Query 015195
Match_columns 411
No_of_seqs 175 out of 1340
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 08:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 15.9 16 0.0012 26.7 0.2 13 360-374 5-17 (88)
2 d1tdja3 d.58.18.2 (A:424-514) 9.9 26 0.0019 25.7 -0.3 13 360-374 12-24 (91)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 8.8 99 0.0072 17.0 2.0 15 349-363 3-17 (27)
4 d1bu2a2 a.74.1.1 (A:149-250) V 6.9 28 0.002 25.1 -1.3 15 360-374 12-26 (102)
5 d2v0fa1 d.76.2.1 (A:2629-2715) 6.2 56 0.0041 23.7 0.1 44 23-73 19-62 (87)
6 d1ek6a_ c.2.1.2 (A:) Uridine d 5.2 1.3E+02 0.0092 25.7 2.0 33 47-79 303-337 (346)
7 d2ve8a1 a.4.5.67 (A:745-811) D 5.2 1.3E+02 0.0095 20.5 1.6 19 15-33 39-57 (67)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 4.6 2.4E+02 0.017 16.8 2.3 15 215-229 10-24 (37)
9 d2j5pa1 a.4.5.67 (A:1261-1329) 4.4 1.4E+02 0.01 20.4 1.3 19 15-33 42-60 (69)
10 d1ik7a_ a.77.1.2 (A:) Pelle de 4.3 2.3E+02 0.017 18.2 2.3 27 375-401 11-39 (52)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.91 E-value=16 Score=26.71 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=10.6
Q ss_pred hhhccCCcccCCCcc
Q 015195 360 VYATRIPERWMPGKF 374 (411)
Q Consensus 360 fYa~r~PER~~PG~F 374 (411)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 577889998 8975
No 2
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.85 E-value=26 Score=25.72 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=10.3
Q ss_pred hhhccCCcccCCCcc
Q 015195 360 VYATRIPERWMPGKF 374 (411)
Q Consensus 360 fYa~r~PER~~PG~F 374 (411)
+|+..+||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 677899998 8854
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.83 E-value=99 Score=16.98 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=8.9
Q ss_pred HHHHHHhhhhhhhhc
Q 015195 349 LMGLFYGLGALVYAT 363 (411)
Q Consensus 349 ~~~~~y~~G~~fYa~ 363 (411)
++.++..+|..||+.
T Consensus 3 lgli~~tl~glf~aa 17 (27)
T d2e74g1 3 LGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 445556666666653
No 4
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=6.87 E-value=28 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=11.7
Q ss_pred hhhccCCcccCCCcc
Q 015195 360 VYATRIPERWMPGKF 374 (411)
Q Consensus 360 fYa~r~PER~~PG~F 374 (411)
-.+.|+||.+||.-|
T Consensus 12 c~alkipe~~wpql~ 26 (102)
T d1bu2a2 12 CNALKIPEDLWPQLY 26 (102)
T ss_dssp HHHTTCCTTSHHHHH
T ss_pred hhhccCcHHHhHHHH
Confidence 467899999988544
No 5
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.21 E-value=56 Score=23.71 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCCCCccccccccccccceeeeccCCcccccCCcccccccCCCCHHHHHH
Q 015195 23 VASSKEGKGRRLWKRVKYQLVEYHALPGYLRDNEFIIGHYRSEWPLKQTLL 73 (411)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~elP~~l~dN~yI~tGYR~~~s~~~cl~ 73 (411)
|.+-+...|+++.-.... ..+++..||++|| +|=.--.+-+|.|
T Consensus 19 V~Vinr~TGk~L~G~~AP---~~~~L~~WL~~nP----~y~V~P~w~~~vk 62 (87)
T d2v0fa1 19 VPVVNKRNGKKMGGAMAP---PMKDLPRWLEENP----EFAVAPDWTDIVK 62 (87)
T ss_dssp CCEEESSSCCEECSSSSC---BGGGHHHHHHHCT----TEEECHHHHHHHH
T ss_pred eEEEECCCccCcccccCc---cHHHHHHHHHHCC----CceeCccHHHHHh
Confidence 444445555555533322 3468889999996 3433323445554
No 6
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.23 E-value=1.3e+02 Score=25.68 Aligned_cols=33 Identities=3% Similarity=0.100 Sum_probs=25.5
Q ss_pred cCCcccccCCcccc--cccCCCCHHHHHHHHHHHh
Q 015195 47 ALPGYLRDNEFIIG--HYRSEWPLKQTLLSIFTIH 79 (411)
Q Consensus 47 elP~~l~dN~yI~t--GYR~~~s~~~cl~SlF~~H 79 (411)
|.+...-|+..++. ||++..|+.+.++.+..|.
T Consensus 303 e~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~ 337 (346)
T d1ek6a_ 303 DVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQ 337 (346)
T ss_dssp CCSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHH
T ss_pred CCCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 34455557777764 9999999999999988763
No 7
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.17 E-value=1.3e+02 Score=20.45 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=14.4
Q ss_pred hhhhhhcCCCCCCCccccc
Q 015195 15 SEAMENHGVASSKEGKGRR 33 (411)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (411)
.+.||+.|+-+..+|.++|
T Consensus 39 id~LE~~GiVsp~~g~~~R 57 (67)
T d2ve8a1 39 IEAMEMAGVVTPMNTNGSR 57 (67)
T ss_dssp HHHHHHTTSBCCCCTTSCC
T ss_pred HHHHHHCcCCCCCCCCCCC
Confidence 4789999999887765554
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.58 E-value=2.4e+02 Score=16.84 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHH
Q 015195 215 RWPFFAFLGGAMFCL 229 (411)
Q Consensus 215 ~~~~~if~~~~~~~l 229 (411)
.|.|++|+++.+.++
T Consensus 10 ly~Fw~FFagLi~YL 24 (37)
T d1eysh2 10 IWAFWLFFFGLIIYL 24 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888888887654
No 9
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=4.39 E-value=1.4e+02 Score=20.37 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=14.1
Q ss_pred hhhhhhcCCCCCCCccccc
Q 015195 15 SEAMENHGVASSKEGKGRR 33 (411)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (411)
.+.||+.|+-+..++.++|
T Consensus 42 id~LE~~GiVsp~~~~~~R 60 (69)
T d2j5pa1 42 IEQMEAQGIVSEQGHNGNR 60 (69)
T ss_dssp HHHHHHHTSBCCCCSSSEE
T ss_pred HHHHHHCCcCCCCCCCCCC
Confidence 4789999998887665543
No 10
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=4.33 E-value=2.3e+02 Score=18.17 Aligned_cols=27 Identities=15% Similarity=0.141 Sum_probs=23.0
Q ss_pred ccCCC--chhHHHHHHHHHHHHHHHHHHH
Q 015195 375 DIAGH--SHQLFHILVVAGAYTHYRAGLV 401 (411)
Q Consensus 375 D~~G~--SHqiwHifVv~g~~~h~~ai~~ 401 (411)
++||+ .|-|.-+|+++.-.-|+.|+..
T Consensus 11 ~~Wg~q~NHTi~eLF~ll~~mk~~~aM~i 39 (52)
T d1ik7a_ 11 NIWGGQYNHTVQTLFALFKKLKLHNAMRL 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 45666 7999999999999999998874
Done!