BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015194
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like Domain
           Of Hypothetical Protein (Arabidopsis Thaliana)
          Length = 107

 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 85/93 (91%)

Query: 2   LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQF 61
           +LR+RSRDGLERV+VDG H+TV++LKT+IQ QL+IP+ +QTLSTN+NLLLAKSPSD L F
Sbjct: 9   MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAF 68

Query: 62  TDMANPDRPLSSLNISHGSIVFLSYDGERNVRG 94
           TDMA+P+  +SSLN++HGS+V+L+Y+GER +RG
Sbjct: 69  TDMADPNLRISSLNLAHGSMVYLAYEGERTIRG 101


>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
           (Aqp4m23) At 3.2 A Resolution By Electron
           Crystallography
          Length = 301

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 30/183 (16%)

Query: 30  IQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRP----LSSLNISHGSIVFLS 85
           +   L +      L+    LL+    +  L FT  A+ D        S+ ++ G  V + 
Sbjct: 119 VVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIG 178

Query: 86  YDGERNVRGPSFNPAGSFGRKMTMDD-----------LIAKQMRVTRQENPHCESVSFDR 134
           +    N  G S NPA SFG  + M +           +I   +     E   C  V   R
Sbjct: 179 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKR 238

Query: 135 DCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEV---NFIYEPPQQGTEEVLYILRDE 191
              +AF +   +T      +G +M    +ED R +V   + I +P   G   V+ I R +
Sbjct: 239 RLKEAFSKAAQQT------KGSYME---VEDNRSQVETEDLILKP---GVVHVIDIDRGD 286

Query: 192 EEE 194
           E++
Sbjct: 287 EKK 289


>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
           By Electron Crystallography
          Length = 301

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 30/183 (16%)

Query: 30  IQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRP----LSSLNISHGSIVFLS 85
           +   L +      L+    LL+    +  L FT  A+ D        S+ ++ G  V + 
Sbjct: 119 VVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIG 178

Query: 86  YDGERNVRGPSFNPAGSFGRKMTMDD-----------LIAKQMRVTRQENPHCESVSFDR 134
           +    N  G S NPA SFG  + M +           +I   +     E   C  V   R
Sbjct: 179 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKR 238

Query: 135 DCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEV---NFIYEPPQQGTEEVLYILRDE 191
              +AF +   +T      +G +M    +ED R +V   + I +P   G   V+ I R +
Sbjct: 239 RLKEAFSKAAQQT------KGSYME---VEDNRSQVETEDLILKP---GVVHVIDIDRGD 286

Query: 192 EEE 194
           E++
Sbjct: 287 EKK 289


>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 30/170 (17%)

Query: 43  LSTNQNLLLAKSPSDLLQFTDMANPDRP----LSSLNISHGSIVFLSYDGERNVRGPSFN 98
           L+    LL+    +  L FT  A+ D        S+ ++ G  V + +    N  G S N
Sbjct: 171 LTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMN 230

Query: 99  PAGSFGRKMTMDD-----------LIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNET 147
           PA SFG  + M +           +I   +     E   C  V   R   +AF +   +T
Sbjct: 231 PARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQT 290

Query: 148 LAFAVKRGGFMYGTVLEDKRVEV---NFIYEPPQQGTEEVLYILRDEEEE 194
                 +G +M    +ED R +V   + I +P   G   V+ I R +E++
Sbjct: 291 ------KGSYME---VEDNRSQVETEDLILKP---GVVHVIDIDRGDEKK 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,055,153
Number of Sequences: 62578
Number of extensions: 357751
Number of successful extensions: 836
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 8
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)