Query 015196
Match_columns 411
No_of_seqs 153 out of 1663
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00603 rad25 DNA repair hel 100.0 4.6E-70 9.9E-75 527.1 41.6 400 1-409 231-631 (732)
2 KOG1123 RNA polymerase II tran 100.0 5.7E-71 1.2E-75 491.1 29.3 401 1-410 278-678 (776)
3 COG1061 SSL2 DNA or RNA helica 100.0 8.2E-51 1.8E-55 384.0 34.1 367 20-409 31-418 (442)
4 PHA02558 uvsW UvsW helicase; P 100.0 6.2E-46 1.3E-50 357.9 36.0 358 23-411 112-497 (501)
5 COG1111 MPH1 ERCC4-like helica 100.0 2.5E-41 5.5E-46 304.1 29.1 355 20-402 10-501 (542)
6 PTZ00110 helicase; Provisional 100.0 1.3E-36 2.8E-41 295.3 26.6 294 25-361 152-473 (545)
7 PRK11448 hsdR type I restricti 100.0 5.1E-37 1.1E-41 314.4 24.9 324 23-361 411-802 (1123)
8 TIGR00614 recQ_fam ATP-depende 100.0 5.8E-36 1.3E-40 287.4 30.1 284 25-361 11-322 (470)
9 PRK11192 ATP-dependent RNA hel 100.0 1.1E-36 2.4E-41 291.1 23.4 294 24-361 22-341 (434)
10 PRK10590 ATP-dependent RNA hel 100.0 1.2E-36 2.7E-41 291.2 23.3 292 24-361 22-341 (456)
11 PLN00206 DEAD-box ATP-dependen 100.0 7.3E-36 1.6E-40 289.2 27.6 293 25-361 143-464 (518)
12 PRK04837 ATP-dependent RNA hel 100.0 8.4E-37 1.8E-41 290.5 19.9 292 24-361 29-351 (423)
13 PRK11776 ATP-dependent RNA hel 100.0 5.6E-36 1.2E-40 288.0 24.1 290 25-361 26-338 (460)
14 PRK01297 ATP-dependent RNA hel 100.0 1.2E-35 2.7E-40 286.3 26.2 291 25-361 109-431 (475)
15 PTZ00424 helicase 45; Provisio 100.0 4.1E-36 8.8E-41 285.2 21.1 292 25-361 50-363 (401)
16 PRK04537 ATP-dependent RNA hel 100.0 4.9E-36 1.1E-40 292.1 22.0 293 24-361 30-353 (572)
17 PLN03142 Probable chromatin-re 100.0 2.4E-34 5.1E-39 289.5 34.4 344 24-395 168-609 (1033)
18 TIGR00580 mfd transcription-re 100.0 1.3E-34 2.9E-39 291.7 30.4 317 22-401 448-786 (926)
19 PRK11057 ATP-dependent DNA hel 100.0 1.7E-34 3.7E-39 284.3 29.2 282 25-361 25-332 (607)
20 PRK13766 Hef nuclease; Provisi 100.0 7.9E-34 1.7E-38 289.8 33.9 344 21-392 11-486 (773)
21 KOG0331 ATP-dependent RNA heli 100.0 7.8E-35 1.7E-39 269.0 22.7 297 24-361 112-437 (519)
22 PRK04914 ATP-dependent helicas 100.0 2.9E-33 6.2E-38 280.9 34.6 345 21-393 148-613 (956)
23 PRK11634 ATP-dependent RNA hel 100.0 2.2E-34 4.7E-39 282.1 25.0 292 24-361 27-341 (629)
24 TIGR03817 DECH_helic helicase/ 100.0 8.7E-34 1.9E-38 283.2 29.8 333 25-400 36-401 (742)
25 PRK10917 ATP-dependent DNA hel 100.0 1.1E-33 2.4E-38 281.3 30.3 291 22-361 258-578 (681)
26 COG4096 HsdR Type I site-speci 100.0 2.7E-35 5.9E-40 279.7 17.8 349 19-385 159-546 (875)
27 PRK02362 ski2-like helicase; P 100.0 4E-34 8.7E-39 288.6 27.0 300 24-361 22-384 (737)
28 TIGR00643 recG ATP-dependent D 100.0 1.3E-33 2.8E-38 279.3 28.5 290 23-361 233-555 (630)
29 KOG0330 ATP-dependent RNA heli 100.0 4.1E-34 9E-39 248.5 21.4 325 24-408 82-428 (476)
30 TIGR01389 recQ ATP-dependent D 100.0 3.7E-33 8.1E-38 275.7 29.4 285 25-361 13-320 (591)
31 PRK10689 transcription-repair 100.0 3.4E-33 7.4E-38 287.4 29.9 318 21-401 596-935 (1147)
32 PRK13767 ATP-dependent helicas 100.0 4.1E-33 8.8E-38 283.8 29.3 305 25-361 32-386 (876)
33 PLN03137 ATP-dependent DNA hel 100.0 3.4E-33 7.4E-38 278.0 27.9 291 24-361 459-776 (1195)
34 PRK00254 ski2-like helicase; P 100.0 9.7E-33 2.1E-37 277.9 26.7 297 24-361 22-375 (720)
35 KOG0354 DEAD-box like helicase 100.0 2.9E-32 6.2E-37 259.8 28.3 327 20-361 57-519 (746)
36 PRK01172 ski2-like helicase; P 100.0 2.3E-32 4.9E-37 274.1 26.3 297 22-361 19-365 (674)
37 TIGR00348 hsdR type I site-spe 100.0 2.2E-32 4.9E-37 270.8 25.5 333 23-364 236-640 (667)
38 COG0513 SrmB Superfamily II DN 100.0 2.7E-32 5.9E-37 262.5 22.7 294 24-361 50-369 (513)
39 COG1204 Superfamily II helicas 100.0 5.5E-32 1.2E-36 267.4 24.8 301 25-361 31-395 (766)
40 COG1197 Mfd Transcription-repa 100.0 4.1E-31 9E-36 261.6 29.8 327 18-407 587-938 (1139)
41 KOG0328 Predicted ATP-dependen 100.0 2.5E-32 5.5E-37 227.7 16.9 305 25-387 49-375 (400)
42 KOG0385 Chromatin remodeling c 100.0 4.3E-30 9.3E-35 240.8 29.6 345 23-396 165-610 (971)
43 COG1201 Lhr Lhr-like helicases 100.0 1.3E-30 2.8E-35 254.4 25.1 300 24-361 21-350 (814)
44 COG1200 RecG RecG-like helicas 100.0 2.5E-30 5.4E-35 243.1 24.7 315 23-402 260-606 (677)
45 KOG0333 U5 snRNP-like RNA heli 100.0 3E-30 6.6E-35 232.4 21.8 292 24-361 266-613 (673)
46 KOG0345 ATP-dependent RNA heli 100.0 7.4E-30 1.6E-34 227.2 21.0 293 25-361 28-353 (567)
47 KOG0387 Transcription-coupled 100.0 7.5E-29 1.6E-33 233.5 27.7 344 25-395 205-668 (923)
48 TIGR01587 cas3_core CRISPR-ass 100.0 7.9E-29 1.7E-33 231.5 26.1 293 46-385 2-338 (358)
49 KOG0335 ATP-dependent RNA heli 100.0 3.8E-30 8.3E-35 234.0 16.6 306 24-380 95-442 (482)
50 COG0514 RecQ Superfamily II DN 100.0 3.2E-28 6.9E-33 229.6 28.3 287 25-361 17-326 (590)
51 KOG0338 ATP-dependent RNA heli 100.0 1.8E-29 4E-34 226.6 18.7 295 24-361 202-522 (691)
52 KOG0390 DNA repair protein, SN 100.0 5.8E-28 1.3E-32 232.9 29.7 349 24-395 237-717 (776)
53 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-29 4.6E-34 225.8 17.2 314 24-361 158-529 (620)
54 KOG0343 RNA Helicase [RNA proc 100.0 2.5E-29 5.4E-34 227.8 17.6 293 24-361 90-411 (758)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.6E-28 1.2E-32 237.4 27.2 300 23-362 13-380 (844)
56 KOG0389 SNF2 family DNA-depend 100.0 1.7E-27 3.8E-32 224.1 29.1 355 16-396 390-899 (941)
57 COG4098 comFA Superfamily II D 100.0 1.2E-27 2.6E-32 205.4 25.5 329 19-408 91-439 (441)
58 COG1202 Superfamily II helicas 100.0 1.1E-28 2.3E-33 224.9 20.0 306 23-387 214-555 (830)
59 KOG0340 ATP-dependent RNA heli 100.0 8.4E-28 1.8E-32 207.0 24.1 301 24-361 28-350 (442)
60 KOG0342 ATP-dependent RNA heli 100.0 6.3E-29 1.4E-33 222.7 17.8 296 25-361 104-426 (543)
61 KOG0952 DNA/RNA helicase MER3/ 100.0 3.7E-28 8E-33 234.9 23.7 320 26-392 111-498 (1230)
62 KOG0348 ATP-dependent RNA heli 100.0 3.2E-29 7E-34 226.3 14.6 318 25-361 159-543 (708)
63 TIGR03158 cas3_cyano CRISPR-as 100.0 6.9E-28 1.5E-32 222.8 23.9 293 29-357 1-357 (357)
64 PRK09751 putative ATP-dependen 100.0 5.1E-28 1.1E-32 250.7 24.0 291 48-360 1-372 (1490)
65 KOG1015 Transcription regulato 100.0 7.5E-28 1.6E-32 229.6 21.6 368 24-410 667-1299(1567)
66 KOG0326 ATP-dependent RNA heli 100.0 9.9E-29 2.1E-33 209.8 13.3 288 25-361 107-418 (459)
67 KOG0332 ATP-dependent RNA heli 100.0 3.1E-27 6.7E-32 204.7 20.6 308 25-386 112-444 (477)
68 KOG0336 ATP-dependent RNA heli 100.0 5.5E-28 1.2E-32 211.7 15.9 292 25-361 242-561 (629)
69 KOG0392 SNF2 family DNA-depend 100.0 5.5E-27 1.2E-31 229.3 24.0 345 23-392 973-1461(1549)
70 KOG0384 Chromodomain-helicase 100.0 5.5E-27 1.2E-31 230.0 23.9 345 22-394 367-820 (1373)
71 PHA02653 RNA helicase NPH-II; 100.0 3.4E-26 7.3E-31 223.6 26.5 292 24-360 159-503 (675)
72 COG1205 Distinct helicase fami 99.9 4.8E-26 1E-30 228.6 26.3 333 24-400 69-437 (851)
73 KOG4284 DEAD box protein [Tran 99.9 3.9E-27 8.4E-32 217.2 15.3 297 25-361 47-368 (980)
74 COG4889 Predicted helicase [Ge 99.9 5E-27 1.1E-31 222.8 16.5 336 17-364 153-577 (1518)
75 TIGR00595 priA primosomal prot 99.9 8.5E-26 1.9E-30 216.4 25.2 303 47-407 1-413 (505)
76 PRK05580 primosome assembly pr 99.9 2.6E-25 5.7E-30 220.7 29.4 330 22-406 141-580 (679)
77 TIGR01970 DEAH_box_HrpB ATP-de 99.9 6.5E-25 1.4E-29 219.6 28.0 280 32-361 9-326 (819)
78 PRK11664 ATP-dependent RNA hel 99.9 8.7E-25 1.9E-29 219.2 27.2 282 31-361 11-329 (812)
79 PRK09401 reverse gyrase; Revie 99.9 4.7E-25 1E-29 228.0 25.9 282 23-360 78-432 (1176)
80 KOG0341 DEAD-box protein abstr 99.9 1.3E-26 2.9E-31 201.8 12.1 304 23-388 190-531 (610)
81 KOG0344 ATP-dependent RNA heli 99.9 2.1E-25 4.6E-30 204.7 18.8 295 25-361 158-484 (593)
82 KOG1000 Chromatin remodeling p 99.9 3E-24 6.6E-29 192.6 25.3 350 25-400 198-618 (689)
83 KOG0948 Nuclear exosomal RNA h 99.9 4.8E-26 1E-30 213.1 13.9 331 22-385 126-539 (1041)
84 KOG0347 RNA helicase [RNA proc 99.9 3.6E-26 7.9E-31 207.3 12.6 315 25-361 203-559 (731)
85 KOG0339 ATP-dependent RNA heli 99.9 1.2E-25 2.6E-30 202.0 15.7 306 24-388 244-578 (731)
86 KOG0947 Cytoplasmic exosomal R 99.9 2E-25 4.3E-30 213.9 17.5 320 20-362 292-711 (1248)
87 TIGR03714 secA2 accessory Sec 99.9 2E-24 4.3E-29 210.4 23.6 103 252-361 409-526 (762)
88 KOG0346 RNA helicase [RNA proc 99.9 4.2E-25 9.1E-30 195.4 14.9 295 25-361 41-399 (569)
89 KOG0951 RNA helicase BRR2, DEA 99.9 3E-24 6.4E-29 210.8 22.3 306 22-362 306-690 (1674)
90 COG0556 UvrB Helicase subunit 99.9 2.5E-23 5.5E-28 188.9 24.3 120 267-399 445-576 (663)
91 PRK09694 helicase Cas3; Provis 99.9 1E-23 2.2E-28 211.1 23.7 311 23-362 284-665 (878)
92 KOG0334 RNA helicase [RNA proc 99.9 2.7E-24 5.8E-29 209.7 17.2 306 25-384 387-719 (997)
93 KOG4439 RNA polymerase II tran 99.9 5.6E-23 1.2E-27 191.6 24.7 359 22-393 322-866 (901)
94 PRK09200 preprotein translocas 99.9 7.9E-23 1.7E-27 201.2 26.4 91 267-361 427-530 (790)
95 KOG0352 ATP-dependent DNA heli 99.9 1.7E-23 3.8E-28 184.6 19.0 297 27-361 22-351 (641)
96 TIGR00963 secA preprotein tran 99.9 2.2E-23 4.7E-28 201.9 21.4 328 24-361 53-506 (745)
97 COG4581 Superfamily II RNA hel 99.9 2.2E-23 4.8E-28 207.0 20.4 323 21-362 115-525 (1041)
98 PRK12898 secA preprotein trans 99.9 2.7E-22 5.8E-27 193.4 26.6 131 23-158 101-255 (656)
99 KOG0351 ATP-dependent DNA heli 99.9 1.6E-23 3.4E-28 209.2 18.2 293 24-361 263-581 (941)
100 PRK14701 reverse gyrase; Provi 99.9 5.2E-23 1.1E-27 217.4 22.5 282 23-361 77-445 (1638)
101 KOG0327 Translation initiation 99.9 1.2E-23 2.6E-28 183.9 14.6 290 25-361 48-359 (397)
102 KOG0353 ATP-dependent DNA heli 99.9 1.1E-22 2.4E-27 177.2 18.8 285 25-351 94-403 (695)
103 TIGR01054 rgy reverse gyrase. 99.9 1.8E-22 4E-27 209.2 23.4 264 23-342 76-408 (1171)
104 KOG0337 ATP-dependent RNA heli 99.9 3.3E-23 7.2E-28 182.6 13.4 304 25-387 43-370 (529)
105 PRK11131 ATP-dependent RNA hel 99.9 2.4E-21 5.2E-26 198.2 24.0 289 23-361 72-401 (1294)
106 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3E-21 6.6E-26 198.1 24.5 289 26-361 68-394 (1283)
107 PF04851 ResIII: Type III rest 99.9 4.3E-23 9.3E-28 174.5 9.0 160 23-183 1-184 (184)
108 KOG0388 SNF2 family DNA-depend 99.9 1.6E-20 3.6E-25 175.2 22.5 131 249-392 1026-1161(1185)
109 TIGR00631 uvrb excinuclease AB 99.9 9.7E-20 2.1E-24 179.0 27.3 102 256-360 432-542 (655)
110 KOG1002 Nucleotide excision re 99.9 2.7E-20 5.9E-25 167.4 21.1 356 24-393 183-757 (791)
111 COG1198 PriA Primosomal protei 99.9 7.9E-20 1.7E-24 178.1 25.5 350 23-408 196-636 (730)
112 COG1203 CRISPR-associated heli 99.9 2.1E-20 4.5E-25 187.6 20.6 321 25-389 195-556 (733)
113 KOG0386 Chromatin remodeling c 99.9 1.6E-20 3.5E-25 181.6 17.9 345 24-394 393-847 (1157)
114 KOG0950 DNA polymerase theta/e 99.9 1.1E-20 2.5E-25 182.5 16.6 311 24-362 222-599 (1008)
115 KOG0391 SNF2 family DNA-depend 99.9 1.3E-19 2.8E-24 176.9 22.7 143 251-406 1260-1413(1958)
116 COG0610 Type I site-specific r 99.8 3.7E-19 8.1E-24 181.8 23.3 329 26-363 249-640 (962)
117 PRK13104 secA preprotein trans 99.8 8.1E-19 1.8E-23 172.8 23.6 100 255-361 433-576 (896)
118 PRK12906 secA preprotein trans 99.8 7E-19 1.5E-23 172.3 22.1 92 266-361 438-542 (796)
119 PRK12904 preprotein translocas 99.8 1.4E-18 3.1E-23 170.9 23.8 129 26-158 80-214 (830)
120 PRK05298 excinuclease ABC subu 99.8 1.2E-16 2.5E-21 158.6 30.8 103 255-360 435-546 (652)
121 KOG0949 Predicted helicase, DE 99.8 3.8E-17 8.2E-22 158.0 20.5 158 24-190 510-680 (1330)
122 cd00268 DEADc DEAD-box helicas 99.8 3.9E-18 8.5E-23 146.4 12.5 148 25-183 21-186 (203)
123 KOG0329 ATP-dependent RNA heli 99.8 1.7E-18 3.7E-23 143.3 9.6 262 26-361 65-344 (387)
124 PRK13107 preprotein translocas 99.8 6E-17 1.3E-21 159.3 22.0 111 254-381 437-590 (908)
125 PF00270 DEAD: DEAD/DEAH box h 99.8 9.4E-18 2E-22 139.7 13.7 145 27-182 1-163 (169)
126 COG0553 HepA Superfamily II DN 99.8 1.3E-16 2.9E-21 166.7 23.4 350 24-397 337-834 (866)
127 COG1643 HrpA HrpA-like helicas 99.7 6E-16 1.3E-20 153.4 22.8 299 25-385 50-387 (845)
128 TIGR01407 dinG_rel DnaQ family 99.7 1.2E-15 2.6E-20 156.6 24.7 104 255-361 662-803 (850)
129 KOG1016 Predicted DNA helicase 99.7 7E-17 1.5E-21 152.5 13.8 130 266-410 717-871 (1387)
130 KOG0349 Putative DEAD-box RNA 99.7 4.7E-17 1E-21 144.6 11.9 276 70-361 288-604 (725)
131 KOG0922 DEAH-box RNA helicase 99.7 1.4E-15 2.9E-20 142.9 20.4 287 27-362 53-381 (674)
132 PRK12899 secA preprotein trans 99.7 4.3E-15 9.2E-20 146.7 23.7 132 23-158 90-228 (970)
133 PF00176 SNF2_N: SNF2 family N 99.7 1.1E-16 2.4E-21 146.2 11.7 153 29-187 1-178 (299)
134 smart00487 DEXDc DEAD-like hel 99.7 3E-16 6.4E-21 134.2 12.5 152 23-184 6-173 (201)
135 PRK15483 type III restriction- 99.7 6.3E-14 1.4E-18 139.9 29.8 170 45-218 61-278 (986)
136 cd00046 DEXDc DEAD-like helica 99.7 2.5E-16 5.5E-21 126.8 9.9 128 45-181 2-144 (144)
137 PRK12900 secA preprotein trans 99.6 2.5E-14 5.3E-19 141.8 22.3 105 252-361 583-700 (1025)
138 PRK12326 preprotein translocas 99.6 4.9E-14 1.1E-18 135.9 23.3 129 24-158 77-211 (764)
139 PRK13103 secA preprotein trans 99.6 4.3E-14 9.3E-19 139.5 20.5 129 26-158 81-215 (913)
140 COG1110 Reverse gyrase [DNA re 99.6 9.5E-14 2.1E-18 136.1 22.2 261 23-340 80-414 (1187)
141 cd00079 HELICc Helicase superf 99.6 5.7E-15 1.2E-19 117.3 11.2 106 253-361 14-124 (131)
142 KOG0920 ATP-dependent RNA heli 99.6 5.6E-14 1.2E-18 139.2 20.0 306 24-361 172-534 (924)
143 KOG0924 mRNA splicing factor A 99.6 3.9E-14 8.4E-19 132.8 17.7 286 45-390 373-702 (1042)
144 PRK07246 bifunctional ATP-depe 99.6 3.1E-13 6.6E-18 137.2 25.0 68 22-89 242-313 (820)
145 KOG0923 mRNA splicing factor A 99.6 4.2E-14 9E-19 132.2 16.0 290 24-362 264-597 (902)
146 KOG0953 Mitochondrial RNA heli 99.6 5.3E-14 1.2E-18 129.1 16.2 252 48-364 196-466 (700)
147 PF00271 Helicase_C: Helicase 99.6 6.4E-15 1.4E-19 105.3 6.0 70 289-360 9-78 (78)
148 TIGR02562 cas3_yersinia CRISPR 99.5 1.2E-12 2.6E-17 130.6 22.5 89 272-364 760-884 (1110)
149 PRK12903 secA preprotein trans 99.5 2.1E-12 4.5E-17 126.6 21.4 124 26-158 77-211 (925)
150 COG3421 Uncharacterized protei 99.5 2.9E-13 6.4E-18 125.4 14.0 169 48-220 2-201 (812)
151 KOG0926 DEAH-box RNA helicase 99.5 5.7E-13 1.2E-17 127.2 16.3 138 32-185 263-428 (1172)
152 PRK08074 bifunctional ATP-depe 99.5 1.4E-11 3E-16 127.5 24.7 105 255-361 740-882 (928)
153 KOG1001 Helicase-like transcri 99.5 7.5E-13 1.6E-17 129.5 14.1 112 269-392 540-657 (674)
154 PRK14873 primosome assembly pr 99.4 2.9E-11 6.3E-16 119.3 24.0 122 45-183 162-305 (665)
155 COG3587 Restriction endonuclea 99.4 1.3E-11 2.8E-16 119.1 17.2 139 43-183 74-244 (985)
156 smart00490 HELICc helicase sup 99.4 1.2E-12 2.5E-17 94.6 7.6 70 289-360 13-82 (82)
157 CHL00122 secA preprotein trans 99.4 8.9E-11 1.9E-15 115.9 22.7 124 24-158 75-209 (870)
158 PRK12902 secA preprotein trans 99.4 1.6E-10 3.4E-15 114.1 23.3 127 25-158 83-218 (939)
159 KOG0951 RNA helicase BRR2, DEA 99.4 4E-11 8.7E-16 119.8 19.2 288 27-361 1145-1486(1674)
160 COG1199 DinG Rad3-related DNA 99.4 5.2E-11 1.1E-15 120.2 19.3 68 22-89 12-84 (654)
161 KOG4150 Predicted ATP-dependen 99.3 2.5E-11 5.4E-16 112.1 13.6 325 25-401 286-656 (1034)
162 PF07652 Flavi_DEAD: Flaviviru 99.3 1.4E-11 3.1E-16 95.2 9.2 125 45-184 6-139 (148)
163 PF13872 AAA_34: P-loop contai 99.3 4.7E-10 1E-14 98.0 16.8 164 22-186 34-225 (303)
164 PF02399 Herpes_ori_bp: Origin 99.2 1.8E-09 3.8E-14 105.7 21.3 292 44-361 50-378 (824)
165 PRK12901 secA preprotein trans 99.2 3.8E-09 8.3E-14 105.7 22.1 128 24-158 166-303 (1112)
166 KOG0925 mRNA splicing factor A 99.1 2E-09 4.4E-14 98.0 15.5 279 30-363 51-379 (699)
167 smart00489 DEXDc3 DEAD-like he 99.0 5.6E-09 1.2E-13 93.8 12.4 71 21-91 4-84 (289)
168 smart00488 DEXDc2 DEAD-like he 99.0 5.6E-09 1.2E-13 93.8 12.4 71 21-91 4-84 (289)
169 TIGR03117 cas_csf4 CRISPR-asso 98.8 1.7E-08 3.7E-13 98.7 9.7 104 255-361 458-603 (636)
170 PF13086 AAA_11: AAA domain; P 98.7 1.1E-07 2.4E-12 83.3 11.4 63 25-90 1-75 (236)
171 PRK11747 dinG ATP-dependent DN 98.7 5.5E-08 1.2E-12 97.9 10.0 64 22-85 22-95 (697)
172 TIGR00596 rad1 DNA repair prot 98.7 1.3E-06 2.8E-11 88.2 17.7 64 113-184 7-75 (814)
173 PF02562 PhoH: PhoH-like prote 98.7 2.3E-07 5.1E-12 77.8 10.3 142 26-186 5-160 (205)
174 KOG1513 Nuclear helicase MOP-3 98.6 4.2E-06 9.1E-11 81.1 19.2 161 22-185 261-458 (1300)
175 KOG1802 RNA helicase nonsense 98.6 3.1E-07 6.6E-12 87.1 10.5 65 24-91 409-477 (935)
176 COG0653 SecA Preprotein transl 98.6 2E-06 4.4E-11 85.3 16.2 128 24-158 77-213 (822)
177 KOG1803 DNA helicase [Replicat 98.5 6.6E-07 1.4E-11 84.4 9.2 64 24-89 184-250 (649)
178 TIGR00604 rad3 DNA repair heli 98.5 1.6E-06 3.6E-11 88.0 12.7 68 23-90 7-82 (705)
179 PF13604 AAA_30: AAA domain; P 98.4 2E-06 4.4E-11 72.8 10.8 127 25-182 1-131 (196)
180 PF07517 SecA_DEAD: SecA DEAD- 98.4 3.5E-07 7.5E-12 80.1 6.0 125 23-158 75-210 (266)
181 PF13401 AAA_22: AAA domain; P 98.3 6.3E-06 1.4E-10 65.0 8.9 111 44-182 5-126 (131)
182 PRK10536 hypothetical protein; 98.2 3E-06 6.6E-11 73.2 6.9 137 26-186 60-217 (262)
183 KOG0383 Predicted helicase [Ge 98.2 1E-06 2.2E-11 86.1 3.8 288 24-327 294-696 (696)
184 PF09848 DUF2075: Uncharacteri 98.2 5.7E-06 1.2E-10 77.0 8.1 47 45-91 3-54 (352)
185 COG2256 MGS1 ATPase related to 98.2 2.5E-05 5.3E-10 70.8 11.5 104 35-184 40-143 (436)
186 PF13307 Helicase_C_2: Helicas 98.2 1.8E-05 3.8E-10 65.2 9.9 92 267-361 8-139 (167)
187 PF13245 AAA_19: Part of AAA d 98.1 8.5E-06 1.8E-10 57.0 6.5 44 45-88 12-62 (76)
188 PF12340 DUF3638: Protein of u 98.1 1.6E-05 3.4E-10 67.4 9.1 145 16-163 14-190 (229)
189 TIGR01447 recD exodeoxyribonuc 98.1 1.9E-05 4.1E-10 77.8 11.1 140 28-181 148-295 (586)
190 TIGR00376 DNA helicase, putati 98.1 1E-05 2.2E-10 80.7 9.2 65 24-90 156-223 (637)
191 TIGR01448 recD_rel helicase, p 98.1 6.1E-05 1.3E-09 76.4 14.4 128 22-181 320-452 (720)
192 PRK10875 recD exonuclease V su 98.0 4E-05 8.6E-10 75.7 10.5 142 26-181 153-301 (615)
193 KOG0298 DEAD box-containing he 97.9 2.3E-05 5E-10 80.0 6.8 137 45-184 376-553 (1394)
194 cd00009 AAA The AAA+ (ATPases 97.9 0.00029 6.2E-09 56.4 12.2 48 30-77 6-56 (151)
195 PF05496 RuvB_N: Holliday junc 97.9 0.00011 2.4E-09 62.1 9.6 33 43-75 50-82 (233)
196 KOG1805 DNA replication helica 97.9 8.8E-05 1.9E-09 74.0 10.1 121 25-160 669-811 (1100)
197 COG1875 NYN ribonuclease and A 97.8 0.00043 9.3E-09 62.1 12.4 144 23-187 225-393 (436)
198 PRK13342 recombination factor 97.8 0.00035 7.5E-09 66.6 12.1 103 34-182 27-129 (413)
199 PRK04296 thymidine kinase; Pro 97.7 0.00017 3.7E-09 60.8 8.3 32 45-76 4-38 (190)
200 KOG1132 Helicase of the DEAD s 97.7 0.00019 4.1E-09 71.1 8.8 44 18-61 14-58 (945)
201 smart00382 AAA ATPases associa 97.7 0.00023 4.9E-09 56.6 7.9 36 44-79 3-41 (148)
202 PF13871 Helicase_C_4: Helicas 97.6 0.00033 7.2E-09 61.5 9.3 88 304-404 52-147 (278)
203 KOG2028 ATPase related to the 97.6 0.00046 1E-08 61.8 9.4 105 35-184 154-261 (554)
204 KOG0989 Replication factor C, 97.6 0.00015 3.3E-09 63.4 6.2 41 29-69 40-83 (346)
205 KOG0952 DNA/RNA helicase MER3/ 97.6 0.0001 2.2E-09 74.1 5.5 111 44-160 944-1061(1230)
206 PF06862 DUF1253: Protein of u 97.5 0.0069 1.5E-07 57.0 16.6 93 266-360 298-397 (442)
207 PRK13341 recombination factor 97.5 0.00069 1.5E-08 68.4 10.5 38 145-182 109-146 (725)
208 PF00580 UvrD-helicase: UvrD/R 97.5 0.00027 5.8E-09 64.9 6.8 94 26-126 1-102 (315)
209 TIGR03015 pepcterm_ATPase puta 97.5 0.0016 3.5E-08 58.2 11.7 45 24-68 22-68 (269)
210 TIGR02768 TraA_Ti Ti-type conj 97.5 0.00091 2E-08 68.3 11.0 122 22-179 349-474 (744)
211 PF00004 AAA: ATPase family as 97.4 0.0019 4E-08 50.7 9.9 33 46-78 1-33 (132)
212 PRK13826 Dtr system oriT relax 97.3 0.022 4.7E-07 60.0 19.1 124 22-181 378-505 (1102)
213 TIGR02881 spore_V_K stage V sp 97.3 0.0013 2.7E-08 58.6 8.8 23 44-66 43-65 (261)
214 PRK06526 transposase; Provisio 97.3 0.00083 1.8E-08 59.2 7.4 31 44-74 99-132 (254)
215 PF05970 PIF1: PIF1-like helic 97.3 0.0011 2.4E-08 61.9 8.6 114 25-165 1-122 (364)
216 PRK13889 conjugal transfer rel 97.3 0.0016 3.4E-08 67.8 10.2 123 23-181 344-470 (988)
217 PF00448 SRP54: SRP54-type pro 97.3 0.0048 1E-07 52.1 11.3 115 44-183 2-127 (196)
218 PRK14956 DNA polymerase III su 97.2 0.0026 5.6E-08 60.6 10.3 38 144-181 120-159 (484)
219 PLN03025 replication factor C 97.2 0.0028 6.1E-08 58.2 10.5 40 28-67 19-58 (319)
220 PRK14962 DNA polymerase III su 97.2 0.0029 6.3E-08 60.9 10.7 41 28-68 20-61 (472)
221 PRK05707 DNA polymerase III su 97.2 0.0037 8E-08 57.3 10.8 43 25-67 3-46 (328)
222 KOG1131 RNA polymerase II tran 97.2 0.0062 1.3E-07 57.2 12.0 38 25-64 16-56 (755)
223 PHA02533 17 large terminase pr 97.2 0.0084 1.8E-07 58.6 13.6 142 23-182 57-210 (534)
224 PRK12323 DNA polymerase III su 97.1 0.0039 8.5E-08 61.3 10.8 38 31-68 25-63 (700)
225 PHA02544 44 clamp loader, smal 97.1 0.0056 1.2E-07 56.2 11.6 51 27-77 26-77 (316)
226 PRK10919 ATP-dependent DNA hel 97.1 0.001 2.3E-08 67.3 7.2 64 25-93 2-72 (672)
227 PRK12723 flagellar biosynthesi 97.1 0.0063 1.4E-07 56.9 11.5 110 43-183 174-299 (388)
228 COG0542 clpA ATP-binding subun 97.1 0.0051 1.1E-07 61.7 11.4 110 30-171 496-619 (786)
229 COG1222 RPT1 ATP-dependent 26S 97.0 0.0024 5.1E-08 57.4 7.5 55 27-82 156-223 (406)
230 PRK11747 dinG ATP-dependent DN 97.0 0.0052 1.1E-07 62.5 11.0 101 255-361 523-663 (697)
231 PRK08181 transposase; Validate 97.0 0.013 2.9E-07 52.0 12.2 56 25-83 87-148 (269)
232 PRK07003 DNA polymerase III su 97.0 0.0076 1.6E-07 60.3 11.6 36 33-68 27-63 (830)
233 PF02456 Adeno_IVa2: Adenoviru 97.0 0.0011 2.4E-08 58.1 5.1 105 45-156 89-207 (369)
234 cd01124 KaiC KaiC is a circadi 97.0 0.01 2.2E-07 49.8 11.0 45 46-91 2-49 (187)
235 PRK14958 DNA polymerase III su 97.0 0.0074 1.6E-07 58.8 11.3 37 32-68 26-63 (509)
236 PRK11034 clpA ATP-dependent Cl 97.0 0.0043 9.2E-08 63.2 9.9 93 44-169 489-581 (758)
237 PRK14949 DNA polymerase III su 97.0 0.0046 9.9E-08 62.9 9.7 35 34-68 28-63 (944)
238 PRK11054 helD DNA helicase IV; 96.9 0.0014 3E-08 66.0 6.0 74 24-102 195-275 (684)
239 PRK14960 DNA polymerase III su 96.9 0.0081 1.8E-07 59.3 10.7 40 29-68 22-62 (702)
240 KOG0921 Dosage compensation co 96.9 0.0088 1.9E-07 59.8 10.7 107 254-361 628-764 (1282)
241 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0081 1.8E-07 52.2 9.6 35 33-67 28-62 (226)
242 PRK07952 DNA replication prote 96.9 0.019 4.1E-07 50.2 11.6 47 28-74 79-133 (244)
243 PRK12402 replication factor C 96.8 0.018 4E-07 53.4 12.3 42 27-68 20-61 (337)
244 PRK08727 hypothetical protein; 96.8 0.025 5.4E-07 49.4 12.3 32 44-75 42-76 (233)
245 PRK04195 replication factor C 96.8 0.016 3.5E-07 56.5 12.1 51 26-76 18-72 (482)
246 PRK08084 DNA replication initi 96.8 0.013 2.9E-07 51.1 10.4 39 37-75 39-80 (235)
247 KOG0739 AAA+-type ATPase [Post 96.8 0.012 2.6E-07 51.6 9.7 47 43-90 166-212 (439)
248 PRK14712 conjugal transfer nic 96.8 0.06 1.3E-06 58.8 17.0 122 24-177 834-964 (1623)
249 TIGR02760 TraI_TIGR conjugativ 96.8 0.013 2.7E-07 66.1 12.5 133 23-178 427-564 (1960)
250 PHA03368 DNA packaging termina 96.8 0.017 3.6E-07 56.7 11.7 125 43-181 254-390 (738)
251 KOG2340 Uncharacterized conser 96.8 0.042 9.1E-07 52.0 13.5 92 268-361 552-653 (698)
252 PF01443 Viral_helicase1: Vira 96.8 0.0038 8.2E-08 54.6 6.6 98 46-182 1-98 (234)
253 PRK13709 conjugal transfer nic 96.8 0.074 1.6E-06 58.9 17.3 122 24-177 966-1096(1747)
254 PF05621 TniB: Bacterial TniB 96.8 0.009 1.9E-07 53.1 8.7 111 22-160 34-160 (302)
255 TIGR02639 ClpA ATP-dependent C 96.7 0.01 2.3E-07 60.8 10.6 41 27-67 187-227 (731)
256 PRK08116 hypothetical protein; 96.7 0.033 7.2E-07 49.6 12.4 41 45-86 116-159 (268)
257 PRK07994 DNA polymerase III su 96.7 0.011 2.4E-07 58.8 10.1 37 32-68 26-63 (647)
258 PRK12377 putative replication 96.7 0.023 5E-07 49.8 11.0 42 44-86 102-146 (248)
259 PRK14963 DNA polymerase III su 96.7 0.018 3.9E-07 56.0 11.3 39 30-68 19-61 (504)
260 TIGR00635 ruvB Holliday juncti 96.7 0.015 3.2E-07 53.2 10.3 28 43-70 30-57 (305)
261 smart00492 HELICc3 helicase su 96.7 0.0093 2E-07 47.3 7.6 69 293-361 27-127 (141)
262 TIGR00604 rad3 DNA repair heli 96.7 0.032 7E-07 57.1 13.5 102 259-361 514-663 (705)
263 KOG0298 DEAD box-containing he 96.7 0.0033 7.1E-08 65.0 6.0 109 267-392 1220-1333(1394)
264 PRK00080 ruvB Holliday junctio 96.6 0.02 4.4E-07 52.8 10.8 46 26-71 29-79 (328)
265 PRK14969 DNA polymerase III su 96.6 0.026 5.6E-07 55.4 12.0 39 30-68 24-63 (527)
266 PHA03333 putative ATPase subun 96.6 0.048 1E-06 53.9 13.5 141 25-180 169-331 (752)
267 TIGR01074 rep ATP-dependent DN 96.6 0.0042 9.2E-08 63.3 6.8 64 26-94 2-72 (664)
268 PRK14961 DNA polymerase III su 96.6 0.028 6E-07 52.7 11.5 39 30-68 21-63 (363)
269 cd01120 RecA-like_NTPases RecA 96.6 0.011 2.4E-07 48.1 8.0 36 46-81 2-40 (165)
270 PF13173 AAA_14: AAA domain 96.6 0.023 5E-07 44.4 9.3 32 44-75 3-36 (128)
271 TIGR02928 orc1/cdc6 family rep 96.6 0.026 5.6E-07 53.0 11.3 45 23-67 16-64 (365)
272 PRK03992 proteasome-activating 96.6 0.014 3E-07 55.2 9.3 35 42-76 164-198 (389)
273 PRK14951 DNA polymerase III su 96.6 0.021 4.5E-07 56.7 10.8 35 34-68 28-63 (618)
274 COG2255 RuvB Holliday junction 96.6 0.011 2.3E-07 51.7 7.7 31 42-72 51-81 (332)
275 smart00491 HELICc2 helicase su 96.6 0.013 2.8E-07 46.6 7.7 60 301-361 32-128 (142)
276 PRK06921 hypothetical protein; 96.6 0.014 3.1E-07 51.8 8.9 39 44-83 118-160 (266)
277 PRK07940 DNA polymerase III su 96.6 0.024 5.2E-07 53.3 10.7 25 43-67 36-60 (394)
278 PRK14959 DNA polymerase III su 96.6 0.023 4.9E-07 56.2 10.9 38 31-68 25-63 (624)
279 PRK06645 DNA polymerase III su 96.5 0.02 4.3E-07 55.6 10.4 39 30-68 26-68 (507)
280 CHL00181 cbbX CbbX; Provisiona 96.5 0.016 3.6E-07 52.1 9.2 22 45-66 61-82 (287)
281 PRK14964 DNA polymerase III su 96.5 0.017 3.8E-07 55.6 9.7 37 31-67 22-59 (491)
282 COG1474 CDC6 Cdc6-related prot 96.5 0.024 5.2E-07 52.8 10.4 48 21-68 16-67 (366)
283 PRK06964 DNA polymerase III su 96.5 0.035 7.5E-07 51.1 11.1 42 26-67 2-45 (342)
284 TIGR02639 ClpA ATP-dependent C 96.5 0.02 4.3E-07 58.9 10.6 93 45-170 486-578 (731)
285 PF13177 DNA_pol3_delta2: DNA 96.5 0.083 1.8E-06 43.1 12.2 38 30-67 2-43 (162)
286 PRK14952 DNA polymerase III su 96.5 0.034 7.3E-07 55.0 11.5 38 31-68 22-60 (584)
287 PF05876 Terminase_GpA: Phage 96.4 0.024 5.1E-07 56.1 10.3 150 21-185 12-183 (557)
288 PRK14955 DNA polymerase III su 96.4 0.031 6.7E-07 53.0 10.8 37 32-68 26-63 (397)
289 PF06745 KaiC: KaiC; InterPro 96.4 0.032 6.9E-07 48.5 10.0 57 34-91 8-70 (226)
290 TIGR03345 VI_ClpV1 type VI sec 96.4 0.02 4.2E-07 59.6 9.9 93 45-169 598-692 (852)
291 PRK06893 DNA replication initi 96.4 0.032 7E-07 48.5 9.9 31 45-75 41-74 (229)
292 PRK07764 DNA polymerase III su 96.4 0.031 6.7E-07 57.6 11.1 39 30-68 23-62 (824)
293 PTZ00454 26S protease regulato 96.4 0.015 3.2E-07 54.8 8.2 35 42-76 178-212 (398)
294 PRK06871 DNA polymerase III su 96.4 0.046 1E-06 49.9 11.0 43 25-67 2-48 (325)
295 PRK11773 uvrD DNA-dependent he 96.3 0.009 2E-07 61.3 7.1 65 25-94 9-80 (721)
296 KOG0733 Nuclear AAA ATPase (VC 96.3 0.017 3.6E-07 55.7 8.1 35 42-76 222-256 (802)
297 PRK00411 cdc6 cell division co 96.3 0.099 2.2E-06 49.7 13.8 47 21-67 29-79 (394)
298 PRK00440 rfc replication facto 96.3 0.076 1.6E-06 48.8 12.4 41 27-67 22-62 (319)
299 cd01121 Sms Sms (bacterial rad 96.3 0.048 1E-06 50.9 10.9 98 32-158 69-171 (372)
300 COG2804 PulE Type II secretory 96.3 0.035 7.6E-07 52.7 10.0 43 25-68 241-283 (500)
301 PRK08691 DNA polymerase III su 96.3 0.045 9.8E-07 54.6 11.1 36 33-68 27-63 (709)
302 PRK14974 cell division protein 96.2 0.065 1.4E-06 49.2 11.3 45 44-88 141-191 (336)
303 TIGR01075 uvrD DNA helicase II 96.2 0.0092 2E-07 61.3 6.6 64 25-93 4-74 (715)
304 TIGR01242 26Sp45 26S proteasom 96.2 0.017 3.8E-07 54.1 7.8 33 43-75 156-188 (364)
305 PRK00149 dnaA chromosomal repl 96.2 0.054 1.2E-06 52.4 11.3 40 44-84 149-193 (450)
306 TIGR02880 cbbX_cfxQ probable R 96.2 0.019 4.1E-07 51.7 7.7 22 44-65 59-80 (284)
307 TIGR02760 TraI_TIGR conjugativ 96.2 0.029 6.4E-07 63.3 10.6 114 22-169 1016-1136(1960)
308 CHL00095 clpC Clp protease ATP 96.2 0.035 7.7E-07 57.8 10.6 41 27-67 184-224 (821)
309 PRK05642 DNA replication initi 96.2 0.065 1.4E-06 46.8 10.7 32 44-75 46-80 (234)
310 TIGR00678 holB DNA polymerase 96.2 0.073 1.6E-06 44.7 10.7 27 42-68 13-39 (188)
311 TIGR00362 DnaA chromosomal rep 96.2 0.071 1.5E-06 50.8 11.8 32 44-75 137-173 (405)
312 PRK14957 DNA polymerase III su 96.2 0.051 1.1E-06 53.2 10.9 35 34-68 28-63 (546)
313 PRK08533 flagellar accessory p 96.1 0.038 8.2E-07 48.1 8.9 46 44-90 25-73 (230)
314 PTZ00112 origin recognition co 96.1 0.076 1.7E-06 54.1 11.9 46 22-67 755-805 (1164)
315 PRK11889 flhF flagellar biosyn 96.1 0.087 1.9E-06 49.0 11.4 43 44-86 242-290 (436)
316 TIGR03117 cas_csf4 CRISPR-asso 96.1 0.12 2.5E-06 51.6 13.1 63 30-92 2-70 (636)
317 PRK05563 DNA polymerase III su 96.1 0.083 1.8E-06 52.3 12.1 41 28-68 22-63 (559)
318 PRK11823 DNA repair protein Ra 96.1 0.064 1.4E-06 51.5 11.0 98 32-158 67-169 (446)
319 COG4626 Phage terminase-like p 96.1 0.09 2E-06 50.5 11.6 69 22-90 58-140 (546)
320 PRK10865 protein disaggregatio 96.0 0.035 7.6E-07 57.9 9.7 38 30-67 183-223 (857)
321 PRK08769 DNA polymerase III su 96.0 0.078 1.7E-06 48.3 10.7 43 25-67 4-50 (319)
322 CHL00095 clpC Clp protease ATP 96.0 0.032 7E-07 58.1 9.2 24 45-68 541-564 (821)
323 PRK14965 DNA polymerase III su 96.0 0.079 1.7E-06 52.7 11.5 41 28-68 22-63 (576)
324 PRK06090 DNA polymerase III su 96.0 0.094 2E-06 47.8 10.9 44 24-67 2-49 (319)
325 PF00308 Bac_DnaA: Bacterial d 95.9 0.25 5.4E-06 42.6 13.0 33 44-76 35-72 (219)
326 KOG0734 AAA+-type ATPase conta 95.9 0.042 9.2E-07 52.2 8.5 37 40-76 334-370 (752)
327 PRK14087 dnaA chromosomal repl 95.9 0.098 2.1E-06 50.4 11.4 44 44-88 142-190 (450)
328 PF03354 Terminase_1: Phage Te 95.9 0.11 2.3E-06 50.7 11.8 133 28-169 1-148 (477)
329 KOG0729 26S proteasome regulat 95.9 0.048 1E-06 47.1 8.1 41 42-83 210-250 (435)
330 TIGR01547 phage_term_2 phage t 95.9 0.05 1.1E-06 51.7 9.3 128 45-184 3-143 (396)
331 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.14 3.1E-06 44.8 11.4 59 32-91 8-71 (237)
332 PF00265 TK: Thymidine kinase; 95.9 0.018 3.8E-07 47.7 5.3 34 46-79 4-40 (176)
333 TIGR01241 FtsH_fam ATP-depende 95.8 0.052 1.1E-06 53.2 9.4 34 42-75 87-120 (495)
334 PRK09112 DNA polymerase III su 95.8 0.18 3.9E-06 46.8 12.4 26 43-68 45-70 (351)
335 KOG0727 26S proteasome regulat 95.8 0.039 8.5E-07 47.3 7.2 50 27-76 160-222 (408)
336 COG0464 SpoVK ATPases of the A 95.8 0.028 6E-07 55.2 7.4 48 42-90 275-322 (494)
337 PRK08939 primosomal protein Dn 95.8 0.11 2.3E-06 47.3 10.6 32 44-75 157-191 (306)
338 PRK07993 DNA polymerase III su 95.8 0.09 1.9E-06 48.4 10.2 43 25-67 2-48 (334)
339 PRK09111 DNA polymerase III su 95.8 0.09 1.9E-06 52.3 10.8 37 32-68 34-71 (598)
340 PRK08903 DnaA regulatory inact 95.8 0.14 3.1E-06 44.4 11.0 46 30-75 28-77 (227)
341 TIGR03689 pup_AAA proteasome A 95.8 0.03 6.4E-07 54.3 7.2 29 42-70 215-243 (512)
342 cd00544 CobU Adenosylcobinamid 95.7 0.14 3E-06 42.1 10.1 47 46-92 2-48 (169)
343 PRK14948 DNA polymerase III su 95.7 0.11 2.5E-06 51.9 11.4 39 30-68 21-63 (620)
344 TIGR01073 pcrA ATP-dependent D 95.7 0.022 4.9E-07 58.6 6.7 64 25-93 4-74 (726)
345 CHL00176 ftsH cell division pr 95.7 0.077 1.7E-06 53.2 10.2 33 43-75 216-248 (638)
346 TIGR02640 gas_vesic_GvpN gas v 95.7 0.035 7.6E-07 49.4 7.0 53 26-78 3-56 (262)
347 PRK10865 protein disaggregatio 95.7 0.061 1.3E-06 56.1 9.6 93 45-169 600-694 (857)
348 COG1219 ClpX ATP-dependent pro 95.7 0.013 2.8E-07 51.9 4.0 36 44-80 98-133 (408)
349 TIGR01243 CDC48 AAA family ATP 95.7 0.035 7.6E-07 57.2 7.8 35 42-76 486-520 (733)
350 PRK05896 DNA polymerase III su 95.6 0.12 2.6E-06 51.0 10.8 41 28-68 22-63 (605)
351 TIGR03346 chaperone_ClpB ATP-d 95.6 0.095 2.1E-06 54.9 10.7 38 30-67 178-218 (852)
352 PRK13833 conjugal transfer pro 95.6 0.038 8.2E-07 50.4 6.7 55 24-80 127-186 (323)
353 PRK14953 DNA polymerase III su 95.6 0.18 3.8E-06 49.1 11.7 39 30-68 21-63 (486)
354 PRK14722 flhF flagellar biosyn 95.6 0.21 4.6E-06 46.4 11.7 32 44-75 138-174 (374)
355 PRK14950 DNA polymerase III su 95.5 0.15 3.1E-06 51.1 11.4 24 45-68 40-63 (585)
356 PRK11034 clpA ATP-dependent Cl 95.5 0.091 2E-06 53.8 10.0 24 42-65 206-229 (758)
357 KOG0737 AAA+-type ATPase [Post 95.5 0.062 1.3E-06 48.8 7.6 49 42-91 126-174 (386)
358 PRK08699 DNA polymerase III su 95.5 0.2 4.3E-06 46.0 11.2 42 26-67 2-45 (325)
359 PF05127 Helicase_RecD: Helica 95.5 0.014 3.1E-07 47.9 3.3 123 47-187 1-129 (177)
360 PRK14088 dnaA chromosomal repl 95.5 0.095 2.1E-06 50.4 9.4 50 27-76 110-168 (440)
361 PRK07133 DNA polymerase III su 95.4 0.17 3.7E-06 51.1 11.3 36 33-68 29-65 (725)
362 COG1444 Predicted P-loop ATPas 95.4 0.34 7.4E-06 48.9 13.1 138 26-185 212-360 (758)
363 PRK12422 chromosomal replicati 95.4 0.049 1.1E-06 52.3 7.2 33 44-76 142-177 (445)
364 PRK06067 flagellar accessory p 95.4 0.2 4.4E-06 43.7 10.6 59 32-91 12-75 (234)
365 COG1484 DnaC DNA replication p 95.4 0.066 1.4E-06 47.2 7.5 48 43-90 105-154 (254)
366 KOG0991 Replication factor C, 95.4 0.031 6.7E-07 47.3 5.0 29 39-67 44-72 (333)
367 TIGR02782 TrbB_P P-type conjug 95.4 0.051 1.1E-06 49.2 6.9 53 26-80 117-174 (299)
368 PRK14086 dnaA chromosomal repl 95.3 0.15 3.3E-06 50.4 10.4 41 45-86 316-361 (617)
369 PF01695 IstB_IS21: IstB-like 95.3 0.04 8.6E-07 45.8 5.6 38 44-82 48-88 (178)
370 COG1419 FlhF Flagellar GTP-bin 95.3 0.28 6E-06 45.6 11.4 112 43-186 203-328 (407)
371 PRK08451 DNA polymerase III su 95.3 0.31 6.6E-06 47.7 12.4 36 32-67 24-60 (535)
372 COG1435 Tdk Thymidine kinase [ 95.3 0.28 6.1E-06 40.6 10.2 34 46-79 7-43 (201)
373 PRK04328 hypothetical protein; 95.2 0.2 4.4E-06 44.1 10.1 58 33-91 11-73 (249)
374 TIGR03346 chaperone_ClpB ATP-d 95.2 0.086 1.9E-06 55.2 8.9 94 44-169 596-691 (852)
375 COG1223 Predicted ATPase (AAA+ 95.2 0.041 8.9E-07 47.4 5.2 40 41-81 149-188 (368)
376 PTZ00293 thymidine kinase; Pro 95.2 0.16 3.4E-06 43.1 8.7 34 46-79 7-43 (211)
377 TIGR02397 dnaX_nterm DNA polym 95.1 0.32 6.9E-06 45.4 11.8 39 30-68 22-61 (355)
378 TIGR03880 KaiC_arch_3 KaiC dom 95.1 0.21 4.5E-06 43.3 9.8 57 34-91 5-66 (224)
379 COG2805 PilT Tfp pilus assembl 95.1 0.044 9.6E-07 48.4 5.3 40 44-83 126-169 (353)
380 PF01745 IPT: Isopentenyl tran 95.1 0.028 6E-07 47.2 3.9 33 45-78 3-35 (233)
381 COG0470 HolB ATPase involved i 95.1 0.18 3.8E-06 46.4 9.9 24 45-68 26-49 (325)
382 TIGR03345 VI_ClpV1 type VI sec 95.1 0.25 5.5E-06 51.6 11.8 38 30-67 192-232 (852)
383 TIGR02655 circ_KaiC circadian 95.1 0.28 6.1E-06 47.9 11.5 115 28-157 246-365 (484)
384 TIGR02012 tigrfam_recA protein 95.1 0.12 2.7E-06 46.9 8.3 53 31-83 40-98 (321)
385 PRK12724 flagellar biosynthesi 95.0 0.32 7E-06 45.8 11.1 31 45-75 225-259 (432)
386 KOG1051 Chaperone HSP104 and r 95.0 0.19 4.1E-06 51.6 10.3 107 28-169 565-684 (898)
387 KOG1807 Helicases [Replication 95.0 0.044 9.4E-07 54.2 5.5 66 22-90 375-449 (1025)
388 cd00983 recA RecA is a bacter 95.0 0.1 2.2E-06 47.5 7.7 56 28-83 37-98 (325)
389 PRK06647 DNA polymerase III su 95.0 0.28 6.1E-06 48.6 11.2 38 31-68 25-63 (563)
390 KOG0740 AAA+-type ATPase [Post 94.9 0.071 1.5E-06 50.0 6.5 45 42-87 185-229 (428)
391 KOG0738 AAA+-type ATPase [Post 94.9 0.038 8.2E-07 50.4 4.5 46 44-90 246-291 (491)
392 PRK07471 DNA polymerase III su 94.9 0.36 7.9E-06 45.1 11.2 38 30-67 24-65 (365)
393 cd01393 recA_like RecA is a b 94.9 0.23 4.9E-06 43.1 9.3 48 33-80 7-65 (226)
394 PF07728 AAA_5: AAA domain (dy 94.8 0.042 9E-07 43.6 4.3 33 45-77 1-33 (139)
395 PRK05703 flhF flagellar biosyn 94.8 0.48 1.1E-05 45.2 12.1 32 44-75 222-258 (424)
396 PRK13894 conjugal transfer ATP 94.8 0.09 1.9E-06 48.0 6.9 54 25-80 132-190 (319)
397 PRK14954 DNA polymerase III su 94.8 0.3 6.6E-06 48.8 10.9 39 30-68 21-63 (620)
398 PHA00547 hypothetical protein 94.8 0.034 7.4E-07 47.8 3.6 27 45-71 77-103 (337)
399 TIGR01650 PD_CobS cobaltochela 94.8 0.1 2.3E-06 47.3 7.0 53 22-76 45-97 (327)
400 TIGR01425 SRP54_euk signal rec 94.7 0.67 1.4E-05 44.0 12.5 33 44-76 101-136 (429)
401 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.12 2.6E-06 45.1 7.2 45 34-78 8-63 (235)
402 TIGR00416 sms DNA repair prote 94.6 0.34 7.3E-06 46.8 10.6 98 32-158 81-183 (454)
403 PRK06305 DNA polymerase III su 94.6 0.28 6.1E-06 47.3 10.1 39 30-68 22-64 (451)
404 PF05707 Zot: Zonular occluden 94.6 0.1 2.2E-06 44.0 6.4 18 46-63 3-20 (193)
405 PRK14971 DNA polymerase III su 94.6 0.53 1.2E-05 47.2 12.2 35 34-68 29-64 (614)
406 PRK09354 recA recombinase A; P 94.6 0.2 4.3E-06 46.1 8.4 52 31-82 45-102 (349)
407 TIGR02237 recomb_radB DNA repa 94.6 0.2 4.4E-06 42.8 8.2 34 44-77 13-49 (209)
408 COG3598 RepA RecA-family ATPas 94.6 0.2 4.3E-06 44.8 7.9 117 27-158 75-207 (402)
409 PRK05728 DNA polymerase III su 94.5 1.1 2.4E-05 35.6 11.6 121 252-411 14-139 (142)
410 PF13481 AAA_25: AAA domain; P 94.5 0.18 4E-06 42.4 7.8 47 45-92 34-93 (193)
411 PRK06835 DNA replication prote 94.5 0.14 3E-06 47.0 7.3 58 25-83 160-225 (329)
412 COG1066 Sms Predicted ATP-depe 94.5 0.48 1E-05 44.0 10.5 102 30-160 78-183 (456)
413 PRK07399 DNA polymerase III su 94.5 0.6 1.3E-05 42.7 11.4 34 34-67 16-50 (314)
414 TIGR00767 rho transcription te 94.5 0.11 2.4E-06 48.5 6.5 24 44-67 169-192 (415)
415 PRK05800 cobU adenosylcobinami 94.4 0.084 1.8E-06 43.5 5.2 48 45-92 3-50 (170)
416 COG3973 Superfamily I DNA and 94.4 0.1 2.2E-06 50.5 6.2 47 44-90 227-282 (747)
417 PRK14970 DNA polymerase III su 94.4 0.6 1.3E-05 43.8 11.6 39 30-68 25-64 (367)
418 PF00931 NB-ARC: NB-ARC domain 94.4 0.4 8.6E-06 43.2 10.1 68 27-94 1-76 (287)
419 TIGR02238 recomb_DMC1 meiotic 94.4 0.33 7.1E-06 44.3 9.4 48 33-80 84-142 (313)
420 PRK00771 signal recognition pa 94.3 0.55 1.2E-05 44.9 11.1 34 43-76 95-131 (437)
421 KOG0726 26S proteasome regulat 94.3 0.066 1.4E-06 47.0 4.4 34 42-75 218-251 (440)
422 KOG0730 AAA+-type ATPase [Post 94.3 0.16 3.5E-06 49.7 7.4 45 41-86 466-510 (693)
423 PHA02244 ATPase-like protein 94.2 0.12 2.6E-06 47.6 6.2 41 33-75 111-151 (383)
424 cd01125 repA Hexameric Replica 94.2 0.55 1.2E-05 41.1 10.3 32 45-76 3-49 (239)
425 TIGR01243 CDC48 AAA family ATP 94.2 0.13 2.8E-06 53.0 7.2 33 43-75 212-244 (733)
426 PF03237 Terminase_6: Terminas 94.2 0.65 1.4E-05 43.5 11.6 109 47-168 1-120 (384)
427 COG2812 DnaX DNA polymerase II 94.2 0.12 2.7E-06 49.9 6.4 38 144-181 118-157 (515)
428 PRK09376 rho transcription ter 94.2 0.16 3.5E-06 47.2 6.9 22 44-65 170-191 (416)
429 KOG1133 Helicase of the DEAD s 94.2 0.087 1.9E-06 51.6 5.4 40 18-59 8-50 (821)
430 PF08423 Rad51: Rad51; InterP 94.1 0.068 1.5E-06 47.3 4.4 58 33-90 26-94 (256)
431 PLN00020 ribulose bisphosphate 94.1 0.045 9.8E-07 50.2 3.2 44 41-85 146-189 (413)
432 PRK10867 signal recognition pa 94.1 0.38 8.2E-06 45.8 9.4 33 43-75 100-136 (433)
433 PRK04301 radA DNA repair and r 94.0 0.49 1.1E-05 43.4 9.8 46 33-78 90-146 (317)
434 cd01128 rho_factor Transcripti 93.9 0.16 3.4E-06 44.6 6.2 25 44-68 17-41 (249)
435 TIGR01420 pilT_fam pilus retra 93.8 0.26 5.6E-06 45.8 7.8 35 44-78 123-161 (343)
436 KOG0651 26S proteasome regulat 93.8 0.095 2.1E-06 46.5 4.5 40 42-82 165-204 (388)
437 KOG0745 Putative ATP-dependent 93.8 0.078 1.7E-06 49.2 4.1 36 44-80 227-262 (564)
438 PLN03187 meiotic recombination 93.8 0.5 1.1E-05 43.6 9.4 46 34-79 115-171 (344)
439 PF13207 AAA_17: AAA domain; P 93.7 0.097 2.1E-06 40.2 4.1 25 46-70 2-26 (121)
440 PRK13851 type IV secretion sys 93.7 0.16 3.4E-06 46.9 6.0 45 34-80 155-201 (344)
441 PRK08058 DNA polymerase III su 93.7 0.8 1.7E-05 42.2 10.7 32 36-67 20-52 (329)
442 cd01122 GP4d_helicase GP4d_hel 93.7 0.23 5E-06 44.4 7.0 45 44-89 31-79 (271)
443 TIGR02858 spore_III_AA stage I 93.6 0.57 1.2E-05 41.7 9.1 34 34-67 102-135 (270)
444 PRK05973 replicative DNA helic 93.5 0.18 4E-06 43.8 5.8 46 45-91 66-114 (237)
445 PRK12608 transcription termina 93.5 0.21 4.6E-06 46.2 6.3 40 28-67 118-157 (380)
446 PF06309 Torsin: Torsin; Inte 93.4 0.31 6.7E-06 37.5 6.1 44 48-91 58-112 (127)
447 PHA03372 DNA packaging termina 93.4 0.5 1.1E-05 46.2 8.9 124 43-181 202-337 (668)
448 cd00561 CobA_CobO_BtuR ATP:cor 93.4 0.22 4.7E-06 40.3 5.6 31 45-75 4-37 (159)
449 COG4962 CpaF Flp pilus assembl 93.3 0.24 5.2E-06 44.9 6.3 54 25-80 157-212 (355)
450 TIGR00959 ffh signal recogniti 93.3 0.58 1.3E-05 44.6 9.3 32 44-75 100-135 (428)
451 PF06733 DEAD_2: DEAD_2; Inte 93.3 0.058 1.3E-06 44.7 2.4 41 112-160 118-160 (174)
452 COG0593 DnaA ATPase involved i 93.3 0.47 1E-05 44.5 8.4 23 43-65 113-135 (408)
453 TIGR02785 addA_Gpos recombinat 93.2 0.22 4.7E-06 54.4 7.0 63 25-92 1-69 (1232)
454 KOG0731 AAA+-type ATPase conta 93.2 0.093 2E-06 52.7 3.8 35 42-76 343-377 (774)
455 cd01130 VirB11-like_ATPase Typ 93.1 0.31 6.7E-06 40.8 6.5 49 24-74 8-58 (186)
456 cd01129 PulE-GspE PulE/GspE Th 93.1 0.26 5.6E-06 43.8 6.3 52 25-77 63-117 (264)
457 KOG0733 Nuclear AAA ATPase (VC 93.1 0.16 3.4E-06 49.3 5.0 45 42-87 544-588 (802)
458 KOG2543 Origin recognition com 93.0 0.25 5.4E-06 45.2 5.9 58 20-77 4-64 (438)
459 TIGR02903 spore_lon_C ATP-depe 92.9 1.2 2.7E-05 44.8 11.5 26 39-64 171-196 (615)
460 PF07724 AAA_2: AAA domain (Cd 92.9 0.15 3.2E-06 42.1 4.1 36 44-79 4-42 (171)
461 PRK12727 flagellar biosynthesi 92.9 1.2 2.7E-05 43.3 10.8 32 44-75 351-387 (559)
462 TIGR02974 phageshock_pspF psp 92.9 0.68 1.5E-05 42.7 8.8 93 44-169 23-117 (329)
463 COG1221 PspF Transcriptional r 92.8 0.43 9.4E-06 44.6 7.5 95 44-171 102-199 (403)
464 TIGR00708 cobA cob(I)alamin ad 92.8 0.83 1.8E-05 37.5 8.2 31 45-75 7-40 (173)
465 KOG0652 26S proteasome regulat 92.8 0.084 1.8E-06 45.5 2.5 34 42-75 204-237 (424)
466 PRK10436 hypothetical protein; 92.7 0.21 4.4E-06 48.1 5.4 43 24-67 200-242 (462)
467 PRK10733 hflB ATP-dependent me 92.6 0.37 7.9E-06 48.8 7.3 34 43-76 185-218 (644)
468 COG1702 PhoH Phosphate starvat 92.6 0.2 4.3E-06 45.2 4.8 38 25-65 128-165 (348)
469 PF12775 AAA_7: P-loop contain 92.6 0.32 6.9E-06 43.4 6.2 33 34-68 26-58 (272)
470 KOG0990 Replication factor C, 92.6 0.25 5.4E-06 44.1 5.2 29 42-70 61-89 (360)
471 PRK13900 type IV secretion sys 92.6 0.29 6.4E-06 45.0 6.0 36 44-79 161-198 (332)
472 TIGR03499 FlhF flagellar biosy 92.5 0.44 9.5E-06 42.9 6.9 32 44-75 195-231 (282)
473 PRK05986 cob(I)alamin adenolsy 92.4 0.67 1.4E-05 38.7 7.4 35 44-78 23-60 (191)
474 COG0324 MiaA tRNA delta(2)-iso 92.4 0.15 3.3E-06 45.8 3.8 25 45-69 5-29 (308)
475 KOG1133 Helicase of the DEAD s 92.4 1.2 2.7E-05 44.0 10.1 101 268-383 629-779 (821)
476 COG0467 RAD55 RecA-superfamily 92.2 0.54 1.2E-05 41.8 7.2 47 44-91 24-73 (260)
477 PRK04841 transcriptional regul 92.2 2 4.3E-05 45.8 12.6 33 44-77 33-65 (903)
478 PLN02165 adenylate isopentenyl 92.1 0.17 3.7E-06 46.1 3.8 31 39-69 39-69 (334)
479 PF00437 T2SE: Type II/IV secr 92.1 0.33 7.1E-06 43.4 5.6 36 44-79 128-166 (270)
480 PRK06731 flhF flagellar biosyn 92.0 4.4 9.6E-05 36.1 12.5 44 44-87 76-125 (270)
481 PF01935 DUF87: Domain of unkn 92.0 0.2 4.2E-06 43.6 4.0 36 44-79 24-63 (229)
482 PRK05564 DNA polymerase III su 92.0 2.5 5.4E-05 38.7 11.4 39 29-67 11-50 (313)
483 COG0210 UvrD Superfamily I DNA 92.0 0.31 6.8E-06 49.7 6.0 64 25-93 2-72 (655)
484 CHL00195 ycf46 Ycf46; Provisio 91.9 0.24 5.2E-06 48.0 4.8 35 42-76 258-292 (489)
485 PLN03186 DNA repair protein RA 91.9 0.7 1.5E-05 42.7 7.6 48 33-80 111-169 (342)
486 COG1224 TIP49 DNA helicase TIP 91.9 0.28 6.1E-06 44.5 4.8 26 44-69 66-91 (450)
487 PRK09302 circadian clock prote 91.8 2.1 4.6E-05 42.2 11.5 108 32-152 18-137 (509)
488 PF12846 AAA_10: AAA-like doma 91.8 0.23 4.9E-06 45.1 4.4 36 44-79 2-40 (304)
489 TIGR00602 rad24 checkpoint pro 91.7 2 4.3E-05 43.2 11.0 23 46-68 113-135 (637)
490 cd01394 radB RadB. The archaea 91.7 0.45 9.7E-06 41.0 5.9 44 33-76 7-55 (218)
491 PTZ00361 26 proteosome regulat 91.5 0.3 6.5E-06 46.7 4.9 34 42-75 216-249 (438)
492 PRK09183 transposase/IS protei 91.5 0.53 1.1E-05 41.7 6.2 39 44-83 103-144 (259)
493 PF06068 TIP49: TIP49 C-termin 91.5 0.24 5.2E-06 45.5 4.0 33 44-76 51-85 (398)
494 COG0714 MoxR-like ATPases [Gen 91.5 0.44 9.5E-06 44.0 6.0 37 44-80 44-80 (329)
495 PHA00350 putative assembly pro 91.5 0.47 1E-05 44.5 6.0 18 45-62 3-20 (399)
496 PF03969 AFG1_ATPase: AFG1-lik 91.5 0.88 1.9E-05 42.4 7.8 27 42-68 61-87 (362)
497 TIGR02538 type_IV_pilB type IV 91.4 0.33 7.2E-06 48.3 5.4 44 24-68 298-341 (564)
498 TIGR00390 hslU ATP-dependent p 91.4 0.28 6E-06 46.1 4.5 30 43-72 47-76 (441)
499 KOG0349 Putative DEAD-box RNA 91.4 0.032 7E-07 51.3 -1.5 37 25-64 24-60 (725)
500 PRK00091 miaA tRNA delta(2)-is 91.4 0.23 5E-06 45.1 3.9 25 45-69 6-30 (307)
No 1
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.6e-70 Score=527.15 Aligned_cols=400 Identities=78% Similarity=1.254 Sum_probs=361.2
Q ss_pred CcccccccccCCCCCCCcccCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
++++|+|+++..++..++.+...+.|||||++++.+++.++..+++++++|||+|||++++.++..+++++||+||+..|
T Consensus 231 ~~~~~~f~~~~~~~~~~i~L~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~L 310 (732)
T TIGR00603 231 LLEEYDFRNDTVNPDLNIDLKPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVS 310 (732)
T ss_pred hhhhhhhcccccCCCCCcccccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHH
Confidence 36899999999999999999999999999999999998765446899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 81 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
++||.++|.+|+.+++..++.+++..+..+.....|+|+||+++.....+........+.+....|++||+||||++.++
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~ 390 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH
Confidence 99999999999888778888888876655445578999999999776555545556677777788999999999999999
Q ss_pred hHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 161 ~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
.|++++..+.+.+++||||||.+.++....+..++||.+|+.+|.+++++|+++++.+..+++++..+++..|+.. ...
