Query 015194
Match_columns 411
No_of_seqs 148 out of 273
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pjh_A Protein NPL4, nuclear p 99.7 2.6E-18 8.9E-23 137.6 5.5 73 1-86 5-79 (80)
2 1wf9_A NPL4 family protein; be 99.5 9.8E-15 3.4E-19 122.6 8.7 95 1-96 8-103 (107)
3 2kzr_A Ubiquitin thioesterase 99.1 1E-10 3.5E-15 94.0 7.7 77 1-89 1-79 (86)
4 3rzv_A STAM-binding protein; u 98.9 7.8E-08 2.7E-12 89.9 18.2 142 126-285 40-184 (211)
5 2znr_A AMSH-like protease; met 98.8 1.2E-07 4E-12 86.5 17.3 140 128-285 9-151 (178)
6 2p8r_A PRP8, PRE-mRNA-splicing 98.8 3.3E-08 1.1E-12 95.1 13.2 113 151-279 58-176 (273)
7 2og4_A PRE-mRNA-splicing facto 98.8 3.8E-08 1.3E-12 93.7 12.6 116 151-281 57-175 (254)
8 3sbg_A PRE-mRNA-splicing facto 98.7 1.2E-07 4.2E-12 97.4 13.9 117 151-281 368-486 (565)
9 1ndd_A NEDD8, protein (ubiquit 98.5 4.9E-07 1.7E-11 69.3 8.8 71 1-87 1-72 (76)
10 3a9j_A Ubiquitin; protein comp 98.5 6E-07 2E-11 68.8 8.6 71 1-87 1-72 (76)
11 1yx5_B Ubiquitin; proteasome, 98.4 1.1E-06 3.9E-11 71.5 8.8 72 1-88 1-73 (98)
12 3phx_B Ubiquitin-like protein 98.4 1.3E-06 4.6E-11 68.0 8.4 71 1-87 5-76 (79)
13 2bwf_A Ubiquitin-like protein 98.3 1.3E-06 4.6E-11 67.3 7.9 71 1-87 5-75 (77)
14 2faz_A Ubiquitin-like containi 98.3 1.5E-06 5E-11 67.5 8.0 71 1-87 3-76 (78)
15 1wy8_A NP95-like ring finger p 98.3 1.3E-06 4.3E-11 69.7 7.8 72 1-88 8-82 (89)
16 1v5o_A 1700011N24RIK protein; 98.3 1.6E-06 5.4E-11 71.6 8.4 73 1-88 8-85 (102)
17 2dzi_A Ubiquitin-like protein 98.3 1.4E-06 4.8E-11 67.8 7.5 70 1-86 8-78 (81)
18 1wx7_A Ubiquilin 3; ubiquitin- 98.3 2.3E-06 7.7E-11 71.0 9.2 74 1-90 18-91 (106)
19 3mtn_B UBA80, ubcep1, ubiquiti 98.3 2.1E-06 7.1E-11 67.3 8.3 72 1-88 4-76 (85)
20 1yqb_A Ubiquilin 3; structural 98.3 1.8E-06 6E-11 71.2 7.6 73 1-89 23-95 (100)
21 3n3k_B Ubiquitin; hydrolase, p 98.3 2.2E-06 7.6E-11 67.3 7.9 72 1-88 4-76 (85)
22 2hj8_A Interferon-induced 17 k 98.3 1.8E-06 6.3E-11 69.1 7.4 72 1-88 5-77 (88)
23 2kan_A Uncharacterized protein 98.3 1.6E-06 5.3E-11 70.7 6.9 72 1-88 16-88 (94)
24 3v6c_B Ubiquitin; structural g 98.3 2.5E-06 8.7E-11 68.5 8.0 70 1-86 18-88 (91)
25 4b4t_V 26S proteasome regulato 98.2 7.4E-06 2.5E-10 80.6 12.7 121 152-281 47-169 (306)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 98.2 2.8E-06 9.6E-11 67.3 7.6 72 1-88 8-80 (87)
27 4hcn_B Polyubiquitin, ubiquiti 98.2 3.6E-06 1.2E-10 68.8 7.9 71 1-87 23-94 (98)
28 4fbj_B NEDD8; effector-HOST ta 98.2 4.8E-06 1.6E-10 66.7 8.1 72 1-88 1-73 (88)
29 3k9o_B Ubiquitin, UBB+1; E2-25 98.2 6.3E-06 2.1E-10 66.5 8.6 72 1-88 2-74 (96)
30 2ojr_A Ubiquitin; lanthide-bin 98.2 6.6E-06 2.3E-10 68.8 8.7 71 1-87 36-107 (111)
31 1wxv_A BAG-family molecular ch 98.1 6.2E-06 2.1E-10 66.3 8.0 72 1-87 8-84 (92)
32 3dbh_I NEDD8; cell cycle, acti 98.1 6.3E-06 2.1E-10 65.2 7.9 71 1-87 13-84 (88)
33 2wyq_A HHR23A, UV excision rep 98.1 8.5E-06 2.9E-10 64.1 8.4 72 1-88 6-81 (85)
34 1uel_A HHR23B, UV excision rep 98.1 1.6E-05 5.5E-10 64.5 10.2 72 1-88 1-76 (95)
35 3b1l_X E3 ubiquitin-protein li 97.4 4.2E-07 1.4E-11 70.2 0.0 70 1-86 1-71 (76)
36 3b08_A Polyubiquitin-C, ubiqui 98.1 9.9E-06 3.4E-10 70.1 8.5 71 1-87 1-72 (152)
37 2klc_A Ubiquilin-1; ubiquitin- 98.1 1.2E-05 4.1E-10 66.2 8.4 72 1-88 26-97 (101)
38 4dwf_A HLA-B-associated transc 98.1 1.1E-05 3.9E-10 64.3 8.0 72 1-89 6-78 (90)
39 3m62_B UV excision repair prot 98.1 8.4E-06 2.9E-10 67.7 7.4 73 1-89 2-75 (106)
40 2uyz_B Small ubiquitin-related 98.1 6.8E-06 2.3E-10 63.9 6.4 71 1-87 4-75 (79)
41 1sif_A Ubiquitin; hydrophobic 98.1 1.4E-05 4.8E-10 63.9 8.4 71 1-87 10-81 (88)
42 1uh6_A Ubiquitin-like 5; beta- 98.0 7.3E-06 2.5E-10 67.9 6.7 71 1-87 29-100 (100)
43 3plu_A Ubiquitin-like modifier 98.0 1.5E-05 5E-10 65.2 8.1 70 1-86 22-92 (93)
44 3vdz_A Ubiquitin-40S ribosomal 98.0 1.5E-05 5E-10 66.8 8.3 71 1-87 36-107 (111)
45 1wgg_A Ubiquitin carboxyl-term 98.0 1.8E-05 6.2E-10 64.6 8.6 72 1-89 8-80 (96)
46 1we6_A Splicing factor, putati 98.0 2E-05 6.9E-10 65.8 8.9 72 1-88 28-104 (111)
47 1ttn_A DC-UBP, dendritic cell- 98.0 1.5E-05 5.2E-10 66.0 7.6 72 1-88 24-96 (106)
48 3m63_B Ubiquitin domain-contai 98.0 9.7E-06 3.3E-10 66.9 6.4 69 1-85 29-97 (101)
49 1wx8_A Riken cDNA 4931431F19; 98.0 1E-05 3.5E-10 65.5 6.3 72 1-88 18-89 (96)
50 2dzm_A FAS-associated factor 1 98.0 1.4E-05 4.7E-10 66.2 6.9 74 1-89 10-83 (100)
51 1wia_A Hypothetical ubiquitin- 98.0 3.3E-05 1.1E-09 62.4 9.0 70 1-88 8-78 (95)
52 2kd0_A LRR repeats and ubiquit 97.9 2.8E-05 9.5E-10 61.9 8.1 70 2-87 14-83 (85)
53 2l7r_A Ubiquitin-like protein 97.9 1.9E-05 6.5E-10 63.9 7.1 70 1-87 20-89 (93)
54 1wyw_B Ubiquitin-like protein 97.9 1.6E-05 5.5E-10 64.8 6.7 71 1-87 22-93 (97)
55 4eew_A Large proline-rich prot 97.9 2.2E-05 7.5E-10 62.3 7.3 68 1-85 18-86 (88)
56 2kk8_A Uncharacterized protein 97.9 1.8E-05 6.1E-10 63.0 6.7 71 1-86 11-82 (84)
57 1v86_A DNA segment, CHR 7, way 97.9 1.5E-05 5.1E-10 64.9 6.2 69 1-86 18-86 (95)
58 1j8c_A Ubiquitin-like protein 97.9 2.8E-05 9.7E-10 66.6 8.3 73 1-89 33-105 (125)
59 1v5t_A 8430435I17RIK protein; 97.9 1.6E-05 5.3E-10 64.0 5.8 75 1-88 8-83 (90)
60 3b08_A Polyubiquitin-C, ubiqui 97.9 3.8E-05 1.3E-09 66.4 8.1 71 1-87 77-148 (152)
61 3l0w_B Monoubiquitinated proli 97.8 4.8E-05 1.6E-09 68.4 8.6 72 1-88 1-73 (169)
62 1wgd_A Homocysteine-responsive 97.8 5.3E-05 1.8E-09 61.0 7.8 72 1-88 8-86 (93)
63 2dzj_A Synaptic glycoprotein S 97.8 4.8E-05 1.6E-09 61.2 7.3 71 1-85 11-86 (88)
64 2kjr_A CG11242; UBL, ubiquitin 97.8 4.4E-05 1.5E-09 62.4 6.9 73 2-85 17-93 (95)
65 4dbg_A Ranbp-type and C3HC4-ty 97.8 4.8E-05 1.6E-09 63.5 6.9 70 2-87 26-99 (105)
66 1v6e_A Cytoskeleton-associated 97.8 9.2E-05 3.2E-09 60.0 8.4 74 2-85 9-85 (95)
67 1x1m_A Ubiquitin-like protein 97.7 8.9E-05 3E-09 61.5 7.7 73 1-88 13-100 (107)
68 4ajy_B Transcription elongatio 97.7 7.8E-05 2.7E-09 63.4 7.0 73 1-89 3-82 (118)
69 3u30_A Ubiquitin, linear DI-ub 97.7 8.7E-05 3E-09 66.3 7.7 71 1-87 21-92 (172)
70 3q3f_A Ribonuclease/ubiquitin 97.7 9E-05 3.1E-09 68.0 7.8 71 1-87 106-177 (189)
71 3rt3_B Ubiquitin-like protein 97.7 0.00012 4E-09 64.4 8.3 72 1-87 3-76 (159)
72 2fnj_B Transcription elongatio 97.7 6E-05 2.1E-09 64.2 6.1 72 1-88 3-81 (118)
73 2kdb_A Homocysteine-responsive 97.6 0.00012 4E-09 60.3 7.4 68 1-84 24-98 (99)
74 2kj6_A Tubulin folding cofacto 97.6 0.00011 3.9E-09 60.3 7.1 73 3-85 17-93 (97)
75 3u5e_m 60S ribosomal protein L 97.6 8.4E-06 2.9E-10 69.9 0.0 71 1-87 1-72 (128)
76 1v2y_A 3300001G02RIK protein; 97.6 4.3E-05 1.5E-09 63.8 4.2 72 1-87 8-95 (105)
77 1wm3_A Ubiquitin-like protein 97.6 0.00023 7.9E-09 54.8 7.8 69 1-85 2-71 (72)
78 3rt3_B Ubiquitin-like protein 97.6 0.0002 6.8E-09 62.9 8.4 71 1-87 82-153 (159)
79 1t0y_A Tubulin folding cofacto 97.6 0.0002 6.9E-09 60.9 7.9 76 2-86 8-85 (122)
80 3a4r_A Nfatc2-interacting prot 97.6 0.0002 6.9E-09 56.3 7.3 68 1-84 8-77 (79)
81 1wju_A NEDD8 ultimate buster-1 97.5 0.00019 6.6E-09 59.3 7.3 66 3-84 18-88 (100)
82 3u5c_f 40S ribosomal protein S 97.5 1.2E-05 4.3E-10 71.3 0.0 71 1-87 1-72 (152)
83 2kdi_A Ubiquitin, vacuolar pro 97.5 0.00026 8.8E-09 59.5 8.1 70 3-88 12-82 (114)
84 4a20_A Ubiquitin-like protein 97.5 0.00025 8.7E-09 58.2 7.3 70 1-86 20-94 (98)
85 1we7_A SF3A1 protein; structur 97.5 0.0002 6.8E-09 60.1 6.8 70 2-87 27-107 (115)
86 2io0_B Small ubiquitin-related 97.4 0.00049 1.7E-08 55.8 7.7 71 1-87 6-77 (91)
87 1wjn_A Tubulin-folding protein 97.4 0.00061 2.1E-08 55.3 8.2 76 3-86 12-91 (97)
88 2io1_B Small ubiquitin-related 97.4 0.00043 1.5E-08 56.3 7.2 71 1-87 8-79 (94)
89 4b6w_A Tubulin-specific chaper 97.4 0.0005 1.7E-08 55.0 7.4 63 13-85 18-81 (86)
90 3u30_A Ubiquitin, linear DI-ub 97.3 0.00045 1.6E-08 61.6 7.5 70 1-86 97-167 (172)
91 2lxa_A Ubiquitin-like protein 97.2 0.00063 2.2E-08 54.6 6.9 72 1-88 2-78 (87)
92 2d07_B Ubiquitin-like protein 97.2 0.00096 3.3E-08 54.1 8.0 71 1-87 18-89 (93)
93 3ai5_A Yeast enhanced green fl 97.2 0.00061 2.1E-08 66.9 8.0 70 1-86 234-304 (307)
94 3qx1_A FAS-associated factor 1 97.2 0.0016 5.4E-08 51.6 8.6 72 2-86 9-82 (84)
95 1wz0_A Ubiquitin-like protein 97.2 0.0013 4.5E-08 54.6 8.4 71 1-87 25-96 (104)
96 2daf_A FLJ35834 protein; hypot 96.9 0.0015 5.2E-08 55.4 6.4 69 3-87 18-88 (118)
97 2dzk_A UBX domain-containing p 96.9 0.0058 2E-07 50.9 9.7 77 2-90 15-93 (109)
98 2k8h_A Small ubiquitin protein 96.8 0.0023 7.8E-08 53.7 6.4 71 1-87 27-98 (110)
99 2eke_C Ubiquitin-like protein 96.6 0.0039 1.3E-07 51.9 6.8 70 1-87 32-102 (106)
100 1wgh_A Ubiquitin-like 3, HCG-1 96.6 0.0076 2.6E-07 51.0 8.3 71 1-87 17-98 (116)
101 1se9_A Ubiquitin family; ubiqu 96.6 0.0047 1.6E-07 53.0 7.1 71 1-87 17-102 (126)
102 2kks_A Uncharacterized protein 96.6 0.026 8.9E-07 49.0 11.9 118 134-271 6-124 (146)
103 3shq_A UBLCP1; phosphatase, hy 96.6 0.0033 1.1E-07 62.0 6.9 72 2-88 7-80 (320)
104 2cr5_A Reproduction 8; UBX dom 96.3 0.015 5E-07 48.4 8.3 75 2-90 25-101 (109)
105 1oqy_A HHR23A, UV excision rep 96.2 0.0077 2.7E-07 60.5 7.4 72 1-88 8-84 (368)
106 2gow_A HCG-1 protein, ubiquiti 96.2 0.01 3.5E-07 50.8 7.0 71 1-87 18-99 (125)
107 2kcq_A MOV34/MPN/PAD-1 family; 96.2 0.037 1.3E-06 48.4 10.8 105 151-272 20-127 (153)
108 1wj4_A KIAA0794 protein; UBX d 95.6 0.025 8.4E-07 48.2 6.9 73 2-87 45-119 (124)
109 2jxx_A Nfatc2-interacting prot 95.6 0.03 1E-06 45.8 7.0 67 2-84 27-95 (97)
110 3kyd_D Small ubiquitin-related 95.6 0.037 1.3E-06 46.7 7.7 69 2-86 42-111 (115)
111 2xzm_9 RPS31E; ribosome, trans 94.4 0.0069 2.4E-07 55.5 0.0 65 1-86 1-66 (189)
112 1s3s_G P47 protein; AAA ATPase 94.3 0.07 2.4E-06 45.5 6.1 66 2-81 54-122 (127)
113 2kc2_A Talin-1, F1; FERM, adhe 94.2 0.081 2.8E-06 45.4 6.3 85 2-87 13-122 (128)
114 2al3_A TUG long isoform; TUG U 93.7 0.15 5.2E-06 41.1 6.5 74 1-90 10-84 (90)
115 3goe_A DNA repair protein RAD6 93.1 0.44 1.5E-05 37.5 8.1 63 6-84 16-79 (82)
116 3pge_A SUMO-modified prolifera 91.9 0.33 1.1E-05 44.6 7.1 70 2-87 31-100 (200)
117 2l76_A Nfatc2-interacting prot 91.5 0.41 1.4E-05 38.9 6.3 68 2-85 23-90 (95)
118 2o95_A 26S proteasome non-ATPa 90.8 1 3.5E-05 40.2 9.1 131 127-273 7-144 (187)
119 3tix_A Ubiquitin-like protein 90.6 0.55 1.9E-05 43.1 6.9 70 2-87 59-128 (207)
120 3onh_A Ubiquitin-activating en 86.5 0.88 3E-05 38.8 5.1 59 20-87 19-79 (127)
121 3jyu_A Ubiquitin carboxyl-term 85.7 1.2 4.2E-05 41.4 6.3 66 12-89 154-222 (231)
122 4a3p_A Ubiquitin carboxyl-term 84.1 1.2 4.2E-05 40.9 5.4 65 12-88 142-209 (217)
123 1oey_A P67-PHOX, neutrophil cy 82.7 2.1 7.1E-05 33.9 5.4 45 1-47 6-51 (83)
124 1y8x_B Ubiquitin-activating en 80.3 1 3.4E-05 36.8 2.8 72 11-85 6-82 (98)
125 4efo_A Serine/threonine-protei 79.2 1.6 5.3E-05 35.4 3.6 32 11-43 25-56 (94)
126 4e0q_A COP9 signalosome comple 79.2 4.4 0.00015 34.8 6.7 105 151-269 32-137 (141)
127 1ef1_A Moesin; membrane, FERM 77.6 4.7 0.00016 38.1 7.1 69 1-81 2-72 (294)
128 3uf8_A Ubiquitin-like protein 75.6 6.8 0.00023 35.7 7.3 69 2-87 23-92 (209)
129 3u52_E Phenol hydroxylase comp 71.2 6.9 0.00024 32.9 5.6 59 13-87 41-109 (119)
130 1h4r_A Merlin; FERM, neurofibr 70.2 9.5 0.00032 36.4 7.3 68 1-80 23-91 (314)
131 2i1j_A Moesin; FERM, coiled-co 67.8 10 0.00035 39.9 7.4 72 1-84 5-78 (575)
132 1oi0_A AF2198, hypothetical pr 67.1 12 0.00042 30.8 6.5 66 151-235 23-88 (124)
133 3v7o_A Minor nucleoprotein VP3 65.2 1.3 4.5E-05 41.1 0.0 70 1-87 22-92 (227)
134 3ix6_A TS, tsase, thymidylate 63.5 1.5 5.1E-05 43.8 0.0 70 2-87 23-92 (360)
135 2bps_A YUKD protein; ubiquitin 60.6 15 0.00052 28.7 5.4 63 7-84 14-80 (81)
136 4da1_A Protein phosphatase 1K, 57.6 2.2 7.4E-05 42.5 0.0 70 2-87 32-101 (389)
137 3ivf_A Talin-1; FERM domain, c 56.6 28 0.00094 34.0 7.9 76 1-84 86-164 (371)
138 3ivf_A Talin-1; FERM domain, c 53.9 31 0.001 33.7 7.7 74 2-88 5-85 (371)
139 1vd2_A Protein kinase C, IOTA 51.9 32 0.0011 27.3 6.1 44 3-47 9-54 (89)
140 2daj_A KIAA0977 protein, COBL- 51.3 17 0.00058 28.9 4.2 56 14-85 25-80 (91)
141 1wgr_A Growth factor receptor- 49.8 29 0.00099 28.2 5.5 46 2-48 11-59 (100)
142 3w1s_C Ubiquitin-like protein 47.4 32 0.0011 27.3 5.4 61 12-89 25-87 (91)
143 2ylm_A Ubiquitin carboxyl-term 47.1 11 0.00036 39.4 3.2 67 10-86 147-216 (530)
144 4gdk_A Ubiquitin-like protein 43.3 55 0.0019 25.9 6.2 74 2-90 7-88 (91)
145 2c7h_A RBBP6, retinoblastoma-b 41.2 32 0.0011 27.2 4.4 45 3-47 11-57 (86)
146 1ryj_A Unknown; beta/alpha pro 40.4 88 0.003 22.9 6.7 61 1-86 5-65 (70)
147 2nvu_B Maltose binding protein 38.5 27 0.00091 37.8 4.8 72 11-85 713-789 (805)
148 1j0g_A Hypothetical protein 18 36.5 61 0.0021 25.4 5.2 61 12-87 26-86 (92)
149 1wz3_A Autophagy 12B, ATG12B, 33.5 49 0.0017 26.5 4.5 62 12-90 30-93 (96)
150 2eel_A Cell death activator CI 33.2 65 0.0022 25.7 5.1 45 3-49 12-56 (91)
151 2kvr_A Ubiquitin carboxyl-term 33.2 33 0.0011 28.9 3.6 30 13-43 59-88 (130)
152 3au4_A Myosin-X; protein-prote 32.6 49 0.0017 34.1 5.5 44 1-45 217-263 (555)
153 1tt5_B Ubiquitin-activating en 31.4 18 0.00062 36.6 1.9 71 12-85 343-418 (434)
154 2kmm_A Guanosine-3',5'-BIS(dip 29.0 59 0.002 23.5 4.0 31 1-33 1-31 (73)
155 1eo6_A GATE-16, golgi-associat 28.5 76 0.0026 26.2 4.9 63 12-90 47-113 (117)
156 3m95_A Autophagy related prote 28.4 82 0.0028 26.5 5.2 63 12-90 55-121 (125)
157 2r2q_A Gamma-aminobutyric acid 27.9 76 0.0026 25.8 4.8 60 12-87 46-109 (110)
158 3qij_A Protein 4.1; cytoskelet 26.0 78 0.0027 29.8 5.3 43 1-44 18-62 (296)
159 3h9d_A ATG8, microtubule-assoc 25.8 71 0.0024 26.6 4.3 63 12-90 50-116 (119)
160 3pvl_A Myosin VIIA isoform 1; 25.8 79 0.0027 33.7 5.7 44 1-45 264-309 (655)
161 2zjd_A Microtubule-associated 24.4 56 0.0019 27.6 3.5 63 12-90 55-122 (130)
162 2rh2_A Dihydrofolate reductase 21.6 30 0.001 24.7 1.0 14 207-220 25-38 (62)
163 3tca_A Amyloid beta A4 precurs 21.0 1.1E+02 0.0037 28.0 5.1 42 1-43 35-78 (291)
No 1
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.6e-18 Score=137.59 Aligned_cols=73 Identities=25% Similarity=0.439 Sum_probs=60.2
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceee--ccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLS--TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls--~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|+||||||+||+||+|+ |++|+++|+++|+++++++.+.++++ .+|+. ++. .+++.+|+++||+|
T Consensus 5 m~lRvrs~~G~~Ri~v~-~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~----------~l~--~~~~~~l~~lgl~h 71 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITAT-KRETAATFLKKVAKEFGFQNNGFSVYINRNKTG----------EIT--ASSSKSLHLLKIKH 71 (80)
T ss_dssp CCCEEECSSEEEECCCC-SSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGG----------GSS--SCCCCTTTTTCCCT
T ss_pred EEEEEECCCCCEEEEcC-CcChHHHHHHHHHHHcCCCCCcceEEecCCCCC----------ccc--CCCCCCHHHcCCCC
Confidence 89999999999999999 69999999999999999998887774 44421 011 24689999999999
Q ss_pred ccEEEEee
Q 015194 79 GSIVFLSY 86 (411)
Q Consensus 79 GDml~l~y 86 (411)
||||||..
T Consensus 72 Gd~l~l~~ 79 (80)
T 2pjh_A 72 GDLLFLFP 79 (80)
T ss_dssp TCCEEC--
T ss_pred CCEEEEec
Confidence 99999863
No 2
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=9.8e-15 Score=122.64 Aligned_cols=95 Identities=66% Similarity=1.073 Sum_probs=73.1
Q ss_pred CEEEEEcCCCceEEEec-CCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGLERVTVD-GAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~-~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|+|||||++|++||+|+ + ++|+.+|+++|.+++++|++.|.|+.+......+.|..+.++..+...+++|+++||+||
T Consensus 8 M~irvrs~~G~~~v~v~~~-~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGP-HITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEEEEEECCT-TSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCEEEEECCC-CCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 89999999999999999 6 999999999999999999999999665432111111100011112356899999999999
Q ss_pred cEEEEeecCccccCCCC
Q 015194 80 SIVFLSYDGERNVRGPS 96 (411)
Q Consensus 80 Dml~l~y~~~~~~~~~~ 96 (411)
|+|||.|...+..++|+
T Consensus 87 ~~L~l~~~~~~~~~~~~ 103 (107)
T 1wf9_A 87 SMVYLAYEGERTIRGSG 103 (107)
T ss_dssp CEEECCCSSCCCCCCCC
T ss_pred CEEEEEeCCCCcccCCC
Confidence 99999999887766653
No 3
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.13 E-value=1e-10 Score=93.97 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=63.7
Q ss_pred CEEEEEcCCCceEEE-ecCCCCcHHHHHHHHHhhcCCCCCCcee-eccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDGLERVT-VDGAHVTVAELKTIIQSQLRIPVESQTL-STNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G~~Rv~-v~~p~~t~~~L~~kI~~~l~~~~~~~~L-s~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|.||||+++|.++|+ ++ +++|+++|+++|.++.+++++.+.| +..|.+ ++ ++.+.+++|+++||+|
T Consensus 1 m~i~vr~~~G~~~v~~l~-~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k----------~l-~l~~~~~tL~~~gl~~ 68 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLS-SRTRLRELQGQIAAITGIAPGSQRILVGYPPE----------CL-DLSDRDITLGDLPIQS 68 (86)
T ss_dssp CCEEEEETTEEEEECSCC-TTCBHHHHHHHHHHHTCCCTTTCCCEESSCCC----------CC-CCCCSSCBTTTSSCCT
T ss_pred CEEEEEcCCCCEEeeecC-CCCCHHHHHHHHHHHhCCCccceEEEeCCCCc----------cc-ccCCCCCCHHHcCCCC
Confidence 889999999999999 99 6999999999999999999998888 444422 01 1123578999999999
Q ss_pred ccEEEEeecCc
Q 015194 79 GSIVFLSYDGE 89 (411)
Q Consensus 79 GDml~l~y~~~ 89 (411)
|++|++..+..
