BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015196
(411 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
Length = 766
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/408 (95%), Positives = 405/408 (99%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+ +NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKV
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKV 664
>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3
Length = 767
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/408 (96%), Positives = 406/408 (99%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKV
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKV 664
>sp|O00835|ERCC3_DICDI TFIIH basal transcription factor complex helicase repB subunit
OS=Dictyostelium discoideum GN=repB PE=2 SV=1
Length = 800
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/408 (71%), Positives = 336/408 (82%), Gaps = 8/408 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+LN++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 293 VLEEYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ QI +FTSD+KE+ AGV +TT
Sbjct: 353 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITT 412
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+RS ES KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 413 YTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 472
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL ++
Sbjct: 473 LLREDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQG 532
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFRACE+LIRFHE QRGDKIIVF+DN++AL +YA L + IYG TS
Sbjct: 533 KKKLLYTMNPNKFRACEYLIRFHE-QRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGH 591
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + TIF+SKVGD SIDIPEA VIIQ+SSH GSRRQEAQRLGRILR K
Sbjct: 592 ERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPK 651
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKV
Sbjct: 652 PKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKV 692
>sp|Q7ZVV1|ERCC3_DANRE TFIIH basal transcription factor complex helicase XPB subunit
OS=Danio rerio GN=ercc3 PE=2 SV=1
Length = 782
Score = 587 bits (1512), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/408 (67%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+NM+LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDTVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 350 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 528 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 647 KGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 688
>sp|Q5RA62|ERCC3_PONAB TFIIH basal transcription factor complex helicase XPB subunit
OS=Pongo abelii GN=ERCC3 PE=2 SV=1
Length = 782
Score = 586 bits (1511), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/408 (67%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 689
>sp|Q1RMT1|ERCC3_BOVIN TFIIH basal transcription factor complex helicase XPB subunit
OS=Bos taurus GN=ERCC3 PE=2 SV=1
Length = 782
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/408 (66%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 689
>sp|Q60HG1|ERCC3_MACFA TFIIH basal transcription factor complex helicase XPB subunit
OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1
Length = 782
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/408 (67%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 689
>sp|P19447|ERCC3_HUMAN TFIIH basal transcription factor complex helicase XPB subunit
OS=Homo sapiens GN=ERCC3 PE=1 SV=1
Length = 782
Score = 585 bits (1509), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/408 (67%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 689
>sp|P49135|ERCC3_MOUSE TFIIH basal transcription factor complex helicase XPB subunit
OS=Mus musculus GN=Ercc3 PE=2 SV=1
Length = 783
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/408 (66%), Positives = 336/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 649 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 690
>sp|Q4G005|ERCC3_RAT TFIIH basal transcription factor complex helicase XPB subunit
OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1
Length = 782
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/408 (66%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 689