T Consensus 391 ~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~-~~~ 469 (732)
T TIGR00603 391 MFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRE-NSR 469 (732)
T ss_pred HHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHh-cch
Confidence 9999998888889999999999999888788899999999999999999999999999999999999999999843 344
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
.+..+...++.|..++..|++.++ ..++++||||++++.++.+++.|++.+++|.++..+|..++++|+.++.+++||+
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 556677789999999999998886 5688999999999999999999999999999999999999999997558899999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCc-ceeEEEEEeecCCchhHHHHHHHHHHH
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKE-EYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~r~~~~ 399 (411)
|+++++|+|+|+++++|+++++++|...++||+||++|+++++. . +.+++||.+++++|.|+.++++|+++|
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~-------~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD-------AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc-------cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999999987777899999999999999997644 3 457999999999999999999999999
Q ss_pred hhcCCceeEe
Q 015196 400 IDQGYSFKVH 409 (411)
Q Consensus 400 ~~~g~~~~~~ 409 (411)
.+|||.|+|+
T Consensus 622 ~~qGY~~~vi 631 (732)
T TIGR00603 622 VDQGYSFKVI 631 (732)
T ss_pred HHCCCeeEEE
Confidence 9999999996
No 2
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.7e-71 Score=491.09 Aligned_cols=401 Identities=78% Similarity=1.259 Sum_probs=388.1
Q ss_pred CcccccccccCCCCCCCcccCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
|||||+|++|+++|+++++++++..+||||.+.++++++++..++++++.|+|+|||++.+.++...++++|++|.+..-
T Consensus 278 lLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VS 357 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVS 357 (776)
T ss_pred hhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 81 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
++||...|+.|..+.+..++.++++.++.+..++.|+|+||.++....+|..+.++..+++....|+++|+||+|-+++.
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 161 ~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
.|++++....++..+|||||+.|.+++..++++++||.+|+.+|.++.+.|+++.++|.+++|++..+++.+|+ ....+
T Consensus 438 MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL-~~~t~ 516 (776)
T KOG1123|consen 438 MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL-RENTR 516 (776)
T ss_pred HHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH-hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 57888
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
.+..++.++|+|.++|+.|+++|+ .+++|+|||..++-.+..++-.++.++|+|.+++.+|-.+++.|+.++.+..|+.
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 889999999999999999999999 6899999999999999999999999999999999999999999999989999999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHh
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~ 400 (411)
+..+.+.+|+|.++++|..++..+|...-.||+||+.|...... ++.+++||.||+.+|+|+.|+.+|+++|.
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d-------e~fnafFYSLVS~DTqEM~YStKRQ~FLi 668 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND-------EEFNAFFYSLVSKDTQEMYYSTKRQQFLI 668 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc-------cccceeeeeeeecchHHHHhhhhhhhhhh
Confidence 99999999999999999998999999999999999999987666 88999999999999999999999999999
Q ss_pred hcCCceeEee
Q 015196 401 DQGYSFKVHH 410 (411)
Q Consensus 401 ~~g~~~~~~~ 410 (411)
.|||.|||++
T Consensus 669 dQGYsfkVit 678 (776)
T KOG1123|consen 669 DQGYSFKVIT 678 (776)
T ss_pred hcCceEEEee
Confidence 9999999985
No 3
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-51 Score=384.04 Aligned_cols=367 Identities=36% Similarity=0.545 Sum_probs=308.8
Q ss_pred cCCCCCCChhHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
....+.|||||+++++++..+.. .+++++++|||+|||++++.++..+..++|||||+..|+.||.+.+.++++.+ ..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~ 109 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLN-DE 109 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCc-cc
Confidence 45668999999999999987421 36999999999999999999999999999999999999999998888876543 45
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcccc-EEEE
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC-KLGL 177 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~-~i~l 177 (411)
++.+++..++... ..|.|+|++++.... .+..+..+.+++||+|||||.+++.++.+...+.+.+ ++||
T Consensus 110 ~g~~~~~~~~~~~--~~i~vat~qtl~~~~--------~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGL 179 (442)
T COG1061 110 IGIYGGGEKELEP--AKVTVATVQTLARRQ--------LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGL 179 (442)
T ss_pred cceecCceeccCC--CcEEEEEhHHHhhhh--------hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeee
Confidence 7888887665321 579999999886531 3345555689999999999999999999999988888 9999
Q ss_pred eeecccCc-hhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhh--------------h
Q 015196 178 TATLVRED-ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK--------------K 242 (411)
Q Consensus 178 SATp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 242 (411)
||||.+.+ .....+..++++.+|+.++.+++..|++.|+.+..+...+..+....|........ .
T Consensus 180 TATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (442)
T COG1061 180 TATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEA 259 (442)
T ss_pred ccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHH
Confidence 99999988 56788889999999999999999999999999999999877766666552221111 1
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCc----eeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP----MIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
..+......+...+..++..+. .+.+++||+.++++++.++..+... .+.|.++..+|..+++.|+++ .+++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g-~~~~l 336 (442)
T COG1061 260 RRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTG-GIKVL 336 (442)
T ss_pred HHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcC-CCCEE
Confidence 3444445556677777776653 4789999999999999999999887 999999999999999999998 79999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHH
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~ 398 (411)
|++.++.||+|+|+++++|+. ++++|...|.|++||+.|..++|. ...+++|.++..++.+..++++|...
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~-~~t~S~~~~~Q~lGR~LR~~~~k~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIIL-RPTGSRRLFIQRLGRGLRPAEGKE--------DTLALDYSLVPDDLGEEDIARRRRLF 407 (442)
T ss_pred EEeeeccceecCCCCcEEEEe-CCCCcHHHHHHHhhhhccCCCCCC--------ceEEEEEEeecCcccccchhhhhhhh
Confidence 999999999999999999998 568899999999999999765443 44699999999999999999999888
Q ss_pred HhhcCCceeEe
Q 015196 399 LIDQGYSFKVH 409 (411)
Q Consensus 399 ~~~~g~~~~~~ 409 (411)
...+|+..++-
T Consensus 408 ~~~~g~~~~~~ 418 (442)
T COG1061 408 LIRKGYTYRLL 418 (442)
T ss_pred HHhccchhhhh
Confidence 88888876543
No 4
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.2e-46 Score=357.94 Aligned_cols=358 Identities=17% Similarity=0.224 Sum_probs=270.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.+.|||||++++..++.+. ++++++|||+|||++++.++. ....++||++|+++|+.||.++|.+|...+...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~---~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNN---RRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcC---ceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 4799999999999998765 789999999999999776543 223499999999999999999999987555444
Q ss_pred E-EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-ccccEEE
Q 015196 99 I-CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLG 176 (411)
Q Consensus 99 v-~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~-~~~~~i~ 176 (411)
+ +...+.... ...+|+|+|++++.... ... ...+++||+||||++.+..+..++..+ .+.++++
T Consensus 189 ~~~i~~g~~~~---~~~~I~VaT~qsl~~~~---------~~~--~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lG 254 (501)
T PHA02558 189 MHKIYSGTAKD---TDAPIVVSTWQSAVKQP---------KEW--FDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFG 254 (501)
T ss_pred eeEEecCcccC---CCCCEEEeeHHHHhhch---------hhh--ccccCEEEEEchhcccchhHHHHHHhhhccceEEE
Confidence 4 334443322 34789999999875421 012 257899999999999999998888877 4568999
Q ss_pred EeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHH
Q 015196 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256 (411)
Q Consensus 177 lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 256 (411)
|||||.+.+.....+..+||+..+..+..++++.|++.++.+..+...........+. .............+..+...+
T Consensus 255 LTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~Rn~~I 333 (501)
T PHA02558 255 LTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK-GEDYQEEIKYITSHTKRNKWI 333 (501)
T ss_pred EeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc-ccchHHHHHHHhccHHHHHHH
Confidence 9999976554444566789999999999999999999888776666554433221110 000000001111222333444
Q ss_pred HHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEee-ccCccccCc
Q 015196 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSIDI 330 (411)
Q Consensus 257 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t-~~~~~Gid~ 330 (411)
..++.... ..+.+.+||+.++++++.+++.| ++.++||+++..+|..+++.|+++ ...+||+| +.++||+|+
T Consensus 334 ~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 334 ANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISI 411 (501)
T ss_pred HHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceecccccc
Confidence 44443333 34678999999999999999998 366899999999999999999997 88899997 899999999
Q ss_pred cCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchh----------------HHHHHH
Q 015196 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE----------------MFYSTK 394 (411)
Q Consensus 331 ~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~----------------~~~~~~ 394 (411)
|++++||+. .|.+|...++|++||++|.+++|. .+.+|.+++.-... ...+.+
T Consensus 412 p~ld~vIl~-~p~~s~~~~~QriGR~~R~~~~K~----------~~~i~D~vD~~~~~~~~~~~~~~~~~~~~~~~h~~~ 480 (501)
T PHA02558 412 KNLHHVIFA-HPSKSKIIVLQSIGRVLRKHGSKS----------IATVWDIIDDLSVKPKSANAKKKYVHLNYALKHALE 480 (501)
T ss_pred ccccEEEEe-cCCcchhhhhhhhhccccCCCCCc----------eEEEEEeecccccccccccccchhhhhhHHHHHHHH
Confidence 999999987 666789999999999999998655 78899988754432 445588
Q ss_pred HHHHHhhcCCceeEeeC
Q 015196 395 RQQFLIDQGYSFKVHHV 411 (411)
Q Consensus 395 r~~~~~~~g~~~~~~~~ 411 (411)
|.+.+.++.+++.++.|
T Consensus 481 r~~~y~~~~~~~~~~~~ 497 (501)
T PHA02558 481 RIKIYNEEKFNYEIKKV 497 (501)
T ss_pred HHHHHhhccCceEEEEE
Confidence 99999999999988765
No 5
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-41 Score=304.13 Aligned_cols=355 Identities=23% Similarity=0.292 Sum_probs=244.8
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c---CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~---~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
.+..+++|.||.....+.+.. +++++.|||.|||++|++.++. + ++++|+++|++-|+.|....+.++++++
T Consensus 10 ~p~~ie~R~YQ~~i~a~al~~----NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 10 KPNTIEPRLYQLNIAAKALFK----NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccccccHHHHHHHHHHHHhhc----CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCC
Confidence 345578999999999998875 7899999999999999998752 2 4579999999999999999999999999
Q ss_pred CCcEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHH----HHH
Q 015196 96 DDQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR----KVI 166 (411)
Q Consensus 96 ~~~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~----~~~ 166 (411)
+..+..++|.... ......+|+|+|||.+.+.... +.++..+++++||||||+..+. .|- ..+
T Consensus 86 ~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 86 EDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred hhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--------CccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 9999999885442 2345689999999988765432 3444567889999999998876 332 233
Q ss_pred HhhccccEEEEeeecccCchhhh-------------------hhhhhhccc----------------------chhhchH
Q 015196 167 SLTKSHCKLGLTATLVREDERIT-------------------DLNFLIGPK----------------------LYEANWL 205 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~-------------------~~~~~~~~~----------------------~~~~~~~ 205 (411)
..-++.++++|||||........ +...|.... +....+.
T Consensus 158 ~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 158 RSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred HhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHH
Confidence 33455589999999986554321 111111111 0111222
Q ss_pred HHHhcCCcccceeEE-------------EEcCCCHH---------------------------HHHHHHhhh----ch--
Q 015196 206 DLVKGGFIANVQCAE-------------VWCPMTKE---------------------------FFSEYLKKE----NS-- 239 (411)
Q Consensus 206 ~~~~~~~~~~~~~~~-------------~~~~~~~~---------------------------~~~~~~~~~----~~-- 239 (411)
.+.+.|++....... .....+.. .+..|+.+- ..
T Consensus 238 ~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~ 317 (542)
T COG1111 238 PLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGG 317 (542)
T ss_pred HHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccc
Confidence 222333321111000 00000000 011111100 00
Q ss_pred h--hh---------h--------hhhhcCCCcHHHHHHHHH-HhhhcCCCeEEEEecChhHHHHHHHHhC-----C--ce
Q 015196 240 K--KK---------Q--------ALYVMNPNKFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR-----K--PM 292 (411)
Q Consensus 240 ~--~~---------~--------~~~~~~~~k~~~~~~l~~-~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~--~~ 292 (411)
. .+ . ........|+..+..+++ ..+...+.++|||++++++++.+.+.|. + .+
T Consensus 318 sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rF 397 (542)
T COG1111 318 SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRF 397 (542)
T ss_pred hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEE
Confidence 0 00 0 001223346677777773 4434567899999999999999999993 2 23
Q ss_pred ee-------CCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccc
Q 015196 293 IY-------GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLED 365 (411)
Q Consensus 293 i~-------g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~ 365 (411)
+. .++++.++.++++.|+.| .++|||||+.++||+|+|.++.||++ .|..|+..++||.||.||..
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLVaTSVgEEGLDIp~vDlVifY-EpvpSeIR~IQR~GRTGR~r----- 470 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLVATSVGEEGLDIPEVDLVIFY-EPVPSEIRSIQRKGRTGRKR----- 470 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcC-CceEEEEcccccccCCCCcccEEEEe-cCCcHHHHHHHhhCccccCC-----
Confidence 32 358999999999999998 99999999999999999999999998 45569999999999999987
Q ss_pred cccCCCcceeEEEEEeecCCchhHHHH---HHHHHHHhhc
Q 015196 366 RMAGGKEEYNAFFYSLVSTDTQEMFYS---TKRQQFLIDQ 402 (411)
Q Consensus 366 ~~~~~~~~~~~~~y~~~~~~~~~~~~~---~~r~~~~~~~ 402 (411)
.+.+|.|++++|-|+.|+ .++.+.+.+.
T Consensus 471 ---------~Grv~vLvt~gtrdeayy~~s~rke~~m~e~ 501 (542)
T COG1111 471 ---------KGRVVVLVTEGTRDEAYYYSSRRKEQKMIES 501 (542)
T ss_pred ---------CCeEEEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 366889999999997766 5555555543
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-36 Score=295.29 Aligned_cols=294 Identities=20% Similarity=0.202 Sum_probs=202.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc----------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~----------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
+|+|+|.+++..++.+. ++++.+|||+|||++++.++. ++ +..+|||+|+++|+.|+.+++.++..
T Consensus 152 ~pt~iQ~~aip~~l~G~---dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~ 228 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGR---DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGA 228 (545)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhc
Confidence 69999999999999875 899999999999999776542 21 23699999999999999999999865
Q ss_pred CCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HH
Q 015196 94 IQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (411)
Q Consensus 94 ~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~ 164 (411)
.....+....++.. ..+....+|+|+|++.|.....+. .....++.+||+||||++.+..+ .+
T Consensus 229 ~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--------~~~l~~v~~lViDEAd~mld~gf~~~i~~ 300 (545)
T PTZ00110 229 SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--------VTNLRRVTYLVLDEADRMLDMGFEPQIRK 300 (545)
T ss_pred ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--------CCChhhCcEEEeehHHhhhhcchHHHHHH
Confidence 44444444444321 123456799999998775432111 01124578999999999987644 34
Q ss_pred HHHhh-ccccEEEEeeecccCchhhhhhhhhhc--ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhh
Q 015196 165 VISLT-KSHCKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (411)
Q Consensus 165 ~~~~~-~~~~~i~lSATp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (411)
++..+ ...+++++|||....... ....++. +........++. .........
T Consensus 301 il~~~~~~~q~l~~SAT~p~~v~~--l~~~l~~~~~v~i~vg~~~l~---~~~~i~q~~--------------------- 354 (545)
T PTZ00110 301 IVSQIRPDRQTLMWSATWPKEVQS--LARDLCKEEPVHVNVGSLDLT---ACHNIKQEV--------------------- 354 (545)
T ss_pred HHHhCCCCCeEEEEEeCCCHHHHH--HHHHHhccCCEEEEECCCccc---cCCCeeEEE---------------------
Confidence 44444 334789999997532211 1111111 110000000000 000000000
Q ss_pred hhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCee
Q 015196 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (411)
Q Consensus 242 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~ 316 (411)
.......|...+..+++... ..+.++||||++++.++.++..|. +..+||+++..+|..+++.|++| ..+
T Consensus 355 ---~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~ 429 (545)
T PTZ00110 355 ---FVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSP 429 (545)
T ss_pred ---EEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCc
Confidence 00111223344445554332 246799999999999999999983 45789999999999999999998 999
Q ss_pred EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 317 vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|.
T Consensus 430 ILVaTdv~~rGIDi~~v~~VI~~d~P-~s~~~yvqRiGRtGR~G~ 473 (545)
T PTZ00110 430 IMIATDVASRGLDVKDVKYVINFDFP-NQIEDYVHRIGRTGRAGA 473 (545)
T ss_pred EEEEcchhhcCCCcccCCEEEEeCCC-CCHHHHHHHhcccccCCC
Confidence 99999999999999999999999665 699999999999999985
No 7
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=5.1e-37 Score=314.37 Aligned_cols=324 Identities=19% Similarity=0.231 Sum_probs=216.3
Q ss_pred CCCCChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
.+.||+||.+|+.++... ...+++++++|||+|||++|+.++.++ .+++|+++|+.+|+.|+.++|..+. ..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-IE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-cc
Confidence 468999999999888532 123589999999999999988876543 2689999999999999999999863 22
Q ss_pred CC-cEE-EEc--CchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc------------
Q 015196 96 DD-QIC-RFT--SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------------ 159 (411)
Q Consensus 96 ~~-~v~-~~~--~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~------------ 159 (411)
.. .+. .++ +...........|+|+|++++......... ....+....+++||+||||+..+
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~---~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDD---PMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhcccc---ccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 21 111 111 101111234579999999988654211100 00112345788999999999752
Q ss_pred -------hhHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCccc----ceeEEEEcC----
Q 015196 160 -------HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN----VQCAEVWCP---- 224 (411)
Q Consensus 160 -------~~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---- 224 (411)
..|++++..+. ...|||||||.+.. ..+|+..++.+++.+++++|++.+ +.+. ....
T Consensus 567 ~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t------~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~-t~~~~~gi 638 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT------TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIE-TRLSQEGI 638 (1123)
T ss_pred chhhhHHHHHHHHHhhcC-ccEEEEecCCccch------hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEE-EEeccccc
Confidence 46777777764 57899999998532 347888899999999999999983 3322 1111
Q ss_pred -CCH-HHHHHHHhh------h--chhhhhhhh-----hcCCCcH-HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh
Q 015196 225 -MTK-EFFSEYLKK------E--NSKKKQALY-----VMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (411)
Q Consensus 225 -~~~-~~~~~~~~~------~--~~~~~~~~~-----~~~~~k~-~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l 288 (411)
... +....+... . ......... ..++... .++..+.+......+.|+||||.++++++.+.+.|
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHH
Confidence 111 111111000 0 000000000 0111111 24455554433223479999999999999887765
Q ss_pred C--------------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhh
Q 015196 289 R--------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354 (411)
Q Consensus 289 ~--------------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~G 354 (411)
+ +..++|..+ ++..++++|+++...+|+|+++++.+|+|+|.+.+++++ .++.|...|+|++|
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~-rpvkS~~lf~QmIG 795 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFL-RRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEe-cCCCCHHHHHHHHh
Confidence 2 123667665 567899999997334799999999999999999999998 55689999999999
Q ss_pred cccccCC
Q 015196 355 RILRAKG 361 (411)
Q Consensus 355 R~~R~~~ 361 (411)
|+.|..+
T Consensus 796 RgtR~~~ 802 (1123)
T PRK11448 796 RATRLCP 802 (1123)
T ss_pred hhccCCc
Confidence 9999987
No 8
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-36 Score=287.41 Aligned_cols=284 Identities=17% Similarity=0.188 Sum_probs=201.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.+||+|+++++.++.+. ++++.+|||+|||++++.++....+.+||++|+++|+.|+...+... ++ .+..+.+
T Consensus 11 ~~r~~Q~~ai~~~l~g~---dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~-gi---~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGR---DCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKAS-GI---PATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 68999999999999875 89999999999999998888777889999999999999999988764 43 3444444
Q ss_pred chhhh---------hcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch------hHHH---H
Q 015196 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH------MFRK---V 165 (411)
Q Consensus 105 ~~~~~---------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~------~~~~---~ 165 (411)
..... ..+..+|+++|++.+.... .+...+ ...++++||+||||.+..- .+.. +
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~-------~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASN-------RLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCch-------hHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 32211 2345789999999876432 122333 4578899999999998742 2222 3
Q ss_pred HHhhccccEEEEeeecccCchhhhhhhhhhc---ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 166 ISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 166 ~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
...++..+++++|||+...... ++...++ +..+. ..+-.+...+.+....
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~--di~~~l~l~~~~~~~--------~s~~r~nl~~~v~~~~----------------- 209 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVRE--DILRQLNLKNPQIFC--------TSFDRPNLYYEVRRKT----------------- 209 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHH--HHHHHcCCCCCcEEe--------CCCCCCCcEEEEEeCC-----------------
Confidence 3344566899999999753221 1111111 11110 0011111111110000
Q ss_pred hhhhhcCCCcHH-HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCee
Q 015196 243 QALYVMNPNKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLN 316 (411)
Q Consensus 243 ~~~~~~~~~k~~-~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~ 316 (411)
..... ....+.+. ..+.++||||+++++++.++..| .+..+||+++..+|..+++.|.+| .++
T Consensus 210 -------~~~~~~l~~~l~~~---~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~ 278 (470)
T TIGR00614 210 -------PKILEDLLRFIRKE---FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQ 278 (470)
T ss_pred -------ccHHHHHHHHHHHh---cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCc
Confidence 00111 12222222 23667799999999999999998 356789999999999999999998 999
Q ss_pred EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 317 vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||||+++++|+|+|++++||.+..| .|...|+|++||+||.|.
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P-~s~~~y~Qr~GRaGR~G~ 322 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLP-KSMESYYQESGRAGRDGL 322 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCC-CCHHHHHhhhcCcCCCCC
Confidence 99999999999999999999998555 699999999999999985
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.1e-36 Score=291.14 Aligned_cols=294 Identities=20% Similarity=0.150 Sum_probs=203.6
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c---------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~---------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
..|+++|++++..++.+. ++++.+|||+|||++++.++.. + ..++||++|+++|+.|+.+.+..+..
T Consensus 22 ~~p~~iQ~~ai~~~~~g~---d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGR---DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 469999999999999775 8999999999999998776532 1 24799999999999999999888766
Q ss_pred CCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHh
Q 015196 94 IQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (411)
Q Consensus 94 ~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~ 168 (411)
.....+..+.++.. +.+.+..+|+|+|++.|...... ..+....+++||+||||++.+..+...+..
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--------~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--------ENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--------CCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 55566777766432 22345678999999877543211 112235678999999999987655443333
Q ss_pred h----c-cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 169 T----K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 169 ~----~-~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
+ . ..+++++|||+...... .....++. +.......... ............
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~-~~~~~~~~~~~~i~~~~~~~----~~~~i~~~~~~~------------------- 226 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQ-DFAERLLNDPVEVEAEPSRR----ERKKIHQWYYRA------------------- 226 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHH-HHHHHHccCCEEEEecCCcc----cccCceEEEEEe-------------------
Confidence 2 2 23689999999632111 00001110 00000000000 000000000000
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
.....|...+..+++. ....++||||+++++++.+++.| .+.++||+++..+|..+++.|++| .++|
T Consensus 227 ----~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~v 298 (434)
T PRK11192 227 ----DDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNV 298 (434)
T ss_pred ----CCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcE
Confidence 0001233444444433 23678999999999999999998 356789999999999999999998 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
||||+++++|+|+|++++||.++.| .|...|+||+||+||.|.
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p-~s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMP-RSADTYLHRIGRTGRAGR 341 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCC-CCHHHHhhcccccccCCC
Confidence 9999999999999999999998655 599999999999999885
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-36 Score=291.24 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=201.5
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-cC-----------CceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----------KSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~~-----------~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. +. .++||++|+++|+.|+.+.+..+
T Consensus 22 ~~pt~iQ~~ai~~il~g~---dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGR---DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 379999999999999865 8999999999999998776532 11 26999999999999999999988
Q ss_pred hCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----
Q 015196 92 STIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~---- 162 (411)
.......+..+.++.. ..+.+..+|+|+|++.|...... ..+....+++||+||||++.+..+
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--------~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--------NAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--------CCcccccceEEEeecHHHHhccccHHHH
Confidence 6554444444444321 12345679999999987543211 111235678999999999987643
Q ss_pred HHHHHhhcc-ccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 163 RKVISLTKS-HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 163 ~~~~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
..++..+.. .+.+++|||+...... ....++. +........ ............. .+
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~~~--l~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~--~~-------------- 228 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDIKA--LAEKLLHNPLEIEVARR----NTASEQVTQHVHF--VD-------------- 228 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHHHH--HHHHHcCCCeEEEEecc----cccccceeEEEEE--cC--------------
Confidence 334444433 3689999998642111 1111111 110000000 0000000000000 00
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCe
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDL 315 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~ 315 (411)
...+...+..++... ...++||||++++.++.+++.| .+..+||+++..+|..+++.|++| ++
T Consensus 229 --------~~~k~~~l~~l~~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~ 296 (456)
T PRK10590 229 --------KKRKRELLSQMIGKG---NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DI 296 (456)
T ss_pred --------HHHHHHHHHHHHHcC---CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CC
Confidence 011223344444333 3568999999999999999998 356789999999999999999998 99
Q ss_pred eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 316 ~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|||||+++++|+|+|++++||.+..| .+...|+|++||+||.+.
T Consensus 297 ~iLVaTdv~~rGiDip~v~~VI~~~~P-~~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 297 RVLVATDIAARGLDIEELPHVVNYELP-NVPEDYVHRIGRTGRAAA 341 (456)
T ss_pred cEEEEccHHhcCCCcccCCEEEEeCCC-CCHHHhhhhccccccCCC
Confidence 999999999999999999999998655 589999999999999985
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.3e-36 Score=289.24 Aligned_cols=293 Identities=16% Similarity=0.157 Sum_probs=200.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-------------cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------------IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-------------~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.+..+
T Consensus 143 ~ptpiQ~~aip~il~g~---dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l 219 (518)
T PLN00206 143 FPTPIQMQAIPAALSGR---SLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL 219 (518)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 79999999999999765 9999999999999998776431 1247999999999999999988877
Q ss_pred hCCCCCcE-EEEcCchh----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH---
Q 015196 92 STIQDDQI-CRFTSDSK----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR--- 163 (411)
Q Consensus 92 ~~~~~~~v-~~~~~~~~----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~--- 163 (411)
....+..+ ..+.+... ..+....+|+|+|++.|.....+. .+...+..+||+||||++.+..+.
T Consensus 220 ~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--------~~~l~~v~~lViDEad~ml~~gf~~~i 291 (518)
T PLN00206 220 GKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--------DIELDNVSVLVLDEVDCMLERGFRDQV 291 (518)
T ss_pred hCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CccchheeEEEeecHHHHhhcchHHHH
Confidence 54333333 33444322 123456799999999775432211 111246679999999999865443
Q ss_pred -HHHHhhccccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhh
Q 015196 164 -KVISLTKSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (411)
Q Consensus 164 -~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (411)
.++..+...+++++|||....-... ...+... ........ ...........+.++
T Consensus 292 ~~i~~~l~~~q~l~~SATl~~~v~~l--~~~~~~~~~~i~~~~~----~~~~~~v~q~~~~~~----------------- 348 (518)
T PLN00206 292 MQIFQALSQPQVLLFSATVSPEVEKF--ASSLAKDIILISIGNP----NRPNKAVKQLAIWVE----------------- 348 (518)
T ss_pred HHHHHhCCCCcEEEEEeeCCHHHHHH--HHHhCCCCEEEEeCCC----CCCCcceeEEEEecc-----------------
Confidence 4455556678999999986432211 1111110 00000000 000000000011111
Q ss_pred hhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC------CceeeCCCCHHHHHHHHHHhcCCCCe
Q 015196 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRDL 315 (411)
Q Consensus 242 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~------~~~i~g~~~~~~r~~~~~~f~~~~~~ 315 (411)
...|...+..++.... ....++||||+++..++.+++.|. +..+||+++..+|..+++.|++| ++
T Consensus 349 -------~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~ 419 (518)
T PLN00206 349 -------TKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EV 419 (518)
T ss_pred -------chhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CC
Confidence 1112233334443322 224579999999999999988873 45689999999999999999998 99
Q ss_pred eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 316 ~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|||||+++++|+|+|++++||.++.| .+...|+||+||+||.|.
T Consensus 420 ~ILVaTdvl~rGiDip~v~~VI~~d~P-~s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQVIIFDMP-NTIKEYIHQIGRASRMGE 464 (518)
T ss_pred CEEEEecHhhccCCcccCCEEEEeCCC-CCHHHHHHhccccccCCC
Confidence 999999999999999999999998655 699999999999999985
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.4e-37 Score=290.54 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=202.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c------------CCceEEEEcChhhHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~------------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
..|+|+|.+++..++.+. ++++.||||+|||++++.++.. + +.++||++|+++|+.|+.+.+..
T Consensus 29 ~~pt~iQ~~aip~il~g~---dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 29 HNCTPIQALALPLTLAGR---DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCHHHHHHHHHHhCCC---cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 378999999999999875 8999999999999998776531 1 24699999999999999998888
Q ss_pred HhCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH-
Q 015196 91 WSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK- 164 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~- 164 (411)
+.......+..+.++.. ..+....+|+|+|++.+...... ..+...++.++|+||||++.+..+..
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--------~~~~l~~v~~lViDEad~l~~~~f~~~ 177 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--------NHINLGAIQVVVLDEADRMFDLGFIKD 177 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcccccccEEEEecHHHHhhcccHHH
Confidence 76544455666655322 12334579999999977543211 11223567899999999998654433
Q ss_pred ---HHHhhc---cccEEEEeeecccCchhhhhhhhhh-cccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhh
Q 015196 165 ---VISLTK---SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (411)
Q Consensus 165 ---~~~~~~---~~~~i~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (411)
++..+. ....+++|||+....... ....+ .+....... .... ......
T Consensus 178 i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~--~~~~~~~p~~i~v~~-----~~~~-~~~i~~----------------- 232 (423)
T PRK04837 178 IRWLFRRMPPANQRLNMLFSATLSYRVREL--AFEHMNNPEYVEVEP-----EQKT-GHRIKE----------------- 232 (423)
T ss_pred HHHHHHhCCCccceeEEEEeccCCHHHHHH--HHHHCCCCEEEEEcC-----CCcC-CCceeE-----------------
Confidence 334333 234689999986322110 11111 111000000 0000 000000
Q ss_pred chhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCC
Q 015196 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS 312 (411)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~ 312 (411)
.........|...+..+++.. ...++||||++.+.++.+.+.| .+..+||+++..+|..+++.|++|
T Consensus 233 -----~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g 304 (423)
T PRK04837 233 -----ELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG 304 (423)
T ss_pred -----EEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC
Confidence 000011112334455555433 3678999999999999999988 356899999999999999999998
Q ss_pred CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 313 ~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++|||||+++++|+|+|++++||.++.| .+...|+||+||+||.|.
T Consensus 305 -~~~vLVaTdv~~rGiDip~v~~VI~~d~P-~s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 305 -DLDILVATDVAARGLHIPAVTHVFNYDLP-DDCEDYVHRIGRTGRAGA 351 (423)
T ss_pred -CCcEEEEechhhcCCCccccCEEEEeCCC-CchhheEeccccccCCCC
Confidence 99999999999999999999999998665 599999999999999995
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.6e-36 Score=287.95 Aligned_cols=290 Identities=16% Similarity=0.168 Sum_probs=202.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-----CCceEEEEcChhhHHHHHHHHHHHhCC-CCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-----~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~ 97 (411)
.|+|+|++++..++.+. +.++.||||+|||++++.++.. + ..++||++|+++|+.|+.+++..+... ...
T Consensus 26 ~~t~iQ~~ai~~~l~g~---dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 102 (460)
T PRK11776 26 EMTPIQAQSLPAILAGK---DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNI 102 (460)
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 69999999999999875 8999999999999987776533 2 236999999999999999999887542 234
Q ss_pred cEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHHHHh
Q 015196 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISL 168 (411)
Q Consensus 98 ~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~~~~ 168 (411)
.+..+.++.. ..+....+|+|+|++.+.....+. .+....+++||+||||++....+ ..++..
T Consensus 103 ~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--------~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 103 KVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--------TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred EEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--------CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 5666655432 223456899999998775432211 11124568999999999886644 333443
Q ss_pred hc-cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 169 TK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 169 ~~-~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
++ ..+++++|||+...-.. ....++. +....... ...........+.
T Consensus 175 ~~~~~q~ll~SAT~~~~~~~--l~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~------------------------ 223 (460)
T PRK11776 175 APARRQTLLFSATYPEGIAA--ISQRFQRDPVEVKVES-----THDLPAIEQRFYE------------------------ 223 (460)
T ss_pred CCcccEEEEEEecCcHHHHH--HHHHhcCCCEEEEECc-----CCCCCCeeEEEEE------------------------
Confidence 33 34789999998632211 1111111 11000000 0000001100110
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
.....|...+..++.... ..++||||++++.++.+++.| .+..+||+++..+|..+++.|++| ..+|||||
T Consensus 224 ~~~~~k~~~l~~ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVaT 299 (460)
T PRK11776 224 VSPDERLPALQRLLLHHQ---PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVAT 299 (460)
T ss_pred eCcHHHHHHHHHHHHhcC---CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEEe
Confidence 111123345555554433 678999999999999999998 456789999999999999999998 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++++|+|+|++++||.++.| .+...|+||+||+||.|.
T Consensus 300 dv~~rGiDi~~v~~VI~~d~p-~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 300 DVAARGLDIKALEAVINYELA-RDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred cccccccchhcCCeEEEecCC-CCHhHhhhhcccccCCCC
Confidence 999999999999999998655 699999999999999985
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-35 Score=286.30 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=200.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c------------CCceEEEEcChhhHHHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~------------~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.|+++|.+++..++.+. ++++.+|||+|||++++..+.. + ..++||++|+++|+.|+.+.+..+
T Consensus 109 ~~~~iQ~~ai~~~~~G~---dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l 185 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGH---DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL 185 (475)
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999999998875 8999999999999998776532 1 247999999999999999999887
Q ss_pred hCCCCCcEEEEcCchh-----hhh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----
Q 015196 92 STIQDDQICRFTSDSK-----ERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM---- 161 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~-----~~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~---- 161 (411)
.......+..+.++.. ..+ ....+|+|+|+++|.....++ .+...+..+||+||+|++.+..
T Consensus 186 ~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--------~~~l~~l~~lViDEah~l~~~~~~~~ 257 (475)
T PRK01297 186 TKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--------EVHLDMVEVMVLDEADRMLDMGFIPQ 257 (475)
T ss_pred hccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CcccccCceEEechHHHHHhcccHHH
Confidence 6544445555555321 111 245799999999885432111 1112466899999999998653
Q ss_pred HHHHHHhhc---cccEEEEeeecccCchhhhhhhhh-hcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhh
Q 015196 162 FRKVISLTK---SHCKLGLTATLVREDERITDLNFL-IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (411)
Q Consensus 162 ~~~~~~~~~---~~~~i~lSATp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (411)
...++..+. ..+++++|||....-.. ....+ ..+........... .....
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~-------------------- 311 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTDDVMN--LAKQWTTDPAIVEIEPENVA----SDTVE-------------------- 311 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCHHHHH--HHHHhccCCEEEEeccCcCC----CCccc--------------------
Confidence 334444442 34789999997532111 11111 11111100000000 00000
Q ss_pred chhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCC
Q 015196 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS 312 (411)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~ 312 (411)
..........+...+..++... ...++||||++++.++.+.+.| .+..+||.++..+|..+++.|++|
T Consensus 312 ----~~~~~~~~~~k~~~l~~ll~~~---~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G 384 (475)
T PRK01297 312 ----QHVYAVAGSDKYKLLYNLVTQN---PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG 384 (475)
T ss_pred ----EEEEEecchhHHHHHHHHHHhc---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC
Confidence 0000111122333444444332 3568999999999999999888 345789999999999999999998
Q ss_pred CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 313 ~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++++||||+++++|+|+|++++||++..| .|...|+|++||+||.|.
T Consensus 385 -~~~vLvaT~~l~~GIDi~~v~~VI~~~~P-~s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 385 -KIRVLVATDVAGRGIHIDGISHVINFTLP-EDPDDYVHRIGRTGRAGA 431 (475)
T ss_pred -CCcEEEEccccccCCcccCCCEEEEeCCC-CCHHHHHHhhCccCCCCC
Confidence 99999999999999999999999998655 699999999999999995
No 15
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.1e-36 Score=285.24 Aligned_cols=292 Identities=17% Similarity=0.159 Sum_probs=197.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+|+|.+++..++.+. +.++.+|||+|||++++.++... +.++|+++|+++|+.|+.+.+..+.......
T Consensus 50 ~~~~~Q~~ai~~i~~~~---d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 126 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGY---DTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVR 126 (401)
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCce
Confidence 69999999999998876 88999999999999987665332 3479999999999999999888876544444
Q ss_pred EEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHHhh
Q 015196 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (411)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~~~ 169 (411)
+....++.. .......+|+|+|++.+.....+ ..+...++++||+||+|++.+..+.. ++..+
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--------~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~ 198 (401)
T PTZ00424 127 CHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--------RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL 198 (401)
T ss_pred EEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--------CCcccccccEEEEecHHHHHhcchHHHHHHHHhhC
Confidence 444433321 12334568999999977543211 11123577899999999988754432 33333
Q ss_pred -ccccEEEEeeecccCchhhhhhhhhh-cccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 170 -KSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 170 -~~~~~i~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
...+++++|||+...... ....+. .+.......... ........... ....
T Consensus 199 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~------------------- 251 (401)
T PTZ00424 199 PPDVQVALFSATMPNEILE--LTTKFMRDPKRILVKKDEL----TLEGIRQFYVA--VEKE------------------- 251 (401)
T ss_pred CCCcEEEEEEecCCHHHHH--HHHHHcCCCEEEEeCCCCc----ccCCceEEEEe--cChH-------------------
Confidence 234799999998642111 111111 110000000000 00000000000 0000
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
..+...+..+.+.. ...++||||+++++++.+++.| ++..+||+++..+|..+++.|++| +++|||||+
T Consensus 252 --~~~~~~l~~~~~~~---~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLvaT~ 325 (401)
T PTZ00424 252 --EWKFDTLCDLYETL---TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLITTD 325 (401)
T ss_pred --HHHHHHHHHHHHhc---CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEEcc
Confidence 00112233333322 3568999999999999999888 366899999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||+++.| .|...|+|++||+||.|.
T Consensus 326 ~l~~GiDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDLP-ASPENYIHRIGRSGRFGR 363 (401)
T ss_pred cccCCcCcccCCEEEEECCC-CCHHHEeecccccccCCC
Confidence 99999999999999998655 599999999999999884
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.9e-36 Score=292.10 Aligned_cols=293 Identities=15% Similarity=0.123 Sum_probs=203.5
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c------------CCceEEEEcChhhHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~------------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
..|+|+|.+++..++.+. ++++.+|||+|||++++.++.+ + ..++||++|+++|+.|+.+.+..
T Consensus 30 ~~ptpiQ~~~ip~~l~G~---Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 30 TRCTPIQALTLPVALPGG---DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 379999999999999876 8999999999999998776532 1 24799999999999999999998
Q ss_pred HhCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH--
Q 015196 91 WSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~-- 163 (411)
+.......+..+.++.. ..+....+|+|+|++.|.....+. ..+....+.+||+||||++.+..+.
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------~~~~l~~v~~lViDEAh~lld~gf~~~ 179 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------KVVSLHACEICVLDEADRMFDLGFIKD 179 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-------cccchhheeeeEecCHHHHhhcchHHH
Confidence 86554455666665432 123345789999999775432111 1122245678999999998865433
Q ss_pred --HHHHhhc---cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhh
Q 015196 164 --KVISLTK---SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (411)
Q Consensus 164 --~~~~~~~---~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (411)
.++..+. ..+++++|||....-.. ....++. +....... ...........+..
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~--l~~~~l~~p~~i~v~~-----~~~~~~~i~q~~~~-------------- 238 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLE--LAYEHMNEPEKLVVET-----ETITAARVRQRIYF-------------- 238 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHH--HHHHHhcCCcEEEecc-----ccccccceeEEEEe--------------
Confidence 3344443 34789999998632111 1111111 10000000 00000000000000
Q ss_pred chhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCC
Q 015196 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS 312 (411)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~ 312 (411)
.....|...+..++... .+.++||||++++.++.+++.| .+..+||+++..+|..+++.|+++
T Consensus 239 ---------~~~~~k~~~L~~ll~~~---~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G 306 (572)
T PRK04537 239 ---------PADEEKQTLLLGLLSRS---EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306 (572)
T ss_pred ---------cCHHHHHHHHHHHHhcc---cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 00111223344444333 3678999999999999999998 367899999999999999999998
Q ss_pred CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 313 ~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++|||||+++++|+|+|++++||+++.| .+...|+|++||++|.|.
T Consensus 307 -~~~VLVaTdv~arGIDip~V~~VInyd~P-~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 307 -QLEILVATDVAARGLHIDGVKYVYNYDLP-FDAEDYVHRIGRTARLGE 353 (572)
T ss_pred -CCeEEEEehhhhcCCCccCCCEEEEcCCC-CCHHHHhhhhcccccCCC
Confidence 99999999999999999999999998665 599999999999999995
No 17
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.4e-34 Score=289.50 Aligned_cols=344 Identities=17% Similarity=0.236 Sum_probs=243.6
Q ss_pred CCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
.+|||||.++++-++... ...+++|...+|.|||+.++.++..+ .+++||||| .+++.+|.++|.+|+. .
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP-~SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAP-KSTLGNWMNEIRRFCP--V 244 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeC-hHHHHHHHHHHHHHCC--C
Confidence 589999999999875421 12478999999999999988876543 258999999 5678999999999963 3
Q ss_pred CcEEEEcCchhh--------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHHHHH
Q 015196 97 DQICRFTSDSKE--------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (411)
Q Consensus 97 ~~v~~~~~~~~~--------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~~~~ 166 (411)
..+..+++.... ......+|+|+||+++... ...+....|++||+||||++.+. ...+.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e----------~~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE----------KTALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH----------HHHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 455666664321 1124578999999987532 24455678999999999999986 344566
Q ss_pred HhhccccEEEEeeecccCchhhh-hhhhhhcccch----------------------------------hhchHHHHhcC
Q 015196 167 SLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLY----------------------------------EANWLDLVKGG 211 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~-~~~~~~~~~~~----------------------------------~~~~~~~~~~~ 211 (411)
..+...+.++|||||..+..... .+..++.|..+ .....++ ..
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV--~~ 392 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EK 392 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHH--hh
Confidence 66777889999999987665421 11112211111 0011111 11
Q ss_pred CcccceeEEEEcCCCHHHHHHHHh---hhc-----hh-hhhh------------------------------hhhcCCCc
Q 015196 212 FIANVQCAEVWCPMTKEFFSEYLK---KEN-----SK-KKQA------------------------------LYVMNPNK 252 (411)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~-~~~~------------------------------~~~~~~~k 252 (411)
.+.+.....+.+.++......|.. ... .. .... .....+.|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 344555566777777644333321 100 00 0000 00112356
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCC--CCeeEEEeeccCc
Q 015196 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS--RDLNTIFLSKVGD 325 (411)
Q Consensus 253 ~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~--~~~~vlv~t~~~~ 325 (411)
+..+..++.... ..+.++|||+++...++.+..+| +...++|.++..+|..+++.|+.. ....+|++|.+++
T Consensus 473 l~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 473 MVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 777788886665 56889999999999999888887 344689999999999999999874 2345788999999
Q ss_pred cccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHH
Q 015196 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
+|+|++.+++||+++++| |+....|++||++|.|+ .+.+.+|.|+..+|+|+.+.++-
T Consensus 552 lGINLt~Ad~VIiyD~dW-NP~~d~QAidRaHRIGQ-----------kk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 552 LGINLATADIVILYDSDW-NPQVDLQAQDRAHRIGQ-----------KKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred cCCchhhCCEEEEeCCCC-ChHHHHHHHHHhhhcCC-----------CceEEEEEEEeCCcHHHHHHHHH
Confidence 999999999999997765 99999999999999995 44699999999999998887543
No 18
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-34 Score=291.65 Aligned_cols=317 Identities=19% Similarity=0.190 Sum_probs=217.1
Q ss_pred CCCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
..++|+|.|++++..+... ..+.+.++++|||+|||.+++.++. ..+.+++|++|+++|+.|+...|.+++...
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 4578999999999999764 2335789999999999999877653 336799999999999999999999877655
Q ss_pred CCcEEEEcCchhh--------hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHH
Q 015196 96 DDQICRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (411)
Q Consensus 96 ~~~v~~~~~~~~~--------~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~ 166 (411)
+..+..+++.... .+ .+..+|+|+|+..+... +.-.+.+++|+||+|++.......+.
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~-------------v~f~~L~llVIDEahrfgv~~~~~L~ 594 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD-------------VKFKDLGLLIIDEEQRFGVKQKEKLK 594 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC-------------CCcccCCEEEeecccccchhHHHHHH
Confidence 5566776653221 11 23579999999644211 11256789999999998766555444
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
......++++|||||....... .+.....+...... ..+ -.++.. ...+...
T Consensus 595 ~~~~~~~vL~~SATpiprtl~~-~l~g~~d~s~I~~~-----p~~-R~~V~t--~v~~~~~------------------- 646 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIPRTLHM-SMSGIRDLSIIATP-----PED-RLPVRT--FVMEYDP------------------- 646 (926)
T ss_pred hcCCCCCEEEEecCCCHHHHHH-HHhcCCCcEEEecC-----CCC-ccceEE--EEEecCH-------------------
Confidence 4334568999999996422111 00000000000000 000 001100 0001110
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
..+...+.... ..+.+++|||++++.++.+++.| ++..+||+++..+|+.++++|.+| +++|||
T Consensus 647 ------~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV 717 (926)
T TIGR00580 647 ------ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV 717 (926)
T ss_pred ------HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE
Confidence 01111222222 23778999999999988888777 255789999999999999999998 999999
Q ss_pred eeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHH
Q 015196 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~ 399 (411)
||+++++|+|+|++++||+...+.-+...+.|++||+||.+. .++.|.++..+..-..-+++|.+.+
T Consensus 718 aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~-------------~g~aill~~~~~~l~~~~~~RL~~~ 784 (926)
T TIGR00580 718 CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK-------------KAYAYLLYPHQKALTEDAQKRLEAI 784 (926)
T ss_pred ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC-------------CeEEEEEECCcccCCHHHHHHHHHH
Confidence 999999999999999999875543367789999999999874 4667777765544445567888777
Q ss_pred hh
Q 015196 400 ID 401 (411)
Q Consensus 400 ~~ 401 (411)
.+
T Consensus 785 ~~ 786 (926)
T TIGR00580 785 QE 786 (926)
T ss_pred HH
Confidence 65
No 19
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-34 Score=284.28 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=201.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.+||+|++++..++.+. ++++.+|||+|||+++..++....+.++|++|+++|+.|+.+.+... ++ .+..+.+
T Consensus 25 ~~r~~Q~~ai~~il~g~---dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~-gi---~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGR---DCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN-GV---AAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHc-CC---cEEEEcC
Confidence 69999999999999875 89999999999999998888777889999999999999999998875 33 3344443
Q ss_pred chhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHH---HH
Q 015196 105 DSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRK---VI 166 (411)
Q Consensus 105 ~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~---~~ 166 (411)
.... ...+..+++++|++.+... .+...+...+++++|+||||.+..- .+.. +.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--------~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--------NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--------HHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 2211 1124568999999987542 2344555568899999999998742 2322 23
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhh---cccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (411)
..++...++++|||+...... ++...+ .+..+. ..+-.+...+.+.
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~--di~~~l~l~~~~~~~--------~~~~r~nl~~~v~--------------------- 218 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQ--DIVRLLGLNDPLIQI--------SSFDRPNIRYTLV--------------------- 218 (607)
T ss_pred HhCCCCcEEEEecCCChhHHH--HHHHHhCCCCeEEEE--------CCCCCCcceeeee---------------------
Confidence 334556789999998754322 111111 111100 0000000000000
Q ss_pred hhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 244 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
.... ....++.......+.++||||+++++++.++..|. +..+||+++..+|..+++.|..+ .++||
T Consensus 219 ----~~~~---~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VL 290 (607)
T PRK11057 219 ----EKFK---PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIV 290 (607)
T ss_pred ----eccc---hHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEE
Confidence 0001 11222322222347789999999999999999983 56899999999999999999998 99999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||+++++|+|+|++++||.++.| .|...|+|++||+||.|.
T Consensus 291 VaT~a~~~GIDip~V~~VI~~d~P-~s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 291 VATVAFGMGINKPNVRFVVHFDIP-RNIESYYQETGRAGRDGL 332 (607)
T ss_pred EEechhhccCCCCCcCEEEEeCCC-CCHHHHHHHhhhccCCCC
Confidence 999999999999999999998655 699999999999999985
No 20
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=7.9e-34 Score=289.85 Aligned_cols=344 Identities=21% Similarity=0.282 Sum_probs=224.3
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
+..+++|+||++++...+.. ++++++|||+|||++++.++.. .++++||++|+++|+.||...+.++++.+.
T Consensus 11 ~~~~~~r~yQ~~~~~~~l~~----n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 11 PNTIEARLYQQLLAATALKK----NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred cCcCCccHHHHHHHHHHhcC----CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 34578999999999887764 7899999999999998777643 357999999999999999999999887765
Q ss_pred CcEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHHHHHh---
Q 015196 97 DQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISL--- 168 (411)
Q Consensus 97 ~~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~~~~~--- 168 (411)
..+..+++.... .....++|+|+|++.+..... ...+....+++||+||||++.+. .+..+...
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~ 158 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLI--------AGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE 158 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHH--------cCCCChhhCcEEEEECCccccccccHHHHHHHHHh
Confidence 567777664332 223467899999997754321 11222356889999999998765 33222222
Q ss_pred -hccccEEEEeeecccCchhhhh-hhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHH---------------
Q 015196 169 -TKSHCKLGLTATLVREDERITD-LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS--------------- 231 (411)
Q Consensus 169 -~~~~~~i~lSATp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 231 (411)
.+..++++|||||......... +..+....+.-.+..+.--.+++.+.....+..++++....
T Consensus 159 ~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 159 DAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2344699999999755432211 11111000000000000000111111111222221111100
Q ss_pred ------------------------------------------------------------------HHHhhhch------
Q 015196 232 ------------------------------------------------------------------EYLKKENS------ 239 (411)
Q Consensus 232 ------------------------------------------------------------------~~~~~~~~------ 239 (411)
.|+.....
T Consensus 239 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~ 318 (773)
T PRK13766 239 LKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSG 318 (773)
T ss_pred HHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccC
Confidence 00000000
Q ss_pred ------------hhhhhh-----hhcCCCcHHHHHHHHHHh-hhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCC
Q 015196 240 ------------KKKQAL-----YVMNPNKFRACEFLIRFH-EQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGA 296 (411)
Q Consensus 240 ------------~~~~~~-----~~~~~~k~~~~~~l~~~~-~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~ 296 (411)
.....+ ......|...+..+++.. ....+.++||||++.++++.+.+.|. ...++|.
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 319 GSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred CcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 000000 011223556666666432 22457899999999999999999982 3345664
Q ss_pred --------CCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 015196 297 --------TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (411)
Q Consensus 297 --------~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~ 368 (411)
++..+|..++++|+++ +.++||+|+++++|+|+|.+++||+++++ .|...++|++||++|.++
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~-~s~~r~iQR~GR~gR~~~------- 469 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPV-PSEIRSIQRKGRTGRQEE------- 469 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEeCCC-CCHHHHHHHhcccCcCCC-------
Confidence 7888999999999998 99999999999999999999999999665 599999999999999883
Q ss_pred CCCcceeEEEEEeecCCchhHHHH
Q 015196 369 GGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 369 ~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
..+|.++..+|.|+.+.
T Consensus 470 -------~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 470 -------GRVVVLIAKGTRDEAYY 486 (773)
T ss_pred -------CEEEEEEeCCChHHHHH
Confidence 44788999999987654
No 21
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-35 Score=269.04 Aligned_cols=297 Identities=20% Similarity=0.226 Sum_probs=211.8
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-----------CCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----------KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----------~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
-.|+|.|.+.+..++.+. +++..|.||||||+.++.++ .++ +..+||++|+++|+.|...++..+
T Consensus 112 ~~PtpIQaq~wp~~l~Gr---D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGR---DLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCchhhhcccceeccCC---ceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 379999999999998875 89999999999999977763 222 236999999999999999999998
Q ss_pred hCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hH
Q 015196 92 STIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~ 162 (411)
.........+++|+.. ..+....+|+|+|+..+...... ..+...++.++|+|||+++.+. ..
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--------g~~~l~~v~ylVLDEADrMldmGFe~qI 260 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--------GSLNLSRVTYLVLDEADRMLDMGFEPQI 260 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--------CCccccceeEEEeccHHhhhccccHHHH
Confidence 7554443444444322 23456689999999866433211 1112246679999999999975 55
Q ss_pred HHHHHhh-ccc-cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 163 RKVISLT-KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 163 ~~~~~~~-~~~-~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
++++..+ +.. ++++.|||-...-.. .+..++..+.-..+- ...+. .....
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~--------------------lA~~fl~~~~~i~ig--~~~~~------~a~~~ 312 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQ--------------------LAEDFLNNPIQINVG--NKKEL------KANHN 312 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHH--------------------HHHHHhcCceEEEec--chhhh------hhhcc
Confidence 5666666 333 589999997532221 111122211111111 00000 00111
Q ss_pred hhhh-hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCC
Q 015196 241 KKQA-LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (411)
Q Consensus 241 ~~~~-~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~ 314 (411)
..++ ..+....|.+.+..+++....+.+.|+||||+++..|+++...+. +..+||+.++.+|+.+++.|++| +
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~ 391 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-K 391 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-C
Confidence 1111 112234455666677754433567899999999999999999984 45899999999999999999998 9
Q ss_pred eeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 315 ~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
..|||||+.+++|+|+|++++||+++.| .+...|+||+||.||.+.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP-~~vEdYVHRiGRTGRa~~ 437 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFP-NNVEDYVHRIGRTGRAGK 437 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCC-CCHHHHHhhcCccccCCC
Confidence 9999999999999999999999999655 799999999999999775
No 22
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.9e-33 Score=280.88 Aligned_cols=345 Identities=15% Similarity=0.145 Sum_probs=227.1
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
.....|.|||..++..++.. ...+++|..++|.|||+.|.+++..+ .+++|||||. +|..||..++.+++++.
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~-~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~ 225 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRR-HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR 225 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhc-cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC
Confidence 34578999999999887654 23588999999999999998887543 2599999995 79999999998877653
Q ss_pred CCcEEEEcCchhh-------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc------hhH
Q 015196 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMF 162 (411)
Q Consensus 96 ~~~v~~~~~~~~~-------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~------~~~ 162 (411)
+.++.+.... ......+++|++++.+.... ...+.+....|++||+||||++.. ..|
T Consensus 226 ---~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-------~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 226 ---FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-------QRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred ---eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-------HHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 3344332111 11224689999999886431 233445567899999999999972 234
Q ss_pred HHHHHhh--ccccEEEEeeecccCchhh-hhhhhhhcccchhh-------------------------------------
Q 015196 163 RKVISLT--KSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA------------------------------------- 202 (411)
Q Consensus 163 ~~~~~~~--~~~~~i~lSATp~~~~~~~-~~~~~~~~~~~~~~------------------------------------- 202 (411)
. .+..+ ...++++|||||..+.... ..+..+++|..+..
T Consensus 296 ~-~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 296 Q-VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred H-HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 4 33333 3457899999998654321 01111111111000
Q ss_pred -----ch------------------HHHHh-----cC--------------CcccceeEEEEcCCCHHHHHHHHhhhc--
Q 015196 203 -----NW------------------LDLVK-----GG--------------FIANVQCAEVWCPMTKEFFSEYLKKEN-- 238 (411)
Q Consensus 203 -----~~------------------~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (411)
.. .+++. .| -+.+..+..+..+++.++...+.....
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~ 454 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEAR 454 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHH
Confidence 00 00000 00 001122233333343332221110000
Q ss_pred ----hhhhhhhh--------hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC------CceeeCCCCHH
Q 015196 239 ----SKKKQALY--------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHV 300 (411)
Q Consensus 239 ----~~~~~~~~--------~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~------~~~i~g~~~~~ 300 (411)
........ .....|+..+..+++.. .+.|+||||++.+.+..+.+.|. +..+||+++..
T Consensus 455 ~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 455 ARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSII 531 (956)
T ss_pred HHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHH
Confidence 00000000 01112444444444433 37899999999999999999982 34689999999
Q ss_pred HHHHHHHHhcCC-CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEE
Q 015196 301 ERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379 (411)
Q Consensus 301 ~r~~~~~~f~~~-~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y 379 (411)
+|+.+++.|+++ +..+|||||.++++|+|++.+++||+++.| +|+..|+||+||++|.|+ ...+.+|
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ-----------~~~V~i~ 599 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQ-----------KHDIQIH 599 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCC-----------CceEEEE
Confidence 999999999985 268999999999999999999999999766 499999999999999995 4468999
Q ss_pred EeecCCchhHHHHH
Q 015196 380 SLVSTDTQEMFYST 393 (411)
Q Consensus 380 ~~~~~~~~~~~~~~ 393 (411)
.++.++|.++.+.+
T Consensus 600 ~~~~~~t~~e~i~~ 613 (956)
T PRK04914 600 VPYLEGTAQERLFR 613 (956)
T ss_pred EccCCCCHHHHHHH
Confidence 99999999877664
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-34 Score=282.13 Aligned_cols=292 Identities=17% Similarity=0.187 Sum_probs=200.5
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc-----CCceEEEEcChhhHHHHHHHHHHHhCCC-C
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ-D 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~-~ 96 (411)
..|+|+|.+++..++.+. ++++.||||+|||++++.++. .+ ..++||++|+++|+.|+.+++..+.+.. .
T Consensus 27 ~~ptpiQ~~ai~~ll~g~---dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGR---DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 379999999999998765 899999999999999766543 22 2479999999999999999998875432 3
Q ss_pred CcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH----HHHH
Q 015196 97 DQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~----~~~~ 167 (411)
..+..++++.. ..+....+|+|+|++.+.....+. .+....+.+||+||||++....+. .++.
T Consensus 104 i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~--------~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG--------TLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred ceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 34444444321 123356799999998775432111 112245678999999998865443 3333
Q ss_pred hhc-cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 168 LTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 168 ~~~-~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
.++ ..+++++|||+....... ...++. +...... ............. +
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i--~~~~l~~~~~i~i~------~~~~~~~~i~q~~----------------------~ 225 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRI--TRRFMKEPQEVRIQ------SSVTTRPDISQSY----------------------W 225 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHH--HHHHcCCCeEEEcc------CccccCCceEEEE----------------------E
Confidence 333 347899999986432211 111111 1100000 0000000000000 0
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
......|...+..++... ...++||||+++..++.++..| .+..+||+++..+|..+++.|+++ +++||||
T Consensus 226 ~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILVA 301 (629)
T PRK11634 226 TVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILIA 301 (629)
T ss_pred EechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEEE
Confidence 001112334444555433 2568999999999999999998 356789999999999999999998 9999999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+++++|+|+|++++||+++.| .+...|+|++||+||.|.