T Consensus 69 g~~l~v~~~~~ 79 (86)
T 2kzr_A 69 GDMLIVEEDQT 79 (86)
T ss_dssp TCEEECCCCSC
T ss_pred CCEEEEEeCCC
Confidence 99999987754
No 4
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.90 E-value=7.8e-08 Score=89.90 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=105.8
Q ss_pred CcceEEEechhhhhHHHHHHHHhhccceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHhcC
Q 015194 126 HCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLG 205 (411)
Q Consensus 126 ~~d~vsf~~~~~~~fq~~~~~~l~~~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~lG 205 (411)
-+..+.+..+..+.|...-+..-.-..+-||+|||+... ....|..++.|||.++.+.+.+..+. + .-+....-|
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~-~~~~I~~v~~ppq~gt~~~v~~~~~~---e-~~~~~~~~~ 114 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR-NEFTITHVLIPKQSAGSDYCNTENEE---E-LFLIQDQQG 114 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET-TEEEEEEEEECCEEECSSCEEECCHH---H-HHHHHHHHT
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC-CCEEEEEEEeCCccCCCCceeccChH---H-HHHHHhhCC
Confidence 345677777777766655443111136889999999874 45678999999999999999875321 1 222334579
Q ss_pred CeEEEEEEeecccCCCCceeecHHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhh---cCc
Q 015194 206 MKKVGFIFTQTIMQNKKDYTLSNREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFK---EGW 282 (411)
Q Consensus 206 L~~VG~IfTdl~~~~~~~~fLSs~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~---~~~ 282 (411)
|+.|||+=||+ ...-+||+.++.+.+++|...+ +||..|++.. ...+.||-.+..+++.++ +.=
T Consensus 115 l~~vGWyHSHP----~~~~~pS~~Dl~tq~~~q~~~~--~~I~IVvsP~-------~~~lgaFrLtp~G~~~~~~c~~~~ 181 (211)
T 3rzv_A 115 LITLGWIHTHP----TQTAFLSSVDLHTHCSYQMMLP--ESVAIVCSPK-------FQETGFFKLTDHGLEEISSCRQKG 181 (211)
T ss_dssp CEEEEEEEECT----TSCSCCCHHHHHHHHHHHHHCT--TCEEEEEETT-------TTEEEEEEECHHHHHHHHHCCCCS
T ss_pred CEEEEEEeCCC----CCCCCCCHHHHHHHHHHHhcCC--CeEEEEEcCC-------CCeeeEEEeccchhhhhhccccCC
Confidence 99999999999 7789999999999999999875 7888888842 236899999999998444 333
Q ss_pred ccc
Q 015194 283 FET 285 (411)
Q Consensus 283 i~~ 285 (411)
+.|
T Consensus 182 fhp 184 (211)
T 3rzv_A 182 FHP 184 (211)
T ss_dssp SCC
T ss_pred ccc
Confidence 666
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.85 E-value=1.2e-07 Score=86.49 Aligned_cols=140 Identities=13% Similarity=0.188 Sum_probs=104.4
Q ss_pred ceEEEechhhhhHHHHHHHHhhccceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHhcCCe
Q 015194 128 ESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMK 207 (411)
Q Consensus 128 d~vsf~~~~~~~fq~~~~~~l~~~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~lGL~ 207 (411)
..|.+.....+.|...-+..-.-..+=||+|||+...+ ...|..++.|||.++.+.+.+.. +. ..-+.+..-||+
T Consensus 9 ~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~-~~~V~~v~~~pq~~t~~~~~~~~-~~---e~~~~~~~~~l~ 83 (178)
T 2znr_A 9 RCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN-EFTITHVIVPKQSAGPDYCDMEN-VE---ELFNVQDQHDLL 83 (178)
T ss_dssp CCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT-EEEEEEEEECCEEEETTEEEECC-HH---HHHHHHHHHTCE
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC-CeEEEEEEeCCcCCCCCeeccCC-HH---HHHHHHHhCCCE
Confidence 34566666666555544431011268999999998755 56788999999999999887653 21 234457778999
Q ss_pred EEEEEEeecccCCCCceeecHHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhhc---Cccc
Q 015194 208 KVGFIFTQTIMQNKKDYTLSNREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFKE---GWFE 284 (411)
Q Consensus 208 ~VG~IfTdl~~~~~~~~fLSs~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~~---~~i~ 284 (411)
.|||+=||+ ...-++|+.++.+++.+|+..| +++..|++..- +. +.||..++.++++++. +=+.
T Consensus 84 ~vGwyHSHP----~~~~~pS~~Dv~tq~~yq~~~~--~~v~iIvsp~~-----~~--~~afrl~~~g~~~~~~~~~~~f~ 150 (178)
T 2znr_A 84 TLGWIHTHP----TQTAFLSSVDLHTHCSYQLMLP--EAIAIVCSPKH-----KD--TGIFRLTNAGMLEVSACKKKGFH 150 (178)
T ss_dssp EEEEEEECS----SSCSCCCHHHHHHHHHHHHHCT--TCEEEEEEGGG-----TE--EEEEEECHHHHHHHHHCCCCSSC
T ss_pred EEEEEeCCC----CCCCCCCHHHHHHHHHHHhhcC--CEEEEEEcCCC-----Cc--ceEEEEECCcEeeecccCCCCcc
Confidence 999999999 6678999999999999999765 78888888532 22 7999999999999554 3355
Q ss_pred c
Q 015194 285 T 285 (411)
Q Consensus 285 ~ 285 (411)
|
T Consensus 151 p 151 (178)
T 2znr_A 151 P 151 (178)
T ss_dssp C
T ss_pred c
Confidence 5
No 6
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.82 E-value=3.3e-08 Score=95.13 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=87.6
Q ss_pred cceeeeeeeeeeecC-CcE-EEEeEeCCCCCCCcCceEEcC-CchhHHHHHHHHHhcCCeEEEEEEeecccCCCCceeec
Q 015194 151 AVKRGGFMYGTVLED-KRV-EVNFIYEPPQQGTEEVLYILR-DEEEEKLVDAIAAGLGMKKVGFIFTQTIMQNKKDYTLS 227 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~-~~a-~VeAIYEPPQ~~~~dg~~l~~-d~~~e~~vd~iA~~lGL~~VG~IfTdl~~~~~~~~fLS 227 (411)
..|=||||||+-.++ ..| .|.+|=-|||.|+.+++++.. .+..+ - .-+|+.+|||-|++ .+..|||
T Consensus 58 rTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~-~------l~dLe~LGWIHTqp----~e~~~LS 126 (273)
T 2p8r_A 58 RTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHE-L------LRDFEPLGWMHTQP----NELPQLS 126 (273)
T ss_dssp SSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCT-T------TTTSEEEEEEEEES----SCCSSCC
T ss_pred cceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchh-h------hccccccceEeeCC----CCCCCcC
Confidence 689999999997654 345 589999999999999999843 22222 1 28999999999999 7789999
Q ss_pred HHHHHHHHHHHHhcCC--C-ceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhh
Q 015194 228 NREVLQAVEFHAECNM--E-EWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFK 279 (411)
Q Consensus 228 s~Eii~aa~~Q~~~~~--s-kfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~ 279 (411)
+.++.+-|++|..++. . +-|.+|++. . .|.+.+.||-+++.+++--+
T Consensus 127 s~Dl~tH~~~~~~~~~~~~~e~I~Ivcsf--t---pgs~sl~af~LT~~G~~Wg~ 176 (273)
T 2p8r_A 127 PQDVTTHAKLLTDNISWDGEKTVMITCSF--T---PGSVSLTAYKLTPSGYEWGK 176 (273)
T ss_dssp HHHHHHHHHHHHHCTTCCTTTCEEEEEEE--E---TTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCceEEEEEec--C---CCCceeEEEEcChHHhhhhh
Confidence 9999999999998642 2 544433332 2 27889999999999987333
No 7
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.8e-08 Score=93.74 Aligned_cols=116 Identities=19% Similarity=0.308 Sum_probs=90.0
Q ss_pred cceeeeeeeeeeecC-CcE-EEEeEeCCCCCCCcCceEEcCCc-hhHHHHHHHHHhcCCeEEEEEEeecccCCCCceeec
Q 015194 151 AVKRGGFMYGTVLED-KRV-EVNFIYEPPQQGTEEVLYILRDE-EEEKLVDAIAAGLGMKKVGFIFTQTIMQNKKDYTLS 227 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~-~~a-~VeAIYEPPQ~~~~dg~~l~~d~-~~e~~vd~iA~~lGL~~VG~IfTdl~~~~~~~~fLS 227 (411)
..|-||||||.-.++ ..| .|.+|=-|||.|+.|.+++.... ..+ .-..-||+.+|||-|++ .+.-|||
T Consensus 57 ~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~-----~~~l~dLe~LGWIHTqp----tq~~fLS 127 (254)
T 2og4_A 57 KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGD-----LPDTEGLELLGWIHTQT----EELKFMA 127 (254)
T ss_dssp SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTT-----STTCTTCEEEEEEEEES----SCCSSCC
T ss_pred cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcccc-----chhhcCCEecceEeeCC----CCCcccC
Confidence 689999999997554 355 59999999999999999985322 221 11137999999999999 7789999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhhcC
Q 015194 228 NREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFKEG 281 (411)
Q Consensus 228 s~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~~~ 281 (411)
+.++.+-|++|.... ++.|.+|++.+ .|.+.+.||-+++.+++--+.+
T Consensus 128 s~Dl~tH~~~~~~~~-~eaIaIvcsft-----pgs~sl~af~LT~~G~~Wg~~n 175 (254)
T 2og4_A 128 ASEVATHSKLFADKK-RDCIDISIFST-----PGSVSLSAYNLTDEGYQWGEEN 175 (254)
T ss_dssp HHHHHHHHHHHTTTC-TTCEEEEEEEE-----TTEEEEEEEEECHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC-CCeEEEEEecC-----CCCceeEEEEcChhhhhhhhhc
Confidence 999999999999762 25554444432 2788899999999999855544
No 8
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.2e-07 Score=97.45 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=92.0
Q ss_pred cceeeeeeeeeeecCC-c-EEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHhcCCeEEEEEEeecccCCCCceeecH
Q 015194 151 AVKRGGFMYGTVLEDK-R-VEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFIFTQTIMQNKKDYTLSN 228 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~~-~-a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~lGL~~VG~IfTdl~~~~~~~~fLSs 228 (411)
..|=||||||+-.++. . -.|.+|--|||.|+.+++++..-++++ .-+ -.=+|+.+|||-|++ .+..|||+
T Consensus 368 rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he-~~~---~l~dLe~LGWIHTqp----~et~fLSs 439 (565)
T 3sbg_A 368 KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIG-DLP---DTEGLELLGWIHTQT----EELKFMAA 439 (565)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCT-TST---TCTTCEEEEEEEEES----SCCSSCCH
T ss_pred cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCccc-ccc---ccccCEecceeeecC----CcccccCH
Confidence 6789999999977663 3 489999999999999999986222221 000 035799999999999 77899999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhhcC
Q 015194 229 REVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFKEG 281 (411)
Q Consensus 229 ~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~~~ 281 (411)
.++.+-|++=..++ ++.++.+++ ..+ |.|.+.||-++..+.+--+.+
T Consensus 440 ~Dl~THakl~~~n~-~~~I~itvs--ftP---GS~SLsAy~LT~eGyeWG~~N 486 (565)
T 3sbg_A 440 SEVATHSKLFADKK-RDCIDISIF--STP---GSVSLSAYNLTDEGYQWGEEN 486 (565)
T ss_dssp HHHHHHHHHHSSSC-TTCEEEEEE--EET---TEEEEEEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEE--ecC---CceEEEEEecCHhHHHHHhhc
Confidence 99999999998887 465444443 332 899999999999999888874
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.50 E-value=4.9e-07 Score=69.30 Aligned_cols=71 Identities=21% Similarity=0.393 Sum_probs=60.0
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+|. +.++++ +++|+++|+++|.+..++|++.+.|.... ..+ .++.+|+++|+++|
T Consensus 1 M~i~vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~~i~~~~q~L~~~g--------------~~L-~d~~tL~~~~i~~g 64 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSG--------------KQM-NDEKTAADYKILGG 64 (76)
T ss_dssp CEEEEECTTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBGGGGTCCTT
T ss_pred CEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHHCcChHHEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 88999999885 789999 69999999999999999999998885432 112 34689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|++...
T Consensus 65 ~~i~l~~~ 72 (76)
T 1ndd_A 65 SVLHLVLA 72 (76)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999754
No 10
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.46 E-value=6e-07 Score=68.78 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=59.9
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+|. +.++++ +++|+++|+++|.+..++|++.+.|.... ..+ ..+.+|+++|+++|
T Consensus 1 M~i~vk~~~g~~~~i~v~-~~~tv~~lK~~i~~~~~i~~~~q~L~~~g--------------~~L-~d~~tL~~~~i~~g 64 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQRE 64 (76)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTCBTGGGTCCTT
T ss_pred CEEEEEcCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECC--------------eEC-CCCCcHHHcCCCCC
Confidence 88999999885 789999 69999999999999999999998885432 112 34689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|++...
T Consensus 65 ~~i~l~~~ 72 (76)
T 3a9j_A 65 STLHLVLR 72 (76)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999754
No 11
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.38 E-value=1.1e-06 Score=71.54 Aligned_cols=72 Identities=25% Similarity=0.315 Sum_probs=61.0
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+|. +.++|+ +++|+++|+++|.+..++|++.+.|..+. ..| .++.+|+++|+++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~gi~~~~qrL~~~G--------------k~L-~D~~tL~~~gi~~g 64 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 64 (98)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHTCCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCCCCHHHcCCCCC
Confidence 88999999885 789999 69999999999999999999999885432 122 34789999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 65 ~~i~l~~~~ 73 (98)
T 1yx5_B 65 STLHLVLRL 73 (98)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEeC
Confidence 999988654
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.36 E-value=1.3e-06 Score=68.00 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=59.2
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.||+.+| ++.++|+ |++|+++|+++|.+..++|++.|.|...- ..+ ..+.+|+++||++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~G--------------~~L-~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEG--------------KPL-EDQLPLGEYGLKPL 68 (79)
T ss_dssp EEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBGGGGTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CcChHHHHHHHHHhhcCCCHHHEEEEECC--------------EEC-CCCCcHHHCCCCCC
Confidence 6799999887 5679999 69999999999999999999999885421 122 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|++...
T Consensus 69 ~~l~l~~r 76 (79)
T 3phx_B 69 STVFMNLR 76 (79)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99998753
No 13
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.34 E-value=1.3e-06 Score=67.25 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=58.0
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++...++.++++ +++|+++|+++|.+..++|++.+.|.... ..+ ..+.+|+++|+++|+
T Consensus 5 m~i~vk~~g~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~qrL~~~g--------------k~L-~d~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVA-PESTVLQFKEAINKANGIPVANQRLIYSG--------------KIL-KDDQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEEETTEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTTC
T ss_pred EEEEEEECCEEEEEEEC-CCCcHHHHHHHHHHHhCCCHHHEEEEECC--------------eEc-CCCCCHHHcCCCCCC
Confidence 56899994447889999 69999999999999999999999885422 112 346899999999999
Q ss_pred EEEEeec
Q 015194 81 IVFLSYD 87 (411)
Q Consensus 81 ml~l~y~ 87 (411)
.|++...
T Consensus 69 ~i~l~~~ 75 (77)
T 2bwf_A 69 SVHLVKS 75 (77)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9998643
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.34 E-value=1.5e-06 Score=67.51 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=59.4
Q ss_pred CEEEEEcCCCce--EEE-ecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccc
Q 015194 1 MLLRIRSRDGLE--RVT-VDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNIS 77 (411)
Q Consensus 1 MilRvRS~~G~~--Rv~-v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk 77 (411)
|-|+||+.+|.. .++ |+ |++|+.+|+++|.+..++|++.+.|...- ..+ ..+.+|+++|++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~-~~~tv~~lK~~i~~~~gip~~~qrL~~~g--------------~~L-~d~~tL~~~~i~ 66 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLS-RLTKVEELRRKIQELFHVEPGLQRLFYRG--------------KQM-EDGHTLFDYEVR 66 (78)
T ss_dssp EEEEEEETTSSCEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTCBTTTTTCC
T ss_pred EEEEEEECCCCEEEEEeccC-CCCCHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCCCCHHHcCCC
Confidence 779999999864 799 99 69999999999999999999999985421 112 346899999999
Q ss_pred cccEEEEeec
Q 015194 78 HGSIVFLSYD 87 (411)
Q Consensus 78 HGDml~l~y~ 87 (411)
+|+.|++...
T Consensus 67 ~g~~i~l~~r 76 (78)
T 2faz_A 67 LNDTIQLLVR 76 (78)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9999998754
No 15
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.33 E-value=1.3e-06 Score=69.70 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=60.7
Q ss_pred CEEEEEcCCC--ceEEE-ecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccc
Q 015194 1 MLLRIRSRDG--LERVT-VDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNIS 77 (411)
Q Consensus 1 MilRvRS~~G--~~Rv~-v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk 77 (411)
|-|+||+..| ++.|+ |+ |++|+.+|+++|.+..++|++.+.|.... ..| ..+.+|+++|++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~g--------------k~L-~d~~tL~~~~i~ 71 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVS-RKATIEELRERVWALFDVRPECQRLFYRG--------------KQL-ENGYTLFDYDVG 71 (89)
T ss_dssp EEEEEEETTCSCEEEEEEEC-TTCBHHHHHHHHHHHSCCCTTTEEEEETT--------------EEC-CSSSBHHHHTCC
T ss_pred EEEEEEECCCCceEEEEecC-CCCCHHHHHHHHHHHHCcChhhEEEEECC--------------eEC-CCCCCHHHCCCC
Confidence 6799999998 68994 99 69999999999999999999999985432 112 346899999999
Q ss_pred cccEEEEeecC
Q 015194 78 HGSIVFLSYDG 88 (411)
Q Consensus 78 HGDml~l~y~~ 88 (411)
+|+.|+|....
T Consensus 72 ~g~~i~l~~~~ 82 (89)
T 1wy8_A 72 LNDIIQLLVRP 82 (89)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEeC
Confidence 99999998664
No 16
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.33 E-value=1.6e-06 Score=71.57 Aligned_cols=73 Identities=14% Similarity=0.265 Sum_probs=59.5
Q ss_pred CEEEEEcCCC-----ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc
Q 015194 1 MLLRIRSRDG-----LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN 75 (411)
Q Consensus 1 MilRvRS~~G-----~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG 75 (411)
|-|+|+++.| ++.|+|+ +++|+.+|+++|++..+++++.|.|...- ..|.+..++|+++|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~g--------------k~L~D~~~tL~~yg 72 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVN-PDFELSNFRVLCELESGVPAEEAQIVYME--------------QLLTDDHCSLGSYG 72 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEEC-TTCBHHHHHHHHHHHTCCCGGGBCEEETT--------------EEECCSSSBHHHHT
T ss_pred EEEEEEECCCCcCceEEEEEcC-CCCCHHHHHHHHHHHHCcChHHeEEEECC--------------EECCCCcccHHHCC
Confidence 6789999865 6779999 69999999999999999999999985421 11223447899999
Q ss_pred cccccEEEEeecC
Q 015194 76 ISHGSIVFLSYDG 88 (411)
Q Consensus 76 LkHGDml~l~y~~ 88 (411)
|++|+.|+|....
T Consensus 73 I~~g~~l~l~~~~ 85 (102)
T 1v5o_A 73 LKDGDMVVLLQKD 85 (102)
T ss_dssp CCTTEEEEECBCC
T ss_pred CCCCCEEEEEECC
Confidence 9999999997654
No 17
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.4e-06 Score=67.80 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=58.3
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+|. +.++++ +++|+++|+++|.+..++|++.+.|.... ..+ ..+.+|+++|+++|
T Consensus 8 m~i~vk~~~g~~~~~~v~-~~~tV~~LK~~i~~~~~i~~~~qrL~~~g--------------k~L-~d~~tL~~~~i~~g 71 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVP-EDELVSTLKQLVSEKLNVPVRQQRLLFKG--------------KAL-ADGKRLSDYSIGPN 71 (81)
T ss_dssp EEEEEEETTSCEEEEEEC-SSCBHHHHHHHHHHHTCCCTTTCEEEETT--------------EEC-CTTSBGGGGTCCSS
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHEEEEECC--------------eEC-CCCCcHHHcCCCCC
Confidence 67899998875 679999 69999999999999999999999985432 112 34689999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|++..
T Consensus 72 ~~i~l~~ 78 (81)
T 2dzi_A 72 SKLNLVV 78 (81)
T ss_dssp BCCEEEC
T ss_pred CEEEEEE
Confidence 9999864
No 18
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.32 E-value=2.3e-06 Score=70.97 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=62.5
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+||+..|.+.|+|+ +++|+.+|+++|.+..+++++.+.|...- ..| ..+.+|+++||++|+
T Consensus 18 m~I~Vk~~~g~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~gi~~g~ 81 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVT-DTCTIQQLKEEISQRFKAHPDQLVLIFAG--------------KIL-KDPDSLAQCGVRDGL 81 (106)
T ss_dssp EEEEEECSSCEEEEEEE-TTCCHHHHHHHHHHHHTCCTTTEEEEETT--------------EEC-CTTSCHHHHTCCTTE
T ss_pred EEEEEEeCCCcEEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCcCcHHHcCCCCCC
Confidence 67999999999999999 69999999999999999999999985431 112 346899999999999
Q ss_pred EEEEeecCcc
Q 015194 81 IVFLSYDGER 90 (411)
Q Consensus 81 ml~l~y~~~~ 90 (411)
.|+|......
T Consensus 82 ~i~l~~~~~~ 91 (106)
T 1wx7_A 82 TVHLVIKRQH 91 (106)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999876543
No 19
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.30 E-value=2.1e-06 Score=67.34 Aligned_cols=72 Identities=26% Similarity=0.332 Sum_probs=60.2
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.|+++ |++|+.+|+++|.+..++|++.+.|..+. ..| ..+.+|+++||++|
T Consensus 4 m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~qrL~~~g--------------~~L-~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKW 67 (85)
T ss_dssp EEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred EEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChHHEEEEECC--------------EEC-CCCCCHHHcCCCCC
Confidence 6799999886 6789999 69999999999999999999999885432 112 34689999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 68 ~~l~l~~r~ 76 (85)
T 3mtn_B 68 STLFLLLRL 76 (85)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEEEC
Confidence 999998653
No 20
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=1.8e-06 Score=71.20 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++..|.+.++|+ +++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++|+++|+
T Consensus 23 m~I~Vk~~~g~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~ygI~~gs 86 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVT-DTCTIQQLKEEISQRFKAHPDQLVLIFAG--------------KIL-KDPDSLAQCGVRDGL 86 (100)
T ss_dssp EEEEEECSSCEEEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBHHHHTCCTTC
T ss_pred EEEEEEcCCCcEEEEEC-CCCcHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCcCcHHHCCCCCCC
Confidence 67899999999999999 69999999999999999999999885421 112 346899999999999
Q ss_pred EEEEeecCc
Q 015194 81 IVFLSYDGE 89 (411)
Q Consensus 81 ml~l~y~~~ 89 (411)
.|+|.....
T Consensus 87 tI~l~~r~~ 95 (100)
T 1yqb_A 87 TVHLVIKRQ 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999976543
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=2.2e-06 Score=67.28 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=60.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.++|+ |++|+.+|+++|.+..++|++.+.|..+- ..+ ..+.+|+++||++|
T Consensus 4 m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~ip~~~qrL~~~g--------------~~L-~d~~tL~~~~i~~~ 67 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIHNH 67 (85)
T ss_dssp CEEEEECGGGCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETB--------------EEC-CTTCBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCCHHHEEEEECC--------------eEC-CCCCCHHHCCCCCC
Confidence 7899999886 5789999 69999999999999999999999885432 112 34679999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|++...-
T Consensus 68 ~~i~l~~rl 76 (85)
T 3n3k_B 68 SALYLLLKL 76 (85)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEec
Confidence 999997653
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.27 E-value=1.8e-06 Score=69.06 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=59.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+..| ++.++|+ |++|+++|+++|.+..++|++.|.|...- ..| ..+.+|+++||++|
T Consensus 5 m~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G--------------k~L-~D~~tL~~~~I~~g 68 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEG--------------KPL-EDQLPLGEYGLKPL 68 (88)
T ss_dssp EEEEEEETTSCEEEEEEE-SSSBHHHHHHHHHHHTCSCTTTEEEESSS--------------SCC-CTTSBHHHHHCSTT
T ss_pred EEEEEECCCCCEEEEEEC-CCCcHHHHHHHHHHHhCCChhHEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 6789999877 5578999 69999999999999999999999986431 112 34789999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 69 ~~i~l~~~~ 77 (88)
T 2hj8_A 69 STVFMNLRL 77 (88)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEEEc
Confidence 999997654
No 23
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.27 E-value=1.6e-06 Score=70.72 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=60.7
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCC-CCccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPD-RPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~-~tl~~lGLkHG 79 (411)
|-|.||+..|++.|+|+ |++|+++|+++|.+..++|++.|.|...- ..| ..+ .+|+++||+.|
T Consensus 16 ~~I~Vk~~~~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~~tL~~ygI~~g 79 (94)
T 2kan_A 16 IHVTVKFPSKQFTVEVD-RTETVSSLKDKIHIVENTPIKRMQLYYSG--------------IEL-ADDYRNLNEYGITEF 79 (94)
T ss_dssp EEEEEECSSCEEEEEEC-TTCBHHHHHHHHHHHSSSCTTTEEEEETT--------------EEE-CCTTSBHHHHTCCTT
T ss_pred EEEEEEcCCcEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHEEEEECC--------------EEC-CCCcccHHHCCCCCC
Confidence 56899999999999999 69999999999999999999999995421 122 235 89999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 80 stl~lv~r~ 88 (94)
T 2kan_A 80 SEIVVFLKS 88 (94)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEEeC
Confidence 999997543
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.26 E-value=2.5e-06 Score=68.51 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=58.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.|+|+ +++|+++|+++|.+..+++++.|.|...- ..+ ..+.+|+++||++|
T Consensus 18 m~i~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G--------------k~L-~D~~tL~~~gi~~g 81 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTCBTGGGTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHhhhCCChhhEEEEECC--------------eEC-CCcCcHHHCCCCCC
Confidence 6799998886 6789999 69999999999999999999999885421 112 34689999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|..