>sp|Q5ZKK7|ERCC3_CHICK TFIIH basal transcription factor complex helicase XPB subunit
OS=Gallus gallus GN=ERCC3 PE=2 SV=1
Length = 788
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 271/408 (66%), Positives = 337/408 (82%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 406
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +++REWGL+++DEVH +PA MFR+V+++ ++HCKL LTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLELTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKV
Sbjct: 645 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKV 686
>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SSL2 PE=1 SV=1
Length = 843
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/408 (65%), Positives = 331/408 (81%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKV
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKV 735
>sp|O13768|ERCC3_SCHPO Probable DNA repair helicase ercc3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ercc3 PE=1 SV=1
Length = 804
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/408 (66%), Positives = 328/408 (80%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN+NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 299 LLEEYDFRNDNINPDLPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 358
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WS I+ D I FT+D KERF AGVVV+T
Sbjct: 359 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVST 418
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 419 YSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTAT 478
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANW+DL + G IA VQCAEVWC MT EF++EYL +ENS+
Sbjct: 479 LVREDDKIDDLNFLIGPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEFYNEYL-RENSR 537
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 538 KRMLLYIMNPKKFQACQFLIDYHE-KRGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQ 596
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 597 ERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 656
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKV
Sbjct: 657 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKV 697
>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Drosophila melanogaster
GN=hay PE=1 SV=2
Length = 798
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/408 (64%), Positives = 326/408 (79%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KV
Sbjct: 664 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKV 705
>sp|C4V922|RAD25_NOSCE Probable DNA repair helicase RAD25 homolog OS=Nosema ceranae
(strain BRL01) GN=RAD25 PE=3 SV=1
Length = 659
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/408 (62%), Positives = 312/408 (76%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ND V ++LKP R YQE L+KMF NGRARSGIIVLPCG+GK+LVG
Sbjct: 179 LIEEYDFKNDTVLESFFIDLKPSTMIRSYQETCLNKMFCNGRARSGIIVLPCGSGKTLVG 238
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q L++ I D ICRFTS+ KE ++ G+++TT
Sbjct: 239 ITALTTIKKSCLILCTSAVSVEQWRQQTMLFTNISGDNICRFTSEYKEWYKDKCGIIITT 298
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ I++ EWGLLL+DEVHVVPA MFRKVISL HCKLGLTAT
Sbjct: 299 YTMLAYNGKRSPEAQKIMDLIQSTEWGLLLLDEVHVVPAMMFRKVISLVTHHCKLGLTAT 358
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL + S+
Sbjct: 359 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIAKVECFEVWCGMTGEFYKEYL-IQTSR 417
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ L +MNP KF+ACE+LI HE +GDKIIVF+D++ AL YA+KL KP IYG T
Sbjct: 418 KKRLLSIMNPTKFQACEYLISRHE-AKGDKIIVFSDSVAALKSYALKLGKPFIYGPTGQT 476
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 477 ERMRILKQFQTNPLINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 536
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ ++ FFYSLVS DT EMFYS+KRQQFL+DQGYSF +
Sbjct: 537 RR-------NDPDFKVFFYSLVSKDTDEMFYSSKRQQFLVDQGYSFNI 577
>sp|Q6E6J3|RAD25_ANTLO Probable DNA repair helicase RAD25 homolog OS=Antonospora locustae
GN=RAD25 PE=3 SV=1
Length = 687
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/407 (59%), Positives = 309/407 (75%), Gaps = 9/407 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
M+EEYDFR+D L+M+L+ R YQE SL+KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 203 MIEEYDFRDDVALRSLDMDLRDTVSIRTYQEVSLNKMFGNRRARSGVIVLPCGAGKTLVG 262