T Consensus 302 Tdv~arGIDip~V~~VI~~d~P-~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIP-MDSESYVHRIGRTGRAGR 341 (629)
T ss_pred cchHhcCCCcccCCEEEEeCCC-CCHHHHHHHhccccCCCC
Confidence 9999999999999999998665 599999999999999985
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.7e-34 Score=283.19 Aligned_cols=333 Identities=16% Similarity=0.159 Sum_probs=215.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.|+++|.+++..++.+. ++++.+|||||||++++.++.. + +.++|+++|+++|+.|....+..+. .....+
T Consensus 36 ~p~~~Q~~ai~~il~G~---nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELAHAGR---HVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHHHCCC---CEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEE
Confidence 69999999999998775 8999999999999998777532 2 3589999999999999999999875 333456
Q ss_pred EEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHHHHhh---
Q 015196 100 CRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--- 169 (411)
Q Consensus 100 ~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~~~~~--- 169 (411)
..+.|+... ......+|+++|+++++...-... .+....+ .+..+||+||+|.+.+. ....++..+
T Consensus 112 ~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~--~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~ri 187 (742)
T TIGR03817 112 ATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSH--ARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLRRL 187 (742)
T ss_pred EEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccch--hHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHHHH
Confidence 667664332 234568999999998864321111 1111222 46789999999998653 222222222
Q ss_pred -----ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 170 -----KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 170 -----~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
...+++++|||..+.... ...+++...... ..++.........+..+...+ .. ..... ..
T Consensus 188 ~~~~g~~~q~i~~SATi~n~~~~---~~~l~g~~~~~i-----~~~~~~~~~~~~~~~~p~~~~----~~-~~~~~--~~ 252 (742)
T TIGR03817 188 CARYGASPVFVLASATTADPAAA---ASRLIGAPVVAV-----TEDGSPRGARTVALWEPPLTE----LT-GENGA--PV 252 (742)
T ss_pred HHhcCCCCEEEEEecCCCCHHHH---HHHHcCCCeEEE-----CCCCCCcCceEEEEecCCccc----cc-ccccc--cc
Confidence 224789999998754322 222333211100 011111111111111111000 00 00000 00
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------------CCceeeCCCCHHHHHHHHHHhcC
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------RKPMIYGATSHVERTKILQAFKC 311 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------------~~~~i~g~~~~~~r~~~~~~f~~ 311 (411)
-......+...+..+++ .+.++||||++++.++.++..+ ++..+||++++.+|..++++|++
T Consensus 253 r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 253 RRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred ccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 00000011223333332 3678999999999999988764 24578999999999999999999
Q ss_pred CCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHH
Q 015196 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (411)
Q Consensus 312 ~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 391 (411)
| ++++||||+++++|+|+++++.||++..| .+...|+||+||+||.|. ....+.+...+..|..+
T Consensus 328 G-~i~vLVaTd~lerGIDI~~vd~VI~~~~P-~s~~~y~qRiGRaGR~G~-------------~g~ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 328 G-ELLGVATTNALELGVDISGLDAVVIAGFP-GTRASLWQQAGRAGRRGQ-------------GALVVLVARDDPLDTYL 392 (742)
T ss_pred C-CceEEEECchHhccCCcccccEEEEeCCC-CCHHHHHHhccccCCCCC-------------CcEEEEEeCCChHHHHH
Confidence 8 99999999999999999999999998665 699999999999999985 23455555555555555
Q ss_pred HHHHHHHHh
Q 015196 392 STKRQQFLI 400 (411)
Q Consensus 392 ~~~r~~~~~ 400 (411)
.+...+.+.
T Consensus 393 ~~~~~~~~~ 401 (742)
T TIGR03817 393 VHHPEALFD 401 (742)
T ss_pred HhCHHHHhc
Confidence 555544544
No 25
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.33 Aligned_cols=291 Identities=17% Similarity=0.190 Sum_probs=200.6
Q ss_pred CCCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
-.|+|+++|++++..+... ..+.+.++.+|||||||++++.++.. .+.++++++|+++|+.|+.+.+.+++...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 4578999999999998764 23457899999999999998877532 35689999999999999999999987544
Q ss_pred CCcEEEEcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHH
Q 015196 96 DDQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (411)
Q Consensus 96 ~~~v~~~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~ 166 (411)
...++.++|+... ...+..+|+|+|+..+... +...+.++||+||+|++....+..+.
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-------------v~~~~l~lvVIDE~Hrfg~~qr~~l~ 404 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-------------VEFHNLGLVIIDEQHRFGVEQRLALR 404 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-------------chhcccceEEEechhhhhHHHHHHHH
Confidence 4567888876541 1134689999999766431 11256789999999999777666555
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
......++++|||||...... +. .++..... ...... .+ -.+... ....
T Consensus 405 ~~~~~~~iL~~SATp~prtl~---~~-~~g~~~~s-~i~~~p-~~-r~~i~~--~~~~---------------------- 453 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTLA---MT-AYGDLDVS-VIDELP-PG-RKPITT--VVIP---------------------- 453 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHHH---HH-HcCCCceE-EEecCC-CC-CCCcEE--EEeC----------------------
Confidence 544456899999999642211 00 11110000 000000 00 001110 0000
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhH------------HHHHHHHh---CCceeeCCCCHHHHHHHHHHhcC
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA------------LTEYAMKL---RKPMIYGATSHVERTKILQAFKC 311 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~------------~~~l~~~l---~~~~i~g~~~~~~r~~~~~~f~~ 311 (411)
...+......+.+.. ..+.+++|||+.+++ ++.+.+.+ ++..+||+++..+|+.++++|++
T Consensus 454 --~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 454 --DSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred --cccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 011112233333333 247799999986543 22333333 47789999999999999999999
Q ss_pred CCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 312 ~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
| +++|||||+++++|+|+|++++||++..+.-+.+.+.|++||+||.+.
T Consensus 530 g-~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 530 G-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred C-CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 8 999999999999999999999999986553367889999999999874
No 26
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=100.00 E-value=2.7e-35 Score=279.75 Aligned_cols=349 Identities=18% Similarity=0.217 Sum_probs=244.6
Q ss_pred ccCCCCCCChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHH
Q 015196 19 ELKPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 19 ~~~~~~~l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
+.-+...+|+||..|++++... ....+++++|+||+|||.+|+.++.++ -+++|+|+.+++|++|....|..|
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 3345678999999999998543 233579999999999999999998765 279999999999999999999998
Q ss_pred hCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc
Q 015196 92 STIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~ 171 (411)
.. ....+..+.+.... ..+.|.++||+.+........ .....+....|||||+||||+.....|+.++.++.+
T Consensus 239 ~P-~~~~~n~i~~~~~~---~s~~i~lsTyqt~~~~~~~~~---~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA 311 (875)
T COG4096 239 LP-FGTKMNKIEDKKGD---TSSEIYLSTYQTMTGRIEQKE---DEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDA 311 (875)
T ss_pred CC-CccceeeeecccCC---cceeEEEeehHHHHhhhhccc---cccccCCCCceeEEEechhhhhHHhhhHHHHHHHHH
Confidence 42 22333344433222 247899999999877653321 122344456789999999999999999999999876
Q ss_pred ccEEEEeeecccCchhhhhhhhhh-cccchhhchHHHHhcCCcccceeEEEEcCCCHHHHH--HHHhhhchhhhh-----
Q 015196 172 HCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS--EYLKKENSKKKQ----- 243 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 243 (411)
.. +++||||....+. .-..+| |...+.+++.+.+++|++.|+..+.+......+.+. ....+.....+.
T Consensus 312 ~~-~gLTATP~~~~d~--~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 312 AT-QGLTATPKETIDR--STYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred HH-HhhccCccccccc--ccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccc
Confidence 64 6669999864443 334466 888999999999999999998877776654332211 000000000000
Q ss_pred ---------hhhhcCCCcHHHHHHHHHHhhh--c--CCCeEEEEecChhHHHHHHHHhCC----------ceeeCCCCHH
Q 015196 244 ---------ALYVMNPNKFRACEFLIRFHEQ--Q--RGDKIIVFADNLFALTEYAMKLRK----------PMIYGATSHV 300 (411)
Q Consensus 244 ---------~~~~~~~~k~~~~~~l~~~~~~--~--~~~~~ivf~~~~~~~~~l~~~l~~----------~~i~g~~~~~ 300 (411)
........+..++..+-++.+. . .-.|+||||.+.+||+.+...|.. ..|.|+..
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 0001111233455555555553 1 135899999999999999999942 34555544
Q ss_pred HHHHHHHHhcCC-CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEE
Q 015196 301 ERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379 (411)
Q Consensus 301 ~r~~~~~~f~~~-~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y 379 (411)
+-...+..|... ...+|.|+++++.+|+|+|.|.+++++ ....|...|+|++||+.|..+. ++.+++..-+|+
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~-r~VrSktkF~QMvGRGTRl~~~-----~~~~~~dK~~F~ 540 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD-RKVRSKTKFKQMVGRGTRLCPD-----LGGPEQDKEFFT 540 (875)
T ss_pred hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh-hhhhhHHHHHHHhcCccccCcc-----ccCccccceeEE
Confidence 333446666653 467899999999999999999999997 7788999999999999999863 222344456666
Q ss_pred EeecCC
Q 015196 380 SLVSTD 385 (411)
Q Consensus 380 ~~~~~~ 385 (411)
.+..-+
T Consensus 541 ifDf~~ 546 (875)
T COG4096 541 IFDFVD 546 (875)
T ss_pred EEEhhh
Confidence 655444
No 27
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4e-34 Score=288.62 Aligned_cols=300 Identities=17% Similarity=0.208 Sum_probs=199.8
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
.+|+|+|.+++...+..+ ++++++||||+|||+++..++.+ .++++++++|+++|+.|+.++|.++... ...++
T Consensus 22 ~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~ 98 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVG 98 (737)
T ss_pred CcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEE
Confidence 479999999999855443 49999999999999998777543 3679999999999999999999986432 34677
Q ss_pred EEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhh----c
Q 015196 101 RFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (411)
Q Consensus 101 ~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~----~ 170 (411)
.++|+... ......+|+|+|++++....+... .+ -..++++|+||+|.+.+. .+..++..+ .
T Consensus 99 ~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~------~~--l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 99 ISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA------PW--LDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEeCCcCccccccCCCCEEEECHHHHHHHHhcCh------hh--hhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 77765332 223468999999998765432210 11 146789999999999864 333333333 3
Q ss_pred cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEE-EEcCCCHHHHHHHHhhhchhhhhhhhhcC
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE-VWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (411)
..++++||||+.+......+ ++...+...+ .|..... +.... .. .+. .. .. ....
T Consensus 171 ~~qii~lSATl~n~~~la~w----l~~~~~~~~~---------rpv~l~~~v~~~~--~~--~~~----~~-~~--~~~~ 226 (737)
T PRK02362 171 DLQVVALSATIGNADELADW----LDAELVDSEW---------RPIDLREGVFYGG--AI--HFD----DS-QR--EVEV 226 (737)
T ss_pred CCcEEEEcccCCCHHHHHHH----hCCCcccCCC---------CCCCCeeeEecCC--ee--ccc----cc-cc--cCCC
Confidence 45899999999754433232 2211111111 1111100 00000 00 000 00 00 0000
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----------------------------------------
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------------------- 288 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l----------------------------------------- 288 (411)
+.+...+..+.+... .+.++||||+++..++.+++.+
T Consensus 227 ~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 111223333333332 4678999999998877655443
Q ss_pred CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE----ecC----CCCCHHHHHHHhhcccccC
Q 015196 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS----HAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 289 ~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----~~~----~~~s~~~~~Q~~GR~~R~~ 360 (411)
++.++||+++..+|..+++.|++| .++|||||+++++|+|+|..++||. +++ .+-+..+|.||+||+||.|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 456789999999999999999998 9999999999999999999988885 221 2247889999999999999
Q ss_pred C
Q 015196 361 G 361 (411)
Q Consensus 361 ~ 361 (411)
.
T Consensus 384 ~ 384 (737)
T PRK02362 384 L 384 (737)
T ss_pred C
Confidence 5
No 28
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-33 Score=279.26 Aligned_cols=290 Identities=17% Similarity=0.194 Sum_probs=199.2
Q ss_pred CCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
.|+|+++|++++..++.. ..+.+.++++|||+|||++++.++. ..+.++++++|+++|+.|+.+.+.++++...
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 478999999999999764 2234679999999999999876653 3356999999999999999999999876444
Q ss_pred CcEEEEcCchhhh---------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHH
Q 015196 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~ 167 (411)
..+..++++.... ..+..+|+|+|+..+... +...++++||+||+|++.......+..
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-------------~~~~~l~lvVIDEaH~fg~~qr~~l~~ 379 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-------------VEFKRLALVIIDEQHRFGVEQRKKLRE 379 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------------ccccccceEEEechhhccHHHHHHHHH
Confidence 5677777754321 124579999999866421 112567899999999998776666655
Q ss_pred hhc---cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 168 LTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 168 ~~~---~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
... ..++++|||||........ .++.. ..+..+....+ -.+... .....
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~l~----~~~~l--~~~~i~~~p~~-r~~i~~--~~~~~------------------- 431 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLALT----VYGDL--DTSIIDELPPG-RKPITT--VLIKH------------------- 431 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHHHH----hcCCc--ceeeeccCCCC-CCceEE--EEeCc-------------------
Confidence 544 5689999999975322110 11100 00000000000 001111 00000
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChh--------HHHHHHHHh-------CCceeeCCCCHHHHHHHHHHh
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL-------RKPMIYGATSHVERTKILQAF 309 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~--------~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f 309 (411)
..+...+..+.+.. ..+.+++|||+.++ .++.+++.| ++.++||+++..+|..++++|
T Consensus 432 -----~~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 504 (630)
T TIGR00643 432 -----DEKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEF 504 (630)
T ss_pred -----chHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 00112233333332 24678999998763 233343333 367899999999999999999
Q ss_pred cCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 310 ~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++| +.+|||||+++++|+|+|++++||++..+.-+...+.|++||+||.+.
T Consensus 505 ~~g-~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 505 REG-EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred HcC-CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 998 999999999999999999999999886553468899999999999884
No 29
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=248.54 Aligned_cols=325 Identities=18% Similarity=0.202 Sum_probs=231.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc-C----CceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-K----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-~----~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
..|.+.|++++...+++. +++..|.||||||.+.+.++. ++ . ..++|++|+++|+.|....|..+......
T Consensus 82 ~~PT~IQ~~aiP~~L~g~---dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGR---DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCCchhhhhhcchhhCCC---cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 478999999999999886 999999999999999888764 22 1 37999999999999999999998554445
Q ss_pred cEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh---
Q 015196 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--- 169 (411)
Q Consensus 98 ~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~--- 169 (411)
.+.++.|+.. ..+.+..+|+|+|+..|....... ..|+-.....+|+|||+++.+..|...+..+
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-------kgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT-------KGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-------cCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 6666666433 234577899999999775432111 1122234468999999999998776655544
Q ss_pred -c-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEE-cCCCHHHHHHHHhhhchhhhhhhh
Q 015196 170 -K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW-CPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 170 -~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
+ .++.+++|||....-.... ...+- .|..+..-. ....+..... -+.
T Consensus 232 ip~erqt~LfsATMt~kv~kL~-rasl~------------------~p~~v~~s~ky~tv~~lkQ~-----------ylf 281 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTKKVRKLQ-RASLD------------------NPVKVAVSSKYQTVDHLKQT-----------YLF 281 (476)
T ss_pred cCccceEEEEEeecchhhHHHH-hhccC------------------CCeEEeccchhcchHHhhhh-----------eEe
Confidence 2 3478999999875433311 00010 111110000 0000011111 122
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
.....|...+-+|++... +..+||||++......++-.|+ +.-+||.++...|...++.|+++ ..+||+||
T Consensus 282 v~~k~K~~yLV~ll~e~~---g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~T 357 (476)
T KOG0330|consen 282 VPGKDKDTYLVYLLNELA---GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCT 357 (476)
T ss_pred ccccccchhHHHHHHhhc---CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEec
Confidence 223344456667776655 7899999999999888887773 34579999999999999999998 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHhh
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~~ 401 (411)
+.+++|+|+|.+++||.++-|. +..+|++|+||++|.|. ......+|+. .|-+...+-...+.+
T Consensus 358 DVaSRGLDip~Vd~VVNyDiP~-~skDYIHRvGRtaRaGr-------------sG~~ItlVtq--yDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVNYDIPT-HSKDYIHRVGRTARAGR-------------SGKAITLVTQ--YDVELVQRIEHALGK 421 (476)
T ss_pred chhcccCCCCCceEEEecCCCC-cHHHHHHHcccccccCC-------------CcceEEEEeh--hhhHHHHHHHHHHhc
Confidence 9999999999999999997774 88899999999999995 2445567765 565555666666777
Q ss_pred cCCceeE
Q 015196 402 QGYSFKV 408 (411)
Q Consensus 402 ~g~~~~~ 408 (411)
.+..|++
T Consensus 422 kl~~~~~ 428 (476)
T KOG0330|consen 422 KLPEYKV 428 (476)
T ss_pred CCCccCc
Confidence 7666654
No 30
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.7e-33 Score=275.69 Aligned_cols=285 Identities=19% Similarity=0.188 Sum_probs=202.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.+||.|.+++..++.+. ++++.+|||+|||+++..++....+.++|++|+++|+.|+.+.+... ++ .+..+++
T Consensus 13 ~fr~~Q~~~i~~il~g~---dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~-gi---~~~~~~s 85 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGR---DVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAA-GV---AAAYLNS 85 (591)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 68999999999999875 89999999999999998887777788999999999999999999885 44 3555554
Q ss_pred chhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc--h----hHHH---HH
Q 015196 105 DSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRK---VI 166 (411)
Q Consensus 105 ~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--~----~~~~---~~ 166 (411)
+... ...+..+|+++|++.+... .+...+...++++||+||||.+.. . .+.. +.
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--------~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQD--------YFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--------HHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 3221 1134678999999988642 233445567889999999999874 2 2332 23
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
..++...++++|||+...... ++...++... . . ....++-.+-..+.+..
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~--~i~~~l~~~~---~-~-~~~~~~~r~nl~~~v~~----------------------- 207 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQ--DIRELLRLAD---A-N-EFITSFDRPNLRFSVVK----------------------- 207 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHH--HHHHHcCCCC---C-C-eEecCCCCCCcEEEEEe-----------------------
Confidence 334455699999998743222 1221111000 0 0 00001111100011100
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
...+...+..++..+ .+.++||||++++.++.+++.|. +..+||+++..+|..+++.|.+| .++|||||
T Consensus 208 --~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlVaT 281 (591)
T TIGR01389 208 --KNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMVAT 281 (591)
T ss_pred --CCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEe
Confidence 011112222333322 36789999999999999999983 46789999999999999999998 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++++|+|+|+++.||.+..| .|...|+|++||+||.|.
T Consensus 282 ~a~~~GID~p~v~~VI~~~~p-~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 282 NAFGMGIDKPNVRFVIHYDMP-GNLESYYQEAGRAGRDGL 320 (591)
T ss_pred chhhccCcCCCCCEEEEcCCC-CCHHHHhhhhccccCCCC
Confidence 999999999999999998554 699999999999999885
No 31
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.4e-33 Score=287.37 Aligned_cols=318 Identities=18% Similarity=0.192 Sum_probs=212.5
Q ss_pred CCCCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
+..+.|++.|++++..++.+ ..+.+.+++++||+|||.+++.++. ..+.+++|++|+++|+.|+...|.++++.
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 45679999999999998764 2346889999999999998765542 34679999999999999999999987654
Q ss_pred CCCcEEEEcCchhh--------hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHH
Q 015196 95 QDDQICRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (411)
Q Consensus 95 ~~~~v~~~~~~~~~--------~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~ 165 (411)
.+..+..+++.... .. .+..+|+|+|++.+... +...+++++|+||+|++.......+
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~-------------v~~~~L~lLVIDEahrfG~~~~e~l 742 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD-------------VKWKDLGLLIVDEEHRFGVRHKERI 742 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC-------------CCHhhCCEEEEechhhcchhHHHHH
Confidence 44556666553211 01 24579999999755321 1124678999999999965444333
Q ss_pred HHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 166 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 166 ~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
.......++++|||||....... .+..+.++.....+. .+- .+.. .......
T Consensus 743 k~l~~~~qvLl~SATpiprtl~l-~~~gl~d~~~I~~~p-----~~r-~~v~--~~~~~~~------------------- 794 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTLNM-AMSGMRDLSIIATPP-----ARR-LAVK--TFVREYD------------------- 794 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHHHH-HHhhCCCcEEEecCC-----CCC-CCce--EEEEecC-------------------
Confidence 22224458999999996422211 011111111000000 000 0000 0000000
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------CCceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
.......++... ..+.+++|||++++.++.+++.| ++..+||+++..+|+.++++|.+| +++||
T Consensus 795 ------~~~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VL 865 (1147)
T PRK10689 795 ------SLVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVL 865 (1147)
T ss_pred ------cHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEE
Confidence 000111222222 13678999999999888887776 356789999999999999999998 99999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHH
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~ 398 (411)
|||+++++|+|+|++++||+.....-+...|.|++||+||.+. .++.|.+...+..-...+++|.+.
T Consensus 866 VaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~-------------~g~a~ll~~~~~~~~~~~~~rl~~ 932 (1147)
T PRK10689 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLEA 932 (1147)
T ss_pred EECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC-------------ceEEEEEeCCCcccCHHHHHHHHH
Confidence 9999999999999999999763321266789999999999885 466676665554445566778777
Q ss_pred Hhh
Q 015196 399 LID 401 (411)
Q Consensus 399 ~~~ 401 (411)
+.+
T Consensus 933 ~~~ 935 (1147)
T PRK10689 933 IAS 935 (1147)
T ss_pred HHH
Confidence 764
No 32
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.1e-33 Score=283.83 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=197.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-----------CCceEEEEcChhhHHHHHHHHHH--
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFKL-- 90 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-----------~~~~lil~P~~~l~~q~~~~~~~-- 90 (411)
.|+|+|.+++..++.+. ++++.||||+|||++++.++.. + +.++||++|+++|+.|+.+.+..
T Consensus 32 ~~tpiQ~~Ai~~il~g~---nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGK---NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 69999999999988765 9999999999999998776531 1 12599999999999998876542
Q ss_pred -----Hh---CC--CCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCC
Q 015196 91 -----WS---TI--QDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH 155 (411)
Q Consensus 91 -----~~---~~--~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H 155 (411)
+. +. +...+.+.+|+... ...+..+|+|+|++++....... .+...+ .+.++||+||+|
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~----~~~~~l--~~l~~VVIDE~H 182 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP----KFREKL--RTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh----hHHHHH--hcCCEEEEechh
Confidence 21 22 23456677765332 22346799999999886544321 111222 467899999999
Q ss_pred CCCchh--------HHHHHHhh-ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCC
Q 015196 156 VVPAHM--------FRKVISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT 226 (411)
Q Consensus 156 ~~~~~~--------~~~~~~~~-~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
.+.+.. ..++.... ...+++++|||+.+......++....... ......++...+..+..... ..+..
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~--~~r~~~iv~~~~~k~~~i~v-~~p~~ 259 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDG--EPRDCEIVDARFVKPFDIKV-ISPVD 259 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccC--CCCceEEEccCCCccceEEE-eccCc
Confidence 998542 22222222 23578999999875333222221110000 00000011111111111111 11100
Q ss_pred HHHHHHHHhhhchhhhhhhhhcCCCc-HHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----------CCceee
Q 015196 227 KEFFSEYLKKENSKKKQALYVMNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------RKPMIY 294 (411)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----------~~~~i~ 294 (411)
+... . ..... ......+.+... .+.++||||+++..++.++..| ++.++|
T Consensus 260 -~l~~----~-----------~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hH 321 (876)
T PRK13767 260 -DLIH----T-----------PAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHH 321 (876)
T ss_pred -cccc----c-----------ccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeee
Confidence 0000 0 00000 011222223222 3568999999999998888776 266789
Q ss_pred CCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 295 g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+++..+|..+++.|++| .+++||||+++++|+|+|++++||++..| .|...|+||+||+||.+.
T Consensus 322 g~ls~~~R~~ve~~fk~G-~i~vLVaTs~Le~GIDip~Vd~VI~~~~P-~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 322 SSLSREVRLEVEEKLKRG-ELKVVVSSTSLELGIDIGYIDLVVLLGSP-KSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CCCCHHHHHHHHHHHHcC-CCeEEEECChHHhcCCCCCCcEEEEeCCC-CCHHHHHHhcccCCCCCC
Confidence 999999999999999998 99999999999999999999999998655 699999999999999754
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.4e-33 Score=277.97 Aligned_cols=291 Identities=17% Similarity=0.165 Sum_probs=198.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 103 (411)
-.+||.|+++|..++.+. ++++.||||+|||+++..++....+.+|||+|+++|+.++...+... ++ ....+.
T Consensus 459 ~sFRp~Q~eaI~aiL~Gr---DVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~-GI---~Aa~L~ 531 (1195)
T PLN03137 459 HSFRPNQREIINATMSGY---DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQA-NI---PAASLS 531 (1195)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhC-CC---eEEEEE
Confidence 369999999999999875 89999999999999999988888889999999999998666666653 33 233443
Q ss_pred Cchh-----h---hh---cCCCcEEEEecceecccCCCChhhHHHHHHHh-cCCccEEEEecCCCCCc------hhHHH-
Q 015196 104 SDSK-----E---RF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPA------HMFRK- 164 (411)
Q Consensus 104 ~~~~-----~---~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~-~~~~~lvIiDE~H~~~~------~~~~~- 164 (411)
++.. . .. .+..+|+++|++.+.... .....+..+. ...+.+|||||||.+.. +.|..
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d----~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSD----SLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcch----HHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH
Confidence 3221 0 01 145799999999885421 0111222221 24578999999999874 23332
Q ss_pred --HHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 165 --VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 165 --~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
+...+....+++||||....... ++...++... ......++..+-..+.+. +..
T Consensus 608 ~~Lr~~fp~vPilALTATAT~~V~e--DI~~~L~l~~-----~~vfr~Sf~RpNL~y~Vv-~k~---------------- 663 (1195)
T PLN03137 608 GILKQKFPNIPVLALTATATASVKE--DVVQALGLVN-----CVVFRQSFNRPNLWYSVV-PKT---------------- 663 (1195)
T ss_pred HHHHHhCCCCCeEEEEecCCHHHHH--HHHHHcCCCC-----cEEeecccCccceEEEEe-ccc----------------
Confidence 23344566789999998643222 1211111100 000011111111111111 000
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhh-cCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCee
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLN 316 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~-~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~ 316 (411)
...+..+.++... ..+.+.||||.+++.++.++..| .+..+||+++..+|..+++.|..| +++
T Consensus 664 ----------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~ 732 (1195)
T PLN03137 664 ----------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EIN 732 (1195)
T ss_pred ----------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCc
Confidence 0011122222110 12567899999999999999988 367899999999999999999998 999
Q ss_pred EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 317 vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||||.++++|||+|++++||.+..| .|...|+|++||+||.|.
T Consensus 733 VLVATdAFGMGIDkPDVR~VIHydlP-kSiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIHHSLP-KSIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEEcCCC-CCHHHHHhhhcccCCCCC
Confidence 99999999999999999999998555 699999999999999996
No 34
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.7e-33 Score=277.91 Aligned_cols=297 Identities=18% Similarity=0.231 Sum_probs=193.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
..|+|+|.+++...+..+ +++++++|||+|||+++..++.+ .+.++++++|+++|+.|+..+|..+.. ....+
T Consensus 22 ~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v 98 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEK-LGLRV 98 (720)
T ss_pred CCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhh-cCCEE
Confidence 379999999999754443 49999999999999998666432 356999999999999999999987643 23456
Q ss_pred EEEcCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhh-ccc
Q 015196 100 CRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT-KSH 172 (411)
Q Consensus 100 ~~~~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~-~~~ 172 (411)
..++|+.. ..+.+..+|+|+|++++....++.. .++ .++++||+||+|.+.+. .+..++..+ ...
T Consensus 99 ~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 99 AMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred EEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 77766532 2234567999999998765432211 112 46789999999999764 333334333 345
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeE-EEEcCCCHHHHHHHHhhhchhhhhhhhhcCCC
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (411)
++++||||+.+..... .+++...+...+ .|.... .+.... .. +. ......+ .+
T Consensus 171 qiI~lSATl~n~~~la----~wl~~~~~~~~~---------rpv~l~~~~~~~~-~~----~~-~~~~~~~------~~- 224 (720)
T PRK00254 171 QILGLSATVGNAEELA----EWLNAELVVSDW---------RPVKLRKGVFYQG-FL----FW-EDGKIER------FP- 224 (720)
T ss_pred cEEEEEccCCCHHHHH----HHhCCccccCCC---------CCCcceeeEecCC-ee----ec-cCcchhc------ch-
Confidence 8999999997543322 233321111110 111100 000000 00 00 0000000 00
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh--------------------------------------CCcee
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--------------------------------------RKPMI 293 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l--------------------------------------~~~~i 293 (411)
......+.+..+ .+.++||||+++..++.++..+ ++.++
T Consensus 225 -~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 225 -NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFH 301 (720)
T ss_pred -HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEe
Confidence 001111112221 3678999999998876544222 46789
Q ss_pred eCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe-------cCCCCCHHHHHHHhhcccccCC
Q 015196 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI-------SSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 294 ~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~-------~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
||+++..+|..+++.|++| .++|||||+++++|+|+|...+||.. ..+.-+...|.||+||+||++.
T Consensus 302 Hagl~~~eR~~ve~~F~~G-~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREG-LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999998 99999999999999999999888852 1111246789999999999984
No 35
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=259.79 Aligned_cols=327 Identities=20% Similarity=0.277 Sum_probs=206.4
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
+...+.||+||.+.+...+ .. ++++++|||+|||++|+.++... +.++++++|++-|+.|....|..++ .
T Consensus 57 ~p~~~~lR~YQ~eivq~AL-gk---Ntii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~-~ 131 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL-GK---NTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL-I 131 (746)
T ss_pred ccCcccccHHHHHHhHHhh-cC---CeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc-C
Confidence 4567899999999999988 44 89999999999999999887532 4699999999999999898888874 4
Q ss_pred CCCcEEEEcCchh----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHHHHHhh
Q 015196 95 QDDQICRFTSDSK----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT 169 (411)
Q Consensus 95 ~~~~v~~~~~~~~----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~~~~~~ 169 (411)
+....+..++... ..+-...+|+|+|++.+...+....... -..+.++||||||+-... .|..++...
T Consensus 132 ~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-------ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 132 PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-------LSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-------cceEEEEEEcccccccccccHHHHHHHH
Confidence 4444444444222 1223457999999999988765432211 156789999999998865 454444222
Q ss_pred -----ccccEEEEeeecccCchhh-hhhhhhhcccc------hhhchHH-------------------------------
Q 015196 170 -----KSHCKLGLTATLVREDERI-TDLNFLIGPKL------YEANWLD------------------------------- 206 (411)
Q Consensus 170 -----~~~~~i~lSATp~~~~~~~-~~~~~~~~~~~------~~~~~~~------------------------------- 206 (411)
...++|||||||.+.-... ..+..++-..- ...++.+
T Consensus 205 l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred HHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 2338999999998433221 11111111100 0000000
Q ss_pred -HHhcCCccc--c-eeEEEEc-----------CCCHH--H--------------------HHHHH--hh---hchhhh--
Q 015196 207 -LVKGGFIAN--V-QCAEVWC-----------PMTKE--F--------------------FSEYL--KK---ENSKKK-- 242 (411)
Q Consensus 207 -~~~~~~~~~--~-~~~~~~~-----------~~~~~--~--------------------~~~~~--~~---~~~~~~-- 242 (411)
+...++..- . ..+..+. +.+.. + +..+. .. +....+
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 000000000 0 0000000 00000 0 00000 00 000000
Q ss_pred --------------------hhhhh--cCCCcHHHHHHHH-HHhhhcCCCeEEEEecChhHHHHHHHHhC------C--c
Q 015196 243 --------------------QALYV--MNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR------K--P 291 (411)
Q Consensus 243 --------------------~~~~~--~~~~k~~~~~~l~-~~~~~~~~~~~ivf~~~~~~~~~l~~~l~------~--~ 291 (411)
..... ....|+..+.+++ +...+.+..++|||+++++.++.+...|. + .
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 00000 0122444444444 44455678899999999999999998884 1 1
Q ss_pred eee--------CCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 292 MIY--------GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 292 ~i~--------g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+.- -+++..++.++++.|++| .+.|||||++++||+|++.|++||.++.. .|+..++||+|| ||..+
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLVATSV~EEGLDI~ec~lVIcYd~~-snpIrmIQrrGR-gRa~n 519 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLVATSVAEEGLDIGECNLVICYDYS-SNPIRMVQRRGR-GRARN 519 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCC-CccEEEEecchhccCCcccccEEEEecCC-ccHHHHHHHhcc-ccccC
Confidence 111 256888999999999998 99999999999999999999999998554 589999999999 99884
No 36
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-32 Score=274.13 Aligned_cols=297 Identities=17% Similarity=0.180 Sum_probs=195.3
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..++|+|+|.++++.+..+. ++++.+|||+|||+++..++.+ .+.++++++|+++|+.|+.+++.++... ...
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~---nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~-g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGE---NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL-GMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCC---cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc-CCe
Confidence 35789999999999986654 8999999999999998777543 2578999999999999999999876432 234
Q ss_pred EEEEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhh---
Q 015196 99 ICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT--- 169 (411)
Q Consensus 99 v~~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~--- 169 (411)
+....++... ......+|+|+|++.+.....++. .. -.++++||+||+|.+.+. .+..++..+
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~------~~--l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP------YI--INDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh------hH--HhhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 5555554322 223567999999997765433221 11 246789999999999754 333333222
Q ss_pred -ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhc
Q 015196 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (411)
Q Consensus 170 -~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (411)
...++++||||+.+... +..+++...+...+ -..|......... .. +... .
T Consensus 167 ~~~~riI~lSATl~n~~~----la~wl~~~~~~~~~-------r~vpl~~~i~~~~--~~----~~~~---~-------- 218 (674)
T PRK01172 167 NPDARILALSATVSNANE----LAQWLNASLIKSNF-------RPVPLKLGILYRK--RL----ILDG---Y-------- 218 (674)
T ss_pred CcCCcEEEEeCccCCHHH----HHHHhCCCccCCCC-------CCCCeEEEEEecC--ee----eecc---c--------
Confidence 23579999999975333 22233322111100 0011111011000 00 0000 0
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh------------------------------CCceeeCCCC
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------RKPMIYGATS 298 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------------------------------~~~~i~g~~~ 298 (411)
...... +..++.... ..+.++||||++++.++.++..| ++.++||+++
T Consensus 219 ~~~~~~-~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 219 ERSQVD-INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred cccccc-HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 000001 112222211 24678999999999988877655 3567899999
Q ss_pred HHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecC-------CCCCHHHHHHHhhcccccCC
Q 015196 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS-------HAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 299 ~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~-------~~~s~~~~~Q~~GR~~R~~~ 361 (411)
..+|..+++.|++| .++|||||+++++|+|+|...+||.-.+ .+-+..++.||+||+||.|.
T Consensus 297 ~~eR~~ve~~f~~g-~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 297 NEQRRFIEEMFRNR-YIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred HHHHHHHHHHHHcC-CCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 99999999999998 9999999999999999997666554211 01267889999999999994
No 37
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=100.00 E-value=2.2e-32 Score=270.77 Aligned_cols=333 Identities=17% Similarity=0.163 Sum_probs=217.7
Q ss_pred CCCCChhHHHHHHHHHhC---C----CCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHH
Q 015196 23 HAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~---~----~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
+.-+|+||..|+++++.. . ..+++++++|||||||++|+.++..+ ..++|+|+|+.+|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 456899999999998532 1 24689999999999999998887553 35899999999999999999999
Q ss_pred HhCCCCCcEEEEcCchhhhh-cCCCcEEEEecceecccCCCChhhHHHHHHHhc-CCccEEEEecCCCCCchhHHHHH-H
Q 015196 91 WSTIQDDQICRFTSDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVI-S 167 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~-~~~~lvIiDE~H~~~~~~~~~~~-~ 167 (411)
+.......+.. .......+ .....|+|+|.++|.... ......+.. ....+||+||||+.....+...+ .
T Consensus 316 ~~~~~~~~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~------~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~ 388 (667)
T TIGR00348 316 LQKDCAERIES-IAELKRLLEKDDGGIIITTIQKFDKKL------KEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKK 388 (667)
T ss_pred hCCCCCcccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhH------hhhhhccCCCCCCEEEEEEcCccccchHHHHHHHh
Confidence 75211111110 01111111 124689999999986421 111111211 12238999999999998887766 4
Q ss_pred hhccccEEEEeeecccCchhh--hhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCC--CHHH----HHHHHhhh-c
Q 015196 168 LTKSHCKLGLTATLVREDERI--TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEF----FSEYLKKE-N 238 (411)
Q Consensus 168 ~~~~~~~i~lSATp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~-~ 238 (411)
.++...++||||||.+..+.. ......++..++.+++.+++++|++.|+.+....... ..+. ...+.... .
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred hCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhc
Confidence 677889999999998754321 1122346688899999999999999998876654432 1221 11111000 0
Q ss_pred ---hhhhhhh---------hhcCCCc-HHHHHHHHHHhhh---cCCCeEEEEecChhHHHHHHHHhCC----------ce
Q 015196 239 ---SKKKQAL---------YVMNPNK-FRACEFLIRFHEQ---QRGDKIIVFADNLFALTEYAMKLRK----------PM 292 (411)
Q Consensus 239 ---~~~~~~~---------~~~~~~k-~~~~~~l~~~~~~---~~~~~~ivf~~~~~~~~~l~~~l~~----------~~ 292 (411)
......+ ...++.. ..++..+++.... ..+.+++|+|.++.+|..+.+.+.. ..
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 0000000 0111111 2344455543311 2347999999999999998888621 12
Q ss_pred eeCCCCHH---------------------HHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHH
Q 015196 293 IYGATSHV---------------------ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (411)
Q Consensus 293 i~g~~~~~---------------------~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q 351 (411)
+++..+.. ....++++|++.+.+++||+++++.+|+|.|.++++++. .|.++ ..++|
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld-Kplk~-h~LlQ 626 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD-KPLKY-HGLLQ 626 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe-ccccc-cHHHH
Confidence 33332211 224688899875588999999999999999999999997 56555 45899
Q ss_pred Hhhccccc-CCCcc
Q 015196 352 RLGRILRA-KGKLE 364 (411)
Q Consensus 352 ~~GR~~R~-~~~k~ 364 (411)
++||+.|. .++|.
T Consensus 627 ai~R~nR~~~~~K~ 640 (667)
T TIGR00348 627 AIARTNRIDGKDKT 640 (667)
T ss_pred HHHHhccccCCCCC
Confidence 99999994 55444
No 38
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-32 Score=262.54 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=208.7
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-HhcC------Cc-eEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK------KS-CLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~~------~~-~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
..|.|.|..++..++.+. +.+..|+||+|||+..+.++ .++. .. +||++|+++|+.|..+++..+....
T Consensus 50 ~~pt~IQ~~~IP~~l~g~---Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 50 EEPTPIQLAAIPLILAGR---DVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 479999999999999885 99999999999999977764 3332 12 8999999999999999999886544
Q ss_pred -CCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----H
Q 015196 96 -DDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (411)
Q Consensus 96 -~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~ 165 (411)
...+..+.|+.. ..+....+|+|+|+..+.....+. .+......++|+|||+++.+..|.. +
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--------KLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--------CcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 345556555432 223345899999999775332221 2233566799999999999874443 4
Q ss_pred HHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 166 ISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 166 ~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
+..++. .+++++|||... ... .....++ .++....+..+... .......+.
T Consensus 199 ~~~~p~~~qtllfSAT~~~-~i~-~l~~~~l------------------~~p~~i~v~~~~~~--------~~~~~i~q~ 250 (513)
T COG0513 199 LKALPPDRQTLLFSATMPD-DIR-ELARRYL------------------NDPVEIEVSVEKLE--------RTLKKIKQF 250 (513)
T ss_pred HHhCCcccEEEEEecCCCH-HHH-HHHHHHc------------------cCCcEEEEcccccc--------ccccCceEE
Confidence 444443 689999999975 211 1111111 11111111100000 000000011
Q ss_pred h-hhcCC-CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 245 L-YVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 245 ~-~~~~~-~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
. ..... .|...+..+++... ..++||||++...++.++..| .+..+||++++.+|...++.|++| ..+|
T Consensus 251 ~~~v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~v 326 (513)
T COG0513 251 YLEVESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRV 326 (513)
T ss_pred EEEeCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCE
Confidence 1 11111 25566777776554 457999999999999999888 367899999999999999999998 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
||||+++++|+|+|++++||.++.| .+...|+||+||+||.|.
T Consensus 327 LVaTDvaaRGiDi~~v~~VinyD~p-~~~e~yvHRiGRTgRaG~ 369 (513)
T COG0513 327 LVATDVAARGLDIPDVSHVINYDLP-LDPEDYVHRIGRTGRAGR 369 (513)
T ss_pred EEEechhhccCCccccceeEEccCC-CCHHHheeccCccccCCC
Confidence 9999999999999999999999666 699999999999999995
No 39
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=267.43 Aligned_cols=301 Identities=17% Similarity=0.109 Sum_probs=202.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
.++|.|++++.+.+..+ .++++++|||+|||++|+.++.+ .+.+++++||.++|+++..++|.+|- ....+++
T Consensus 31 el~~~qq~av~~~~~~~--~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSD--ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCC--CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHH-hcCCEEE
Confidence 89999999999987653 59999999999999999888643 24699999999999999999999332 2234788
Q ss_pred EEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhh----c
Q 015196 101 RFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (411)
Q Consensus 101 ~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~----~ 170 (411)
..+++... .....++|+|+|++++.+..++... + -...++||+||+|.+.+. ....+.... .
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~------~--~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS------W--IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcCcc------h--hhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 88887553 3356799999999999876654322 1 256789999999999976 222222221 2
Q ss_pred cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCC
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (411)
..++++||||..+......++..-.. ........+. .+......+....... + .....
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~~~--~~~~rp~~l~-~~v~~~~~~~~~~~~~----------------k---~~~~~ 237 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAKLV--ESDWRPVPLR-RGVPYVGAFLGADGKK----------------K---TWPLL 237 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCccc--ccCCCCcccc-cCCccceEEEEecCcc----------------c---ccccc
Confidence 24899999999876665554432111 0011111111 1111111111110000 0 00001
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh------------------------------------------
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------------------ 288 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------------------------------------------ 288 (411)
........++...+ .+.+++|||+++..+...++.+
T Consensus 238 ~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 238 IDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred chHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 11123333344443 4778999999887655555443
Q ss_pred CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCC--------CCHHHHHHHhhcccccC
Q 015196 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA--------GSRRQEAQRLGRILRAK 360 (411)
Q Consensus 289 ~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~--------~s~~~~~Q~~GR~~R~~ 360 (411)
+++++|++++...|..+.+.|+.| .++||+||++++.|+|+|.-.+||-....+ -+..++.|+.||+||+|
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g-~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKG-KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcC-CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 256899999999999999999998 999999999999999999655665321111 14678899999999999
Q ss_pred C
Q 015196 361 G 361 (411)
Q Consensus 361 ~ 361 (411)
-
T Consensus 395 ~ 395 (766)
T COG1204 395 Y 395 (766)
T ss_pred c
Confidence 4
No 40
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.1e-31 Score=261.60 Aligned_cols=327 Identities=20% Similarity=0.205 Sum_probs=244.4
Q ss_pred cccCCCCCCChhHHHHHHHHHh---CCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 18 MELKPHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 18 ~~~~~~~~l~~~Q~~ai~~~~~---~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
++-++.|.-+|-|..||+.+.. .+.+.+-++|+..|.|||-+|+-++ ..-++.|.++|||.-|++|.+++|++.
T Consensus 587 F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 587 FEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred HHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHH
Confidence 3445678899999999999854 3456777999999999999988775 345789999999999999999999988
Q ss_pred hCCCCCcEEEEcCchh---------hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH
Q 015196 92 STIQDDQICRFTSDSK---------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~---------~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~ 162 (411)
+...+.+|..++.-.. .--.+..+|+|+|+..|..... -++.+|+||||-|+++-..-
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~-------------FkdLGLlIIDEEqRFGVk~K 733 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK-------------FKDLGLLIIDEEQRFGVKHK 733 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE-------------EecCCeEEEechhhcCccHH
Confidence 8877888888776221 1124678999999987765431 26779999999999998776
Q ss_pred HHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 163 ~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
.++-..-.+-.++-|||||....-.+.. .| +.+. .++...-.....+.....+.++...++-+
T Consensus 734 EkLK~Lr~~VDvLTLSATPIPRTL~Msm----~G--iRdl---SvI~TPP~~R~pV~T~V~~~d~~~ireAI-------- 796 (1139)
T COG1197 734 EKLKELRANVDVLTLSATPIPRTLNMSL----SG--IRDL---SVIATPPEDRLPVKTFVSEYDDLLIREAI-------- 796 (1139)
T ss_pred HHHHHHhccCcEEEeeCCCCcchHHHHH----hc--chhh---hhccCCCCCCcceEEEEecCChHHHHHHH--------
Confidence 6665655666899999999865443211 11 0000 11110000111122222233333322222
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------CCceeeCCCCHHHHHHHHHHhcCCCCe
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDL 315 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~~~~~~ 315 (411)
+... .+|+++....|.++.++.+++.| ++.+.||.|++.+-+.++.+|.++ +.
T Consensus 797 -----------------~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~ 856 (1139)
T COG1197 797 -----------------LREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EY 856 (1139)
T ss_pred -----------------HHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CC
Confidence 2222 35889999999999988888887 478899999999999999999998 99
Q ss_pred eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHH
Q 015196 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 316 ~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
+|||||.+.++|+|+|++|.+|+.....=..+.+.|..||+||... .+|.|-++.++..-...+++|
T Consensus 857 dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~-------------~AYAYfl~p~~k~lT~~A~kR 923 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK-------------QAYAYFLYPPQKALTEDAEKR 923 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc-------------eEEEEEeecCccccCHHHHHH
Confidence 9999999999999999999999874333368899999999999875 699999999888888889999
Q ss_pred HHHHhh---cCCcee
Q 015196 396 QQFLID---QGYSFK 407 (411)
Q Consensus 396 ~~~~~~---~g~~~~ 407 (411)
.+.++. +|-.|+
T Consensus 924 L~aI~~~~~LGaGf~ 938 (1139)
T COG1197 924 LEAIASFTELGAGFK 938 (1139)
T ss_pred HHHHHhhhhcCchHH
Confidence 998884 665554
No 41
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-32 Score=227.75 Aligned_cols=305 Identities=18% Similarity=0.191 Sum_probs=223.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHH-HHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG-VSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a-~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
+|-..|+.|+..++.+. +++..+..|+|||.+. +..+..+ ...+|+++|+++|+.|...-+....+..+.+
T Consensus 49 kPS~IQqrAi~~IlkGr---dViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGR---DVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred CchHHHhhhhhhhhccc---ceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 57888999999999886 8999999999999873 3332222 2479999999999999999998876555555
Q ss_pred EEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHHhh
Q 015196 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (411)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~~~ 169 (411)
+...-|+.. .......+++.+||..+....++ ..+......++|+||++.+.+..+.. +...+
T Consensus 126 ~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 544433222 33456678999999876543322 23334567899999999999874433 44555
Q ss_pred c-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCc-ccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 170 ~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
+ ..+++.+|||....-. ++.+. +. -|++...-..++..+..+.|.-. ..
T Consensus 198 p~~~Qvv~~SATlp~eil-------------------emt~k-fmtdpvrilvkrdeltlEgIKqf~v~---------ve 248 (400)
T KOG0328|consen 198 PPGAQVVLVSATLPHEIL-------------------EMTEK-FMTDPVRILVKRDELTLEGIKQFFVA---------VE 248 (400)
T ss_pred CCCceEEEEeccCcHHHH-------------------HHHHH-hcCCceeEEEecCCCchhhhhhheee---------ec
Confidence 5 5689999999863111 11211 22 23344444445555555544311 11
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
-+..|...+..|.+... -.+++|||++...++++.+.+. +...||+++..+|+++.++|+++ +-+||++|+
T Consensus 249 ~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLitTD 324 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLITTD 324 (400)
T ss_pred hhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEEEec
Confidence 12235667777777665 5689999999999999999983 67899999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCch
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~ 387 (411)
.-++|+|+|.++.||.++-| .+...|++|+||.||.|. .....+++..+..
T Consensus 325 VwaRGiDv~qVslviNYDLP-~nre~YIHRIGRSGRFGR-------------kGvainFVk~~d~ 375 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGR-------------KGVAINFVKSDDL 375 (400)
T ss_pred hhhccCCcceeEEEEecCCC-ccHHHHhhhhccccccCC-------------cceEEEEecHHHH
Confidence 99999999999999998554 689999999999999995 4666777765443
No 42
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.98 E-value=4.3e-30 Score=240.79 Aligned_cols=345 Identities=21% Similarity=0.321 Sum_probs=251.6
Q ss_pred CCCCChhHHHHHHHHHh---CCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 23 HAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~---~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
...|||||.+.++=++. ++ -++++...+|.|||+.+++.+..+ .++.||+||..+ ...|+.+|.+|.
T Consensus 165 ~g~lr~YQveGlnWLi~l~eng--ingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf~- 240 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENG--INGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRFT- 240 (971)
T ss_pred CCccchhhhccHHHHHHHHhcC--cccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHhC-
Confidence 36899999999987653 33 478999999999999887776443 469999999654 788999999994
Q ss_pred CCCCcEEEEcCchhhh--------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHH
Q 015196 94 IQDDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (411)
Q Consensus 94 ~~~~~v~~~~~~~~~~--------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~ 163 (411)
|...+.++.|+.... ..+..+|+++||++.... ...+....|.++||||+|++.++ ...
T Consensus 241 -P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----------k~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 241 -PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----------KSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred -CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----------HHHHhcCCceEEEechhhhhcchhhHHH
Confidence 455677777765431 124689999999977542 25566678999999999999987 455
Q ss_pred HHHHhhccccEEEEeeecccCchhhhhh-hhhhcccchhh---------------------------------chHHHHh
Q 015196 164 KVISLTKSHCKLGLTATLVREDERITDL-NFLIGPKLYEA---------------------------------NWLDLVK 209 (411)
Q Consensus 164 ~~~~~~~~~~~i~lSATp~~~~~~~~~~-~~~~~~~~~~~---------------------------------~~~~~~~ 209 (411)
+.+..+.....+++||||..+.-.+.|. .+++-|.++.. ..+..++
T Consensus 310 ~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 310 KILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 6778888889999999999776543221 11111111100 0000011
Q ss_pred cCCcccceeEEEEcCCCH---HHHHHHHhhhch-----h--hhhhh-------------------------------hhc
Q 015196 210 GGFIANVQCAEVWCPMTK---EFFSEYLKKENS-----K--KKQAL-------------------------------YVM 248 (411)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~--~~~~~-------------------------------~~~ 248 (411)
..+.|..-..+++.++. +.|...+.+... . .+..+ ...
T Consensus 390 -~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 390 -KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred -hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 22455555566666554 444444432211 0 00000 122
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCC--CeeEEEee
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR--DLNTIFLS 321 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~--~~~vlv~t 321 (411)
++.|+.+++.|+...+ ..|.++|||.+....++.+..++. ..-+.|.++.++|...++.|+..+ ..-.|++|
T Consensus 469 nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred cCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 3557889999997776 789999999999888888888773 334789999999999999999973 45688889
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHH
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 396 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~ 396 (411)
.+++-|+|+-.+++||++++.| |++.-.|.+.|++|.|+.| .+.+|.++.++|+|+.+-+|=.
T Consensus 548 RAGGLGINL~aADtVIlyDSDW-NPQ~DLQAmDRaHRIGQ~K-----------~V~V~RLitentVEe~IveRA~ 610 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDW-NPQVDLQAMDRAHRIGQKK-----------PVVVYRLITENTVEEKIVERAA 610 (971)
T ss_pred cccccccccccccEEEEecCCC-CchhhhHHHHHHHhhCCcC-----------ceEEEEEeccchHHHHHHHHHH
Confidence 9999999999999999997775 9999999999999999655 5999999999999988875543
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.98 E-value=1.3e-30 Score=254.44 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=211.7
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH----hcC-------CceEEEEcChhhHHHHHHHHHHHh
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIK-------KSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~-------~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
.+|+|.|..|+..+..+. ++|+.||||||||.+|+.++. ..+ -.+|+++|.++|.......+..++
T Consensus 21 ~~~t~~Q~~a~~~i~~G~---nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~ 97 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGE---NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPL 97 (814)
T ss_pred CCCCHHHHHHHHHHhCCC---ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHH
Confidence 479999999999999775 999999999999999988752 221 269999999999999999998876
Q ss_pred CCCCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-------
Q 015196 93 TIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (411)
Q Consensus 93 ~~~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------- 160 (411)
......+.+-+|+..+ ......+|+++|+++|....... ++.+.| .+...||+||.|.+...
T Consensus 98 ~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~----~~r~~l--~~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 98 RELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP----KFRELL--RDVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH----HHHHHh--cCCcEEEeehhhhhhccccchhhh
Confidence 5555566777775443 22356899999999997765332 344444 46679999999999865
Q ss_pred -hHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhch
Q 015196 161 -MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (411)
Q Consensus 161 -~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (411)
...++.......+.||||||-........++...-+ ..+++.-...++.++..+......+..
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~-------~~~Iv~~~~~k~~~i~v~~p~~~~~~~--------- 235 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGD-------PCEIVDVSAAKKLEIKVISPVEDLIYD--------- 235 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCC-------ceEEEEcccCCcceEEEEecCCccccc---------
Confidence 333344443445889999999754433222221110 001111112223332222211110000
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh------CCceeeCCCCHHHHHHHHHHhcCCC
Q 015196 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSR 313 (411)
Q Consensus 240 ~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------~~~~i~g~~~~~~r~~~~~~f~~~~ 313 (411)
.+........+.+..+ +...+|||+|++..++.++..| .+..+||..+.+.|..+.++|++|
T Consensus 236 ---------~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G- 303 (814)
T COG1201 236 ---------EELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG- 303 (814)
T ss_pred ---------cchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-
Confidence 0111122333333333 2347999999999999999888 356789999999999999999998
Q ss_pred CeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 314 ~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+.+++|||++++-|+|+.+++.||++.+| .+...+.||+||+|+...
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP-~sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSP-KSVNRFLQRIGRAGHRLG 350 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCc-HHHHHHhHhccccccccC
Confidence 89999999999999999999999999666 699999999999987664
No 44
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.5e-30 Score=243.07 Aligned_cols=315 Identities=16% Similarity=0.170 Sum_probs=224.9
Q ss_pred CCCCChhHHHHHHHHHh---CCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 23 HAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~---~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
.|+|+..|+++++.+.. ...+.+-++.+..|||||++|+.++. ..+..+..++||--|++|.++.+.+|+....
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 38999999999999964 34456679999999999999877753 4578999999999999999999999987655
Q ss_pred CcEEEEcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHH
Q 015196 97 DQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~ 167 (411)
..+..+.|..+. -.++..+|+|+|+..+... ....+.++||+||-|++.-.+...+.+
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~-------------V~F~~LgLVIiDEQHRFGV~QR~~L~~ 406 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK-------------VEFHNLGLVIIDEQHRFGVHQRLALRE 406 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc-------------eeecceeEEEEeccccccHHHHHHHHH
Confidence 678888775542 1246689999999866432 223677899999999999998888888
Q ss_pred hhc-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCc-ccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 168 ~~~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
.-. .++++.|||||....-.... ++. .+..-+.+-..- .|+.=+.+.
T Consensus 407 KG~~~Ph~LvMTATPIPRTLAlt~----fgD----ldvS~IdElP~GRkpI~T~~i~----------------------- 455 (677)
T COG1200 407 KGEQNPHVLVMTATPIPRTLALTA----FGD----LDVSIIDELPPGRKPITTVVIP----------------------- 455 (677)
T ss_pred hCCCCCcEEEEeCCCchHHHHHHH----hcc----ccchhhccCCCCCCceEEEEec-----------------------
Confidence 766 57999999999864443221 111 111111100000 111111111
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHH--------HHHHHHh-------CCceeeCCCCHHHHHHHHHHhc
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFAL--------TEYAMKL-------RKPMIYGATSHVERTKILQAFK 310 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~--------~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~ 310 (411)
+..+-.+.+.+.+... .|.++-|.|+-+++- +.+++.| ++.++||.+++.++++++++|+
T Consensus 456 ---~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 456 ---HERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred ---cccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH
Confidence 1112233444444443 488899999877653 3333333 4789999999999999999999
Q ss_pred CCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHH
Q 015196 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (411)
Q Consensus 311 ~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~ 390 (411)
++ +++|||||..++.|+|+|+++++|+....-=..+.+-|..||+||-.. .++++-+..+... .
T Consensus 531 ~~-e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~-------------qSyC~Ll~~~~~~--~ 594 (677)
T COG1200 531 EG-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL-------------QSYCVLLYKPPLS--E 594 (677)
T ss_pred cC-CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc-------------ceEEEEEeCCCCC--h
Confidence 98 999999999999999999999988874332268899999999999663 3444445444433 4
Q ss_pred HHHHHHHHHhhc
Q 015196 391 YSTKRQQFLIDQ 402 (411)
Q Consensus 391 ~~~~r~~~~~~~ 402 (411)
.+++|.+.+.+-
T Consensus 595 ~a~~RL~im~~t 606 (677)
T COG1200 595 VAKQRLKIMRET 606 (677)
T ss_pred hHHHHHHHHHhc
Confidence 557888887743
No 45
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=232.42 Aligned_cols=292 Identities=18% Similarity=0.188 Sum_probs=200.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH----HHhc-----------CCceEEEEcChhhHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA----ACRI-----------KKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~----~~~~-----------~~~~lil~P~~~l~~q~~~~~ 88 (411)
..+.|.|+.++.-.+++. +.+..|.||||||...+.. |..+ +...++++|+++|++|...+-
T Consensus 266 ~eptpIqR~aipl~lQ~r---D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNR---DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCCchHHHhhccchhccC---CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 468999999999887765 8999999999999764433 2222 458999999999999999998
Q ss_pred HHHhCCCCCc-EEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---
Q 015196 89 KLWSTIQDDQ-ICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (411)
Q Consensus 89 ~~~~~~~~~~-v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--- 160 (411)
.+|+...... +.++.+...+ .+...+.|+|+|+..|...+ ... .+-...+..||+||++++.+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L------enr--~lvl~qctyvvldeadrmiDmgfE 414 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL------ENR--YLVLNQCTYVVLDEADRMIDMGFE 414 (673)
T ss_pred HHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH------HHH--HHHhccCceEeccchhhhhccccc
Confidence 8876433333 3444443332 23467899999999775433 112 222467889999999998753
Q ss_pred -hHHHHHHhhcc--------------------------ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCc
Q 015196 161 -MFRKVISLTKS--------------------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI 213 (411)
Q Consensus 161 -~~~~~~~~~~~--------------------------~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (411)
.+..++..++. .+.+.||||....-... ..+|+
T Consensus 415 ~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verl--------------------ar~yl 474 (673)
T KOG0333|consen 415 PDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERL--------------------ARSYL 474 (673)
T ss_pred HHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHH--------------------HHHHh
Confidence 33333333311 24567777765332221 12222
Q ss_pred ccceeEEEEcCCCHHHHHHHHhhhchhhhhhh-hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---
Q 015196 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL-YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--- 289 (411)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--- 289 (411)
..+.+..+...- +...+..+.+ ......|...+..+++.. ...++|||+|.++.++.+++.|.
T Consensus 475 r~pv~vtig~~g----------k~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 475 RRPVVVTIGSAG----------KPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAG 541 (673)
T ss_pred hCCeEEEeccCC----------CCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhcc
Confidence 222222221110 0000111111 111223344455555433 36789999999999999999993
Q ss_pred --CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 290 --KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 290 --~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+..+||+-+.++|+..+..|+++ ..+|||||+++++|+|+|++++||.++.+ +|...|.+||||.||.|+
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIpnVSlVinydma-ksieDYtHRIGRTgRAGk 613 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIPNVSLVINYDMA-KSIEDYTHRIGRTGRAGK 613 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCccceeeecchh-hhHHHHHHHhcccccccc
Confidence 55789999999999999999998 99999999999999999999999998655 799999999999999997
No 46
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.4e-30 Score=227.20 Aligned_cols=293 Identities=19% Similarity=0.214 Sum_probs=205.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---------CC--ceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KK--SCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~--~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.++|.|..++..++.+. ++++.++||||||++.+.++.+. .. ..||++|+++|+.|...-...|..
T Consensus 28 ~mTpVQa~tIPlll~~K---DVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNK---DVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred ccCHHHHhhhHHHhcCC---ceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 78999999999999887 99999999999999988875432 11 589999999999998877666643
Q ss_pred -CCCCcEEEEcCchh------hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH--
Q 015196 94 -IQDDQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-- 164 (411)
Q Consensus 94 -~~~~~v~~~~~~~~------~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~-- 164 (411)
+++..+..+.|+.. .......+|+|+||..|.....+. ...++.....++|+|||+++.+-.|..
T Consensus 105 ~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~------~~~l~~rsLe~LVLDEADrLldmgFe~~~ 178 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQRE------AEKLSFRSLEILVLDEADRLLDMGFEASV 178 (567)
T ss_pred hhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhch------hhhccccccceEEecchHhHhcccHHHHH
Confidence 24445555555422 122356789999999876543221 122333567799999999999876554
Q ss_pred --HHHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcC---CCHHHHHHHHhhhc
Q 015196 165 --VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP---MTKEFFSEYLKKEN 238 (411)
Q Consensus 165 --~~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 238 (411)
++..++. +++=++|||-...-. ++...|.-.|+.+..-... .+......|+
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~-------------------dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~---- 235 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVE-------------------DLARAGLRNPVRVSVKEKSKSATPSSLALEYL---- 235 (567)
T ss_pred HHHHHhcccccccccccchhhHHHH-------------------HHHHhhccCceeeeecccccccCchhhcceee----
Confidence 4444433 355567999863222 2222333333322111111 1111111111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------CCceeeCCCCHHHHHHHHHHhcC
Q 015196 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (411)
Q Consensus 239 ~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~~ 311 (411)
.+....|...+-.++.... ..++|||..+...++.....+ .+..+||.++...|..+++.|.+
T Consensus 236 -------v~~a~eK~~~lv~~L~~~~---~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 236 -------VCEADEKLSQLVHLLNNNK---DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred -------EecHHHHHHHHHHHHhccc---cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 1112234455555554443 679999999988888877776 35578999999999999999999
Q ss_pred CCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 312 ~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
. .-.+|+||+.+++|+|+|+++.||.+++| .+++.|++|.||.+|.|.
T Consensus 306 ~-~~~vl~~TDVaARGlDip~iD~VvQ~DpP-~~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 306 L-SNGVLFCTDVAARGLDIPGIDLVVQFDPP-KDPSSFVHRCGRTARAGR 353 (567)
T ss_pred c-cCceEEeehhhhccCCCCCceEEEecCCC-CChhHHHhhcchhhhccC
Confidence 5 88999999999999999999999999666 699999999999999995
No 47
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=7.5e-29 Score=233.52 Aligned_cols=344 Identities=18% Similarity=0.273 Sum_probs=240.8
Q ss_pred CCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHH---h---cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 25 QPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAAC---R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~---~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.|++||++.++=+.... ....++|...+|.|||...+..++ + +-+++||||| .+++.||+.||..|. ++.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~--p~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWW--PPF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhC--cce
Confidence 58999999999875321 235789999999999987555443 2 2368999999 678999999999994 445
Q ss_pred cEEEEcCchh-------------h-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc
Q 015196 98 QICRFTSDSK-------------E-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (411)
Q Consensus 98 ~v~~~~~~~~-------------~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~ 159 (411)
.+.++++... + .....+.|+++||+.++... +.+....|+++|+||.|++.+
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----------d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----------DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----------cccccccccEEEecCcccccC
Confidence 6666655332 1 12345789999999886542 334467899999999999998
Q ss_pred hhHH--HHHHhhccccEEEEeeecccCchhhhh-hhhhhccc--------------------------------------
Q 015196 160 HMFR--KVISLTKSHCKLGLTATLVREDERITD-LNFLIGPK-------------------------------------- 198 (411)
Q Consensus 160 ~~~~--~~~~~~~~~~~i~lSATp~~~~~~~~~-~~~~~~~~-------------------------------------- 198 (411)
+... .....++..++|.|||||..+.-.+.+ ++.+..|-
T Consensus 352 pns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 352 PNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred CccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 8443 344455677899999999876654322 11111110
Q ss_pred --------chhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhh------------------h----------
Q 015196 199 --------LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK------------------K---------- 242 (411)
Q Consensus 199 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~---------- 242 (411)
+...-..+... -.+....-..+.|.+.......|.+--.... +
T Consensus 432 Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 00001111111 1334445556777777765555442111100 0
Q ss_pred ----hhh-------hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----Cc--eeeCCCCHHHHHHH
Q 015196 243 ----QAL-------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KP--MIYGATSHVERTKI 305 (411)
Q Consensus 243 ----~~~-------~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~--~i~g~~~~~~r~~~ 305 (411)
... ......|+.++..|+.... .++.+++.|..++..+..+...|. .. -+.|.++...|..+
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHH
Confidence 000 0111236788888886544 578899999999988888777774 22 35799999999999
Q ss_pred HHHhcCCCCee-EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecC
Q 015196 306 LQAFKCSRDLN-TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (411)
Q Consensus 306 ~~~f~~~~~~~-vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~ 384 (411)
+++|+++..+. .|++|.+++-|+|+..++.||+++|.| |+++-.|..-|+-|+|++| .+.+|.|++.