T Consensus 82 ~~i~l~~ 88 (91)
T 3v6c_B 82 STLHLVL 88 (91)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999863
No 25
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.4e-06 Score=80.57 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=96.1
Q ss_pred ceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHhcC--CeEEEEEEeecccCCCCceeecHH
Q 015194 152 VKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLG--MKKVGFIFTQTIMQNKKDYTLSNR 229 (411)
Q Consensus 152 ~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~lG--L~~VG~IfTdl~~~~~~~~fLSs~ 229 (411)
.-=+|.|.|++.++..+.|...|..|+.++.+.+.-.+ .......-+..+..| +..|||.-||+ .-..|+|+.
T Consensus 47 ~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d-~~y~~~m~~~~~~v~~~~~vVGWYhShP----~~~~~~S~~ 121 (306)
T 4b4t_V 47 MEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD-DVFQAKMMDMLKQTGRDQMVVGWYHSHP----GFGCWLSSV 121 (306)
T ss_dssp SCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC-HHHHHHHHHHHHHHSCCCCCSEEEEECC----SSSCCCCHH
T ss_pred ceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC-HHHHHHHHHHHHHhCCCcceeeEEecCC----CCCCcCCHH
Confidence 45699999999888789999999999999988887543 223334555566655 88999999998 556899999
Q ss_pred HHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHHHHHHhhcC
Q 015194 230 EVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDMCVRLFKEG 281 (411)
Q Consensus 230 Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q~~aLv~~~ 281 (411)
.|-.-+.+|...+ .||-+|+.+.-+ .+|.+.+-||+.+++.+.....+
T Consensus 122 Di~tq~~yQ~~~~--~~V~lV~Dp~~t--~~G~~~i~Afr~~~~~~~~~~~~ 169 (306)
T 4b4t_V 122 DVNTQKSFEQLNS--RAVAVVVDPIQS--VKGKVVIDAFRLIDTGALINNLE 169 (306)
T ss_dssp HHHHHHHHHHHCS--SCEEEEECSSSS--SSCSSCEEEEECCHHHHHHCCCC
T ss_pred HHHHHHHHHhcCC--CcEEEEECCCcC--CCCceeeeEEEecCccccccccC
Confidence 9999999998764 789999986433 35899999999999998765543
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.23 E-value=2.8e-06 Score=67.27 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=59.9
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.++|+ +++|+.+|+++|.+..++|++.+.|..+- ..| ..+.+|+++|+++|
T Consensus 8 m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~qrL~~~G--------------k~L-~d~~tL~~~~i~~g 71 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAIN-PNSFILGLKQQIEDQQGLPKKQQQLEFQG--------------QVL-QDWLGLGIYGIQDS 71 (87)
T ss_dssp EEEEEEETTTEEEEEEEC-SSSBHHHHHHHHHHHTCCCTTTEEEEETT--------------EEC-CSSSBHHHHTCCTT
T ss_pred EEEEEEcCCCCEEEEEeC-CCChHHHHHHHHHHHhCCChHHEEEEECC--------------EEc-cCCCCHHHCCCCCC
Confidence 6799999887 5689999 69999999999999999999999985432 112 34689999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 72 ~~i~l~~~~ 80 (87)
T 1wh3_A 72 DTLILSKKK 80 (87)
T ss_dssp EEEEEEECS
T ss_pred CEEEEEEec
Confidence 999997653
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=3.6e-06 Score=68.78 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=59.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+| ++.|+|+ +++|+.+|+++|.+..++|++.|.|..+- ..| ..+.+|+++||++|
T Consensus 23 m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~~i~~g 86 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 86 (98)
T ss_dssp CEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTCBSGGGTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHhCCChhHEEEEECC--------------EEC-CCCCcHHHCCCCCC
Confidence 7899998887 6799999 69999999999999999999999885432 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 87 ~~i~l~~r 94 (98)
T 4hcn_B 87 STLHLVLR 94 (98)
T ss_dssp EEEEEECB
T ss_pred CEEEEEEe
Confidence 99998643
No 28
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.19 E-value=4.8e-06 Score=66.68 Aligned_cols=72 Identities=21% Similarity=0.364 Sum_probs=59.9
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.|+|+ |++|+.+|+++|.+..++|++.|.|..+- ..| ..+.+|+++|+++|
T Consensus 1 M~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~~i~~g 64 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSG--------------KQM-NDEKTAADYKILGG 64 (88)
T ss_dssp CEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTSBTTTTTCCTT
T ss_pred CEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChhHEEEEECC--------------eEC-CCCCcHHHcCCCCC
Confidence 8899998776 5689999 69999999999999999999999885421 122 34789999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|...-
T Consensus 65 ~~l~l~~rl 73 (88)
T 4fbj_B 65 SVLHLVLAL 73 (88)
T ss_dssp CEEEEECBC
T ss_pred CEEEEEEEC
Confidence 999997654
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.17 E-value=6.3e-06 Score=66.52 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=60.3
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.|+|+ +++|+.+|+++|.+..++|++.+.|..+- ..| ..+.+|+++||++|
T Consensus 2 m~i~vk~~~g~~~~~~v~-~~~TV~~LK~~i~~~~gip~~~qrL~~~G--------------~~L-~d~~tL~~~~i~~~ 65 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 65 (96)
T ss_dssp CEEEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred cEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHhhhCCChhHEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 7899999886 5789999 69999999999999999999999885432 112 34689999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 66 ~~i~l~~r~ 74 (96)
T 3k9o_B 66 STLHLVLRL 74 (96)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEEc
Confidence 999998754
No 30
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.16 E-value=6.6e-06 Score=68.81 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=59.3
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+|. +.++|+ +++|+++|+++|.+..+++++.+.|..+. ..| ..+.+|+++|+++|
T Consensus 36 m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~gI~~g 99 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 99 (111)
T ss_dssp EEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCTTTEEEEETT--------------EEC-CSSCBTTTTTCCTT
T ss_pred EEEEEEcCCCCEEEEEeC-CCCCHHHHHHHHHHHHCcCcccEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 67999998874 679999 69999999999999999999999985432 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 100 s~I~l~~r 107 (111)
T 2ojr_A 100 STLHLVLR 107 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999754
No 31
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.15 E-value=6.2e-06 Score=66.33 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=59.6
Q ss_pred CEEEEEcCCCceEEEecCCC-----CcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAH-----VTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN 75 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~-----~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG 75 (411)
|-|+|++..+.+.|+++ ++ +|+.+|+++|.+..++|++.|.|.... ..|.+.+.+|+++|
T Consensus 8 ~~v~Vk~~~~~~~i~v~-~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~G--------------k~L~D~~~~L~~~~ 72 (92)
T 1wxv_A 8 LTVTVTHSNEKHDLHVT-SQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKG--------------KSLKEMETPLSALG 72 (92)
T ss_dssp EEEEEECSSSEEEEEEC-CCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETT--------------EEECCSSSBHHHHT
T ss_pred EEEEEEECCEEEEEEEC-CCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECC--------------eecCCCcccHHHCC
Confidence 56899998889999999 65 999999999999999999999995432 12233467899999
Q ss_pred cccccEEEEeec
Q 015194 76 ISHGSIVFLSYD 87 (411)
Q Consensus 76 LkHGDml~l~y~ 87 (411)
|++|+.|+|.-.
T Consensus 73 i~~g~~i~l~~~ 84 (92)
T 1wxv_A 73 IQDGCRVMLIGK 84 (92)
T ss_dssp CCSSEEEEEESC
T ss_pred CCCCCEEEEEec
Confidence 999999999644
No 32
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.14 E-value=6.3e-06 Score=65.18 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=58.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.|+|+ |++|+.+|+++|.+..++|++.+.|..+- ..| ..+.+|+++||++|
T Consensus 13 m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~G--------------~~L-~d~~tL~~~~i~~~ 76 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSG--------------KQM-NDEKTAADYKILGG 76 (88)
T ss_dssp EEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETT--------------EEC-CTTSBGGGGTCCTT
T ss_pred EEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcCHHHEEEEECC--------------eEC-CCCCcHHHcCCCCC
Confidence 6789998775 5689999 69999999999999999999998885421 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|++...
T Consensus 77 ~~i~l~~r 84 (88)
T 3dbh_I 77 SVLHLVLR 84 (88)
T ss_dssp CEEEECCC
T ss_pred CEEEEEEe
Confidence 99998643
No 33
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.13 E-value=8.5e-06 Score=64.07 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=58.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhh---cCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQ---LRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI 76 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~---l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL 76 (411)
|-|+||+.+| ++.++|+ +++|+++|+++|.+. .++|++.+.|...- ..| ..+.+|+++|+
T Consensus 6 m~i~vk~~~g~~~~~~v~-~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~~i 69 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRME-PDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG--------------KIL-SDDVPIRDYRI 69 (85)
T ss_dssp EEEEEEETTSCEEEEEEC-TTSBHHHHHHHHHHHHCTTTCCGGGEEEEETT--------------EEC-CTTSBGGGGCC
T ss_pred EEEEEEECCCCEEEEEEC-CCCCHHHHHHHHHhhccccCCCHHHeEEEECC--------------EEC-cCCCCHHHcCC
Confidence 6789999876 5689999 699999999999998 67999988885421 122 34689999999
Q ss_pred ccccEEEEeecC
Q 015194 77 SHGSIVFLSYDG 88 (411)
Q Consensus 77 kHGDml~l~y~~ 88 (411)
++|+.|+|....
T Consensus 70 ~~g~~i~l~~~~ 81 (85)
T 2wyq_A 70 DEKNFVVVMVTK 81 (85)
T ss_dssp CTTSEEEEEEC-
T ss_pred CCCCEEEEEEcC
Confidence 999999997543
No 34
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.13 E-value=1.6e-05 Score=64.49 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhh---cCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQ---LRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI 76 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~---l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL 76 (411)
|-|+||+..| .+.++|+ +++|+++|+++|.+. .++|++.+.|...- ..| ..+.+|+++||
T Consensus 1 M~I~Vk~~~g~~~~~~v~-~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~ygI 64 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDID-PEETVKALKEKIESEKGKDAFPVAGQKLIYAG--------------KIL-NDDTALKEYKI 64 (95)
T ss_dssp CEEEEEETTCCEEEEECC-TTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT--------------EEC-CTTSBGGGGTC
T ss_pred CEEEEEeCCCCEEEEEEC-CCCHHHHHHHHHHhhcccCCCChhhEEEEECC--------------EEC-CCcCcHHHCCC
Confidence 8899999877 5789999 699999999999999 57999998885421 122 34689999999
Q ss_pred ccccEEEEeecC
Q 015194 77 SHGSIVFLSYDG 88 (411)
Q Consensus 77 kHGDml~l~y~~ 88 (411)
++|+.|+|....
T Consensus 65 ~~g~~i~l~~~~ 76 (95)
T 1uel_A 65 DEKNFVVVMVTK 76 (95)
T ss_dssp CSSSEEEEEESS
T ss_pred CCCCEEEEEEeC
Confidence 999999987654
No 35
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.37 E-value=4.2e-07 Score=70.19 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=58.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+.+| ++.++++ +++|+++|+++|.+..++|++.+.|..+- ..+ ..+.+|+++|+++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gi~~~~qrL~~~g--------------k~L-~d~~tL~~~~i~~g 64 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVD-SDTSILQLKEVVAKQQGVPADQLRVIFAG--------------KEL-PNHLTVQNCDLEQQ 64 (76)
Confidence 7899999988 5789999 69999999999999999999988885421 112 34689999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|++..
T Consensus 65 ~~i~l~~ 71 (76)
T 3b1l_X 65 SIVHIVQ 71 (76)
Confidence 9999864
No 36
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.08 E-value=9.9e-06 Score=70.14 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=60.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.++++ |++|+.+|+++|.+..++|++.+.|.... ..+ ..+.+|+++|+++|
T Consensus 1 M~i~vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~L~~~g--------------~~L-~d~~tL~~~~i~~~ 64 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 64 (152)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHHHHCcChHHeEEEECC--------------eEC-cCcccHHHhccCCC
Confidence 8899999988 7789999 69999999999999999999998885432 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|++...
T Consensus 65 ~~l~l~~~ 72 (152)
T 3b08_A 65 STLHLVLR 72 (152)
T ss_dssp CEEEEEEC
T ss_pred CeeEEEee
Confidence 99999765
No 37
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.07 E-value=1.2e-05 Score=66.23 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|.|++...++.++|+ +++|+++|+++|.+..++|++.+.|...- ..| .++.+|+++||++|+
T Consensus 26 m~I~Vk~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~gI~~g~ 89 (101)
T 2klc_A 26 MKVTVKTPKEKEEFAVP-ENSSVQQFKEEISKRFKSHTDQLVLIFAG--------------KIL-KDQDTLSQHGIHDGL 89 (101)
T ss_dssp EEEEEECSSCEEEEEEC-SCCCHHHHHHHHHHHHTCCGGGEEEEETT--------------EEE-CTTCCTGGGTCCTTC
T ss_pred EEEEEEeCCcEEEEEEC-CCCCHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCcCcHHHcCCCCCC
Confidence 56889998778899999 69999999999999999999998885421 112 346899999999999
Q ss_pred EEEEeecC
Q 015194 81 IVFLSYDG 88 (411)
Q Consensus 81 ml~l~y~~ 88 (411)
.|+|....
T Consensus 90 ~I~l~~~~ 97 (101)
T 2klc_A 90 TVHLVIKT 97 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99997653
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.07 E-value=1.1e-05 Score=64.28 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.|+|+ +++|+.+|+++|.+..+++++.|.|...- ..| ..+.+|+++|| +|
T Consensus 6 m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrLi~~G--------------k~L-~d~~tL~~~~i-~g 68 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVG-AQMNVKEFKEHIAASVSIPSEKQRLIYQG--------------RVL-QDDKKLQEYNV-GG 68 (90)
T ss_dssp EEEEEEETTCCEEEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBGGGGTC-TT
T ss_pred EEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECC--------------eEC-CCCCCHHHcCC-CC
Confidence 6799999876 5569999 69999999999999999999999885421 122 34789999999 89
Q ss_pred cEEEEeecCc
Q 015194 80 SIVFLSYDGE 89 (411)
Q Consensus 80 Dml~l~y~~~ 89 (411)
+.|+|.....
T Consensus 69 ~~i~l~~~~~ 78 (90)
T 4dwf_A 69 KVIHLVERAP 78 (90)
T ss_dssp EEEEEEECCC
T ss_pred cEEEEEecCC
Confidence 9999987653
No 39
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=8.4e-06 Score=67.73 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=58.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++..| ++.|+|+ +++|+++|+++|.+..+++++.|.|...- ..| ..+.+|+++||+.|
T Consensus 2 m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~~~i~~g 65 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLE-PSNTILETKTKLAQSISCEESQIKLIYSG--------------KVL-QDSKTVSECGLKDG 65 (106)
T ss_dssp -CEEEECTTCCEEEECCC-TTSBHHHHHHHHHHTTTSCGGGCEEEETT--------------EEC-CTTSBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCChhhEEEEECC--------------EEC-CCcCCHHHcCCCCC
Confidence 6789998654 6788999 69999999999999999999999885421 122 34789999999999
Q ss_pred cEEEEeecCc
Q 015194 80 SIVFLSYDGE 89 (411)
Q Consensus 80 Dml~l~y~~~ 89 (411)
+.|+|.....
T Consensus 66 ~~i~lv~~~~ 75 (106)
T 3m62_B 66 DQVVFMVSQK 75 (106)
T ss_dssp CEEEEECCC-
T ss_pred CEEEEEEcCC
Confidence 9999987654
No 40
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.06 E-value=6.8e-06 Score=63.92 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=59.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.++|+ |++|+++|+++|+++.++|++.+.|..+- ..| ..+.||+++|++.|
T Consensus 4 m~i~vk~~~g~~~~~~v~-~~~tv~~lk~~i~~~~gi~~~~qrL~~~G--------------~~L-~d~~tl~~~~i~~~ 67 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEG--------------QRI-ADNHTPKELGMEEE 67 (79)
T ss_dssp EEEEEECTTCCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTCCHHHHTCCTT
T ss_pred EEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHHCCCcccEEEEECC--------------EEe-CCCCCHHHcCCCCC
Confidence 6789999887 5689999 69999999999999999999998885431 122 34689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|++...
T Consensus 68 ~~i~l~~~ 75 (79)
T 2uyz_B 68 DVIEVYQE 75 (79)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 99998754
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.05 E-value=1.4e-05 Score=63.91 Aligned_cols=71 Identities=28% Similarity=0.351 Sum_probs=58.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.+++.+| ++.++|+ |++|+++|+++|.+..++|++.+.|..+. ..| ..+.+|+++|+++|
T Consensus 10 ~~i~v~~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G--------------k~L-~D~~tL~~~gi~~g 73 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEME-PSDTIENLKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 73 (88)
T ss_dssp CEEEEEETTSCEEEEECC-TTSBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTSBSGGGTCCTT
T ss_pred eEEEEEeCCCCEEEEEEC-CCChHHHHHHHHHHHHCcChhhEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 7788998887 4679999 69999999999999999999999985432 122 24689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 74 ~~i~l~~r 81 (88)
T 1sif_A 74 STLHLVLR 81 (88)
T ss_dssp CEEEEEC-
T ss_pred CEEEEEEe
Confidence 99999754
No 42
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.05 E-value=7.3e-06 Score=67.89 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=59.1
Q ss_pred CEEEEEcCC-CceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRD-GLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~-G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|-|+++. .+++|+|+ |++|+++|+++|+++.++|++.|.|... + ..| ..+.+|++.||+.|
T Consensus 29 m~I~VKtl~Gk~i~lev~-p~dTV~~lK~~Ia~k~Gip~~qQrLi~~-G-------------k~L-~D~~TL~dygI~~g 92 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCN-TDDTIGDLKKLIAAQTGTRWNKIVLKKW-Y-------------TIF-KDHVSLGDYEIHDG 92 (100)
T ss_dssp EEEEEECSSSSCEEEEEE-TTSBHHHHHHHHHHHHCCCGGGCEEEET-T-------------EEC-CSSCBHHHHTCCTT
T ss_pred EEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCHHHEEEEEC-C-------------EEC-CCCCCHHHcCCCCC
Confidence 567888885 46789999 7999999999999999999999999643 1 122 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|.|.
T Consensus 93 stlhL~~~ 100 (100)
T 1uh6_A 93 MNLELYYQ 100 (100)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 99999984
No 43
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.03 E-value=1.5e-05 Score=65.19 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=56.9
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|-|+++.| +.+|+|+ |++|+++|+++|+++.|+|++.+.|...- ..+ ....||++.||+.|
T Consensus 22 IqI~Vk~~~Gkk~~v~v~-p~DTI~~LK~~I~~k~Gip~~qQrLif~G--------------k~L-kD~~TL~dY~I~dg 85 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCL-GEDSVGDFKKVLSLQIGTQPNKIVLQKGG--------------SVL-KDHISLEDYEVHDQ 85 (93)
T ss_dssp EEEEEECTTSCEEEEEEE-TTSBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred EEEEEECCCCCEEEEEEC-CcCHHHHHHHHHHHHhCCCHHHEEEEeCC--------------EEc-cCcCCHHHcCCCCC
Confidence 3467777665 5679999 79999999999999999999999994311 122 24789999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|.|-|
T Consensus 86 stLhL~~ 92 (93)
T 3plu_A 86 TNLELYY 92 (93)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9999987
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.02 E-value=1.5e-05 Score=66.78 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++.+| ++.|+|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++||++|
T Consensus 36 m~I~Vk~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~~gI~~g 99 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 99 (111)
T ss_dssp EEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCCChHHEEEEECC--------------EEC-CCCCcHHHCCCCCC
Confidence 6789998886 6789999 69999999999999999999999885432 112 34679999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 100 s~I~l~~r 107 (111)
T 3vdz_A 100 STLHLVLR 107 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99998754
No 45
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.02 E-value=1.8e-05 Score=64.60 Aligned_cols=72 Identities=8% Similarity=0.116 Sum_probs=58.6
Q ss_pred CEEEEEcCCCce-EEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGLE-RVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~~-Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++...++ -|+++ +++|+.+|+++|++..++|++.|.|.... ..|. .+ +|+++||+.|
T Consensus 8 m~i~Vk~~g~~~~~l~v~-~~~TV~~lK~~I~~~tgip~~~QkLi~~G--------------k~L~-D~-tL~~~~I~~g 70 (96)
T 1wgg_A 8 YSVTVKWGKEKFEGVELN-TDEPPMVFKAQLFALTGVQPARQKVMVKG--------------GTLK-DD-DWGNIKMKNG 70 (96)
T ss_dssp EEEEEEETTEEEEEEEEE-SSSCHHHHHHHHHHHTCCCTTTSCCEETT--------------EECC-SS-CCCSCCCCSS
T ss_pred EEEEEEECCEEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECC--------------cCCC-CC-CHHHCCCCCC
Confidence 568899877778 59999 69999999999999999999999986422 1222 34 9999999999
Q ss_pred cEEEEeecCc
Q 015194 80 SIVFLSYDGE 89 (411)
Q Consensus 80 Dml~l~y~~~ 89 (411)
+.|+|--...
T Consensus 71 ~~i~l~~~~~ 80 (96)
T 1wgg_A 71 MTVLMMGSAD 80 (96)
T ss_dssp CEEECCCCCC
T ss_pred CEEEEEecch
Confidence 9999975544
No 46
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.01 E-value=2e-05 Score=65.77 Aligned_cols=72 Identities=28% Similarity=0.438 Sum_probs=59.7
Q ss_pred CEEEEEcC---CC-ceEEEecCC-CCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc
Q 015194 1 MLLRIRSR---DG-LERVTVDGA-HVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN 75 (411)
Q Consensus 1 MilRvRS~---~G-~~Rv~v~~p-~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG 75 (411)
|-|+|+++ .| ++.++|+ | ++|+.+|+++|.+..++|++.|.|.... ..+ ..+.+|+++|
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~-~l~~TV~~LK~~I~~~~gip~~~QrL~~~G--------------k~L-~D~~tL~~y~ 91 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQ-SLSENVGSLKEKIAGEIQIPANKQKLSGKA--------------GFL-KDNMSLAHYN 91 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEES-CSSSBHHHHHHHHHHHTTCCTTTSEEECSS--------------SBC-CTTSBTTTTT
T ss_pred EEEEEEecccCCCcEEEEEec-CCCCcHHHHHHHHHHHHCCCHHHeEEEECC--------------EEC-CCCCcHHHCC
Confidence 56899998 66 6789999 8 9999999999999999999999996532 112 3478999999
Q ss_pred cccccEEEEeecC
Q 015194 76 ISHGSIVFLSYDG 88 (411)
Q Consensus 76 LkHGDml~l~y~~ 88 (411)
|++|+.|+|....
T Consensus 92 I~~g~~l~l~~r~ 104 (111)
T 1we6_A 92 VGAGEILTLSLRE 104 (111)
T ss_dssp CSSSCEEEEECSS
T ss_pred CCCCCEEEEEEEc
Confidence 9999999997643
No 47
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.99 E-value=1.5e-05 Score=66.04 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=59.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+||+..| ++.++|+ +++|+.+|+++|.+..+++++.|.|...- ..| ..+.+|+++||++|
T Consensus 24 m~I~Vk~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~ygI~~g 87 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVR-STDTVFHMKRRLHAAEGVEPGSQRWFFSG--------------RPL-TDKMKFEELKIPKD 87 (106)
T ss_dssp EEEEEEETTTEEEEEEEC-TTSHHHHHHHHHHHTTCCCSTTCEEEETT--------------EEC-CTTSHHHHCCCSSS
T ss_pred EEEEEEcCCCCEEEEEeC-CCCcHHHHHHHHHHHHCcCcccEEEEECC--------------EEC-CCCCcHHHcCCCCC
Confidence 6789999877 5679999 69999999999999999999999985421 112 34789999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 88 ~ti~lv~~~ 96 (106)
T 1ttn_A 88 YVVQVIVSQ 96 (106)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEEeC
Confidence 999997643
No 48
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=9.7e-06 Score=66.87 Aligned_cols=69 Identities=28% Similarity=0.335 Sum_probs=57.5
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++...++.|+|+ +++|+++|+++|.+..++|++.|.|...- ..| ..+.+|+++||+.|+
T Consensus 29 i~I~Vk~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 29 LNIHIKSGQDKWEVNVA-PESTVLQFKEAINKANGIPVANQRLIYSG--------------KIL-KDDQTVESYHIQDGH 92 (101)
T ss_dssp CCEEEECSSCCCCBCCC-TTSBHHHHHHHHHHHHSCCSTTCCEEETT--------------EEC-CTTSBTTTTTCCTTE
T ss_pred EEEEEEECCEEEEEEeC-CCCCHHHHHHHHHHHHCcChHHEEEEECC--------------EEC-CCcCcHHHCCCCCCC
Confidence 45789997778899999 69999999999999999999998885421 112 347899999999999
Q ss_pred EEEEe
Q 015194 81 IVFLS 85 (411)
Q Consensus 81 ml~l~ 85 (411)
.|+|.
T Consensus 93 tI~lv 97 (101)
T 3m63_B 93 SVHLV 97 (101)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99985
No 49
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.98 E-value=1e-05 Score=65.52 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++...++.++|+ +++|+.+|+++|.+..+++++.+.|...- ..| ..+.+|+++|+++|+
T Consensus 18 m~i~Vk~~g~~~~~~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G--------------k~L-~D~~tL~~~gi~~g~ 81 (96)
T 1wx8_A 18 IRVSVKTPQDCHEFFLA-ENSNVRRFKKQISKYLHCNADRLVLIFTG--------------KIL-RDQDILSQRGILDGS 81 (96)
T ss_dssp EEEEEECSSSEEEEEEE-TTCCHHHHHHHHHHHTCSCTTTBCCEETT--------------EEC-CTTSCHHHHTCCTTE
T ss_pred EEEEEEECCeEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECC--------------EEC-CCcCCHHHCCCCCCC
Confidence 67899998668889999 69999999999999999999998885432 112 346899999999999
Q ss_pred EEEEeecC
Q 015194 81 IVFLSYDG 88 (411)
Q Consensus 81 ml~l~y~~ 88 (411)
.|+|....