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A C IKK C+ L T+ VSV+QW Q +ST+ D + RFTS+ KE F +AG+++TT
Sbjct: 263 ITAMCTIKKPCIVLCTSGVSVEQWRQQVLAFSTVSADAVSRFTSERKEMFEADAGILITT 322
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AF G+RS E+++++E +R EWGL+++DEVHVVPA MFRKV+S HCKLGLTAT
Sbjct: 323 YTMLAFSGRRSAEAQRVMEWLRGTEWGLMILDEVHVVPAAMFRKVVSAVSHHCKLGLTAT 382
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL ++ +
Sbjct: 383 LVREDDKIEDLNFLIGPKLYEADWQDLSMQGHIARVECVEVWCDMTAEFYREYL-GQDPR 441
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CEFLIR HE G+KIIVF+DN+ AL YA+KL KP IYG T
Sbjct: 442 RRRVLSIMNPAKFQTCEFLIRKHEAL-GEKIIVFSDNVLALRTYALKLGKPFIYGPTGQT 500
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NT+FLSKVGD SID+PEA+ +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 501 ERMRILRQFQTNPAINTLFLSKVGDTSIDLPEASCLIQISSHFGSRRQEAQRLGRILRAK 560
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
+ + +FY+LVS DT+EM+YS KRQQFL+DQGY+F+
Sbjct: 561 RR-------NDPGFRVYFYTLVSKDTEEMYYSRKRQQFLVDQGYTFR 600
>sp|Q8SSK1|RAD25_ENCCU Probable DNA repair helicase RAD25 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RAD25 PE=3 SV=1
Length = 696
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/408 (60%), Positives = 311/408 (76%), Gaps = 9/408 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 208 LIEEYDFRNDKVLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 267
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKK+CL L T+AVSV+QW Q ++ + D + RFTSD KE + ++G+V+TT
Sbjct: 268 ITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDDSGIVITT 327
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 328 YTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 387
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 388 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCIEVWCGMTGDFYREYL-SQPTR 446
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 447 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 505
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 506 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 565
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F +
Sbjct: 566 RR-------NDPDFKVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTI 606
>sp|A9CRJ7|RAD25_ENTBH Probable DNA repair helicase RAD25 homolog OS=Enterocytozoon
bieneusi (strain H348) GN=RAD25 PE=3 SV=1
Length = 609
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/418 (58%), Positives = 309/418 (73%), Gaps = 19/418 (4%)
Query: 1 MLEEYDF---RNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS 57
+++EYD+ + N+ +L+++LKP R YQE SL+KM GNGRARSGIIVLPCG+GK+
Sbjct: 161 LIDEYDYTAYESVNMIKNLHIDLKPSCHIRSYQEISLNKMLGNGRARSGIIVLPCGSGKT 220
Query: 58 LVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR------ 111
LVG++A IKKS + L T+AVSV+QW L++TI + RFTSD KE F
Sbjct: 221 LVGITAISTIKKSAIILCTSAVSVEQWKQSILLFTTINPYSVSRFTSDCKEWFENYNVEN 280
Query: 112 -GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170
G+++TTY+M++F GKRS + ++II +I WG++++DEVHVVPA MFRKV+S
Sbjct: 281 TSQGGILITTYSMLSFSGKRSYDVQRIINKIFAYNWGIMILDEVHVVPAQMFRKVVSSVL 340
Query: 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230
CKLGLTATLVRED++I DLNFLIGPKLYEANW DL G IA V+C+EVWC MT EF+
Sbjct: 341 HQCKLGLTATLVREDDKIEDLNFLIGPKLYEANWQDLSDKGHIAKVECSEVWCEMTAEFY 400
Query: 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290
EYL ++ SKK+ L +MNP K + CE+LI+ HE Q GDKIIVF+D++FAL EYA+K++K
Sbjct: 401 REYLIQDTSKKR-LLSIMNPVKIQMCEYLIQKHEAQ-GDKIIVFSDSVFALKEYAIKMKK 458
Query: 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEA 350
P IYG TS ER KIL+ F+ + +NT+FLSKVGD SID+PEA +IQISSH GSRRQEA
Sbjct: 459 PFIYGPTSQTERMKILKQFQINSKINTLFLSKVGDTSIDLPEATCLIQISSHFGSRRQEA 518
Query: 351 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
QRLGR+LRAK + + A+FYSLVS DT+EM YS KRQQFLIDQGYSFK
Sbjct: 519 QRLGRVLRAKKR-------NNPNFKAYFYSLVSKDTEEMHYSAKRQQFLIDQGYSFKT 569
>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0022 PE=4 SV=1
Length = 559
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 154/339 (45%), Gaps = 39/339 (11%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK----SCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100
+GII P G+GKS++ + +A I K + + A N+ ++ + QF+ ++ +D
Sbjct: 194 NGIIKAPTGSGKSVIAILSALEILKNKNNAKIVYAVNSTTLLK---QFQNFAKKEDLPFV 250
Query: 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160