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW-NPStD~QAreRawRiGQkk-----------dV~VYRL~t~ 657 (923)
T KOG0387|consen 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW-NPSTDNQARERAWRIGQKK-----------DVVVYRLMTA 657 (923)
T ss_pred HHhhcCCCceEEEEEEecccccccccccCceEEEECCCC-CCccchHHHHHHHhhcCcc-----------ceEEEEEecC
Confidence 99999874444 677799999999999999999986664 9999999999999999655 4999999999
Q ss_pred CchhHHHHHHH
Q 015196 385 DTQEMFYSTKR 395 (411)
Q Consensus 385 ~~~~~~~~~~r 395 (411)
+|+||-++.|+
T Consensus 658 gTIEEkiY~rQ 668 (923)
T KOG0387|consen 658 GTIEEKIYHRQ 668 (923)
T ss_pred CcHHHHHHHHH
Confidence 99999988665
No 48
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=7.9e-29 Score=231.52 Aligned_cols=293 Identities=19% Similarity=0.173 Sum_probs=181.4
Q ss_pred eEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchh-------------
Q 015196 46 GIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK------------- 107 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~------------- 107 (411)
+++.+|||+|||.+++.++.+ ...++++++|+++|+.|+.+.+..+++. .++.+++...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEF 78 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhH
Confidence 588999999999998887653 2468999999999999999999997653 2333322111
Q ss_pred -h---h------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH---HHHhhc--cc
Q 015196 108 -E---R------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VISLTK--SH 172 (411)
Q Consensus 108 -~---~------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~---~~~~~~--~~ 172 (411)
. . .....+|+++|++++......... .....+.....+++|+||+|.+....+.. .+..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~--~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 79 EHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFG--HYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccc--hHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 0 0 012367999999987654322100 00011112234799999999998753322 222222 45
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCc
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 252 (411)
++++||||+... +..++........ . ...+.. ... ... ...+. ........+
T Consensus 157 ~~i~~SATlp~~------l~~~~~~~~~~~~------~-~~~~~~--~~~-~~~---~~~~~---------~~~~~~~~~ 208 (358)
T TIGR01587 157 PILLMSATLPKF------LKEYAEKIGYVEF------N-EPLDLK--EER-RFE---RHRFI---------KIESDKVGE 208 (358)
T ss_pred CEEEEecCchHH------HHHHHhcCCCccc------c-cCCCCc--ccc-ccc---cccce---------eeccccccC
Confidence 789999998621 1111111000000 0 000000 000 000 00000 000001123
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------CceeeCCCCHHHHHH----HHHHhcCCCCeeEEEee
Q 015196 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTK----ILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 253 ~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------~~~i~g~~~~~~r~~----~~~~f~~~~~~~vlv~t 321 (411)
...+..+++... .+.++||||+++++++.+++.|. +..+||+++..+|.. +++.|+++ ..++||||
T Consensus 209 ~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT 285 (358)
T TIGR01587 209 ISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVAT 285 (358)
T ss_pred HHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEEC
Confidence 445555554432 46799999999999999998881 457899999998876 48899997 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~ 385 (411)
+++++|+|++ ++.+|.... +...|+|++||+||.|.++. +...+++|.....+
T Consensus 286 ~~~~~GiDi~-~~~vi~~~~---~~~~~iqr~GR~gR~g~~~~-------~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 286 QVIEASLDIS-ADVMITELA---PIDSLIQRLGRLHRYGRKNG-------ENFEVYIITIAPEG 338 (358)
T ss_pred cchhceeccC-CCEEEEcCC---CHHHHHHHhccccCCCCCCC-------CCCeEEEEeecCCC
Confidence 9999999996 777777522 47789999999999996533 33456666554443
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=234.00 Aligned_cols=306 Identities=19% Similarity=0.220 Sum_probs=213.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c---------------CCceEEEEcChhhHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---------------KKSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~---------------~~~~lil~P~~~l~~q~~~~ 87 (411)
..+.|+|+-++..+..+. ..+.+|+||+|||...+.++.. + ..+++|++|+++|+.|.+.+
T Consensus 95 ~~ptpvQk~sip~i~~Gr---dl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGR---DLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred cCCCcceeeccceeecCC---ceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 579999999999988765 7889999999999998887521 1 14799999999999999999
Q ss_pred HHHHhCCCCCcEEEEcCc-----hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc---
Q 015196 88 FKLWSTIQDDQICRFTSD-----SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--- 159 (411)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--- 159 (411)
-.++.....-.+....++ ......+.++|+|+|+..|.....++ .+......++|+|||+++.+
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g--------~i~l~~~k~~vLDEADrMlD~mg 243 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG--------KISLDNCKFLVLDEADRMLDEMG 243 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------eeehhhCcEEEecchHHhhhhcc
Confidence 999876554455554443 22234567999999999886654332 22224556999999999987
Q ss_pred --hhHHHHHHhhc-----cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHH
Q 015196 160 --HMFRKVISLTK-----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232 (411)
Q Consensus 160 --~~~~~~~~~~~-----~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (411)
+..++++.... .++.+++|||....-..... ..+.. . |..+.+.....
T Consensus 244 F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~-~fl~~--------------~------yi~laV~rvg~---- 298 (482)
T KOG0335|consen 244 FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAA-DFLKD--------------N------YIFLAVGRVGS---- 298 (482)
T ss_pred ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHH-HHhhc--------------c------ceEEEEeeecc----
Confidence 35566666553 34789999998754333110 00110 0 11111100000
Q ss_pred HHhhhchhhhhhhhhcCCCcHHHHHHHHH-Hhhh-----cCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHH
Q 015196 233 YLKKENSKKKQALYVMNPNKFRACEFLIR-FHEQ-----QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVE 301 (411)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~k~~~~~~l~~-~~~~-----~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~ 301 (411)
......+....+....|...+..++. .... ...++++|||++++.+..++..|. ..-+||..++.+
T Consensus 299 ---~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 299 ---TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred ---ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhH
Confidence 00001112222233333344444442 2110 112389999999999999999994 346899999999
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEE
Q 015196 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380 (411)
Q Consensus 302 r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~ 380 (411)
|...++.|+++ ...+||||+++++|+|+|++.+||.++-| .+..+|++||||.||.|. .+.-..|++
T Consensus 376 r~~al~~Fr~g-~~pvlVaT~VaaRGlDi~~V~hVInyDmP-~d~d~YvHRIGRTGR~Gn----------~G~atsf~n 442 (482)
T KOG0335|consen 376 REQALNDFRNG-KAPVLVATNVAARGLDIPNVKHVINYDMP-ADIDDYVHRIGRTGRVGN----------GGRATSFFN 442 (482)
T ss_pred HHHHHHHhhcC-CcceEEEehhhhcCCCCCCCceeEEeecC-cchhhHHHhccccccCCC----------CceeEEEec
Confidence 99999999998 99999999999999999999999998766 579999999999999997 455565555
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.2e-28 Score=229.56 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=205.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.+|+-|.++|..++... ++++.+|||.||++++-.++.-..+.+|||+|..+|++...+.+... |+ .+..+++
T Consensus 17 ~FR~gQ~evI~~~l~g~---d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~-Gi---~A~~lnS 89 (590)
T COG0514 17 SFRPGQQEIIDALLSGK---DTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAA-GI---RAAYLNS 89 (590)
T ss_pred ccCCCHHHHHHHHHcCC---cEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHc-Cc---eeehhhc
Confidence 67999999999999886 99999999999999999988888889999999999999989888885 44 3333443
Q ss_pred chhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc------hhHH---HHH
Q 015196 105 DSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFR---KVI 166 (411)
Q Consensus 105 ~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~------~~~~---~~~ 166 (411)
.... ...+..+++..+|+.+... .+.+.+...++.+++|||||.++. +.|. .+.
T Consensus 90 ~l~~~e~~~v~~~l~~g~~klLyisPErl~~~--------~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 90 TLSREERQQVLNQLKSGQLKLLYISPERLMSP--------RFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred ccCHHHHHHHHHHHhcCceeEEEECchhhcCh--------HHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 3211 1134578999999988763 566777778999999999999883 2343 344
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
..++...+++||||-...-.. ++...++ +..........+.++-.+..-. ..
T Consensus 162 ~~~~~~p~~AlTATA~~~v~~--DI~~~L~----------------l~~~~~~~~sfdRpNi~~~v~~-~~--------- 213 (590)
T COG0514 162 AGLPNPPVLALTATATPRVRD--DIREQLG----------------LQDANIFRGSFDRPNLALKVVE-KG--------- 213 (590)
T ss_pred hhCCCCCEEEEeCCCChHHHH--HHHHHhc----------------CCCcceEEecCCCchhhhhhhh-cc---------
Confidence 555666899998887532111 1111111 1111111111111111111100 00
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
..+ ..+..+.+ .....+...||||.+++.++.+++.| ++..+|++++..+|+.+.+.|..+ +++|+|||
T Consensus 214 ---~~~-~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVAT 287 (590)
T COG0514 214 ---EPS-DQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVAT 287 (590)
T ss_pred ---cHH-HHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEe
Confidence 000 11113332 11133566899999999999999999 356899999999999999999997 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+.++|||-|++..||.+..| .|...|+|-+||+||.|.
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP-~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLP-GSIESYYQETGRAGRDGL 326 (590)
T ss_pred ccccCccCCCCceEEEEecCC-CCHHHHHHHHhhccCCCC
Confidence 999999999999999998655 699999999999999886
No 51
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=226.63 Aligned_cols=295 Identities=18% Similarity=0.182 Sum_probs=206.6
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc----C----CceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI----K----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~----~----~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
..|.|.|..+|.-.+.+. +.+-+|.||+|||-..+.++. ++ . .+|||++|+++|+-|...-+++...+
T Consensus 202 ~~PTpIQ~a~IPvallgk---DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALLGK---DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCCchhhhcccHHhhcc---hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 368999999999776664 777899999999999777653 32 1 38999999999999987766555444
Q ss_pred CCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----H
Q 015196 95 QDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (411)
Q Consensus 95 ~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~ 165 (411)
....++..-|+.. ..+.+..+|+|+||..|.--.+. ...|.-..+-++|+|||+++....|.. +
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrN-------s~sf~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRN-------SPSFNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhcc-------CCCccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 4456776655432 23456789999999866332211 112223455689999999999875554 4
Q ss_pred HHhh-ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc--CCCHHHHHHHHhhhchhhh
Q 015196 166 ISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 166 ~~~~-~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (411)
+..+ +.++.+++|||....- .++..-..-.|+++ .+.. ........+|++....+
T Consensus 352 i~lcpk~RQTmLFSATMteeV-------------------kdL~slSL~kPvri-fvd~~~~~a~~LtQEFiRIR~~r-- 409 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATMTEEV-------------------KDLASLSLNKPVRI-FVDPNKDTAPKLTQEFIRIRPKR-- 409 (691)
T ss_pred HHhccccccceeehhhhHHHH-------------------HHHHHhhcCCCeEE-EeCCccccchhhhHHHheecccc--
Confidence 4444 4458899999986211 12221112233332 1111 12223444555321111
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
+..+...+..|+...- .++++||+.+.+.|.++.=.|+ ++-+||.+++.+|.+.++.|++. +++|
T Consensus 410 ------e~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidv 479 (691)
T KOG0338|consen 410 ------EGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDV 479 (691)
T ss_pred ------ccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCE
Confidence 1123345555554333 4679999999999888776663 56799999999999999999998 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
||||+.+++|+|++.+.+||.+..| .+...|++|+||..|.|.
T Consensus 480 LiaTDvAsRGLDI~gV~tVINy~mP-~t~e~Y~HRVGRTARAGR 522 (691)
T KOG0338|consen 480 LIATDVASRGLDIEGVQTVINYAMP-KTIEHYLHRVGRTARAGR 522 (691)
T ss_pred EEEechhhccCCccceeEEEeccCc-hhHHHHHHHhhhhhhccc
Confidence 9999999999999999999999666 699999999999999986
No 52
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.97 E-value=5.8e-28 Score=232.93 Aligned_cols=349 Identities=20% Similarity=0.236 Sum_probs=222.8
Q ss_pred CCCChhHHHHHHHHHhC---C----CCcceEEEcCCCCCHHHHHHHHHHhc-----C-----CceEEEEcChhhHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----K-----KSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~---~----~~~~~ll~~~tG~GKT~~a~~~~~~~-----~-----~~~lil~P~~~l~~q~~~ 86 (411)
..|||||++.++.+..+ . ....+++...+|+|||+..+..+..+ + .+.|||+| .+|+..|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 46999999999988432 1 45688999999999999987776432 3 68999999 679999999
Q ss_pred HHHHHhCCCCCcEEEEcCchhhhhc------------CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecC
Q 015196 87 QFKLWSTIQDDQICRFTSDSKERFR------------GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (411)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~------------~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~ 154 (411)
||.+|.+......-.+++...+.+. -...|.+.+|+.++ ...+.+....++++|+||.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~----------~~~~~il~~~~glLVcDEG 385 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETAS----------DYCRKILLIRPGLLVCDEG 385 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHH----------HHHHHHhcCCCCeEEECCC
Confidence 9999986533333344443332111 11345666666553 2345566789999999999
Q ss_pred CCCCch--hHHHHHHhhccccEEEEeeecccCchhh-hhhhhhhccc----------------chhhc------------
Q 015196 155 HVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPK----------------LYEAN------------ 203 (411)
Q Consensus 155 H~~~~~--~~~~~~~~~~~~~~i~lSATp~~~~~~~-~~~~~~~~~~----------------~~~~~------------ 203 (411)
|+..+. ...+.+..+.-.+.|.|||||..++-.+ -.+..+..|. ....+
T Consensus 386 HrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~ 465 (776)
T KOG0390|consen 386 HRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREE 465 (776)
T ss_pred CCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHH
Confidence 999976 4455677778889999999999877542 0011111111 00000
Q ss_pred -h---HHHH-----------hcCCcccceeEEEEcCCCH---HHHHHHHhh--hch----h------h------hhhh--
Q 015196 204 -W---LDLV-----------KGGFIANVQCAEVWCPMTK---EFFSEYLKK--ENS----K------K------KQAL-- 245 (411)
Q Consensus 204 -~---~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~----~------~------~~~~-- 245 (411)
+ ..++ -.+++.+..-+.+-+..+. +.+...... ... . - ...+
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~ 545 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLL 545 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcc
Confidence 1 1111 1134444443444444333 223333221 000 0 0 0000
Q ss_pred ------------------------hhcC---CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---C--Ccee
Q 015196 246 ------------------------YVMN---PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMI 293 (411)
Q Consensus 246 ------------------------~~~~---~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---~--~~~i 293 (411)
.... ..|+..+..++.........++.+..+.....+.+...+ + +..+
T Consensus 546 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rL 625 (776)
T KOG0390|consen 546 CEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRL 625 (776)
T ss_pred cccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEE
Confidence 0001 123344555543332122233444444444444444444 2 4468
Q ss_pred eCCCCHHHHHHHHHHhcCCC-CeeEE-EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCC
Q 015196 294 YGATSHVERTKILQAFKCSR-DLNTI-FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371 (411)
Q Consensus 294 ~g~~~~~~r~~~~~~f~~~~-~~~vl-v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~ 371 (411)
+|.++..+|+.+++.|++.+ ...|+ .++.++++|+++-.++.+|++++.| |++.-.|+++|+-|.|+
T Consensus 626 dG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW-NPa~d~QAmaR~~RdGQ---------- 694 (776)
T KOG0390|consen 626 DGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW-NPAVDQQAMARAWRDGQ---------- 694 (776)
T ss_pred cCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC-CchhHHHHHHHhccCCC----------
Confidence 99999999999999999982 32444 4489999999999999999997664 99999999999999995
Q ss_pred cceeEEEEEeecCCchhHHHHHHH
Q 015196 372 EEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 372 ~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
.+.+++|.|++.+|.||...+|+
T Consensus 695 -Kk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 695 -KKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred -cceEEEEEeecCCCchHHHHHHH
Confidence 45699999999999999988776
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=225.77 Aligned_cols=314 Identities=17% Similarity=0.185 Sum_probs=196.3
Q ss_pred CCCChhHHHHHHHHHhC------CCCcceEEEcCCCCCHHHHHHHHHHhc-C------CceEEEEcChhhHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI-K------KSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~------~~~~~~ll~~~tG~GKT~~a~~~~~~~-~------~~~lil~P~~~l~~q~~~~~~~ 90 (411)
-.++|.|...+.-++.. .++++.++.||||||||+.+..+|..+ . -+++|++|+++|+.|..+.|..
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 46899998888877432 136788999999999999977776433 2 2799999999999999999999
Q ss_pred HhCCCCCcEEEEcCchhh-----hh-----cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 91 WSTIQDDQICRFTSDSKE-----RF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~-----~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
+.....-.|+.+++...- .+ ....+|+|+|+..|..-.... ..|.-....++|+||++++...
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-------k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-------KSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-------CCcchhhceEEEechHHHHHHH
Confidence 875544456666664321 11 123599999999775433211 1111234568999999999987
Q ss_pred hHHHHH----HhhccccEEEE---------eeecccCchhhh-------hhhhhhcccchhhchHHHHhcCCcccceeEE
Q 015196 161 MFRKVI----SLTKSHCKLGL---------TATLVREDERIT-------DLNFLIGPKLYEANWLDLVKGGFIANVQCAE 220 (411)
Q Consensus 161 ~~~~~~----~~~~~~~~i~l---------SATp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
.|+.-+ ..++....+.+ +++|.-...... -+..++-+.........+..-..-.| +...
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P-rl~~ 389 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP-RLFH 389 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC-ceEE
Confidence 554322 11221111111 112211111000 00011111111111111111111111 1101
Q ss_pred E------EcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----
Q 015196 221 V------WCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----- 289 (411)
Q Consensus 221 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----- 289 (411)
+ ...+....-..++ ......|--.+..++...+ ..++|+|+++.+.+.+++..|.
T Consensus 390 v~~~~~~ryslp~~l~~~~v-----------v~~~~~kpl~~~~lI~~~k---~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 390 VSKPLIGRYSLPSSLSHRLV-----------VTEPKFKPLAVYALITSNK---LNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred eecccceeeecChhhhhcee-----------ecccccchHhHHHHHHHhh---cceEEEEecchHHHHHHHHHHHHHhcc
Confidence 1 1111111111111 0001122234455555544 7899999999999999998884
Q ss_pred ----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 290 ----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 290 ----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+..+.|..+...|.+.++.|..| ++++|||++++++|+|+.++++||.+++| .+...|++|+||.+|.|+
T Consensus 456 ~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcSD~laRGiDv~~v~~VINYd~P-~~~ktyVHR~GRTARAgq 529 (620)
T KOG0350|consen 456 DNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICSDALARGIDVNDVDNVINYDPP-ASDKTYVHRAGRTARAGQ 529 (620)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEehhhhhcCCcccccceEeecCCC-chhhHHHHhhcccccccC
Confidence 34577889999999999999998 99999999999999999999999999766 599999999999999997
No 54
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=227.80 Aligned_cols=293 Identities=15% Similarity=0.135 Sum_probs=210.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc---------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI---------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~---------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
..++..|+++|...+.+. +++=.|-||||||++.+.++. ++ +--+||++|+++|+.|.+..+.+...
T Consensus 90 v~~teiQ~~~Ip~aL~G~---DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGH---DVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred ccHHHHHHhhcchhccCc---ccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 478999999999988876 788889999999999777653 22 23699999999999999999988754
Q ss_pred CCCCcEEEEcCchhhh----hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----H
Q 015196 94 IQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (411)
Q Consensus 94 ~~~~~v~~~~~~~~~~----~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~ 165 (411)
...-..|.+-|+..-. -.++.+|+|||+..|..-.... ..|+-....++|+|||+++.+-.|.. +
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~-------~~f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDEN-------PNFSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhc-------CCCCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 4444456555543211 1356899999999765422100 11222345689999999999875554 4
Q ss_pred HHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcC---CCHHHHHHHHhhhchhh
Q 015196 166 ISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP---MTKEFFSEYLKKENSKK 241 (411)
Q Consensus 166 ~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 241 (411)
++.++. ++.+++|||+...-.....+ .+.++.++.+... ..++...+
T Consensus 240 i~~lP~~RQTLLFSATqt~svkdLaRL--------------------sL~dP~~vsvhe~a~~atP~~L~Q--------- 290 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKDLARL--------------------SLKDPVYVSVHENAVAATPSNLQQ--------- 290 (758)
T ss_pred HHhCChhheeeeeecccchhHHHHHHh--------------------hcCCCcEEEEeccccccChhhhhh---------
Confidence 455544 47899999997543321111 1222333333211 11111111
Q ss_pred hhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----C--CceeeCCCCHHHHHHHHHHhcCCCC
Q 015196 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----R--KPMIYGATSHVERTKILQAFKCSRD 314 (411)
Q Consensus 242 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~--~~~i~g~~~~~~r~~~~~~f~~~~~ 314 (411)
.-+......|+.++...+..|. ..+.|||..+.+++..++..| + +..+||.+++..|.++...|... .
T Consensus 291 -~y~~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~-~ 365 (758)
T KOG0343|consen 291 -SYVIVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK-R 365 (758)
T ss_pred -eEEEEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-c
Confidence 1122233456677777776665 778999999999999988887 3 34579999999999999999996 8
Q ss_pred eeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 315 ~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.-||+||+.+++|+|+|.++.||.++.| .+..+|++|+||..|+..
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCP-edv~tYIHRvGRtAR~~~ 411 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCP-EDVDTYIHRVGRTARYKE 411 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCc-hhHHHHHHHhhhhhcccC
Confidence 8999999999999999999999999877 499999999999999995
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=5.6e-28 Score=237.41 Aligned_cols=300 Identities=17% Similarity=0.167 Sum_probs=182.4
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC-
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ- 95 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~- 95 (411)
.++|+|||.+++..++.+. ...++.+|||+|||.+++...... ..++++++|+++|+.|..+++.++....
T Consensus 13 G~~PtpiQ~~~i~~il~G~--~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQ--PPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4569999999999998764 257778999999998643222211 1355567799999999999998876421
Q ss_pred ----------------------CCcEEEEcCchhh-----hhcCCCcEEEEecceecccCC-CC----hhhHH-HHHHHh
Q 015196 96 ----------------------DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGK-RS----EESEK-IIEEIR 142 (411)
Q Consensus 96 ----------------------~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~-~~----~~~~~-~~~~~~ 142 (411)
+..+..+.|+... ......+|+|+|.+++.+..- ++ ..... ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~-- 168 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGF-- 168 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhh--
Confidence 1234444554321 233557899999887755431 00 00000 0011
Q ss_pred cCCccEEEEecCCCCCc--hhHHHHHHhh--c----cccEEEEeeecccCchhhhhhhhhh-cccchhhchHHHHhcCCc
Q 015196 143 NREWGLLLMDEVHVVPA--HMFRKVISLT--K----SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFI 213 (411)
Q Consensus 143 ~~~~~lvIiDE~H~~~~--~~~~~~~~~~--~----~~~~i~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 213 (411)
-.+..++|+||||...+ .....++..+ . ..++++||||+....... ...+. .+..... ... .+
T Consensus 169 L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l--~~~~~~~p~~i~V-----~~~-~l 240 (844)
T TIGR02621 169 LGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDR--TTLLSAEDYKHPV-----LKK-RL 240 (844)
T ss_pred hccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHH--HHHHccCCceeec-----ccc-cc
Confidence 24567999999993322 1333334421 1 137999999996422111 00111 1111010 000 11
Q ss_pred ccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcH-HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---C
Q 015196 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R 289 (411)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---~ 289 (411)
........ .+.+.+. |. ..+..+..... ..+.++||||++++.++.+++.| +
T Consensus 241 ~a~ki~q~-v~v~~e~----------------------Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g 296 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEK----------------------FLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEK 296 (844)
T ss_pred cccceEEE-EecChHH----------------------HHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 10000011 1111100 11 11122222222 34678999999999999999998 4
Q ss_pred CceeeCCCCHHHHH-----HHHHHhcC----CC------CeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhh
Q 015196 290 KPMIYGATSHVERT-----KILQAFKC----SR------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354 (411)
Q Consensus 290 ~~~i~g~~~~~~r~-----~~~~~f~~----~~------~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~G 354 (411)
...+||++++.+|. .+++.|++ ++ ..+|||+|+++++|+|++. +++|.... ....|+||+|
T Consensus 297 ~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a---P~esyIQRiG 372 (844)
T TIGR02621 297 FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA---PFESMQQRFG 372 (844)
T ss_pred CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC---CHHHHHHHhc
Confidence 56789999999999 77899987 31 2689999999999999985 77777433 3678999999
Q ss_pred cccccCCC
Q 015196 355 RILRAKGK 362 (411)
Q Consensus 355 R~~R~~~~ 362 (411)
|++|.|..
T Consensus 373 RtgR~G~~ 380 (844)
T TIGR02621 373 RVNRFGEL 380 (844)
T ss_pred ccCCCCCC
Confidence 99999963
No 56
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.96 E-value=1.7e-27 Score=224.10 Aligned_cols=355 Identities=18% Similarity=0.267 Sum_probs=244.4
Q ss_pred CCcccCCCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHH
Q 015196 16 LNMELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 16 ~~~~~~~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~ 89 (411)
.+--+++.++|.|||.-.++-+.-. ...-++++...+|.|||..+++..+.+ .++-|||||..+ .+.|.++|.
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsST-leNWlrEf~ 468 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSST-LENWLREFA 468 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchh-HHHHHHHHH
Confidence 3445778899999999999876311 112477999999999999877776544 368999999876 788999999
Q ss_pred HHhCCCCCcEEEEcCchhhhh---------cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 90 LWSTIQDDQICRFTSDSKERF---------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~---------~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
+|+ |.-.|..++|...+.- ....+|+++||+.+.... .-..+|.+.+++++|+||+|.+.+-
T Consensus 469 kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k-------dDRsflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 469 KWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK-------DDRSFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred HhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh-------HHHHHHHhccccEEEecchhhhhcc
Confidence 994 4557777887543211 136899999999886432 2224556689999999999999854
Q ss_pred ---hHHHHHHhhccccEEEEeeecccCchhhhh-hhhhhcccchhhch--------------------------------
Q 015196 161 ---MFRKVISLTKSHCKLGLTATLVREDERITD-LNFLIGPKLYEANW-------------------------------- 204 (411)
Q Consensus 161 ---~~~~~~~~~~~~~~i~lSATp~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------- 204 (411)
.|+.++. +.+...|+|||||..++-.+.+ +..+.-|.++....
T Consensus 540 ~SeRy~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389|consen 540 TSERYKHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKT 618 (941)
T ss_pred chHHHHHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHH
Confidence 6665544 4788999999999877654311 11122222111111
Q ss_pred -----------HHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhch----------------------------------
Q 015196 205 -----------LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS---------------------------------- 239 (411)
Q Consensus 205 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 239 (411)
.++. +-+.|..-....|+++......|......
T Consensus 619 im~PFILRR~K~qVL--~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVL--KQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred hhhHHHHHHHHHHHH--HhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 1111 12233333444556655332222210000
Q ss_pred ------------------------hhhhhh-----------------------------hhcCCCcHHHHHHHHHHhhhc
Q 015196 240 ------------------------KKKQAL-----------------------------YVMNPNKFRACEFLIRFHEQQ 266 (411)
Q Consensus 240 ------------------------~~~~~~-----------------------------~~~~~~k~~~~~~l~~~~~~~ 266 (411)
...++. ..+.+.|.+.+..|+...+ .
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k-~ 775 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIK-K 775 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHh-h
Confidence 000000 0123457788888886666 5
Q ss_pred CCCeEEEEecChhHHHHHHHHh---CCce--eeCCCCHHHHHHHHHHhcCCCCee-EEEeeccCccccCccCccEEEEec
Q 015196 267 RGDKIIVFADNLFALTEYAMKL---RKPM--IYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIPEANVIIQIS 340 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l---~~~~--i~g~~~~~~r~~~~~~f~~~~~~~-vlv~t~~~~~Gid~~~~~~vi~~~ 340 (411)
.|+++++|..+...++.+.-.| +..+ +.|.+....|..+++.|.....+- .|.+|.++|-|+|+..+++||+++
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 6899999999987766665555 4444 579999999999999999984554 667799999999999999999886
Q ss_pred CCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHH
Q 015196 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 396 (411)
Q Consensus 341 ~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~ 396 (411)
..+ |+-.-.|.-.|++|.|+ .+++.+|.||..+|+||.+.+--+
T Consensus 856 ~dF-NP~dD~QAEDRcHRvGQ-----------tkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 856 IDF-NPYDDKQAEDRCHRVGQ-----------TKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred cCC-CCcccchhHHHHHhhCC-----------cceeEEEEEEecCcHHHHHHHHHH
Confidence 665 77777999999999995 556999999999999998774433
No 57
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-27 Score=205.36 Aligned_cols=329 Identities=17% Similarity=0.220 Sum_probs=218.5
Q ss_pred ccCCCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 19 ELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 19 ~~~~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
-+..+.+|.++|+.+-+.++.. ......+++|-||+|||-+....+ ...+.++.+.+|+...+-+...++++-+
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF-- 168 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAF-- 168 (441)
T ss_pred eeeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhh--
Confidence 4667789999999999998643 233589999999999999866654 4567899999999999999999998853
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc---hhHHHHHHh--h
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMFRKVISL--T 169 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~---~~~~~~~~~--~ 169 (411)
....+..++++..+.+. ..++|+|..++. ++ ..-||++|+||++.++- +...-.... -
T Consensus 169 ~~~~I~~Lyg~S~~~fr--~plvVaTtHQLl----------rF-----k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR--APLVVATTHQLL----------RF-----KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred ccCCeeeEecCCchhcc--ccEEEEehHHHH----------HH-----HhhccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 34578888888776554 667777766442 22 25678999999999873 222222221 1
Q ss_pred ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHH-hcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhc
Q 015196 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLV-KGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (411)
Q Consensus 170 ~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (411)
.....|.|||||.+.-.... .........+..-. +.....|.. ++.. .+...+.
T Consensus 232 ~~g~~IylTATp~k~l~r~~-----~~g~~~~~klp~RfH~~pLpvPkf---~w~~----~~~k~l~------------- 286 (441)
T COG4098 232 KEGATIYLTATPTKKLERKI-----LKGNLRILKLPARFHGKPLPVPKF---VWIG----NWNKKLQ------------- 286 (441)
T ss_pred ccCceEEEecCChHHHHHHh-----hhCCeeEeecchhhcCCCCCCCce---EEec----cHHHHhh-------------
Confidence 34478999999985333210 00011011110000 111111111 1111 1111221
Q ss_pred CCCcH--HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------CceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 249 NPNKF--RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 249 ~~~k~--~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
.+|+ ....+|-+.. ..+.+++||+++++.++++++.|. +..+|+... .|.+.++.|++| ++++||
T Consensus 287 -r~kl~~kl~~~lekq~--~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G-~~~lLi 360 (441)
T COG4098 287 -RNKLPLKLKRWLEKQR--KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDG-KITLLI 360 (441)
T ss_pred -hccCCHHHHHHHHHHH--hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcC-ceEEEE
Confidence 1111 2223333333 357899999999999999999982 345665544 789999999998 999999
Q ss_pred eeccCccccCccCccEEEEecCC-CCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHH
Q 015196 320 LSKVGDNSIDIPEANVIIQISSH-AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~~~-~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~ 398 (411)
+|.++++|+.+|++++.++-.-. .=+.+.++|+.||+||.-.- +...+.||. .-.+..+-.+++..+.
T Consensus 361 TTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~---------PtGdv~FFH--~G~skaM~~A~keIk~ 429 (441)
T COG4098 361 TTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER---------PTGDVLFFH--YGKSKAMKQARKEIKE 429 (441)
T ss_pred EeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC---------CCCcEEEEe--ccchHHHHHHHHHHHH
Confidence 99999999999999998875211 12688899999999998854 222333333 2345667788899999
Q ss_pred HhhcCCceeE
Q 015196 399 LIDQGYSFKV 408 (411)
Q Consensus 399 ~~~~g~~~~~ 408 (411)
+-++|++--.
T Consensus 430 MN~lg~k~~~ 439 (441)
T COG4098 430 MNKLGFKRGL 439 (441)
T ss_pred HHHHhhhccc
Confidence 9999886433
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=224.86 Aligned_cols=306 Identities=19% Similarity=0.170 Sum_probs=208.7
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH-H---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-A---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~-~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.-.|.|.|..++.+-+-.+ .+.+++.+|+||||+++-.+ + ..-+++.|+++|..+|++|-+++|+...+.-...
T Consensus 214 ~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglk 291 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLK 291 (830)
T ss_pred cceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccce
Confidence 4579999999999865544 48999999999999997665 3 3446899999999999999999998653211112
Q ss_pred EEEEcCc---------hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--------h
Q 015196 99 ICRFTSD---------SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------M 161 (411)
Q Consensus 99 v~~~~~~---------~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--------~ 161 (411)
+..--|. .......+++|+|+||+-+...++.+ -...+++.||+||+|.+... .
T Consensus 292 vairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---------~~lgdiGtVVIDEiHtL~deERG~RLdGL 362 (830)
T COG1202 292 VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---------KDLGDIGTVVIDEIHTLEDEERGPRLDGL 362 (830)
T ss_pred EEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---------CcccccceEEeeeeeeccchhcccchhhH
Confidence 2111110 11122356899999999775543221 11357889999999999864 2
Q ss_pred HHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhh
Q 015196 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (411)
Q Consensus 162 ~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (411)
..++...++..++|+||||-.++..... .++.....++ .--.|...+.+.+..
T Consensus 363 I~RLr~l~~~AQ~i~LSATVgNp~elA~----~l~a~lV~y~-------~RPVplErHlvf~~~---------------- 415 (830)
T COG1202 363 IGRLRYLFPGAQFIYLSATVGNPEELAK----KLGAKLVLYD-------ERPVPLERHLVFARN---------------- 415 (830)
T ss_pred HHHHHHhCCCCeEEEEEeecCChHHHHH----HhCCeeEeec-------CCCCChhHeeeeecC----------------
Confidence 3334444466799999999976544322 2221111110 011122222222111
Q ss_pred hhhhhhcCCCcHHHHHHHHHH------hhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhc
Q 015196 242 KQALYVMNPNKFRACEFLIRF------HEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFK 310 (411)
Q Consensus 242 ~~~~~~~~~~k~~~~~~l~~~------~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~ 310 (411)
...|...+..|.+. .+ .-..++|||++++..|.+++..|. +..+|++++-.+|..+...|.
T Consensus 416 -------e~eK~~ii~~L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 416 -------ESEKWDIIARLVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred -------chHHHHHHHHHHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 11222333333321 11 223589999999999999999994 567999999999999999999
Q ss_pred CCCCeeEEEeeccCccccCccCccEEE----EecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc
Q 015196 311 CSRDLNTIFLSKVGDNSIDIPEANVII----QISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 311 ~~~~~~vlv~t~~~~~Gid~~~~~~vi----~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~ 386 (411)
.+ ++.++|+|.+++.|+|+|.-.+++ | .-.|-|+..|.|+.||+||++ -+...-+|.++.++-
T Consensus 488 ~q-~l~~VVTTAAL~AGVDFPASQVIFEsLaM-G~~WLs~~EF~QM~GRAGRp~-----------yHdrGkVyllvepg~ 554 (830)
T COG1202 488 AQ-ELAAVVTTAALAAGVDFPASQVIFESLAM-GIEWLSVREFQQMLGRAGRPD-----------YHDRGKVYLLVEPGK 554 (830)
T ss_pred cC-CcceEeehhhhhcCCCCchHHHHHHHHHc-ccccCCHHHHHHHhcccCCCC-----------cccCceEEEEecCCh
Confidence 98 999999999999999999554443 2 233469999999999999999 667788999987764
Q ss_pred h
Q 015196 387 Q 387 (411)
Q Consensus 387 ~ 387 (411)
.
T Consensus 555 ~ 555 (830)
T COG1202 555 K 555 (830)
T ss_pred h
Confidence 3
No 59
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.4e-28 Score=206.98 Aligned_cols=301 Identities=18% Similarity=0.211 Sum_probs=211.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-HhcC-----CceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~~-----~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.++.|.|+.++.+++.+. +++=+|.||||||......+ .++. --.+|++|+++|+-|..+.|.........
T Consensus 28 ~~pTpiQ~~cIpkILeGr---dcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILEGR---DCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCchHhhhhHHHhccc---ccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 478999999999999986 88989999999999977765 4443 25899999999999999999876555566
Q ss_pred cEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHh----
Q 015196 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL---- 168 (411)
Q Consensus 98 ~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~---- 168 (411)
++.++.++.. ..+....+++++|++.+.-....... .. .+...+..++|+|||+++.+..|...+..
T Consensus 105 K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~--~~--~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~ 180 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLG--VC--SWIFQRLKFLVLDEADRVLAGCFPDILEGIEEC 180 (442)
T ss_pred eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCc--cc--hhhhhceeeEEecchhhhhccchhhHHhhhhcc
Confidence 7777777543 23456789999999988655432101 00 11135667999999999998866655444
Q ss_pred hccc-cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEE-cCCCHHHHHHHHhhhchhhhhhhh
Q 015196 169 TKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW-CPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 169 ~~~~-~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
++.. +.+++|||....... +++..... ++ .+.+..+. .+..+..+..|+ .
T Consensus 181 lP~~RQtLlfSATitd~i~q------l~~~~i~k---------~~--a~~~e~~~~vstvetL~q~yI-----------~ 232 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITDTIKQ------LFGCPITK---------SI--AFELEVIDGVSTVETLYQGYI-----------L 232 (442)
T ss_pred CCCccceEEEEeehhhHHHH------hhcCCccc---------cc--ceEEeccCCCCchhhhhhhee-----------e
Confidence 3443 789999998643222 22211100 00 00000000 011111122222 1
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
.....|...+-.++...+.+....++||+++..+++.++-.| ++..+|+.+++.+|...+.+|+++ ..+|||||
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~iliaT 311 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILIAT 311 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEEEe
Confidence 111112233444554444234668999999999999999887 356789999999999999999997 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+.+++|+|+|.++.|+.++-| .++..|++|+||..|.|.
T Consensus 312 DVAsRGLDIP~V~LVvN~diP-r~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIP-RDPKDYIHRVGRTARAGR 350 (442)
T ss_pred chhhcCCCCCceeEEEecCCC-CCHHHHHHhhcchhcccC
Confidence 999999999999999998554 699999999999999886
No 60
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.96 E-value=6.3e-29 Score=222.66 Aligned_cols=296 Identities=16% Similarity=0.161 Sum_probs=200.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
+|++.|+..+..++.+. +++..|-||+|||++.+.++.++ +-.++|+||+++|+.|...+.+..+..
T Consensus 104 ~MT~VQ~~ti~pll~gk---Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~ 180 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGK---DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKY 180 (543)
T ss_pred chhHHHHhhcCccCCCc---cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhh
Confidence 68999999999998876 89999999999999977765332 236999999999999999988877654
Q ss_pred C-CCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHh
Q 015196 95 Q-DDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (411)
Q Consensus 95 ~-~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~ 168 (411)
. ...++.+-|+.. +.+....+|+|+|+..|.-....... +-.....++|+|||+++.+-.|+.-+..
T Consensus 181 h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-------f~~r~~k~lvlDEADrlLd~GF~~di~~ 253 (543)
T KOG0342|consen 181 HESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-------FLFRNLKCLVLDEADRLLDIGFEEDVEQ 253 (543)
T ss_pred CCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-------chhhccceeEeecchhhhhcccHHHHHH
Confidence 4 344555544322 33456789999999977543322111 1112335899999999998766554443
Q ss_pred h-----ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcC-CCHHHHHHHHhhhchhhh
Q 015196 169 T-----KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-MTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 169 ~-----~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (411)
+ +.++.+++|||-...-.... .+.+.+ +...+.+. .......+-+ ...
T Consensus 254 Ii~~lpk~rqt~LFSAT~~~kV~~l~--------------------~~~L~~-d~~~v~~~d~~~~~The~l-----~Qg 307 (543)
T KOG0342|consen 254 IIKILPKQRQTLLFSATQPSKVKDLA--------------------RGALKR-DPVFVNVDDGGERETHERL-----EQG 307 (543)
T ss_pred HHHhccccceeeEeeCCCcHHHHHHH--------------------HHhhcC-CceEeecCCCCCcchhhcc-----cce
Confidence 3 33478999999863222111 111111 11111110 0000000000 000
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
.+......++..+-.+++.+. ...++||||.+.......++.|+ +.-+||+.++..|-.+..+|++. +--|
T Consensus 308 -yvv~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esgI 383 (543)
T KOG0342|consen 308 -YVVAPSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESGI 383 (543)
T ss_pred -EEeccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccce
Confidence 111111222334444444332 13799999999988777777763 55689999999999999999996 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+||+++++|+|+|+++.||.+++| +++.+|++|+||.+|.|.
T Consensus 384 L~cTDVaARGlD~P~V~~VvQ~~~P-~d~~~YIHRvGRTaR~gk 426 (543)
T KOG0342|consen 384 LVCTDVAARGLDIPDVDWVVQYDPP-SDPEQYIHRVGRTAREGK 426 (543)
T ss_pred EEecchhhccCCCCCceEEEEeCCC-CCHHHHHHHhccccccCC
Confidence 9999999999999999999998555 799999999999999664
No 61
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=234.91 Aligned_cols=320 Identities=15% Similarity=0.163 Sum_probs=209.7
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
+.-.|.+++...+..+ .+.+++||||+|||-+|+..|.++ +-++++++|.++|+.+..+.|.+.+
T Consensus 111 fN~iQS~vFp~aY~Sn--eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl 188 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSN--ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKL 188 (1230)
T ss_pred HHHHHHHhhhhhhcCC--CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhc
Confidence 5566888888888766 599999999999999998887543 2389999999999999999998876
Q ss_pred CCCCCcEEEEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHH--
Q 015196 93 TIQDDQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKV-- 165 (411)
Q Consensus 93 ~~~~~~v~~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~-- 165 (411)
+.-...|..++|+..- ......+|+|+||+++....+++.....+. ....|||+||+|.+.++ ....+
T Consensus 189 ~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~-----~~V~LviIDEVHlLhd~RGpvlEtiVa 263 (1230)
T KOG0952|consen 189 APLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALF-----SLVRLVIIDEVHLLHDDRGPVLETIVA 263 (1230)
T ss_pred ccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhh-----hheeeEEeeeehhhcCcccchHHHHHH
Confidence 5445678888886542 123468999999999988877665543333 35579999999999875 22221
Q ss_pred --H----HhhccccEEEEeeecccCchhhhhhhhh--hcccchhhchHHHHhcCCc-ccce--eEEEEcCCCHHHHHHHH
Q 015196 166 --I----SLTKSHCKLGLTATLVREDERITDLNFL--IGPKLYEANWLDLVKGGFI-ANVQ--CAEVWCPMTKEFFSEYL 234 (411)
Q Consensus 166 --~----~~~~~~~~i~lSATp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 234 (411)
. .....-+++|||||..+..+...++.-- .+-..+. .+|. .|.. ++..... ........+
T Consensus 264 Rtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd--------~~yRPvpL~~~~iG~k~~-~~~~~~~~~ 334 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFD--------QRYRPVPLTQGFIGIKGK-KNRQQKKNI 334 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeec--------ccccccceeeeEEeeecc-cchhhhhhH
Confidence 1 1123448999999998765554443211 1100000 1111 1111 1111111 000000000
Q ss_pred hhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh--------------------------
Q 015196 235 KKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------------------- 288 (411)
Q Consensus 235 ~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------------------------- 288 (411)
+. -....+++... .|.+++|||.++...-+.++.|
T Consensus 335 --------------d~---~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 335 --------------DE---VCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred --------------HH---HHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 00 12333444443 4778899998887766666555
Q ss_pred --CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCC---------CHHHHHHHhhccc
Q 015196 289 --RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG---------SRRQEAQRLGRIL 357 (411)
Q Consensus 289 --~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~---------s~~~~~Q~~GR~~ 357 (411)
+.+++|.++.-++|..+.+.|..| .++||+||..++.|+|+|.-.++|--.+-+. +..+.+|+.||||
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G-~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAG 474 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEG-HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAG 474 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcC-CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccC
Confidence 256789999999999999999998 9999999999999999995555543211111 1446799999999
Q ss_pred ccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 358 R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
|+.=++ .+.-+.+-..+..+.+.+
T Consensus 475 RPqFd~-----------~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 475 RPQFDS-----------SGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CCCCCC-----------CceEEEEecccHHHHHHH
Confidence 998432 244445555555555444
No 62
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=226.27 Aligned_cols=318 Identities=17% Similarity=0.184 Sum_probs=200.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-----------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-----------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
.|+..|+++|..++.+. ++++.++||+|||+.++.++-+ + +.-+||++|+++|+.|.++.+.+..
T Consensus 159 ~pTsVQkq~IP~lL~gr---D~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGR---DALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred ccchHhhcchhhhhcCc---ceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 58899999999999865 9999999999999999887632 2 2259999999999999999998875
Q ss_pred CCCC-CcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH--
Q 015196 93 TIQD-DQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-- 164 (411)
Q Consensus 93 ~~~~-~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~-- 164 (411)
.... ...+++-|+++ ..+.++.+|+|+|+..|..-+. ....+...+...+|+||++++..-.|.+
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLk-------nT~~i~~s~LRwlVlDEaDrlleLGfekdi 308 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLK-------NTKSIKFSRLRWLVLDEADRLLELGFEKDI 308 (708)
T ss_pred cCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHh-------ccchheeeeeeEEEecchhHHHhccchhhH
Confidence 4321 12234444332 3456788999999997754321 1223333456689999999998654433
Q ss_pred --HHHhhcc--------------ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCC-CH
Q 015196 165 --VISLTKS--------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TK 227 (411)
Q Consensus 165 --~~~~~~~--------------~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 227 (411)
++..+.. ...++||||....-....++. +-+|.....+ ... .+...........++. ..
T Consensus 309 t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~s-LkDpv~I~ld--~s~-~~~~p~~~a~~ev~~~~~~ 384 (708)
T KOG0348|consen 309 TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLS-LKDPVYISLD--KSH-SQLNPKDKAVQEVDDGPAG 384 (708)
T ss_pred HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcc-ccCceeeecc--chh-hhcCcchhhhhhcCCcccc
Confidence 3333211 245889999864333222211 1112211100 000 0000000000000000 00
Q ss_pred HHHHHHHhhhchhhhhhhhhcCCCcH---HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---------------
Q 015196 228 EFFSEYLKKENSKKKQALYVMNPNKF---RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (411)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~k~---~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------------- 289 (411)
+.+..+..-+....+.. .-|.|+ .....|.+..+.+...++|||....+.++--+..|.
T Consensus 385 ~~l~~~~iPeqL~qry~---vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~ 461 (708)
T KOG0348|consen 385 DKLDSFAIPEQLLQRYT---VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD 461 (708)
T ss_pred cccccccCcHHhhhceE---ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc
Confidence 00000110000011111 112232 233334454444557799999999888776666651
Q ss_pred ------------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhccc
Q 015196 290 ------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (411)
Q Consensus 290 ------------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~ 357 (411)
..-+||.+++++|..+++.|... .-.||+||+++++|+|+|++.+||.+++| .+..+|++|+||..
T Consensus 462 s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-~~~VLLcTDVAaRGLDlP~V~~vVQYd~P-~s~adylHRvGRTA 539 (708)
T KOG0348|consen 462 SEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-RRAVLLCTDVAARGLDLPHVGLVVQYDPP-FSTADYLHRVGRTA 539 (708)
T ss_pred cCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-cceEEEehhhhhccCCCCCcCeEEEeCCC-CCHHHHHHHhhhhh
Confidence 23489999999999999999996 77799999999999999999999999766 59999999999999
Q ss_pred ccCC
Q 015196 358 RAKG 361 (411)
Q Consensus 358 R~~~ 361 (411)
|.|.
T Consensus 540 RaG~ 543 (708)
T KOG0348|consen 540 RAGE 543 (708)
T ss_pred hccC
Confidence 9994
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=6.9e-28 Score=222.78 Aligned_cols=293 Identities=17% Similarity=0.184 Sum_probs=177.3
Q ss_pred hHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCC----CCCcEEEEcC
Q 015196 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQICRFTS 104 (411)
Q Consensus 29 ~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~v~~~~~ 104 (411)
||.++++++..+. ...+++.+|||+|||.+++.++.....++++++|+++|++|+.+.+.+++.. ....+..+++
T Consensus 1 hQ~~~~~~~~~~~-~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKD-ADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCC-CCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 7999999998764 1357889999999999999888777778999999999999999998887632 1233444444
Q ss_pred chhhh---h----------------------cCCCcEEEEecceecccCCCChhhHH-HHHHHhcCCccEEEEecCCCCC
Q 015196 105 DSKER---F----------------------RGNAGVVVTTYNMVAFGGKRSEESEK-IIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 105 ~~~~~---~----------------------~~~~~I~v~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
..... + .+...|+++|+++|....++.-.... ....+ ....++||+||+|.+.
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~-~~~~~~iV~DE~H~~~ 158 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGF-YTKFSTVIFDEFHLYD 158 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhh-hcCCCEEEEecccccC
Confidence 31100 0 12467888999988754322100000 00111 2467899999999988
Q ss_pred chh---------HHHHHHhh-ccccEEEEeeecccCchhhhhhhhh--hcccchh---h-----chHHHHhc----CCc-
Q 015196 159 AHM---------FRKVISLT-KSHCKLGLTATLVREDERITDLNFL--IGPKLYE---A-----NWLDLVKG----GFI- 213 (411)
Q Consensus 159 ~~~---------~~~~~~~~-~~~~~i~lSATp~~~~~~~~~~~~~--~~~~~~~---~-----~~~~~~~~----~~~- 213 (411)
... ...++... ...++++|||||... ....+... ++..... . +..++... ++.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 159 AKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA--LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH--HHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 532 11122211 135899999999632 11122111 1211100 0 00111100 110
Q ss_pred --ccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC--
Q 015196 214 --ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-- 289 (411)
Q Consensus 214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-- 289 (411)
.+....... ........+ ...+..+.+..+...+.++||||++++.++.+++.|.
T Consensus 237 ~~~~i~~~~~~---~~~~~~~~l------------------~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~ 295 (357)
T TIGR03158 237 VLPPVELELIP---APDFKEEEL------------------SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ 295 (357)
T ss_pred eccceEEEEEe---CCchhHHHH------------------HHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh
Confidence 111111110 111111111 0122333333322346799999999999999999984
Q ss_pred -----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhccc
Q 015196 290 -----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (411)
Q Consensus 290 -----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~ 357 (411)
+..+||.++..+|... + +.+|||||+++++|+|++.. .+|+ . | .+...|+||+||+|
T Consensus 296 ~~~~~~~~l~g~~~~~~R~~~------~-~~~iLVaTdv~~rGiDi~~~-~vi~-~-p-~~~~~yiqR~GR~g 357 (357)
T TIGR03158 296 GLGDDIGRITGFAPKKDRERA------M-QFDILLGTSTVDVGVDFKRD-WLIF-S-A-RDAAAFWQRLGRLG 357 (357)
T ss_pred CCCceEEeeecCCCHHHHHHh------c-cCCEEEEecHHhcccCCCCc-eEEE-C-C-CCHHHHhhhcccCC
Confidence 2357899998887643 3 67999999999999999976 5554 3 3 48899999999986
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=5.1e-28 Score=250.74 Aligned_cols=291 Identities=18% Similarity=0.189 Sum_probs=179.9
Q ss_pred EEcCCCCCHHHHHHHHH-Hhc---------------CCceEEEEcChhhHHHHHHHHHHHh----------C--CCCCcE
Q 015196 48 IVLPCGAGKSLVGVSAA-CRI---------------KKSCLCLATNAVSVDQWAFQFKLWS----------T--IQDDQI 99 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~-~~~---------------~~~~lil~P~~~l~~q~~~~~~~~~----------~--~~~~~v 99 (411)
|++|||||||++++..+ .++ +.++|||+|+++|+.|..+++...+ + .....+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 47999999999988753 221 2479999999999999998876421 1 123467
Q ss_pred EEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh--------HHHHH
Q 015196 100 CRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--------FRKVI 166 (411)
Q Consensus 100 ~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~--------~~~~~ 166 (411)
+..+|+... ...+..+|+|+|+++|...... +....+ .+..+||+||+|.+.+.. ..++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-----k~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~ 153 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-----RARETL--RGVETVIIDEVHAVAGSKRGAHLALSLERLD 153 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-----hhhhhh--ccCCEEEEecHHHhcccccccHHHHHHHHHH
Confidence 777775332 1234689999999988764321 111122 567899999999998642 22232
Q ss_pred Hhh-ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCH-HHHHHHHhhhchhhhhh
Q 015196 167 SLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQA 244 (411)
Q Consensus 167 ~~~-~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 244 (411)
..+ ...++|+||||..+... +..+++... .. .++......+.... +.++... ....... .........
T Consensus 154 ~l~~~~~QrIgLSATI~n~ee----vA~~L~g~~-pv---~Iv~~~~~r~~~l~-v~vp~~d~~~~~~~~-~~~~~~~~~ 223 (1490)
T PRK09751 154 ALLHTSAQRIGLSATVRSASD----VAAFLGGDR-PV---TVVNPPAMRHPQIR-IVVPVANMDDVSSVA-SGTGEDSHA 223 (1490)
T ss_pred HhCCCCCeEEEEEeeCCCHHH----HHHHhcCCC-CE---EEECCCCCcccceE-EEEecCchhhccccc-cccccccch
Confidence 332 23589999999975332 222222100 00 00001111111111 1111110 0000000 000000000
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----------------------------------
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----------------------------------- 289 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----------------------------------- 289 (411)
.........+...++.... .+.++||||+++..++.++..|+
T Consensus 224 -~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1490)
T PRK09751 224 -GREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSD 300 (1490)
T ss_pred -hhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccccc
Confidence 0000000011122333222 35789999999999998887763
Q ss_pred ---CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccC
Q 015196 290 ---KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 290 ---~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
+..+||+++.++|..+++.|++| .+++||||++++.|||++++++||++..| .|...|+||+||+||..
T Consensus 301 ~~ia~~HHGsLSkeeR~~IE~~fK~G-~LrvLVATssLELGIDIg~VDlVIq~gsP-~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 301 VFIARSHHGSVSKEQRAITEQALKSG-ELRCVVATSSLELGIDMGAVDLVIQVATP-LSVASGLQRIGRAGHQV 372 (1490)
T ss_pred ceeeeeccccCCHHHHHHHHHHHHhC-CceEEEeCcHHHccCCcccCCEEEEeCCC-CCHHHHHHHhCCCCCCC
Confidence 23688999999999999999998 99999999999999999999999998766 59999999999999975
No 65
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.96 E-value=7.5e-28 Score=229.58 Aligned_cols=368 Identities=18% Similarity=0.270 Sum_probs=254.2
Q ss_pred CCCChhHHHHHHHHHh----------CCCCcceEEEcCCCCCHHHHHHHHHH------hcC-CceEEEEcChhhHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFG----------NGRARSGIIVLPCGAGKSLVGVSAAC------RIK-KSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~----------~~~~~~~ll~~~tG~GKT~~a~~~~~------~~~-~~~lil~P~~~l~~q~~~ 86 (411)
.+|.|||...++.|.. ..+...|+|.+.+|.|||+..+..+. +++ +++|||||... +..|+.
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt-~~NW~~ 745 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNT-ALNWMN 745 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHH-HHHHHH
Confidence 5899999999987732 12335788899999999998665542 233 69999999765 778999
Q ss_pred HHHHHhCC-CC-CcEEE--EcC--------chhhhhcCCCcEEEEecceecccCCCC-----hhhHHHHHHHhcCCccEE
Q 015196 87 QFKLWSTI-QD-DQICR--FTS--------DSKERFRGNAGVVVTTYNMVAFGGKRS-----EESEKIIEEIRNREWGLL 149 (411)
Q Consensus 87 ~~~~~~~~-~~-~~v~~--~~~--------~~~~~~~~~~~I~v~t~~~l~~~~~~~-----~~~~~~~~~~~~~~~~lv 149 (411)
+|.+|..- .. ..+.+ +.. .....|...+.|.|.-|++++...... +....+...+-...+|+|
T Consensus 746 EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~v 825 (1567)
T KOG1015|consen 746 EFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFV 825 (1567)
T ss_pred HHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeE
Confidence 99999742 11 12222 221 111345667899999999998874322 112233444456789999
Q ss_pred EEecCCCCCch--hHHHHHHhhccccEEEEeeecccCchhh---------------------------------------
Q 015196 150 LMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI--------------------------------------- 188 (411)
Q Consensus 150 IiDE~H~~~~~--~~~~~~~~~~~~~~i~lSATp~~~~~~~--------------------------------------- 188 (411)
|+||+|.+.+. ...+.+..+...+.|+|||||..+.-.+
T Consensus 826 VCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~D 905 (1567)
T KOG1015|consen 826 VCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVD 905 (1567)
T ss_pred EecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHH
Confidence 99999999976 5556677777788999999997654310
Q ss_pred --------hhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCH---HHHHHHHhhhc-------h-----------
Q 015196 189 --------TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK---EFFSEYLKKEN-------S----------- 239 (411)
Q Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~----------- 239 (411)
..+..++...+...++.-+ ..++.|...+.+.+.++. ..|..|+.-.. .
T Consensus 906 Vr~Mk~RsHILye~LkgcVqRkDy~Vl--tk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~d 983 (1567)
T KOG1015|consen 906 VRVMKKRSHILYEMLKGCVQRKDYTVL--TKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQD 983 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh--cccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHH
Confidence 0011111111112222222 235666666666655544 22333332000 0
Q ss_pred --------------------------------------------------------------------------h-----
Q 015196 240 --------------------------------------------------------------------------K----- 240 (411)
Q Consensus 240 --------------------------------------------------------------------------~----- 240 (411)
.
T Consensus 984 fqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~ 1063 (1567)
T KOG1015|consen 984 FQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVI 1063 (1567)
T ss_pred HHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhh
Confidence 0
Q ss_pred ---------------------hh---hhh----------------------------hhcCCCcHHHHHHHHHHhhhcCC
Q 015196 241 ---------------------KK---QAL----------------------------YVMNPNKFRACEFLIRFHEQQRG 268 (411)
Q Consensus 241 ---------------------~~---~~~----------------------------~~~~~~k~~~~~~l~~~~~~~~~ 268 (411)
.. .++ ....+.|+-++..|+..++ .-|
T Consensus 1064 k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mce-eIG 1142 (1567)
T KOG1015|consen 1064 KVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCE-EIG 1142 (1567)
T ss_pred hhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHH-Hhc
Confidence 00 000 0112345566777777776 779
Q ss_pred CeEEEEecChhHHHHHHHHhC---------------------------CceeeCCCCHHHHHHHHHHhcCCCCee---EE
Q 015196 269 DKIIVFADNLFALTEYAMKLR---------------------------KPMIYGATSHVERTKILQAFKCSRDLN---TI 318 (411)
Q Consensus 269 ~~~ivf~~~~~~~~~l~~~l~---------------------------~~~i~g~~~~~~r~~~~~~f~~~~~~~---vl 318 (411)
+++|||.++...++.+..+|. -.-+.|......|+.....|++..+.+ .|
T Consensus 1143 DKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~L 1222 (1567)
T KOG1015|consen 1143 DKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFL 1222 (1567)
T ss_pred ceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEE
Confidence 999999999999888888771 123678889999999999999974444 78
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHH
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~ 398 (411)
|+|.+++-|+|+-.++.||+++..| |++.-.|.|-|+.|.|+.| ++|+|.|++.+|+|+.+++|+
T Consensus 1223 ISTRAGsLGiNLvAANRVIIfDasW-NPSyDtQSIFRvyRfGQtK-----------PvyiYRfiAqGTmEeKIYkRQ--- 1287 (1567)
T KOG1015|consen 1223 ISTRAGSLGINLVAANRVIIFDASW-NPSYDTQSIFRVYRFGQTK-----------PVYIYRFIAQGTMEEKIYKRQ--- 1287 (1567)
T ss_pred EeeccCccccceeecceEEEEeccc-CCccchHHHHHHHhhcCcC-----------ceeehhhhhcccHHHHHHHHH---
Confidence 9999999999999999888886554 9999999999999999655 599999999999999999998
Q ss_pred HhhcCCceeEee
Q 015196 399 LIDQGYSFKVHH 410 (411)
Q Consensus 399 ~~~~g~~~~~~~ 410 (411)
+.+||..+||+|
T Consensus 1288 VTKqsls~RVVD 1299 (1567)
T KOG1015|consen 1288 VTKQSLSFRVVD 1299 (1567)
T ss_pred HhHhhhhhhhhh
Confidence 899999999987
No 66
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.9e-29 Score=209.78 Aligned_cols=288 Identities=17% Similarity=0.183 Sum_probs=201.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hcC-----CceEEEEcChhhHHHHHH---HHHHHhCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-----KSCLCLATNAVSVDQWAF---QFKLWSTIQ 95 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~~-----~~~lil~P~~~l~~q~~~---~~~~~~~~~ 95 (411)
.|.|.|.+++...+.+. +.+.-|..|+|||-....+.. +.+ -..++++|+++|+-|... ++.+..+
T Consensus 107 kPSPiQeesIPiaLtGr---diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-- 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGR---DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-- 181 (459)
T ss_pred CCCCccccccceeecch---hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC--
Confidence 68899999998888775 788889999999998766643 332 268999999999877554 5555444
Q ss_pred CCcEEEEcCchh--h---hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-
Q 015196 96 DDQICRFTSDSK--E---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT- 169 (411)
Q Consensus 96 ~~~v~~~~~~~~--~---~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~- 169 (411)
..+-+..|+.. + .+....+++|+|+..+....+++ ... -.+..++|+|||+.+.+..|...+..+
T Consensus 182 -i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg------Va~--ls~c~~lV~DEADKlLs~~F~~~~e~li 252 (459)
T KOG0326|consen 182 -IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG------VAD--LSDCVILVMDEADKLLSVDFQPIVEKLI 252 (459)
T ss_pred -eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc------ccc--chhceEEEechhhhhhchhhhhHHHHHH
Confidence 34555555322 1 23456789999998665432211 111 135678999999999998666555443
Q ss_pred ----ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 170 ----KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 170 ----~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
+.++++++|||....-. .+.. .++..+....+.-++......+|. .
T Consensus 253 ~~lP~~rQillySATFP~tVk-------------------~Fm~-~~l~kPy~INLM~eLtl~GvtQyY----------a 302 (459)
T KOG0326|consen 253 SFLPKERQILLYSATFPLTVK-------------------GFMD-RHLKKPYEINLMEELTLKGVTQYY----------A 302 (459)
T ss_pred HhCCccceeeEEecccchhHH-------------------HHHH-HhccCcceeehhhhhhhcchhhhe----------e
Confidence 34588999999763211 1111 122222111111111111111111 1
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
+..+..|+..+..|..... -++.||||++...++.+++.. ...++|+.+-++.|..+..+|++| ..+.|||
T Consensus 303 fV~e~qKvhCLntLfskLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVc 378 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVC 378 (459)
T ss_pred eechhhhhhhHHHHHHHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeee
Confidence 2223456667777775554 567899999999999999976 356899999999999999999998 9999999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+.+.+|+|++.+++||.++.| ++..+|.+|+||.||.|.
T Consensus 379 tDL~TRGIDiqavNvVINFDfp-k~aEtYLHRIGRsGRFGh 418 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDFP-KNAETYLHRIGRSGRFGH 418 (459)
T ss_pred hhhhhcccccceeeEEEecCCC-CCHHHHHHHccCCccCCC
Confidence 9999999999999999999665 799999999999999995
No 67
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=204.75 Aligned_cols=308 Identities=16% Similarity=0.175 Sum_probs=209.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
+|...|..|+.-++.+ ++++.+-.+..|+|||.+..... .+. ...+++++|+++|+.|..+-+.+-.......