T Consensus 82 ~i~l~~~~ 89 (96)
T 1wx8_A 82 TVHVVVRS 89 (96)
T ss_dssp EEECCBCC
T ss_pred EEEEEEeC
Confidence 99986543
No 50
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=1.4e-05 Score=66.16 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=61.7
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
+++++++..+++.|+++ |++|+.+|+++|.+..++|++.|.|...+.. . + ..+.+|+++||+.|+
T Consensus 10 ~~~~vk~~Gk~~~v~v~-~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~g------------k-L-~D~~tLs~~~I~~gs 74 (100)
T 2dzm_A 10 LDFRVEYRDRNVDVVLE-DTCTVGEIKQILENELQIPVSKMLLKGWKTG------------D-V-EDSTVLKSLHLPKNN 74 (100)
T ss_dssp EEEEEECSSCEEEEEEE-TTSBHHHHHHHHHHHHCCCTTTCCEECCSSS------------C-C-CTTSBHHHHCCCSEE
T ss_pred EEEEEEeCCeEEEEEEC-CCCcHHHHHHHHHHHHCCChhHeEEEccCCC------------C-C-CCcCCHHHcCCCCCC
Confidence 36889999999999999 6999999999999999999999998643321 1 2 347899999999999
Q ss_pred EEEEeecCc
Q 015194 81 IVFLSYDGE 89 (411)
Q Consensus 81 ml~l~y~~~ 89 (411)
.|++.....
T Consensus 75 tL~lvl~~~ 83 (100)
T 2dzm_A 75 SLYVLTPDL 83 (100)
T ss_dssp EEEECCSSS
T ss_pred EEEEEecCC
Confidence 999976654
No 51
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.96 E-value=3.3e-05 Score=62.41 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=54.8
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++..| .+.++|+ +++|+.+|+++|.+.. ++.+.|... + ..|.+.+.+|+++||++|
T Consensus 8 m~i~Vk~~~g~~~~~~v~-~~~TV~~LK~~i~~~~---~~~qrLi~~-G-------------k~L~D~~~tL~~y~i~~g 69 (95)
T 1wia_A 8 INVRLKFLNDTEELAVAR-PEDTVGTLKSKYFPGQ---ESQMKLIYQ-G-------------RLLQDPARTLSSLNITNN 69 (95)
T ss_dssp EEEEEEETTTEEEEEEEC-SSSBHHHHHHHHSSST---TTTCEEEET-T-------------EECCCSSCBTTTTTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHhhC---cCcEEEEEC-C-------------EEccCCcCCHHHcCCCCC
Confidence 6789999887 5689999 6999999999999987 566777432 1 222233389999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 70 ~~i~l~~~~ 78 (95)
T 1wia_A 70 CVIHCHRSP 78 (95)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEECC
Confidence 999997654
No 52
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.94 E-value=2.8e-05 Score=61.93 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=55.7
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
++++.....++.++++ +++|+++|+++|.+..++|++.|.|.... ..| ..+.+|+++|++.|+.
T Consensus 14 ~~~~~~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~G--------------k~L-~D~~tL~~~gi~~g~~ 77 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVS-PDCTVKDLKSQLQPITNVLPRGQKLIFKG--------------KVL-VETSTLKQSDVGSGAK 77 (85)
T ss_dssp EEEEEETTEEEEEEEC-TTSBHHHHHHHHHHHHCCCTTTCEEEETT--------------EEC-CTTCBTTTTTCCTTEE
T ss_pred EEEEEECCEEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECC--------------eEC-CCcCCHHHCCCCCCCE
Confidence 3455555567889999 69999999999999999999999985432 112 3468999999999999
Q ss_pred EEEeec
Q 015194 82 VFLSYD 87 (411)
Q Consensus 82 l~l~y~ 87 (411)
|+|...
T Consensus 78 l~l~~s 83 (85)
T 2kd0_A 78 LMLMAS 83 (85)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 998643
No 53
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.93 E-value=1.9e-05 Score=63.89 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|.|++ ..++.++|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++|+++|+
T Consensus 20 m~I~Vk~-g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~y~I~~gs 82 (93)
T 2l7r_A 20 MQLFVRA-QELHTFEVT-GQETVAQIKAHVASLEGIAPEDQVVLLAG--------------APL-EDEATLGQCGVEALT 82 (93)
T ss_dssp CEEEEES-SSEEEEECC-SSCBHHHHHHHHHHHHTCCGGGCEEEETT--------------EEC-CTTSBHHHHTCCSSC
T ss_pred EEEEEEC-CCEEEEEeC-CCCcHHHHHHHHHHHhCcChhHEEEEECC--------------EEC-CCCCcHHHCCCCCCC
Confidence 6789999 567889999 69999999999999999999999985431 112 347899999999999
Q ss_pred EEEEeec
Q 015194 81 IVFLSYD 87 (411)
Q Consensus 81 ml~l~y~ 87 (411)
.|+|...
T Consensus 83 tI~lv~r 89 (93)
T 2l7r_A 83 TLEVAGR 89 (93)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9998643
No 54
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=97.93 E-value=1.6e-05 Score=64.83 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=59.5
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+|. +.++|. |++|+.+|+++|+++.++|++.+.|..+- ..| ..+.||+++||+.|
T Consensus 22 m~I~Vk~~~g~~~~l~v~-~~~tv~~lK~~i~~~~gip~~~qrLif~G--------------k~L-~d~~tl~dy~i~~g 85 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEG--------------QRI-ADNHTPKELGMEEE 85 (97)
T ss_dssp EEEEEECTTCCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTCCHHHHTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCCChhhEEEEECC--------------eEc-CCCCCHHHCCCCCC
Confidence 67899999875 789999 69999999999999999999998885431 122 35689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|+|...
T Consensus 86 ~~I~l~~~ 93 (97)
T 1wyw_B 86 DVIEVYQE 93 (97)
T ss_dssp CEEEEEES
T ss_pred CEEEEEEe
Confidence 99999754
No 55
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=97.93 E-value=2.2e-05 Score=62.34 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=55.8
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.++|+ |++|+++|+++|.+..++|++.|.|...- ..+ ..+.+|+++|+ +|
T Consensus 18 m~i~Vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~~~i-~g 80 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVG-AQMNVKEFKEHIAASVSIPSEKQRLIYQG--------------RVL-QDDKKLQEYNV-GG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBGGGGTC-TT
T ss_pred EEEEEEcCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECC--------------EEC-CCCCcHHHcCC-CC
Confidence 5689999876 4579999 69999999999999999999999885421 122 34789999999 89
Q ss_pred cEEEEe
Q 015194 80 SIVFLS 85 (411)
Q Consensus 80 Dml~l~ 85 (411)
+.|+|-
T Consensus 81 ~~i~lv 86 (88)
T 4eew_A 81 KVIHLV 86 (88)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999984
No 56
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.93 E-value=1.8e-05 Score=63.03 Aligned_cols=71 Identities=24% Similarity=0.236 Sum_probs=58.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.+++-.| ++.++|+ |++|+++|+++|.+..++|++.|.|...- ..+...+.+|++.|++.|
T Consensus 11 ~~i~vk~l~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~lL~D~~tL~~y~I~~g 75 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVD-YRDTLLVVKQKIERSQHIPVSKQTLIVDG--------------IVILREDLTVEQCQIVPT 75 (84)
T ss_dssp EEEEEEETTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETT--------------EECCCSSSBHHHHTCCTT
T ss_pred eEEEEEecCCcEEEEEEC-CCChHHHHHHHHHHHHCcChHHEEEEECC--------------EEecCCcCCHHHcCCCCC
Confidence 6788888777 4679999 69999999999999999999999985421 120134689999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|..
T Consensus 76 s~i~lv~ 82 (84)
T 2kk8_A 76 SDIQLEV 82 (84)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
Confidence 9999864
No 57
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.92 E-value=1.5e-05 Score=64.91 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=57.3
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++...++.|+++ +++|+.+|+++|.+..++|++.|.|.... ..+ + +.+|+++||+.|+
T Consensus 18 ~~i~Vk~~g~~~~i~v~-~~~TV~~LK~~I~~~tgip~~~QrL~~~G--------------k~L-d-d~tL~~~~i~~g~ 80 (95)
T 1v86_A 18 VDLKIIWNKTKHDVKVP-LDSTGSELKQKIHSITGLPPAMQKVMYKG--------------LVP-E-DKTLREIKVTSGA 80 (95)
T ss_dssp EEEEEEETTEEEEEEEC-TTSBHHHHHHHHHHHHCSCSTTCCCBSSS--------------BCC-S-SSBHHHHCCCTTE
T ss_pred EEEEEEECCEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEEECC--------------eeC-C-cCcHHHCCCCCCC
Confidence 45888888788999999 69999999999999999999999986422 112 2 3499999999999
Q ss_pred EEEEee
Q 015194 81 IVFLSY 86 (411)
Q Consensus 81 ml~l~y 86 (411)
.|+|--
T Consensus 81 ~i~lv~ 86 (95)
T 1v86_A 81 KIMVVG 86 (95)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999853
No 58
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.92 E-value=2.8e-05 Score=66.62 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=59.6
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|++...++.|+|+ +++|+.+|+++|.+..+++++.|.|...- ..| ..+.+|+++||++|+
T Consensus 33 m~I~Vk~~g~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~dygI~~gs 96 (125)
T 1j8c_A 33 IKVTVKTPKEKEEFAVP-ENSSVQQFKEAISKRFKSQTDQLVLIFAG--------------KIL-KDQDTLIQHGIHDGL 96 (125)
T ss_dssp EEEEEECSSCEEEEEEC-TTCCHHHHHHHHHHHHCSCSSSEEEEETT--------------EEE-STTSCGGGTTCSSSE
T ss_pred EEEEEEeCCeEEEEEEC-CCCcHHHHHHHHHHHHCcCcceEEEEECC--------------EEc-CCCCCHHHcCCCCCC
Confidence 67899998667889999 69999999999999999999999985432 112 346899999999999
Q ss_pred EEEEeecCc
Q 015194 81 IVFLSYDGE 89 (411)
Q Consensus 81 ml~l~y~~~ 89 (411)
.|+|.....
T Consensus 97 tI~lv~~~~ 105 (125)
T 1j8c_A 97 TVHLVIKRD 105 (125)
T ss_dssp EEEEEEC--
T ss_pred EEEEEeccC
Confidence 999976543
No 59
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.89 E-value=1.6e-05 Score=64.03 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred CEEEEEcCCCceEE-EecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGLERV-TVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~~Rv-~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+|++...++.| +++ +++|+.+|+++|++..++|++.|.|..-.- .| ..+ ..+.+|+++||+.|
T Consensus 8 m~i~Vk~~g~~~~i~~v~-~~~TV~~lK~~I~~~~gip~~~QkLi~~k~-------~G----k~L-~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 8 LPIIVKWGGQEYSVTTLS-EDDTVLDLKQFLKTLTGVLPERQKLLGLKV-------KG----KPA-ENDVKLGALKLKPN 74 (90)
T ss_dssp CCEEEEETTEEEEECSCC-SSSBHHHHHHHHHHHTCCCTTTCEEESCEE-------TT----EEC-CTTSBHHHHTCCTT
T ss_pred EEEEEEECCEEEEEEEeC-CCCCHHHHHHHHHHHHCcCHHHeEEEeecc-------CC----cCc-CCCCCHHHcCCCCC
Confidence 56889988788889 999 699999999999999999999999973100 01 112 34689999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|.|--..
T Consensus 75 ~~l~l~~~~ 83 (90)
T 1v5t_A 75 TKIMMMGTR 83 (90)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEecC
Confidence 999996544
No 60
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.85 E-value=3.8e-05 Score=66.39 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=59.6
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|.|++.+| ++.++++ +++|+++|+++|.+..++|++.+.|..+. ..| ..+.+|+++|+++|
T Consensus 77 ~~i~Vk~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~qrL~~~g--------------~~L-~d~~tL~~~~i~~~ 140 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 140 (152)
T ss_dssp EEEEEEESSSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred cceeeeecCCCEEEEEeC-CCCcHHHHHHHHHHHhCcChhhEEEEECC--------------EEC-CCCCCHHHcCCCCC
Confidence 5678998888 8899999 69999999999999999999999985432 122 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 141 ~~i~l~~r 148 (152)
T 3b08_A 141 STLHLVLR 148 (152)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999754
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=97.83 E-value=4.8e-05 Score=68.44 Aligned_cols=72 Identities=25% Similarity=0.325 Sum_probs=60.6
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.||+.+| ++.++|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++|+++|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~y~I~~g 64 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 64 (169)
T ss_dssp CEEEEEETTSCEEEEECC-TTCBHHHHHHHHHHHHCCCTTTEEEEETT--------------EEC-CTTSBGGGGTCCTT
T ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHHCcCHHHEEEEECC--------------ccc-cCcCcHHHcCCCCC
Confidence 8899999987 5689999 69999999999999999999999985422 112 34789999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
+.|+|....
T Consensus 65 stI~Lvlrl 73 (169)
T 3l0w_B 65 STLHLVLRL 73 (169)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEEe
Confidence 999998653
No 62
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.82 E-value=5.3e-05 Score=60.97 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=59.0
Q ss_pred CEEEEEcCCCc---eEEEecCCCCcHHHHHHHHHhhc--CCCCCCceeeccccccccCCCCcccccccCCCCCCCcccc-
Q 015194 1 MLLRIRSRDGL---ERVTVDGAHVTVAELKTIIQSQL--RIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSL- 74 (411)
Q Consensus 1 MilRvRS~~G~---~Rv~v~~p~~t~~~L~~kI~~~l--~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~l- 74 (411)
|-|.||+..|. ..|+|+ +++|+.+|+++|++.. +++++.|.|...- ..| ..+.+|+++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~-~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~G--------------k~L-~D~~tL~~~~ 71 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGD-RGWSVGHLKAHLSRVYPERPRPEDQRLIYSG--------------KLL-LDHQCLRDLL 71 (93)
T ss_dssp CEEEEECSSSSCCCEEEECC-TTSCHHHHHHHHHHHSTTCCCTTTCEEEETT--------------EEC-CSSSCHHHHS
T ss_pred EEEEEEeCCCCeEEEEEecC-CCCcHHHHHHHHHHHhcCCCChHHeEEEECC--------------EEC-cCcCCHHHHh
Confidence 67899999985 788888 6999999999999999 8999999995421 112 246899999
Q ss_pred -ccccccEEEEeecC
Q 015194 75 -NISHGSIVFLSYDG 88 (411)
Q Consensus 75 -GLkHGDml~l~y~~ 88 (411)
|+++|+.|+|-...
T Consensus 72 ~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 72 PKQEKRHVLHLVCNV 86 (93)
T ss_dssp CSSSCSEEEEEECCC
T ss_pred cCCCCCCEEEEEeCC
Confidence 99999999987543
No 63
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=4.8e-05 Score=61.24 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=56.4
Q ss_pred CEEEEEcCCCceE---E-EecCCCCcHHHHHHHHHhh-cCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc
Q 015194 1 MLLRIRSRDGLER---V-TVDGAHVTVAELKTIIQSQ-LRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN 75 (411)
Q Consensus 1 MilRvRS~~G~~R---v-~v~~p~~t~~~L~~kI~~~-l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG 75 (411)
|-|-|++..|... | +|+ |++|+.+|+++|++. -+++++.|.|....++ ..| ..+.+|++.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~-~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~G------------k~L-~D~~tL~~y~ 76 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVE-PHATIAEIKNLFTKTHPQWYPARQSLRLDPKG------------KSL-KDEDVLQKLP 76 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEEC-SSCBHHHHHHHHHHHCSSSCTTTCCEESSTTS------------CCC-CTTCBTTTSS
T ss_pred EEEEEECCCCCEEeeEEeEcC-CCCcHHHHHHHHHHHhcCCChHHeEEEecCCC------------cCc-CCCCCHHHcC
Confidence 5688899887654 6 999 799999999999995 6899999998654321 222 3478999999
Q ss_pred cccccEEEEe
Q 015194 76 ISHGSIVFLS 85 (411)
Q Consensus 76 LkHGDml~l~ 85 (411)
|+.|+.||+.
T Consensus 77 i~~~stl~~K 86 (88)
T 2dzj_A 77 VGTTATLYFR 86 (88)
T ss_dssp CCSEEEEEEC
T ss_pred CCCCCEEEEE
Confidence 9999999874
No 64
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.79 E-value=4.4e-05 Score=62.43 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=57.7
Q ss_pred EEEEEcCCC---ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeecc-ccccccCCCCcccccccCCCCCCCccccccc
Q 015194 2 LLRIRSRDG---LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTN-QNLLLAKSPSDLLQFTDMANPDRPLSSLNIS 77 (411)
Q Consensus 2 ilRvRS~~G---~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~-~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk 77 (411)
-|.|++..+ ..-++++ |++|+++|+++|....|+|++.|.|... +++. ...+...+++|++.||+
T Consensus 17 ~l~It~s~~~~~~~~~~v~-~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~----------~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLA-KDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTC----------VSTMDNNDAQLGYYANS 85 (95)
T ss_dssp EEEEEESSCSCEEEEEEEE-TTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEE----------EEECCCTTSBHHHHCCS
T ss_pred EEEEEECCCCceEEEEEeC-ccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcc----------cceeCCCCCCHhHCCcC
Confidence 367888887 6888999 6999999999999999999999999543 1110 02233467899999999
Q ss_pred cccEEEEe
Q 015194 78 HGSIVFLS 85 (411)
Q Consensus 78 HGDml~l~ 85 (411)
.|+.|+|-
T Consensus 86 ~gstihlv 93 (95)
T 2kjr_A 86 DGLRLHVV 93 (95)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 99999874
No 65
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.76 E-value=4.8e-05 Score=63.49 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=56.3
Q ss_pred EEEEEcCC---CceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc-c
Q 015194 2 LLRIRSRD---GLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI-S 77 (411)
Q Consensus 2 ilRvRS~~---G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL-k 77 (411)
=++|.... ++..++++ |++|+++|+++|.++.++|++.|.+..... +...++||.+.|| .
T Consensus 26 ~v~v~d~~s~~~~i~l~V~-ps~TV~~LK~~I~~k~Gipp~~QRli~ggk---------------ll~D~~TL~~ygI~~ 89 (105)
T 4dbg_A 26 WVSVEDAQMHTVTIWLTVR-PDMTVASLKDMVFLDYGFPPVLQQWVIGQR---------------LARDQETLHSHGVRQ 89 (105)
T ss_dssp EEEEEESSSCCEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETTE---------------EECTTCBTGGGTCCS
T ss_pred EEEEEccCCCCceEEEEEC-CcChHHHHHHHHHHHhCCCHHHEEEeccCe---------------EccCcCcHHHcCCCC
Confidence 35666655 79999999 799999999999999999999988754221 1235789999999 5
Q ss_pred cccEEEEeec
Q 015194 78 HGSIVFLSYD 87 (411)
Q Consensus 78 HGDml~l~y~ 87 (411)
.|+-+||-.-
T Consensus 90 ~G~t~hL~l~ 99 (105)
T 4dbg_A 90 NGDSAYLYLL 99 (105)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEE
Confidence 9999998654
No 66
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.76 E-value=9.2e-05 Score=60.04 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=57.6
Q ss_pred EEEEEcCCC--ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeecc-ccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 2 LLRIRSRDG--LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTN-QNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 2 ilRvRS~~G--~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~-~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
-|.|.++.+ .+-++++ |++|+++|+++|....++|++.|.|... +.. +....+...+++|++.||+.
T Consensus 9 ~l~I~~~~~~~~~~~~v~-~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g---------~~~~~l~~D~~tL~~y~i~~ 78 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYS-RSLTIAEFKCKLELVVGSPASCMELELYGADD---------KFYSKLDQEDALLGSYPVDD 78 (95)
T ss_dssp EEEEEETTSSSCEEEEEC-TTSBHHHHHHHHHHHTCSCTTTCBCEEECSSS---------CEEEECCCSSSBTTSSSCCT
T ss_pred EEEEEECCCCeeEEEEcC-ccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCC---------ccccccCCCcCCHhHCCCCC
Confidence 367888777 6889999 6999999999999999999999999543 210 00012334578999999999
Q ss_pred ccEEEEe
Q 015194 79 GSIVFLS 85 (411)
Q Consensus 79 GDml~l~ 85 (411)
|+.|+|.
T Consensus 79 g~~l~v~ 85 (95)
T 1v6e_A 79 GCRIHVI 85 (95)
T ss_dssp TCEEEEB
T ss_pred CCEEEEE
Confidence 9999985
No 67
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.71 E-value=8.9e-05 Score=61.51 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=58.4
Q ss_pred CEEEEEcCCC----ceEEEecC-------CC-CcHHHHHHHHHhhc--CCCCCC-ceeeccccccccCCCCcccccccCC
Q 015194 1 MLLRIRSRDG----LERVTVDG-------AH-VTVAELKTIIQSQL--RIPVES-QTLSTNQNLLLAKSPSDLLQFTDMA 65 (411)
Q Consensus 1 MilRvRS~~G----~~Rv~v~~-------p~-~t~~~L~~kI~~~l--~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~ 65 (411)
|-|.|++..| ++.|+++. ++ +|+.+|+++|.+.. +++++. +.|...- ..|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~G--------------k~L- 77 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCG--------------RKL- 77 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETT--------------EEC-
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECC--------------eEC-
Confidence 6689999999 89999440 34 99999999999999 999999 8885321 122
Q ss_pred CCCCCccccccccccEEEEeecC
Q 015194 66 NPDRPLSSLNISHGSIVFLSYDG 88 (411)
Q Consensus 66 ~~~~tl~~lGLkHGDml~l~y~~ 88 (411)
..+.+|+++|+++|+.|+|....
T Consensus 78 ~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 78 KDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CTTCBHHHHTCCTTCEEEEEESS
T ss_pred CCCCcHHHcCCCCCCEEEEEeCC
Confidence 34689999999999999997543
No 68
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=97.68 E-value=7.8e-05 Score=63.43 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=61.4
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccc--
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH-- 78 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH-- 78 (411)
|.||+|...-+.-++|+ |++|+.+|+++|....++|++.+.|..+- ..| ..++||++.||++
T Consensus 3 vFl~Ikr~ktTI~ldve-~sdTV~~lK~kI~~~~giPp~qQrLI~~G--------------k~L-eD~kTL~dy~I~~~t 66 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAK-ESSTVFELKRIVEGILKRPPDEQRLYKDD--------------QLL-DDGKTLGECGFTSQT 66 (118)
T ss_dssp EEEEEEEBTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBTTTTTCCGGG
T ss_pred eEEEEecCCEEEEEEcC-CCChHHHHHHHHHHHHCCCHHHeEEEeCC--------------eEC-CCcCCHHHcCCCcCc
Confidence 46888888888888999 79999999999999999999999996421 122 4589999999999
Q ss_pred -----ccEEEEeecCc
Q 015194 79 -----GSIVFLSYDGE 89 (411)
Q Consensus 79 -----GDml~l~y~~~ 89 (411)
|+.|+|.+...
T Consensus 67 a~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 67 ARPQAPATVGLAFRAD 82 (118)
T ss_dssp SBTTBCEEEEEEECCS
T ss_pred ccCCCCCEEEEEEecC
Confidence 99999988653
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.67 E-value=8.7e-05 Score=66.28 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=59.7
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.++|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++||++|
T Consensus 21 m~i~Vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~QrL~~~g--------------~~L-~d~~tL~~~~i~~~ 84 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 84 (172)
T ss_dssp EEEEEEETTTEEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTCBTGGGTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECC--------------ccc-cccCCHhHcCCccc
Confidence 6789998887 6789999 69999999999999999999999986432 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 85 ~~l~l~~~ 92 (172)
T 3u30_A 85 STLHLVLR 92 (172)
T ss_dssp CEEEEEEC
T ss_pred ceeeeeec
Confidence 99999754
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=97.67 E-value=9e-05 Score=68.03 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=59.4
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.||+.+| ++.|+|+ |++|+.+|+++|.+..++|++.|.|.... ..| ..+.+|+++||++|
T Consensus 106 MqI~VKtl~Gkt~~l~V~-~s~TV~~LK~kI~~~~gIp~~~QrLi~~G--------------k~L-~D~~tL~dygI~~g 169 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 169 (189)
T ss_dssp EEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETT--------------EEC-CTTCBGGGGTCCTT
T ss_pred eeeeeecCCCCEEEEEeC-CCCcHHHHHHHHHhccCCCHHHEEEEECC--------------EEC-CCCCCHHHCCCCCC
Confidence 6789999886 5789999 69999999999999999999999885432 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 170 stI~Lvlr 177 (189)
T 3q3f_A 170 STLHLVLR 177 (189)
T ss_dssp CEEEECCC
T ss_pred CEEEEEEE
Confidence 99999754
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.66 E-value=0.00012 Score=64.36 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=60.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceee-ccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLS-TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls-~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|-|.|++..| ++.++|+ |++|+.+|+++|++..++|++.|.|. ...+ ..| ..+.+|++.||++
T Consensus 3 m~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g-------------~~L-~d~~tL~~y~i~~ 67 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLS-SSMSVSELKAQITQKIGVHAFQQRLAVHPSG-------------VAL-QDRVPLASQGLGP 67 (159)
T ss_dssp CEEEEEETTSCEEEEECC-TTCCHHHHHHHHHHHHCCCGGGEEEEEETTC-------------CBC-CTTSCGGGGTCCT
T ss_pred eEEEEEECCCCEEEEEeC-CCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC-------------CCC-CCCCCHHHcCCCC
Confidence 6789998888 4689999 69999999999999999999999987 4222 112 3578999999999
Q ss_pred ccEEEEeec
Q 015194 79 GSIVFLSYD 87 (411)
Q Consensus 79 GDml~l~y~ 87 (411)
|+.|+|-..
T Consensus 68 ~~~l~l~~~ 76 (159)
T 3rt3_B 68 GSTVLLVVD 76 (159)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEcc
Confidence 999999755
No 72
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.66 E-value=6e-05 Score=64.16 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=59.5
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccc---
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNIS--- 77 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk--- 77 (411)
|.||+|+..-++-++|+ |++|+.+|+++|....++|++.|.|..+- ..| ..++||++.||+
T Consensus 3 mfl~ir~~ktti~lev~-~sdTV~~lK~kI~~~egIP~~qQrLi~~G--------------k~L-eD~~TLsdy~I~~~~ 66 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAK-ESSTVFELKRIVEGILKRPPEEQRLYKDD--------------QLL-DDGKTLGECGFTSQT 66 (118)
T ss_dssp EEEEEEEBTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTSBHHHHTCCTTT
T ss_pred EEEEEecCCEEEEEEeC-CcChHHHHHHHHHHHhCCCHHHeEEEECC--------------eEC-CCCCCHHHcCccccc
Confidence 56788876656889999 69999999999999999999999996421 112 457999999999
Q ss_pred ----cccEEEEeecC
Q 015194 78 ----HGSIVFLSYDG 88 (411)
Q Consensus 78 ----HGDml~l~y~~ 88 (411)
.+..|+|.+..