+ + E +G + + K+ E EK+ E + N + L+++DE H PA+
Sbjct: 251 LVSGEIDEIKKGERSDFIALSISYYYSKKKRNEHEKLKELVTNAD--LVIIDEAHHTPAN 308
Query: 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE 220
+ + ++ + + +LGL+AT +RED + ++ L+G + ++ +LV+ ++ ++
Sbjct: 309 IVKSLLLDSPNSIRLGLSATPIREDGKELEIMGLLGKISFTIDYTELVRNRYLVPIEYIR 368
Query: 221 VWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA 280
+ K+ + +++K + + R+ E H +II +
Sbjct: 369 YIPEIPKKLKLKIQDLDDNKDPENFAKYYSSLLRSFE-----HSPNTNKQII---SKIKQ 420
Query: 281 LTEY-----------AMKLRKPM---------IYGATSHVERTKILQAFKCSRDLNTIFL 320
L +Y A KL + M + T ER + ++A K + L +
Sbjct: 421 LNQYPCLVIVRRIAIAKKLAEIMRENGIIADWVSSKTKLEERMEKIEALKNEK-LQVLIS 479
Query: 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+ + D +DIP +++ + + SR + QR+GR++R
Sbjct: 480 TSLADEGLDIPNLRLVVLL-TQGKSRIKLIQRIGRVMRV 517
>sp|Q5UQ46|YL396_MIMIV Putative ATP-dependent RNA helicase L396 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L396 PE=3 SV=1
Length = 519
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 27 RPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
RP+Q+ K+ G G++V+ CG+GK+ V + AC+ K L + DQ
Sbjct: 99 RPHQQMVSDKIIKGMEEGGGGVLVMGCGSGKTNVAIYIACKFKLRTLFVVHKTFLRDQVI 158
Query: 86 FQFKLWSTIQDDQIC-RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ K + ++ I R + K F VV+ MV K + E +
Sbjct: 159 DRIKSNTNVKKVGIIQRKIVNYKHPF------VVS---MVQSLAKINYNDEIF------K 203
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLY 200
++G++++DEVH + A F V S LG++A R D +N+ +GP L+
Sbjct: 204 DFGMIIIDEVHHMGARNFSTVYQKISSKYMLGISAEYTRTDGMYKIINWYMGPILH 259
>sp|P11107|VD10_BPT5 Probable helicase OS=Enterobacteria phage T5 GN=D10 PE=4 SV=1
Length = 450
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112
G GK+++ ++ A + + L + TN + WA + + W + I ++
Sbjct: 111 GFGKTILALALAYKFGQKTLVICTNTSIREMWAAEVRKWFGFEPGII------GSGKYNI 164
Query: 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH 172
+ +VV+ V K + K+ +G +++DEVH A F + ++ +
Sbjct: 165 DPPIVVSNIQTV---NKHANNLSKV--------FGTVIVDEVHHCVATTFTNFLEISCAR 213
Query: 173 CKLGLTATLVRED 185
K+GL+ TL R+D
Sbjct: 214 YKIGLSGTLKRKD 226
>sp|P33919|YEJH_ECOLI Uncharacterized protein YejH OS=Escherichia coli (strain K12)
GN=yejH PE=4 SV=2
Length = 586
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 154/385 (40%), Gaps = 87/385 (22%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLA--TNAVSVD 82
RPYQ++++ + R +IVLP GAGKSLV A + L LA V+ +
Sbjct: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQN 65
Query: 83 QWAFQ-FKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141
+Q L + I + R S K F V N+ AF G
Sbjct: 66 HAKYQALGLEADIFAAGLKRKESHGKVVF---GSVQSVARNLDAFQG------------- 109
Query: 142 RNREWGLLLMDEVHVV---PAHMFRKVIS-LTK--SHCK-LGLTAT-------------- 180
E+ LL++DE H + ++++++ LTK H + LGLTAT
Sbjct: 110 ---EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166
Query: 181 --LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
+VR DE+ L +YE ++K G++ + ++ P+ + FS + N
Sbjct: 167 HGMVRGDEKA-----LFRDCIYELPLRYMIKHGYLTPPERLDM--PVVQYDFSRLQAQSN 219
Query: 239 S-----------KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK 287
KK+Q + P+ ++ F ++G +++FA A E+A +
Sbjct: 220 GLFSEADLNRELKKQQRI---TPHIISQ---IMEFAATRKG--VMIFA----ATVEHAKE 267
Query: 288 L-------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340
+ +I G T ER +++ FK R + V D P + +I I
Sbjct: 268 IVGLLPAEDAALITGDTPGAERDVLIENFKAQR-FRYLVNVAVLTTGFDAPHVD-LIAIL 325
Query: 341 SHAGSRRQEAQRLGRILR-AKGKLE 364
S Q +GR LR A GK +
Sbjct: 326 RPTESVSLYQQIVGRGLRLAPGKTD 350
>sp|P53115|INO80_YEAST Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=INO80 PE=1 SV=1
Length = 1489
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKS-----CLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + ++ + T A ++ W QFK+
Sbjct: 726 NGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILP 785
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D ++ R D K R+ NA V+VT+Y MV ++ +W
Sbjct: 786 YWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANY----------LQKMKW 835
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + L I P L+++
Sbjct: 836 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDS 894
>sp|A6ZU34|INO80_YEAS7 Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain
YJM789) GN=INO80 PE=3 SV=1
Length = 1495