T Consensus 112 kPskIQe~aLPlll~~-Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAE-PPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred CcchHHHhhcchhhcC-CchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 4677888888887775 45788888999999998865543 333 2478999999999999888777654332112
Q ss_pred EE-EEcCc-hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hHHHHHHhhc-
Q 015196 99 IC-RFTSD-SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK- 170 (411)
Q Consensus 99 v~-~~~~~-~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~~~~~~~~~- 170 (411)
.. .+.++ ..+.-.=..+|+++|+..+.... ..+..+...++.++|+|||+.+.+. ...++...++
T Consensus 191 a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm-------~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLM-------LKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCCcchhheeeCCCccHHHHH-------HHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 21 12222 11111112579999999876432 2335555677889999999998865 2333455554
Q ss_pred cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc-CCCHHHHHHHHhhhchhhhhhhhhcC
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKKQALYVMN 249 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (411)
..+++.+|||....-.. +. ...+.+.....+.. ++.-+...+ -+..+...
T Consensus 264 ~~QllLFSATf~e~V~~------Fa--------------~kivpn~n~i~Lk~eel~L~~IkQ---------lyv~C~~~ 314 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAA------FA--------------LKIVPNANVIILKREELALDNIKQ---------LYVLCACR 314 (477)
T ss_pred cceEEeeechhHHHHHH------HH--------------HHhcCCCceeeeehhhccccchhh---------heeeccch
Confidence 55889999998521111 00 11222222222211 111111111 11223333
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~ 324 (411)
..|.+++..|..... -.+.||||.+...+.+++..+ .+.++||.+..++|+.++..|++| ..+|||+|+.+
T Consensus 315 ~~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLitTnV~ 390 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLITTNVC 390 (477)
T ss_pred hhHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEEEechh
Confidence 456677777665544 457899999999999999999 478999999999999999999998 99999999999
Q ss_pred ccccCccCccEEEEecCCC-----CCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc
Q 015196 325 DNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~~~-----~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~ 386 (411)
++|+|++.+++||.++-|. .+...|++|+||.||.|. ....++++..+.
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGk-------------kG~a~n~v~~~~ 444 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGK-------------KGLAINLVDDKD 444 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccc-------------cceEEEeecccC
Confidence 9999999999999984332 258899999999999996 355667776443
No 68
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.5e-28 Score=211.74 Aligned_cols=292 Identities=16% Similarity=0.224 Sum_probs=207.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-----------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
+|.|.|.+|..-++++. +++-+|.||+|||+..+..- .++ ...+|+++|+++|+.|...+..++.
T Consensus 242 KPtPIqSQaWPI~LQG~---DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGI---DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred CCCcchhcccceeecCc---ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 69999999999988876 88999999999999987762 111 2379999999999999998888774
Q ss_pred CCCCCcEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHH
Q 015196 93 TIQDDQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (411)
Q Consensus 93 ~~~~~~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~ 164 (411)
-.....++++.++... .+.+...|+++|+..|-... ....++-..+.++|+|||+++.+- ..++
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~--------~~n~i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQ--------MDNVINLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhh--------hcCeeeeeeeEEEEecchhhhhcccccHHHHH
Confidence 3333456666665443 34567899999999774331 112233346678999999999864 5555
Q ss_pred HHHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEE-EcCCCHHHHHHHHhhhchhhh
Q 015196 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 165 ~~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 242 (411)
++..+++ +++++-|||=...-.... +.|+..+....+ ..++ ......+
T Consensus 391 illdiRPDRqtvmTSATWP~~VrrLa--------------------~sY~Kep~~v~vGsLdL----------~a~~sVk 440 (629)
T KOG0336|consen 391 ILLDIRPDRQTVMTSATWPEGVRRLA--------------------QSYLKEPMIVYVGSLDL----------VAVKSVK 440 (629)
T ss_pred HhhhcCCcceeeeecccCchHHHHHH--------------------HHhhhCceEEEecccce----------eeeeeee
Confidence 5555444 567888888542211111 112221111000 0000 0000011
Q ss_pred h-hhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCee
Q 015196 243 Q-ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (411)
Q Consensus 243 ~-~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~ 316 (411)
+ .+...+..|...+..+++.. ...+|+||||.....++.|...|. ...+||...+.+|+..++.|++| .++
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vr 517 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVR 517 (629)
T ss_pred eeEEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceE
Confidence 1 11222233455666666555 357899999999999999998883 45799999999999999999998 999
Q ss_pred EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 317 vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||+|+.+++|+|+|++.+|+.++.| .+...|++|+||.||.|.
T Consensus 518 ILvaTDlaSRGlDv~DiTHV~NyDFP-~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 518 ILVATDLASRGLDVPDITHVYNYDFP-RNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred EEEEechhhcCCCchhcceeeccCCC-ccHHHHHHHhcccccCCC
Confidence 99999999999999999999999766 699999999999999996
No 69
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.96 E-value=5.5e-27 Score=229.27 Aligned_cols=345 Identities=18% Similarity=0.280 Sum_probs=241.8
Q ss_pred CCCCChhHHHHHHHH-HhCCCCcceEEEcCCCCCHHHHHHHHHHh----c--------CCceEEEEcChhhHHHHHHHHH
Q 015196 23 HAQPRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKSLVGVSAACR----I--------KKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~-~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~--------~~~~lil~P~~~l~~q~~~~~~ 89 (411)
+-+||.||++.++=+ +-+.+.-+++++..+|.|||+.++.+++. . ..+.||+||+ +|+..|..|+.
T Consensus 973 ~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 973 SAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred hHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 367999999999865 33334468899999999999987776531 1 1258999995 69999999999
Q ss_pred HHhCCCCCcEEEEcCc--hhhhh---cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hH
Q 015196 90 LWSTIQDDQICRFTSD--SKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MF 162 (411)
Q Consensus 90 ~~~~~~~~~v~~~~~~--~~~~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~ 162 (411)
+|+.. -++..+.|. .+... .++++|+|++|+.+++. ...+.+..|.++|+||.|-+.+. ..
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD----------~d~l~~~~wNYcVLDEGHVikN~ktkl 1119 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRND----------VDYLIKIDWNYCVLDEGHVIKNSKTKL 1119 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHH----------HHHHHhcccceEEecCcceecchHHHH
Confidence 99754 223333322 11111 24579999999988653 25566678899999999999976 33
Q ss_pred HHHHHhhccccEEEEeeecccCchhhhh-hhhhhcccc------------------------------------------
Q 015196 163 RKVISLTKSHCKLGLTATLVREDERITD-LNFLIGPKL------------------------------------------ 199 (411)
Q Consensus 163 ~~~~~~~~~~~~i~lSATp~~~~~~~~~-~~~~~~~~~------------------------------------------ 199 (411)
.+....+.+.+++.|||||..+...+.| ++.+..|..
T Consensus 1120 ~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1120 TKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred HHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 4466777888999999999988765422 222222210
Q ss_pred hhhchHHHHhc--CCcccceeEEEEcCCCHHH---HHHHHhhhc------------hhh-------hhhh----------
Q 015196 200 YEANWLDLVKG--GFIANVQCAEVWCPMTKEF---FSEYLKKEN------------SKK-------KQAL---------- 245 (411)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~-------~~~~---------- 245 (411)
..+-+..++++ .-+.|..+..++|++++.. |+.+..+.. ... ....
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 00000111100 2344556667777776643 444443300 000 0000
Q ss_pred -------------------------hhcCCCcHHHHHHHHHHhhhc-------------CCCeEEEEecChhHHHHHHHH
Q 015196 246 -------------------------YVMNPNKFRACEFLIRFHEQQ-------------RGDKIIVFADNLFALTEYAMK 287 (411)
Q Consensus 246 -------------------------~~~~~~k~~~~~~l~~~~~~~-------------~~~~~ivf~~~~~~~~~l~~~ 287 (411)
-..+..|+.+++.|+..+... .+.+++|||+....++.+.+.
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 012344678888888766532 346899999999999998888
Q ss_pred h------CCc--eeeCCCCHHHHHHHHHHhcCCCCeeEEEe-eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccc
Q 015196 288 L------RKP--MIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358 (411)
Q Consensus 288 l------~~~--~i~g~~~~~~r~~~~~~f~~~~~~~vlv~-t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R 358 (411)
| .+. .+.|..++..|.++.++|++++.++||+- |..+|-|+|+..++.||++. .-+|+..-+|.+.||+|
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvE-HDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVE-HDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEe-cCCCchhhHHHHHHHHh
Confidence 7 233 46799999999999999999988997776 79999999999999999984 33488888999999999
Q ss_pred cCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 359 ~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
.| |.+.+.+|.++.++|.||.++
T Consensus 1439 IG-----------QKrvVNVyRlItrGTLEEKVM 1461 (1549)
T KOG0392|consen 1439 IG-----------QKRVVNVYRLITRGTLEEKVM 1461 (1549)
T ss_pred hc-----------CceeeeeeeehhcccHHHHHh
Confidence 99 566899999999999998766
No 70
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.96 E-value=5.5e-27 Score=229.99 Aligned_cols=345 Identities=17% Similarity=0.282 Sum_probs=242.7
Q ss_pred CCCCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHH------hcCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 22 PHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAAC------RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~------~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
...+||+||.+.++=++... ...++++...+|.|||+..+..+. +..+++|+++|..+ +..|.++|..|...
T Consensus 367 ~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~~m 445 (1373)
T KOG0384|consen 367 GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWTDM 445 (1373)
T ss_pred ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHhhh
Confidence 33689999999999875431 224899999999999998666543 24579999999766 77899999999854
Q ss_pred CCCcEEEEcCchhh--------hh-cC-----CCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 95 QDDQICRFTSDSKE--------RF-RG-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 95 ~~~~v~~~~~~~~~--------~~-~~-----~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
++.++.|+... .+ .. ..+++++||+.+.... ..+..-.+.++++||||++.+.
T Consensus 446 ---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----------~~L~~i~w~~~~vDeahrLkN~ 512 (1373)
T KOG0384|consen 446 ---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----------AELSKIPWRYLLVDEAHRLKND 512 (1373)
T ss_pred ---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----------hhhccCCcceeeecHHhhcCch
Confidence 45566654331 11 11 3689999999886542 5666678899999999999965
Q ss_pred ---hHHHHHHhhccccEEEEeeecccCchhhhh-hhhhhcccchhh--------------chHHH------------H--
Q 015196 161 ---MFRKVISLTKSHCKLGLTATLVREDERITD-LNFLIGPKLYEA--------------NWLDL------------V-- 208 (411)
Q Consensus 161 ---~~~~~~~~~~~~~~i~lSATp~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~------------~-- 208 (411)
.|. .+..++..+.+++|+||..+.-.+.+ +.++..|.-+.. .+..+ +
T Consensus 513 ~~~l~~-~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 513 ESKLYE-SLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred HHHHHH-HHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 444 46667888899999999987665433 111222211100 00011 0
Q ss_pred hcCCcccceeEEEEcCCC---HHHHHHHHhhhch--------hh------------------------------------
Q 015196 209 KGGFIANVQCAEVWCPMT---KEFFSEYLKKENS--------KK------------------------------------ 241 (411)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~------------------------------------ 241 (411)
..+.+.+..-..+.++++ ..+|+..+.+.-. ..
T Consensus 592 vekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~ 671 (1373)
T KOG0384|consen 592 VEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMR 671 (1373)
T ss_pred hccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcch
Confidence 012233333334444443 4555555543211 00
Q ss_pred --hhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCC-----ceeeCCCCHHHHHHHHHHhcCC--
Q 015196 242 --KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCS-- 312 (411)
Q Consensus 242 --~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~r~~~~~~f~~~-- 312 (411)
.......++.|+-.++.|+...+ ..|.++|||.+-+..++.|+++|.. .-+.|....+.|...++.|+..
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCC
Confidence 00111223344445566665444 6789999999999999999999932 3478999999999999999997
Q ss_pred CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 313 ~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
+.+-.|+||.++|-|||+-.++.||+|++.| |++.-+|+..|++|.|++| .+.+|.||..+|.|+++-
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDW-NPQNDLQAqARaHRIGQkk-----------~VnVYRLVTk~TvEeEil 818 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAQARAHRIGQKK-----------HVNVYRLVTKNTVEEEIL 818 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCC-CcchHHHHHHHHHhhcccc-----------eEEEEEEecCCchHHHHH
Confidence 5677999999999999999999999997775 9999999999999999654 599999999999998877
Q ss_pred HH
Q 015196 393 TK 394 (411)
Q Consensus 393 ~~ 394 (411)
+|
T Consensus 819 ER 820 (1373)
T KOG0384|consen 819 ER 820 (1373)
T ss_pred HH
Confidence 44
No 71
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=3.4e-26 Score=223.57 Aligned_cols=292 Identities=17% Similarity=0.171 Sum_probs=177.4
Q ss_pred CCCChh----HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHH----------HHHh--------cCCceEEEEcChhhH
Q 015196 24 AQPRPY----QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS----------AACR--------IKKSCLCLATNAVSV 81 (411)
Q Consensus 24 ~~l~~~----Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~----------~~~~--------~~~~~lil~P~~~l~ 81 (411)
..|++. |++++..+..+. .+++.|+||+|||...-. .+.. ...++++++|+++|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gk---dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRK---PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALV 235 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCC---CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHH
Confidence 345554 566666666654 899999999999986211 1111 124799999999999
Q ss_pred HHHHHHHHHHhCCC---CCcEEEEcCchhhh----hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecC
Q 015196 82 DQWAFQFKLWSTIQ---DDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (411)
Q Consensus 82 ~q~~~~~~~~~~~~---~~~v~~~~~~~~~~----~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~ 154 (411)
.|+..++.+..+.. ...+.+..++..+. .....+++++|+..... . -.++++||+||+
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~-------------~--L~~v~~VVIDEa 300 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN-------------K--LFDYGTVIIDEV 300 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc-------------c--cccCCEEEcccc
Confidence 99999998766542 22344444443321 12346899998653111 1 256789999999
Q ss_pred CCCCchh--HHHHHHhh--ccccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHH
Q 015196 155 HVVPAHM--FRKVISLT--KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229 (411)
Q Consensus 155 H~~~~~~--~~~~~~~~--~~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (411)
|+..... ...++... ..++++.||||+...-.. +..+++ +..... ...-..++....+........
T Consensus 301 HEr~~~~DllL~llk~~~~~~rq~ILmSATl~~dv~~---l~~~~~~p~~I~I------~grt~~pV~~~yi~~~~~~~~ 371 (675)
T PHA02653 301 HEHDQIGDIIIAVARKHIDKIRSLFLMTATLEDDRDR---IKEFFPNPAFVHI------PGGTLFPISEVYVKNKYNPKN 371 (675)
T ss_pred ccCccchhHHHHHHHHhhhhcCEEEEEccCCcHhHHH---HHHHhcCCcEEEe------CCCcCCCeEEEEeecCccccc
Confidence 9987542 22222221 123789999999632221 223333 221111 111112332222211111111
Q ss_pred HHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------CceeeCCCCHHHH
Q 015196 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVER 302 (411)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------~~~i~g~~~~~~r 302 (411)
...|.. ..+...+..+..... ..+..+|||++++++++.+.+.|. +..+||++++.
T Consensus 372 ~~~y~~--------------~~k~~~l~~L~~~~~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~-- 434 (675)
T PHA02653 372 KRAYIE--------------EEKKNIVTALKKYTP-PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI-- 434 (675)
T ss_pred chhhhH--------------HHHHHHHHHHHHhhc-ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--
Confidence 111110 001122333332211 235689999999999999988873 34589999864
Q ss_pred HHHHHHh-cCCCCeeEEEeeccCccccCccCccEEEEec---CC--------CCCHHHHHHHhhcccccC
Q 015196 303 TKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQIS---SH--------AGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 303 ~~~~~~f-~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~---~~--------~~s~~~~~Q~~GR~~R~~ 360 (411)
++.+++| +++ +.+|||||+.+++|+|+|++++||... .| +-|...+.||.||+||..
T Consensus 435 eq~l~~ff~~g-k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~ 503 (675)
T PHA02653 435 DEILEKVYSSK-NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS 503 (675)
T ss_pred HHHHHHHhccC-ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC
Confidence 4566777 676 999999999999999999999999863 12 117889999999999996
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=228.55 Aligned_cols=333 Identities=16% Similarity=0.141 Sum_probs=232.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCC--
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-- 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~-- 96 (411)
..|+.||.+|++.+..+. +++|..|||||||.+++.+|.+. ..++|+|.|+++|++...++|.++....+
T Consensus 69 ~~lY~HQ~~A~~~~~~G~---~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 69 ERLYSHQVDALRLIREGR---NVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred ccccHHHHHHHHHHHCCC---CEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 349999999999998875 99999999999999988886432 34789999999999999999999875444
Q ss_pred CcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-------hHHH
Q 015196 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRK 164 (411)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-------~~~~ 164 (411)
..+..++|+... ...+..+|+++||+|++...-+...... ++ .....+||+||+|-+.+- ..++
T Consensus 146 v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~---~~-~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 146 VTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWL---WL-LRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred ceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHH---HH-HhcCcEEEEecceeccccchhHHHHHHHH
Confidence 566778875442 2357799999999999985444322221 11 133789999999999854 3444
Q ss_pred HHHhhc----cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 165 VISLTK----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 165 ~~~~~~----~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
+...+. ..++|+.|||..........+....... . .-++|.-..........+........
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~----~---v~~~g~~~~~~~~~~~~p~~~~~~~~-------- 286 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV----P---VDEDGSPRGLRYFVRREPPIRELAES-------- 286 (851)
T ss_pred HHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee----e---ccCCCCCCCceEEEEeCCcchhhhhh--------
Confidence 554443 4588999999987665543332211111 0 22233434444333333311111110
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHH----h---C------CceeeCCCCHHHHHHHHH
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK----L---R------KPMIYGATSHVERTKILQ 307 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~----l---~------~~~i~g~~~~~~r~~~~~ 307 (411)
....+......+..... ..+-++|+|+.+...++.+... + + +..+++++...+|..+..
T Consensus 287 -------~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 287 -------IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred -------cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHH
Confidence 11122234444454333 3578999999999998888522 1 2 456789999999999999
Q ss_pred HhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCch
Q 015196 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (411)
Q Consensus 308 ~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~ 387 (411)
.|+.| ++.++++|+++.-|+|+-.++.+|....|..+..+++|+.||+||.++ ....+.....+..
T Consensus 359 ~~~~g-~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~-------------~~l~~~v~~~~~~ 424 (851)
T COG1205 359 EFKEG-ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ-------------ESLVLVVLRSDPL 424 (851)
T ss_pred HHhcC-CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC-------------CceEEEEeCCCcc
Confidence 99998 999999999999999999999999875553388999999999999994 2444444456777
Q ss_pred hHHHHHHHHHHHh
Q 015196 388 EMFYSTKRQQFLI 400 (411)
Q Consensus 388 ~~~~~~~r~~~~~ 400 (411)
+.+|.+.....+.
T Consensus 425 d~yy~~~p~~~~~ 437 (851)
T COG1205 425 DSYYLRHPEELLE 437 (851)
T ss_pred chhhhhCcHhhhh
Confidence 7777766655554
No 73
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=3.9e-27 Score=217.19 Aligned_cols=297 Identities=17% Similarity=0.180 Sum_probs=210.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-----CCceEEEEcChhhHHHHHHHHHHHhC-CCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~-~~~~ 97 (411)
.+.+.|..||..++..- +.++.+-.|+|||++...++ ..+ .-..+|++|+++++-|..+.+..... ....
T Consensus 47 ~ptkiQaaAIP~~~~km---DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKM---DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCCchhhhhhhhhhccc---ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 57899999999988764 88999999999999854443 222 34799999999999999999987642 2344
Q ss_pred cEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-hhHHH----HHHh
Q 015196 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VISL 168 (411)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~~~~~----~~~~ 168 (411)
.+.++-|+..- .-.++++|+|+|+..+.... -++.++.....|+|+|||+.+.. ..++. +++.
T Consensus 124 ~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~--------el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLV--------ELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred ceEEEecCchhhhhhhhhhhceEEecCchHHHHHH--------HhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 67776664321 12356889999998765432 11333445778999999999987 44444 4444
Q ss_pred hcc-ccEEEEeeecccCchhhhhhhhhh-cccchhhchHHHHhcCCcccceeEEEEcC--CCHHHHHHHHhhhchhhhhh
Q 015196 169 TKS-HCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCP--MTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 169 ~~~-~~~i~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 244 (411)
++. ++++++|||-.++-+. .+..++ +|.+...+..+.. .+.-.+|+...+. ...+..+.
T Consensus 196 lP~~rQv~a~SATYp~nLdn--~Lsk~mrdp~lVr~n~~d~~---L~GikQyv~~~~s~nnsveemrl------------ 258 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRNLDN--LLSKFMRDPALVRFNADDVQ---LFGIKQYVVAKCSPNNSVEEMRL------------ 258 (980)
T ss_pred cchhheeeEEeccCchhHHH--HHHHHhcccceeecccCCce---eechhheeeeccCCcchHHHHHH------------
Confidence 433 4889999998765443 222222 2333222222111 1111112122211 11122222
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
|.+.+..+.+... ..++||||+.+..|+.++..| .+.+|.|.|++.+|...++.++.- .++|||
T Consensus 259 -------klq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILV 327 (980)
T KOG4284|consen 259 -------KLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILV 327 (980)
T ss_pred -------HHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEE
Confidence 2355666665554 678999999999999999999 467899999999999999999997 999999
Q ss_pred eeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+..++|+|-++++.||..+.| .+..+|.+||||+||.|.
T Consensus 328 sTDLtaRGIDa~~vNLVVNiD~p-~d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 328 STDLTARGIDADNVNLVVNIDAP-ADEETYFHRIGRAGRFGA 368 (980)
T ss_pred ecchhhccCCccccceEEecCCC-cchHHHHHHhhhcccccc
Confidence 99999999999999999998666 599999999999999995
No 74
>COG4889 Predicted helicase [General function prediction only]
Probab=99.95 E-value=5e-27 Score=222.77 Aligned_cols=336 Identities=18% Similarity=0.231 Sum_probs=218.1
Q ss_pred CcccCCCCCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC-CceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 17 NMELKPHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK-KSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 17 ~~~~~~~~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~-~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.+.++...+|||||++|+++.+.+. ...++-+.|.+|+|||++++.+...+. .++|+++|+++|..|..++...-...
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l 232 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKEL 232 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCc
Confidence 3456778899999999999987652 346888999999999999999987664 69999999999999987776543222
Q ss_pred CCCcEEEEcCchh---------------------h--------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCC
Q 015196 95 QDDQICRFTSDSK---------------------E--------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145 (411)
Q Consensus 95 ~~~~v~~~~~~~~---------------------~--------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~ 145 (411)
+-....+.+...- . .-..+--|+++|||++.... -.+......
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~--------eAQe~G~~~ 304 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK--------EAQEAGLDE 304 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH--------HHHHcCCCC
Confidence 2111111111000 0 00123578999999886542 123333468
Q ss_pred ccEEEEecCCCCCch--------hHHHH--HHhhccccEEEEeeecccCchhh-------------hhhhhhhcccchhh
Q 015196 146 WGLLLMDEVHVVPAH--------MFRKV--ISLTKSHCKLGLTATLVREDERI-------------TDLNFLIGPKLYEA 202 (411)
Q Consensus 146 ~~lvIiDE~H~~~~~--------~~~~~--~~~~~~~~~i~lSATp~~~~~~~-------------~~~~~~~~~~~~~~ 202 (411)
+|+||+||||+-.+. .|.++ -..+++.+++.|||||.-..... .+-...+|+..+..
T Consensus 305 fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl 384 (1518)
T COG4889 305 FDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRL 384 (1518)
T ss_pred ccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcc
Confidence 899999999997643 12211 12345667899999997443321 12235788999999
Q ss_pred chHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcH-HHHHHHHHHhh-----------hcCCCe
Q 015196 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF-RACEFLIRFHE-----------QQRGDK 270 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~~l~~~~~-----------~~~~~~ 270 (411)
...+.++.+.+.++.+..+.++. +.....+..........+......|+ -+..-|.+... ..+.++
T Consensus 385 ~FgeAv~rdlLTDYKVmvlaVd~--~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~R 462 (1518)
T COG4889 385 GFGEAVERDLLTDYKVMVLAVDK--EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQR 462 (1518)
T ss_pred cHHHHHHhhhhccceEEEEEech--hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHH
Confidence 99999999999999887776542 21111111110000000110011111 11111111100 011235
Q ss_pred EEEEecChhHHHHHHHHhC--------------------CceeeCCCCHHHHHHHHHH---hcCCCCeeEEEeeccCccc
Q 015196 271 IIVFADNLFALTEYAMKLR--------------------KPMIYGATSHVERTKILQA---FKCSRDLNTIFLSKVGDNS 327 (411)
Q Consensus 271 ~ivf~~~~~~~~~l~~~l~--------------------~~~i~g~~~~~~r~~~~~~---f~~~~~~~vlv~t~~~~~G 327 (411)
+|-||.++++-+.+++.+. +..+.|.+..-+|...+.. |.. ...+||--...|+||
T Consensus 463 AIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~-neckIlSNaRcLSEG 541 (1518)
T COG4889 463 AIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEP-NECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCc-chheeeccchhhhcC
Confidence 6778888887666666551 3456789998888655443 344 378899889999999
Q ss_pred cCccCccEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 015196 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (411)
Q Consensus 328 id~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~ 364 (411)
+|+|.++-||+++ |..|.-+.+|.+||++|..++|+
T Consensus 542 VDVPaLDsViFf~-pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIFFD-PRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEEec-CchhHHHHHHHHHHHHHhCcCCc
Confidence 9999999999984 44688899999999999999877
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=8.5e-26 Score=216.43 Aligned_cols=303 Identities=16% Similarity=0.093 Sum_probs=179.4
Q ss_pred EEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhh---------hcCCC
Q 015196 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNA 114 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~~~ 114 (411)
+|.+|||+|||.+++.++. ..++++|+++|+.+|+.|+.+.|.+.++. .+.++++..... ..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~---~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGS---QVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---cEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4789999999999877653 34678999999999999999999987653 466776643221 12467
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hH-----HHHHHhhccccEEEEeeecccC
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-----RKVISLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~-----~~~~~~~~~~~~i~lSATp~~~ 184 (411)
+|+|+|+..+.. ...++++||+||+|..... .| ...........++++||||...
T Consensus 78 ~IVVGTrsalf~---------------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 78 LVVIGTRSALFL---------------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred CEEECChHHHcC---------------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 899999975532 1256799999999998732 22 2233334556899999999732
Q ss_pred chhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhh
Q 015196 185 DERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264 (411)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~ 264 (411)
.-.. ..-+. .......+......+..+.+..+. .+..... .. ...++.+.+..
T Consensus 143 s~~~----~~~g~-~~~~~l~~r~~~~~~p~v~vid~~----~~~~~~~--------------ls---~~l~~~i~~~l- 195 (505)
T TIGR00595 143 SYHN----AKQKA-YRLLVLTRRVSGRKPPEVKLIDMR----KEPRQSF--------------LS---PELITAIEQTL- 195 (505)
T ss_pred HHHH----HhcCC-eEEeechhhhcCCCCCeEEEEecc----cccccCC--------------cc---HHHHHHHHHHH-
Confidence 2110 00010 000111111111111222221111 1000000 00 01222222222
Q ss_pred hcCCCeEEEEecCh---------------------------------------------------------------hH-
Q 015196 265 QQRGDKIIVFADNL---------------------------------------------------------------FA- 280 (411)
Q Consensus 265 ~~~~~~~ivf~~~~---------------------------------------------------------------~~- 280 (411)
..++++|||+|.+ +.
T Consensus 196 -~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~ 274 (505)
T TIGR00595 196 -AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV 274 (505)
T ss_pred -HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH
Confidence 2345566664321 11
Q ss_pred HHHHHHHh---CCceeeCCCCHHHH--HHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCC-------C----C
Q 015196 281 LTEYAMKL---RKPMIYGATSHVER--TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH-------A----G 344 (411)
Q Consensus 281 ~~~l~~~l---~~~~i~g~~~~~~r--~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~-------~----~ 344 (411)
.+.+.+.| ++..+|++++...+ +.+++.|.+| +++|||+|++++.|+|+|+++.|++++.. + .
T Consensus 275 ~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 275 EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 23333333 34567888765544 8899999998 99999999999999999999988765221 0 1
Q ss_pred CHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc--------hhHHHHHHHHHHHhhcCCcee
Q 015196 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT--------QEMFYSTKRQQFLIDQGYSFK 407 (411)
Q Consensus 345 s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~r~~~~~~~g~~~~ 407 (411)
..+.+.|+.||+||.+. ...+.+........ .-+.++++..+.-+..||++-
T Consensus 354 ~~~ll~q~~GRagR~~~-----------~g~viiqt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf 413 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAED-----------PGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPF 413 (505)
T ss_pred HHHHHHHHHhccCCCCC-----------CCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCCCch
Confidence 13678999999999774 22344444333221 114566777777778888763
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=2.6e-25 Score=220.68 Aligned_cols=330 Identities=16% Similarity=0.139 Sum_probs=193.2
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
....|+++|+++++.+..+......++.++||+|||.+++.++. ..++++|+++|+++|+.|+.+.|.+.++. .
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~---~ 217 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGA---P 217 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---C
Confidence 34689999999999998741224789999999999999877653 33679999999999999999999987653 5
Q ss_pred EEEEcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hH--
Q 015196 99 ICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-- 162 (411)
Q Consensus 99 v~~~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~-- 162 (411)
+..++++... ...+..+|+|+|+..+.. .-.++++||+||+|..... .|
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~---------------p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL---------------PFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc---------------cccCCCEEEEECCCccccccCcCCCCcH
Confidence 6677664321 112457999999975531 1256789999999987632 11
Q ss_pred HHH---HHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhch
Q 015196 163 RKV---ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (411)
Q Consensus 163 ~~~---~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (411)
+.+ ........++++||||........ ..|. ........-.....+..+.. + ++..+... ..
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~~----~~g~-~~~~~l~~r~~~~~~p~v~~--i--d~~~~~~~-----~~- 347 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLANA----QQGR-YRLLRLTKRAGGARLPEVEI--I--DMRELLRG-----EN- 347 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHHH----hccc-eeEEEeccccccCCCCeEEE--E--echhhhhh-----cc-
Confidence 111 122344578999999973221100 0000 00000000000001111111 1 11110000 00
Q ss_pred hhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecC------------------------------------------
Q 015196 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADN------------------------------------------ 277 (411)
Q Consensus 240 ~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~------------------------------------------ 277 (411)
.. ... ...+..+.+.. ..++++|+|++.
T Consensus 348 --~~---~ls---~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 348 --GS---FLS---PPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred --cC---CCC---HHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 00 000 01111111111 123334444332
Q ss_pred ---------------------h-hHHHHHHHHh---CCceeeCCCC--HHHHHHHHHHhcCCCCeeEEEeeccCccccCc
Q 015196 278 ---------------------L-FALTEYAMKL---RKPMIYGATS--HVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 278 ---------------------~-~~~~~l~~~l---~~~~i~g~~~--~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~ 330 (411)
. ...+.+.+.+ ++..+|+++. ..+++.+++.|.+| +++|||+|++++.|+|+
T Consensus 418 ~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 418 EPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEEEChhhccCCCC
Confidence 1 1123333333 3456788765 45789999999998 99999999999999999
Q ss_pred cCccEEEEecCCC--C---------CHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc--------hhHHH
Q 015196 331 PEANVIIQISSHA--G---------SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT--------QEMFY 391 (411)
Q Consensus 331 ~~~~~vi~~~~~~--~---------s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~--------~~~~~ 391 (411)
|+++.|++++... . ..+.+.|++||+||.+. ...+++.+.-.... .-+.+
T Consensus 497 p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~-----------~g~viiqT~~p~~~~~~~~~~~d~~~f 565 (679)
T PRK05580 497 PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK-----------PGEVLIQTYHPEHPVIQALLAQDYDAF 565 (679)
T ss_pred CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC-----------CCEEEEEeCCCCCHHHHHHHhCCHHHH
Confidence 9999887663220 0 13568999999999763 22344444322211 12456
Q ss_pred HHHHHHHHhhcCCce
Q 015196 392 STKRQQFLIDQGYSF 406 (411)
Q Consensus 392 ~~~r~~~~~~~g~~~ 406 (411)
.+...+.-+..||++
T Consensus 566 ~~~El~~R~~~~~PP 580 (679)
T PRK05580 566 AEQELEERRAAGYPP 580 (679)
T ss_pred HHHHHHHHHhcCCCC
Confidence 677777777887765
No 77
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=6.5e-25 Score=219.59 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=177.9
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCC-CcEEEEcCchh
Q 015196 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQICRFTSDSK 107 (411)
Q Consensus 32 ~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~v~~~~~~~~ 107 (411)
+.+..+..+ ..+++.|+||||||.....++.+ .+.+++|+.|++.++.|....+.+.++... ..++.......
T Consensus 9 ~i~~~l~~~---~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 9 ALRDALAAH---PQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHHcC---CcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 344444443 38999999999999997776543 246899999999999999998876555322 23443222211
Q ss_pred hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCC-CCchh----H-HHHHHhh-ccccEEEEeee
Q 015196 108 ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM----F-RKVISLT-KSHCKLGLTAT 180 (411)
Q Consensus 108 ~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~-~~~~~----~-~~~~~~~-~~~~~i~lSAT 180 (411)
......+|.|+|...|..... ....-.++++||+||+|+ ..+.. + ..+...+ ...+++.||||
T Consensus 86 -~~s~~t~I~v~T~G~Llr~l~---------~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGILTRMIQ---------DDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred -ccCCCCcEEEECCcHHHHHHh---------hCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 223457899999987753221 111235788999999996 33321 1 2222222 33488999999
Q ss_pred cccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHH-HHHHHHhhhchhhhhhhhhcCCCcHHHHHH
Q 015196 181 LVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALYVMNPNKFRACEF 258 (411)
Q Consensus 181 p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (411)
+.... +..+++. .... ..|-..++..... +.... .....+ ...+..
T Consensus 156 l~~~~-----l~~~l~~~~vI~-------~~gr~~pVe~~y~--~~~~~~~~~~~v------------------~~~l~~ 203 (819)
T TIGR01970 156 LDGER-----LSSLLPDAPVVE-------SEGRSFPVEIRYL--PLRGDQRLEDAV------------------SRAVEH 203 (819)
T ss_pred CCHHH-----HHHHcCCCcEEE-------ecCcceeeeeEEe--ecchhhhHHHHH------------------HHHHHH
Confidence 86321 2223321 1110 1111122221111 11110 000000 012222
Q ss_pred HHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCc
Q 015196 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 259 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~ 330 (411)
+++ .....+|||+++..+++.+.+.|. +..+||.++..+|..+++.|.+| ..+|||||+++++|+|+
T Consensus 204 ~l~----~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlVATnIAErgItI 278 (819)
T TIGR01970 204 ALA----SETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVLATNIAETSLTI 278 (819)
T ss_pred HHH----hcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEEecchHhhcccc
Confidence 222 224679999999999888887773 34579999999999999999998 99999999999999999
Q ss_pred cCccEEEEecCCC-----------------CCHHHHHHHhhcccccCC
Q 015196 331 PEANVIIQISSHA-----------------GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 331 ~~~~~vi~~~~~~-----------------~s~~~~~Q~~GR~~R~~~ 361 (411)
|++++||.+..+- -|..++.||.||+||.++
T Consensus 279 p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~ 326 (819)
T TIGR01970 279 EGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP 326 (819)
T ss_pred cCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC
Confidence 9999999863220 134568999999999973
No 78
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=8.7e-25 Score=219.19 Aligned_cols=282 Identities=18% Similarity=0.180 Sum_probs=179.1
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCC-CCcEEEEcCch
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQICRFTSDS 106 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~v~~~~~~~ 106 (411)
.+.++.+..+. .+++.|+||||||......+... ..+++|++|++.++.|....+.+.++.. ...++...+..
T Consensus 11 ~~i~~~l~~~~---~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 11 PELLTALKTAP---QVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 34444544443 89999999999999987666432 3589999999999999999887665432 23444433322
Q ss_pred hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC-c-hh----HHHHHHhh-ccccEEEEee
Q 015196 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-A-HM----FRKVISLT-KSHCKLGLTA 179 (411)
Q Consensus 107 ~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~-~-~~----~~~~~~~~-~~~~~i~lSA 179 (411)
. ......+|+|+|+..+..... ....-.++++||+||+|+.. . .. ...+...+ ...+++.|||
T Consensus 88 ~-~~~~~t~I~v~T~G~Llr~l~---------~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 88 S-KVGPNTRLEVVTEGILTRMIQ---------RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred c-ccCCCCcEEEEChhHHHHHHh---------hCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 1 123346899999987753221 11123578899999999843 2 21 11222222 2347899999
Q ss_pred ecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHH-HHHHHhhhchhhhhhhhhcCCCcHHHHHH
Q 015196 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF-FSEYLKKENSKKKQALYVMNPNKFRACEF 258 (411)
Q Consensus 180 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (411)
|+... .+..+++.... +...|-..++... +.+..... ....+ ...+..
T Consensus 158 Tl~~~-----~l~~~~~~~~~------I~~~gr~~pV~~~--y~~~~~~~~~~~~v------------------~~~l~~ 206 (812)
T PRK11664 158 TLDND-----RLQQLLPDAPV------IVSEGRSFPVERR--YQPLPAHQRFDEAV------------------ARATAE 206 (812)
T ss_pred CCCHH-----HHHHhcCCCCE------EEecCccccceEE--eccCchhhhHHHHH------------------HHHHHH
Confidence 99632 12233321100 0011222222211 11111100 00000 012222
Q ss_pred HHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCc
Q 015196 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 259 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~ 330 (411)
++ . .....+|||+++..+++.+.+.|. +..+||.++..+|..+++.|.+| ..+|||||+++++|+|+
T Consensus 207 ~l---~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlvATnIAErsLtI 281 (812)
T PRK11664 207 LL---R-QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVLATNIAETSLTI 281 (812)
T ss_pred HH---H-hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEEecchHHhcccc
Confidence 22 2 235689999999999999888883 33589999999999999999998 99999999999999999
Q ss_pred cCccEEEEecCC--------C---------CCHHHHHHHhhcccccCC
Q 015196 331 PEANVIIQISSH--------A---------GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 331 ~~~~~vi~~~~~--------~---------~s~~~~~Q~~GR~~R~~~ 361 (411)
|++++||....+ . -|..++.||.||+||.++
T Consensus 282 p~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~ 329 (812)
T PRK11664 282 EGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP 329 (812)
T ss_pred cCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC
Confidence 999999985211 0 134679999999999973
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.7e-25 Score=228.02 Aligned_cols=282 Identities=18% Similarity=0.209 Sum_probs=183.8
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|+++|+.++..++.+. ++++.||||+|||..++.++.. -+.+++|++|+++|+.|+.+.+..+.......+
T Consensus 78 G~~pt~iQ~~~i~~il~g~---dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGE---SFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCC---cEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 3589999999999998875 9999999999999765544332 257899999999999999999999865444444
Q ss_pred EEEcCch------hh----hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc---------
Q 015196 100 CRFTSDS------KE----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (411)
Q Consensus 100 ~~~~~~~------~~----~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--------- 159 (411)
..+.+.. .. .+ .+..+|+|+|++.+.. ....+...+++++|+||||++..
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~----------~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK----------NFDELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH----------HHHhccccccCEEEEEChHHhhhcccchhhHH
Confidence 4443221 11 11 2458999999987743 22345456799999999999874
Q ss_pred -------hhHHHHHHhhc-------------------------cccEEEEeeecccCchhhhhhhhhhcccchhhchHHH
Q 015196 160 -------HMFRKVISLTK-------------------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDL 207 (411)
Q Consensus 160 -------~~~~~~~~~~~-------------------------~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (411)
+....++..++ ..+++.+|||.............+.+ +.....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~---~~v~~~-- 299 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG---FEVGSP-- 299 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce---EEecCc--
Confidence 11222222222 35689999998643221111111111 000000
Q ss_pred HhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhH---HHHH
Q 015196 208 VKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LTEY 284 (411)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~---~~~l 284 (411)
...+.+..-..+. ...+...+..+++.. +.++||||++.+. ++.+
T Consensus 300 --~~~~rnI~~~yi~--------------------------~~~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 300 --VFYLRNIVDSYIV--------------------------DEDSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred --ccccCCceEEEEE--------------------------cccHHHHHHHHHHhc----CCCEEEEEecccChHHHHHH
Confidence 0011111100000 002333444455433 3579999998776 9999
Q ss_pred HHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe----eccCccccCccC-ccEEEEecCCC-----CCHHHH
Q 015196 285 AMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA-----GSRRQE 349 (411)
Q Consensus 285 ~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~----t~~~~~Gid~~~-~~~vi~~~~~~-----~s~~~~ 349 (411)
++.| .+..+||++ ...+++|++| +++|||+ |+.+++|+|+|+ ++.||++.-|. +....+
T Consensus 348 ~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~ 421 (1176)
T PRK09401 348 AEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAP 421 (1176)
T ss_pred HHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccC
Confidence 9888 346789998 2235999998 9999999 589999999999 89999985541 135567
Q ss_pred HHHhhcccccC
Q 015196 350 AQRLGRILRAK 360 (411)
Q Consensus 350 ~Q~~GR~~R~~ 360 (411)
.+++||..+..
T Consensus 422 ~~~~~r~~~~~ 432 (1176)
T PRK09401 422 PFLLLRLLSLL 432 (1176)
T ss_pred HHHHHHHHhhc
Confidence 89999997555
No 80
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=201.75 Aligned_cols=304 Identities=16% Similarity=0.205 Sum_probs=205.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH----Hh----c------CCceEEEEcChhhHHHHHHHH
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CR----I------KKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~----~~----~------~~~~lil~P~~~l~~q~~~~~ 88 (411)
-..|+|.|.+.+.-++.+. +.+=.|-||||||++...++ .+ + +.--||+||+++|+.|..+-+
T Consensus 190 I~~PTpIQvQGlPvvLsGR---DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 190 IVHPTPIQVQGLPVVLSGR---DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred CCCCCceeecCcceEeecC---ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 3578999999998888764 77778999999998744332 11 1 235899999999999988877
Q ss_pred HHHh------CCCCCcEEEEcC-----chhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCC
Q 015196 89 KLWS------TIQDDQICRFTS-----DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (411)
Q Consensus 89 ~~~~------~~~~~~v~~~~~-----~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~ 157 (411)
..|. |.+..+....-| ...+...+..+|+|+|+..|...+.. ..++-.-+.++.+||++++
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--------K~~sLd~CRyL~lDEADRm 338 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--------KIMSLDACRYLTLDEADRM 338 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--------hhccHHHHHHhhhhhHHHH
Confidence 6654 333333222222 22233456789999999977543211 0111123347899999999
Q ss_pred Cch----hHHHHHHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc---CCCHHH
Q 015196 158 PAH----MFRKVISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---PMTKEF 229 (411)
Q Consensus 158 ~~~----~~~~~~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 229 (411)
.+- ..+.++..++. ++.+++|||..+.-.. +. ....+.|+.+..-.. .++--.
T Consensus 339 iDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~------FA-------------kSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 339 IDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN------FA-------------KSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred hhccchhhHHHHHHHHhhhhheeeeeccccHHHHH------HH-------------HhhcccceEEecccccccchhHHH
Confidence 864 44555555544 5789999998642221 10 111223332211110 111111
Q ss_pred HHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHH
Q 015196 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTK 304 (411)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~ 304 (411)
--+|+.. . ..+-.+++... ....+++|||+....++.+.++| .+..+||+-.+++|..
T Consensus 400 evEyVkq-------------E---aKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ 462 (610)
T KOG0341|consen 400 EVEYVKQ-------------E---AKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHY 462 (610)
T ss_pred HHHHHHh-------------h---hhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHH
Confidence 1223311 1 22344455444 55778999999999999999998 3567999999999999
Q ss_pred HHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecC
Q 015196 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (411)
Q Consensus 305 ~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~ 384 (411)
.++.|+.| +.+|||+|+.++.|+|+|++.+||.++.| ....+|++||||.||.|. ....-+++..
T Consensus 463 ai~afr~g-kKDVLVATDVASKGLDFp~iqHVINyDMP-~eIENYVHRIGRTGRsg~-------------~GiATTfINK 527 (610)
T KOG0341|consen 463 AIEAFRAG-KKDVLVATDVASKGLDFPDIQHVINYDMP-EEIENYVHRIGRTGRSGK-------------TGIATTFINK 527 (610)
T ss_pred HHHHHhcC-CCceEEEecchhccCCCccchhhccCCCh-HHHHHHHHHhcccCCCCC-------------cceeeeeecc
Confidence 99999998 99999999999999999999999999766 589999999999999996 2444556665
Q ss_pred Cchh
Q 015196 385 DTQE 388 (411)
Q Consensus 385 ~~~~ 388 (411)
.+.+
T Consensus 528 ~~~e 531 (610)
T KOG0341|consen 528 NQEE 531 (610)
T ss_pred cchH
Confidence 5554
No 81
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=204.68 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=198.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc----------CCceEEEEcChhhHHHHHHHHHHHh-
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~----------~~~~lil~P~~~l~~q~~~~~~~~~- 92 (411)
.+.|.|.+|+.-++... .++.++|||+|||+....++ .++ +-+++|+.|+++|+.|.+.++.++.
T Consensus 158 ~Pt~iq~~aipvfl~~r---~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKR---DVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCcccchhhhhhhccc---ceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 58999999999988765 89999999999999977764 222 2379999999999999999999875
Q ss_pred -CCCCCcEEEEcCc----hhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHH
Q 015196 93 -TIQDDQICRFTSD----SKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK 164 (411)
Q Consensus 93 -~~~~~~v~~~~~~----~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~ 164 (411)
......+..++.. .+. .....+++++.||-.+........- .+.-...-.+|+||++.+..+ .+..
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~------~idl~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL------NIDLSKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred CCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc------cchhheeeeEeechHHhhhChhhHHH
Confidence 2211122222211 110 1123478999999755433211100 001124457999999999987 3332
Q ss_pred ----HHHhhccc--cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhc
Q 015196 165 ----VISLTKSH--CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (411)
Q Consensus 165 ----~~~~~~~~--~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (411)
++..+.+. ++=++|||....-.. |..++..+. . .+.+...+......
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~~~~VEE----------------~~~~i~~~~-~-----~vivg~~~sa~~~V----- 361 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATISVYVEE----------------WAELIKSDL-K-----RVIVGLRNSANETV----- 361 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccccHHHHH----------------HHHHhhccc-e-----eEEEecchhHhhhh-----
Confidence 33333332 445567776532221 222221111 0 01111111110111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC------CceeeCCCCHHHHHHHHHHhcCC
Q 015196 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCS 312 (411)
Q Consensus 239 ~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~------~~~i~g~~~~~~r~~~~~~f~~~ 312 (411)
..+...+.....|+-++..++...- ..+.+||+.+.+.+..+...|. +.++||..+..+|++.+++|+.|
T Consensus 362 -~QelvF~gse~~K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 362 -DQELVFCGSEKGKLLALRQLVASGF---KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred -hhhheeeecchhHHHHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc
Confidence 1112223333456677777776543 5689999999999999999994 88999999999999999999998
Q ss_pred CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 313 ~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++.+||||+.+++|+|+.++++||.++-| .+...|++++||.||.|+
T Consensus 438 -~IwvLicTdll~RGiDf~gvn~VInyD~p-~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 438 -KIWVLICTDLLARGIDFKGVNLVINYDFP-QSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred -CeeEEEehhhhhccccccCcceEEecCCC-chhHHHHHHhhccCCCCC
Confidence 99999999999999999999999998666 588899999999999997
No 82
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.94 E-value=3e-24 Score=192.62 Aligned_cols=350 Identities=17% Similarity=0.196 Sum_probs=224.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh--cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~--~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~ 102 (411)
.|.|||++.+...+..+ +++++...+|.|||+.|+.++.. ..-+.||+|| .++...|.+.+.+|++.-.. +.++
T Consensus 198 ~LlPFQreGv~faL~Rg--GR~llADeMGLGKTiQAlaIA~yyraEwplliVcP-AsvrftWa~al~r~lps~~p-i~vv 273 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERG--GRILLADEMGLGKTIQALAIARYYRAEWPLLIVCP-ASVRFTWAKALNRFLPSIHP-IFVV 273 (689)
T ss_pred hhCchhhhhHHHHHhcC--CeEEEecccccchHHHHHHHHHHHhhcCcEEEEec-HHHhHHHHHHHHHhcccccc-eEEE
Confidence 58999999999988765 59999999999999999888754 4468999999 56789999999999864333 4433
Q ss_pred cCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH---HHHhh-ccccEEE
Q 015196 103 TSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VISLT-KSHCKLG 176 (411)
Q Consensus 103 ~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~---~~~~~-~~~~~i~ 176 (411)
.+... ........|.|.+|+++... ...+...++.+||+||+|++.+....+ ....+ .+.++|+
T Consensus 274 ~~~~D~~~~~~t~~~v~ivSye~ls~l----------~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 274 DKSSDPLPDVCTSNTVAIVSYEQLSLL----------HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred ecccCCccccccCCeEEEEEHHHHHHH----------HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEE
Confidence 33221 11223467899999877543 244445679999999999998764333 22222 3458999
Q ss_pred EeeecccCchhh--hhh---------------hhhhccc----chhh----ch-------------HHHHhc--CCcccc
Q 015196 177 LTATLVREDERI--TDL---------------NFLIGPK----LYEA----NW-------------LDLVKG--GFIANV 216 (411)
Q Consensus 177 lSATp~~~~~~~--~~~---------------~~~~~~~----~~~~----~~-------------~~~~~~--~~~~~~ 216 (411)
|||||.-....+ ..+ ..||+.. .+++ +. ..++.+ +-+.|.
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999997433221 000 0111110 0000 00 011100 112222
Q ss_pred eeE-EEEcCCCHH-HHHHHHhhhch-------hhh--hhhhhc---CCCcH-HHHHHHHHH--hhhcCCCeEEEEecChh
Q 015196 217 QCA-EVWCPMTKE-FFSEYLKKENS-------KKK--QALYVM---NPNKF-RACEFLIRF--HEQQRGDKIIVFADNLF 279 (411)
Q Consensus 217 ~~~-~~~~~~~~~-~~~~~~~~~~~-------~~~--~~~~~~---~~~k~-~~~~~l~~~--~~~~~~~~~ivf~~~~~ 279 (411)
+-. .+.+.-..+ .....+..... ..+ ..+... .-.|. ..+++|+.. .....+.|.+|||....
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 211 111121111 11111111000 000 000000 11233 345555541 12256789999999999
Q ss_pred HHHHHHHHh---CCc--eeeCCCCHHHHHHHHHHhcCCCCeeEEEe-eccCccccCccCccEEEEecCCCCCHHHHHHHh
Q 015196 280 ALTEYAMKL---RKP--MIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRL 353 (411)
Q Consensus 280 ~~~~l~~~l---~~~--~i~g~~~~~~r~~~~~~f~~~~~~~vlv~-t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~ 353 (411)
.++.+...+ +++ -|.|.++..+|....+.|...++++|-|- ..+++.|+++...+.|++..-+ +|+.-++|.-
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~-wnPgvLlQAE 582 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH-WNPGVLLQAE 582 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec-CCCceEEech
Confidence 998888888 333 46899999999999999999877775544 6888999999999999987444 5999999999
Q ss_pred hcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHh
Q 015196 354 GRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (411)
Q Consensus 354 GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~ 400 (411)
.|++|.|+ ...+.+|.+++.+|.|++.+..=++-|.
T Consensus 583 DRaHRiGQ-----------kssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 583 DRAHRIGQ-----------KSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hhhhhccc-----------cceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 99999995 4469999999999999998865555444
No 83
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=4.8e-26 Score=213.10 Aligned_cols=331 Identities=15% Similarity=0.105 Sum_probs=224.9
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..|+|-|+|..++..+-++. ++++.|.|.+|||.+|-.+|+. -+.+|++-+|-++|..|-+++|..-++ .
T Consensus 126 YPF~LDpFQ~~aI~Cidr~e---SVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~----D 198 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGE---SVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK----D 198 (1041)
T ss_pred CCcccCchHhhhhhhhcCCc---eEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc----c
Confidence 45899999999999987665 9999999999999998777643 467999999999999999999887554 6
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhc-ccc
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SHC 173 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~-~~~ 173 (411)
||.++|+.. .+..+.++|+|.+.|++.+.|+.+. ......||+||+|.+.+. .|...+-.++ +.+
T Consensus 199 VGLMTGDVT--InP~ASCLVMTTEILRsMLYRGSEv--------mrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 VGLMTGDVT--INPDASCLVMTTEILRSMLYRGSEV--------MREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred cceeeccee--eCCCCceeeeHHHHHHHHHhccchH--------hheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 899999876 4556889999999998877665331 145578999999999976 6666555554 448
Q ss_pred EEEEeeecccCchhhhhhhhhhccc---ch-hhchHHHHhcCCcccc---eeEEEE---cCCCHHHHHHHHhhhchhhhh
Q 015196 174 KLGLTATLVREDERITDLNFLIGPK---LY-EANWLDLVKGGFIANV---QCAEVW---CPMTKEFFSEYLKKENSKKKQ 243 (411)
Q Consensus 174 ~i~lSATp~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 243 (411)
.++||||..+.....+|+-..-... +| ++....+ +.|+.|. -.+.+. ..+..+.+...+..-......
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPL--QHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPL--QHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcc--eeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 8999999988777666665433311 11 1111111 1233321 111111 123334333333211100000
Q ss_pred h-------------hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh----------------------
Q 015196 244 A-------------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------- 288 (411)
Q Consensus 244 ~-------------~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---------------------- 288 (411)
. ...-.+.. .-+..+++..-..+..++|||+=+.+.|+.++-.+
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~-s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGD-SDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred ccccccccccccCCcCCCCCCc-ccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 0 00000111 11222332222245789999999999999887664
Q ss_pred ----------------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe-------
Q 015196 289 ----------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI------- 339 (411)
Q Consensus 289 ----------------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~------- 339 (411)
+++++|++.-+.-++-+.-.|.+| -+++|++|.+.+.|+|+|.-++|+..
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-LvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-LVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-HHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 267899999999999999999998 99999999999999999966666543
Q ss_pred -cCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCC
Q 015196 340 -SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (411)
Q Consensus 340 -~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~ 385 (411)
.+| -|.-+|+|+-||+||.|- +..+.+..++++.
T Consensus 505 ~fRw-issGEYIQMSGRAGRRG~-----------DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRW-ISSGEYIQMSGRAGRRGI-----------DDRGIVILMIDEK 539 (1041)
T ss_pred ceee-ecccceEEecccccccCC-----------CCCceEEEEecCc
Confidence 133 366789999999999995 3446666666643
No 84
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.6e-26 Score=207.32 Aligned_cols=315 Identities=16% Similarity=0.124 Sum_probs=203.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc----------------CCc--eEEEEcChhhHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI----------------KKS--CLCLATNAVSVDQWA 85 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~----------------~~~--~lil~P~~~l~~q~~ 85 (411)
.|.+.|...+...+.+. -+.+=.|.||||||++.-.++ +++ +.+ .||++|+++|+.|..
T Consensus 203 ~Pt~IQsl~lp~ai~gk--~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGK--VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCccchhhcccHhhccc--hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 68889999998888763 367778999999999854443 311 124 999999999999999
Q ss_pred HHHHHHhCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 86 FQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
..|..........+..+.|+.. ..++...+|+|+|+..|-...... ..++..| .+..++|+||++++...
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~---n~~l~~~--k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED---NTHLGNF--KKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh---hhhhhhh--hhceEEEEccHHHHhhh
Confidence 9998876655566777776542 233456899999999775544322 1233333 46679999999999876
Q ss_pred h----HHHHHHhhc------cccEEEEeeecccCchhhhhhh--hhhcccchhhchHHHH-hcCCcccceeEEEEcCCCH
Q 015196 161 M----FRKVISLTK------SHCKLGLTATLVREDERITDLN--FLIGPKLYEANWLDLV-KGGFIANVQCAEVWCPMTK 227 (411)
Q Consensus 161 ~----~~~~~~~~~------~~~~i~lSATp~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 227 (411)
. +..++..+. .++.+.+|||..-......... ......-++..+..++ .-|+..++.+..+. .+.
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t--~q~ 433 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT--PQS 433 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC--cch
Confidence 2 333444432 2378999999863222110000 0000000111122222 22333343332221 111
Q ss_pred HHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---C--ceeeCCCCHHHH
Q 015196 228 EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVER 302 (411)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~---~--~~i~g~~~~~~r 302 (411)
....... ...+.+.-..|--.+-+++. .-.+++|||||+++.+.+++..|+ + ..+|..+.+..|
T Consensus 434 ~ta~~l~-------Es~I~C~~~eKD~ylyYfl~----ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 434 ATASTLT-------ESLIECPPLEKDLYLYYFLT----RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQR 502 (731)
T ss_pred hHHHHHH-------HHhhcCCccccceeEEEEEe----ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 1111111 11111111111111111221 124589999999999999999984 2 357999999999
Q ss_pred HHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 303 ~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
...++.|++. .--|||||+++++|+|+|++.+||.+.-| .+...|++|-||..|.+.
T Consensus 503 LknLEkF~~~-~~~VLiaTDVAARGLDIp~V~HVIHYqVP-rtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 503 LKNLEKFKQS-PSGVLIATDVAARGLDIPGVQHVIHYQVP-RTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHhHHHHhcC-CCeEEEeehhhhccCCCCCcceEEEeecC-CccceeEecccccccccC
Confidence 9999999996 89999999999999999999999998444 688889999999999986
No 85
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=202.04 Aligned_cols=306 Identities=19% Similarity=0.239 Sum_probs=208.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-h------cC----CceEEEEcChhhHHHHHHHHHHHh
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R------IK----KSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~------~~----~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
.+++|.|.+++...+.+. .++=.|.||||||-..+.... + +. .-.+|+||+++|+.|.+.+.++|.
T Consensus 244 ~kptpiq~qalptalsgr---dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGR---DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred ccCCcccccccccccccc---cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 367888888887766653 667789999999988766532 1 21 257899999999999999999985
Q ss_pred CCCCC-cEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH----
Q 015196 93 TIQDD-QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR---- 163 (411)
Q Consensus 93 ~~~~~-~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~---- 163 (411)
..... .+.++.|..+. .+...+.|+|||+..|....+ + ...+..+..++|+||+.++.+-.|.
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk-------m-Katn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK-------M-KATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH-------h-hcccceeeeEEEEechhhhhccccHHHHH
Confidence 54433 45566665442 334568999999997643321 1 1222356789999999999876444
Q ss_pred HHHHhhc-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 164 KVISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 164 ~~~~~~~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
.+...++ .++.|.+|||....-.. +.+.-..-|+++....+....+.. .
T Consensus 393 SI~~hirpdrQtllFsaTf~~kIe~-------------------lard~L~dpVrvVqg~vgean~dI-----------T 442 (731)
T KOG0339|consen 393 SIKQHIRPDRQTLLFSATFKKKIEK-------------------LARDILSDPVRVVQGEVGEANEDI-----------T 442 (731)
T ss_pred HHHhhcCCcceEEEeeccchHHHHH-------------------HHHHHhcCCeeEEEeehhccccch-----------h
Confidence 3444443 35889999998632221 111101122222222111100000 0
Q ss_pred hhhh-hc-CCCcHH-HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCC
Q 015196 243 QALY-VM-NPNKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRD 314 (411)
Q Consensus 243 ~~~~-~~-~~~k~~-~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~ 314 (411)
+... +. ...|+. .+..|....- ..++|+|+--...++++...| ++..+||++.+.+|.+++..|+.+ .
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f~S---~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~ 518 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEFSS---EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-R 518 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhhcc---CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-C
Confidence 0000 01 111221 2233333332 468999999999999999988 467899999999999999999997 9
Q ss_pred eeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchh
Q 015196 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (411)
Q Consensus 315 ~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~ 388 (411)
..|||+|+..++|+|++.+..|+.++. ..+...+.|||||.+|.|. ....|.++.+...+
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~-ardIdththrigrtgRag~-------------kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDF-ARDIDTHTHRIGRTGRAGE-------------KGVAYTLVTEKDAE 578 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccc-cchhHHHHHHhhhcccccc-------------cceeeEEechhhHH
Confidence 999999999999999999999999854 4699999999999999995 47788998776555
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2e-25 Score=213.93 Aligned_cols=320 Identities=16% Similarity=0.085 Sum_probs=214.3
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
....|.|-++|++|+-.+..+. ++++.|+|.+|||++|-.+|+ ....+.++-+|-++|..|-+++|++.++
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~---SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~--- 365 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGD---SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG--- 365 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCC---eEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc---
Confidence 3456889999999999998876 999999999999999766654 3457999999999999999999998775
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhccc
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH 172 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~~~ 172 (411)
.++.++|+.. .+..+.++|+|.+.|++.+.++.+.. .....||+||+|.+.+. .|..++.+++.+
T Consensus 366 -DvgLlTGDvq--inPeAsCLIMTTEILRsMLYrgadli--------RDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 -DVGLLTGDVQ--INPEASCLIMTTEILRSMLYRGADLI--------RDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred -ccceeeccee--eCCCcceEeehHHHHHHHHhcccchh--------hccceEEEeeeeecccccccccceeeeeecccc
Confidence 5678888765 45568999999999998876654422 34679999999999865 788888777665
Q ss_pred -cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc-------C-----CCHHHHHHHHhh---
Q 015196 173 -CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-------P-----MTKEFFSEYLKK--- 236 (411)
Q Consensus 173 -~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~--- 236 (411)
.+|+||||-.+......|+...-+...|-.+.. .--.|...+...- + +.......+...
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~-----kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTS-----KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecC-----CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 789999998876665444432222111100000 0000000000000 0 000000000000
Q ss_pred --------hchhh---------h---hh------hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh--
Q 015196 237 --------ENSKK---------K---QA------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-- 288 (411)
Q Consensus 237 --------~~~~~---------~---~~------~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-- 288 (411)
...+. + .. ....+..+....-.++.+.....--+++|||=++..|++.++.|
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 00000 0 00 00001111123444554443234457999999999999999887
Q ss_pred ------------------------------------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 289 ------------------------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 289 ------------------------------------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
+++++||+.-+.-++-+.-.|..| -++||++|.+++.
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-lVKVLFATETFAM 668 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-LVKVLFATETFAM 668 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-ceEEEeehhhhhh
Confidence 256799999999999999999998 9999999999999
Q ss_pred ccCccCccEEEEecCC-------CCCHHHHHHHhhcccccCCC
Q 015196 327 SIDIPEANVIIQISSH-------AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 327 Gid~~~~~~vi~~~~~-------~~s~~~~~Q~~GR~~R~~~~ 362 (411)
|+|+|.-++|+...+. .-++.+|.|+.|||||.|=+
T Consensus 669 GVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 669 GVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred hcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC
Confidence 9999955555443111 11467899999999999954
No 87
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=2e-24 Score=210.42 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=81.5
Q ss_pred cHHHHHHHH-HHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 252 KFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 252 k~~~~~~l~-~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
|..++...+ +.+ ..+.++||||++++.++.++..|. ...+||.....++..+...++.| .|+|||++++
T Consensus 409 K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~VlIATdmAg 483 (762)
T TIGR03714 409 KLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---AVTVATSMAG 483 (762)
T ss_pred HHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---eEEEEccccc
Confidence 344444433 333 357899999999999999999982 45689999988887777777665 8999999999
Q ss_pred cccCcc---------CccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 326 NSIDIP---------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~---------~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|++ ++++|+.+..| +.....|++||+||.|.
T Consensus 484 RGtDI~l~~~v~~~GGL~vIit~~~p--s~rid~qr~GRtGRqG~ 526 (762)
T TIGR03714 484 RGTDIKLGKGVAELGGLAVIGTERME--NSRVDLQLRGRSGRQGD 526 (762)
T ss_pred cccCCCCCccccccCCeEEEEecCCC--CcHHHHHhhhcccCCCC
Confidence 999999 88999997544 44445999999999996
No 88
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.2e-25 Score=195.43 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=194.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
+++-.|..||.-++.+. +.+..|.||||||.+++.++.+. +...+|++|+++|++|.+..+.+..
T Consensus 41 kpTlIQs~aIplaLEgK---DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGK---DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcchhhhcccchhhcCc---ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 67888999999988876 88899999999999987775321 2479999999999999998776543
Q ss_pred CCC--CCcEEEEcCch-----hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH-
Q 015196 93 TIQ--DDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK- 164 (411)
Q Consensus 93 ~~~--~~~v~~~~~~~-----~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~- 164 (411)
..- ..++..+.++. ...+....+|+|+|+..+......+ .. .......++|+|||+.+.+-.|..