T Consensus 67 a~~q~~stL~L~lr~ 81 (118)
T 2fnj_B 67 ARPQAPATVGLAFRA 81 (118)
T ss_dssp SBTTBCEEEEEEEBS
T ss_pred ccCCCCCEEEEEecC
Confidence 79999998763
No 73
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.64 E-value=0.00012 Score=60.35 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=53.5
Q ss_pred CEEEEEcCCCc---eEEEecCCCCcHHHHHHHHHhhc-CC-CCCCceeeccccccccCCCCcccccccCCCCCCCcccc-
Q 015194 1 MLLRIRSRDGL---ERVTVDGAHVTVAELKTIIQSQL-RI-PVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSL- 74 (411)
Q Consensus 1 MilRvRS~~G~---~Rv~v~~p~~t~~~L~~kI~~~l-~~-~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~l- 74 (411)
|-|.||+..|. ..|+|+ |++|+++|+++|++++ +. |++.|.|... + ..| ..+.+|++.
T Consensus 24 m~I~VK~~~g~~~~i~l~v~-~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~-G-------------k~L-~D~~tL~~y~ 87 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCF-LNWTVGKLKTHLSNVYPSKPLTKDQRLVYS-G-------------RLL-PDHLQLKDIL 87 (99)
T ss_dssp EEEEEECTTSSSCCEEEEEC-TTSBHHHHHHHHHHHSTTCCCTTTCCEEET-T-------------EEE-CTTSBTHHHH
T ss_pred EEEEEEcCCCCEEEEEEEcC-CCCHHHHHHHHHHHHhcCCCChhhEEEEEC-C-------------EEC-CCCCCHHHHh
Confidence 67899999995 578889 7999999999999986 34 4588888432 1 112 246899999
Q ss_pred -ccccccEEEE
Q 015194 75 -NISHGSIVFL 84 (411)
Q Consensus 75 -GLkHGDml~l 84 (411)
||+.|+.|+|
T Consensus 88 ~~I~~~~tihL 98 (99)
T 2kdb_A 88 RKQDEYHMVHL 98 (99)
T ss_dssp TTTCSEEEEEE
T ss_pred cCCCCCCEEEe
Confidence 9999999887
No 74
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.63 E-value=0.00011 Score=60.25 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=56.3
Q ss_pred EEEEcCCC---ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeecc-ccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 3 LRIRSRDG---LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTN-QNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 3 lRvRS~~G---~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~-~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|.|.+... .+-++++ |++|+++|+++|....|+|++.|.|... .+. . ....|...+++|++.||+.
T Consensus 17 l~It~s~~~~~~~e~~v~-~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g------~---~~~~L~~D~~tL~~Y~I~~ 86 (97)
T 2kj6_A 17 LHITHANLKSFSADARFS-PQMSVEAVKEKLWKKCGTSVNSMALELYDDSG------S---KVAVLSDDSRPLGFFSPFD 86 (97)
T ss_dssp EEEEETTSSCCCEEEEEC-TTCCHHHHHHHHHHHHCCCTTSEEEEEECSSS------C---BCCCSSGGGSCHHHHCCCS
T ss_pred EEEEECCCCceEEEEEeC-CCChHHHHHHHHHHHHCcCHHHeEEEEecCCC------c---ccceecCCcCCHHHCCCCC
Confidence 67777666 6788999 6999999999999999999999999432 210 0 0012334578999999999
Q ss_pred ccEEEEe
Q 015194 79 GSIVFLS 85 (411)
Q Consensus 79 GDml~l~ 85 (411)
|+.|+|-
T Consensus 87 g~~Ihlv 93 (97)
T 2kj6_A 87 GFRLHII 93 (97)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 9999984
No 75
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=97.61 E-value=8.4e-06 Score=69.92 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=0.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.|+|+ |++|+++|+++|.+..++|++.|.|.... ..| ..+.+|+++||++|
T Consensus 1 M~I~Vk~~~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~~~I~~g 64 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 64 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCcChHHEEEEECC--------------EEC-CCCCchhhhccCCC
Confidence 7789999886 6789999 69999999999999999999998885422 112 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 65 sti~l~~r 72 (128)
T 3u5e_m 65 STLHLVLR 72 (128)
T ss_dssp --------
T ss_pred CEEEEEEE
Confidence 99998754
No 76
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.60 E-value=4.3e-05 Score=63.79 Aligned_cols=72 Identities=24% Similarity=0.318 Sum_probs=56.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCC---------------CceeeccccccccCCCCcccccccC
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVE---------------SQTLSTNQNLLLAKSPSDLLQFTDM 64 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~---------------~~~Ls~~~~~~~~~~p~~~~~~~~l 64 (411)
|-|.|++-+| ++-|+|+ |++|+.+|+++|+++.+++++ .+.|..+ + ..|
T Consensus 8 M~I~Vk~l~g~~~~v~V~-~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~-G-------------k~L 72 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVV-QNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA-G-------------EKL 72 (105)
T ss_dssp EEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS-S-------------CEE
T ss_pred EEEEEEecCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC-C-------------cCc
Confidence 7789988887 6689999 699999999999999987763 3456421 1 122
Q ss_pred CCCCCCccccccccccEEEEeec
Q 015194 65 ANPDRPLSSLNISHGSIVFLSYD 87 (411)
Q Consensus 65 ~~~~~tl~~lGLkHGDml~l~y~ 87 (411)
.+.++||++.||+.|+.|++-..
T Consensus 73 ~dD~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 73 TEDRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp CCSSSBHHHHTCCSSEEEEEEEC
T ss_pred cCCcCCHHHcCCCCCCEEEEEeh
Confidence 24578999999999999998644
No 77
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.57 E-value=0.00023 Score=54.83 Aligned_cols=69 Identities=10% Similarity=0.211 Sum_probs=57.8
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..+.+. ++++++.|++++.++.++++..+.+.-+- ..+ .++.|..++|+..|
T Consensus 2 i~lkV~~~~g~~v~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG--------------~~l-~~~~Tp~~l~medg 65 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDG--------------QPI-NETDTPAQLEMEDE 65 (72)
T ss_dssp EEEEEECTTSCEEEEEEC-TTSCTHHHHHHHHHHHTCCTTTCEEEETT--------------EEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcceEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 57999999995 889999 69999999999999999999888875432 122 45789999999999
Q ss_pred cEEEEe
Q 015194 80 SIVFLS 85 (411)
Q Consensus 80 Dml~l~ 85 (411)
|.|.+.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 999863
No 78
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.57 E-value=0.0002 Score=62.87 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.++|+ |++|+++|+++|++..++|++.+.|..+- ..| ..+.+|++.|+++|
T Consensus 82 m~i~vk~~~g~~~~~~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G--------------~~L-~d~~tL~~y~i~~g 145 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEG--------------KPL-EDQLPLGEYGLKPL 145 (159)
T ss_dssp EEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTSBGGGGTCCTT
T ss_pred EEEEEECCCCCEEEEEeC-CCCCHHHHHHHHHHHHCCCHHHEEEEECC--------------eec-CCCCCHHHcCCCCC
Confidence 4567888876 6789999 69999999999999999999999985432 122 34789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 146 ~~l~l~~r 153 (159)
T 3rt3_B 146 STVFMNLR 153 (159)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999754
No 79
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.56 E-value=0.0002 Score=60.87 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=58.4
Q ss_pred EEEEEcCCC--ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDG--LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G--~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-|.|.++.+ .+-++++ |++|+++|+++|....|+|++.|.|...... + .....|...+++|++.||+.|
T Consensus 8 ~l~V~~~~~~~~~e~~v~-~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~-------~-~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYP-AGMSLNDLKKKLELVVGTTVDSMRIQLFDGD-------D-QLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEESSCCSCEEEEEE-TTSBHHHHHHHHHHHHCCCTTTEEEEEECSS-------S-SEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEECCCCccEEEEeC-CCCcHHHHHHHHHHHhCCCHHHeEEEEecCC-------C-ccccccCCCcCCHHHCCCCCC
Confidence 367888777 6888999 6999999999999999999999999543210 0 001123346789999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|.-
T Consensus 79 ~~ihvvd 85 (122)
T 1t0y_A 79 YRIHAVD 85 (122)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999863
No 80
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.55 E-value=0.0002 Score=56.31 Aligned_cols=68 Identities=9% Similarity=0.244 Sum_probs=57.5
Q ss_pred CEEEEEcCCC--ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDG--LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G--~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|.|+|++.+| ...+.+. +++++..|++++.++.+++++.+.+.-+- ..+ .++.|..+||+..
T Consensus 8 i~ikV~~~~g~~~i~~~i~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG--------------~~l-~~~~Tp~~l~med 71 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLS-PDSPLKVLMSHYEEAMGLSGHKLSFFFDG--------------TKL-SGKELPADLGLES 71 (79)
T ss_dssp EEEEEECSSTTCEEEEEEC-TTSCHHHHHHHHHHHHTCTTCCCEEEETT--------------EEC-CSCCCHHHHTCCT
T ss_pred EEEEEEeCCCCEEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECC--------------EEc-CCCCCHHHcCCCC
Confidence 5799999999 4799999 69999999999999999999888875432 122 4578999999999
Q ss_pred ccEEEE
Q 015194 79 GSIVFL 84 (411)
Q Consensus 79 GDml~l 84 (411)
||.|.+
T Consensus 72 gD~Idv 77 (79)
T 3a4r_A 72 GDLIEV 77 (79)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999986
No 81
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.54 E-value=0.00019 Score=59.30 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=53.1
Q ss_pred EEEEcCC----C-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccc
Q 015194 3 LRIRSRD----G-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNIS 77 (411)
Q Consensus 3 lRvRS~~----G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk 77 (411)
|.||.++ | ++-|+|+ |++|+++|+++|+++.++|++.|.|... + ..| ..+.||++.||+
T Consensus 18 i~V~~~~~~~~~~~~~lev~-~~~TV~~lK~kI~~k~gip~~qQrLI~~-G-------------KiL-~D~~TL~~y~I~ 81 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETR-LHITGRELRSKIAETFGLQENYIKIVIN-K-------------KQL-QLGKTLEEQGVA 81 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEE-SSSBHHHHHHHHHHHTTCCSTTCEEEET-T-------------EEC-CTTSBHHHHTCC
T ss_pred EEEEecCCCCCCcEEEEEeC-CcCHHHHHHHHHHHHHCcCHHHeEEEeC-C-------------eEC-CCCCcHHHcCCC
Confidence 5677776 3 5789999 6999999999999999999999998432 1 222 357899999999
Q ss_pred cccEEEE
Q 015194 78 HGSIVFL 84 (411)
Q Consensus 78 HGDml~l 84 (411)
+|+.|.+
T Consensus 82 ~gsti~v 88 (100)
T 1wju_A 82 HNVKAMV 88 (100)
T ss_dssp SSEEEEE
T ss_pred CCCEEEE
Confidence 9998854
No 82
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.53 E-value=1.2e-05 Score=71.29 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=0.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.|+|+ |++|+++|+++|.+..++|++.|.|.... ..| ..+.+|+++||++|
T Consensus 1 MqI~VK~l~G~~~~l~V~-~~~TV~~LK~~I~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~dygI~~g 64 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 64 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECC--------------EEc-cccCcHHHcCCCCC
Confidence 7789999877 6789999 69999999999999999999998885422 112 34689999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
+.|+|...
T Consensus 65 stL~Lvlr 72 (152)
T 3u5c_f 65 STLHLVLR 72 (152)
T ss_dssp --------
T ss_pred CEEEEEee
Confidence 99998753
No 83
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00026 Score=59.48 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=56.8
Q ss_pred EEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 3 LRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 3 lRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
|.+++-.| ++.++|+ |++|+.+|+++|.+..++|++.+.|.... ..| ..+.+|+++|+++|+.
T Consensus 12 i~vk~l~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~G--------------k~L-~D~~tL~~ygI~~gst 75 (114)
T 2kdi_A 12 IFAKTLTGKTITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIWAG--------------KQL-EDGRTLSDYNIQREST 75 (114)
T ss_dssp EEEEETTCCEEEEECC-TTCBHHHHHHHHHHHHCCCGGGEEEEETT--------------EEC-CTTCBTTTTTCCSSCE
T ss_pred EEEEeCCCcEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECC--------------EEC-CCCCcHHHCCCCCCCE
Confidence 56777776 4679999 69999999999999999999999985432 112 3468999999999999
Q ss_pred EEEeecC
Q 015194 82 VFLSYDG 88 (411)
Q Consensus 82 l~l~y~~ 88 (411)
|+|....
T Consensus 76 I~l~~~~ 82 (114)
T 2kdi_A 76 LHLVLRL 82 (114)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 9997653
No 84
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=97.48 E-value=0.00025 Score=58.24 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=55.2
Q ss_pred CEEEEEcCCCc-eEE--EecCCCCcHHHHHHHH-HhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc
Q 015194 1 MLLRIRSRDGL-ERV--TVDGAHVTVAELKTII-QSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI 76 (411)
Q Consensus 1 MilRvRS~~G~-~Rv--~v~~p~~t~~~L~~kI-~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL 76 (411)
|-|-|++..|. +.+ +|+ |++|+++|+++| ++..++|++.|.|...- ..| ..+.+|+++||
T Consensus 20 m~I~VKtl~g~~~~i~v~v~-~~~TV~~lK~~I~~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~dy~I 83 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFS-PSDTILQIKQHLISEEKASHISEIKLLLKG--------------KVL-HDNLFLSDLKV 83 (98)
T ss_dssp EEEEEEECSSSCEEEEEEEC-TTCBHHHHHHHHHHTTSCSCGGGEEEEETT--------------EEE-CTTCBGGGSCC
T ss_pred EEEEEEcCCCCEEEEEEecC-CCChHHHHHHHHHHHhcCCChhhEEEEECC--------------EEC-cCcCCHHHcCc
Confidence 56889999884 455 677 699999999999 77779999998885421 112 34689999999
Q ss_pred -ccccEEEEee
Q 015194 77 -SHGSIVFLSY 86 (411)
Q Consensus 77 -kHGDml~l~y 86 (411)
+.|+.|.|--
T Consensus 84 ~~~g~ti~lmv 94 (98)
T 4a20_A 84 TPANSTITVMI 94 (98)
T ss_dssp BTTBCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 9999999864
No 85
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=97.48 E-value=0.0002 Score=60.06 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=57.0
Q ss_pred EEEEEcCCC-----------ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCC
Q 015194 2 LLRIRSRDG-----------LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRP 70 (411)
Q Consensus 2 ilRvRS~~G-----------~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~t 70 (411)
-|.|++++. ++.++|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~-~~~TV~~LK~~I~~~~gip~~~QrL~~~G--------------k~L-~D~~t 90 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEG--------------IFI-KDSNS 90 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEEC-SCSBTHHHHHHHHHHSSCCTTTEEEEETT--------------EEE-CTTSB
T ss_pred EEEEEcCCCccccccccCCeEEEEEEC-CCCCHHHHHHHHHHHHCCChHHEEEEECC--------------EEC-CCCCC
Confidence 467888752 6789999 69999999999999999999999995421 112 24689
Q ss_pred ccccccccccEEEEeec
Q 015194 71 LSSLNISHGSIVFLSYD 87 (411)
Q Consensus 71 l~~lGLkHGDml~l~y~ 87 (411)
|+++|+++|+.|+|...
T Consensus 91 L~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 91 LAYYNMASGAVIHLALK 107 (115)
T ss_dssp HHHHTCCSSCEEEEEEC
T ss_pred HHHCCCCCCCEEEEEEE
Confidence 99999999999999764
No 86
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.38 E-value=0.00049 Score=55.77 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=59.4
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..+.|. ++++++.|++++.++.+++++.+.+.-+- ..+ .++.|+.+||+..|
T Consensus 6 i~ikVk~~~g~~v~~~vk-~~t~l~kl~~~y~~~~gi~~~~~rf~FdG--------------~~l-~~~~Tp~dl~medg 69 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDG--------------QPI-NETDTPAQLEMEDE 69 (91)
T ss_dssp EEEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHTTCCSTTEEEEETT--------------EEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 57999999995 889999 69999999999999999999888875432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+-..
T Consensus 70 D~Idv~~~ 77 (91)
T 2io0_B 70 DTIDVFQQ 77 (91)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 99998654
No 87
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.36 E-value=0.00061 Score=55.28 Aligned_cols=76 Identities=20% Similarity=0.400 Sum_probs=55.5
Q ss_pred EEEEcC---CC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 3 LRIRSR---DG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 3 lRvRS~---~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|+|+++ +| ..-+.++ ++.|+++|+++|...+++|+..+.|+..... .|.. ...+.+..++|+..|+..
T Consensus 12 l~I~~~~~~~~~~~e~~l~-~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~----~~~~---~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 12 LKIKCSNQPERQILEKQLP-DSMTVQKVKGLLSRLLKVPVSELLLSYESSK----MPGR---EIELENDLQPLQFYSVEN 83 (97)
T ss_dssp EEEEESSCSSSCCEEEEEE-TTSBHHHHHHHHHTTTTCCTTTCEEEEECTT----SCSC---EEECCCSSSBSGGGTCCT
T ss_pred EEEEecCCCCCcEEEEECC-CCCCHHHHHHHHHHHHCCChhHeEEEEEcCC----CCce---eeccCCCcccHhhcCCCC
Confidence 456765 34 5556788 5999999999999999999999999543211 0110 022335679999999999
Q ss_pred ccEEEEee
Q 015194 79 GSIVFLSY 86 (411)
Q Consensus 79 GDml~l~y 86 (411)
||+|++.-
T Consensus 84 G~~I~V~d 91 (97)
T 1wjn_A 84 GDCLLVRW 91 (97)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEEe
Confidence 99999964
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.36 E-value=0.00043 Score=56.33 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=59.3
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..++|. +++++..|++++.++.+++++.+.|.-+- ..+ .++.|+.++++..|
T Consensus 8 i~ikVk~~~g~~i~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~FdG--------------~~l-~~~~Tp~dl~medg 71 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDG--------------QPI-NETDTPAQLEMEDE 71 (94)
T ss_dssp EEEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEEC-CCCHHHHHHHHHHHHhCCCcccEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 67999999995 788999 69999999999999999999888874432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+-..
T Consensus 72 D~Idv~~~ 79 (94)
T 2io1_B 72 DTIDVFQQ 79 (94)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEe
Confidence 99998654
No 89
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=97.35 E-value=0.0005 Score=55.00 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=49.0
Q ss_pred EEEecCCCCcHHHHHHHHHhhcCCCCCCceee-ccccccccCCCCcccccccCCCCCCCccccccccccEEEEe
Q 015194 13 RVTVDGAHVTVAELKTIIQSQLRIPVESQTLS-TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLS 85 (411)
Q Consensus 13 Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls-~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~ 85 (411)
=+.++ +++|+.+|+++|....|+|++.|.|. .+.+... . ..+...+++|++.|++.|..|+|-
T Consensus 18 E~r~~-~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~----~-----g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 18 EKRYG-LAQTIESIKENVFTHFATPPEYMQLQLIDDRGIT----I-----EKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEE-TTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCE----E-----ESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEcC-ccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCc----e-----eeEcCCCCCHHHCCCCCCCEEEEE
Confidence 46688 69999999999999999999999994 4332100 1 122356899999999999999984
No 90
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.32 E-value=0.00045 Score=61.57 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=56.6
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.|++.+| ++.++++ +++|+.+|+++|.+..++|++.|.|..+. ..| ..+.+|++.|+++|
T Consensus 97 ~~i~Vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g--------------~~L-~D~~tL~~y~i~~g 160 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 160 (172)
T ss_dssp EEEEEEESSCCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCCEEETT--------------EEC-CTTSBSGGGTCCTT
T ss_pred ccceeecccCcceeEEec-CCCCHHHHHHHHHHHhCCCceeEEEEECC--------------ccC-CCCCcHHHhCCCCC
Confidence 3456777666 5888999 69999999999999999999999986432 122 34789999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|..
T Consensus 161 ~tl~l~~ 167 (172)
T 3u30_A 161 STLHLVL 167 (172)
T ss_dssp CEEEECC
T ss_pred CEEEEEE
Confidence 9999864
No 91
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00063 Score=54.60 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=57.0
Q ss_pred CEEEEEcCCCc-eEEE--ecCCCCcHHHHHHHH-HhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc
Q 015194 1 MLLRIRSRDGL-ERVT--VDGAHVTVAELKTII-QSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI 76 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~--v~~p~~t~~~L~~kI-~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL 76 (411)
|-|-|++..|. +.|+ ++ |++|+.+|+++| ++..++|++.|.|...- ..| ..+.+|+++|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~-~~~TV~~lK~~I~~~~~gip~~~QrLi~~G--------------k~L-~D~~tL~~y~I 65 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFS-PSDTILQIKQHLISEEKASHISEIKLLLKG--------------KVL-HDNLFLSDLKV 65 (87)
T ss_dssp CEEEEEECSSSCEECCEECC-TTCBHHHHHHHHHHTTSCSSSTTEEEEETT--------------EEC-CTTCBHHHHCC
T ss_pred EEEEEEcCCCCEEEEEEcCC-CCCcHHHHHHHHHHHhcCCChHHEEEEECC--------------EEC-cCcCCHHHcCC
Confidence 67899999986 6665 55 599999999999 88889999999995421 122 34789999999
Q ss_pred -ccccEEEEeecC
Q 015194 77 -SHGSIVFLSYDG 88 (411)
Q Consensus 77 -kHGDml~l~y~~ 88 (411)
+.|..|.|.-.+
T Consensus 66 ~~~~stl~v~~~~ 78 (87)
T 2lxa_A 66 TPANSTITVMIKP 78 (87)
T ss_dssp CGGGCEEEEEECC
T ss_pred CCCCCEEEEEcCC
Confidence 699999986543
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=97.24 E-value=0.00096 Score=54.09 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=58.7
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..+.|. +++++..|++++.++.+++++.+.+..+- ..+ .++.|+.+|++..|
T Consensus 18 i~ikV~~~~g~~i~~~v~-~~t~l~kl~~~y~~~~gi~~~~~rf~fdG--------------~~l-~~~~Tp~dl~medg 81 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDG--------------QPI-NETDTPAQLEMEDE 81 (93)
T ss_dssp EEEEEECTTSCEEEEEEE-TTSCHHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTCCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEEc-cCCHHHHHHHHHHHHhCCCccceEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 57999999995 778999 69999999999999999999887775432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+...
T Consensus 82 D~Idv~~~ 89 (93)
T 2d07_B 82 DTIDVFQQ 89 (93)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEee
Confidence 99988643
No 93
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.23 E-value=0.00061 Score=66.91 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=58.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|.||+..| ++.|+|+ +++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+++||++|
T Consensus 234 MqI~VKtl~Gk~~~leV~-~s~TV~dLK~kI~~~~GIp~~~QRLi~~G--------------k~L-~D~~TLsdygI~~g 297 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLSDYNIQKE 297 (307)
T ss_dssp EEEEEECTTSCEEEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETT--------------EEC-CTTSBTGGGTCCTT
T ss_pred EEEEEEeCCCCEEEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEeCC--------------eec-CCCCCHHHcCCCCC
Confidence 5688999877 5779999 69999999999999999999999985432 112 34789999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|..
T Consensus 298 stL~Lvl 304 (307)
T 3ai5_A 298 STLHLVL 304 (307)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999863
No 94
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.18 E-value=0.0016 Score=51.60 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=54.4
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceee-ccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLS-TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls-~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-||||.|+|. ..-... +++|+++|++.|.. .+.+..++.|. ..|.+. +.. .+.++||.++||.++
T Consensus 9 ~i~iRlpdG~r~~~~F~-~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~----------l~~-~d~~~TL~e~gL~p~ 75 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFL-ASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRD----------VTQ-LDPNKSLLEVKLFPQ 75 (84)
T ss_dssp EEEEECTTSCEEEEEEE-TTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCB----------GGG-SCTTSBTTTTTCCSE
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCC----------CcC-CCCCCCHHHCCCCCC
Confidence 4899999996 455667 58999999999988 45666778884 345431 221 145789999999999
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|++.-
T Consensus 76 a~L~ve~ 82 (84)
T 3qx1_A 76 ETLFLEA 82 (84)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999964
No 95
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.18 E-value=0.0013 Score=54.57 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=59.0
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..+.|. +++++..|++++.++.+++++.+.|..+- ..+ .++.|+.+|++..|
T Consensus 25 I~IkVk~~~g~~i~~kVk-~~t~l~kL~~~y~ek~gi~~~~~rf~FdG--------------~~l-~~~~Tp~dl~medg 88 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIK-RHTPLSKLMKAYCERQGLSMRQIRFRFDG--------------QPI-NETDTPAQLEMEDE 88 (104)
T ss_dssp EEEEEECSSSCEEEEEEC-TTSCHHHHHHHHHHHHTCCTTTSCEESSS--------------SBC-CTTSCTTTTTCCTT
T ss_pred EEEEEECCCCCEEEEEEc-CCChHHHHHHHHHHHhCCCcceEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 57999999995 789999 69999999999999999999887775432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+...
T Consensus 89 D~Idv~~~ 96 (104)
T 1wz0_A 89 DTIDVFQQ 96 (104)
T ss_dssp EEEEECCC
T ss_pred CEEEEEEe
Confidence 99998643
No 96
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.0015 Score=55.37 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=54.7
Q ss_pred EEEE-cCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 3 LRIR-SRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 3 lRvR-S~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
+.|. ++.| .+-|+++ |+.|+++|++++++.+++|++.+.|..+- ..|+ .+.||.++|++.|.
T Consensus 18 vkv~l~~~~~k~tv~v~-~d~TV~dLKe~ls~~~~iP~e~qrLIy~G--------------KiLK-D~eTL~~~gIk~g~ 81 (118)
T 2daf_A 18 VKVVLIPVGQEIVIPFK-VDTILKYLKDHFSHLLGIPHSVLQIRYSG--------------KILK-NNETLVQHGVKPQE 81 (118)
T ss_dssp EEEEETTTCCEEEEEEC-SSSCSHHHHHHHHHHHTCCTTTEEEEETT--------------EEEC-SSCCHHHHSCCSSC
T ss_pred EEEEEcCCCcEEEEEeC-CCCcHHHHHHHHHhhhCCChHHEEEEECC--------------eEcC-CcchHHHcCCCCCC
Confidence 4444 5555 7889999 69999999999999999999998884321 2222 36899999999999
Q ss_pred EEEEeec
Q 015194 81 IVFLSYD 87 (411)
Q Consensus 81 ml~l~y~ 87 (411)
.|+|.-.