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKS-----CLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + ++ + T A ++ W QFK+
Sbjct: 732 NGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILP 791
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D ++ R D K R+ NA V+VT+Y MV ++ +W
Sbjct: 792 YWGNANDRKVLRKFWDRKNLRYSKNAPFHVMVTSYQMVVTDANY----------LQKMKW 841
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + L I P L+++
Sbjct: 842 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDS 900
>sp|O55759|VF161_IIV6 Putative helicase 161L OS=Invertebrate iridescent virus 6
GN=IIV6-161L PE=3 SV=1
Length = 442
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 48 IVLPC--GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC---RF 102
+++ C G GK++ ++ AC+++ L + T V ++QW + ++ I
Sbjct: 97 VIISCFTGFGKTIGAINLACKLRLKTLIIVTRVVLMNQWKESILKFCESENKTIPIVEII 156
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M 161
+S+SK+ + ++ N+ +E+ +G +++DEVH+V A
Sbjct: 157 SSNSKDEYVMCNFAIINAINIPK------------MEQGFLESFGTVIVDEVHLVMARKT 204
Query: 162 FRKVISLTKSHCKLGLTATLVRED 185
FR ++ +T + + L+AT R D
Sbjct: 205 FRSLLYVTPRYL-IALSATSYRSD 227
>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP3 PE=3 SV=2
Length = 534
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 238 NSKKKQALYVMNP--NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK----- 290
N + Q + VM+P + R + L ++ Q KI+VFA T LR+
Sbjct: 341 NKRITQTVEVMDPRDKERRLLQLLRQYGSDQ---KILVFALYKKEATRVEAMLRRSGFNV 397
Query: 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEA 350
I+G S +RT L +FK D N + + V +DIP V+I + + +
Sbjct: 398 AAIHGDLSQQQRTSALDSFKRG-DSNLLLATDVAARGLDIPNVKVVINL-TFPLTVEDYV 455
Query: 351 QRLGRILRA 359
R+GR RA
Sbjct: 456 HRIGRTGRA 464
>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPB4 PE=1 SV=1
Length = 606
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQR 352
++G RTK L AF S + +F + V IDIP+ +++IQ+ + R
Sbjct: 299 LHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNT-DMFMHR 357
Query: 353 LGRILRAK--GKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389
GR RA GK + G+EE F + + + +E+
Sbjct: 358 CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEEL 396
>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SPB4 PE=3 SV=1
Length = 606
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQR 352
++G RTK L AF S + +F + V IDIP+ +++IQ+ + R
Sbjct: 299 LHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNT-DMFMHR 357
Query: 353 LGRILRAK--GKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389
GR RA GK + G+EE F + + + +E+
Sbjct: 358 CGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEEL 396
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 30/162 (18%)
Query: 23 HAQPRPYQEKSLS---KMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLC 73
H Q YQ++ ++ ++ +GR R GI+ G GK+ L G+ A + L
Sbjct: 93 HNQLYEYQKEGIAFLYSLYRDGR-RGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLI 151
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAF 126
+ T+ +S W +F W+ ++ F SK+ R + GV++TTY M+
Sbjct: 152 MPTSLIST--WLREFVKWTPGM--RVKTFHGPSKDERTRNLCRIQQRNGVIITTYQMLIN 207
Query: 127 GGKRSEESEKIIEEIRNRE--WGLLLMDEVHVVPAHMFRKVI 166
++ + + +E W +++DE H + + + I
Sbjct: 208 NWQQ-------LSSLNGQEFLWDYVILDEAHKIKSSSTKSAI 242
>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=mph1 PE=3 SV=1
Length = 1119
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK-GKL 363
I+Q FK D NTI + +G+ +DI E ++I+ S A R QR+GR R + G +
Sbjct: 729 IVQKFKKG-DYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRM-LQRMGRTGRKRAGNI 786
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
+ GKEE + QEM S R F D
Sbjct: 787 VLLLMQGKEEESYIRAKDNYEKMQEMIASGTRFAFHDD 824
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 27/148 (18%)
Query: 34 LSKMFGNGRARSGIIVLPCGAGKS------LVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87
L ++ +GR + GI+ G GK+ L G+ A + L + TN ++ W +
Sbjct: 107 LYSLYRDGR-KGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINT--WVKE 163
Query: 88 FKLWSTIQDDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE 140
F W+ ++ F SK+ R + GV++TTY M+ ++ +
Sbjct: 164 FIKWTPGM--RVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQ-------LSS 214
Query: 141 IRNRE--WGLLLMDEVHVVPAHMFRKVI 166
R +E W +++DE H + + I
Sbjct: 215 FRGQEFVWDYVILDEAHKIKTSSTKSAI 242
