Query 015195
Match_columns 411
No_of_seqs 175 out of 1340
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0f_A Chromodomain-helicase-D 8.9 72 0.0025 25.0 0.1 33 23-58 19-51 (87)
2 2hwj_A AGR_C_2837P, hypothetic 5.0 2.4E+02 0.0081 25.4 1.3 44 13-65 98-152 (205)
3 2dl6_A Chromodomain-helicase-D 4.7 1.3E+02 0.0045 23.3 -0.6 12 45-56 39-50 (83)
4 2ve8_A FTSK, DNA translocase F 4.3 3.4E+02 0.012 20.3 1.6 19 15-33 45-63 (73)
5 1m5a_B Insulin B chain; alpha 4.1 3.8E+02 0.013 16.7 1.4 11 86-96 8-18 (30)
6 1jr8_A ERV2 protein, mitochond 4.0 5E+02 0.017 20.9 2.5 18 67-85 71-88 (117)
7 2jmf_B Neurogenic locus notch 3.5 5.7E+02 0.019 14.9 1.7 16 60-75 8-23 (26)
8 1p4q_A CBP/P300-interacting tr 3.4 3.8E+02 0.013 18.6 1.0 16 42-57 30-46 (52)
9 1wwp_A Hypothetical protein TT 3.4 1E+03 0.034 18.6 3.9 32 60-92 49-83 (119)
10 2c34_A ICP, inhibitor of cyste 3.3 2.2E+02 0.0074 23.0 -0.4 13 51-65 28-40 (116)
No 1
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=8.94 E-value=72 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=19.3
Q ss_pred CCCCCCccccccccccccceeeeccCCcccccCCcc
Q 015195 23 VASSKEGKGRRLWKRVKYQLVEYHALPGYLRDNEFI 58 (411)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~elP~~l~dN~yI 58 (411)
|.+-...-|+|+.-+... ...+++.||++||-.
T Consensus 19 VpVIn~~tGk~L~G~~AP---~l~~L~~WL~~nP~y 51 (87)
T 2v0f_A 19 VPVVNKRNGKKMGGAMAP---PMKDLPRWLEENPEF 51 (87)
T ss_dssp CCEEESSSCCEECSSSSC---BGGGHHHHHHHCTTE
T ss_pred eeeEecCCcCcccCCcCc---hhHHHHHHHHHCCCc
Confidence 444444444555544322 235788999999865
No 2
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=5.00 E-value=2.4e+02 Score=25.41 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=29.0
Q ss_pred hchhhhhhcCCCCCCCccccccccccccceeeeccCCcc---cccCCcc--------cccccCC
Q 015195 13 EASEAMENHGVASSKEGKGRRLWKRVKYQLVEYHALPGY---LRDNEFI--------IGHYRSE 65 (411)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~elP~~---l~dN~yI--------~tGYR~~ 65 (411)
+--+.|++.|-.=-.+++|++. +++++|.. |+|+||= ..||+..