T Consensus 82 TIhLvi~ 88 (118)
T 2daf_A 82 IVQVEIF 88 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999644
No 97
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.88 E-value=0.0058 Score=50.91 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=59.1
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeec-cccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLST-NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~-~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-||||-+||. ..-+.. +++|+++|++.|....+.+...+.|.. -|.+. +.. .+.++||.++||.+.
T Consensus 15 ~IqIRlpdG~rl~~rF~-~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~----------l~~-~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFP-SDAPLEEARQFAAQTVGNTYGNFSLATMFPRRE----------FTR-EDYKRRLLDLELAPS 82 (109)
T ss_dssp EEEEECSSSCEEEEEEC-TTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCB----------CCT-TTTTSBTGGGTCSSE
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhccCCCCCceEEEcCCCCcC----------Ccc-cccCCCHHHCCCCCc
Confidence 4899999997 455668 599999999999999877767788854 35431 121 134789999999999
Q ss_pred cEEEEeecCcc
Q 015194 80 SIVFLSYDGER 90 (411)
Q Consensus 80 Dml~l~y~~~~ 90 (411)
..|++......
T Consensus 83 a~L~v~~~~~~ 93 (109)
T 2dzk_A 83 ASVVLLPAGRP 93 (109)
T ss_dssp EEEEEECCSSC
T ss_pred eEEEEEECcCC
Confidence 99999876543
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=96.77 E-value=0.0023 Score=53.67 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=59.3
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++.+|. ..+.|. +++++..|++++.++.+++++.+.|..+- ..+ .++.|+.+|++..|
T Consensus 27 I~IkVk~~~g~~i~fkVk-~~t~l~kL~~ay~ek~gi~~~~~rfiFdG--------------~~L-~~~~Tp~dl~mEDg 90 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIK-SRTALKKLIDTYCKKQGISRNSVRFLFDG--------------TPI-DETKTPEELGMEDD 90 (110)
T ss_dssp EEEEEEETTSCCEEEEEC-TTSSHHHHHHHHHHHHTCCSSSCEEESSS--------------CBC-CSSSHHHHHHCSSE
T ss_pred EEEEEECCCCCEEEEEEC-CCChHHHHHHHHHHHhCCCcccEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 57999999985 789999 69999999999999999999988875432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+...
T Consensus 91 D~Idv~~~ 98 (110)
T 2k8h_A 91 DVIDAMVE 98 (110)
T ss_dssp EEEEEECC
T ss_pred CEEEEEEc
Confidence 99998654
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=96.64 E-value=0.0039 Score=51.93 Aligned_cols=70 Identities=9% Similarity=0.141 Sum_probs=57.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|.|+|++ +| ...+.+. +++++..|++++.++.+++++.+.+.-+- ..+ .++.|..+||+..|
T Consensus 32 I~IkV~~-~g~~i~fkIk-~tt~l~kL~~ay~ek~gi~~~~~rF~FdG--------------~rl-~~~~Tp~dl~medg 94 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDG--------------IRI-QADQTPEDLDMEDN 94 (106)
T ss_dssp EEEEEEC-SSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGEEEEETT--------------EEC-CTTCCTTTTTCCTT
T ss_pred EEEEEec-CCcEEEEEeC-CCCHHHHHHHHHHHHhCCCcccEEEEECC--------------eEc-CCCCCHHHcCCCCC
Confidence 5799999 88 5678899 59999999999999999998887774432 122 45789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|+|.+-..
T Consensus 95 D~Idv~~~ 102 (106)
T 2eke_C 95 DIIEAHRE 102 (106)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEee
Confidence 99988543
No 100
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.58 E-value=0.0076 Score=50.95 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=51.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhc------C--CCCCCceeeccccccccCCCCcccccccCCCCCCCc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQL------R--IPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPL 71 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l------~--~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl 71 (411)
|-|+|++-.| ++-++|+ |++|+.+|+++|++.. + ++++.+.|...- ..| ..+.||
T Consensus 17 m~I~vKtl~G~t~~lev~-~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~G--------------K~L-eD~~TL 80 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFS-PNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG--------------RFL-HGNVTL 80 (116)
T ss_dssp EEEEEECSSSCEEEEEEC-TTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETT--------------EEE-CSSCBT
T ss_pred EEEEEEeCCCCEEEEEEC-CcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECC--------------cCC-CCCCcH
Confidence 6789998665 5778889 6999999999999953 3 457778884321 122 347899
Q ss_pred cccccccccE--EEEeec
Q 015194 72 SSLNISHGSI--VFLSYD 87 (411)
Q Consensus 72 ~~lGLkHGDm--l~l~y~ 87 (411)
++.||+.|+. |+|...
T Consensus 81 ~~y~I~~~~~~tlhLvlr 98 (116)
T 1wgh_A 81 GALKLPFGKTTVMHLVAR 98 (116)
T ss_dssp TTTTCCSSCEEEEEEEEC
T ss_pred HHcCCCCCCceEEEEEcc
Confidence 9999988865 555443
No 101
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.58 E-value=0.0047 Score=53.00 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=51.6
Q ss_pred CEEEEEcCCCc-e-EEEecCCCCcHHHHHHHHHhhc-----CCCC--CCceeeccccccccCCCCcccccccCCCCCCCc
Q 015194 1 MLLRIRSRDGL-E-RVTVDGAHVTVAELKTIIQSQL-----RIPV--ESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPL 71 (411)
Q Consensus 1 MilRvRS~~G~-~-Rv~v~~p~~t~~~L~~kI~~~l-----~~~~--~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl 71 (411)
|-|+||+.+|. + -++++ |++|+.+|+++|.+.. ++|+ +.+.|... | ..| ..+.||
T Consensus 17 ~~i~~kt~~G~~i~~l~v~-psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~----------G----K~L-eD~~TL 80 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFP-DATTVSALKETVISEWPREKENGPKTVKEVKLISA----------G----KVL-ENSKTV 80 (126)
T ss_dssp EEEEEEETTSCEEEEEEEC-TTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET----------T----EEC-CTTSBG
T ss_pred EEEEEEECCCCEEEeeecC-ccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC----------C----eEC-cCCCcH
Confidence 67999999994 4 48999 7999999999996654 4554 56666331 1 222 457899
Q ss_pred ccccccccc------EEEEeec
Q 015194 72 SSLNISHGS------IVFLSYD 87 (411)
Q Consensus 72 ~~lGLkHGD------ml~l~y~ 87 (411)
++.+|..|+ .++|...
T Consensus 81 sdy~I~~~~~~~~v~tmhlVlr 102 (126)
T 1se9_A 81 KDYRSPVSNLAGAVTTMHVIIQ 102 (126)
T ss_dssp GGGSCCTTSCTTCCEEEEEEEC
T ss_pred HHcCCCcCCccCCcEEEEEEec
Confidence 999999995 4666543
No 102
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=96.56 E-value=0.026 Score=48.97 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=77.8
Q ss_pred chhhhhHHHHHHHHhhccceeeeeeeeeeecCCcEEEEeEeCCCC-CCCcCceEEcCCchhHHHHHHHHHhcCCeEEEEE
Q 015194 134 RDCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEVNFIYEPPQ-QGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFI 212 (411)
Q Consensus 134 ~~~~~~fq~~~~~~l~~~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ-~~~~dg~~l~~d~~~e~~vd~iA~~lGL~~VG~I 212 (411)
....+.+...-+. ....--||+|.|++..+ ...|..+|..|. ..+++.+.+ |+.+..++.+-|...|++.|||+
T Consensus 6 ~~~l~~i~~ha~~--~~p~E~cGlL~G~~~~~-~~~v~~~~p~~n~~~~~~~f~~--dp~~~~~~~~~~~~~g~~ivG~~ 80 (146)
T 2kks_A 6 KKQMEEMLAHARQ--ALPNEACGLLGGRRDGD-DRWVERVYPLNNLDQSPEHFSM--DPREQLTAVKDMRKNGWVMLGNF 80 (146)
T ss_dssp HHHHHHHHHHHHH--HTTSCEEEEEEEEEETT-EEEEEEEECCCCCSCCSSSCCC--CHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHh--cCCcceEEEEEEEEcCC-CcEEEEEEECCCcCCCCceEEE--CHHHHHHHHHHHHHCCCEEEEEE
Confidence 3334444444443 24577899999999855 356667777663 455566543 45444566666778899999999
Q ss_pred EeecccCCCCceeecHHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeecc
Q 015194 213 FTQTIMQNKKDYTLSNREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMS 271 (411)
Q Consensus 213 fTdl~~~~~~~~fLSs~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS 271 (411)
=||+ ...-++|..++.++. . +.++-.+|+.. .++...+.||...
T Consensus 81 HSHP----~~~~~PS~~D~~~~~-----~--~~~~~lIvs~~----~~~~~~~~af~~~ 124 (146)
T 2kks_A 81 HSHP----ATPARPSAEDKRLAF-----D--PSLSYLIISLA----EPQKPVCKSFLIK 124 (146)
T ss_dssp EEES----SSCSSCCHHHHTTCC-----S--SSCEEEEEECS----CSSSCEEEEEEEC
T ss_pred eCCC----cCCCCCCHHHHHhhh-----c--CCCeEEEEEcc----CCCceEEEEEEEe
Confidence 9999 566789999987532 2 35566677632 1234568999874
No 103
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.56 E-value=0.0033 Score=62.02 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=56.3
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeec--cccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLST--NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~--~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-|.|.+...++-|+++ |++|+++|+++|.+..++|++.|.|.. ..+ ..+ ..+.+|+++||+.|
T Consensus 7 ~i~Vk~~g~~~~v~v~-~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~G-------------k~l-~D~~~L~~~~ik~g 71 (320)
T 3shq_A 7 VVIVKWSGKEYPVDLT-DQDTVEVLRHEIFRKTQVRPERQKLLNLKYKG-------------KTA-ADNVKISALELKPN 71 (320)
T ss_dssp EEEEEETTEEEEEEEE-TTSBHHHHHHHHHHHHCCCGGGCEETTCBSSS-------------SBC-CTTSBTTSSCCC--
T ss_pred EEEEEECCEEEEEEEC-CCCcHHHHHHHHHHHHCcCHHHeEEeecccCC-------------ccc-CccccHHHcCCCCC
Confidence 4788888888899999 699999999999999999999988853 111 112 24688999999999
Q ss_pred cEEEEeecC
Q 015194 80 SIVFLSYDG 88 (411)
Q Consensus 80 Dml~l~y~~ 88 (411)
..|.|-=..
T Consensus 72 ~~l~L~gs~ 80 (320)
T 3shq_A 72 FKLMMVGST 80 (320)
T ss_dssp CEEEEECCC
T ss_pred CEEEEEccc
Confidence 999986443
No 104
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.30 E-value=0.015 Score=48.38 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=54.9
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceee-ccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLS-TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls-~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-|+||-++|. ..-... .++|+++|++.|... +.....+.|. ..|.+. +. .+.++||.++||.+.
T Consensus 25 ~IqiRlpdG~r~~rrF~-~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~----------l~--~d~~~TL~e~gL~p~ 90 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFF-KSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRA----------LE--VEGGSSLEDIGITVD 90 (109)
T ss_dssp EEEEECTTSCEEEEEEE-SSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCB----------CC--CCSSCBHHHHTCSSC
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcC----------CC--CCCCCCHHHcCCCCC
Confidence 4899999996 344567 489999999999965 4455667774 445431 11 135799999999999
Q ss_pred cEEEEeecCcc
Q 015194 80 SIVFLSYDGER 90 (411)
Q Consensus 80 Dml~l~y~~~~ 90 (411)
.+|++......
T Consensus 91 a~L~Ve~~~~~ 101 (109)
T 2cr5_A 91 TVLNVEEKEQS 101 (109)
T ss_dssp EEEEEEECCCC
T ss_pred eEEEEEeCCCC
Confidence 99999865443
No 105
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.23 E-value=0.0077 Score=60.50 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=55.6
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhh---cCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQ---LRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNI 76 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~---l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGL 76 (411)
|-|.||+..| ++.|+|+ +++|+.+|+++|.+. .+++++.+.|...- +.| ..+++|+++||
T Consensus 8 M~I~VKtl~Gk~~~leV~-~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~G--------------K~L-~D~~tL~dygI 71 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRME-PDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG--------------KIL-SDDVPIRDYRI 71 (368)
T ss_dssp CCEEEEETTTEEEEECCC-TTCBHHHHHHHHHHHTCSSSCCSTEEEEESSS--------------SEE-CSSSBTTTTCC
T ss_pred EEEEEEeCCCCEEEEEeC-CCChHHHHHHHHHHHhCcCCCChhheEEEECC--------------eec-CCcCCHHHcCC
Confidence 6789999866 5679999 699999999999994 56899988885421 122 24689999999
Q ss_pred ccccEE-EEeecC
Q 015194 77 SHGSIV-FLSYDG 88 (411)
Q Consensus 77 kHGDml-~l~y~~ 88 (411)
++|+.| ++....
T Consensus 72 ~~gstIv~lv~k~ 84 (368)
T 1oqy_A 72 DEKNFVVVMVTKT 84 (368)
T ss_dssp CTTSCEEEEEECC
T ss_pred CCCCEEEEEEecC
Confidence 999987 665443
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=96.19 E-value=0.01 Score=50.75 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=50.5
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhc------CC--CCCCceeeccccccccCCCCcccccccCCCCCCCc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQL------RI--PVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPL 71 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l------~~--~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl 71 (411)
|-|+|++..| ++-++|+ |++|+++|+++|++.. ++ +++.+.|...- ..| ..+.||
T Consensus 18 m~I~vktl~G~~~~lev~-~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~G--------------K~L-eD~~TL 81 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFS-PNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG--------------RFL-HGNVTL 81 (125)
T ss_dssp EEEEEECTTSCEEEEEEC-TTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSS--------------SEE-ESSCBT
T ss_pred EEEEEEeCCCCEEEEEeC-CccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECC--------------cCC-CCCCcH
Confidence 6789998776 5667889 6999999999999954 34 35667774321 112 247899
Q ss_pred cccccccccE--EEEeec
Q 015194 72 SSLNISHGSI--VFLSYD 87 (411)
Q Consensus 72 ~~lGLkHGDm--l~l~y~ 87 (411)
++.||+.|+. |+|...
T Consensus 82 ~~y~I~~~~~~tlhlv~r 99 (125)
T 2gow_A 82 GALKLPFGKTTVMHLVAR 99 (125)
T ss_dssp GGGCCCTTSEEEEEEEEC
T ss_pred HHcCCCCCCceEEEEEec
Confidence 9999998884 455443
No 107
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=96.18 E-value=0.037 Score=48.35 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=71.9
Q ss_pred cceeeeeeeeeeecCCcEEEEeEeCCCCC---CCcCceEEcCCchhHHHHHHHHHhcCCeEEEEEEeecccCCCCceeec
Q 015194 151 AVKRGGFMYGTVLEDKRVEVNFIYEPPQQ---GTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFIFTQTIMQNKKDYTLS 227 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~---~~~dg~~l~~d~~~e~~vd~iA~~lGL~~VG~IfTdl~~~~~~~~fLS 227 (411)
-.--||+|.|++.......|..+|.-|.. ...+.+.+ |+.+...+.+-+...|++.|||+=||+ ...-++|
T Consensus 20 p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~--dp~~~~~~~~~~~~~g~~ivG~yHSHP----~~~~~PS 93 (153)
T 2kcq_A 20 PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYEL--TADDYRAADAAAQEQGLDVVGVYHSHP----DHPARPS 93 (153)
T ss_dssp TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSC--CCCSHHHHHHHHHHHTCEEEEEEEECS----SSSSSCC
T ss_pred CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEE--CHHHHHHHHHHHHHCCCeEEEEEeCCC----CCCCCCC
Confidence 46689999999874445666666666654 34566665 333345666777788999999999999 5678999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccH
Q 015194 228 NREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSD 272 (411)
Q Consensus 228 s~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~ 272 (411)
..++.+| . .+.++-.+|+..- +....+.||..++
T Consensus 94 ~~D~~~~----~---~~~~~~lIvs~~~----~~~~~~~af~~~~ 127 (153)
T 2kcq_A 94 ATDLEEA----T---FPGFTYVIVSVRD----GAPEALTAWALAP 127 (153)
T ss_dssp HHHHHTC----C---CTTSEEEEEEEET----TEEEEEEEEEECT
T ss_pred HHHHHhh----h---cCCCeEEEEECCC----CCccEEEEEEEeC
Confidence 9997543 1 1466777777421 1224689999854
No 108
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.64 E-value=0.025 Score=48.25 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=54.8
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeec-cccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLST-NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~-~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
.||||-|+|. ..-... +++|+++|++.|... +.+...+.|.. .|.+. |.. .+.++||.++||.+.
T Consensus 45 ~IqIRlPdG~rl~~rF~-~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~----------l~~-~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLP-EQAKLLALVKHVQSK-GYPNERFELLTNFPRRK----------LSH-LDYDITLQEAGLCPQ 111 (124)
T ss_dssp EEEEECTTSCEEEEEEE-TTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCE----------ETS-SCSSSCTTTTTCCSS
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcC----------Ccc-CCCCCCHHHCCCCCc
Confidence 4899999996 455677 599999999999887 66667788854 45431 211 135799999999998
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
..|++...
T Consensus 112 a~Liv~~~ 119 (124)
T 1wj4_A 112 ETVFVQES 119 (124)
T ss_dssp BCCEEEEC
T ss_pred eEEEEEEc
Confidence 88888643
No 109
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.61 E-value=0.03 Score=45.85 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=55.3
Q ss_pred EEEEEcCCCc--eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 2 LLRIRSRDGL--ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 2 ilRvRS~~G~--~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
-|+|++++|- .++.+. ++++++.|++...++.+++.....+.-+- ..+ .++.|..+||+..|
T Consensus 27 ~LkV~~~dg~~~v~fkIk-~~t~l~kLm~aY~~~~g~~~~~vrF~FDG--------------~rI-~~~~TP~dLdMEDg 90 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLS-RDSPLKTLMSHYEEAMGLSGRKLSFFFDG--------------TKL-SGRELPADLGMESG 90 (97)
T ss_dssp EEEEEESSSSCEEEEEEE-TTSCHHHHHHHHHHHTTCSSSCCEEEETT--------------EEC-CSCSCHHHHTCCTT
T ss_pred EEEEEcCCCCEEEEEEEC-CCChHHHHHHHHHHHHCCCcccEEEEECC--------------EEc-CCCCCHHHcCCCCC
Confidence 5899999994 689999 59999999999999999998877764432 112 46789999999999
Q ss_pred cEEEE
Q 015194 80 SIVFL 84 (411)
Q Consensus 80 Dml~l 84 (411)
|+|-+
T Consensus 91 D~IDv 95 (97)
T 2jxx_A 91 DLIEV 95 (97)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99976
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=95.59 E-value=0.037 Score=46.67 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=56.7
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
-|+|++.+|. ..+.+. +++++..|++...++.+++...+.+.-+- ..+ .++.|..+||+..||
T Consensus 42 ~LKV~~qdg~ev~fkIk-~tt~L~KLm~aY~er~Gl~~~~irFlFDG--------------~rI-~~~~TP~dL~MEDgD 105 (115)
T 3kyd_D 42 KLKVIGQDSSEIHFKVK-MTTHLKKLKESYCQRQGVPMNSLRFLFEG--------------QRI-ADNHTPKELGMEEED 105 (115)
T ss_dssp EEEEECTTSCEEEEEEE-TTSCTHHHHHHHHHHHTCCTTSEEEEETT--------------EEC-CTTCCTTTTTCCTTC
T ss_pred EEEEEcCCCCEEEEEEc-cCChHHHHHHHHHHHhCCChhhEEEEECC--------------eEC-CCCCCHHHcCCCCCC
Confidence 5899999987 578889 59999999999999999998887774432 112 457899999999999
Q ss_pred EEEEee
Q 015194 81 IVFLSY 86 (411)
Q Consensus 81 ml~l~y 86 (411)
+|-+..
T Consensus 106 ~IdV~~ 111 (115)
T 3kyd_D 106 VIEVYQ 111 (115)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998754
No 111
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=94.44 E-value=0.0069 Score=55.46 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|-||+.+| ++.++|+ |++|+.+|+++|.+..++|++.|.|...- ..| ..+.+|+ +|
T Consensus 1 MqI~VKtL~GktitLeV~-~sdTV~~LK~kI~~keGIP~~qQRLIf~G--------------K~L-eD~~TLs-----~~ 59 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLE-QGTSVLDLKSQISQDMGFEIDMMTLVNNG--------------FIA-PNTELVT-----DD 59 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEEC-CcChHHHHHHHHHHHhCcChhHEEEEecC--------------eEC-CCCCccc-----CC
Confidence 7788998876 5679999 69999999999999999999999985421 112 2356666 78
Q ss_pred cEEEEee
Q 015194 80 SIVFLSY 86 (411)
Q Consensus 80 Dml~l~y 86 (411)
+.|+|..
T Consensus 60 STLhLvl 66 (189)
T 2xzm_9 60 VTYYLSL 66 (189)
T ss_dssp -------
T ss_pred CEEEEEE
Confidence 8888865
No 112
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.32 E-value=0.07 Score=45.53 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=47.8
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcC-CCCCCceee-ccccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLR-IPVESQTLS-TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~-~~~~~~~Ls-~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
-||||-+||. ..-... .++|+++|++.|..... .....+.|. ..|.+ .+.+.++||.++||.+
T Consensus 54 ~IqIRlpdG~rl~~rF~-~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk-------------~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFN-HSHRISDIRLFIVDARPAMAATSFVLMTTFPNK-------------ELADENQTLKEANLLN 119 (127)
T ss_dssp CEEEEETTTTEEEEECC-SSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTE-------------ECCSTTCBHHHHTCSS
T ss_pred EEEEECCCCCEEEEEeC-CCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCC-------------CCCCCCCcHHHCCCcC
Confidence 4899999996 455667 59999999999999764 445567774 44543 1223478999999998
Q ss_pred ccE
Q 015194 79 GSI 81 (411)
Q Consensus 79 GDm 81 (411)
.-+
T Consensus 120 sav 122 (127)
T 1s3s_G 120 AVI 122 (127)
T ss_dssp CEE
T ss_pred ceE
Confidence 533
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=94.22 E-value=0.081 Score=45.40 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=56.6
Q ss_pred EEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCCC-Cceeecccccc--------ccC------CCCcc----ccc
Q 015194 2 LLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLSTNQNLL--------LAK------SPSDL----LQF 61 (411)
Q Consensus 2 ilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls~~~~~~--------~~~------~p~~~----~~~ 61 (411)
.||||-+||+ +++.|+ .+.|+++++..|..++|++.. ..+|...+... ..+ .|..- +.+
T Consensus 13 ~LkV~llDg~~ktl~VD-~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVD-DSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTSCEEEEEEE-ECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCCCEEEEEeC-CCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 5899999995 578899 599999999999999998855 24453322100 000 00000 000
Q ss_pred c-----cCCCCCCCccccccccccEEEEeec
Q 015194 62 T-----DMANPDRPLSSLNISHGSIVFLSYD 87 (411)
Q Consensus 62 ~-----~l~~~~~tl~~lGLkHGDml~l~y~ 87 (411)
. ...++++||.+.|+..||.|.|.++
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 0 1225689999999999999999754
No 114
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.72 E-value=0.15 Score=41.09 Aligned_cols=74 Identities=7% Similarity=0.007 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-+=|..++| ..+|.|. |+.++.+++++.-++++++++...|..+.. . .+.+.+++-.||-+|
T Consensus 10 m~v~Vl~~n~rr~~VKvt-p~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k--------------~-lDLSlpfRlsgLpnn 73 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVT-PSTVLLQVLEDTCRRQDFNPSEYDLKFQRT--------------V-LDLSLQWRFANLPNN 73 (90)
T ss_dssp CCEEEECTTSCEEEECCC-TTSBHHHHHHHHHHHTTCCGGGCEEEETTE--------------E-ESSSCBHHHHCCCSS
T ss_pred cEEEEEcCCCcEEEEEEC-CCCCHHHHHHHHHHHhCCChhhCeEEeCCE--------------e-ccccceeEecCCCCC
Confidence 3466788898 8999999 799999999999999999988888843321 1 134678888999999
Q ss_pred cEEEEeecCcc
Q 015194 80 SIVFLSYDGER 90 (411)
Q Consensus 80 Dml~l~y~~~~ 90 (411)
..|.+.....+
T Consensus 74 AkLELv~~s~s 84 (90)
T 2al3_A 74 AKLEMVPVSRS 84 (90)
T ss_dssp CEEEEECSSSC
T ss_pred CEEEEEEccCC
Confidence 99999866543
No 115
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.13 E-value=0.44 Score=37.45 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred EcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCC-CceeeccccccccCCCCcccccccCCCCCCCccccccccccEEEE
Q 015194 6 RSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFL 84 (411)
Q Consensus 6 RS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l 84 (411)
-|+.|-.|+.+. ++.++.+|...-.++-+++.+ .+.|.-+- .. ..++.++.++++..||+|=+
T Consensus 16 ~~~~~dl~f~I~-~~t~v~kLi~ayc~~~~I~~~~~IrllFDG--------------dR-Ldp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 16 SSKSEDLRLSIP-VDFTVKDLIKRYCTEVKISFHERIRLEFEG--------------EW-LDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp ESSSCCEEEEEE-TTSBHHHHHHHHHHHHTCCCCTTCEEEETT--------------EE-CCTTSBGGGSSCCTTCEEEE
T ss_pred ccCCCCeEEEec-CCCCHHHHHHHHHHHcCCCcCceEEEEEcC--------------cc-cCccCChhhhCCcCCceeee
Confidence 467899999999 699999999999999999988 66664432 12 26789999999999999854
No 116
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.33 Score=44.62 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=56.5
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
-|||+.......+.+. +++++..|++...++.|++...+.+.-+- ..+ ..+.|..+||+..||+
T Consensus 31 ~LkV~~~g~~v~fkIk-~~t~l~kL~~ay~er~Gi~~~~~RF~FdG--------------~rI-~~~~TP~dL~MEdgD~ 94 (200)
T 3pge_A 31 NLKVSDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDG--------------IRI-QADQTPEDLDMEDNDI 94 (200)
T ss_dssp EEEEECSSCEEEEEEC-TTSCTHHHHHHHHHHHSSCGGGEEEEETT--------------EEC-CTTCCTTTTTCCTTEE
T ss_pred EEEEecCCCEEEEEEe-cCCHHHHHHHHHHHHhCCChhhEEEEECC--------------EEc-CCCCCHHHcCCCCCCE
Confidence 5889875566688899 59999999999999999999888874432 122 3578999999999999
Q ss_pred EEEeec
Q 015194 82 VFLSYD 87 (411)
Q Consensus 82 l~l~y~ 87 (411)
|.+...