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPB4 PE=3 SV=1
Length = 617
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P T F +K E K + +++MN +F+ C ++ F + F L L
Sbjct: 233 APTTLNLFYSVMKPE-EKLQNLIHIMNNIRFKKC--IVYFSTCV---SVTFFYQYLKYLQ 286
Query: 283 EYAMKLRKPM----IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ 338
+ LR+ + I+G + R K L F S + + V IDIP+ ++++Q
Sbjct: 287 QTDKTLREDLQVISIHGKLTTQSRRKALSTFTESLSDCILLTTDVAARGIDIPDVDLVLQ 346
Query: 339 ISS--------HAGSRRQEAQRLGR--ILRAKGKLED 365
I H R A ++GR + +G+ ED
Sbjct: 347 IDPPTDADIFLHRCGRTGRANKIGRAIVFLNEGREED 383
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS)
GN=DBP3 PE=3 SV=2
Length = 515
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 149/394 (37%), Gaps = 84/394 (21%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV-G 60
+ + F ++ N DL + L+ + P P Q S F R I V G+GK+L G
Sbjct: 99 ITSFSFLPESSN-DLYLPLEKFSSPTPIQAVSWPLAFA---GRDLIGVAETGSGKTLAFG 154
Query: 61 VSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114
+ R+ + SC A + A Q DQ+ RF+S
Sbjct: 155 LPCLRRVLELNNSETSCKPCALIITPTRELAVQIY-------DQLLRFSS---------- 197
Query: 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174
V +GG + + EIRN V P + K ++
Sbjct: 198 --AVDVGIACIYGGSPKDHQRR---EIRNASV-------VIATPGRL--KDFQADQTINL 243
Query: 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG----------GFIA-------NVQ 217
G+ ++ E +R+ D K +E + D+VKG F A N+
Sbjct: 244 SGVKYLVLDEADRMLD-------KGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLA 296
Query: 218 CAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP--NKFRACEFLIRFHEQQRGD-KIIVF 274
+ P+T + N + KQ + V+ P R E L R+ + + + +I+VF
Sbjct: 297 ASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVF 356
Query: 275 ADNLFALTEYAMKLRKPM---------IYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
+ AM++ + + I+G S ER + L+AFK S ++ + + V
Sbjct: 357 C----LYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFK-SGSISLLVATDVAA 411
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+DIP +++ + + + R+GR RA
Sbjct: 412 RGLDIPAVKLVLNV-TFPLTIEDYVHRIGRTGRA 444
>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides immitis (strain RS)
GN=MPH1 PE=3 SV=1
Length = 1110
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR----------ILRAKGKLED 365
NTI + +G+ +DI E ++II H+ R QR+GR +L +KGK E+
Sbjct: 758 NTIVATSIGEEGLDIGEVDLIICYDGHSSPIRM-LQRMGRTGRKRAGNIILLLSKGKEEE 816
Query: 366 RMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399
+ K+ Y L+++ ++ F++ K + +
Sbjct: 817 SYSKAKDSYEK-MQQLIASGSRFTFHTDKSSRIV 849
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mfd PE=3 SV=1
Length = 697
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 36/172 (20%)
Query: 28 PYQEKSLSKMFGNGRARSGIIVLPCGA---GKSLVGVSAA----CRIKKSCLCLATNAVS 80
P Q+ +++ + + + + L CG GK+ V + A C K+ + + T ++
Sbjct: 156 PDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLA 215
Query: 81 ---VDQWAFQFKLWSTIQDDQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRS 131
+ + +FK WST + + + RF S++K GN V++ T+ ++
Sbjct: 216 QQHFNNFTLRFKYWST-KIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKIL------- 267
Query: 132 EESEKIIEEIRNREW---GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
++N +W GLL++DE H H ++ ++ + L LTAT
Sbjct: 268 ---------LKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTAT 310
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 27 RPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSA----ACR--IKKSCLCLATNAV 79
R YQ L + G +GI+ G GK++ ++ AC + L + +V
Sbjct: 946 REYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLAHLACHHEVWGPHLVIVPTSV 1005
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG--------VVVTTYNMVAFGGKRS 131
++ W +FK W +I + + +ER R G V +T+Y MV
Sbjct: 1006 MLN-WEMEFKKW--CPGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVL------ 1056
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--KSHCKLGLTATLVRED--ER 187
+ +++ R R W +++DE H + ++ +L + +L LT T ++ + E
Sbjct: 1057 -QDQQVF---RRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTEL 1112
Query: 188 ITDLNFLIGPKLYEANWLDLVK 209
+ L FL P+ E ++DL +
Sbjct: 1113 WSLLYFLAPPENGEGGFVDLTE 1134
>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=mph1 PE=3 SV=2
Length = 1124
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK-GKL 363
I+Q FK NTI + +G+ +DI E ++I+ S A R QR+GR R + GK+