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-----~~--~~~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-----VL--EYLDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-----cc--hhhhheeeEEechhhhhhhcccHHH
Confidence 110 11122222111 1234467899999998775432111 00 112455689999999998765554
Q ss_pred ---HHHhhccc-cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 165 ---VISLTKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 165 ---~~~~~~~~-~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
+...++.. +.++||||....-.....+ .+.+|......-.++...+-+ .-+.+.|.
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL-~l~nPviLkl~e~el~~~dqL---~Qy~v~cs---------------- 250 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLSDDVQALKKL-FLHNPVILKLTEGELPNPDQL---TQYQVKCS---------------- 250 (569)
T ss_pred HHHHHHhCCchhhheeehhhhhhHHHHHHHH-hccCCeEEEeccccCCCcccc---eEEEEEec----------------
Confidence 44444332 6799999997322221111 122233222211111111111 11122222
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---CC--ceeeCCCCHHHHHHHHHHhcCCCCe
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RK--PMIYGATSHVERTKILQAFKCSRDL 315 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---~~--~~i~g~~~~~~r~~~~~~f~~~~~~ 315 (411)
+..|...+-.|++..- -.++.|||+|+++.+.++.-.| ++ .+++|.++..-|..+++.|+.| -+
T Consensus 251 --------e~DKflllyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~Y 319 (569)
T KOG0346|consen 251 --------EEDKFLLLYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LY 319 (569)
T ss_pred --------cchhHHHHHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ce
Confidence 2233333333443221 1468999999999987765444 54 4679999999999999999998 99
Q ss_pred eEEEeec-----------------------------------cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccC
Q 015196 316 NTIFLSK-----------------------------------VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 316 ~vlv~t~-----------------------------------~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
+++|+|+ -.++|+|+..+++|+.++.| .+...|++|+||.+|.+
T Consensus 320 divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P-~t~~sYIHRvGRTaRg~ 398 (569)
T KOG0346|consen 320 DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP-ETVTSYIHRVGRTARGN 398 (569)
T ss_pred eEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCC-CchHHHHHhccccccCC
Confidence 9999998 14689999999999999776 59999999999999988
Q ss_pred C
Q 015196 361 G 361 (411)
Q Consensus 361 ~ 361 (411)
+
T Consensus 399 n 399 (569)
T KOG0346|consen 399 N 399 (569)
T ss_pred C
Confidence 6
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=210.81 Aligned_cols=306 Identities=17% Similarity=0.164 Sum_probs=199.2
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hcC-------------CceEEEEcChhhHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-------------KSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~~-------------~~~lil~P~~~l~~q~~~~ 87 (411)
..-+|.+.|.....+.+... .+.+++||||+|||.+|+..+. +++ .++++++|.++|++.|...
T Consensus 306 g~~sLNrIQS~v~daAl~~~--EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGD--ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCc--CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 33457888888888777665 5999999999999999888763 221 2799999999999999999
Q ss_pred HHHHhCCCCCcEEEEcCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hH
Q 015196 88 FKLWSTIQDDQICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MF 162 (411)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~ 162 (411)
|.+++......|...+++.. ..-.....|+++|++......+...+.... + -+.++|+||.|.+.++ ..
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~-q-----lvrLlIIDEIHLLhDdRGpvL 457 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYE-Q-----LVRLLIIDEIHLLHDDRGPVL 457 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHH-H-----HHHHHhhhhhhhcccccchHH
Confidence 99987766677888888644 222346899999999886655443332211 1 2358999999999543 22
Q ss_pred HH----HHHh----hccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCc-ccceeEEEEcCCCHHHHHHH
Q 015196 163 RK----VISL----TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEY 233 (411)
Q Consensus 163 ~~----~~~~----~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 233 (411)
.. .... -...+.+|||||+.+..+....+.... +.++..+ ..|- .|.....+.+.-.+...+
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd------~syRpvPL~qq~Igi~ek~~~~~-- 528 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFD------SSYRPVPLKQQYIGITEKKPLKR-- 528 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccC------cccCcCCccceEeccccCCchHH--
Confidence 21 1111 123478999999987666433221111 0000000 0000 111111111111100000
Q ss_pred HhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------------------------
Q 015196 234 LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------- 288 (411)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------------------------- 288 (411)
...++. ..-+.+++... ..++|||+.++++.-+.++.+
T Consensus 529 -----------~qamNe---~~yeKVm~~ag---k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr 591 (1674)
T KOG0951|consen 529 -----------FQAMNE---ACYEKVLEHAG---KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR 591 (1674)
T ss_pred -----------HHHHHH---HHHHHHHHhCC---CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence 000110 23445555544 478999999988755555443
Q ss_pred -----------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe---cCC------
Q 015196 289 -----------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---SSH------ 342 (411)
Q Consensus 289 -----------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~---~~~------ 342 (411)
+.+++|.+++..+|....+.|.+| .++|+|+|..+++|+|+|.-.++|-- ..|
T Consensus 592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~ 670 (1674)
T KOG0951|consen 592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWT 670 (1674)
T ss_pred hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC-ceeEEEeehhhhhhcCCCcceEEecCccccCcccCccc
Confidence 245789999999999999999998 99999999999999999966666532 111
Q ss_pred CCCHHHHHHHhhcccccCCC
Q 015196 343 AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 343 ~~s~~~~~Q~~GR~~R~~~~ 362 (411)
..++.+.+||.||+||++.+
T Consensus 671 elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 671 ELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred cCCHHHHHHHHhhcCCCccC
Confidence 12588899999999999964
No 90
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.5e-23 Score=188.86 Aligned_cols=120 Identities=15% Similarity=0.276 Sum_probs=97.6
Q ss_pred CCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEec-
Q 015196 267 RGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS- 340 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~- 340 (411)
.+.+++|-+-+++.++.+.++| ++.++|++...-+|.+++++++.| .++|||..+.|.||+|+|.|..|.+++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEEeehhhhccCCCcceeEEEEeec
Confidence 4789999999999999999999 467999999999999999999998 999999999999999999999887762
Q ss_pred ---CCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHH---HHHHHHHH
Q 015196 341 ---SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY---STKRQQFL 399 (411)
Q Consensus 341 ---~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~---~~~r~~~~ 399 (411)
...+|..+++|.+||+.|.-.+ .+.+|.=.-.+.+...+ .+||...+
T Consensus 524 DKeGFLRse~SLIQtIGRAARN~~G------------kvIlYAD~iT~sM~~Ai~ET~RRR~iQ~ 576 (663)
T COG0556 524 DKEGFLRSERSLIQTIGRAARNVNG------------KVILYADKITDSMQKAIDETERRREIQM 576 (663)
T ss_pred CccccccccchHHHHHHHHhhccCC------------eEEEEchhhhHHHHHHHHHHHHHHHHHH
Confidence 2234788899999999999854 45566544444555333 35554444
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=1e-23 Score=211.13 Aligned_cols=311 Identities=16% Similarity=0.177 Sum_probs=184.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhC--CC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST--IQ 95 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~--~~ 95 (411)
.+.|||+|+.+..... + +.-.+|.+|||+|||.+|+..+..+ ..++++..|+.+.+++++.++.++.. ..
T Consensus 284 ~~~p~p~Q~~~~~~~~-~--pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPL-Q--PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhcc-C--CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999998754322 2 2478899999999999998876543 25899999999999999999876432 11
Q ss_pred CCcEEEEcCchhh-------------------------hhcC-------CCcEEEEecceecccCC-CChhhHHHHHHHh
Q 015196 96 DDQICRFTSDSKE-------------------------RFRG-------NAGVVVTTYNMVAFGGK-RSEESEKIIEEIR 142 (411)
Q Consensus 96 ~~~v~~~~~~~~~-------------------------~~~~-------~~~I~v~t~~~l~~~~~-~~~~~~~~~~~~~ 142 (411)
...+...++.... .+.. .++|+|+|.+++....- .... .+..+
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~---~lR~~- 436 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHR---FIRGF- 436 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchH---HHHHH-
Confidence 2345554442210 0111 16899999987765421 1111 22222
Q ss_pred cCCccEEEEecCCCCCchhH---HHHHHhh--ccccEEEEeeecccCchhhhhhhhhhccc---ch--hhchHHHHhcCC
Q 015196 143 NREWGLLLMDEVHVVPAHMF---RKVISLT--KSHCKLGLTATLVREDERITDLNFLIGPK---LY--EANWLDLVKGGF 212 (411)
Q Consensus 143 ~~~~~lvIiDE~H~~~~~~~---~~~~~~~--~~~~~i~lSATp~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~ 212 (411)
...-.+||+||+|.+..... ..++..+ ....+|.||||+...... .+...++.. .. .++...... .
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~--~L~~a~~~~~~~~~~~~YPlvt~~~--~ 512 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQ--KLLDTYGGHDPVELSSAYPLITWRG--V 512 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHH--HHHHHhccccccccccccccccccc--c
Confidence 12335999999999975422 2233222 124689999999642221 111111110 00 000000000 0
Q ss_pred cccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh-----cC-CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHH
Q 015196 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV-----MN-PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAM 286 (411)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~ 286 (411)
............ .....+..+.. .. ......+..+++... .+.+++||||+++.+..+++
T Consensus 513 ---~~~~~~~~~~~~---------~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~ 578 (878)
T PRK09694 513 ---NGAQRFDLSAHP---------EQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQ 578 (878)
T ss_pred ---ccceeeeccccc---------cccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHH
Confidence 000000000000 00000000000 00 111234555555443 47789999999999999988
Q ss_pred HhC--------CceeeCCCCHHHH----HHHHHHh-cCCC--CeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHH
Q 015196 287 KLR--------KPMIYGATSHVER----TKILQAF-KCSR--DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (411)
Q Consensus 287 ~l~--------~~~i~g~~~~~~r----~~~~~~f-~~~~--~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q 351 (411)
.|. +.++||.++..+| +.+++.| +++. ...|||+|++++.|+|+ +++++|....| ...++|
T Consensus 579 ~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP---idsLiQ 654 (878)
T PRK09694 579 RLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP---VDLLFQ 654 (878)
T ss_pred HHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC---HHHHHH
Confidence 872 4678999998888 4567788 5541 25799999999999999 58988885443 678999
Q ss_pred HhhcccccCCC
Q 015196 352 RLGRILRAKGK 362 (411)
Q Consensus 352 ~~GR~~R~~~~ 362 (411)
|+||++|.+..
T Consensus 655 RaGR~~R~~~~ 665 (878)
T PRK09694 655 RLGRLHRHHRK 665 (878)
T ss_pred HHhccCCCCCC
Confidence 99999999864
No 92
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.7e-24 Score=209.74 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=209.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c----------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~----------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
+++|.|.+|+.++..+. +++-+|-||+|||+..+.++.+ . +.-++|++|+++|+.|..+++..|+.
T Consensus 387 k~~~IQ~qAiP~ImsGr---dvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k 463 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGR---DVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK 463 (997)
T ss_pred CCcchhhhhcchhccCc---ceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 78999999999999875 8999999999999998665432 2 23599999999999999999888876
Q ss_pred CCCCcEEEEcCch-----hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHH
Q 015196 94 IQDDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (411)
Q Consensus 94 ~~~~~v~~~~~~~-----~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~ 164 (411)
.....+....++. ...+.....|+|||+....-..-.... ...+-.+...+|+||++++... +...
T Consensus 464 ~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~g-----rvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 464 LLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSG-----RVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred hcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCC-----ccccccccceeeechhhhhheeccCcccch
Confidence 5444444444422 223445689999999855332100000 0111135568999999999843 3333
Q ss_pred HHHhhcc-ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhh
Q 015196 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (411)
Q Consensus 165 ~~~~~~~-~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (411)
++..++. ++++.+|||..+.-.. + ...+.+ .|+.+ .+....-.. ......
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~---l---a~~vl~-------------~Pvei---iv~~~svV~-------k~V~q~ 589 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEA---L---ARKVLK-------------KPVEI---IVGGRSVVC-------KEVTQV 589 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHH---H---HHHhhc-------------CCeeE---EEccceeEe-------ccceEE
Confidence 6666544 4789999999864111 1 111100 11110 000000000 000000
Q ss_pred -hhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 244 -ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 244 -~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
.+....+.|+..+..|+.... ...++||||.+.+.|..+.+.|. ...+||..+..+|+..++.|+++ .+.+
T Consensus 590 v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~L 666 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNL 666 (997)
T ss_pred EEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceE
Confidence 111113445556666664332 27799999999999999999993 22489999999999999999998 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~ 384 (411)
||+|+.+++|+|++.+.+||.++.| .-..+|++|.||.+|.|.+ ...|.|+.+
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~p-nh~edyvhR~gRTgragrk-------------g~AvtFi~p 719 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFP-NHYEDYVHRVGRTGRAGRK-------------GAAVTFITP 719 (997)
T ss_pred EEehhhhhcccccccceEEEEcccc-hhHHHHHHHhcccccCCcc-------------ceeEEEeCh
Confidence 9999999999999999999998655 5688899999999999962 367778776
No 93
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.6e-23 Score=191.57 Aligned_cols=359 Identities=18% Similarity=0.191 Sum_probs=227.1
Q ss_pred CCCCCChhHHHHHHHHH--hCCCCcceEEEcCCCCCHHHHHHHHHHhc-------------CCceEEEEcChhhHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~--~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~lil~P~~~l~~q~~~ 86 (411)
..+.|.|||..++.-++ ....+..+++....|.|||++++.++.+. ....||||| .+|+.||..
T Consensus 322 ~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~ 400 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEA 400 (901)
T ss_pred ceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHH
Confidence 34689999999998775 33456789999999999999988887532 125999999 679999999
Q ss_pred HHHHHhCCCCCcEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--
Q 015196 87 QFKLWSTIQDDQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-- 160 (411)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-- 160 (411)
++.+...-....|..++|..+. .....++|+|+||..+...............-+..-.|.-||+||||.+.+.
T Consensus 401 Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t 480 (901)
T KOG4439|consen 401 EVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT 480 (901)
T ss_pred HHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch
Confidence 9998877666778888887632 2346799999999988763211100011111111235678999999999976
Q ss_pred hHHHHHHhhccccEEEEeeecccCchhh-hhhhhhhc------------------------------ccchhhchHHHHh
Q 015196 161 MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIG------------------------------PKLYEANWLDLVK 209 (411)
Q Consensus 161 ~~~~~~~~~~~~~~i~lSATp~~~~~~~-~~~~~~~~------------------------------~~~~~~~~~~~~~ 209 (411)
.-......+.+....++||||..+..-. ..+..+.+ +........++..
T Consensus 481 q~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRRTKdQl~a 560 (901)
T KOG4439|consen 481 QCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRRTKDQLQA 560 (901)
T ss_pred hHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhhhHHhhcc
Confidence 3344556677888999999998766321 00000000 0011111122222
Q ss_pred cCCc---ccceeEEEEcCCCHHHHHHHHhh--------------hchh----h--h------------------------
Q 015196 210 GGFI---ANVQCAEVWCPMTKEFFSEYLKK--------------ENSK----K--K------------------------ 242 (411)
Q Consensus 210 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~----~--~------------------------ 242 (411)
.|-+ .+..+.....+++.+....|... .+.. . .
T Consensus 561 ~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aa 640 (901)
T KOG4439|consen 561 NGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAA 640 (901)
T ss_pred ccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhc
Confidence 2222 12222233333333322211100 0000 0 0
Q ss_pred ------------------hh------------------h----------------------------------------h
Q 015196 243 ------------------QA------------------L----------------------------------------Y 246 (411)
Q Consensus 243 ------------------~~------------------~----------------------------------------~ 246 (411)
+. . .
T Consensus 641 gsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q 720 (901)
T KOG4439|consen 641 GSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQ 720 (901)
T ss_pred CCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhh
Confidence 00 0 0
Q ss_pred hcC----CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCC-CCee
Q 015196 247 VMN----PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS-RDLN 316 (411)
Q Consensus 247 ~~~----~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~-~~~~ 316 (411)
.++ +-|+.....+++..-....++++|...+...+.-+...++ -..++|.....+|.++++.|+.. +..+
T Consensus 721 ~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~r 800 (901)
T KOG4439|consen 721 AFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGAR 800 (901)
T ss_pred hcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCce
Confidence 000 0122222222221111445667777776666665555553 23578999999999999999987 3467
Q ss_pred EEEe-eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHH
Q 015196 317 TIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 393 (411)
Q Consensus 317 vlv~-t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 393 (411)
|++- -.+++.|+|+...+++|+++-.| |++.-.|...|+.|+|++| .+++|.+++.+|.|..+..
T Consensus 801 VmLlSLtAGGVGLNL~GaNHlilvDlHW-NPaLEqQAcDRIYR~GQkK-----------~V~IhR~~~~gTvEqrV~~ 866 (901)
T KOG4439|consen 801 VMLLSLTAGGVGLNLIGANHLILVDLHW-NPALEQQACDRIYRMGQKK-----------DVFIHRLMCKGTVEQRVKS 866 (901)
T ss_pred EEEEEEccCcceeeecccceEEEEeccc-CHHHHHHHHHHHHHhcccC-----------ceEEEEEEecCcHHHHHHH
Confidence 7666 48889999999999999997765 9999999999999999655 5999999999999988763
No 94
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.9e-23 Score=201.18 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCc---cCcc----
Q 015196 267 RGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI---PEAN---- 334 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~---~~~~---- 334 (411)
.+.++||||++++.++.++..|. ...+||.+...++..+...+..+ +|+|||+++++|+|+ |.+.
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~GG 503 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---AVTVATNMAGRGTDIKLGEGVHELGG 503 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---eEEEEccchhcCcCCCcccccccccC
Confidence 57899999999999999999992 45789998888887777777765 899999999999999 6888
Q ss_pred -EEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 335 -VIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 335 -~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+||.+..| .|...|.|++||+||.|.
T Consensus 504 L~VI~~d~p-~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 504 LAVIGTERM-ESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred cEEEeccCC-CCHHHHHHhhccccCCCC
Confidence 88887555 699999999999999996
No 95
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.92 E-value=1.7e-23 Score=184.63 Aligned_cols=297 Identities=16% Similarity=0.153 Sum_probs=194.6
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE-EEcCc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC-RFTSD 105 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~-~~~~~ 105 (411)
.|.|..|+..++..+ .++.++||||+||+++.-.+....++-.||++|..+|+....+.+... ..+..... .++..
T Consensus 22 s~LQE~A~~c~VK~k--~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRK--CDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKLSTV 98 (641)
T ss_pred ChHHHHHHHHHHhcc--CcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchhhHH
Confidence 578999999998866 599999999999999998888888889999999999999989988874 34322111 11111
Q ss_pred hhh-------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhc-CCccEEEEecCCCCCc------h---hHHHHHHh
Q 015196 106 SKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------H---MFRKVISL 168 (411)
Q Consensus 106 ~~~-------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~-~~~~lvIiDE~H~~~~------~---~~~~~~~~ 168 (411)
+.+ .......++..|+++..... +...+..+.+ ....++++||+|..+. + ....+...
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~-----FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDG-----FQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhh-----HHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 111 11234678889998776543 4445555433 4567899999999872 2 23344455
Q ss_pred hccccEEEEeeecccCchhhhhhhh---hhcccchhhchHHHHhcCCcccceeEEEEcCCC-HHHHHHHHhhhchhhhhh
Q 015196 169 TKSHCKLGLTATLVREDERITDLNF---LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT-KEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 169 ~~~~~~i~lSATp~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 244 (411)
+....+++||||-.+.-.. ++.. +-.|+.. +-.|-.- .++. +-.+...+... -..
T Consensus 174 ~~~vpwvALTATA~~~VqE--Di~~qL~L~~PVAi-----------FkTP~FR----~NLFYD~~~K~~I~D~----~~~ 232 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQE--DIAFQLKLRNPVAI-----------FKTPTFR----DNLFYDNHMKSFITDC----LTV 232 (641)
T ss_pred CCCCceEEeecccChhHHH--HHHHHHhhcCcHHh-----------ccCcchh----hhhhHHHHHHHHhhhH----hHh
Confidence 5666899999998643221 2221 1111110 0000000 0000 00011111000 000
Q ss_pred hhhcCCCcHHHHHHHHH------HhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCC
Q 015196 245 LYVMNPNKFRACEFLIR------FHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR 313 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~------~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~ 313 (411)
+. .-+..-+. ..........||||.+++.+++++-.+. +..+|.++...+|-++.+.+.++
T Consensus 233 La-------DF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~- 304 (641)
T KOG0352|consen 233 LA-------DFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN- 304 (641)
T ss_pred HH-------HHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-
Confidence 00 00000000 0000123457999999999999999883 34578899999999999999998
Q ss_pred CeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 314 ~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++.||++|.+.++|+|-|++..|+.++ +..|..-|.|--||+||.|.
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~-~~qn~AgYYQESGRAGRDGk 351 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWS-PSQNLAGYYQESGRAGRDGK 351 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecC-chhhhHHHHHhccccccCCC
Confidence 999999999999999999999999984 55799999999999999995
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=2.2e-23 Score=201.92 Aligned_cols=328 Identities=16% Similarity=0.162 Sum_probs=187.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
+-++||+.+.+..+..+. +.+..++||+|||++++.++ +..++.+.|++|+..|+.|....+.+++......++
T Consensus 53 lg~~p~~vQlig~~~l~~---G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~ 129 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHK---GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVG 129 (745)
T ss_pred hCCCccchHHhhhhhhcC---CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 345666666665554443 44889999999999987765 234678999999999999988888877655455677
Q ss_pred EEcCchhhh---hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH-HHHhhc--cccE
Q 015196 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-VISLTK--SHCK 174 (411)
Q Consensus 101 ~~~~~~~~~---~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~-~~~~~~--~~~~ 174 (411)
.+.++.... ..-..+|+++|+..|....-+.+ .....+.+....+.++|+||+|.+.-...+. ++..-+ ....
T Consensus 130 ~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~-~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 130 LILSGMSPEERREAYACDITYGTNNELGFDYLRDN-MAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcc-cccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 776643211 11247999999997733211111 0001122234677899999999998632222 222111 1123
Q ss_pred EEEeeecccCchh--------------------hhhhhhhhc-ccchhh---chHHHH-----hcC-CcccceeEE----
Q 015196 175 LGLTATLVREDER--------------------ITDLNFLIG-PKLYEA---NWLDLV-----KGG-FIANVQCAE---- 220 (411)
Q Consensus 175 i~lSATp~~~~~~--------------------~~~~~~~~~-~~~~~~---~~~~~~-----~~~-~~~~~~~~~---- 220 (411)
+.++|||....-. ......+++ +..|.. .+...+ ++- +..+..|..
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 4445554321000 000111111 011111 111111 100 001111111
Q ss_pred --EEcCC---------CHHHHHHHHhhhch------------------------------------h-------------
Q 015196 221 --VWCPM---------TKEFFSEYLKKENS------------------------------------K------------- 240 (411)
Q Consensus 221 --~~~~~---------~~~~~~~~~~~~~~------------------------------------~------------- 240 (411)
+.-+. ..+...+.+..... .
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~I 368 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVV 368 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEe
Confidence 00010 01111111111000 0
Q ss_pred --hhh--------hhhhcCCCcHH-HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHH
Q 015196 241 --KKQ--------ALYVMNPNKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTK 304 (411)
Q Consensus 241 --~~~--------~~~~~~~~k~~-~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~ 304 (411)
.++ .++.....|.. ++..+.+.+ ..+.++||||++++.++.+++.|. ...+|+. ..+|+.
T Consensus 369 Ptnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa 444 (745)
T TIGR00963 369 PTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREA 444 (745)
T ss_pred CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHH
Confidence 000 00011112333 334444444 368899999999999999999993 3457777 668888
Q ss_pred HHHHhcCCCCeeEEEeeccCccccCccC-------ccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPE-------ANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 305 ~~~~f~~~~~~~vlv~t~~~~~Gid~~~-------~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+..|..+ ...|+|||+++++|+|++. .-+||....| .|...+.|++||+||.|.
T Consensus 445 ~ii~~ag~-~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p-~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 445 EIIAQAGR-KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERH-ESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred HHHHhcCC-CceEEEEeccccCCcCCCccchhhcCCcEEEecCCC-CcHHHHHHHhccccCCCC
Confidence 89999987 9999999999999999997 3477877555 699999999999999996
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.2e-23 Score=206.96 Aligned_cols=323 Identities=17% Similarity=0.089 Sum_probs=211.1
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
...|.|-++|++++..+..+. +++++||||+|||+++..+++ ..++++++.+|.++|.+|-+++|...++--..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~e---sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGE---SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCC---cEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 356899999999999998876 999999999999999776653 44678999999999999999998876552234
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhccc-
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH- 172 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~~~- 172 (411)
.++.++|+.. .+.++.|+|+|.+.|++...++.. . -.....||+||+|.+... .|...+..++..
T Consensus 192 ~vGL~TGDv~--IN~~A~clvMTTEILRnMlyrg~~------~--~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 192 MVGLMTGDVS--INPDAPCLVMTTEILRNMLYRGSE------S--LRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred hccceeccee--eCCCCceEEeeHHHHHHHhccCcc------c--ccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 5688888765 566789999999998887655421 1 246679999999999965 788888777665
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhc----hHHHHhcCCcccceeEEEEcCCCH---HH----HHHHHhh----h
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEAN----WLDLVKGGFIANVQCAEVWCPMTK---EF----FSEYLKK----E 237 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~----~ 237 (411)
++++||||-.+......|+...-....+-.. ...+. +-+......+.+.-+... +. ...+... .
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~-~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLE-HFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeE-EEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 8999999998777665555432221111000 00000 000000111111111110 00 0001000 0
Q ss_pred chhh-hhhhh----------hcCCCc-HHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----------------
Q 015196 238 NSKK-KQALY----------VMNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------- 288 (411)
Q Consensus 238 ~~~~-~~~~~----------~~~~~k-~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l----------------- 288 (411)
..+. ..... ..-+.+ ..++..+. ..+..++|+|+=++..|+..+..+
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~----~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD----KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhh----hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 0000 00000 000111 12222222 134567888877776666655543
Q ss_pred -----------------------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe
Q 015196 289 -----------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI 339 (411)
Q Consensus 289 -----------------------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~ 339 (411)
+++++|+++-+..+..+...|..| -++|+++|-+++.|+|+|.-++++.-
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-LvkvvFaTeT~s~GiNmPartvv~~~ 495 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-LVKVVFATETFAIGINMPARTVVFTS 495 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-ceeEEeehhhhhhhcCCcccceeeee
Confidence 245789999999999999999998 99999999999999999966666543
Q ss_pred cCC-------CCCHHHHHHHhhcccccCCC
Q 015196 340 SSH-------AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 340 ~~~-------~~s~~~~~Q~~GR~~R~~~~ 362 (411)
... +-+...|.|+-||+||.|-+
T Consensus 496 l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 496 LSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred eEEecCCceeecChhHHHHhhhhhcccccc
Confidence 111 23588999999999999964
No 98
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.7e-22 Score=193.38 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=91.7
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|+|.|..++..++.+ + +..|.||+|||++++.++.. .+..++|++|+..|+.|....+..++......+
T Consensus 101 g~~p~~VQ~~~~~~ll~G----~-Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv 175 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSG----R-LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTV 175 (656)
T ss_pred CCCCChHHHHHHHHHhCC----C-eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEE
Confidence 467889999999888864 2 88999999999998877543 367999999999999998888777654444567
Q ss_pred EEEcCchhh---hhcCCCcEEEEecceecccCCCChhhH--------HHH----------HHHhcCCccEEEEecCCCCC
Q 015196 100 CRFTSDSKE---RFRGNAGVVVTTYNMVAFGGKRSEESE--------KII----------EEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 100 ~~~~~~~~~---~~~~~~~I~v~t~~~l~~~~~~~~~~~--------~~~----------~~~~~~~~~lvIiDE~H~~~ 158 (411)
+.+.++... .....++|+++|...|....-+.+... ... +..-...+.+.|+||++.+.
T Consensus 176 ~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 176 GCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 777665332 122457999999998865432222110 000 11112467889999999875
No 99
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.6e-23 Score=209.15 Aligned_cols=293 Identities=17% Similarity=0.140 Sum_probs=204.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 103 (411)
-..||-|.+++..++.+. ++++.+|||+||+++.-.++....+-.+||+|..+|++.....+.+. +++ ...++
T Consensus 263 ~~FR~~Q~eaI~~~l~Gk---d~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~-~I~---a~~L~ 335 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLSGK---DCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK-GIP---ACFLS 335 (941)
T ss_pred ccCChhHHHHHHHHHcCC---ceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc-Ccc---eeecc
Confidence 358999999999888876 99999999999999998888888889999999999998877777442 343 34444
Q ss_pred Cchhh--------hh-c--CCCcEEEEecceecccCCCChhhHHHHHHHhc-CCccEEEEecCCCCCc------hhHHH-
Q 015196 104 SDSKE--------RF-R--GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HMFRK- 164 (411)
Q Consensus 104 ~~~~~--------~~-~--~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~-~~~~lvIiDE~H~~~~------~~~~~- 164 (411)
+.... .+ . ...+|+..|++++..... ....+..+.. ....++|+||||.... +.|.+
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~----l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEG----LLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccc----hhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 43322 11 1 257899999998876531 1222222221 2357899999999873 34443
Q ss_pred --HHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhh
Q 015196 165 --VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (411)
Q Consensus 165 --~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (411)
+...+....+++||||-...-.. ++....+ ..-..+....+..+--++.+......+
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~--DIi~~L~-----l~~~~~~~~sfnR~NL~yeV~~k~~~~-------------- 470 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVRE--DVIRSLG-----LRNPELFKSSFNRPNLKYEVSPKTDKD-------------- 470 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHH--HHHHHhC-----CCCcceecccCCCCCceEEEEeccCcc--------------
Confidence 33334455899999997532221 1111111 000112223333333333332221100
Q ss_pred hhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeE
Q 015196 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (411)
Q Consensus 243 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~v 317 (411)
.-...+..+...+ .+...||||.+...++.++..| .+..+|+++++.+|..+.+.|..+ +++|
T Consensus 471 --------~~~~~~~~~~~~~---~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~V 538 (941)
T KOG0351|consen 471 --------ALLDILEESKLRH---PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRV 538 (941)
T ss_pred --------chHHHHHHhhhcC---CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeE
Confidence 0012223333333 4788999999999999999998 356899999999999999999998 9999
Q ss_pred EEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|=+.++|+|-|++..||.+ ..++|...|.|-.||+||.|.
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~-~lPks~E~YYQE~GRAGRDG~ 581 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHY-SLPKSFEGYYQEAGRAGRDGL 581 (941)
T ss_pred EEEEeeccCCCCCCceeEEEEC-CCchhHHHHHHhccccCcCCC
Confidence 9999999999999999999998 666899999999999999996
No 100
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=5.2e-23 Score=217.39 Aligned_cols=282 Identities=17% Similarity=0.169 Sum_probs=176.3
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCC--CC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ--DD 97 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~ 97 (411)
.+.|++.|++++..++.+. ++++.||||+|||+.++.++.. .+.+++|++|+++|+.|..+.+..+.... ..
T Consensus 77 G~~pt~iQ~~~i~~il~G~---d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGK---SFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 4579999999999999876 8999999999999965444332 24589999999999999999999875422 12
Q ss_pred cEEEEcCchhh--------hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc---------
Q 015196 98 QICRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (411)
Q Consensus 98 ~v~~~~~~~~~--------~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--------- 159 (411)
.+..++++... .+ .+..+|+|+|++.+.... ..+...+++++|+||||.+..
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~----------~~l~~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNF----------PEMKHLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhH----------HHHhhCCCCEEEEECceeccccccccchhh
Confidence 34455553321 11 235799999998664321 112236789999999999863
Q ss_pred ---h---hHHH----HHH----------------------hhcc-cc-EEEEeeecccCchhhhhhhhhhcc-cchhhch
Q 015196 160 ---H---MFRK----VIS----------------------LTKS-HC-KLGLTATLVREDERITDLNFLIGP-KLYEANW 204 (411)
Q Consensus 160 ---~---~~~~----~~~----------------------~~~~-~~-~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~ 204 (411)
. .+.. ++. .++. .. .+.+|||......... ++.. ..+....
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~----l~~~~l~f~v~~ 299 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVK----LYRELLGFEVGS 299 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHH----HhhcCeEEEecC
Confidence 0 1111 110 1111 22 5678999874322211 1111 1000000
Q ss_pred HHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhH---H
Q 015196 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---L 281 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~---~ 281 (411)
. ...+.... ........+ .+ ..+..+++.. +...||||++.+. +
T Consensus 300 ~----~~~lr~i~--~~yi~~~~~----------------------~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~a 346 (1638)
T PRK14701 300 G----RSALRNIV--DVYLNPEKI----------------------IK-EHVRELLKKL----GKGGLIFVPIDEGAEKA 346 (1638)
T ss_pred C----CCCCCCcE--EEEEECCHH----------------------HH-HHHHHHHHhC----CCCeEEEEeccccchHH
Confidence 0 00111111 110000000 01 1233334322 4578999998764 5
Q ss_pred HHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee----ccCccccCccC-ccEEEEecCCCC---CHHH
Q 015196 282 TEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVGDNSIDIPE-ANVIIQISSHAG---SRRQ 348 (411)
Q Consensus 282 ~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t----~~~~~Gid~~~-~~~vi~~~~~~~---s~~~ 348 (411)
+.+++.|. +..+||+ |...+++|++| +++|||+| +.+++|+|+|+ ++.||++..| + |...
T Consensus 347 e~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~P-k~~~~~e~ 419 (1638)
T PRK14701 347 EEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVP-KFRFRVDL 419 (1638)
T ss_pred HHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEEEEeCCC-CCCcchhh
Confidence 78888883 4567774 88899999998 99999999 47899999998 9999998554 4 4443
Q ss_pred H-------------HHHhhcccccCC
Q 015196 349 E-------------AQRLGRILRAKG 361 (411)
Q Consensus 349 ~-------------~Q~~GR~~R~~~ 361 (411)
+ .+++||++|.|.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 420 EDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred cccchhhhhcchHHHHHhhhhcccCC
Confidence 3 455699999985
No 101
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.2e-23 Score=183.94 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=200.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-C-----CceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~-----~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
+|...|+.|+..++.+. ++...+.+|+|||.+....+.+. . ..+++++|+++|+.|.......+....+..
T Consensus 48 kPSaIQqraI~p~i~G~---dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGH---DVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred CchHHHhccccccccCC---ceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 78999999999999886 99999999999999966666544 2 379999999999999997777665444444
Q ss_pred EEEEcCchh-----hhh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH----HHHHh
Q 015196 99 ICRFTSDSK-----ERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (411)
Q Consensus 99 v~~~~~~~~-----~~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~----~~~~~ 168 (411)
+....++.. ... .....|+++|+..+.....+ ..+....+.+.|+||++.+.+-.+. .+++.
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--------~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--------GSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQE 196 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--------ccccccceeEEeecchHhhhccchHHHHHHHHHH
Confidence 443333111 111 22368999999765443322 1223456779999999999876444 34444
Q ss_pred hccc-cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 169 TKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 169 ~~~~-~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
++.. +++.+|||-...-.... -...-.|........++. .+....+ -+..
T Consensus 197 lp~~vQv~l~SAT~p~~vl~vt-~~f~~~pv~i~vkk~~lt------------------l~gikq~----------~i~v 247 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVLEVT-KKFMREPVRILVKKDELT------------------LEGIKQF----------YINV 247 (397)
T ss_pred cCcchhheeecccCcHHHHHHH-HHhccCceEEEecchhhh------------------hhheeee----------eeec
Confidence 4333 88999999763111100 001111111111111111 0100000 0001
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
....|+..+..+.+ . -...++||++...+..+...|. ...+||.+.+.+|+.+.++|+.| ..+|||+|.
T Consensus 248 ~k~~k~~~l~dl~~--~---~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlIttd 321 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYR--R---VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLITTD 321 (397)
T ss_pred cccccccHHHHHHH--h---hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEeecc
Confidence 11125556666665 2 4578999999999999999983 46799999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+++|+|+.++..|+++.-| .+..+|++++||+||.|.
T Consensus 322 l~argidv~~~slvinydlP-~~~~~yihR~gr~gr~gr 359 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLP-ARKENYIHRIGRAGRFGR 359 (397)
T ss_pred ccccccchhhcceeeeeccc-cchhhhhhhcccccccCC
Confidence 99999999999999998655 599999999999999996
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=177.16 Aligned_cols=285 Identities=18% Similarity=0.177 Sum_probs=195.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
++||.|..+++..+.+. .+++.+|||.||+++.-.++.-.++-.|+++|..+|++...-.+++. |+...-...-++
T Consensus 94 kfrplq~~ain~~ma~e---d~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkql-gi~as~lnanss 169 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGE---DAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQL-GIDASMLNANSS 169 (695)
T ss_pred hcChhHHHHhhhhhccC---ceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHh-CcchhhccCccc
Confidence 57999999999998876 89999999999999999999989999999999999998777777764 554332221111
Q ss_pred chhh--------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc------hhH---HHHHH
Q 015196 105 DSKE--------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMF---RKVIS 167 (411)
Q Consensus 105 ~~~~--------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~------~~~---~~~~~ 167 (411)
.... .-++...++..|++.+...... +.++-..+....+.++-+||+|.++. +.| .-+-+
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaksk~~---mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr 246 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF---MNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR 246 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH---HHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH
Confidence 1110 1124467888999988765432 22333444456788999999999873 222 23446
Q ss_pred hhccccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEE-cCCCHHHHHHHHhhhchhhhhhh
Q 015196 168 LTKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVW-CPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 168 ~~~~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
+++...+++||||..+.-- .+....+. ...+. ...|+-.|--++.+. -|-+.+.
T Consensus 247 qf~~~~iigltatatn~vl--~d~k~il~ie~~~t------f~a~fnr~nl~yev~qkp~n~dd---------------- 302 (695)
T KOG0353|consen 247 QFKGAPIIGLTATATNHVL--DDAKDILCIEAAFT------FRAGFNRPNLKYEVRQKPGNEDD---------------- 302 (695)
T ss_pred hCCCCceeeeehhhhcchh--hHHHHHHhHHhhhe------eecccCCCCceeEeeeCCCChHH----------------
Confidence 6778899999999864221 11111111 00100 123344333222222 2222221
Q ss_pred hhcCCCcHHHHHHHHHHhh-hcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 246 YVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
.++++.+..+ ...|...||||-+.+.+++++..|. +..+|..+.++++...-+.+..| ++.|+|
T Consensus 303 ---------~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqviv 372 (695)
T KOG0353|consen 303 ---------CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIV 372 (695)
T ss_pred ---------HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEE
Confidence 1222222211 0237788999999999999999983 34567788888899899999998 999999
Q ss_pred eeccCccccCccCccEEEEecCCCCCHHHHHH
Q 015196 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q 351 (411)
+|-+.+.|+|-|+++.||.. +.++|...|.|
T Consensus 373 atvafgmgidkpdvrfvihh-sl~ksienyyq 403 (695)
T KOG0353|consen 373 ATVAFGMGIDKPDVRFVIHH-SLPKSIENYYQ 403 (695)
T ss_pred EEeeecccCCCCCeeEEEec-ccchhHHHHHH
Confidence 99999999999999999996 55579999999
No 103
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=1.8e-22 Score=209.19 Aligned_cols=264 Identities=16% Similarity=0.178 Sum_probs=166.9
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCC---C
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQ---D 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~---~ 96 (411)
.+.|+++|+.++..++.+. ++++.||||+|||..++.++. ..+.+++|++|+++|+.|+.+.+.++.... .
T Consensus 76 g~~p~~iQ~~~i~~il~G~---d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD---SFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 3589999999999999875 899999999999986554432 235789999999999999999999876322 1
Q ss_pred CcEEEEcCchhh--------hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-------
Q 015196 97 DQICRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (411)
Q Consensus 97 ~~v~~~~~~~~~--------~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------- 160 (411)
..++.++++... .+ .+..+|+|+|++.+.. ....+.. .++++|+||||++...
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~----------~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSK----------NYDELGP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHH----------HHHHhcC-CCCEEEEeChHhhhhccccHHHH
Confidence 223445553221 11 2358999999987642 2233332 7899999999999752
Q ss_pred ----hH-----HHHH----------------------Hhhcc-cc--EEEEeeecccCchhhhhhhhhhcccchhhchHH
Q 015196 161 ----MF-----RKVI----------------------SLTKS-HC--KLGLTATLVREDERITDLNFLIGPKLYEANWLD 206 (411)
Q Consensus 161 ----~~-----~~~~----------------------~~~~~-~~--~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (411)
.+ ..++ ..++. .+ ++.+|||+........ ++.... ......
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~----l~r~ll-~~~v~~ 296 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAK----LFRELL-GFEVGG 296 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHH----Hccccc-ceEecC
Confidence 11 1111 11111 12 4668999543222211 111100 000000
Q ss_pred HHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecCh---hHHHH
Q 015196 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL---FALTE 283 (411)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~---~~~~~ 283 (411)
....+... ....... ..+...+..+++.. +.++||||++. +.+++
T Consensus 297 --~~~~~r~I--~~~~~~~------------------------~~~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 297 --GSDTLRNV--VDVYVED------------------------EDLKETLLEIVKKL----GTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred --ccccccce--EEEEEec------------------------ccHHHHHHHHHHHc----CCCEEEEEeccccHHHHHH
Confidence 00001111 0111000 00012233444332 45799999998 99999
Q ss_pred HHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee----ccCccccCccC-ccEEEEecCC
Q 015196 284 YAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVGDNSIDIPE-ANVIIQISSH 342 (411)
Q Consensus 284 l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t----~~~~~Gid~~~-~~~vi~~~~~ 342 (411)
+++.|. +..+||+++. ..+++|++| +++|||+| +.+++|+|+|+ ++.||+++.|
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPK----EDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCH----HHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999883 4578999863 678999998 99999994 89999999999 7999997544
No 104
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.3e-23 Score=182.57 Aligned_cols=304 Identities=18% Similarity=0.205 Sum_probs=213.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.+.|.|++.++.++.+. ...-.+-||+|||.+.+..+ .++ +-+.++++|+++|+.|..+-++.+......
T Consensus 43 ~ptpiqRKTipliLe~~---dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~l 119 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGR---DVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKL 119 (529)
T ss_pred CCCchhcccccceeecc---ccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccch
Confidence 68999999999998875 66667889999999977664 333 248999999999999988877776433333
Q ss_pred cEE-EEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHHh
Q 015196 98 QIC-RFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISL 168 (411)
Q Consensus 98 ~v~-~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~~ 168 (411)
... .++++..+ .+..+.+|+++|+..+...... . .+.-....+||+||++++..-.|+. ++..
T Consensus 120 r~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve------m--~l~l~sveyVVfdEadrlfemgfqeql~e~l~r 191 (529)
T KOG0337|consen 120 RQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE------M--TLTLSSVEYVVFDEADRLFEMGFQEQLHEILSR 191 (529)
T ss_pred hhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh------e--eccccceeeeeehhhhHHHhhhhHHHHHHHHHh
Confidence 333 34443332 3345789999999987665311 1 1122455689999999998764443 3443
Q ss_pred hc-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc--CCCHHHHHHHHhhhchhhhhhh
Q 015196 169 TK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 169 ~~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
++ .++.+.||||..+. +.+..+.|...|.-+. +.+ ..++.....+ .
T Consensus 192 l~~~~QTllfSatlp~~-------------------lv~fakaGl~~p~lVR-ldvetkise~lk~~f-----------~ 240 (529)
T KOG0337|consen 192 LPESRQTLLFSATLPRD-------------------LVDFAKAGLVPPVLVR-LDVETKISELLKVRF-----------F 240 (529)
T ss_pred CCCcceEEEEeccCchh-------------------hHHHHHccCCCCceEE-eehhhhcchhhhhhe-----------e
Confidence 33 34889999999742 1222334444443321 211 1111111111 1
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
.....+|..++..++.... ..++++||+.+..+++.+...+ ....++|.++...|...+++|..+ ...++|.
T Consensus 241 ~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEEE
Confidence 1122345566666665442 2567999999999999998888 356789999999999999999998 9999999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCch
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~ 387 (411)
|+.+++|+|+|-.+.||.++.|+ +...|++|+||+.|.|. ...+|.+|+++..
T Consensus 318 TdvaaRG~diplldnvinyd~p~-~~klFvhRVgr~aragr-------------tg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPP-DDKLFVHRVGRVARAGR-------------TGRAYSLVASTDD 370 (529)
T ss_pred ehhhhccCCCccccccccccCCC-CCceEEEEecchhhccc-------------cceEEEEEecccc
Confidence 99999999999999999987664 77889999999999885 3668888876544
No 105
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=2.4e-21 Score=198.25 Aligned_cols=289 Identities=13% Similarity=0.092 Sum_probs=169.8
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcCh----hhHHHHHHHHHHHhCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNA----VSVDQWAFQFKLWSTI 94 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~----~l~~q~~~~~~~~~~~ 94 (411)
......+-.+.+..+..+. .++++++||||||...-.++...+ +.+++.-|++ +|+.+...++..-+|.
T Consensus 72 ~LPi~~~r~~Il~ai~~~~---VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 72 NLPVSQKKQDILEAIRDHQ---VVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred CCCHHHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3444555556666655543 788889999999996443444443 2344445764 6666666666543221
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCC-CCchhHH-----HHHHh
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHMFR-----KVISL 168 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~-~~~~~~~-----~~~~~ 168 (411)
.+|.-.. ..+......+|+++|+..|....... ..-..+++||+||+|+ ..+..+. .++..
T Consensus 149 ---~VGY~vr-f~~~~s~~t~I~v~TpG~LL~~l~~d---------~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 149 ---CVGYKVR-FNDQVSDNTMVKLMTDGILLAEIQQD---------RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred ---eeceeec-CccccCCCCCEEEEChHHHHHHHhcC---------CccccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 2322111 11112345889999999876432110 0125778999999995 4443221 12221
Q ss_pred hccccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHH-HHHHHHhhhchhhhhhhh
Q 015196 169 TKSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALY 246 (411)
Q Consensus 169 ~~~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (411)
.+..++|+||||... . .+..+|+. ..... .|-..++...........+ ....++
T Consensus 216 rpdlKvILmSATid~--e---~fs~~F~~apvI~V-------~Gr~~pVei~y~p~~~~~~~~~~d~l------------ 271 (1294)
T PRK11131 216 RPDLKVIITSATIDP--E---RFSRHFNNAPIIEV-------SGRTYPVEVRYRPIVEEADDTERDQL------------ 271 (1294)
T ss_pred CCCceEEEeeCCCCH--H---HHHHHcCCCCEEEE-------cCccccceEEEeecccccchhhHHHH------------
Confidence 134589999999952 1 22233331 11111 1222232221111110000 000111
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------CceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
..++..+...+. .....+|||+++..+++.+++.|. +..+||+++..+|..+++. .+ ..+||
T Consensus 272 ------~~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g-~rkII 341 (1294)
T PRK11131 272 ------QAIFDAVDELGR-EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS-GRRIV 341 (1294)
T ss_pred ------HHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC-CeeEE
Confidence 011222222222 345689999999999999999883 2347999999999988775 34 78999
Q ss_pred EeeccCccccCccCccEEEEecC-----------------CCCCHHHHHHHhhcccccCC
Q 015196 319 FLSKVGDNSIDIPEANVIIQISS-----------------HAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~-----------------~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||+++++|+|+|++++||.+.. .+-|..++.||.||+||.++
T Consensus 342 VATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~ 401 (1294)
T PRK11131 342 LATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSE 401 (1294)
T ss_pred EeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCC
Confidence 99999999999999999998520 11356789999999999973
No 106
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=3e-21 Score=198.14 Aligned_cols=289 Identities=14% Similarity=0.124 Sum_probs=172.7
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcChhhHHHHHHHHHHHhCCCC-CcEE
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQD-DQIC 100 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~v~ 100 (411)
...+..+.+..+-.+. .++|+|+||||||...-.++...+ +++++.-|++..+......+.+-.+... ..+|
T Consensus 68 i~~~~~~Il~~l~~~~---vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 68 VSAKREDIAEAIAENQ---VVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHHHHHHhCc---eEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 3444455555554443 888999999999997554554433 3566667988777777777776655432 2233
Q ss_pred EEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCC-CCchh-----HHHHHHhhccccE
Q 015196 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM-----FRKVISLTKSHCK 174 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~-~~~~~-----~~~~~~~~~~~~~ 174 (411)
.-. ...+.......|.++|...|....... .. -.++++||+||+|+ ..+.. ...++...+..++
T Consensus 145 Y~v-R~~~~~s~~T~I~~~TdGiLLr~l~~d-------~~--L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 145 YKV-RFHDQVSSNTLVKLMTDGILLAETQQD-------RF--LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred eEE-cCCcccCCCceeeeccccHHHHHhhhC-------cc--cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeE
Confidence 211 111112345789999999876432110 01 25788999999995 44432 2223333344589
Q ss_pred EEEeeecccCchhhhhhhhhhccc-chhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcH
Q 015196 175 LGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (411)
Q Consensus 175 i~lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 253 (411)
|.||||... ..+..+|+.. +.. ..|-..|+..... +...+.... ...+.
T Consensus 215 IlmSATld~-----~~fa~~F~~apvI~-------V~Gr~~PVev~Y~--~~~~~~~~~----------------~~~~~ 264 (1283)
T TIGR01967 215 IITSATIDP-----ERFSRHFNNAPIIE-------VSGRTYPVEVRYR--PLVEEQEDD----------------DLDQL 264 (1283)
T ss_pred EEEeCCcCH-----HHHHHHhcCCCEEE-------ECCCcccceeEEe--cccccccch----------------hhhHH
Confidence 999999952 1233334321 111 1122223222111 111000000 00011
Q ss_pred H-HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC
Q 015196 254 R-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (411)
Q Consensus 254 ~-~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~ 324 (411)
. ++..+..... .....+|||+++..+++.+.+.|. +..+||.++..+|..+++ ..+..+|||||+++
T Consensus 265 ~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~---~~~~rkIVLATNIA 340 (1283)
T TIGR01967 265 EAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ---PHSGRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC---CCCCceEEEeccHH
Confidence 1 1122222222 235689999999999999998883 235799999999988854 33346899999999
Q ss_pred ccccCccCccEEEEecC-----------------CCCCHHHHHHHhhcccccCC
Q 015196 325 DNSIDIPEANVIIQISS-----------------HAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~-----------------~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++|+|+|++.+||.... .+-|..++.||.||+||.++
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~ 394 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAP 394 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCC
Confidence 99999999999998521 11266789999999999994
No 107
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.89 E-value=4.3e-23 Score=174.48 Aligned_cols=160 Identities=23% Similarity=0.417 Sum_probs=108.7
Q ss_pred CCCCChhHHHHHHHHHhC---C-CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~---~-~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
+++|||||.+++..++.. . ...++++.+|||+|||++++.++.++..+++|++|+.+|.+||..+|..+.......
T Consensus 1 ~~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 1 KYKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp --EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 368999999999999742 1 236899999999999999999888777799999999999999999997654321100
Q ss_pred EE------------EEcC----chhhhhcCCCcEEEEecceecccCCCChhhH---HHHHHHhcCCccEEEEecCCCCCc
Q 015196 99 IC------------RFTS----DSKERFRGNAGVVVTTYNMVAFGGKRSEESE---KIIEEIRNREWGLLLMDEVHVVPA 159 (411)
Q Consensus 99 v~------------~~~~----~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~lvIiDE~H~~~~ 159 (411)
.. .... ..........+++++|++++........... ..........+++||+||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00 0000 0011223567899999998876431110000 011122345778999999999999
Q ss_pred hh-HHHHHHhhccccEEEEeeeccc
Q 015196 160 HM-FRKVISLTKSHCKLGLTATLVR 183 (411)
Q Consensus 160 ~~-~~~~~~~~~~~~~i~lSATp~~ 183 (411)
.. |+.++. ..+..+|+|||||.|
T Consensus 161 ~~~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 161 DSSYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp HHHHHHHHH-SSCCEEEEEESS-S-
T ss_pred HHHHHHHHc-CCCCeEEEEEeCccC
Confidence 87 887777 677889999999975
No 108
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.87 E-value=1.6e-20 Score=175.24 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=109.3
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCC-----ceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~ 323 (411)
++.|+..++.|+...+ ..+.++|+|.+-.+.++.+.++|.- --+.|......|..++++|...+.+-.|++|.+
T Consensus 1026 dSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 3456678888886665 5578999999988888888888832 235688888999999999999744567788999
Q ss_pred CccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 324 ~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
++-|+|+..++.||++++.| ++..-.|.+.|++|.|+ .+.+.+|.++.++|.||.+-
T Consensus 1105 GGLGINLTAADTViFYdSDW-NPT~D~QAMDRAHRLGQ-----------Trdvtvyrl~~rgTvEEk~l 1161 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDW-NPTADQQAMDRAHRLGQ-----------TRDVTVYRLITRGTVEEKVL 1161 (1185)
T ss_pred CcccccccccceEEEecCCC-CcchhhHHHHHHHhccC-----------ccceeeeeecccccHHHHHH
Confidence 99999999999999987765 88888999999999994 55699999999999998765
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=9.7e-20 Score=178.95 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=87.2
Q ss_pred HHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCc
Q 015196 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 256 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~ 330 (411)
+..|.++. ..+.+++|||++.+.++.+.+.|. +.++||+++..+|.++++.|+.| .++|||||+.+++|+|+
T Consensus 432 l~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDi 508 (655)
T TIGR00631 432 LSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDL 508 (655)
T ss_pred HHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeee
Confidence 34444433 357899999999999999999983 45789999999999999999998 99999999999999999
Q ss_pred cCccEEEEecC----CCCCHHHHHHHhhcccccC
Q 015196 331 PEANVIIQISS----HAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 331 ~~~~~vi~~~~----~~~s~~~~~Q~~GR~~R~~ 360 (411)
|++++|++++. .+.+...|+|++||++|..
T Consensus 509 P~v~lVvi~DadifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 509 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred CCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC
Confidence 99999988741 2358889999999999986
No 110
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.87 E-value=2.7e-20 Score=167.43 Aligned_cols=356 Identities=18% Similarity=0.201 Sum_probs=225.2
Q ss_pred CCCChhHHHHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHH-Hhc-CCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 24 AQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAA-CRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~-~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
+.|-|||.+.+.=+.... --+.+++...+|-|||..+++++ ++. +.+.|+++|..+ +.||.+++.+++. ....+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VA-lmQW~nEI~~~T~-gslkv 260 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVA-LMQWKNEIERHTS-GSLKV 260 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHH-HHHHHHHHHHhcc-CceEE
Confidence 679999999986553221 22478999999999999987764 344 468999999776 7899999999875 55677
Q ss_pred EEEcCchhhh---hcCCCcEEEEecceecccCC-------CChhhHHHHHHHhcCCccEEEEecCCCCCch--hHHHHHH
Q 015196 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGK-------RSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVIS 167 (411)
Q Consensus 100 ~~~~~~~~~~---~~~~~~I~v~t~~~l~~~~~-------~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~~~~~ 167 (411)
..++|...+. ....++++++||..+.+..+ +.+...+....+..-+|--||+||||.+.+. ...+...
T Consensus 261 ~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~ 340 (791)
T KOG1002|consen 261 YIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVF 340 (791)
T ss_pred EEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHH
Confidence 7888865532 23468999999987755332 2222333444455567778999999999865 3334555
Q ss_pred hhccccEEEEeeecccCchhh-hhh------------------------------------------hhhh---------
Q 015196 168 LTKSHCKLGLTATLVREDERI-TDL------------------------------------------NFLI--------- 195 (411)
Q Consensus 168 ~~~~~~~i~lSATp~~~~~~~-~~~------------------------------------------~~~~--------- 195 (411)
.+...+.++|||||..+.--+ -.+ ..++
T Consensus 341 ~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~Iq 420 (791)
T KOG1002|consen 341 ALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQ 420 (791)
T ss_pred hhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccch
Confidence 567778999999997554210 000 0000
Q ss_pred -----cccchhh-chHHHH------------hcCCcccceeEEEEcCCCH-HH---------------------------
Q 015196 196 -----GPKLYEA-NWLDLV------------KGGFIANVQCAEVWCPMTK-EF--------------------------- 229 (411)
Q Consensus 196 -----~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~--------------------------- 229 (411)
||....+ ....+. +...--|+++..+..+... +.
T Consensus 421 kfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNN 500 (791)
T KOG1002|consen 421 KFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNN 500 (791)
T ss_pred hhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhh
Confidence 0000000 000000 0000112222222221111 00
Q ss_pred --------------------------------------------------------------HHHHHhhhch--------
Q 015196 230 --------------------------------------------------------------FSEYLKKENS-------- 239 (411)
Q Consensus 230 --------------------------------------------------------------~~~~~~~~~~-------- 239 (411)
..+|+.....
T Consensus 501 YAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~ 580 (791)
T KOG1002|consen 501 YANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPV 580 (791)
T ss_pred HHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcc
Confidence 1111110000
Q ss_pred ----------------------hhhhhhh------hcCCCcHHHHHH-HHHHhhhcCCCeEEEEecChhHHHHHHHHhC-
Q 015196 240 ----------------------KKKQALY------VMNPNKFRACEF-LIRFHEQQRGDKIIVFADNLFALTEYAMKLR- 289 (411)
Q Consensus 240 ----------------------~~~~~~~------~~~~~k~~~~~~-l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~- 289 (411)
+...++. -..+.|+.++.+ |.-..+.+..-|.|||.++...++.+.=.|+
T Consensus 581 C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k 660 (791)
T KOG1002|consen 581 CHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK 660 (791)
T ss_pred ccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc
Confidence 0000110 011234444333 3333333455688999999988888777774
Q ss_pred --C--ceeeCCCCHHHHHHHHHHhcCCCCeeEEEe-eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 015196 290 --K--PMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (411)
Q Consensus 290 --~--~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~-t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~ 364 (411)
. .-+.|.+++..|+..++.|++..+++|.+. -.+++..+|+..++.|++++|| +++.--+|...|++|.|+
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW-WNpaVe~Qa~DRiHRIGQ--- 736 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW-WNPAVEWQAQDRIHRIGQ--- 736 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc-ccHHHHhhhhhhHHhhcC---
Confidence 2 235799999999999999999877776555 6999999999999999998665 599999999999999994
Q ss_pred ccccCCCcceeEEEEEeecCCchhHHHHH
Q 015196 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYST 393 (411)
Q Consensus 365 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 393 (411)
-+++.+..++-++++|+.+-+
T Consensus 737 --------~rPvkvvrf~iEnsiE~kIie 757 (791)
T KOG1002|consen 737 --------YRPVKVVRFCIENSIEEKIIE 757 (791)
T ss_pred --------ccceeEEEeehhccHHHHHHH
Confidence 456888999999999987663
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=7.9e-20 Score=178.08 Aligned_cols=350 Identities=15% Similarity=0.119 Sum_probs=200.5
Q ss_pred CCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
...|.+-|+.+++.+... +.....++.+.||||||-+.+.+++. .++.+|+++|-++|..|+..+|...++ ..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~ 272 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG---AK 272 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC---CC
Confidence 468899999999999766 34568999999999999998888754 478999999999999999999999887 46
Q ss_pred EEEEcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---------
Q 015196 99 ICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------- 160 (411)
Q Consensus 99 v~~~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--------- 160 (411)
+.+++++..+ ...+...|+|+|...+..- -.+.++||+||-|.-.-.
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P---------------f~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP---------------FKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc---------------hhhccEEEEeccccccccCCcCCCcCH
Confidence 7777775543 2247789999999876432 256789999999998733
Q ss_pred -hHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcC-------CCHHHHHH
Q 015196 161 -MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-------MTKEFFSE 232 (411)
Q Consensus 161 -~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 232 (411)
..........+..+|+-||||.-.... ...-+... ...+..-...-.+.+..+..+..+ ++....+.
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~~----~~~~g~y~-~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~ 412 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESYA----NAESGKYK-LLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEA 412 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHH----hhhcCceE-EEEccccccccCCCcceEEeccccccccCccCCHHHHHH
Confidence 111122333445789999999732211 00011000 000010000001122222222211 22222222
Q ss_pred HHhhhchhhhhhhhhcCCCc------HHHHHHHH---------HHhhh--------------------cCCCeEEEEec-
Q 015196 233 YLKKENSKKKQALYVMNPNK------FRACEFLI---------RFHEQ--------------------QRGDKIIVFAD- 276 (411)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~k------~~~~~~l~---------~~~~~--------------------~~~~~~ivf~~- 276 (411)
.. +.....++.+...+..- -..|.++. .+|+. +=+...|+++.
T Consensus 413 i~-~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 413 IR-KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred HH-HHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc
Confidence 22 11111111111111000 00111111 11100 00111233222
Q ss_pred ChhH-HHHHHHHh-CC--ceeeCCCC--HHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCC-------C
Q 015196 277 NLFA-LTEYAMKL-RK--PMIYGATS--HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH-------A 343 (411)
Q Consensus 277 ~~~~-~~~l~~~l-~~--~~i~g~~~--~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~-------~ 343 (411)
..+. .+++.+.| ++ ..+.++.. ...-+..+..|.+| +.+|||.|++++.|.|+|+++.|.+++.. +
T Consensus 492 GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 492 GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeeecchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 2222 33344444 33 33444443 33456679999998 99999999999999999999987766211 1
Q ss_pred CC----HHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCC-------c-hhHHHHHHHHHHHhhcCCceeE
Q 015196 344 GS----RRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD-------T-QEMFYSTKRQQFLIDQGYSFKV 408 (411)
Q Consensus 344 ~s----~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~-------~-~~~~~~~~r~~~~~~~g~~~~~ 408 (411)
++ .+.+.|..||+||.+. +| .+.+-+.-.+. . .-+.+++..++.-++.||++..
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~----------~G-~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~ 636 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGK----------PG-EVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFS 636 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCC----------CC-eEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChh
Confidence 11 4457999999999864 22 23333322221 1 1266678888888888887654
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.86 E-value=2.1e-20 Score=187.64 Aligned_cols=321 Identities=17% Similarity=0.107 Sum_probs=192.0
Q ss_pred CCChhHHHHHHHHHhCCCCc-ceEEEcCCCCCHHHHHHHHHH----h---cCCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAAC----R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~-~~ll~~~tG~GKT~~a~~~~~----~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..+++|.++++......... .+++.||||+|||.+++..+. . ...+++.+.|.++++++..+++..+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999999998776555 788899999999999777653 2 246899999999999999999998876543
Q ss_pred CcEEEEcCchhhhhc-CCCc---EEEEecceecccCCC---------------ChhhHHHHHHHhcCCccEEEEecCCCC
Q 015196 97 DQICRFTSDSKERFR-GNAG---VVVTTYNMVAFGGKR---------------SEESEKIIEEIRNREWGLLLMDEVHVV 157 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~-~~~~---I~v~t~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~lvIiDE~H~~ 157 (411)
......++.....+. .... +.+.|.++....... ...... .. ....+++|+||+|.+
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~l~~S~vIlDE~h~~ 350 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LA---LLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HH---HHHhhchhhccHHhh
Confidence 322212333222221 1222 555555544332110 000011 11 123468999999999
Q ss_pred Cch-hHHHHHHh---h--ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHH
Q 015196 158 PAH-MFRKVISL---T--KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (411)
Q Consensus 158 ~~~-~~~~~~~~---~--~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
... ....+... + ....++.||||+...... .+...++........... .+....+ .+ ......
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~--~l~~~~~~~~~~~~~~~~--~~~~~e~---~~----~~~~~~ 419 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKE--KLKKALGKGREVVENAKF--CPKEDEP---GL----KRKERV 419 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHH--HHHHHHhcccceeccccc--ccccccc---cc----ccccch
Confidence 987 43332222 2 234799999999753332 222222211100000000 0000000 00 000000
Q ss_pred HHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHH
Q 015196 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKIL 306 (411)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~ 306 (411)
... ..........+.... ..+.+++|.||+++.|.++++.|+ +.++|+......|.+.+
T Consensus 420 ~~~--------------~~~~~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 420 DVE--------------DGPQEELIELISEEV--KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred hhh--------------hhhhHhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 000 000001111122222 347899999999999999999993 56789999999999888
Q ss_pred HHhcC---CCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeec
Q 015196 307 QAFKC---SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383 (411)
Q Consensus 307 ~~f~~---~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~ 383 (411)
+.+.+ .+...|+|+|++.+.|+|+ +.+++|.-.+ ....++||.||++|.|.. .+...++|....