T Consensus 95 Idv~~~ 100 (200)
T 3pge_A 95 IEAHRE 100 (200)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998754
No 117
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=91.47 E-value=0.41 Score=38.90 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=56.7
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
-|+||+..+..++.+-. ++.+.-|.+...++.|++++...+..+- ..+ .+..|-.+||+..||+
T Consensus 23 niKV~~~g~ev~FkIK~-tt~l~KL~~aYc~r~gv~~~sirFlfDG--------------~rI-~~~~TP~~L~meD~Di 86 (95)
T 2l76_A 23 PLKIRCRADLVRLPLRM-SEPLQSVVDHMATHLGVSPSRILLLFGE--------------TEL-SPTATPRTLKLGVADI 86 (95)
T ss_dssp EEEEECSSSEEEEEECS-SSCTHHHHHHHHHHHTSCGGGEEEEETT--------------EEC-CTTSCHHHHTCCSSCE
T ss_pred EEEEEcCCcEEEEEEec-CChHHHHHHHHHhhcCCChhhEEEEECC--------------cCC-CCCCCHhHcCCCCCCE
Confidence 58999999999999995 9999999999999999999877664432 122 4578999999999999
Q ss_pred EEEe
Q 015194 82 VFLS 85 (411)
Q Consensus 82 l~l~ 85 (411)
|-+.
T Consensus 87 ID~~ 90 (95)
T 2l76_A 87 IDCV 90 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9764
No 118
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=90.76 E-value=1 Score=40.23 Aligned_cols=131 Identities=11% Similarity=0.156 Sum_probs=74.4
Q ss_pred cceEEEechhh-hhHHHHHHHHh-hccceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCc---eEEcCCchhHHHHHHHH
Q 015194 127 CESVSFDRDCA-DAFQQYVNETL-AFAVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEV---LYILRDEEEEKLVDAIA 201 (411)
Q Consensus 127 ~d~vsf~~~~~-~~fq~~~~~~l-~~~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg---~~l~~d~~~e~~vd~iA 201 (411)
+..|.++.-.. +-...+.+... .....=+|.|.|+.. ...+.|.-.|+=|..++.+. +.+ |++......+.+
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~-~~~v~V~~~f~lp~~~~~~~~~~~~~--d~ey~~~m~~~~ 83 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQ-KKVLDVSNSFAVPFDEDDKDDSVWFL--DHDYLENMYGMF 83 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEES-SSEEEEEEEEEECEEECSSCTTSEEE--CHHHHHHHHHHH
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEc-CCEEEEEEEEEeCCcccCCCcchhhc--CHHHHHHHHHHH
Confidence 45566665432 22222233210 245677999999986 45788887788787765442 333 222222233334
Q ss_pred H--hcCCeEEEEEEeecccCCCCceeecHHHHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEeeccHH
Q 015194 202 A--GLGMKKVGFIFTQTIMQNKKDYTLSNREVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQMSDM 273 (411)
Q Consensus 202 ~--~lGL~~VG~IfTdl~~~~~~~~fLSs~Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQvS~q 273 (411)
+ .-++..|||=-|++.. |...+..+..+|... +.+|-+++.... ..+.+.+.||+.+..
T Consensus 84 ~~v~~~~~iVGWY~s~~~~--------s~~d~~i~~~~~~~~--~~~v~Livd~~~---~~~~l~i~ay~~~~~ 144 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKL--------HKNDIAINELMKRYC--PNSVLVIIDVKP---KDLGLPTEAYISVEE 144 (187)
T ss_dssp HTTSSSCEEEEEEECCSSC--------CTTHHHHHHHHTTTC--TTCEEEEECCCT---TC-CCSEEEEEEEEE
T ss_pred HHhCCCCCEEEEEcCCCcC--------CcccHHHHHHHHhcC--CCCEEEEECCCC---CCCCcCeEEEEEech
Confidence 4 2489999998887722 333343455566443 466766776432 123488999987644
No 119
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.55 Score=43.09 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=56.0
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
-|+|+.......+.|. +++++..|++...++.+++...+.+.-+- ..+ .++.|..+|++..||+
T Consensus 59 nLKVk~dG~eV~FKIK-rtTpL~KLmeAYcERqGL~~~sIRFLFDG--------------qRI-~~ddTPeDLdMEDGDt 122 (207)
T 3tix_A 59 NLKVSDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLTFLYDG--------------IEI-QADQTPEDLDMEDNDI 122 (207)
T ss_dssp EEEEECSSCEEEEEEE-TTSCTHHHHHHHHHHTTCCGGGSCEEETT--------------EEC-CSSCCTTTTTCCTTEE
T ss_pred EEEEecCCCEEEEEEc-cCChHHHHHHHHHHHhCCCcccEEEEECC--------------eec-CCCCCHHHcCCCCCCE
Confidence 5788875666788899 59999999999999999998877774432 112 3578999999999999
Q ss_pred EEEeec
Q 015194 82 VFLSYD 87 (411)
Q Consensus 82 l~l~y~ 87 (411)
|.+...
T Consensus 123 IDV~le 128 (207)
T 3tix_A 123 IEAHRE 128 (207)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 998644
No 120
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=86.54 E-value=0.88 Score=38.83 Aligned_cols=59 Identities=31% Similarity=0.523 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHhhcCCCCCCceeec--cccccccCCCCcccccccCCCCCCCccccccccccEEEEeec
Q 015194 20 HVTVAELKTIIQSQLRIPVESQTLST--NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYD 87 (411)
Q Consensus 20 ~~t~~~L~~kI~~~l~~~~~~~~Ls~--~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~y~ 87 (411)
..|+++|.+.+..+++.+. .+++++ +.+.. . .|- |.+ +-.++|.+||++.|..|.+.=+
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLL-y-D~D----fDD--nl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLL-F-DYD----FED--LNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEE-E-ETT----BCT--TTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeE-e-CCC----ccc--cccCcHHHcCcCCCcEEEEEcc
Confidence 4699999999999999874 566663 22211 0 011 233 2368999999999999999844
No 121
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.73 E-value=1.2 Score=41.37 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=50.5
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCC-Cceeec--cccccccCCCCcccccccCCCCCCCccccccccccEEEEeecC
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLST--NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDG 88 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls~--~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~y~~ 88 (411)
..+.+.. .+|+.+|++++.+.|+++.+ ...|.. +.+. +..|.+.+.||.+++|..|+.|.+....
T Consensus 154 ~~~~~Sk-~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~-----------~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSK-ADTIATIEKEMRKLFNIPAERETRLWNKYMSNT-----------YEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECT-TCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSS-----------CEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecc-cCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCC-----------HhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 3455684 99999999999999999987 578833 2221 1334456799999999999999998875
Q ss_pred c
Q 015194 89 E 89 (411)
Q Consensus 89 ~ 89 (411)
+
T Consensus 222 ~ 222 (231)
T 3jyu_A 222 E 222 (231)
T ss_dssp T
T ss_pred C
Confidence 3
No 122
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=84.09 E-value=1.2 Score=40.94 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=50.5
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCC-Cceeec--cccccccCCCCcccccccCCCCCCCccccccccccEEEEeecC
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLST--NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDG 88 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls~--~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~y~~ 88 (411)
..+.++. .+|+.+|++++.+.|+++.+ ...|-. ..+. +..|.+.+.||.+++|..|++|.+.+..
T Consensus 142 ~~~~~Sk-~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~-----------~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSK-ADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNT-----------FEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECT-TSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTE-----------EEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcc-cchHHHHHHHHHHHhCCCCCCceEEEEecCCCC-----------eeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4577785 99999999999999999987 577732 2221 1333355789999999999999998875
No 123
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.69 E-value=2.1 Score=33.88 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=38.0
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceee-ccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLS-TNQ 47 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls-~~~ 47 (411)
|.|.|+-.+ |.=|.|+ +..++++|.++|.++|+++++...|| .++
T Consensus 6 ~~VKV~~~~-tvairvp-~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYKY-TVVMKTQ-PGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESSS-EEEEEEC-TTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEEE-EEEEECC-CCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 467888884 8889999 69999999999999999998888884 444
No 124
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=80.31 E-value=1 Score=36.77 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=41.2
Q ss_pred ceEEEecCCCCcHHHHHHHHHhh--cCCCCCCceee---ccccccccCCCCcccccccCCCCCCCccccccccccEEEEe
Q 015194 11 LERVTVDGAHVTVAELKTIIQSQ--LRIPVESQTLS---TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLS 85 (411)
Q Consensus 11 ~~Rv~v~~p~~t~~~L~~kI~~~--l~~~~~~~~Ls---~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~ 85 (411)
...|+++ |+.|+++|++.+.+. +.+..-+.+-. .+.+.+...-|.=++. +. .+-+++|.+||+..||.|.++
T Consensus 6 ~~~l~v~-~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~-Tr-~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFS-PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEER-TR-PNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECC-TTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHH-HH-HHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEEC-CchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHH-hH-hhhhCCHHHhCCCCCCEEEEE
Confidence 4569999 699999999999984 33332222111 0122222111110000 10 012588999999999999985
No 125
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=79.25 E-value=1.6 Score=35.40 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=29.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHhhcCCCCCCcee
Q 015194 11 LERVTVDGAHVTVAELKTIIQSQLRIPVESQTL 43 (411)
Q Consensus 11 ~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~L 43 (411)
.+++.+. |++|+..++++|.++.|++++.|.|
T Consensus 25 ~h~v~I~-~~etv~~~ke~V~eqTgIp~~~Q~L 56 (94)
T 4efo_A 25 AHKIYIH-SYNTATIFHELVYKQTKIISSNQEL 56 (94)
T ss_dssp EEEEEEE-TTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEec-cchHHHHHHHHHHHHhCCCHHHHHH
Confidence 5789999 7999999999999999999998887
No 126
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=79.23 E-value=4.4 Score=34.84 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=59.7
Q ss_pred cceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHh-cCCeEEEEEEeecccCCCCceeecHH
Q 015194 151 AVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAG-LGMKKVGFIFTQTIMQNKKDYTLSNR 229 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~-lGL~~VG~IfTdl~~~~~~~~fLSs~ 229 (411)
...=+|.|.|+.. ...+.|.--|+=|.+++.+.+.+..+.. ++..+..-+- -.+..|||=-|+. .+++.
T Consensus 32 ~~~V~G~LLG~~~-~~~veV~nsF~~p~~~~~~~~~~d~~y~-~~m~~~~k~v~~~e~iVGWY~s~~--------~~~~~ 101 (141)
T 4e0q_A 32 PRQVYGALIGKQK-GRNIEIMNSFELKTDVIGDETVINKDYY-NKKEQQYKQVFSDLDFIGWYTTGD--------NPTAD 101 (141)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEEEEECCEEEETTEEEECHHHH-HHHHHHHHHHSTTCEEEEEEEEEC-------------
T ss_pred CcEEEEEEEEEEe-CCEEEEEEEEEecccCCCCceeecHHHH-HHHHHHHHHhCCCccEEEEEeCCC--------CCCcc
Confidence 3567999999974 5789999999999987766565433222 2344444332 3699999987765 24554
Q ss_pred HHHHHHHHHHhcCCCceEEEEEEeeecCCCCcceeEEEee
Q 015194 230 EVLQAVEFHAECNMEEWVTAVVKLEVSEEGSAAIHFEAFQ 269 (411)
Q Consensus 230 Eii~aa~~Q~~~~~skfvT~vvt~~~~~d~~~~I~~eayQ 269 (411)
.+..-..+|...+ +-|-+++- ......|.+.+.||.
T Consensus 102 d~~i~~~~~~~~~--~pV~L~~D--p~~~~~g~Lp~~ay~ 137 (141)
T 4e0q_A 102 DIKIQRQIAAINE--CPIMLQLN--PLSRSVDHLPLKLFE 137 (141)
T ss_dssp --CHHHHHHHTTC--CCEEEEES--CSCCCCTTHHHHHHC
T ss_pred hHHHHHHHHHHCC--CCEEEEEC--CCccCCCeEEEEEEE
Confidence 4444455554443 33444443 333233456666663
No 127
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=77.57 E-value=4.7 Score=38.06 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=49.1
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCC-Cceeec-cccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLST-NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls~-~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
|-+||.-.||+..++++ +++|..+|+++|.+.+++... .+.|.. +++. + ....++++++.+.+.+.
T Consensus 2 i~~~V~l~d~~~~~~v~-~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~--------~---~~wLd~~~~l~~q~~~~ 69 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQ-PNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKG--------F---STWLKLNKKVTAQDVRK 69 (294)
T ss_dssp EEEEEEETTEEEEEEEC-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTS--------C---EEECCSSSBGGGSCBCC
T ss_pred EEEEEEECCceEEEEEC-CCCcHHHHHHHHHHHcCCCCcceeEEEEECCCC--------c---eeecccccCHHhhccCC
Confidence 46899999999999999 699999999999999997653 477742 3321 0 11224567777766554
Q ss_pred ccE
Q 015194 79 GSI 81 (411)
Q Consensus 79 GDm 81 (411)
++-
T Consensus 70 ~~~ 72 (294)
T 1ef1_A 70 ESP 72 (294)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 128
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=75.62 E-value=6.8 Score=35.72 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=54.7
Q ss_pred EEEEEcCCCce-EEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 2 LLRIRSRDGLE-RVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 2 ilRvRS~~G~~-Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
-|+|++ +|.. .+.+. +++++..|++...++.+++.+.+.+.-+-.. + .++.|..+|++..||
T Consensus 23 ~ikv~~-~~~~v~~~i~-~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~--------------i-~~~~Tpk~L~~ed~d 85 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR--------------I-QADQTPEDLDMEDND 85 (209)
T ss_dssp EEEEEC-SSCEEEEEEE-TTSCTHHHHHHHHHHHTCCGGGCEEEETTEE--------------C-CTTCCTTTTTCCTTE
T ss_pred EEEEEc-CCCEEEEEEe-eCCHHHHHHHHHHHhhCCChheEEEEECCEe--------------c-cCCCChHHhhhcccc
Confidence 478998 5544 88899 5999999999999999999998888554321 1 346788999999999
Q ss_pred EEEEeec
Q 015194 81 IVFLSYD 87 (411)
Q Consensus 81 ml~l~y~ 87 (411)
.|-+...
T Consensus 86 ~I~~~~e 92 (209)
T 3uf8_A 86 IIEAHRE 92 (209)
T ss_dssp EEEEECS
T ss_pred cchhhcc
Confidence 9987644
No 129
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=71.21 E-value=6.9 Score=32.85 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=41.3
Q ss_pred EEEecCCCCcHHHHHHHHHhhc-CCCCC---------CceeeccccccccCCCCcccccccCCCCCCCccccccccccEE
Q 015194 13 RVTVDGAHVTVAELKTIIQSQL-RIPVE---------SQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIV 82 (411)
Q Consensus 13 Rv~v~~p~~t~~~L~~kI~~~l-~~~~~---------~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml 82 (411)
-+-++ |+-+|++|.+++..-. +.-+| .+.+++. +++ .+.+++|.+.||.|=|+|
T Consensus 41 ~~p~p-P~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~-------------pft--PD~~kSLaenG~~HKs~l 104 (119)
T 3u52_E 41 ALLVQ-PGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDE-------------PFT--PKADASLKEQGIDHKSML 104 (119)
T ss_dssp EEEEC-TTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTE-------------EEC--CCTTSBTTTTTCCTTEEE
T ss_pred eecCC-CCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCc-------------cCC--CChhhhHHHcCCCchheE
Confidence 46678 7999999999998764 33333 2232222 233 256899999999999999
Q ss_pred EEeec
Q 015194 83 FLSYD 87 (411)
Q Consensus 83 ~l~y~ 87 (411)
-+.-.
T Consensus 105 rf~TP 109 (119)
T 3u52_E 105 TVTTP 109 (119)
T ss_dssp EEECT
T ss_pred EEeCC
Confidence 98633
No 130
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=70.17 E-value=9.5 Score=36.37 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=48.8
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCC-CCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPV-ESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~-~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
+.+||.-.||+..++++ +++|..+|++.|...+++.. +.+.|....+. + ..-.+++++|.+.+.+.+
T Consensus 23 ~~~~V~lldg~~~~~v~-~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~--------~---~~wL~~~~~i~~q~~~~~ 90 (314)
T 1h4r_A 23 FTVRIVTMDAEMEFNCE-MKWKGKDLFDLVCRTLGLRETWFFGLQYTIKD--------T---VAWLKMDKKVLDHDVSKE 90 (314)
T ss_dssp EEEEEECSSCEEEEEEE-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEETT--------E---EEECCTTSBGGGSSCCCS
T ss_pred eEEEEEeCCceEEEEeC-CCCcHHHHHHHHHHHhCCCCCccceEEEEeCC--------c---CeeCCCccCHHHcCCCCC
Confidence 35899999999999999 69999999999999999774 34777443211 0 111245677777665544
Q ss_pred c
Q 015194 80 S 80 (411)
Q Consensus 80 D 80 (411)
+
T Consensus 91 ~ 91 (314)
T 1h4r_A 91 E 91 (314)
T ss_dssp S
T ss_pred C
Confidence 4
No 131
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.82 E-value=10 Score=39.94 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=51.7
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCC-CCceeec-cccccccCCCCcccccccCCCCCCCcccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPV-ESQTLST-NQNLLLAKSPSDLLQFTDMANPDRPLSSLNISH 78 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~-~~~~Ls~-~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkH 78 (411)
+.+||.-.||+..|+|+ +++|..+|++.|...+++.. +.|.|+. +++. . ....++++++.+.+++.
T Consensus 5 i~v~V~llDgt~e~~vd-~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~--------~---~~WLd~~k~i~~q~~~~ 72 (575)
T 2i1j_A 5 MNVRVTTMDAELEFAIQ-QTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKG--------D---LTWIKLYKKVMQQDVKK 72 (575)
T ss_dssp EEEEEECSSCEEEEEEE-TTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTS--------C---EEECCTTSBGGGSCBCC
T ss_pred EEEEEEeCCCeEEEEEC-CCCCHHHHHHHHHHHcCCCCccceeEEEEecCc--------c---hhHhhccccHHHhcccC
Confidence 46899999999999999 69999999999999999864 3577743 3321 0 11235677888776665
Q ss_pred ccEEEE
Q 015194 79 GSIVFL 84 (411)
Q Consensus 79 GDml~l 84 (411)
+.-+.|
T Consensus 73 ~~~~~L 78 (575)
T 2i1j_A 73 ENPLQF 78 (575)
T ss_dssp CSSEEE
T ss_pred CCCeEE
Confidence 554333
No 132
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=67.09 E-value=12 Score=30.79 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=40.4
Q ss_pred cceeeeeeeeeeecCCcEEEEeEeCCCCCCCcCceEEcCCchhHHHHHHHHHhcCCeEEEEEEeecccCCCCceeecHHH
Q 015194 151 AVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFIFTQTIMQNKKDYTLSNRE 230 (411)
Q Consensus 151 ~~QR~G~LYG~Y~~~~~a~VeAIYEPPQ~~~~dg~~l~~d~~~e~~vd~iA~~lGL~~VG~IfTdl~~~~~~~~fLSs~E 230 (411)
-.--||+|.|+.. +|..+|.-|........... .+ ...-|++.|||.=||+ ...-+.|..+
T Consensus 23 P~E~cGlL~g~~~-----~v~~~~~~p~~~~~~~~~f~--------~~--~~~~~~~ivG~~HSHP----~~~~~PS~~D 83 (124)
T 1oi0_A 23 PDEFIALLSGSKD-----VMDELIFLPFVSGSVSAVIH--------LD--MLPIGMKVFGTVHSHP----SPSCRPSEED 83 (124)
T ss_dssp TSCCEEEEEESTT-----EECEEEECCCCC-----------------------CCCEEEEEEEEES----SSCCSCCHHH
T ss_pred CCeeEEEEecccC-----EEEEEEECCCCCCCcCceee--------ee--eccCCCEEEEEEEECc----CCCCccCHHH
Confidence 3567999999963 44444444454442211110 00 1126899999999999 6678999999
Q ss_pred HHHHH
Q 015194 231 VLQAV 235 (411)
Q Consensus 231 ii~aa 235 (411)
+.+++
T Consensus 84 ~~~~~ 88 (124)
T 1oi0_A 84 LSLFT 88 (124)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98876
No 133
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=65.21 E-value=1.3 Score=41.13 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred CEEEEEcCCC-ceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccc
Q 015194 1 MLLRIRSRDG-LERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG 79 (411)
Q Consensus 1 MilRvRS~~G-~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG 79 (411)
|-|+| +.+| ...+.+. +++++..|++...++.+++...+.+.-+- ..+ .++.|..+||+..|
T Consensus 22 InLKV-~qdGseV~FKIK-rtTpL~KLM~AYcERqGLs~~siRFLFDG--------------qRI-~dddTPadL~MEDG 84 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDG--------------IRI-QADQTPEDLDMEDN 84 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEc-cCChHHHHHHHHHHHhCCCccceEEEECC--------------Eec-CCCCCHHHcCCCCC
Confidence 45677 4444 4456778 59999999999999999998877764331 112 35789999999999
Q ss_pred cEEEEeec
Q 015194 80 SIVFLSYD 87 (411)
Q Consensus 80 Dml~l~y~ 87 (411)
|.|.+...
T Consensus 85 DtIDV~le 92 (227)
T 3v7o_A 85 DIIEAHRE 92 (227)
T ss_dssp --------
T ss_pred CEEEEEec
Confidence 99987643
No 134
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=63.49 E-value=1.5 Score=43.78 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
-|+|++......+.+. +++++..|++...++.+++.+.+.+.-+- ..+ .++.|..+||+..||.
T Consensus 23 ~LKV~~~g~~v~FkIk-~~t~l~kLm~aY~~r~G~~~~~~rFlFdG--------------~rI-~~~~TP~~L~MEDgD~ 86 (360)
T 3ix6_A 23 NLKVSDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDG--------------IRI-QADQTPEDLDMEDNDI 86 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCcEEEEEEe-cCChHHHHHHHHHHHhCCCcceEEEEECC--------------eEC-CCCCChHHcCCCccch
Confidence 4788885456677888 59999999999999999998877764331 112 3578999999999999
Q ss_pred EEEeec
Q 015194 82 VFLSYD 87 (411)
Q Consensus 82 l~l~y~ 87 (411)
|-+..+
T Consensus 87 Idv~~~ 92 (360)
T 3ix6_A 87 IEAHRE 92 (360)
T ss_dssp ------
T ss_pred hhhhhc
Confidence 987643
No 135
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=60.62 E-value=15 Score=28.67 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=44.7
Q ss_pred cCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCC---cee-eccccccccCCCCcccccccCCCCCCCccccccccccEE
Q 015194 7 SRDGLERVTVDGAHVTVAELKTIIQSQLRIPVES---QTL-STNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIV 82 (411)
Q Consensus 7 S~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~---~~L-s~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml 82 (411)
...+++=+.++. .=|+..|++.+.+.++++... ..+ -.+++ .+...+..|++.|+++||.|
T Consensus 14 y~~~~~DLRIP~-~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~--------------~~L~~~~~L~d~~ItnGD~L 78 (81)
T 2bps_A 14 YNGSVFDLRLSD-YHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKD--------------KVFSGECKLSDCGITNGDRL 78 (81)
T ss_dssp TTCCEEEEEEET-TSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGT--------------EEEETTSBTGGGTCCTTCEE
T ss_pred cCCceEEEECCC-chhHHHHHHHHHHHhCCCcCCCCCCEEEEecCC--------------EEEcCCCEEeeCCcCCCCEE
Confidence 356778888885 789999999999999877532 222 11111 11245788999999999998
Q ss_pred EE
Q 015194 83 FL 84 (411)
Q Consensus 83 ~l 84 (411)
-+
T Consensus 79 ei 80 (81)
T 2bps_A 79 EI 80 (81)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 136
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=57.63 E-value=2.2 Score=42.49 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccE
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSI 81 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDm 81 (411)
.|+|++.....-+.+. ++++|..|++...++.+++...+.+.-+- ..+ .++.|..+||+..||+
T Consensus 32 ~lkv~~~~~~~~~~i~-~~~~~~~l~~~y~~~~g~~~~~~~f~f~G--------------~~i-~~~~Tp~~l~med~d~ 95 (389)
T 4da1_A 32 NLKVSDGSSEIFFKIK-KTTPLRRLMEAFAKRQGKEMDSLRFLYDG--------------IRI-QADQAPEDLDMEDNDI 95 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCcEEEEEEC-CCChHHHHHHHHHHHhCCCcceEEEEECC--------------EEc-CCCCCHHHcCCCCCCE
Confidence 4788885455568888 59999999999999999998887774431 112 3578999999999999
Q ss_pred EEEeec
Q 015194 82 VFLSYD 87 (411)
Q Consensus 82 l~l~y~ 87 (411)
|-+..+
T Consensus 96 i~~~~~ 101 (389)
T 4da1_A 96 IEAHRE 101 (389)
T ss_dssp ------
T ss_pred eeeeec
Confidence 987543
No 137
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=56.61 E-value=28 Score=33.99 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=49.2
Q ss_pred CEEEEEcCCCceE-EEecCCCCcHHHHHHHHHhhcCCCC-CCceeecc-ccccccCCCCcccccccCCCCCCCccccccc
Q 015194 1 MLLRIRSRDGLER-VTVDGAHVTVAELKTIIQSQLRIPV-ESQTLSTN-QNLLLAKSPSDLLQFTDMANPDRPLSSLNIS 77 (411)
Q Consensus 1 MilRvRS~~G~~R-v~v~~p~~t~~~L~~kI~~~l~~~~-~~~~Ls~~-~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLk 77 (411)
+.+||+-+||+.+ ++++ +++|..+|.++|.+++++.. +.+.|+.. +... ..+ ...-.++++++.+.|..