Sbjct: 744 IVQKFKKG-TYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRM-LQRMGRTGRKRSGKI 801
Query: 364 EDRMAGGKEE 373
+ GKEE
Sbjct: 802 TLLLMQGKEE 811
>sp|O95786|DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58 OS=Homo sapiens GN=DDX58
PE=1 SV=2
Length = 925
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
IL AFK S D N + + V D IDI + N++I + + G+ + Q GR RA+G
Sbjct: 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVI-LYEYVGNVIKMIQTRGR-GRARG 735
>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dcl-1
PE=2 SV=1
Length = 1584
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 22/82 (26%)
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----------ISSHAGSRRQEA 350
++ +I++ FK ++N +F + V + +DIP+ N++I+ I S +RR ++
Sbjct: 522 QQNRIIRKFKLG-EINCLFATSVAEEGLDIPDCNIVIRFDLYDTLIQCIQSRGRARRPDS 580
Query: 351 QRL-----------GRILRAKG 361
+ + RILRAKG
Sbjct: 581 RYIQMIEKGNYEHHSRILRAKG 602
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 238 NSKKKQALYVMNPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK----PM 292
NS Q + ++ P+ K R E ++R Q G K+++F + A L +
Sbjct: 366 NSAITQNVELITPSEKLRRLEQILR--SQDSGSKVLIFCTTKRMCDQLARTLTRQFGASA 423
Query: 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQR 352
I+G S ER K+L F+ R + + V +DI + V+I G R
Sbjct: 424 IHGDKSQSEREKVLSHFRSGRS-PILVATDVAARGLDIKDIRVVINYDFPTGI-EDYVHR 481
Query: 353 LGRILRA 359
+GR RA
Sbjct: 482 IGRTGRA 488
>sp|Q9R9I9|MYCC_BACIU Mycosubtilin synthase subunit C OS=Bacillus subtilis GN=mycC PE=3
SV=1
Length = 2609
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 24/103 (23%)
Query: 286 MKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGS 345
M++ K M+ HV+ IL S D ++ + K D + + P+ I Q+ +
Sbjct: 1738 MEIIKQMVNDTAVHVQELDIL-----SEDERSLLIEKFNDTATEYPKEKTIYQLFEEQAA 1792
Query: 346 RRQE-------------------AQRLGRILRAKGKLEDRMAG 369
R E A +L R LRAKG DR A
Sbjct: 1793 RTPEQIAIVFEDQKLTYRQLNEQANQLARTLRAKGVRSDRTAA 1835
>sp|A7TJI3|INO80_VANPO Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1
Length = 1556
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKS-----CLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + + T A ++ W QFK+
Sbjct: 820 NGILADEMGLGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISKFVPQFKILP 879
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D +I R D K R+ ++ V++T+Y MV ++ +W
Sbjct: 880 YWGNSNDRKILRRFWDRKNLRYNKDSPFHVMITSYQMVVSDTSY----------LQKMKW 929
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + + L I P L+++
Sbjct: 930 QYMILDEAQAIKSSQSSRWRNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDS 988
>sp|P35594|CLPE_STRPN ATP-dependent Clp protease ATP-binding subunit ClpE
OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=clpE PE=3 SV=2
Length = 752
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 17/140 (12%)
Query: 26 PRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAC--RIKKSCLCLATNAVS 80
P P QEK L + FG AR G I G ++ V R K + + + V
Sbjct: 104 PPPSQEKGLLEEFGINVTEIARRGDIDPVIGRDDEIIRVIEILNRRTKNNPVLIGEPGVG 163
Query: 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRS---EESEKI 137
+ A L I D D + +G + + ++V G R E +K+
Sbjct: 164 --KTAVVEGLAQKIVD-------GDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKL 214
Query: 138 IEEIRNREWGLLLMDEVHVV 157
+EEIR RE +L +DE+H +
Sbjct: 215 MEEIRKREDIILFIDEIHEI 234
>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP3 PE=3 SV=2
Length = 535
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 238 NSKKKQALYVMNPNKFRACEFLI----RFHEQQRGD-KIIVFA------DNLFALTEYAM 286
N + Q + V++ +KF+ + LI ++ GD KI+VFA + +L +
Sbjct: 340 NKRITQIVEVLD-DKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL-HRN 397
Query: 287 KLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSR 346
K + I+G S +RT+ LQ+FK S + N + + V +DIP +I + + +
Sbjct: 398 KFKVAAIHGDLSQQQRTQALQSFK-SGECNLLLATDVAARGLDIPNVKYVINL-TFPLTI 455
Query: 347 RQEAQRLGRILRA 359
RLGR RA
Sbjct: 456 EDYVHRLGRTGRA 468
>sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2
Length = 670
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 103/274 (37%), Gaps = 65/274 (23%)
Query: 118 VTTYNMVAFGGKRSEESEK------IIEEIRNREWGLLLMDEVHVVPAHMFR-------- 163
V TY ++ G RS E++K II R L+D + P M++
Sbjct: 279 VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGR-----LLDHMQNTPGFMYKNLQCLVID 333
