BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015195
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 273 FMCTPFFCNLYMGFI--TLLGIATILASLLPVFQTPEFRNV-RASLFC----GMGLSGVA 325
F+ F+CN+Y + T++ I LA + P+ Q+ +R + RAS C + ++GV
Sbjct: 95 FVTAAFYCNMYASILLMTVISIDRFLAVVYPM-QSLSWRTLGRASFTCLAIWALAIAGVV 153
Query: 326 PILHK 330
P+L K
Sbjct: 154 PLLLK 158
>pdb|3F2K|A Chain A, Structure Of The Transposase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
pdb|3F2K|B Chain B, Structure Of The Transposase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 226
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 144 PNLQRLREELKTTLP----SMDLLPSLSGWHVMEHLYNCLP-ERFSHGNQTEVCVLHSVK 198
P LQ+L E LP S DLLP+ +HV +HL N L +RF + E V+
Sbjct: 139 PTLQKLNELGYEVLPHPPYSPDLLPT--NYHVFKHLNNFLQGKRFHNQQDAENAFQEFVE 196
Query: 199 EDVANIIAPLMVRPITRWPFFAFLGGAMF 227
+ A + + I+RW G+ F
Sbjct: 197 SQSTDFYATGINQLISRWQKCVDCNGSYF 225
>pdb|1WNB|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WND|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
Length = 495
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 219 FAFLGGAMFCLLTSSACHLLSCHSERMSYIMLRLDYAGIAALISTSFYPLVYYSFMCTP 277
F F GA CL +A L H+ M+R D G+ A I+ YPL+ ++ P
Sbjct: 129 FRFFAGAARCLNGLAAGEYLEGHTS-----MIRRDPLGVVASIAPWNYPLMMAAWKLAP 182
>pdb|3K9J|A Chain A, Transposase Domain Of Metnase
pdb|3K9J|B Chain B, Transposase Domain Of Metnase
Length = 239
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 144 PNLQRLREELKTTLP----SMDLLPSLSGWHVMEHLYNCLP-ERFSHGNQTEVCVLHSVK 198
P LQ+L E LP S DLLP+ +HV +HL N L +RF + E V+
Sbjct: 152 PTLQKLNELGYEVLPHPPYSPDLLPT--NYHVFKHLNNFLQGKRFHNQQDAENAFQEFVE 209
Query: 199 EDVANIIAPLMVRPITRWPFFAFLGGAMF 227
+ + + I+RW G+ F
Sbjct: 210 SQSTDFYWTGINQLISRWQKCVDCNGSYF 238
>pdb|3K9K|A Chain A, Transposase Domain Of Metnase
pdb|3K9K|B Chain B, Transposase Domain Of Metnase
Length = 239
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 144 PNLQRLREELKTTLP----SMDLLPSLSGWHVMEHLYNCLP-ERFSHGNQTEVCVLHSVK 198
P LQ+L E LP S DLLP+ +HV +HL N L +RF + E V+
Sbjct: 152 PTLQKLNELGYEVLPHPPYSPDLLPT--NYHVFKHLNNFLQGKRFHNQQDAENAFQEFVE 209
Query: 199 EDVANIIAPLMVRPITRWPFFAFLGGAMF 227
+ + + I+RW G+ F
Sbjct: 210 SQSTDFYWTGINQLISRWQKCVDCNGSYF 238
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 170 HVMEHLYNCLPERFSHGNQTEVCVLHSVKEDVANIIAPLMVRPITRWPFFAF 221
H EHL C+ E G + + + ++ DV + + + P+ RWP F
Sbjct: 25 HFSEHLGRCIYEGLWVGEDSPIPNTNGIRNDVLEALKQMKI-PVLRWPGGCF 75
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 170 HVMEHLYNCLPERFSHGNQTEVCVLHSVKEDVANIIAPLMVRPITRWPFFAF 221
H EHL C+ E G + + + ++ DV + + P+ RWP F
Sbjct: 25 HFSEHLGRCIYEGLWVGEDSPIPNTNGIRNDVLEALKQXKI-PVLRWPGGCF 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,674,190
Number of Sequences: 62578
Number of extensions: 531921
Number of successful extensions: 1056
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 14
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)