T Consensus 484 ~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~a---PidSLIQR~GRv~R~g~~---------~~~~~~v~~~~~ 550 (733)
T COG1203 484 RELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELA---PIDSLIQRAGRVNRHGKK---------ENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCC---CHHHHHHHHHHHhhcccc---------cCCceeEeeccc
Confidence 75442 2377999999999999999 4999888533 467799999999999953 233555555554
Q ss_pred CCchhH
Q 015196 384 TDTQEM 389 (411)
Q Consensus 384 ~~~~~~ 389 (411)
......
T Consensus 551 ~~~~~~ 556 (733)
T COG1203 551 RGPYLK 556 (733)
T ss_pred CCCchh
Confidence 444443
No 113
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.6e-20 Score=181.60 Aligned_cols=345 Identities=17% Similarity=0.257 Sum_probs=224.3
Q ss_pred CCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
.+|++||...+.=++... ..-++++...+|.|||...+.++..+ .++.||+||...| ..|..+|..|. +.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL-~NW~~Ef~kWa--PS 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL-VNWSSEFPKWA--PS 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc-CCchhhccccc--cc
Confidence 589999999998876431 23588999999999999988876443 5799999998875 45999999984 32
Q ss_pred CcEEEEcCchhh-------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh--HHHHHH
Q 015196 97 DQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--FRKVIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~~-------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~--~~~~~~ 167 (411)
.....+.|.... ...+..+|+++||+-+... . ..+..-.|..+||||.|++.+.. ....+.
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd-------k---~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~ 539 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD-------K---ALLSKISWKYMIIDEGHRMKNAICKLTDTLN 539 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC-------H---HHHhccCCcceeecccccccchhhHHHHHhh
Confidence 334444442211 1125689999999976542 1 44555688899999999999762 222222
Q ss_pred -hhccccEEEEeeecccCchhhhh--hhhhhcccchhh-chHHHHhc------------------------CCccc----
Q 015196 168 -LTKSHCKLGLTATLVREDERITD--LNFLIGPKLYEA-NWLDLVKG------------------------GFIAN---- 215 (411)
Q Consensus 168 -~~~~~~~i~lSATp~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~------------------------~~~~~---- 215 (411)
.....+.+++||||..+.-...| ++++.+.+.... ++.+..+. ..+.|
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 33455789999999877654322 222222211000 00111000 01111
Q ss_pred ------------ceeEEEEcCCCHHH---HHHHHhhhc-------hhh------------hhh-----------------
Q 015196 216 ------------VQCAEVWCPMTKEF---FSEYLKKEN-------SKK------------KQA----------------- 244 (411)
Q Consensus 216 ------------~~~~~~~~~~~~~~---~~~~~~~~~-------~~~------------~~~----------------- 244 (411)
..-..++|.++.-. |........ ... +++
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 11112222222211 111110000 000 000
Q ss_pred ----hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCC-----ceeeCCCCHHHHHHHHHHhcCC--C
Q 015196 245 ----LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCS--R 313 (411)
Q Consensus 245 ----~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~r~~~~~~f~~~--~ 313 (411)
...-...|+..++.++...+ ..+.+++.|+.-......+..+|.. ..+.|.+...+|...++.|+.. +
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~ 778 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSP 778 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCc
Confidence 00011235566777775555 5688999999988888777777742 3468999999999999999997 3
Q ss_pred CeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHH
Q 015196 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 393 (411)
Q Consensus 314 ~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 393 (411)
-...|.+|.+++-|+|++.++.||++++.| ++....|+..|++|.|+ ...+.++.++..+..+|.+-+
T Consensus 779 yf~FllstragglglNlQtadtviifdsdw-np~~d~qaqdrahrigq-----------~~evRv~rl~tv~sveE~il~ 846 (1157)
T KOG0386|consen 779 YFIFLLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQ-----------KKEVRVLRLITVNSVEEKILA 846 (1157)
T ss_pred eeeeeeeecccccccchhhcceEEEecCCC-CchhHHHHHHHHHHhhc-----------hhheeeeeeehhhHHHHHHHH
Confidence 445777799999999999999999987664 99999999999999995 446999999999998887765
Q ss_pred H
Q 015196 394 K 394 (411)
Q Consensus 394 ~ 394 (411)
+
T Consensus 847 ~ 847 (1157)
T KOG0386|consen 847 E 847 (1157)
T ss_pred H
Confidence 5
No 114
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=1.1e-20 Score=182.54 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=191.9
Q ss_pred CCCChhHHHHHHH--HHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSK--MFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~--~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.++++||.+++.. +.+. .+.+..+||+.|||++|-..+.+ ..+.++.+.|..+.+.+-...+..+..-...
T Consensus 222 ~~~fewq~ecls~~~~~e~---~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLER---KNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHHhcchhhhcc---cceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 4689999999864 3433 48999999999999998666533 3578999999888777766666666422222
Q ss_pred cEEEEcCchh-hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-------
Q 015196 98 QICRFTSDSK-ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT------- 169 (411)
Q Consensus 98 ~v~~~~~~~~-~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~------- 169 (411)
.+..+.|... ....+.-.+.|||.++-.... ....+.-.....++||+||-|.+........++.+
T Consensus 299 ~ve~y~g~~~p~~~~k~~sv~i~tiEkansli------n~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 299 PVEEYAGRFPPEKRRKRESVAIATIEKANSLI------NSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cchhhcccCCCCCcccceeeeeeehHhhHhHH------HHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 3333333322 122345789999999765542 23333333456789999999999976433333222
Q ss_pred -ccc--cEEEEeeecccCchhhhhhhhhhcccchhh--chHHHHhcCCccc-ceeEEEEcCCCHHHHHHHHhhhchhhhh
Q 015196 170 -KSH--CKLGLTATLVREDERITDLNFLIGPKLYEA--NWLDLVKGGFIAN-VQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (411)
Q Consensus 170 -~~~--~~i~lSATp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (411)
... +++|||||..+......++.. .+|.. ....+.+ ++.+ ...+.. . ..+..+.+.. ....
T Consensus 373 ~~~~~~~iIGMSATi~N~~lL~~~L~A----~~y~t~fRPv~L~E--~ik~G~~i~~~--~-r~~~lr~ia~----l~~~ 439 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNSLLQDWLDA----FVYTTRFRPVPLKE--YIKPGSLIYES--S-RNKVLREIAN----LYSS 439 (1008)
T ss_pred ccccceeEeeeecccCChHHHHHHhhh----hheecccCcccchh--ccCCCcccccc--h-hhHHHHHhhh----hhhh
Confidence 122 589999999876665444432 11111 1111111 1100 000000 0 0011111110 0001
Q ss_pred hhhhcCCC-cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh----------------------------------
Q 015196 244 ALYVMNPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------------- 288 (411)
Q Consensus 244 ~~~~~~~~-k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---------------------------------- 288 (411)
.....+++ -...+.+.+ ..+.++||||++++.|+.++..+
T Consensus 440 ~~g~~dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 440 NLGDEDPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hcccCCCcceeeehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 11111221 112222222 23667999999998888777553
Q ss_pred ---------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe---cCCCCCHHHHHHHhhcc
Q 015196 289 ---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---SSHAGSRRQEAQRLGRI 356 (411)
Q Consensus 289 ---------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~---~~~~~s~~~~~Q~~GR~ 356 (411)
++.++|.+.+.++|+.+...|++| .+.|+++|+.++.|+|+|...+++-. ..+..+...|.|++||+
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g-~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFREG-NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHhc-CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 256899999999999999999998 99999999999999999977777764 22334577899999999
Q ss_pred cccCCC
Q 015196 357 LRAKGK 362 (411)
Q Consensus 357 ~R~~~~ 362 (411)
||.|-+
T Consensus 594 GR~gid 599 (1008)
T KOG0950|consen 594 GRTGID 599 (1008)
T ss_pred hhcccc
Confidence 999853
No 115
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=176.88 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCc-----eeeCCCCHHHHHHHHHHhcCCCCe-eEEEeeccC
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP-----MIYGATSHVERTKILQAFKCSRDL-NTIFLSKVG 324 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~-----~i~g~~~~~~r~~~~~~f~~~~~~-~vlv~t~~~ 324 (411)
.|++.+..|++..+ ..|.++|||+.-...++-|...|+-. -+.|.++.++|...+++|+.+..+ -.|++|..+
T Consensus 1260 GKLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46677777887766 66889999999888877777777532 357999999999999999997444 356669999
Q ss_pred ccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHH-----HHHHHH
Q 015196 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST-----KRQQFL 399 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-----~r~~~~ 399 (411)
+.|||+-.++.||++++.| |+.--.|.-.|++|.| +.+.+.+|.||++.|+|+.+-+ ++...+
T Consensus 1339 gvGiNLtgADTVvFYDsDw-NPtMDaQAQDrChRIG-----------qtRDVHIYRLISe~TIEeniLkkanqKr~L~ev 1406 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIG-----------QTRDVHIYRLISERTIEENILKKANQKRMLDEV 1406 (1958)
T ss_pred ccccccccCceEEEecCCC-CchhhhHHHHHHHhhc-----------CccceEEEEeeccchHHHHHHhhhhHHHHHHHH
Confidence 9999999999999987765 8888899999999999 5566999999999999988863 344555
Q ss_pred hhcCCce
Q 015196 400 IDQGYSF 406 (411)
Q Consensus 400 ~~~g~~~ 406 (411)
+.||=+|
T Consensus 1407 aiqggdf 1413 (1958)
T KOG0391|consen 1407 AIQGGDF 1413 (1958)
T ss_pred hhccCCc
Confidence 5666554
No 116
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=3.7e-19 Score=181.82 Aligned_cols=329 Identities=17% Similarity=0.134 Sum_probs=202.0
Q ss_pred CChhHHHHHHHHH----hC---CCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 26 PRPYQEKSLSKMF----GN---GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 26 l~~~Q~~ai~~~~----~~---~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.+.+|-.+++..+ .. +....+++++.||||||++++.++..+ ..++++|+.++.|-.|..++|..+..
T Consensus 249 ~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~ 328 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGK 328 (962)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHH
Confidence 4555666666332 11 234579999999999999988876543 35899999999999999999998753
Q ss_pred CCCCcEEEEcCchh-hhhc-CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHH-HHhhc
Q 015196 94 IQDDQICRFTSDSK-ERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV-ISLTK 170 (411)
Q Consensus 94 ~~~~~v~~~~~~~~-~~~~-~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~-~~~~~ 170 (411)
.........+.... ..+. ....|+|+|.|.|....... .......+.-+||+||||+.......+. ...++
T Consensus 329 ~~~~~~~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~------~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~ 402 (962)
T COG0610 329 VAFNDPKAESTSELKELLEDGKGKIIVTTIQKFNKAVKED------ELELLKRKNVVVIIDEAHRSQYGELAKLLKKALK 402 (962)
T ss_pred hhhhcccccCHHHHHHHHhcCCCcEEEEEecccchhhhcc------cccccCCCcEEEEEechhhccccHHHHHHHHHhc
Confidence 32111112222222 2222 24589999999997754221 0111234556899999999987644444 45556
Q ss_pred cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEE-EcCCCHHHHH-------HHHhhh----c
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFS-------EYLKKE----N 238 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~----~ 238 (411)
....+|+||||....+.. .....+|..+..+...+.+.+|.+.|..+... ..+...+... ...... .
T Consensus 403 ~a~~~gFTGTPi~~~d~~-tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (962)
T COG0610 403 KAIFIGFTGTPIFKEDKD-TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDIL 481 (962)
T ss_pred cceEEEeeCCcccccccc-chhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHH
Confidence 678999999998766653 22457788888899999999999887666554 2222221111 011000 0
Q ss_pred hhhh------hhhhhcCCCcHHHHHHHHHHhhh--cCCCeEEEEecChhHHHHHHHHhC------------Cc----eee
Q 015196 239 SKKK------QALYVMNPNKFRACEFLIRFHEQ--QRGDKIIVFADNLFALTEYAMKLR------------KP----MIY 294 (411)
Q Consensus 239 ~~~~------~~~~~~~~~k~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~------------~~----~i~ 294 (411)
...+ ...........++...+.+.... ..+.++.+.+.+...+..+.+... .. +.+
T Consensus 482 ~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 561 (962)
T COG0610 482 EKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNT 561 (962)
T ss_pred HHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHh
Confidence 0000 11112222334556666644332 334577777777763333333320 00 000
Q ss_pred -----C------CCCHHHHHHHHHHh-cCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCC
Q 015196 295 -----G------ATSHVERTKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 295 -----g------~~~~~~r~~~~~~f-~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~ 362 (411)
. ............+| ...+.+++||.++++-+|+|.|.++++.+. .+- -...++|.+.|++|..++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvD-K~L-k~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 562 EFETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVD-KPL-KYHNLIQAISRTNRVFPG 639 (962)
T ss_pred hcccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEec-ccc-ccchHHHHHHHhccCCCC
Confidence 0 11122333344443 333689999999999999999999999986 443 566799999999999987
Q ss_pred c
Q 015196 363 L 363 (411)
Q Consensus 363 k 363 (411)
+
T Consensus 640 ~ 640 (962)
T COG0610 640 K 640 (962)
T ss_pred C
Confidence 3
No 117
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=8.1e-19 Score=172.82 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=81.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---C--CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccC
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---~--~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid 329 (411)
++..+.+.+ ..+.++||||.+++..+.+++.| + ..++|+.....++..+.+.|+.| .|+|||+++++|+|
T Consensus 433 v~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G---~VtIATNmAGRGtD 507 (896)
T PRK13104 433 IIEDVRECG--VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG---AVTIATNMAGRGTD 507 (896)
T ss_pred HHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC---cEEEeccCccCCcc
Confidence 444454555 36889999999999999999999 2 35789999999999999999998 59999999999999
Q ss_pred ccCcc---------------------------------------EEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 330 IPEAN---------------------------------------VIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 330 ~~~~~---------------------------------------~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+. +. +||...++ .|..--.|..||+||.|.
T Consensus 508 I~-Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerh-esrRID~QLrGRaGRQGD 576 (896)
T PRK13104 508 IV-LGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERH-ESRRIDNQLRGRAGRQGD 576 (896)
T ss_pred ee-cCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccC-chHHHHHHhccccccCCC
Confidence 86 21 34443344 588888999999999996
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=7e-19 Score=172.35 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=79.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHh---C--CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCcc---Ccc---
Q 015196 266 QRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---EAN--- 334 (411)
Q Consensus 266 ~~~~~~ivf~~~~~~~~~l~~~l---~--~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~---~~~--- 334 (411)
..+.++||||++++.++.+++.| + ...+|++....++..+.+.++.| .|+|+|+++++|+|++ ++.
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g---~VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG---AVTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc---eEEEEeccccCCCCCCCCcchhhhC
Confidence 35889999999999999999999 2 45688988877888888888887 5999999999999995 777
Q ss_pred --EEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 335 --VIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 335 --~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+||....| .|...+.|++||+||.|.
T Consensus 515 GLhVI~te~p-es~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 515 GLAVIGTERH-ESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CcEEEeeecC-CcHHHHHHHhhhhccCCC
Confidence 88887555 699999999999999996
No 119
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.4e-18 Score=170.88 Aligned_cols=129 Identities=19% Similarity=0.108 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEE
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~ 102 (411)
++||=.+.+..++-+. .-+..+.||+|||+++..++. ..++.+-+++|+..|+.|....+..++......++.+
T Consensus 80 ~~~~dvQlig~l~L~~---G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i 156 (830)
T PRK12904 80 MRHFDVQLIGGMVLHE---GKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVI 156 (830)
T ss_pred CCCCccHHHhhHHhcC---CchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 4444444444443333 458899999999999877752 3356788999999999998887777665444567777
Q ss_pred cCchhhhh---cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 103 TSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 103 ~~~~~~~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.++..... .-.++|+++|+..|....-+.+... .........+.++|+||++.+.
T Consensus 157 ~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~-~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 157 LSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVF-SLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred cCCCCHHHHHHhcCCCeEEECCcchhhhhhhccccc-chhhhcccccceEEEechhhhe
Confidence 76433211 1237999999998843221111100 1112223567899999999976
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.80 E-value=1.2e-16 Score=158.58 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=87.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccC
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid 329 (411)
.+..|..+. ..+.+++|||++.+.++.+.+.|. +..+||+++..+|..+++.|+.| .+.|+|||+.+++|+|
T Consensus 435 L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 435 LLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHHhCCcc
Confidence 334444433 357899999999999999999983 45689999999999999999998 9999999999999999
Q ss_pred ccCccEEEEecC----CCCCHHHHHHHhhcccccC
Q 015196 330 IPEANVIIQISS----HAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 330 ~~~~~~vi~~~~----~~~s~~~~~Q~~GR~~R~~ 360 (411)
+|++++|++... .+.+...|+|++||+||..
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~ 546 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCCC
Confidence 999999888743 1358899999999999964
No 121
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=3.8e-17 Score=158.01 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCC-
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~- 97 (411)
+.|-.||++.+...=.+. +++++|||.+|||++....+.+. .+.+++++|+++|+.|...++...++...-
T Consensus 510 F~Pd~WQ~elLDsvDr~e---SavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNE---SAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhccc---ceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 667889999988876655 89999999999999976665432 368999999999999999887665432211
Q ss_pred cEEEEcCchhhhhc---CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhc
Q 015196 98 QICRFTSDSKERFR---GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK 170 (411)
Q Consensus 98 ~v~~~~~~~~~~~~---~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~ 170 (411)
....+-+....++. ..++|.|+.++.+....... .-...+. .++..+|+||+|.+++. .|..+... .
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlsp---p~~q~~c--erIRyiIfDEVH~iG~~ed~l~~Eqll~l-i 660 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSP---PHHQKFC--ERIRYIIFDEVHLIGNEEDGLLWEQLLLL-I 660 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCc---hhhhhhh--hcceEEEechhhhccccccchHHHHHHHh-c
Confidence 11122233222222 25899999998776543221 0011122 46679999999999975 45544444 3
Q ss_pred cccEEEEeeecccCchhhhh
Q 015196 171 SHCKLGLTATLVREDERITD 190 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~ 190 (411)
...++++|||..+......|
T Consensus 661 ~CP~L~LSATigN~~l~qkW 680 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNPNLFQKW 680 (1330)
T ss_pred CCCeeEEecccCCHHHHHHH
Confidence 44689999998765544333
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.77 E-value=3.9e-18 Score=146.38 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=106.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-------CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
.|+++|+++++.+..+. ++++.+|||+|||++++..+ ..+ +.+++|++|+++|+.|+...+..+.....
T Consensus 21 ~~~~~Q~~~~~~~~~~~---~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~ 97 (203)
T cd00268 21 KPTPIQARAIPPLLSGR---DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTN 97 (203)
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 58999999999998854 89999999999999865543 222 24799999999999999999998865545
Q ss_pred CcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHH
Q 015196 97 DQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~ 167 (411)
..+..+.++.. ..+....+|+|+|++.+.....+.. +.-..++++|+||+|++.+..+.. +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--------~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 98 LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--------LDLSKVKYLVLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--------CChhhCCEEEEeChHHhhccChHHHHHHHHH
Confidence 55566655332 1223468999999987755432211 112456899999999987554332 333
Q ss_pred hhc-cccEEEEeeeccc
Q 015196 168 LTK-SHCKLGLTATLVR 183 (411)
Q Consensus 168 ~~~-~~~~i~lSATp~~ 183 (411)
.+. ..+++++||||.+
T Consensus 170 ~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 170 LLPKDRQTLLFSATMPK 186 (203)
T ss_pred hCCcccEEEEEeccCCH
Confidence 333 4579999999984
No 123
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=143.34 Aligned_cols=262 Identities=16% Similarity=0.166 Sum_probs=168.4
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH-HHhcC-----CceEEEEcChhhHHHHHHHHHHHhCC-CCCc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-ACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTI-QDDQ 98 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~-~~~~~-----~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~ 98 (411)
|...|.++|...+.+- ++++.|..|-|||.+.... +.++. -.++++|.+++|+-|...++.+|... |..+
T Consensus 65 psevqhecipqailgm---dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred chHhhhhhhhHHhhcc---hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 5566888887766554 7899999999999885444 33332 37999999999999999998888664 4556
Q ss_pred EEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHHHHHHhhc-
Q 015196 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTK- 170 (411)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~~~~~~~~- 170 (411)
+.++.|+.. +.+....+|+|+|+..+....+. ..++-....-.|+|||+.+... .++.+.+.++
T Consensus 142 vaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--------k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~ 213 (387)
T KOG0329|consen 142 VSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--------RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM 213 (387)
T ss_pred EEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--------ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhc
Confidence 777776432 22234579999999866543221 1222245567899999998865 4444444442
Q ss_pred ---cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 171 ---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 171 ---~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
..++..+|||....-...-.-+..-+-.++-.+-..+.-+ ....-| +..
T Consensus 214 tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLH-----------------GLqQ~Y-----------vkL 265 (387)
T KOG0329|consen 214 TPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLH-----------------GLQQYY-----------VKL 265 (387)
T ss_pred CcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhh-----------------hHHHHH-----------Hhh
Confidence 2377899999975322210000000000000000000000 011111 122
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccc
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~G 327 (411)
.+..|.+.+..|++..+ -++++||+.++..+ . | ..+ +|+|+..++|
T Consensus 266 ke~eKNrkl~dLLd~Le---FNQVvIFvKsv~Rl-------------------------~-f----~kr-~vat~lfgrg 311 (387)
T KOG0329|consen 266 KENEKNRKLNDLLDVLE---FNQVVIFVKSVQRL-------------------------S-F----QKR-LVATDLFGRG 311 (387)
T ss_pred hhhhhhhhhhhhhhhhh---hcceeEeeehhhhh-------------------------h-h----hhh-hHHhhhhccc
Confidence 23344456677777776 67899999987651 0 3 124 8999999999
Q ss_pred cCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 328 id~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+-.++.++.++.| .+..+|.+++||+||.|.
T Consensus 312 mdiervNi~~NYdmp-~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 312 MDIERVNIVFNYDMP-EDSDTYLHRVARAGRFGT 344 (387)
T ss_pred cCcccceeeeccCCC-CCchHHHHHhhhhhcccc
Confidence 999999999998666 588999999999999995
No 124
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=6e-17 Score=159.33 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcccc
Q 015196 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (411)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gi 328 (411)
.+++.+.+.++ .|.++||||.+++..+.++..|. ...+|+..+..++..+.+.|+.| . |+|||+++++|+
T Consensus 437 Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G-~--VtIATnmAGRGT 511 (908)
T PRK13107 437 AIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG-A--VTIATNMAGRGT 511 (908)
T ss_pred HHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC-c--EEEecCCcCCCc
Confidence 45555555554 68899999999999999999983 34688999999999999999998 4 999999999999
Q ss_pred CccCcc--------------------------------------EEEEecCCCCCHHHHHHHhhcccccCCCccccccCC
Q 015196 329 DIPEAN--------------------------------------VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (411)
Q Consensus 329 d~~~~~--------------------------------------~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~ 370 (411)
|+. +. +||...++ .|..--.|..||+||.|.
T Consensus 512 DIk-Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerh-eSrRID~QLrGRaGRQGD--------- 580 (908)
T PRK13107 512 DIV-LGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERH-ESRRIDNQLRGRAGRQGD--------- 580 (908)
T ss_pred cee-cCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccC-chHHHHhhhhcccccCCC---------
Confidence 986 21 34443344 588888999999999996
Q ss_pred CcceeEEEEEe
Q 015196 371 KEEYNAFFYSL 381 (411)
Q Consensus 371 ~~~~~~~~y~~ 381 (411)
+|...+|..+
T Consensus 581 -PGss~f~lSl 590 (908)
T PRK13107 581 -AGSSRFYLSM 590 (908)
T ss_pred -CCceeEEEEe
Confidence 5555555544
No 125
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.76 E-value=9.4e-18 Score=139.66 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=106.7
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEE
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 101 (411)
+|+|.+++..+..+. +.++.+|||+|||++++.++.. + ..++++++|+.+|++|..+++..++......+..
T Consensus 1 t~~Q~~~~~~i~~~~---~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGK---NVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTS---EEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCC---CEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 489999999999654 8999999999999998766532 2 2389999999999999999999987765556677
Q ss_pred EcCchhh------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----HHHHHHhh--
Q 015196 102 FTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT-- 169 (411)
Q Consensus 102 ~~~~~~~------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~----~~~~~~~~-- 169 (411)
+.++... ....+.+|+|+|+++|....... .......++||+||+|.+.... +..+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--------~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--------KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--------SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccCcchhhcccccc--------ccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 6664321 22356999999999876542110 0012347899999999998753 33344443
Q ss_pred -ccccEEEEeeecc
Q 015196 170 -KSHCKLGLTATLV 182 (411)
Q Consensus 170 -~~~~~i~lSATp~ 182 (411)
...+++++||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 2457999999997
No 126
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=1.3e-16 Score=166.70 Aligned_cols=350 Identities=18% Similarity=0.245 Sum_probs=223.0
Q ss_pred CCCChhHHHHHHHHHh--CCCCcceEEEcCCCCCHHHHHHHHHHh---c----CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 24 AQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACR---I----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~--~~~~~~~ll~~~tG~GKT~~a~~~~~~---~----~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
..|++||.+.++-+.. .....++++...+|.|||+.++..+.. . .++++++||. +++.+|.+++.+|...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 5799999999976541 112357888999999999998887643 1 2479999995 6799999999887432
Q ss_pred CCCc-EEEEcCchh------hhh---cC-----CCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc
Q 015196 95 QDDQ-ICRFTSDSK------ERF---RG-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (411)
Q Consensus 95 ~~~~-v~~~~~~~~------~~~---~~-----~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~ 159 (411)
.. +..+.+... ... .. ..+++++||+.+.... .....+....++.+|+||+|.+.+
T Consensus 416 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 416 --LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred --ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHHHhh
Confidence 33 555555432 111 11 1689999999886521 123555667889999999999886
Q ss_pred h---hHHHHHHhhccccEEEEeeecccCchhh-hhhhh-hhcccchhhc------------------------------h
Q 015196 160 H---MFRKVISLTKSHCKLGLTATLVREDERI-TDLNF-LIGPKLYEAN------------------------------W 204 (411)
Q Consensus 160 ~---~~~~~~~~~~~~~~i~lSATp~~~~~~~-~~~~~-~~~~~~~~~~------------------------------~ 204 (411)
. .+..+. .+.....+.+|+||..+.... ..+.. +..|..+..+ .
T Consensus 487 ~~s~~~~~l~-~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 487 DQSSEGKALQ-FLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred hhhHHHHHHH-HHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 5 344344 667777899999995333221 11122 2222221100 0
Q ss_pred HHHHhcCCc-------------ccceeEEEEcCCCH---HHHHHHHh---hhc--------hh---------hhhh----
Q 015196 205 LDLVKGGFI-------------ANVQCAEVWCPMTK---EFFSEYLK---KEN--------SK---------KKQA---- 244 (411)
Q Consensus 205 ~~~~~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~---~~~--------~~---------~~~~---- 244 (411)
..++..-.+ .+.......+++.. ..+..... ... .. ....
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 010100000 01111111122222 11222221 000 00 0000
Q ss_pred -----hh-----hcCC------------------------------CcHHHHHHHH-HHhhhcCCC--eEEEEecChhHH
Q 015196 245 -----LY-----VMNP------------------------------NKFRACEFLI-RFHEQQRGD--KIIVFADNLFAL 281 (411)
Q Consensus 245 -----~~-----~~~~------------------------------~k~~~~~~l~-~~~~~~~~~--~~ivf~~~~~~~ 281 (411)
++ .... .|...+..++ .... ..+. ++++|++.....
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l 724 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVL 724 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHH
Confidence 00 0001 4566666666 3333 3466 999999999998
Q ss_pred HHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCee-EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhc
Q 015196 282 TEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355 (411)
Q Consensus 282 ~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~-vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR 355 (411)
+.+...+. ...++|.++...|...++.|.+++... +++++.+++.|+|+..++.|++++++ +++....|.+.|
T Consensus 725 ~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~-wnp~~~~Qa~dR 803 (866)
T COG0553 725 DLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPW-WNPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccc-cChHHHHHHHHH
Confidence 88777773 345789999999999999999963444 55557899999999999999998666 499999999999
Q ss_pred ccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHH
Q 015196 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (411)
Q Consensus 356 ~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~ 397 (411)
++|.| +...+.+|.++..+|.|+.+.+....
T Consensus 804 a~Rig-----------Q~~~v~v~r~i~~~tiEe~i~~~~~~ 834 (866)
T COG0553 804 AHRIG-----------QKRPVKVYRLITRGTIEEKILELQEK 834 (866)
T ss_pred HHHhc-----------CcceeEEEEeecCCcHHHHHHHHHHH
Confidence 99999 45569999999999999887755443
No 127
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.73 E-value=6e-16 Score=153.42 Aligned_cols=299 Identities=16% Similarity=0.155 Sum_probs=183.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCC-CcE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQI 99 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~v 99 (411)
.-.....+.+.++-.+. .++|.+|||+|||...-..+.+. ++.+.+.=|++..+......+.+-++... ..|
T Consensus 50 Pv~~~~~~i~~ai~~~~---vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 50 PVTAVRDEILKAIEQNQ---VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred CcHHHHHHHHHHHHhCC---EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 33445555555555554 88999999999998755554433 24777888998777777777777655432 233
Q ss_pred EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHHHHHhhc-cc
Q 015196 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTK-SH 172 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~~~~~~~-~~ 172 (411)
|.--. ..+.......|-++|-..|.... .....-..+++||+||+|+=.-. -...++...+ ..
T Consensus 127 GY~iR-fe~~~s~~Trik~mTdGiLlrei---------~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 127 GYSIR-FESKVSPRTRIKVMTDGILLREI---------QNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred eEEEE-eeccCCCCceeEEeccHHHHHHH---------hhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 32111 11112345788899998775432 11212367899999999996633 2222334444 35
Q ss_pred cEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCC
Q 015196 173 CKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (411)
++|.||||... ..+..+|+. .+.. -.|-..|+............. +
T Consensus 197 KiIimSATld~-----~rfs~~f~~apvi~-------i~GR~fPVei~Y~~~~~~d~~----l----------------- 243 (845)
T COG1643 197 KLIIMSATLDA-----ERFSAYFGNAPVIE-------IEGRTYPVEIRYLPEAEADYI----L----------------- 243 (845)
T ss_pred eEEEEecccCH-----HHHHHHcCCCCEEE-------ecCCccceEEEecCCCCcchh----H-----------------
Confidence 89999999962 223344442 1111 133344443322111111110 1
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~---------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
...+...+..+..+..+.+|||.....+++...+.|. +.-+||.++..++..+++--..+ .-+|+++|+
T Consensus 244 -~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~-~RKVVlATN 321 (845)
T COG1643 244 -LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG-KRKVVLATN 321 (845)
T ss_pred -HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC-cceEEEEcc
Confidence 1223333333322446689999999988877666663 23478999999988876555554 445999999
Q ss_pred cCccccCccCccEEEEe--------cC---------CCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCC
Q 015196 323 VGDNSIDIPEANVIIQI--------SS---------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~--------~~---------~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~ 385 (411)
++++++.+|++.+||-. ++ .+-|..+..||.||+||.++ ...|.+.+++
T Consensus 322 IAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p--------------GicyRLyse~ 387 (845)
T COG1643 322 IAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP--------------GICYRLYSEE 387 (845)
T ss_pred ccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC--------------ceEEEecCHH
Confidence 99999999999999853 00 01245667999999999995 5567777653
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.72 E-value=1.2e-15 Score=156.65 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccc
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~G 327 (411)
++..|.+... ..+.+++||+++.+.++.++..+. ..++..+.. ..|..+++.|+++ +..||++|+.+.||
T Consensus 662 ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~-~~~iLlgt~sf~EG 738 (850)
T TIGR01407 662 IASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG-EKAILLGTSSFWEG 738 (850)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC-CCeEEEEcceeecc
Confidence 3444444433 335689999999999999998874 234443333 4788899999997 88999999999999
Q ss_pred cCccCccE--EEEecCCCCC-----------------------------HHHHHHHhhcccccCC
Q 015196 328 IDIPEANV--IIQISSHAGS-----------------------------RRQEAQRLGRILRAKG 361 (411)
Q Consensus 328 id~~~~~~--vi~~~~~~~s-----------------------------~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+... ||+..-|+.+ ...+.|.+||+.|...
T Consensus 739 VD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~ 803 (850)
T TIGR01407 739 VDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREN 803 (850)
T ss_pred cccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCC
Confidence 99998884 4444222211 1234899999999875
No 129
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=7e-17 Score=152.50 Aligned_cols=130 Identities=27% Similarity=0.381 Sum_probs=105.5
Q ss_pred cCCCeEEEEecChhHHHHHHHHhC---C------------------c--eeeCCCCHHHHHHHHHHhcCCCCee--EEEe
Q 015196 266 QRGDKIIVFADNLFALTEYAMKLR---K------------------P--MIYGATSHVERTKILQAFKCSRDLN--TIFL 320 (411)
Q Consensus 266 ~~~~~~ivf~~~~~~~~~l~~~l~---~------------------~--~i~g~~~~~~r~~~~~~f~~~~~~~--vlv~ 320 (411)
.-+.++|||..+...++.+.+.++ + . -+.|..+..+|+..++.|++..... ++++
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 346889999999888777777662 1 1 2467888999999999999975554 6777
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHh
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~ 400 (411)
|.++.-|+|+-..+.+++++..| ++..-.|.+.|+.|+|++| .+++|.+|...+.|..++.|+ +.
T Consensus 797 trag~lGinLIsanr~~ifda~w-npchdaqavcRvyrYGQ~K-----------pcfvYRlVmD~~lEkkIydRQ---Is 861 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFDACW-NPCHDAQAVCRVYRYGQQK-----------PCFVYRLVMDNSLEKKIYDRQ---IS 861 (1387)
T ss_pred hccccccceeeccceEEEEEeec-CccccchhhhhhhhhcCcC-----------ceeEEeehhhhhhHHHHHHHH---Hh
Confidence 99999999998888655553433 7778899999999999655 599999999999999999887 88
Q ss_pred hcCCceeEee
Q 015196 401 DQGYSFKVHH 410 (411)
Q Consensus 401 ~~g~~~~~~~ 410 (411)
+||-+=||+|
T Consensus 862 KqGmsdRvVD 871 (1387)
T KOG1016|consen 862 KQGMSDRVVD 871 (1387)
T ss_pred hccchhhhhc
Confidence 9999988886
No 130
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.72 E-value=4.7e-17 Score=144.56 Aligned_cols=276 Identities=15% Similarity=0.181 Sum_probs=166.6
Q ss_pred ceEEEEcChhhHHHHHHH---HHHHhCCCCCcEEE-EcC----chhhhhcCCCcEEEEecceecccCCCChhhHHHHHHH
Q 015196 70 SCLCLATNAVSVDQWAFQ---FKLWSTIQDDQICR-FTS----DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141 (411)
Q Consensus 70 ~~lil~P~~~l~~q~~~~---~~~~~~~~~~~v~~-~~~----~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~ 141 (411)
..+|+-|+++|++|.... |+.++..+..+.-. +.+ .....+....+|+|+|+..+...... ..+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--------g~~ 359 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--------GLV 359 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--------cce
Confidence 689999999999999885 44444333222112 222 22223345689999999866432211 011
Q ss_pred hcCCccEEEEecCCCCCchhHHHHHHhhcc-----------ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhc
Q 015196 142 RNREWGLLLMDEVHVVPAHMFRKVISLTKS-----------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 210 (411)
Q Consensus 142 ~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~-----------~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (411)
.-....++++||++.+....|...+..+.. .+.+.+|||........ +-..+.....|.++...
T Consensus 360 ~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk-----~~ervmhfptwVdLkge 434 (725)
T KOG0349|consen 360 TLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKK-----VGERVMHFPTWVDLKGE 434 (725)
T ss_pred eeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeee-----hhhhhccCceeEecccc
Confidence 112456899999999998766655554421 15688999987544321 00001111233344332
Q ss_pred CCcccceeEEEEc---CCCHHH---HHHHHhhhchhhhh--hhhhcCCCcHHHHHHHHH------HhhhcCCCeEEEEec
Q 015196 211 GFIANVQCAEVWC---PMTKEF---FSEYLKKENSKKKQ--ALYVMNPNKFRACEFLIR------FHEQQRGDKIIVFAD 276 (411)
Q Consensus 211 ~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~l~~------~~~~~~~~~~ivf~~ 276 (411)
..+ |-.++.+.+ +..... .+..+....-..+. .....++.-......|++ .......+++||||.
T Consensus 435 D~v-petvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcr 513 (725)
T KOG0349|consen 435 DLV-PETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCR 513 (725)
T ss_pred ccc-chhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEe
Confidence 222 222222221 111111 12222111111111 111112221111222221 112244789999999
Q ss_pred ChhHHHHHHHHhC--------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHH
Q 015196 277 NLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQ 348 (411)
Q Consensus 277 ~~~~~~~l~~~l~--------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~ 348 (411)
+...|+.+.++++ ..++||+..+.+|.+.++.|+.. +++.||||+.+++|+|+..+-.+|... .+.....
T Consensus 514 tk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflictdvaargldi~g~p~~invt-lpd~k~n 591 (725)
T KOG0349|consen 514 TKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICTDVAARGLDITGLPFMINVT-LPDDKTN 591 (725)
T ss_pred ccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEehhhhccccccCCceEEEEe-cCcccch
Confidence 9999999999983 45799999999999999999998 999999999999999999999999984 4468999
Q ss_pred HHHHhhcccccCC
Q 015196 349 EAQRLGRILRAKG 361 (411)
Q Consensus 349 ~~Q~~GR~~R~~~ 361 (411)
|++||||+||...
T Consensus 592 yvhrigrvgraer 604 (725)
T KOG0349|consen 592 YVHRIGRVGRAER 604 (725)
T ss_pred hhhhhhccchhhh
Confidence 9999999999764
No 131
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.4e-15 Score=142.95 Aligned_cols=287 Identities=16% Similarity=0.180 Sum_probs=180.2
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcChhhHHHHHHHHHHHhCC-CCCcEEE
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTI-QDDQICR 101 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~v~~ 101 (411)
+.+-.+.+..+-.+. -.++.++||||||...-..+.+.+ +++-+.-|++..+-...++...-.+. ....||.
T Consensus 53 ~~~r~~il~~ve~nq---vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQ---VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHCC---EEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 444455555555554 888999999999988666665443 45777779987666666665543332 1223332
Q ss_pred EcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHHHHHhhccccEE
Q 015196 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKL 175 (411)
Q Consensus 102 ~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~~~~~~~~~~~i 175 (411)
-- .-.+...+...|.+.|-.+|..- ....=...++++||+||||+=.-. -.++++..-+..++|
T Consensus 130 ~I-RFed~ts~~TrikymTDG~LLRE---------~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 130 TI-RFEDSTSKDTRIKYMTDGMLLRE---------ILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred EE-EecccCCCceeEEEecchHHHHH---------HhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEE
Confidence 11 11111223578899998877542 111111357899999999996532 233344443445899
Q ss_pred EEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHH
Q 015196 176 GLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (411)
Q Consensus 176 ~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 254 (411)
.+|||..- .....+|.. .+.. -.|-..|+.+.... +-..+|+. .
T Consensus 200 imSATlda-----~kfS~yF~~a~i~~-------i~GR~fPVei~y~~-----~p~~dYv~------------------a 244 (674)
T KOG0922|consen 200 IMSATLDA-----EKFSEYFNNAPILT-------IPGRTFPVEILYLK-----EPTADYVD------------------A 244 (674)
T ss_pred EEeeeecH-----HHHHHHhcCCceEe-------ecCCCCceeEEecc-----CCchhhHH------------------H
Confidence 99999962 122334432 1111 13444454432222 12223331 2
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t 321 (411)
++..+++.|..++..-+|||....++++...+.|. +..+||.++.+++..+.+.-..| .-+|+++|
T Consensus 245 ~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g-~RKvIlsT 323 (674)
T KOG0922|consen 245 ALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG-KRKVILST 323 (674)
T ss_pred HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-cceEEEEc
Confidence 34445555554556679999999999888887772 13489999999988887666665 77899999
Q ss_pred ccCccccCccCccEEEEe--------cCC---------CCCHHHHHHHhhcccccCCC
Q 015196 322 KVGDNSIDIPEANVIIQI--------SSH---------AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~--------~~~---------~~s~~~~~Q~~GR~~R~~~~ 362 (411)
+++++.+.++.+..||-. .+. +-|...-.||.||+||.+++
T Consensus 324 NIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pG 381 (674)
T KOG0922|consen 324 NIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPG 381 (674)
T ss_pred ceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCc
Confidence 999999999999988742 110 12566779999999999953
No 132
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=4.3e-15 Score=146.71 Aligned_cols=132 Identities=16% Similarity=0.045 Sum_probs=89.5
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-h--cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~--~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.++|+|.+++..++.+. +.+..|+||+|||++++.++. . .+..++||+|+..|+.|..+.+..+.......+
T Consensus 90 p~~~tp~qvQ~I~~i~l~~---gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV 166 (970)
T PRK12899 90 QWDMVPYDVQILGAIAMHK---GFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTT 166 (970)
T ss_pred CCCCChHHHHHhhhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 3458999999999998775 788899999999999887754 2 235699999999999998877766544333456
Q ss_pred EEEcCchhhh---hcCCCcEEEEeccee-cccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 100 CRFTSDSKER---FRGNAGVVVTTYNMV-AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 100 ~~~~~~~~~~---~~~~~~I~v~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
+.+.++.... ..-.++|+++|+..| ....+.........+.+ ...+.++|+|||+.+.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~v-qr~~~~~IIDEADsmL 228 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQV-GRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhh-cccccEEEEechhhhh
Confidence 6655432210 011479999999988 32222210111111112 2466799999999986
No 133
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.70 E-value=1.1e-16 Score=146.15 Aligned_cols=153 Identities=19% Similarity=0.318 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhC----------CCCcceEEEcCCCCCHHHHHHHHHHhc---C-----CceEEEEcChhhHHHHHHHHHH
Q 015196 29 YQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 29 ~Q~~ai~~~~~~----------~~~~~~ll~~~tG~GKT~~a~~~~~~~---~-----~~~lil~P~~~l~~q~~~~~~~ 90 (411)
||.+++.-++.. ...+++++..++|+|||++++.++..+ . +++||+||. .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 799999887533 345788999999999999999887632 1 259999998 789999999999
Q ss_pred HhCCCCCcEEEEcCch-----hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHH
Q 015196 91 WSTIQDDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~-----~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~ 163 (411)
++......+..+.+.. ........+++++||+.+..... ....+.+...++++||+||+|.+.+. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~-----~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARK-----KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TS-----THTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccc-----cccccccccccceeEEEeccccccccccccc
Confidence 9744345677777655 12234568999999998871110 11224454567999999999999754 333
Q ss_pred HHHHhhccccEEEEeeecccCchh
Q 015196 164 KVISLTKSHCKLGLTATLVREDER 187 (411)
Q Consensus 164 ~~~~~~~~~~~i~lSATp~~~~~~ 187 (411)
..+..+...++++|||||..+...
T Consensus 155 ~~l~~l~~~~~~lLSgTP~~n~~~ 178 (299)
T PF00176_consen 155 KALRKLRARYRWLLSGTPIQNSLE 178 (299)
T ss_dssp HHHHCCCECEEEEE-SS-SSSGSH
T ss_pred ccccccccceEEeecccccccccc
Confidence 344556778899999999977543
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.69 E-value=3e-16 Score=134.15 Aligned_cols=152 Identities=24% Similarity=0.320 Sum_probs=107.4
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCC-
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD- 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~- 96 (411)
..+++++|.+++..+.... ..+++.+|||+|||.+++..+... ..++++++|+..++.||..++...+....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL--RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 4589999999999998762 389999999999999776665432 25799999999999999999998764332
Q ss_pred CcEEEEcCchh----hhhcCCC-cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-h---hHHHHHH
Q 015196 97 DQICRFTSDSK----ERFRGNA-GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H---MFRKVIS 167 (411)
Q Consensus 97 ~~v~~~~~~~~----~~~~~~~-~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~---~~~~~~~ 167 (411)
.....+.+... ....... +++++|++.+........ .....++++|+||+|++.. . .+..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--------LELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--------cCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 23334444321 1122333 999999987755321110 2234678999999999986 2 4444444
Q ss_pred hh-ccccEEEEeeecccC
Q 015196 168 LT-KSHCKLGLTATLVRE 184 (411)
Q Consensus 168 ~~-~~~~~i~lSATp~~~ 184 (411)
.+ ...+++++||||...
T Consensus 156 ~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 156 LLPKNVQLLLLSATPPEE 173 (201)
T ss_pred hCCccceEEEEecCCchh
Confidence 44 456899999999743
No 135
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.68 E-value=6.3e-14 Score=139.95 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=101.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC-----CceEEEEcChhhHHHHHHHHH---------HHhCCCCCcEEEEcCch----
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFK---------LWSTIQDDQICRFTSDS---- 106 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~-----~~~lil~P~~~l~~q~~~~~~---------~~~~~~~~~v~~~~~~~---- 106 (411)
++.+.|+||+|||++++..+.++. .++||+||+.++.+.+...+. ...+.....+.++.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 678899999999999998886653 479999999998777654332 21121122334454322
Q ss_pred -----h----hhhc------CCCcEEEEecceecccCC-CCh-------hhHHHHHHHhcCCccEEEEecCCCCCc--hh
Q 015196 107 -----K----ERFR------GNAGVVVTTYNMVAFGGK-RSE-------ESEKIIEEIRNREWGLLLMDEVHVVPA--HM 161 (411)
Q Consensus 107 -----~----~~~~------~~~~I~v~t~~~l~~~~~-~~~-------~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~ 161 (411)
. .... ....|.|+|.++|.+... +.. .....++.+...+ -+||+||.|++.. ..
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~-PivIiDEPh~~~~~~k~ 219 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATR-PVVIIDEPHRFPRDNKF 219 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCC-CEEEEECCCCCCcchHH
Confidence 1 0011 136899999999976432 111 0112334443333 3899999999965 46
Q ss_pred HHHHHHhhccccEEEEeeecccCc-----hhhhhhhhhhcccchhhchHHHHhcCCccccee
Q 015196 162 FRKVISLTKSHCKLGLTATLVRED-----ERITDLNFLIGPKLYEANWLDLVKGGFIANVQC 218 (411)
Q Consensus 162 ~~~~~~~~~~~~~i~lSATp~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (411)
|. .+..+.+..++.+|||-.... +..... .+ -..+|..+..+..+++.+..+.+
T Consensus 220 ~~-~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~-d~-~NlvY~LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 220 YQ-AIEALKPQMIIRFGATFPDITEGKGKNKCTRK-DY-YNLQFDLNAVDSFNDGLVKGVDI 278 (986)
T ss_pred HH-HHHhcCcccEEEEeeecCCccccccccccccc-cc-cCceeecCHHHHHHhCCcceEEE
Confidence 65 446667778888999986410 000000 01 13355566666666666655444
No 136
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=2.5e-16 Score=126.75 Aligned_cols=128 Identities=22% Similarity=0.249 Sum_probs=92.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhh-----hcCCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-----FRGNA 114 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 114 (411)
++++.+|||+|||.+++..+... .++++|++|+..+..|+.+.+..+... ...+..+.+..... .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 67899999999999988886544 379999999999999999999887643 33455554433221 24578
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH-----HHHhhccccEEEEeeec
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-----VISLTKSHCKLGLTATL 181 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~-----~~~~~~~~~~i~lSATp 181 (411)
+|+++|++.+........ .....++++|+||+|.+....+.. ........+++++||||
T Consensus 81 ~i~i~t~~~~~~~~~~~~--------~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLK--------LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCC--------cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999997754321110 112467899999999999875544 22333556899999998
No 137
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=2.5e-14 Score=141.80 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
|..++...+.... ..+.++||||++++.++.+++.|. ...+|+ ...+|+..+..|..+ ...|+|||+++++
T Consensus 583 K~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~VtIATNMAGR 658 (1025)
T PRK12900 583 KYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeEEEeccCcCC
Confidence 3344444443222 358899999999999999999993 345665 566889999999997 9999999999999
Q ss_pred ccCcc---CccE-----EEEecCCCCCHHHHHHHhhcccccCC
Q 015196 327 SIDIP---EANV-----IIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 327 Gid~~---~~~~-----vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+|++ .+.. ||.. ....|...+.|++||+||.|.
T Consensus 659 GtDIkl~~~V~~vGGL~VIgt-erhes~Rid~Ql~GRtGRqGd 700 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGS-ERHESRRIDRQLRGRAGRQGD 700 (1025)
T ss_pred CCCcCCccchhhhCCceeeCC-CCCchHHHHHHHhhhhhcCCC
Confidence 99999 4432 2444 334688899999999999996
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=4.9e-14 Score=135.86 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=87.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
+.+++.|.-....++.+ -+..+.||.|||++|.+++ +..++.+-+++|+-.|+.+-...+..++......++
T Consensus 77 ~r~ydvQlig~l~Ll~G-----~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg 151 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG-----DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVG 151 (764)
T ss_pred CCcchHHHHHHHHHhCC-----CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 45666677666666543 4779999999999987765 345789999999999999877666655544344677
Q ss_pred EEcCchhhhh---cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 101 RFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 101 ~~~~~~~~~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.+.+...... .=.++|+.+|...|....-|.+-.... +..-...+.+.|+||++.+.
T Consensus 152 ~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 152 WITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV-ADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh-HhhcCCccceeeecchhhhe
Confidence 7766543211 114789999998876654333221111 12223567899999999875
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=4.3e-14 Score=139.53 Aligned_cols=129 Identities=19% Similarity=0.140 Sum_probs=85.3
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEE
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~ 102 (411)
++||-.+.+-.+.-+. .-+..+.||.|||++|..++ +..++.+-+++|+..|+.+-...+..++......++.+
T Consensus 81 m~~ydVQliGg~~Lh~---G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i 157 (913)
T PRK13103 81 MRHFDVQLIGGMTLHE---GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIV 157 (913)
T ss_pred CCcchhHHHhhhHhcc---CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4555444555554443 56889999999999987765 34578999999999999987777777665444578877
Q ss_pred cCchhhhh---cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 103 TSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 103 ~~~~~~~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.+...... .=.++|+++|...|....-+.+-....-+.+ ...++++|+||+|.+.
T Consensus 158 ~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~v-qr~l~~aIVDEvDsiL 215 (913)
T PRK13103 158 TPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKF-QRELNFAVIDEVDSIL 215 (913)
T ss_pred CCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhc-ccccceeEechhhhee
Confidence 76543211 1138999999998743321211111111112 3678899999999986
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.62 E-value=9.5e-14 Score=136.07 Aligned_cols=261 Identities=18% Similarity=0.213 Sum_probs=166.7
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH---HHhcCCceEEEEcChhhHHHHHHHHHHHhCCCC-Cc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~---~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~ 98 (411)
.+.|+..|+-....++.+. ++.+.||||.|||...+.. .+.-++++++++||..|+.|..+.+.++..... ..
T Consensus 80 G~~~ws~QR~WakR~~rg~---SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGK---SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred CCCchHHHHHHHHHHHcCC---ceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 4589999999999999886 9999999999999764333 455668999999999999999999998853221 12
Q ss_pred EEE-EcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--h-----
Q 015196 99 ICR-FTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--M----- 161 (411)
Q Consensus 99 v~~-~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~----- 161 (411)
+.. +++.... ...++.+|+|+|.+-+. +..+.+.+.+|++|++|.++.+.-. .
T Consensus 157 ~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~----------k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 157 VLVVYHSALPTKEKEEALERIESGDFDILITTSQFLS----------KRFEELSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred eeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHH----------hhHHHhcccCCCEEEEccHHHHHhccccHHHHH
Confidence 222 4443221 12467899999998664 3456776789999999999986521 0
Q ss_pred -------------------------------HHHHHH---------hhccccEEEEeeecccCchhhhhhhhhhcccchh
Q 015196 162 -------------------------------FRKVIS---------LTKSHCKLGLTATLVREDERITDLNFLIGPKLYE 201 (411)
Q Consensus 162 -------------------------------~~~~~~---------~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~ 201 (411)
++..+. ..+...++..|||-.....+..-...+++-.+-.
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~ 306 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS 306 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc
Confidence 011111 1122356778888765544332222232211100
Q ss_pred hchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecC---h
Q 015196 202 ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADN---L 278 (411)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~---~ 278 (411)
. .-++.+ +...+... .-......|++.. |.-.|||++. .
T Consensus 307 -~------~~~LRN--IvD~y~~~-------------------------~~~e~~~elvk~l----G~GgLIfV~~d~G~ 348 (1187)
T COG1110 307 -G------GEGLRN--IVDIYVES-------------------------ESLEKVVELVKKL----GDGGLIFVPIDYGR 348 (1187)
T ss_pred -c------chhhhh--eeeeeccC-------------------------ccHHHHHHHHHHh----CCCeEEEEEcHHhH
Confidence 0 001111 11111110 1112333344444 5568999998 8
Q ss_pred hHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEee----ccCccccCccCcc-EEEEec
Q 015196 279 FALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVGDNSIDIPEAN-VIIQIS 340 (411)
Q Consensus 279 ~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t----~~~~~Gid~~~~~-~vi~~~ 340 (411)
+.++++++.|. +..+|. ...+.++.|..| ++++||.+ +.+-+|+|+|..- .+|++.
T Consensus 349 e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYaIF~G 414 (1187)
T COG1110 349 EKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYG 414 (1187)
T ss_pred HHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccC-ceeEEEEecccccceeecCCchhheeEEEEec
Confidence 99999999983 334443 336678999998 99999983 6789999999654 566653
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=5.7e-15 Score=117.27 Aligned_cols=106 Identities=28% Similarity=0.393 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccc
Q 015196 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (411)
Q Consensus 253 ~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~G 327 (411)
...+..++.... ..+.++||||++.+.++.+.+.|. +..+||.+++.+|..+++.|+++ ...+|++|+++++|
T Consensus 14 ~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t~~~~~G 91 (131)
T cd00079 14 LEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEcChhhcC
Confidence 334444443332 247799999999999999999983 46789999999999999999998 89999999999999
Q ss_pred cCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 328 id~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|.+++++++.++ .+...+.|++||++|.|+
T Consensus 92 ~d~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 92 IDLPNVSVVINYDLP-WSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred cChhhCCEEEEeCCC-CCHHHheecccccccCCC
Confidence 999999999988555 599999999999999995
No 142
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.61 E-value=5.6e-14 Score=139.20 Aligned_cols=306 Identities=14% Similarity=0.107 Sum_probs=177.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC-C
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-D 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-~ 96 (411)
..-+.++.+.++++-.+. .+++.+.||+|||...-..+... ..++++--|++--+-...++...--+.. .
T Consensus 172 LPa~~~r~~Il~~i~~~q---VvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQ---VVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred CccHHHHHHHHHHHHhCc---eEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 344666777777776665 88899999999999876665432 3466777788644444444433221211 1
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHHHHHhhc
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTK 170 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~~~~~~~ 170 (411)
..|+.--.-... ......+.+||...|...... .-.-.....||+||+|+-.-+ ..+.++..-+
T Consensus 249 ~~VGYqvrl~~~-~s~~t~L~fcTtGvLLr~L~~---------~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLESK-RSRETRLLFCTTGVLLRRLQS---------DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeecc-cCCceeEEEecHHHHHHHhcc---------CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 233322111111 223478999999877543211 001246678999999997654 2233333335
Q ss_pred cccEEEEeeecccCchhhhhhhhhhcccc-----------hhhchHHHHhc-CCcc-cceeEEEEcCCCHHHHHHHHhhh
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIGPKL-----------YEANWLDLVKG-GFIA-NVQCAEVWCPMTKEFFSEYLKKE 237 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 237 (411)
..++|+||||... +....||+... ....+.+.... ++.. +.... .....+ ..
T Consensus 319 ~LkvILMSAT~da-----e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~-~~~~~~------~~--- 383 (924)
T KOG0920|consen 319 DLKVILMSATLDA-----ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR-SGPERS------QL--- 383 (924)
T ss_pred CceEEEeeeecch-----HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc-cccccC------cc---
Confidence 5589999999962 22333444211 11111222111 0000 00000 000000 00
Q ss_pred chhhhhhhhhcCC-CcHHHHHHHHHHhh-hcCCCeEEEEecChhHHHHHHHHhC------------CceeeCCCCHHHHH
Q 015196 238 NSKKKQALYVMNP-NKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR------------KPMIYGATSHVERT 303 (411)
Q Consensus 238 ~~~~~~~~~~~~~-~k~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~------------~~~i~g~~~~~~r~ 303 (411)
... .+....+ .....+..++.+.- ......+|||.+..+++..+.+.|. +..+|+.++..++.
T Consensus 384 --~~~-~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~ 460 (924)
T KOG0920|consen 384 --RLA-RLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQ 460 (924)
T ss_pred --ccc-cchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHH
Confidence 000 0111111 23345555554432 2335689999999999999888883 23468999999999
Q ss_pred HHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe-----------------cCCCCCHHHHHHHhhcccccCC
Q 015196 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI-----------------SSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 304 ~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~-----------------~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+.+..-.| .-+||++|+++++++.++++-.||-. ...|-|...-.||.||+||..+
T Consensus 461 ~VF~~pp~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~ 534 (924)
T KOG0920|consen 461 AVFKRPPKG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP 534 (924)
T ss_pred HhcCCCCCC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC
Confidence 887777776 78899999999999999999888754 1112355667999999999994
No 143
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=3.9e-14 Score=132.76 Aligned_cols=286 Identities=17% Similarity=0.168 Sum_probs=168.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcChhhHHHHHHHHHHHhCCCC-CcEEEEcCchhhhhcCCCcEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQD-DQICRFTSDSKERFRGNAGVVVT 119 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~I~v~ 119 (411)
-+++.+.||||||......+..-+ +-+-+--|++..+-....+..+-.+..- ..||. +-...+.......|-++
T Consensus 373 vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY-sIRFEdvT~~~T~Ikym 451 (1042)
T KOG0924|consen 373 VVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY-SIRFEDVTSEDTKIKYM 451 (1042)
T ss_pred EEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce-EEEeeecCCCceeEEEe
Confidence 788899999999998777665443 3344555888777666666665443321 12221 00111111223556677
Q ss_pred ecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHHHHHhhccccEEEEeeecccCchhhhhhhh
Q 015196 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATLVREDERITDLNF 193 (411)
Q Consensus 120 t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~ 193 (411)
|-..|..- .+..-.-.++.+||+||||+-.-+ ....++..-...++|..|||.. ...+.+
T Consensus 452 TDGiLLrE---------sL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~-----a~kf~n 517 (1042)
T KOG0924|consen 452 TDGILLRE---------SLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD-----AQKFSN 517 (1042)
T ss_pred ccchHHHH---------HhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc-----HHHHHH
Confidence 77655432 111111357789999999996633 2233333334558899999985 223445
Q ss_pred hhccc-chhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEE
Q 015196 194 LIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 272 (411)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~i 272 (411)
+|+.. .+. -.|-..|+... ........|+. .++...+..|......-++
T Consensus 518 fFgn~p~f~-------IpGRTyPV~~~-----~~k~p~eDYVe------------------aavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 518 FFGNCPQFT-------IPGRTYPVEIM-----YTKTPVEDYVE------------------AAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred HhCCCceee-------ecCCccceEEE-----eccCchHHHHH------------------HHHhhheEeeccCCCCCEE
Confidence 66622 111 12333333321 22223444442 2344444444433445678
Q ss_pred EEecChhHH----HHHHHHh-----------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEE
Q 015196 273 VFADNLFAL----TEYAMKL-----------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVII 337 (411)
Q Consensus 273 vf~~~~~~~----~~l~~~l-----------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi 337 (411)
||....+.+ ..+...| .+--+++.++...+.++++.-..+ --++||+|+++++.+.+|++.+||
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-vRK~IvATNIAETSLTi~gI~yVI 646 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-VRKCIVATNIAETSLTIPGIRYVI 646 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-ceeEEEeccchhhceeecceEEEE
Confidence 887765543 3333333 133477889988888887766665 778999999999999999999988
Q ss_pred Ee--------cCCC---------CCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHH
Q 015196 338 QI--------SSHA---------GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (411)
Q Consensus 338 ~~--------~~~~---------~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~ 390 (411)
-. .+.. -|...-.||.||+||.++ ...|.++.+++...+
T Consensus 647 D~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p--------------G~cYRlYTe~ay~~e 702 (1042)
T KOG0924|consen 647 DTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP--------------GTCYRLYTEDAYKNE 702 (1042)
T ss_pred ecCceeeeecccccccceeEEEechhccchhhccccCCCCC--------------cceeeehhhhHHHhh
Confidence 53 1110 134556899999999995 556777776655533
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.60 E-value=3.1e-13 Score=137.22 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=52.3
Q ss_pred CCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc--CCceEEEEcChhhHHHHH-HHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWA-FQFK 89 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil~P~~~l~~q~~-~~~~ 89 (411)
..++.|+-|.+...++... ......++.|+||+|||+.++.++... +.+++|++|+++|.+|.. .++.
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHH
Confidence 3589999999977666332 112578899999999999988875443 579999999999999984 4444
No 145
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=4.2e-14 Score=132.21 Aligned_cols=290 Identities=17% Similarity=0.164 Sum_probs=171.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCC-C
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-D 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~ 97 (411)
...++|-.+.+.++-.+. -.++.+.||||||...-..+.+. ++++-+--|++..+.....+..+-.|..- .
T Consensus 264 LPVy~ykdell~av~e~Q---VLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQ---VLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred CCchhhHHHHHHHHHhCc---EEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 445667777777766665 78889999999998755555443 34577777988777776666655433221 1
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHH--HHHHhh-cc
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFR--KVISLT-KS 171 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~--~~~~~~-~~ 171 (411)
.||. +-.-.+......-+-.+|-.+|.. .++....-..+++||+||||.-.-. -+. +-+..+ +.
T Consensus 341 eVGY-sIRFEdcTSekTvlKYMTDGmLlR---------EfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rpd 410 (902)
T KOG0923|consen 341 EVGY-SIRFEDCTSEKTVLKYMTDGMLLR---------EFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPD 410 (902)
T ss_pred ccce-EEEeccccCcceeeeeecchhHHH---------HHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCc
Confidence 1211 001111112234556677776643 3444444457789999999985532 111 112222 33
Q ss_pred ccEEEEeeecccCchhhhhhhhhhcccc-hhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCC
Q 015196 172 HCKLGLTATLVREDERITDLNFLIGPKL-YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (411)
.+++..|||..- .....+|+... +..+ |--.|+. +.....+ -..|+.
T Consensus 411 LKllIsSAT~DA-----ekFS~fFDdapIF~iP-------GRRyPVd---i~Yt~~P--EAdYld--------------- 458 (902)
T KOG0923|consen 411 LKLLISSATMDA-----EKFSAFFDDAPIFRIP-------GRRYPVD---IFYTKAP--EADYLD--------------- 458 (902)
T ss_pred ceEEeeccccCH-----HHHHHhccCCcEEecc-------Cccccee---eecccCC--chhHHH---------------
Confidence 478999999852 22333444221 1100 1111111 1111111 112331
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------C-------CceeeCCCCHHHHHHHHHHhcCCCCee
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------R-------KPMIYGATSHVERTKILQAFKCSRDLN 316 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~-------~~~i~g~~~~~~r~~~~~~f~~~~~~~ 316 (411)
.++..+++.|..++..-+|||.-..++++...+.| + +--+++.++.+.+..+++---.| .-+
T Consensus 459 ---Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g-aRK 534 (902)
T KOG0923|consen 459 ---AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG-ARK 534 (902)
T ss_pred ---HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-cee
Confidence 34556666666566677899988777766555554 2 23478899999888886555554 678
Q ss_pred EEEeeccCccccCccCccEEEEe--------cCC---------CCCHHHHHHHhhcccccCCC
Q 015196 317 TIFLSKVGDNSIDIPEANVIIQI--------SSH---------AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 317 vlv~t~~~~~Gid~~~~~~vi~~--------~~~---------~~s~~~~~Q~~GR~~R~~~~ 362 (411)
|+++|+++.+.+.++++..||-- .+. +-|..+-.||.||+||.||+
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG 597 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG 597 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC
Confidence 99999999999999999988742 011 01355669999999999964
No 146
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.59 E-value=5.3e-14 Score=129.13 Aligned_cols=252 Identities=19% Similarity=0.157 Sum_probs=152.5
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhc---CCCcEEEEeccee
Q 015196 48 IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTTYNMV 124 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~I~v~t~~~l 124 (411)
=++||.||||+-|+.-....+ +-++.-|.+.|+.+..+++... |+ .+..++|.+..... +.+..+-||.+|.