Query: 164 ---------------KVISLTKSHCKLGL-TATLVREDERITDLNFLIGPKLYEANWLDL 207
++I L + + L +AT R+ E + ++ P LY D
Sbjct: 334 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP-LY-VGVDDD 391
Query: 208 VKGGFIANVQCAEVWCPMTKEFFS--EYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ ++ V CP K F +LKK N KKK ++ F +C +++H
Sbjct: 392 KANATVDGLEQGYVVCPSEKRFLLLFTFLKK-NRKKKLMVF------FSSC-MSVKYH-- 441
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
+ L Y + L I+G +RT F C+ D T+ + V
Sbjct: 442 -------------YELLNY-IDLPVLAIHGKQKQNKRTTTFFQF-CNADSGTLLCTDVAA 486
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+DIPE + I+Q ++ R+GR R
Sbjct: 487 RGLDIPEVDWIVQYDP-PDDPKEYIHRVGRTARG 519
>sp|Q6FV37|INO80_CANGA Putative DNA helicase INO80 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=INO80
PE=3 SV=1
Length = 1484
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK-----SCLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + + T A ++ W QFK+
Sbjct: 742 NGILADEMGLGKTVQSISVLAHLAEHHNIWGPFLVVTPASTLHNWVNEISKFVPQFKILP 801
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W + D ++ R D K R+ + V++T+Y MV ++ +W
Sbjct: 802 YWGSANDRKVLRKFWDRKNLRYSEKSPFHVMITSYQMVVADASY----------LQKMKW 851
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEA 202
+++DE + + + +L HC +L LT T ++ + + + L I P L+++
Sbjct: 852 QYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDS 910
>sp|Q6GZS1|055L_FRG3G Putative helicase 055L OS=Frog virus 3 (isolate Goorha) GN=FV3-055L
PE=4 SV=1
Length = 431
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPC--GAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RP+Q+ L + +G+ ++ G +L C G GK+ + + R+ L L V QW
Sbjct: 62 RPHQKGVLKEAWGHVTSK-GYCMLKCPPGFGKTFMALELWRRLGLPALVLTNRRVLATQW 120
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
D RF DS+ G ++ G S + +I +
Sbjct: 121 R-----------DSATRFLPDSRVFTSGTPPPDALPRDLYVTG-PASLRNRRIKAKDSPA 168
Query: 145 EWGLLLMDEVHVVPAHM-FRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
++ LL++DE H + + + R ++S+ SH LGL+AT +R D+ L G
Sbjct: 169 KF-LLIVDEAHQLTSPVSCRVLLSVRPSHL-LGLSATPMRYDDYHAALGAFFG 219
>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP3 PE=3 SV=1
Length = 564
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 251 NKF----RACEFLIRFHEQQRGD-KIIVFA---------DNLFALTEYAMKLRKPMIYGA 296
NKF + + L +++ + D KI++FA +N +++ I+G
Sbjct: 378 NKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSV----AAIHGD 433
Query: 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356
S +RT L AFK + N + + V +DIP V+I + + + R+GR
Sbjct: 434 LSQQQRTAALSAFKSGQS-NLLLATDVAARGLDIPNVKVVINL-TFPLTIEDYVHRIGRT 491
Query: 357 LRAKGK 362
RA K
Sbjct: 492 GRAGAK 497
>sp|Q6CNY4|INO80_KLULA Putative DNA helicase INO80 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=INO80 PE=3 SV=1
Length = 1489
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 31/180 (17%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKK-----SCLCLATNAVSVDQWAF-------QFKL-- 90
+GI+ G GK++ +S + + T A ++ W QFK+
Sbjct: 766 NGILADEMGLGKTVQSISVLAHLADRYNIWGPFIVVTPASTLHNWVNEISRFVPQFKILP 825
Query: 91 -WSTIQDDQICRFTSDSKE-RFRGNAG--VVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
W D + R D K R+ +A V+VT+Y MV ++ +W
Sbjct: 826 YWGNANDRKTLRKFWDRKHLRYGRDAPFHVMVTSYQMVVSDASY----------LQKMKW 875
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHC--KLGLTATLVRED-ERITDLNFLIGPKLYEAN 203
+++DE + + + +L HC +L LT T ++ + + + L I P L++++
Sbjct: 876 QYMILDEAQAIKSSQSSRWKTLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 935
>sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31
PE=1 SV=2
Length = 851
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 253 FRACEFLIRFHEQQRGDKIIVFADNLFA---------LTEYAMKLRKPMIYGATSHVERT 303
F +CE L+ FH +F L + L +M+L+ ++G ERT
Sbjct: 517 FSSCE-LVEFHYS-------LFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERT 568
Query: 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ Q F SR + + V +D+P+ I+Q ++ S + R+GR R
Sbjct: 569 AVFQEFSHSRR-GVLLCTDVAARGLDLPQVTWIVQYNA-PSSPAEYIHRIGRTAR 621
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,992,716
Number of Sequences: 539616
Number of extensions: 6129598
Number of successful extensions: 14789
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 14686
Number of HSP's gapped (non-prelim): 104
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)