T Consensus 86 ~~~~V~l~dg~~~~~~vd-~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~----~~~---~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVD-DSKTVTDMLMTICARIGITNHDEYSLVRELMEEK----KDD---ELNWLDHGRTLREQGVE 157 (371)
T ss_dssp EEEEEECTTSCEEEEEEE-TTSBHHHHHHHHHHHTTCSCGGGEEEECCC-----------------CCCTTSBTGGGTCC
T ss_pred eEEEEECcCCCEEEEEEC-CCCCHHHHHHHHHHHcCCCCccccEEEEEecccc----cch---HHHHHhcCchhHhhCCC
Confidence 3589999999985 9999 69999999999999999764 35777432 2110 000 01122456777776654
Q ss_pred cccEEEE
Q 015194 78 HGSIVFL 84 (411)
Q Consensus 78 HGDml~l 84 (411)
....+++
T Consensus 158 ~~~~l~f 164 (371)
T 3ivf_A 158 EHETLLL 164 (371)
T ss_dssp TTCEEEE
T ss_pred CCceEEE
Confidence 4455555
No 138
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=53.93 E-value=31 Score=33.66 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=53.5
Q ss_pred EEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCC----CCCCceeec---cccccccCCCCcccccccCCCCCCCcccc
Q 015194 2 LLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRI----PVESQTLST---NQNLLLAKSPSDLLQFTDMANPDRPLSSL 74 (411)
Q Consensus 2 ilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~----~~~~~~Ls~---~~~~~~~~~p~~~~~~~~l~~~~~tl~~l 74 (411)
-|||+-++=++.+..+ |+.|++++...|.++++- +.+.-.|.. +|.+ + .=+ .+++||...
T Consensus 5 ~~~~~~~~~~~~~~f~-~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~-------~----~Wl-~~~~~l~~y 71 (371)
T 3ivf_A 5 SLKISIGNVVKTMQFE-PSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK-------G----IWL-EAGKALDYY 71 (371)
T ss_dssp EEEEEETTEEEEEEEC-TTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGG-------C----EEC-CTTSBGGGG
T ss_pred EEEEEecceeEEEEEC-CCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCc-------C----Eec-cCCCCHHHh
Confidence 4677778778889999 799999999999999853 233344432 2221 0 112 457799999
Q ss_pred ccccccEEEEeecC
Q 015194 75 NISHGSIVFLSYDG 88 (411)
Q Consensus 75 GLkHGDml~l~y~~ 88 (411)
|+..|+.|......
T Consensus 72 ~~~~~~~l~~~~~~ 85 (371)
T 3ivf_A 72 MLRNGDTMEYRKKQ 85 (371)
T ss_dssp TCCTTCEEEEEECE
T ss_pred CCCCCceeeccCce
Confidence 99999999987544
No 139
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.94 E-value=32 Score=27.25 Aligned_cols=44 Identities=7% Similarity=0.090 Sum_probs=33.3
Q ss_pred EEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCC-CCcee-eccc
Q 015194 3 LRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPV-ESQTL-STNQ 47 (411)
Q Consensus 3 lRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~-~~~~L-s~~~ 47 (411)
|++.=.+=+.|+.++ ++-++.+|.+++.+.++++. +++++ +.|.
T Consensus 9 vK~~~~gdi~~~~v~-~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 9 VKAYYRGDIMITHFE-PSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEESSSCEEEEEEC-TTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEeCCeEEEEECC-CCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 334444447788899 69999999999999999875 45777 6654
No 140
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.31 E-value=17 Score=28.92 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=42.6
Q ss_pred EEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccEEEEe
Q 015194 14 VTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLS 85 (411)
Q Consensus 14 v~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~ 85 (411)
+.|. |.-++++|+..|-++-.++++...|-++... .+..+-+++|.++||+- ||+-
T Consensus 25 vRVS-P~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~------------~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 25 VRVS-PHASLQELAPIICSKCEFDPLHTLLLKDYQS------------QEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp EEEC-SSSCTTTHHHHHHHHTTCCTTSEEEESCSSC------------CCBCCTTSCHHHHTCSE---EEEE
T ss_pred EEeC-CCCcHHHHHHHHhhcccCChhhEEEecCCCC------------Ccccchhcchhhhhhhh---hhee
Confidence 4677 6999999999999999999888777655421 11234578999999996 7764
No 141
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.79 E-value=29 Score=28.17 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred EEEEEcCCCceE-EEecCCCCcHHHHHHHHHhhcCCCCC-Cceee-cccc
Q 015194 2 LLRIRSRDGLER-VTVDGAHVTVAELKTIIQSQLRIPVE-SQTLS-TNQN 48 (411)
Q Consensus 2 ilRvRS~~G~~R-v~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls-~~~~ 48 (411)
++||-+.||..+ |.|+ ++.|..++.+.+..+.....+ .++|+ ..|.
T Consensus 11 vvkvf~~Dgssksi~V~-~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~ 59 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVA-AGATARHVCEMLVQRAHALSDETWGLVECHPH 59 (100)
T ss_dssp EEEEEETTSCEEEEEEC-TTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT
T ss_pred EEEEEecCCCEEEEEEC-CCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 789999999876 6778 699999999999999976644 58874 3354
No 142
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=47.43 E-value=32 Score=27.34 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=40.7
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc--cccccEEEEeecCc
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN--ISHGSIVFLSYDGE 89 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG--LkHGDml~l~y~~~ 89 (411)
....|+ .+.|++++..-|.+++++ +..-|+-|... +.+++.++++|= -+....||++|..+
T Consensus 25 ~KflV~-~~~t~~~~v~~lRkrL~l--~alFlyVNn~f--------------~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~~ 87 (91)
T 3w1s_C 25 SVCKIS-MSQSFAMVILFLKRRLKM--DHVYCYINNSF--------------APSPQQNIGELWMQFKTNDELIVSYCAS 87 (91)
T ss_dssp -EEEEE-TTSBHHHHHHHHHHHHTC--SCCEEEETTTB--------------CCCTTSBHHHHHHHHCBTTEEEEEEEC-
T ss_pred cEEEcC-CCCCHHHHHHHHHHhhCC--ceEEEEECCcc--------------CCCcccHHHHHHHHhCCCCEEEEEEeCc
Confidence 356788 489999999999999988 44444544311 113456677662 33466999999875
No 143
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=47.08 E-value=11 Score=39.36 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=49.1
Q ss_pred CceEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCcccc--ccccccEEEEee
Q 015194 10 GLERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSL--NISHGSIVFLSY 86 (411)
Q Consensus 10 G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~l--GLkHGDml~l~y 86 (411)
|.-++.|+ .++++++|...|.+.+|+|++. ..|+..-. |+- ...+..++.|+.+. +|.+||+|...-
T Consensus 147 ~~G~~~v~-~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~------~~~---ie~l~~~~~t~~~~~~eL~~GdII~fQ~ 216 (530)
T 2ylm_A 147 YCGHIYTP-ISCKIRDLLPVMCDRAGFIQDTSLILYEEVK------PNL---TERIQDYDVSLDKALDELMDGDIIVFQK 216 (530)
T ss_dssp EEEEEEEE-TTCBGGGTHHHHHHHHTCCTTCCEEEEEEEE------TTE---EEECCCSSSBHHHHSTTCCTTEEEEEEE
T ss_pred EEEEEEEC-CCCCHHHHHHHHHHHcCCCCCCceEEEEecC------CCc---eeEcccccccHHHHHhcccCCCEEEEEe
Confidence 66678899 4999999999999999999874 55554321 111 12222367899999 999999988753
No 144
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=43.31 E-value=55 Score=25.90 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=47.2
Q ss_pred EEEEEcCC-----CceEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCccccc
Q 015194 2 LLRIRSRD-----GLERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN 75 (411)
Q Consensus 2 ilRvRS~~-----G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG 75 (411)
.||++.-. -....-|+ .+.|++++..-|.+++.++++. .-|+-+... +.+++.++++|=
T Consensus 7 ~v~fk~~g~~P~l~k~KflVp-~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~--------------~P~~d~~~~~Ly 71 (91)
T 4gdk_A 7 DILLKAVGDTPIMKTKKWAVE-RTRTIQGLIDFIKKFLKLVASEQLFIYVNQSF--------------APSPDQEVGTLY 71 (91)
T ss_dssp EEEEEECSSSCCCSCCEEEEE-TTCBHHHHHHHHHHHTTCCSSSCCEEEETTTB--------------CCCTTCBHHHHH
T ss_pred EEEEEecCCCCcccccEEEcC-CCCCHHHHHHHHHHHhCCCCCCeEEEEECCcc--------------CCChhhHHHHHH
Confidence 45666532 23467788 4899999999999999987653 344543211 112356666662
Q ss_pred --cccccEEEEeecCcc
Q 015194 76 --ISHGSIVFLSYDGER 90 (411)
Q Consensus 76 --LkHGDml~l~y~~~~ 90 (411)
-+....||++|..+.
T Consensus 72 ~~~k~DGfLyv~Ys~~~ 88 (91)
T 4gdk_A 72 ECFGSDGKLVLHYCKSQ 88 (91)
T ss_dssp HHHCBTTEEEEEEESSC
T ss_pred HHhCCCCEEEEEEeCcc
Confidence 234559999998753
No 145
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=41.20 E-value=32 Score=27.24 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=34.9
Q ss_pred EEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCcee--eccc
Q 015194 3 LRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTL--STNQ 47 (411)
Q Consensus 3 lRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~L--s~~~ 47 (411)
-||+|.....||+.+.+.-++.+|+.+|.++-++....+.| ++.+
T Consensus 11 YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~ 57 (86)
T 2c7h_A 11 YKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQ 57 (86)
T ss_dssp EEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESS
T ss_pred EEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCC
Confidence 37899999999999964559999999999987665444444 5544
No 146
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=40.41 E-value=88 Score=22.93 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=40.5
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCcccccccccc
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS 80 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD 80 (411)
|-|+|-.+.+...++++ +..|+.+|++++ +++.....+..|... ...+. -|+.||
T Consensus 5 m~i~vNg~~~~~~~~~~-~~~tv~~Ll~~l----~~~~~~v~vavN~~~---------------v~~~~-----~L~~gD 59 (70)
T 1ryj_A 5 MKFTVITDDGKKILESG-APRRIKDVLGEL----EIPIETVVVKKNGQI---------------VIDEE-----EIFDGD 59 (70)
T ss_dssp EEEEEEETTEEEEEEES-SCCBHHHHHHHT----TCCTTTEEEEETTEE---------------CCTTS-----BCCTTC
T ss_pred EEEEEeCccCceeEECC-CCCcHHHHHHHh----CCCCCCEEEEECCEE---------------CCCcc-----cCCCCC
Confidence 66888888888999998 488999998765 455444444443321 11122 478899
Q ss_pred EEEEee
Q 015194 81 IVFLSY 86 (411)
Q Consensus 81 ml~l~y 86 (411)
-|-+-.
T Consensus 60 ~V~ii~ 65 (70)
T 1ryj_A 60 IIEVIR 65 (70)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 887754
No 147
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=38.50 E-value=27 Score=37.83 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=40.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHhh--cCCCCCCceee---ccccccccCCCCcccccccCCCCCCCccccccccccEEEEe
Q 015194 11 LERVTVDGAHVTVAELKTIIQSQ--LRIPVESQTLS---TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLS 85 (411)
Q Consensus 11 ~~Rv~v~~p~~t~~~L~~kI~~~--l~~~~~~~~Ls---~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~ 85 (411)
-.+++++ ++.|+++|++.+.++ +++.....+.. .....+...-|.-+....+ .-.++|++||+++|+.|++.
T Consensus 713 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~--~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFS-PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRP--NLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEEC-TTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGG--GGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEEC-CcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHh--hhcCCHHHcCCCCCCEEEEE
Confidence 3578998 588999999999985 33433222110 0111111000100000011 22588999999999999996
No 148
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=36.55 E-value=61 Score=25.39 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=44.8
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccccccccEEEEeec
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYD 87 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~y~ 87 (411)
..+.|+ ..+.|.-++.-.+++|.+|.....+..+-+. . .++.++-+..=||||.-|-|-..
T Consensus 26 kvlsVP-E~~PftAVlkfaaEeF~vp~~TsAiiT~dGi-------------G-InP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 26 KVLSVP-ESTPFTAVLKFAAEEFKVPAATSAIITNDGI-------------G-INPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHTTCCSSSEEEECTTSC-------------C-CCCSSBHHHHHHHTCSEEEEEEC
T ss_pred eEEecC-ccCchHHHHHHHHHHcCCCccceEEEecCCc-------------c-cChhhccchhhhhcCceeEeccc
Confidence 346777 4888999999999999999876555443321 1 25677777778999998887643
No 149
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=33.53 E-value=49 Score=26.46 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=41.6
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccccccCCCCcccccccCCCCCCCccccc--cccccEEEEeecCc
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLN--ISHGSIVFLSYDGE 89 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lG--LkHGDml~l~y~~~ 89 (411)
...-|+ .+.|++++..-|.++++++ .+-|+.+... +.+++.++++|- -+....||++|..+
T Consensus 30 ~KflV~-~~~t~~~~~~~lRkrL~l~--alFlyvn~~~--------------~Ps~d~~m~~LY~~~kdDGfLyi~Ys~~ 92 (96)
T 1wz3_A 30 SKFKVS-GSDKFANVIDFLRRQLHSD--SLFVYVNSAF--------------SPNPDESVIDLYNNFGFDGKLVVNYACS 92 (96)
T ss_dssp CEEEEE-TTSBTHHHHHHHHHHHTCS--SCEEEEEEEE--------------CCCTTSBHHHHHHHHCBTTBEEEEEESC
T ss_pred cEEEeC-CCCcHHHHHHHHHHhcCCc--eEEEEECCcc--------------cCChhhHHHHHHHHhCCCCEEEEEEeCC
Confidence 466788 4889999999999999887 4344444311 113456677762 23345899999875
Q ss_pred c
Q 015194 90 R 90 (411)
Q Consensus 90 ~ 90 (411)
.
T Consensus 93 ~ 93 (96)
T 1wz3_A 93 M 93 (96)
T ss_dssp S
T ss_pred c
Confidence 3
No 150
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.23 E-value=65 Score=25.67 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=37.4
Q ss_pred EEEEcCCCceEEEecCCCCcHHHHHHHHHhhcCCCCCCceeeccccc
Q 015194 3 LRIRSRDGLERVTVDGAHVTVAELKTIIQSQLRIPVESQTLSTNQNL 49 (411)
Q Consensus 3 lRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~Ls~~~~~ 49 (411)
.||++.+-..|.-|- ..++.+|+.|..++|.++....+|..+.++
T Consensus 12 fkV~~~~Rs~k~GV~--A~sL~EL~~K~~~~l~l~~~~~~lvLeeDG 56 (91)
T 2eel_A 12 FRVSNHDRSSRRGVM--ASSLQELISKTLDALVIATGLVTLVLEEDG 56 (91)
T ss_dssp EEEECTTSCCCEEEE--ESSHHHHHHHHHHHTTCSSSCEEEEETTTC
T ss_pred EEEecCCCCeEEeEE--cCCHHHHHHHHHHHhcCCCCCcEEEEeeCC
Confidence 588888888888887 589999999999999997767777776543
No 151
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=33.21 E-value=33 Score=28.92 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=26.9
Q ss_pred EEEecCCCCcHHHHHHHHHhhcCCCCCCcee
Q 015194 13 RVTVDGAHVTVAELKTIIQSQLRIPVESQTL 43 (411)
Q Consensus 13 Rv~v~~p~~t~~~L~~kI~~~l~~~~~~~~L 43 (411)
.+.|.. +.|+++|++.|++.+|+|++.+.|
T Consensus 59 ~~rv~k-~~~~~~~~~~va~~lg~~~~~~Rl 88 (130)
T 2kvr_A 59 VFKVLK-NSSLAEFVQSLSQTMGFPQDQIRL 88 (130)
T ss_dssp EEECCT-TSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred eEEEec-cCcHHHHHHHHHHHhCCCcccEEE
Confidence 566775 899999999999999999998888
No 152
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=32.60 E-value=49 Score=34.09 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=37.4
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCC--CCceeec
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPV--ESQTLST 45 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~--~~~~Ls~ 45 (411)
|.++|.-.||+ ..++++ +++|..+|++.|.+++++.. +.|.|+.
T Consensus 217 ~~~~V~l~dg~~~~~~v~-~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITIN-SHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEEC-TTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeC-CCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35789999998 579999 69999999999999999874 5688854
No 153
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=31.42 E-value=18 Score=36.63 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=30.5
Q ss_pred eEEEecCCCCcHHHHHHHHHhh--cCCCCCCceee---ccccccccCCCCcccccccCCCCCCCccccccccccEEEEe
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQ--LRIPVESQTLS---TNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLS 85 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~--l~~~~~~~~Ls---~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGDml~l~ 85 (411)
.+++++ ++.|++++.+.+.++ +++.....+.. .....+...-|.-+....+ .-.++|++||+++|+.|++.
T Consensus 343 ~~~~~~-~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~--~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 343 QNIQFS-PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRP--NLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp BCCCC------CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC---CCC-----CCCSSCCEECC
T ss_pred ceEEEC-CCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHh--hhcCCHHHcCCCCCCEEEEE
Confidence 467787 478999999999885 33433222210 0111111110110000011 23688999999999999985
No 154
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=29.00 E-value=59 Score=23.52 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.4
Q ss_pred CEEEEEcCCCceEEEecCCCCcHHHHHHHHHhh
Q 015194 1 MLLRIRSRDGLERVTVDGAHVTVAELKTIIQSQ 33 (411)
Q Consensus 1 MilRvRS~~G~~Rv~v~~p~~t~~~L~~kI~~~ 33 (411)
|-+.+..|+|.. .+++ ...|+.+|.+.+...
T Consensus 1 m~i~i~~p~g~~-~~~~-~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 1 MEVMVFTPKGEI-KRLP-QGATALDFAYSLHSD 31 (73)
T ss_dssp CCEEEECTTCCE-EEEC-TTCBHHHHHHHHCSH
T ss_pred CeEEEEcCCCCE-EEcC-CCCcHHHHHHHHhhc
Confidence 778999999976 6888 489999998887544
No 155
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.46 E-value=76 Score=26.18 Aligned_cols=63 Identities=21% Similarity=0.420 Sum_probs=42.2
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCcccccccccc---EEEEeec
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS---IVFLSYD 87 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD---ml~l~y~ 87 (411)
...-|+ .+.|++++..-|.++++++++. +-|+.+.. +...+.++++|-=+|+| .||++|.
T Consensus 47 ~KflVp-~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~---------------~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 47 RKYLVP-SDITVAQFMWIIRKRIQLPSEKAIFLFVDKT---------------VPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp CEEEEE-TTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB---------------CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEEcC-CCCCHHHHHHhhHHhhcCCCCCcEEEEECCE---------------ecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 345677 4889999999999999988753 33344321 12345677777433432 9999998
Q ss_pred Ccc
Q 015194 88 GER 90 (411)
Q Consensus 88 ~~~ 90 (411)
.+.
T Consensus 111 ~~~ 113 (117)
T 1eo6_A 111 GEN 113 (117)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 156
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=28.35 E-value=82 Score=26.46 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=43.5
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCcccccccccc---EEEEeec
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS---IVFLSYD 87 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD---ml~l~y~ 87 (411)
.+.-|+ .+.|++++...|.+.+.++++. +-|+.+.. +.+.+.++++|-=+|+| .||+.|.
T Consensus 55 ~KflVp-~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~---------------lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 55 KKYLVP-SDLTVGQFYFLIRKRIHLRPEDALFFFVNNV---------------IPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp CEEEEE-TTSBHHHHHHHHHHHTTCCTTSCCEEEBTTB---------------CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred CEEEcC-CCCEeeeehhhhHhhcCCCccccEEEEECCc---------------cCCccchHHHHHHHcCCCCCeEEEEec
Confidence 455688 4889999999999999987754 44444321 12345677777545543 9999998
Q ss_pred Ccc
Q 015194 88 GER 90 (411)
Q Consensus 88 ~~~ 90 (411)
.+.
T Consensus 119 ~e~ 121 (125)
T 3m95_A 119 DEN 121 (125)
T ss_dssp SSS
T ss_pred Ccc
Confidence 754
No 157
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=27.92 E-value=76 Score=25.80 Aligned_cols=60 Identities=13% Similarity=0.309 Sum_probs=39.9
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCcccccccccc---EEEEeec
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS---IVFLSYD 87 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD---ml~l~y~ 87 (411)
...-|+ .+.|++++..-|.+.++++++. +-|+.+.. +...+.++++|-=+|+| .||++|.
T Consensus 46 ~KflVp-~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~---------------~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 46 RKYLVP-SDLTVGQFYFLIRKRIHLRPEDALFFFVNNT---------------IPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp CEEEEE-TTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB---------------CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEEeC-CCCcHHHHHHHHHHHhcCCCCCcEEEEECCE---------------ecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 345777 4889999999999999988753 33344321 12345677777433432 8999986
No 158
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=26.01 E-value=78 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred CEEEEEcCCCce-EEEecCCCCcHHHHHHHHHhhcCCCCC-Cceee
Q 015194 1 MLLRIRSRDGLE-RVTVDGAHVTVAELKTIIQSQLRIPVE-SQTLS 44 (411)
Q Consensus 1 MilRvRS~~G~~-Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~Ls 44 (411)
|.++|.-+||+. .++++ +++|..+|.+.|.+++++... .+.|.
T Consensus 18 ~~~~V~lldgt~~~~~vd-~~tt~~el~~~v~~~l~L~e~~~FgL~ 62 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVE-KHAKGQDLLKRVCEHLNLLEEDYFGLA 62 (296)
T ss_dssp CEEEEECTTSCEEEEECC-TTCBHHHHHHHHHHHHTCSSGGGEEEE
T ss_pred EEEEEEccCCCEEEEEEC-CCCCHHHHHHHHHHHcCCCCcceeEEE
Confidence 468999999874 68889 699999999999999997643 47774
No 159
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.81 E-value=71 Score=26.57 Aligned_cols=63 Identities=16% Similarity=0.363 Sum_probs=42.3
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCC-ceeeccccccccCCCCcccccccCCCCCCCccccccccc--c-EEEEeec
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVES-QTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHG--S-IVFLSYD 87 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~Ls~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHG--D-ml~l~y~ 87 (411)
...-|+ .+.|++++..-|.+.+.++++. +-|+-+.. +.+.+.++++|-=.|. | .||++|.
T Consensus 50 ~KflVp-~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~---------------~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 50 CKFLVP-SDLTVGQFVSVLRKRVQLEAESALFVYTNDT---------------VLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp CEEEEE-TTCBHHHHHHHHHHHHTCCTTSCCEEEETTE---------------ECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred ceEEcC-CCCCHHHHHHHHHHHhCCCccceEEEEECCc---------------CCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 455678 4889999999999999988764 44444321 1234567777643332 3 9999998
Q ss_pred Ccc
Q 015194 88 GER 90 (411)
Q Consensus 88 ~~~ 90 (411)
.+.
T Consensus 114 ~e~ 116 (119)
T 3h9d_A 114 GEA 116 (119)
T ss_dssp CC-
T ss_pred ccc
Confidence 753
No 160
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.78 E-value=79 Score=33.68 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=37.2
Q ss_pred CEEEEEcCCCc-eEEEecCCCCcHHHHHHHHHhhcCCCC-CCceeec
Q 015194 1 MLLRIRSRDGL-ERVTVDGAHVTVAELKTIIQSQLRIPV-ESQTLST 45 (411)
Q Consensus 1 MilRvRS~~G~-~Rv~v~~p~~t~~~L~~kI~~~l~~~~-~~~~Ls~ 45 (411)
|.++|+-+||+ ..++++ +++|..+|.+.|..++++.. +.+.|+.
T Consensus 264 i~~~V~llDgt~~~~~vd-s~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTD-SATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEEC-TTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEc-cCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 46899999998 679999 69999999999999999654 4688853
No 161
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=24.38 E-value=56 Score=27.63 Aligned_cols=63 Identities=22% Similarity=0.417 Sum_probs=43.1
Q ss_pred eEEEecCCCCcHHHHHHHHHhhcCCCCCC-cee-eccccccccCCCCcccccccCCCCCCCcccccccccc---EEEEee
Q 015194 12 ERVTVDGAHVTVAELKTIIQSQLRIPVES-QTL-STNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGS---IVFLSY 86 (411)
Q Consensus 12 ~Rv~v~~p~~t~~~L~~kI~~~l~~~~~~-~~L-s~~~~~~~~~~p~~~~~~~~l~~~~~tl~~lGLkHGD---ml~l~y 86 (411)
...-|+ .+.|++++..-|.+++++++.. +-| +.+.. +..++.++++|-=+|+| .||++|
T Consensus 55 ~KflVp-~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~---------------~p~~~~~m~~lY~~~kdeDGfLyv~Y 118 (130)
T 2zjd_A 55 TKFLVP-DHVNMSELIKIIRRRLQLNANQAFFLLVNGHS---------------MVSVSTPISEVYESEKDEDGFLYMVY 118 (130)
T ss_dssp CEEEEE-TTCBHHHHHHHHHHHHTCCTTCCEEEEETTTE---------------ECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred cEEEcC-CCCcHHHHHHHHHHHhCCCCCceEEEEEECCc---------------cCCccchHHHHHHHhCCCCCEEEEEE
Confidence 456688 4889999999999999988764 223 54432 12345677777434433 999999
Q ss_pred cCcc
Q 015194 87 DGER 90 (411)
Q Consensus 87 ~~~~ 90 (411)
..+.
T Consensus 119 s~e~ 122 (130)
T 2zjd_A 119 ASQE 122 (130)
T ss_dssp EEHH
T ss_pred eCCc
Confidence 8653
No 162
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=21.62 E-value=30 Score=24.74 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.9
Q ss_pred eEEEEEEeecccCC
Q 015194 207 KKVGFIFTQTIMQN 220 (411)
Q Consensus 207 ~~VG~IfTdl~~~~ 220 (411)
+.|||-+|.|++.+
T Consensus 25 ~ivgwyct~ltpeg 38 (62)
T 2rh2_A 25 QIVGWYCTNLTPEG 38 (62)
T ss_dssp EEEEEECCSSCSSE
T ss_pred eEeEEEEccccccc
Confidence 78999999998654
No 163
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.05 E-value=1.1e+02 Score=28.00 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=34.3
Q ss_pred CEEEEEcCCCce-EEEecCCCCcHHHHHHHHHhhcCCCCC-Ccee
Q 015194 1 MLLRIRSRDGLE-RVTVDGAHVTVAELKTIIQSQLRIPVE-SQTL 43 (411)
Q Consensus 1 MilRvRS~~G~~-Rv~v~~p~~t~~~L~~kI~~~l~~~~~-~~~L 43 (411)
+++||-+.||.. -|.|+ ++.|..+|.+.+.++.++..+ .++|
T Consensus 35 ~~v~v~~~d~~~k~i~v~-~~~ta~ev~~~L~~k~~~~~~~~~~l 78 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVD-ERQLARDVLDNLFEKTHCDCNVDWCL 78 (291)
T ss_dssp EEEEEECTTSCEEEEEEE-TTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred eEEEEEcCCCceEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence 478999999975 57889 699999999999999986554 3555
Done!