T Consensus 98 ~FW~~M~~~~w~~~~D~~G~~~---------~~~~LP~~l~~l~DDpyRSLa~~~R~~Ggy~k~ 152 (205)
T 2hwj_A 98 EFWSVMDHRNLIYPFDAQGLRR---------QSGDIPKNIHDLEDDPFRSLAGALRMAGGYAKV 152 (205)
T ss_dssp HHHHHHHHTTCCBCBCTTCCBC---------CGGGSCSSGGGCEECHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHCCCccccCCCcCCC---------ChHHcchhHHhCCCCchHHHHHHHHHcCCccCC
Confidence 3446788887777777666643 57788875 6678852 2367764
No 3
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=4.67 E-value=1.3e+02 Score=23.26 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=10.0
Q ss_pred eccCCcccccCC
Q 015195 45 YHALPGYLRDNE 56 (411)
Q Consensus 45 ~~elP~~l~dN~ 56 (411)
..+|++||++||
T Consensus 39 ~k~L~~WLk~nP 50 (83)
T 2dl6_A 39 RAELEMWLQGHP 50 (83)
T ss_dssp STTHHHHHHHCT
T ss_pred HhHHHHHHhHCC
Confidence 568889999985
No 4
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=4.33 E-value=3.4e+02 Score=20.32 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=14.3
Q ss_pred hhhhhhcCCCCCCCccccc
Q 015195 15 SEAMENHGVASSKEGKGRR 33 (411)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (411)
.+.||..|+-+..+|.++|
T Consensus 45 id~lE~~GiVgp~~gsk~R 63 (73)
T 2ve8_A 45 IEAMEMAGVVTPMNTNGSR 63 (73)
T ss_dssp HHHHHHTTSBCCCCTTSCC
T ss_pred HHHHHHCCcCCcccCCCCc
Confidence 4789999998887765543
No 5
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=4.13 E-value=3.8e+02 Score=16.69 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q 015195 86 WTHLIGFFIFL 96 (411)
Q Consensus 86 WTHlig~~~fl 96 (411)
|+||+.++.|+
T Consensus 8 Gs~LVdaL~~v 18 (30)
T 1m5a_B 8 GSHLVEALYLV 18 (30)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888775
No 6
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=4.03 E-value=5e+02 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHhhhhHHH
Q 015195 67 PLKQTLLSIFTIHNETLNV 85 (411)
Q Consensus 67 s~~~cl~SlF~~HNETvNI 85 (411)
|-.+-..-+...||| ||-
T Consensus 71 sr~~~~lWLw~~HN~-VN~ 88 (117)
T 1jr8_A 71 SRTAAAMWGCHIHNK-VNE 88 (117)
T ss_dssp SHHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHH-HHH
Confidence 455667788889998 664
No 7
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=3.51 E-value=5.7e+02 Score=14.86 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=10.5
Q ss_pred ccccCCCCHHHHHHHH
Q 015195 60 GHYRSEWPLKQTLLSI 75 (411)
Q Consensus 60 tGYR~~~s~~~cl~Sl 75 (411)
+|-+..-||.+|+|..
T Consensus 8 tgakqppsyedcik~~ 23 (26)
T 2jmf_B 8 TGAKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCCCHHHHHHhh
Confidence 4545556788888753
No 8
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=3.40 E-value=3.8e+02 Score=18.57 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=11.3
Q ss_pred eeeeccCCc-ccccCCc
Q 015195 42 LVEYHALPG-YLRDNEF 57 (411)
Q Consensus 42 l~~~~elP~-~l~dN~y 57 (411)
|-+..|+|+ |+-.|++
T Consensus 30 LdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 30 LDRIKELPELWLGQNEF 46 (52)
T ss_dssp SSSCSSCCCCCSCCSTT
T ss_pred hHHHHHhHHHHhCcchh
Confidence 447789997 5666765
No 9
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=3.40 E-value=1e+03 Score=18.63 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=25.4
Q ss_pred ccccCCCCHHHHHHHHHH---HhhhhHHHHHHHHHH
Q 015195 60 GHYRSEWPLKQTLLSIFT---IHNETLNVWTHLIGF 92 (411)
Q Consensus 60 tGYR~~~s~~~cl~SlF~---~HNETvNIWTHlig~ 92 (411)
.|++ ..|.|+|++-+|+ +.+|....|--++++
T Consensus 49 ~g~~-~~s~rd~~r~a~~~glI~~~~~~~w~~m~~~ 83 (119)
T 1wwp_A 49 EGLE-GASPKGVIRLAREVGLLRDEEARLALGMVDD 83 (119)
T ss_dssp HCCC-CCSHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 4777 7889999999999 467767788777654
No 10
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=3.34 E-value=2.2e+02 Score=22.97 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=8.5
Q ss_pred ccccCCcccccccCC
Q 015195 51 YLRDNEFIIGHYRSE 65 (411)
Q Consensus 51 ~l~dN~yI~tGYR~~ 65 (411)
-|.+|| .||||=.
T Consensus 28 ~L~~NP--tTGY~W~ 40 (116)
T 2c34_A 28 HLKGNP--TTGYMWT 40 (116)
T ss_dssp EEECCT--TSSCEEE
T ss_pred EeCCCC--CCCcEEE
Confidence 356776 7788653
Done!