: 319 DVLSELPEIQLGVAY---KQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 375
DVLS L EI L V + K + +P + + E+ + YE GW+ DIS+ +
Sbjct: 328 DVLSGLEEILLCVNFKNKKTGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFD 387
Query: 376 DLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 411
+LP+ A++++ IE+ + PI +IGVGP R +I K
Sbjct: 388 ELPENAKKYILAIEKYLKTPIVWIGVGPNRKNMIVK 423
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 357 bits (916), Expect = e-121
Identities = 187/396 (47%), Positives = 263/396 (66%), Gaps = 9/396 (2%)
Query: 20 AGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS 79
GG NAGHT+ +GK++ HL+PSGI+N V IGNGVV+HLPGLF E + E G+
Sbjct: 37 QGGNNAGHTVVV-DGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLK 95
Query: 80 C-KGRILVSDRAHLLFDFHQEIDGLREAELAKSF---IGTTRRGIGPAYSSKVIRNGIRV 135
+ R+++SDRAHL+FDFHQ +DGL+E + IGTT++GIGP YSSK R G+R+
Sbjct: 96 DWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRI 155
Query: 136 CDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMN 195
CDL L+ + ++++ K FAER+ P + D V+FM
Sbjct: 156 CDLLSDFDEFSARFKNLAHQHQSMF--PTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMY 213
Query: 196 ESIAQKRK-ILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKA 254
E++ K +LVEG A +LDIDFGTYPFVTSS+ + GG+CTGLGI P+ +GD+ GVVKA
Sbjct: 214 EALHGPPKKVLVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKA 273
Query: 255 YTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLN 314
YTTRVG G FPTE + GD L+ G E+G TTGR RRCGWLD++ L+Y +NG ++L
Sbjct: 274 YTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALA 333
Query: 315 LTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNY 374
LTKLD+L L EI++G++YK +G + FPA+ +L++++VEYE LPGW++D + R +
Sbjct: 334 LTKLDILDVLSEIKVGISYK-LNGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARKW 392
Query: 375 SDLPKGAREFVERIEELVGVPINYIGVGPGRDALIY 410
DLP A+ +V +E +GV + ++GVG R+++I
Sbjct: 393 EDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQ 428
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 30.0 bits (67), Expect = 0.42
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFM 194
H+D+ P L S P +E+ ++F + L + +
Sbjct: 10 HLDSGPSTAKLDYSKFQELVL-----PHFGKEDAGDVQQFYDLLSGSLEVIRKWA 59
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786
{Methanopyrus kandleri [TaxId: 2320]}
Length = 113
Score = 28.1 bits (63), Expect = 0.80
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 327 IQLGVAYKQFDGTPVKSFPADLL 349
I LG Y QF GTPV A+ +
Sbjct: 13 ITLGAIYHQFCGTPVSPGTAEEV 35
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218
{Picrophilus torridus [TaxId: 82076]}
Length = 120
Score = 28.1 bits (63), Expect = 0.84
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 327 IQLGVAYKQFDGTPVKSFPADLL 349
I+LG + Q+ G PV S A +
Sbjct: 23 IKLGAIFHQYTGIPVNSENASMA 45
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 27.3 bits (60), Expect = 2.8
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFM 194
H+D+ P L S A + ++ + ++F + L + +
Sbjct: 10 HVDSNPAMTSLDYSRFQANPD-----YQMSGDDTQHIQQFYDLLTGSMEIIRGWA 59
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 333
Score = 27.1 bits (59), Expect = 4.0
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 118 RGIGPAYSSKVIRNGIRVC-DLRHMDTFPQKL 148
GIG + GI C +L L
Sbjct: 281 SGIGKVTEKMLKALGIITCTELYQQRALLSLL 312
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.0 bits (59), Expect = 4.2
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 140 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFM 194
H++T + L F + ++ ++ A ++ I V F
Sbjct: 24 HLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFA 78
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.9 bits (59), Expect = 4.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 140 HMDTFPQ----KLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFM 194
H+ T Q K + P+ + ++E + F + + P IT V F
Sbjct: 19 HVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFA 77
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 24.3 bits (53), Expect = 6.3
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 119 GIGPAYSSKVIRNGIR-VCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVL 169
G+G + K R G R + ++ L + G Y D++
Sbjct: 15 GVGLKTAEKWFRMGFRTLSKIQ------SDKSLRFTQMQK--AGFLYYEDLV 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.412
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,570,403
Number of extensions: 77497
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 14
Length of query: 411
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 324
Effective length of database: 1,213,086
Effective search space: 393039864
Effective search space used: 393039864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)