T Consensus 196 H~GPTNSGKTy~ALqrl~~ak-sGvycGPLrLLA~EV~~r~na~-gi---pCdL~TGeE~~~~~~~~~~a~hvScTVEM~ 270 (700)
T KOG0953|consen 196 HVGPTNSGKTYRALQRLKSAK-SGVYCGPLRLLAHEVYDRLNAL-GI---PCDLLTGEERRFVLDNGNPAQHVSCTVEMV 270 (700)
T ss_pred EeCCCCCchhHHHHHHHhhhc-cceecchHHHHHHHHHHHhhhc-CC---CccccccceeeecCCCCCcccceEEEEEEe
Confidence 369999999999887666554 7788899999999999988774 44 46677776554222 2467888999988
Q ss_pred cccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhch
Q 015196 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~ 204 (411)
.. +..+++.|+||++.+.+++..-.+... .+|+-|--. .+||....-.-.
T Consensus 271 sv----------------~~~yeVAViDEIQmm~Dp~RGwAWTrA----LLGl~AdEi----------HLCGepsvldlV 320 (700)
T KOG0953|consen 271 SV----------------NTPYEVAVIDEIQMMRDPSRGWAWTRA----LLGLAADEI----------HLCGEPSVLDLV 320 (700)
T ss_pred ec----------------CCceEEEEehhHHhhcCcccchHHHHH----HHhhhhhhh----------hccCCchHHHHH
Confidence 54 357789999999999987332222211 233222111 233322110000
Q ss_pred HHHHh-cCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHH
Q 015196 205 LDLVK-GGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283 (411)
Q Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 283 (411)
.++.+ -|--..+..++-..++..+. .++..+-+. .+|+.++.|.. +.+-.
T Consensus 321 ~~i~k~TGd~vev~~YeRl~pL~v~~------------------------~~~~sl~nl---k~GDCvV~FSk--k~I~~ 371 (700)
T KOG0953|consen 321 RKILKMTGDDVEVREYERLSPLVVEE------------------------TALGSLSNL---KPGDCVVAFSK--KDIFT 371 (700)
T ss_pred HHHHhhcCCeeEEEeecccCcceehh------------------------hhhhhhccC---CCCCeEEEeeh--hhHHH
Confidence 01100 00000111111111110000 111111111 34666666654 33333
Q ss_pred HHHHh------CCceeeCCCCHHHHHHHHHHhcCC-CCeeEEEeeccCccccCccCccEEEEecCC-C-------CCHHH
Q 015196 284 YAMKL------RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSH-A-------GSRRQ 348 (411)
Q Consensus 284 l~~~l------~~~~i~g~~~~~~r~~~~~~f~~~-~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~-~-------~s~~~ 348 (411)
+...+ ...+|+|..+++.|...-..|++. ++.+|||+|+++++|+|+. ++.||+..-- + -+.+.
T Consensus 372 ~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 372 VKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred HHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHH
Confidence 33333 367899999999999999999995 5899999999999999995 7776665110 0 13567
Q ss_pred HHHHhhcccccCCCcc
Q 015196 349 EAQRLGRILRAKGKLE 364 (411)
Q Consensus 349 ~~Q~~GR~~R~~~~k~ 364 (411)
..|..||+||.+.+..
T Consensus 451 ikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYP 466 (700)
T ss_pred HHHHhhcccccccCCc
Confidence 8999999999987544
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.56 E-value=6.4e-15 Score=105.31 Aligned_cols=70 Identities=27% Similarity=0.440 Sum_probs=64.9
Q ss_pred CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccC
Q 015196 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 289 ~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
.+..+||+++..+|..+++.|+++ ...|||+|+++++|+|+|.+++|+++.++ .|...+.|++||++|.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLPDASHVIFYDPP-WSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTSTTESEEEESSSE-SSHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhcc-CceEEEeeccccccccccccccccccccC-CCHHHHHHHhhcCCCCC
Confidence 456789999999999999999998 88999999999999999999999998655 59999999999999986
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=1.2e-12 Score=130.64 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=64.6
Q ss_pred EEEecChhHHHHHHHHh-------C----CceeeCCCCHHHHHHHHHHh----------------------cCC---CCe
Q 015196 272 IVFADNLFALTEYAMKL-------R----KPMIYGATSHVERTKILQAF----------------------KCS---RDL 315 (411)
Q Consensus 272 ivf~~~~~~~~~l~~~l-------~----~~~i~g~~~~~~r~~~~~~f----------------------~~~---~~~ 315 (411)
+|-..+++.+-.+++.| + +.++|+...-..|..+.+.. +++ ...
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 77788888877777776 1 33568877555555544332 121 256
Q ss_pred eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 015196 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (411)
Q Consensus 316 ~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~ 364 (411)
.|+|+|++.+.|+|+ +.+.+|.. .. +...++|+.||+.|.+....
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~~-~~--~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIAD-PS--SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeeec-cC--cHHHHHHHhhcccccccCCC
Confidence 799999999999999 58888885 33 68889999999999997543
No 149
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=2.1e-12 Score=126.58 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHH---HHHHHHHHHhCCCCCcE
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~---q~~~~~~~~~~~~~~~v 99 (411)
+|||=.+.+-.++-+. .-+..+.||=|||++|.+++. -.++.|-|++.+-.|+. +|+..+-+|+|+ .+
T Consensus 77 ~r~ydVQliGglvLh~---G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGL---sv 150 (925)
T PRK12903 77 KRPYDVQIIGGIILDL---GSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGL---SV 150 (925)
T ss_pred CCcCchHHHHHHHHhc---CCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCC---ce
Confidence 4444444444444333 458899999999999887652 34678888888888875 588888898887 46
Q ss_pred EEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 100 CRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 100 ~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
++..+... ..+ .++|+.+|...|....-|.+-.... +..-...+.+.|+||++.+.
T Consensus 151 G~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~-~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 151 GINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSK-EEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccH-HHhcCcccceeeeccchhee
Confidence 66554322 222 3789999998876543222111111 11223567789999999875
No 150
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=2.9e-13 Score=125.41 Aligned_cols=169 Identities=17% Similarity=0.238 Sum_probs=111.0
Q ss_pred EEcCCCCCHHHHHHHHHHhcC----CceEEEEcChhhHHHHHHHHHH-----Hh-----CCCCCcEEEEcCchhhhhcCC
Q 015196 48 IVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKL-----WS-----TIQDDQICRFTSDSKERFRGN 113 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~~l~~q~~~~~~~-----~~-----~~~~~~v~~~~~~~~~~~~~~ 113 (411)
+.|+||+|||++|+.+|.++. +.+|++|.+..+++.....|.. |+ .+.+..+.+-.-....+.+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 568999999999999987663 5899999998888776655431 11 111222222111222223445
Q ss_pred CcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-------------hHHHHHHh----hccccEEE
Q 015196 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------------MFRKVISL----TKSHCKLG 176 (411)
Q Consensus 114 ~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-------------~~~~~~~~----~~~~~~i~ 176 (411)
..|+++|.|.|.....+.+.....++.+...+ -+.+-||+||+.+. .|...... -+...++.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~k-lvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQK-LVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCc-eEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 78999999999887666555555666664333 36789999999864 34433222 13336777
Q ss_pred EeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEE
Q 015196 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE 220 (411)
Q Consensus 177 lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
+|||-..... ....+-+.+++.+.+.+..++||...+....
T Consensus 161 f~at~~k~k~---v~~ky~dkiv~~y~lk~f~e~gytk~i~~~s 201 (812)
T COG3421 161 FSATIPKEKS---VEDKYEDKIVVTYTLKQFSEDGYTKNIYSLS 201 (812)
T ss_pred hhhcCCcccc---HHHHhccceEEeeeHHHhhhhcchhhhhhhh
Confidence 8888764333 2445777788899999999999988876433
No 151
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.7e-13 Score=127.15 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC---------CceEEEEcChhhHHHHHHHHHHHhCCCCCcEE--
Q 015196 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---------KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC-- 100 (411)
Q Consensus 32 ~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~---------~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~-- 100 (411)
+...++-.+. -+++++.||||||...-..+.+.+ +-+=|--|++..+-.+..+...-++.....|+
T Consensus 263 ~IMEaIn~n~---vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENP---VVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCC---eEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3344444443 788999999999987554444332 24556668887666666655544444333343
Q ss_pred -EEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHHH---------
Q 015196 101 -RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRK--------- 164 (411)
Q Consensus 101 -~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~~--------- 164 (411)
.+.+.. .....|-|+|-..|.. .+-..|.-.++..||+||||.-+-. ...+
T Consensus 340 IRfd~ti----~e~T~IkFMTDGVLLr---------Ei~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 340 IRFDGTI----GEDTSIKFMTDGVLLR---------EIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEecccc----CCCceeEEecchHHHH---------HHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 233332 3357899999987754 3444555578999999999996632 1111
Q ss_pred -HHHhhccccEEEEeeecccCc
Q 015196 165 -VISLTKSHCKLGLTATLVRED 185 (411)
Q Consensus 165 -~~~~~~~~~~i~lSATp~~~~ 185 (411)
--..++..+.|.||||+.-.+
T Consensus 407 ke~~~~kpLKLIIMSATLRVsD 428 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSD 428 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecc
Confidence 111223558899999996443
No 152
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.47 E-value=1.4e-11 Score=127.48 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccc
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~G 327 (411)
+...|.+... ..+.+++|+..+.+.++.+.+.+. ..++.-+.+...|..+++.|+.+ +-.||++|++..||
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLlG~~sFwEG 817 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEEecCcccCc
Confidence 3444444443 345689999999999998888873 22333333334678899999986 77899999999999
Q ss_pred cCccCc--cEEEEecCCCC---C--------------------------HHHHHHHhhcccccCC
Q 015196 328 IDIPEA--NVIIQISSHAG---S--------------------------RRQEAQRLGRILRAKG 361 (411)
Q Consensus 328 id~~~~--~~vi~~~~~~~---s--------------------------~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+- .+||+..-|+. + ...+.|.+||..|...
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~ 882 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET 882 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC
Confidence 999976 45666532222 2 1123899999999885
No 153
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.46 E-value=7.5e-13 Score=129.50 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=93.7
Q ss_pred CeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEe-eccCccccCccCccEEEEecCC
Q 015196 269 DKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSH 342 (411)
Q Consensus 269 ~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~-t~~~~~Gid~~~~~~vi~~~~~ 342 (411)
.+++||++.+.-+..+.-.+. .....|.++...|...+..|.+++..+|+.. ..+++.|+|+-.+++|++.++|
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 389999999887777665552 2345688899999999999998767777666 6999999999999999987555
Q ss_pred CCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 343 ~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
+|+....|.+.|++|.|+ .+.+.++.++-.+|.|+++.
T Consensus 620 -wnp~~eeQaidR~hrigq-----------~k~v~v~r~~i~dtveer~l 657 (674)
T KOG1001|consen 620 -WNPAVEEQAIDRAHRIGQ-----------TKPVKVSRFIIKDTVEERIL 657 (674)
T ss_pred -cChHHHHHHHHHHHHhcc-----------cceeeeeeehhhhccHHHHH
Confidence 599999999999999995 45699999999999998887
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.45 E-value=2.9e-11 Score=119.26 Aligned_cols=122 Identities=16% Similarity=0.062 Sum_probs=88.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhh---------hhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE---------RFRG 112 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~ 112 (411)
+.++.+.+|||||.+.+.++. ..++.+|+++|...|..|+...|...++ ...+.++++.... ...+
T Consensus 162 ~~i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 162 RAVWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 345555579999999888874 4478999999999999999999999875 2457788875442 1246
Q ss_pred CCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hH--H---HHHHhhccccEEEEeeecc
Q 015196 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF--R---KVISLTKSHCKLGLTATLV 182 (411)
Q Consensus 113 ~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~--~---~~~~~~~~~~~i~lSATp~ 182 (411)
..+|+|+|...+..- -.+.++||+||-|.-+-. .| + ..........+|+.||||.
T Consensus 240 ~~~IViGtRSAvFaP---------------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 240 QARVVVGTRSAVFAP---------------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCcEEEEcceeEEec---------------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 689999999977542 267799999999987632 11 1 1222234457888899997
Q ss_pred c
Q 015196 183 R 183 (411)
Q Consensus 183 ~ 183 (411)
-
T Consensus 305 l 305 (665)
T PRK14873 305 A 305 (665)
T ss_pred H
Confidence 3
No 155
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.40 E-value=1.3e-11 Score=119.13 Aligned_cols=139 Identities=10% Similarity=0.076 Sum_probs=84.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcC-----CceEEEEcChhhHHHH---HHHHHHHh-----CCCCCcEEEEcCc-hhh
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQW---AFQFKLWS-----TIQDDQICRFTSD-SKE 108 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~-----~~~lil~P~~~l~~q~---~~~~~~~~-----~~~~~~v~~~~~~-~~~ 108 (411)
+.++-+.|.||+|||++.+..+..+. .+++||||+.++-+-. .....+++ +...-...++... ...
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 34677899999999999999887664 3899999999886542 22222322 2111222223221 111
Q ss_pred --hhcCCCcEEEEecceeccc---CCC--------Ch---hhHHHHHHHhcCCccEEEEecCCCCCc--hhHHHHHHhhc
Q 015196 109 --RFRGNAGVVVTTYNMVAFG---GKR--------SE---ESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTK 170 (411)
Q Consensus 109 --~~~~~~~I~v~t~~~l~~~---~~~--------~~---~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~~~~~~~~~~ 170 (411)
.-.+...|++.+.+.+... ... .+ ...+..+.+...++ +||+||-|++.+ ..|. .+..+.
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~~k~~~-~i~~l~ 231 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGDDKTYG-AIKQLN 231 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccchHHHH-HHHhhC
Confidence 1123467788887777554 110 00 01222333333333 899999999998 4555 455567
Q ss_pred cccEEEEeeeccc
Q 015196 171 SHCKLGLTATLVR 183 (411)
Q Consensus 171 ~~~~i~lSATp~~ 183 (411)
+..++-++||...
T Consensus 232 pl~ilRfgATfkd 244 (985)
T COG3587 232 PLLILRFGATFKD 244 (985)
T ss_pred ceEEEEecccchh
Confidence 7788999999864
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=1.2e-12 Score=94.59 Aligned_cols=70 Identities=26% Similarity=0.413 Sum_probs=63.9
Q ss_pred CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccC
Q 015196 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 289 ~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
.+..+||.++..+|..+++.|.++ ...+||+|+++++|+|+|.++.++++.++ .+...+.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gi~~~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLPGVDLVIIYDLP-WSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC-CCeEEEECChhhCCcChhcCCEEEEeCCC-CCHHHHHHhhcccccCC
Confidence 456789999999999999999998 88999999999999999999999998555 59999999999999975
No 157
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.39 E-value=8.9e-11 Score=115.95 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=80.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHH---HHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q---~~~~~~~~~~~~~~ 97 (411)
+.++|.|.-. .++-+. +-+..+.||-|||+++..++. ..++.|-|++++..|+.+ |+..+-+|+|+
T Consensus 75 ~r~ydvQlig--~l~L~~---G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL--- 146 (870)
T CHL00122 75 LRHFDVQLIG--GLVLND---GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL--- 146 (870)
T ss_pred CCCCchHhhh--hHhhcC---CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCC---
Confidence 3444445444 443333 568899999999999877652 347889999999999875 66677777776
Q ss_pred cEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.+++..++... .+ .++|+.+|...|....-|.+-........ ...+.+.|+||++.+.
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v-~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVV-QRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhh-ccccceeeeecchhhe
Confidence 56666543321 22 36899999987765433322111111122 3567899999999976
No 158
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.6e-10 Score=114.07 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=83.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHH---HHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~---q~~~~~~~~~~~~~~~ 98 (411)
-++||-.+.+-.+.-+. .-+..+.||-|||++|..++. ..++.|-|++++-.|+. +|+..+-+|+|+ .
T Consensus 83 G~r~ydVQliGgl~Lh~---G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL---t 156 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHE---GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL---S 156 (939)
T ss_pred CCCcchhHHHhhhhhcC---CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC---e
Confidence 34555555555554443 668899999999999877653 35688999999999986 477788888887 5
Q ss_pred EEEEcCchhhhh---cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 99 ICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 99 v~~~~~~~~~~~---~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
+++..++..... .=.++|+.+|...|....-|.+-.... ...-...+.+.|+||++.+.
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~-~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDI-SEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccc-cccccCccceEEEeccccee
Confidence 676655332211 124799999999886543332211111 11113567899999999876
No 159
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.37 E-value=4e-11 Score=119.79 Aligned_cols=288 Identities=13% Similarity=0.112 Sum_probs=169.0
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhC-CCCCcEEEEc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWST-IQDDQICRFT 103 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~-~~~~~v~~~~ 103 (411)
.|.|.+.+..+...+ +++++.+|+|+|||.+|..++.+.. .++++++|.-+++........+.++ .....+..++
T Consensus 1145 n~iqtqVf~~~y~~n--d~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTN--DNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred CCceEEEEeeeeccc--ceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 444555555554444 5899999999999999999887743 5899999998887654444433222 1112344455
Q ss_pred Cchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---------hHHHHHHhh-cc
Q 015196 104 SDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------MFRKVISLT-KS 171 (411)
Q Consensus 104 ~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---------~~~~~~~~~-~~ 171 (411)
|... ..+....+|+|+|++++... +. -...++.|+||.|.+++. +.+....++ +.
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l-----------q~--iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL-----------QS--IQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH-----------hh--hhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhh
Confidence 5322 12345689999999977432 22 256689999999999853 222222232 33
Q ss_pred ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCC--CHHHHHHHHhhhchhhhhhhhhcC
Q 015196 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEFFSEYLKKENSKKKQALYVMN 249 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 249 (411)
-+++++|....+..+. .......+++.+... -..|......-+.. .......+.
T Consensus 1290 ir~v~ls~~lana~d~----ig~s~~~v~Nf~p~~-----R~~Pl~i~i~~~~~~~~~~~~~am~--------------- 1345 (1674)
T KOG0951|consen 1290 IRVVALSSSLANARDL----IGASSSGVFNFSPSV-----RPVPLEIHIQSVDISHFESRMLAMT--------------- 1345 (1674)
T ss_pred eeEEEeehhhccchhh----ccccccceeecCccc-----CCCceeEEEEEeccchhHHHHHHhh---------------
Confidence 4778888777654443 111111122211110 01121111111111 111111111
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---------------------------CCceeeCCCCHHHH
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------RKPMIYGATSHVER 302 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l---------------------------~~~~i~g~~~~~~r 302 (411)
. .....+.+... .+.+.+||.++.+++..++..+ ...+-|.+++....
T Consensus 1346 ~---~~~~ai~~~a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~ 1420 (1674)
T KOG0951|consen 1346 K---PTYTAIVRHAG--NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQ 1420 (1674)
T ss_pred h---hHHHHHHHHhc--CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchH
Confidence 0 22333343332 4678999999998887776554 11222566777777
Q ss_pred HHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe----------cCCCCCHHHHHHHhhcccccCC
Q 015196 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI----------SSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 303 ~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~----------~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
..+...|..| .+.|+|.+.. ..|+-+..--++++- ..++ +...+.|++|++.|.++
T Consensus 1421 ~iv~~l~e~g-~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y-~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1421 EIVQQLFEAG-AIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDY-PIAELLQMVGLASGAGK 1486 (1674)
T ss_pred HHHHHHHhcC-cEEEEEEEcc-cccccccceEEEEecceeecccccccccC-chhHHHHHhhhhcCCcc
Confidence 7778889997 9999999766 888888644444432 1111 46678999999999773
No 160
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.35 E-value=5.2e-11 Score=120.20 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=53.5
Q ss_pred CCCCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
..+.+|+.|.+.+..+.... ....+++.||||+|||+.++.++.. .++++++.++++.+.+|...+..
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 35789999999998874321 1235899999999999998877543 45899999999999999877653
No 161
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=2.5e-11 Score=112.14 Aligned_cols=325 Identities=13% Similarity=0.022 Sum_probs=190.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhC-CC---
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQ--- 95 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~-~~--- 95 (411)
....+|.++++.+-++. .....-.|.+||+++.-.....+ ....++..|++++++...+-+.-... ++
T Consensus 286 ~~~~~~~~~~~~~~~G~---~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGR---ADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred chhhhhHHHHhhhhhcc---cccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 45778888888876654 66778889999998854433222 24788888888877654443321111 11
Q ss_pred CCcEEEEcCchh---h-hhcCCCcEEEEecceecccCC--CChhhHHHHHHHhcCCccEEEEecCCCCCch-------hH
Q 015196 96 DDQICRFTSDSK---E-RFRGNAGVVVTTYNMVAFGGK--RSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MF 162 (411)
Q Consensus 96 ~~~v~~~~~~~~---~-~~~~~~~I~v~t~~~l~~~~~--~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-------~~ 162 (411)
...+....+... . ....+.+++++++++.+...- ........+. ..+++.||+|.+..+ ..
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~------~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFE------ELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred cceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHH------HHHhcccceeeeecchhhHHHHHH
Confidence 112222222111 1 112346788888876654321 0001111111 137899999998864 33
Q ss_pred HHHHHhh------ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCC----HHHHHH
Q 015196 163 RKVISLT------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT----KEFFSE 232 (411)
Q Consensus 163 ~~~~~~~------~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 232 (411)
+++...+ .+..++-.++|....-....++..+-.-.+. ..+|.-.......++.+.- +.....
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li-------~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELV-------TIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE-------EecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 3333322 2235677777765433333333222111110 1233333333444443321 111111
Q ss_pred HHhhhchhhhhhhhhcCCCcHHHHHHHH-HHhhhcCCCeEEEEecChhHHHHHHHHhC-------------CceeeCCCC
Q 015196 233 YLKKENSKKKQALYVMNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATS 298 (411)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~k~~~~~~l~-~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-------------~~~i~g~~~ 298 (411)
++.....|+ +.. ..+-++|-||..+..|+.+....+ +.-+-|+-+
T Consensus 510 -------------------~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~ 568 (1034)
T KOG4150|consen 510 -------------------KVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYI 568 (1034)
T ss_pred -------------------HHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccc
Confidence 112222222 222 247789999999999888776652 234568889
Q ss_pred HHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEE
Q 015196 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378 (411)
Q Consensus 299 ~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~ 378 (411)
.++|.++..+.--| +..-+|+|++++-|+|+-.++.|++...| .|...+.|..||+||..+ ....
T Consensus 569 A~DRRKIE~~~F~G-~L~giIaTNALELGIDIG~LDAVl~~GFP-~S~aNl~QQ~GRAGRRNk-------------~SLa 633 (1034)
T KOG4150|consen 569 AEDRRKIESDLFGG-KLCGIIATNALELGIDIGHLDAVLHLGFP-GSIANLWQQAGRAGRRNK-------------PSLA 633 (1034)
T ss_pred hhhHHHHHHHhhCC-eeeEEEecchhhhccccccceeEEEccCc-hhHHHHHHHhccccccCC-------------CceE
Confidence 99999999998887 99999999999999999999999998655 599999999999999885 2333
Q ss_pred EEeecCCchhHHHHHHHHHHHhh
Q 015196 379 YSLVSTDTQEMFYSTKRQQFLID 401 (411)
Q Consensus 379 y~~~~~~~~~~~~~~~r~~~~~~ 401 (411)
..++.....|..|.......+..
T Consensus 634 vyva~~~PVDQ~Y~~HP~~l~~~ 656 (1034)
T KOG4150|consen 634 VYVAFLGPVDQYYMSHPDKLFGS 656 (1034)
T ss_pred EEEEeccchhhHhhcCcHHHhCC
Confidence 33445556666666655555443
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.30 E-value=1.4e-11 Score=95.16 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCHHHHHHHHH----HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEe
Q 015196 45 SGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~----~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t 120 (411)
..++-..||+|||.-.+.-+ ...+.++|+|.|++.+++.+.+.+... .+..-+........+..-|-++|
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~------~~~~~t~~~~~~~~g~~~i~vMc 79 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL------PVRFHTNARMRTHFGSSIIDVMC 79 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS------SEEEESTTSS----SSSSEEEEE
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC------CcccCceeeeccccCCCcccccc
Confidence 56788999999998654432 235679999999999999877766542 23332222212234456788899
Q ss_pred cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh--HHHHH---HhhccccEEEEeeecccC
Q 015196 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--FRKVI---SLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~--~~~~~---~~~~~~~~i~lSATp~~~ 184 (411)
+..+.... ..-....++++||+||||-..+.+ .+..+ .......+|.|||||.-.
T Consensus 80 ~at~~~~~---------~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 80 HATYGHFL---------LNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp HHHHHHHH---------HTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred cHHHHHHh---------cCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 88664321 111113578999999999977652 12122 222234789999999743
No 163
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.25 E-value=4.7e-10 Score=98.03 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=110.5
Q ss_pred CCCCCChhHHHHHHHHH-------hCCCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMF-------GNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~-------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
....|-+-|.|++--.. .+.....+++-..||.||....+.+|.+. .++.+|++.+..|.....+++..
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH
Confidence 45678999999986442 22233456667889999999988877532 35799999999999999999987
Q ss_pred HhCCCCCcEEEEcCchhhh-hcCCCcEEEEecceecccC----CCChhhHHHHHHHhcCCccEEEEecCCCCCch-----
Q 015196 91 WSTIQDDQICRFTSDSKER-FRGNAGVVVTTYNMVAFGG----KRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----- 160 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~-~~~~~~I~v~t~~~l~~~~----~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----- 160 (411)
.. .....+..+..-.... ..-...|+++||..|.... ........+.+++....-++||+||||...+-
T Consensus 114 IG-~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 192 (303)
T PF13872_consen 114 IG-ADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK 192 (303)
T ss_pred hC-CCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc
Confidence 53 3333333222211111 1224579999999987763 22334556667776556679999999998753
Q ss_pred -------hHHHHHHhhccccEEEEeeecccCch
Q 015196 161 -------MFRKVISLTKSHCKLGLTATLVREDE 186 (411)
Q Consensus 161 -------~~~~~~~~~~~~~~i~lSATp~~~~~ 186 (411)
....+.+.++..+++.+|||......
T Consensus 193 ~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 193 KPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 12224455677789999999865443
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.23 E-value=1.8e-09 Score=105.73 Aligned_cols=292 Identities=13% Similarity=0.111 Sum_probs=157.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~ 119 (411)
.-.++.+|+|+|||...+..+... +.++|+++-+++|+.+....|... ++. .-+...............+-+++
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~-gFv~Y~d~~~~~i~~~~~~rLiv 127 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLS-GFVNYLDSDDYIIDGRPYDRLIV 127 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCC-cceeeeccccccccccccCeEEE
Confidence 355778999999999887777553 579999999999999999999864 222 11111111111111113466777
Q ss_pred ecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH-------H----HHHhh-ccccEEEEeeecccCchh
Q 015196 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-------K----VISLT-KSHCKLGLTATLVREDER 187 (411)
Q Consensus 120 t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~-------~----~~~~~-~~~~~i~lSATp~~~~~~ 187 (411)
..++++.... .. -.++|+||+||+-.....-+. . +...+ .+.++|.+-||....--
T Consensus 128 qIdSL~R~~~---------~~--l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv- 195 (824)
T PF02399_consen 128 QIDSLHRLDG---------SL--LDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV- 195 (824)
T ss_pred Eehhhhhccc---------cc--ccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH-
Confidence 7877765421 11 135899999999776544221 1 11222 34588999999863221
Q ss_pred hhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhc-hhhhh----------hhhhcCCCcHHHH
Q 015196 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-SKKKQ----------ALYVMNPNKFRAC 256 (411)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~k~~~~ 256 (411)
+.+..+.+..-...-..+....|+... .+.... .+..+.....+.... ..... ...........-.
T Consensus 196 -dFl~~~Rp~~~i~vI~n~y~~~~fs~R-~~~~~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 196 -DFLASCRPDENIHVIVNTYASPGFSNR-RCTFLR-SLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred -HHHHHhCCCCcEEEEEeeeecCCcccc-eEEEec-ccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 222222222211111122222222211 121111 222222222221110 00000 0000111122334
Q ss_pred HHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCcc
Q 015196 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331 (411)
Q Consensus 257 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~ 331 (411)
..|..... .|.++-||+.+...++.+.+... +.++++..+..+ ++. - ++.+|++=|+.+..|+++.
T Consensus 273 ~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~--W-~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 273 SELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VES--W-KKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccc--c-cceeEEEEeceEEEEeccc
Confidence 44444443 57788899999888777777662 344555555442 222 2 4789999999999999986
Q ss_pred Ccc--EEEEe-cC--CCCCHHHHHHHhhcccccCC
Q 015196 332 EAN--VIIQI-SS--HAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 332 ~~~--~vi~~-~~--~~~s~~~~~Q~~GR~~R~~~ 361 (411)
... -++.+ .+ ...+..+..|++||+-....
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 543 23333 11 11246678999999988774
No 165
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=3.8e-09 Score=105.69 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=86.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHH---HHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~---q~~~~~~~~~~~~~~ 97 (411)
+-++||-.+.+-.+.-+. .-+..|.||=|||++|.+++ +-.++.|-+++.+--|+. +|+..+-+|+|+
T Consensus 166 W~m~~yDVQliGgivLh~---G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGL--- 239 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQ---GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGL--- 239 (1112)
T ss_pred CCCcccchHHhhhhhhcC---CceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCC---
Confidence 346666666666665554 66889999999999988775 334677888888787874 699999999987
Q ss_pred cEEEEcC-chhh---hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 98 QICRFTS-DSKE---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 98 ~v~~~~~-~~~~---~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.+++... .... ...=.++|..+|...|....-|.+-....-+.+ ...+.+.|+||++.+.
T Consensus 240 svg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~v-qR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLV-QRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhh-CcCCceeEeechhhhh
Confidence 4665543 1111 111147899999988877654443222222222 3567899999999875
No 166
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=2e-09 Score=98.01 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=144.0
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHH----HHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCc
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVG----VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a----~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~ 105 (411)
|++-+-+++.++ ...++++.||+|||... +.........+.+--|++..+.+...+...-.+. .+|.-.|-
T Consensus 51 ~k~~F~~~l~~n--Q~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv---~lG~EVGy 125 (699)
T KOG0925|consen 51 QKEEFLKLLLNN--QIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDV---TLGEEVGY 125 (699)
T ss_pred hHHHHHHHHhcC--ceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhcc---ccchhccc
Confidence 455555555544 37888999999999752 2222222356777778887766666555442221 11111111
Q ss_pred hhhhhc---CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc--hh----HHHHHHhhccccEEE
Q 015196 106 SKERFR---GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HM----FRKVISLTKSHCKLG 176 (411)
Q Consensus 106 ~~~~~~---~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~----~~~~~~~~~~~~~i~ 176 (411)
.....+ ...-.-.||-.+|... ....-.-..++++|+||+|+-.- .. ...+...-+..+++.
T Consensus 126 sIrfEdC~~~~T~Lky~tDgmLlrE---------ams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vv 196 (699)
T KOG0925|consen 126 SIRFEDCTSPNTLLKYCTDGMLLRE---------AMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVV 196 (699)
T ss_pred cccccccCChhHHHHHhcchHHHHH---------HhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEE
Confidence 110000 0001112333333211 00010124778999999998542 22 222232324458999
Q ss_pred EeeecccCchhhhhhhhhhccc-chhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHH
Q 015196 177 LTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (411)
Q Consensus 177 lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 255 (411)
||||... ..+..+++.. +... .| ..|... ++. ++..++|+. .+
T Consensus 197 mSatl~a-----~Kfq~yf~n~Pll~v-------pg-~~PvEi--~Yt---~e~erDylE------------------aa 240 (699)
T KOG0925|consen 197 MSATLDA-----EKFQRYFGNAPLLAV-------PG-THPVEI--FYT---PEPERDYLE------------------AA 240 (699)
T ss_pred eecccch-----HHHHHHhCCCCeeec-------CC-CCceEE--Eec---CCCChhHHH------------------HH
Confidence 9999852 2233344422 1111 11 222221 221 122233331 35
Q ss_pred HHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------------CceeeCCCCHHHHHHHHHHh--c-CC-CCeeE
Q 015196 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------KPMIYGATSHVERTKILQAF--K-CS-RDLNT 317 (411)
Q Consensus 256 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------------~~~i~g~~~~~~r~~~~~~f--~-~~-~~~~v 317 (411)
+..+++.|-.+..+-+++|....++++...+.+. +.-++ +.++..+.+-- + ++ ..-+|
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 5666665543345568999988888776666551 11122 22222221111 1 11 24479
Q ss_pred EEeeccCccccCccCccEEEEe------------------cCCCCCHHHHHHHhhcccccCCCc
Q 015196 318 IFLSKVGDNSIDIPEANVIIQI------------------SSHAGSRRQEAQRLGRILRAKGKL 363 (411)
Q Consensus 318 lv~t~~~~~Gid~~~~~~vi~~------------------~~~~~s~~~~~Q~~GR~~R~~~~k 363 (411)
+|+|+.+.+.+.++.+-.||-. .+|. |...-.||.||+||..++|
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PI-SkasA~qR~gragrt~pGk 379 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRTRPGK 379 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccc-hHhHHHHHhhhccCCCCCc
Confidence 9999999999999887777632 2332 6667799999999999643
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.99 E-value=5.6e-09 Score=93.76 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHH----hcCC-----ceEEEEcChhhHHHHHHHHHH
Q 015196 21 KPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~-----~~lil~P~~~l~~q~~~~~~~ 90 (411)
.+.+.+||.|.+....+... ....++++.+|||+|||+.++.++. ..+. +++|.+++..+.+|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34577899999977776432 1124899999999999999877652 2233 899999999998887777655
Q ss_pred H
Q 015196 91 W 91 (411)
Q Consensus 91 ~ 91 (411)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 3
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.99 E-value=5.6e-09 Score=93.76 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHH----hcCC-----ceEEEEcChhhHHHHHHHHHH
Q 015196 21 KPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~-----~~lil~P~~~l~~q~~~~~~~ 90 (411)
.+.+.+||.|.+....+... ....++++.+|||+|||+.++.++. ..+. +++|.+++..+.+|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 34577899999977776432 1124899999999999999877652 2233 899999999998887777655
Q ss_pred H
Q 015196 91 W 91 (411)
Q Consensus 91 ~ 91 (411)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 3
No 169
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.82 E-value=1.7e-08 Score=98.73 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----Cc-eeeCCCCHHHHHHHHHHhcCC---CCeeEEEeeccCcc
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KP-MIYGATSHVERTKILQAFKCS---RDLNTIFLSKVGDN 326 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~-~i~g~~~~~~r~~~~~~f~~~---~~~~vlv~t~~~~~ 326 (411)
.+..+..... ..+++++|.+.+...++.+++.+. .. ++.|..+ .+..+++.|+.. +.-.||++|+.+-|
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 4455555544 345578888888888888887772 33 4455443 456678888873 25789999999999
Q ss_pred ccCc----------cCccEEEEecCCCC---C---------------------HHHHHHHhhcccccCC
Q 015196 327 SIDI----------PEANVIIQISSHAG---S---------------------RRQEAQRLGRILRAKG 361 (411)
Q Consensus 327 Gid~----------~~~~~vi~~~~~~~---s---------------------~~~~~Q~~GR~~R~~~ 361 (411)
|+|+ ..+++||+..-|+. . ...+.|-+||..|...
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~ 603 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPD 603 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCC
Confidence 9999 23667777632211 1 1134899999999885
No 170
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.73 E-value=1.1e-07 Score=83.33 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhc-----------CCceEEEEcChhhHHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~-----------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
+|.+.|.+|+..++... . +++.+|+|+|||.+...++..+ ++++|+++|+...+++....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~---~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN---GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSS---E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCC---CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999998875 5 8999999999997755554333 46899999999999999988877
No 171
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.72 E-value=5.5e-08 Score=97.95 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCCCCChhHHHHHHHHH---hCC---CCcceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMF---GNG---RARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWA 85 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~---~~~---~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~ 85 (411)
+.++.|+-|.+....+. ... ....+++.||||+|||+.++.++. ..+++++|-+.|+.|.+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 35899999999887774 321 135788999999999999887753 35789999999999999975
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.66 E-value=1.3e-06 Score=88.23 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=44.6
Q ss_pred CCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHH-----HhhccccEEEEeeecccC
Q 015196 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI-----SLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 113 ~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~-----~~~~~~~~i~lSATp~~~ 184 (411)
.+.|+++|++.+.... +...++...+..+|+||||+..+..-..++ ..-+...+.++|+.|...
T Consensus 7 ~ggi~~~T~rIl~~Dl--------L~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 7 EGGIFSITSRILVVDL--------LTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred cCCEEEEechhhHhHH--------hcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccc
Confidence 4779999999886532 333444567789999999999866322222 222455899999999864
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.65 E-value=2.3e-07 Score=77.82 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHH--------HHHHHh
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAF--------QFKLWS 92 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~--------~~~~~~ 92 (411)
....|..+++++.... .+++.+|.|+|||++|+..+.++ .++++++-|.... .+... .+..|+
T Consensus 5 ~~~~Q~~~~~al~~~~---~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLNND---LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-GEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH-S---EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-T----SS---------TTT
T ss_pred CCHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-ccccccCCCCHHHHHHHHH
Confidence 4678999999999654 88889999999999988876543 2578888786643 11110 010000
Q ss_pred CCCCCcEE-EEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc
Q 015196 93 TIQDDQIC-RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (411)
Q Consensus 93 ~~~~~~v~-~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~ 171 (411)
........ .+.....+.......|-+.....++-.. .+..+||+|||+++.......++.++..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt---------------~~~~~iIvDEaQN~t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRT---------------FDNAFIIVDEAQNLTPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-----------------B-SEEEEE-SGGG--HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCcc---------------ccceEEEEecccCCCHHHHHHHHcccCC
Confidence 00000000 0011111222345667777666554321 2336999999999999999999998887
Q ss_pred ccEEEEeeecccCch
Q 015196 172 HCKLGLTATLVREDE 186 (411)
Q Consensus 172 ~~~i~lSATp~~~~~ 186 (411)
...+.+.+-|...+.
T Consensus 146 ~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 146 GSKIIITGDPSQIDL 160 (205)
T ss_dssp T-EEEEEE-------
T ss_pred CcEEEEecCceeecC
Confidence 777777777765444
No 174
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.63 E-value=4.2e-06 Score=81.12 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=101.9
Q ss_pred CCCCCChhHHHHHHHHH-------hCCCCcceEEEcCCCCCHHHHHHHHH--Hhc--CCceEEEEcChhhHHHHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMF-------GNGRARSGIIVLPCGAGKSLVGVSAA--CRI--KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~-------~~~~~~~~ll~~~tG~GKT~~a~~~~--~~~--~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
+..-|-..|.+++.-.. -.+....+++-...|.||-.+.+.+| ..+ .+++||++-+..|--.-.+++..
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhh
Confidence 45668888999985432 22333455666667777776655554 334 37999999999887777777776
Q ss_pred HhCCCCCcEEEEc--------CchhhhhcCCCcEEEEecceecccCC-----CChhhHHHHHHHhcCCccEEEEecCCCC
Q 015196 91 WSTIQDDQICRFT--------SDSKERFRGNAGVVVTTYNMVAFGGK-----RSEESEKIIEEIRNREWGLLLMDEVHVV 157 (411)
Q Consensus 91 ~~~~~~~~v~~~~--------~~~~~~~~~~~~I~v~t~~~l~~~~~-----~~~~~~~~~~~~~~~~~~lvIiDE~H~~ 157 (411)
. |.....+..++ +.... +-...|+++||..|.-... ...-+..+++++....-++||+||||..
T Consensus 341 i-gA~~I~V~alnK~KYakIss~en~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 341 I-GATGIAVHALNKFKYAKISSKENT--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred c-CCCCccceehhhcccccccccccC--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 4 23322332222 21111 1235799999998854322 1223445667776666679999999997
Q ss_pred Cch-------------hHHHHHHhhccccEEEEeeecccCc
Q 015196 158 PAH-------------MFRKVISLTKSHCKLGLTATLVRED 185 (411)
Q Consensus 158 ~~~-------------~~~~~~~~~~~~~~i~lSATp~~~~ 185 (411)
.+- ..-.+...+++.+++.-|||-....
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEP 458 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEP 458 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCc
Confidence 641 3334556678889999999965433
No 175
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.60 E-value=3.1e-07 Score=87.14 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
-+|...|..|+.++++.. -.++.+|+|+|||.+...++.++ ..++|+++|+...++|....+.+.
T Consensus 409 pkLN~SQ~~AV~~VL~rp---lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhhchHHHHHHHHHHcCC---ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 478999999999999886 78999999999999988876554 579999999999999999988764
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.59 E-value=2e-06 Score=85.25 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH--H-hcCCceEEEEcChhhHH---HHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA--C-RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~--~-~~~~~~lil~P~~~l~~---q~~~~~~~~~~~~~~ 97 (411)
.-++||-.+.+-.+..+. ..+..+-||=|||++|..++ . -.++.+.+++..--|+. .|+..+-+|+|+
T Consensus 77 lg~~~~dVQliG~i~lh~---g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGl--- 150 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHL---GDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGL--- 150 (822)
T ss_pred cCCChhhHHHhhhhhhcC---CceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCC---
Confidence 345666666666665554 67889999999999988875 2 34678888888777764 588888888887
Q ss_pred cEEEEcCchhhhhc---CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 98 QICRFTSDSKERFR---GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 98 ~v~~~~~~~~~~~~---~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.+++.......... =.++|.-+|...|-...-+.+......+.+ .....+.|+||++.+.
T Consensus 151 svG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~v-qr~~~faIvDEvDSIL 213 (822)
T COG0653 151 SVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKV-QRGLNFAIVDEVDSIL 213 (822)
T ss_pred ceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhh-hccCCeEEEcchhhee
Confidence 46655443322111 137899999988877655544322233333 2356788888888875
No 177
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.48 E-value=6.6e-07 Score=84.41 Aligned_cols=64 Identities=27% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
..|-+.|..|+...+... .-.++.+|+|+|||.+...++.+ .++++|+.+|+...++...+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k--~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNK--DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccC--CceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 567888999998887764 47889999999999998777654 47899999999998888887643
No 178
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=1.6e-06 Score=88.02 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCCC-ChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHh----cC--CceEEEEcChhhHHHHHHHHHH
Q 015196 23 HAQP-RPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IK--KSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 23 ~~~l-~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~----~~--~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.+.+ ||.|.+....+... ....++++.+|||+|||+..+.++.. .+ .++++.+.+.+=..|..+++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4554 99999999987532 12358999999999999987666432 23 5899999998888899999887
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.45 E-value=2e-06 Score=72.76 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 101 (411)
+|.+-|++++..++.+. .+-.++.++.|+|||.+...+. ...+.++++++|+...+....+.. +.. +.
T Consensus 1 ~L~~~Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~----~~~---a~- 71 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT----GIE---AQ- 71 (196)
T ss_dssp -S-HHHHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH----TS----EE-
T ss_pred CCCHHHHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh----Ccc---hh-
Confidence 47889999999998754 1356778999999999865543 334679999999998777755542 221 11
Q ss_pred EcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc-ccEEEEeee
Q 015196 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKLGLTAT 180 (411)
Q Consensus 102 ~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~-~~~i~lSAT 180 (411)
|..++.......... ........++||+||+-.+....+..++..+.. ...+.+.|-
T Consensus 72 ------------------Ti~~~l~~~~~~~~~----~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 72 ------------------TIHSFLYRIPNGDDE----GRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ------------------EHHHHTTEECCEECC----SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ------------------hHHHHHhcCCccccc----ccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 111111110000000 000014457999999999999988888887765 345666666
Q ss_pred cc
Q 015196 181 LV 182 (411)
Q Consensus 181 p~ 182 (411)
|.
T Consensus 130 ~~ 131 (196)
T PF13604_consen 130 PN 131 (196)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 180
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.44 E-value=3.5e-07 Score=80.08 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHH---HHHHHHhCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWA---FQFKLWSTIQD 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~---~~~~~~~~~~~ 96 (411)
.+.|++-|.-+.-.+.. +-+..+.||=|||+++.+++ +-.++.|=|++.+..|+..-. ..|-+++|+
T Consensus 75 g~~p~~vQll~~l~L~~-----G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl-- 147 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHK-----GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL-- 147 (266)
T ss_dssp S----HHHHHHHHHHHT-----TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT---
T ss_pred CCcccHHHHhhhhhccc-----ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh--
Confidence 35566667666655533 44999999999999977664 234678999999999987644 444455555
Q ss_pred CcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
.++...+.... .+ .++|+.+|...|....-+.+..... ...-...+.++|+||++.+.
T Consensus 148 -sv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~-~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 -SVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSK-NEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSG-GG--SSSSSEEEECTHHHHT
T ss_pred -ccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhcc-chhccCCCCEEEEeccceEE
Confidence 56666554321 22 2679999998775421000000000 00013577899999999865
No 181
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=6.3e-06 Score=65.03 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=63.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEE-cChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLA-TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~-P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (411)
+..++.+|+|+|||.++-.++... ...++++. |...-...+..++.+.++..... .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~---------- 69 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----R---------- 69 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----T----------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----c----------
Confidence 467889999999999988877654 34445444 33322455666666655543221 0
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCC-CchhHHHHHHhh-ccccEEEEeeecc
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAHMFRKVISLT-KSHCKLGLTATLV 182 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~-~~~~~~~~~~~~-~~~~~i~lSATp~ 182 (411)
.+...+ ...+.+.+......+||+||+|++ ....+..+.... .....+.++|||.
T Consensus 70 ----~~~~~l---------~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 70 ----QTSDEL---------RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ----S-HHHH---------HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ----CCHHHH---------HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 011111 224445554455579999999998 655444443332 3345688899984
No 182
>PRK10536 hypothetical protein; Provisional
Probab=98.23 E-value=3e-06 Score=73.17 Aligned_cols=137 Identities=10% Similarity=0.076 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-C---CceEEEEcChhh--------------HHHHHH
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-K---KSCLCLATNAVS--------------VDQWAF 86 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-~---~~~lil~P~~~l--------------~~q~~~ 86 (411)
....|...+..+... .-+++.+|+|+|||+++..+..+ + . .++++.=|.... ...|..
T Consensus 60 ~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~ 136 (262)
T PRK10536 60 RNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFR 136 (262)
T ss_pred CCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHH
Confidence 455677777766553 37888899999999998887653 2 2 234444444331 111221
Q ss_pred HHHHHhCCCCCcEEEEcCchhhhh--cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH
Q 015196 87 QFKLWSTIQDDQICRFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (411)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~ 164 (411)
-+...+. ..+.....+.. .....|-+....-++-. ....++||+|||+++.......
T Consensus 137 pi~D~L~------~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr---------------tl~~~~vIvDEaqn~~~~~~k~ 195 (262)
T PRK10536 137 PVYDVLV------RRLGASFMQYCLRPEIGKVEIAPFAYMRGR---------------TFENAVVILDEAQNVTAAQMKM 195 (262)
T ss_pred HHHHHHH------HHhChHHHHHHHHhccCcEEEecHHHhcCC---------------cccCCEEEEechhcCCHHHHHH
Confidence 1111110 00011111111 12344555444333221 1344799999999999998888
Q ss_pred HHHhhccccEEEEeeecccCch
Q 015196 165 VISLTKSHCKLGLTATLVREDE 186 (411)
Q Consensus 165 ~~~~~~~~~~i~lSATp~~~~~ 186 (411)
++..+.....+.+++-|...|.
T Consensus 196 ~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 196 FLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHhhcCCCCEEEEeCChhhccC
Confidence 8888888888888888865544
No 183
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.20 E-value=1e-06 Score=86.09 Aligned_cols=288 Identities=17% Similarity=0.287 Sum_probs=156.5
Q ss_pred CCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..|.+||-+.++-+... ...-++++..++|.|||..++.....+ ....|+++|..+ +-.|..++..+.. .
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT-~~nwe~e~~~wap--~ 370 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLST-IVNWEREFELWAP--S 370 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCcc-ccCCCCchhccCC--C
Confidence 67889999999887433 123478889999999999876654332 357899999877 4456777766532 1
Q ss_pred CcEEEEcCchhhh---------------------------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEE
Q 015196 97 DQICRFTSDSKER---------------------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLL 149 (411)
Q Consensus 97 ~~v~~~~~~~~~~---------------------------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lv 149 (411)
..+....|..... -.-..++.+.+|+.... ...++. .-.++++
T Consensus 371 ~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~-------~~~il~---~v~w~~l 440 (696)
T KOG0383|consen 371 FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI-------DQSILF---SVQWGLL 440 (696)
T ss_pred cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc-------CHHHHh---hhhccee
Confidence 1222222211100 00012333333332221 112222 3467899
Q ss_pred EEecCCCCCchhHH--HHHHhhccccEEEEeeecccCchhhhhhhhhh--------------cccchhhchHHHHhc---
Q 015196 150 LMDEVHVVPAHMFR--KVISLTKSHCKLGLTATLVREDERITDLNFLI--------------GPKLYEANWLDLVKG--- 210 (411)
Q Consensus 150 IiDE~H~~~~~~~~--~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--- 210 (411)
|+||+|++.+..-. +.+......+.+++|+||..+.... ++.++ ....++.+-.+-++.
T Consensus 441 ivde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~e--l~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~ 518 (696)
T KOG0383|consen 441 IVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEE--LFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHL 518 (696)
T ss_pred EeechhhcccchhhhhhhccccccchhhhccCCcchhhhHH--hhhcccccCcccccchhhhhhhcchhhHHHHHHhhcc
Confidence 99999999987433 2333334457799999998655431 21111 111111111111111
Q ss_pred ------------CCc---ccceeEEEEcCCC---HHHHHHHHhhhch-----hh-----------hh------hh-----
Q 015196 211 ------------GFI---ANVQCAEVWCPMT---KEFFSEYLKKENS-----KK-----------KQ------AL----- 245 (411)
Q Consensus 211 ------------~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~-----------~~------~~----- 245 (411)
..+ .......+.+.++ .++++..+.+.-. .. ++ ..
T Consensus 519 l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~ 598 (696)
T KOG0383|consen 519 LLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEP 598 (696)
T ss_pred ccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCccccc
Confidence 011 1112222222322 2333322211100 00 00 00
Q ss_pred -----------hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----CceeeCCCCHHHHHHHHHHhc
Q 015196 246 -----------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAFK 310 (411)
Q Consensus 246 -----------~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~i~g~~~~~~r~~~~~~f~ 310 (411)
..-...|...+..++.... +.+.++++|...+...+.+...+. ...+.|......|...+..|+
T Consensus 599 ~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~-~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n 677 (696)
T KOG0383|consen 599 LEENGEYLGSALIKASGKLTLLLKMLKKLK-SSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFN 677 (696)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccC
Confidence 0001123334444443333 678999999999999888888883 346789999999999999999
Q ss_pred CC--CCeeEEEeeccCccc
Q 015196 311 CS--RDLNTIFLSKVGDNS 327 (411)
Q Consensus 311 ~~--~~~~vlv~t~~~~~G 327 (411)
.. ...-.|.+|.+++.|
T Consensus 678 ~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 678 APGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCCccceEEEeecccccCC
Confidence 54 355688889988776
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.17 E-value=5.7e-06 Score=77.01 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
-++|.+.+|||||++|+.++..+ +.++++++++..|.......+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 46788999999999999998776 468999999999988888877663
No 185
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.17 E-value=2.5e-05 Score=70.81 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=74.2
Q ss_pred HHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCC
Q 015196 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (411)
Q Consensus 35 ~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (411)
..++..+.-.+.++++|+|+|||.+|-.++...+..+.-+....+=+.+...-+.+.-
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~---------------------- 97 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR---------------------- 97 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH----------------------
Confidence 4556655566899999999999999999988888888877776655555444333310
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecccC
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~~~ 184 (411)
......+-.++++||+|++.-.+-..++-.+-...+++..||-.+.
T Consensus 98 ------------------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 98 ------------------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred ------------------------HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 0000122348999999999987777677777778889999986543
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.16 E-value=1.8e-05 Score=65.22 Aligned_cols=92 Identities=20% Similarity=0.327 Sum_probs=63.7
Q ss_pred CCCeEEEEecChhHHHHHHHHhCC-------ceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec--cCccccCccC--ccE
Q 015196 267 RGDKIIVFADNLFALTEYAMKLRK-------PMIYGATSHVERTKILQAFKCSRDLNTIFLSK--VGDNSIDIPE--ANV 335 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l~~-------~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~--~~~~Gid~~~--~~~ 335 (411)
.++.++||+++.+.++.+.+.+.. .++.. ...+...+++.|+++ .-.||+++. .+.||+|+++ +..
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-EGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-SSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-cCeEEEEEecccEEEeecCCCchhhe
Confidence 357899999999999999999853 33443 245788899999997 888999998 9999999996 445
Q ss_pred EEEecCCCC---CH--------------------------HHHHHHhhcccccCC
Q 015196 336 IIQISSHAG---SR--------------------------RQEAQRLGRILRAKG 361 (411)
Q Consensus 336 vi~~~~~~~---s~--------------------------~~~~Q~~GR~~R~~~ 361 (411)
+|+..-|+. ++ ....|.+||+.|..+
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~ 139 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED 139 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC
Confidence 666533322 21 123899999999885
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.14 E-value=8.5e-06 Score=57.01 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=35.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~ 88 (411)
-+++.+|+|+|||.+++..+.++ ++++++++|++..+++..+.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55669999999997766655332 678999999999999888777
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.13 E-value=1.6e-05 Score=67.45 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred CCcccCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcC-CceEEEEcChhhHHHHHHHHHHH
Q 015196 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIK-KSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 16 ~~~~~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~-~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
+-+++.+++.+|+-|.+...+++......+.+..+-+|.|||-+.+-.++ .-+ .-+.+++| ++|.+|....+...
T Consensus 14 Ll~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 14 LLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 45567888999999999999999764446889999999999988544322 222 34556667 67999988888766
Q ss_pred hC-CCCCcEEEEcC--chh-------------hhhcCCCcEEEEecceecccCC---------C---ChhhHHHHHHHhc
Q 015196 92 ST-IQDDQICRFTS--DSK-------------ERFRGNAGVVVTTYNMVAFGGK---------R---SEESEKIIEEIRN 143 (411)
Q Consensus 92 ~~-~~~~~v~~~~~--~~~-------------~~~~~~~~I~v~t~~~l~~~~~---------~---~~~~~~~~~~~~~ 143 (411)
++ +....+..+.- ... ........|+++|++.+.+..- . .....+...++.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~- 171 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD- 171 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Confidence 54 22223322221 100 1122457899999998765310 0 111222333332
Q ss_pred CCccEEEEecCCCCCchhHH
Q 015196 144 REWGLLLMDEVHVVPAHMFR 163 (411)
Q Consensus 144 ~~~~lvIiDE~H~~~~~~~~ 163 (411)
...-=|+||+|...+..++
T Consensus 172 -~~~rdilDEsDe~L~~k~q 190 (229)
T PF12340_consen 172 -EHSRDILDESDEILSVKYQ 190 (229)
T ss_pred -hcCCeEeECchhccCcceE
Confidence 2334599999997765444
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.13 E-value=1.9e-05 Score=77.76 Aligned_cols=140 Identities=12% Similarity=0.030 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---C-----CceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~-----~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
++|+.|+...+.+. -++|.+++|+|||.+...++..+ . .++++.+||-..+..+.+.+.......+.
T Consensus 148 ~~Qk~A~~~al~~~---~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~-- 222 (586)
T TIGR01447 148 NWQKVAVALALKSN---FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA-- 222 (586)
T ss_pred HHHHHHHHHHhhCC---eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc--
Confidence 79999999988875 88999999999999866554322 1 37999999988777766665543210000
Q ss_pred EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEee
Q 015196 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSA 179 (411)
.... .....+-..|.+++.......... ....-+...+++||+||+-.+....+..++..++....+.+.|
T Consensus 223 ---~~~~----~~~~~~~a~TiHrlLg~~~~~~~~--~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 223 ---AEAL----IAALPSEAVTIHRLLGIKPDTKRF--RHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred ---chhh----hhccccccchhhhhhcccCCcchh--hhcccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEEC
Confidence 0000 000112234544443322110000 0001112467899999999999998888888877665566666
Q ss_pred ec
Q 015196 180 TL 181 (411)
Q Consensus 180 Tp 181 (411)
=+
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 44
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.13 E-value=1e-05 Score=80.67 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=55.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
..|.+.|.+|+...+... ...++.+|+|+|||.++..++.+ .+.++|+++|+...+++....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999988753 37889999999999987776644 467999999999999999988876
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.11 E-value=6.1e-05 Score=76.38 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=79.9
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcC--CceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..+.|.+-|++|+..+..+. -.++.+++|+|||.++..++ ...+ .++++++|+...+..+. +.++.+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~---~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHK---VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG----EVTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH----HhcCCcc
Confidence 35789999999999987654 78999999999999865543 3344 57888999987665433 3223221
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEE
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~ 176 (411)
. |..++....... ......+ .....++||+||++.+....+..++..++....+.
T Consensus 393 ~----------------------Tih~lL~~~~~~-~~~~~~~--~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 S----------------------TIHRLLGYGPDT-FRHNHLE--DPIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred c----------------------cHHHHhhccCCc-cchhhhh--ccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 1 111111100000 0000000 02456899999999999988888888776554555
Q ss_pred Eeeec
Q 015196 177 LTATL 181 (411)
Q Consensus 177 lSATp 181 (411)
|-|=|
T Consensus 448 lvGD~ 452 (720)
T TIGR01448 448 LVGDT 452 (720)
T ss_pred EECcc
Confidence 55543
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.00 E-value=4e-05 Score=75.68 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=84.8
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---C----CceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~----~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..++|++|+...+.+. -++|.+++|+|||.+...++..+ . .++++++|+...+....+.+......
T Consensus 153 ~~d~Qk~Av~~a~~~~---~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~---- 225 (615)
T PRK10875 153 EVDWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ---- 225 (615)
T ss_pred CCHHHHHHHHHHhcCC---eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc----
Confidence 4589999999888765 78999999999999865554322 2 36888999998777777666542210
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEe
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lS 178 (411)
... ....... ...-..|...+.......... ....-+....++||+||+-.+....+..++..++....+.+-
T Consensus 226 ~~~-~~~~~~~----~~~~a~TiHrlLg~~~~~~~~--~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlv 298 (615)
T PRK10875 226 LPL-TDEQKKR----IPEEASTLHRLLGAQPGSQRL--RYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFL 298 (615)
T ss_pred ccc-chhhhhc----CCCchHHHHHHhCcCCCccch--hhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEe
Confidence 000 0000000 011123444333221110000 001111245689999999999999888888888776555555
Q ss_pred eec
Q 015196 179 ATL 181 (411)
Q Consensus 179 ATp 181 (411)
|=+
T Consensus 299 GD~ 301 (615)
T PRK10875 299 GDR 301 (615)
T ss_pred cch
Confidence 543
No 193
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.90 E-value=2.3e-05 Score=80.03 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=88.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHH-hc--------------------CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC-RI--------------------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~-~~--------------------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 103 (411)
.+++.-..|.|||...+.... .. -+.+||++| .++..||..|+....... ..+..+-
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~Y~ 453 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSL-LKVLLYF 453 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhcccc-ceEEEEe
Confidence 457788899999988665532 11 147999999 568999999999975322 2454444
Q ss_pred Cchhh-----hhcCCCcEEEEecceecccCCCC--hhhHHHHHHHhcCCc-----------cEEEEecCCCCCch--hHH
Q 015196 104 SDSKE-----RFRGNAGVVVTTYNMVAFGGKRS--EESEKIIEEIRNREW-----------GLLLMDEVHVVPAH--MFR 163 (411)
Q Consensus 104 ~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~--~~~~~~~~~~~~~~~-----------~lvIiDE~H~~~~~--~~~ 163 (411)
|-.+. ...-+++|+++||+.|+...... +...+.+.. ....+ =-|++|||+.+.+. ...
T Consensus 454 Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~-qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a 532 (1394)
T KOG0298|consen 454 GIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRH-QSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAA 532 (1394)
T ss_pred chhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhc-ccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHH
Confidence 42222 22346899999999987754322 111111111 11111 13899999999865 333
Q ss_pred HHHHhhccccEEEEeeecccC
Q 015196 164 KVISLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 164 ~~~~~~~~~~~i~lSATp~~~ 184 (411)
+.+..+.+..+.+.||||.+.
T Consensus 533 ~M~~rL~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 533 EMVRRLHAINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHhhhhceeeecCCchhh
Confidence 445566777899999999876
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=0.00029 Score=56.42 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcC
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~ 77 (411)
+...+...+........++.+|+|+|||.++..++..+ +..++++...
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 34444444444234578999999999999988887766 5566666553
No 195
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.89 E-value=0.00011 Score=62.09 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=25.5
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
..++++++|+|+|||..|..++.+++..+.++.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~s 82 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITS 82 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEecc
Confidence 458999999999999999999999887665554
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.87 E-value=8.8e-05 Score=74.03 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 101 (411)
.|..-|++|+.+.+... ...++.+-+|+|||.+...++ ...+++||+.+=|...++...-.+..+ ++.--+.|.
T Consensus 669 ~LN~dQr~A~~k~L~ae--dy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~-~i~~lRLG~ 745 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAE--DYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF-GIYILRLGS 745 (1100)
T ss_pred hcCHHHHHHHHHHHhcc--chheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc-CcceeecCC
Confidence 68999999999988765 488999999999998866654 456889999999998888888888765 332111111
Q ss_pred ---EcCchh----------------hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 102 ---FTSDSK----------------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 102 ---~~~~~~----------------~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
++.... ........|+.+|.-.+-. ..|.+..||++|+|||-.+.-+
T Consensus 746 ~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~------------plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 746 EEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH------------PLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc------------hhhhccccCEEEEccccccccc
Confidence 111110 1223556788888754432 3445678999999999998866
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.81 E-value=0.00043 Score=62.12 Aligned_cols=144 Identities=14% Similarity=0.181 Sum_probs=80.2
Q ss_pred CCCCChhHHH-HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH------hcCCceEEEEcChhhH--------------
Q 015196 23 HAQPRPYQEK-SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC------RIKKSCLCLATNAVSV-------------- 81 (411)
Q Consensus 23 ~~~l~~~Q~~-ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~------~~~~~~lil~P~~~l~-------------- 81 (411)
.+++|..+|. |+..++. ..-.-+.+.++.|+|||+.|+++.. +..+++++.=|...+-
T Consensus 225 Gi~prn~eQ~~ALdlLld-~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 225 GIRPRNAEQRVALDLLLD-DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred ccCcccHHHHHHHHHhcC-CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3566665554 4555444 3334566789999999999888743 2345777776765432
Q ss_pred HHHHHHHHHHhCC--CCCcEEEEcCchhhhhcCCCcEEE--EecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCC
Q 015196 82 DQWAFQFKLWSTI--QDDQICRFTSDSKERFRGNAGVVV--TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (411)
Q Consensus 82 ~q~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~I~v--~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~ 157 (411)
.-|+.-+...+.. ....++ +...+.......|-| .||-.=+ ...-.+||+|||+++
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGR-----------------Sl~~~FiIIDEaQNL 363 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGR-----------------SLPDSFIIIDEAQNL 363 (436)
T ss_pred cchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeeccc-----------------ccccceEEEehhhcc
Confidence 2243332221110 001111 111111111122222 2221111 122359999999999
Q ss_pred CchhHHHHHHhhccccEEEEeeecccCchh
Q 015196 158 PAHMFRKVISLTKSHCKLGLTATLVREDER 187 (411)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~lSATp~~~~~~ 187 (411)
.......++........|.|++-|...+..
T Consensus 364 TpheikTiltR~G~GsKIVl~gd~aQiD~~ 393 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTGDPAQIDTP 393 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcCCHHHcCCc
Confidence 999999999988888888889888765543
No 198
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.76 E-value=0.00035 Score=66.60 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCC
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 113 (411)
+..++......+.++.+|+|+|||.+|..++...+..++.+.+...-..+...-+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~---------------------- 84 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEA---------------------- 84 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHH----------------------
Confidence 5555665555688999999999999998888777666655554322111111111000
Q ss_pred CcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecc
Q 015196 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (411)
Q Consensus 114 ~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~ 182 (411)
.......+..++++||+|++.......++..+....++.+.+|..
T Consensus 85 ------------------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 85 ------------------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred ------------------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCC
Confidence 000001244699999999998766665555555556666666543
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.72 E-value=0.00017 Score=60.78 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=25.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
-.++.+|+|+|||..++..+.+. +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35778999999999888877544 568888866
No 200
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.67 E-value=0.00019 Score=71.08 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=33.9
Q ss_pred cccCCCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHH
Q 015196 18 MELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGV 61 (411)
Q Consensus 18 ~~~~~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~ 61 (411)
+++...+++++-|......++.. ....++++..|||+|||+..+
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 34556789999999999988643 122478999999999998743
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00023 Score=56.58 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCc---eEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~---~lil~P~~~ 79 (411)
...++.+|+|+|||.++..++..+... ++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 478999999999999999998887754 777776654
No 202
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.65 E-value=0.00033 Score=61.54 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCeeEEEeeccCccccCccCc--------cEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCccee
Q 015196 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEA--------NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375 (411)
Q Consensus 304 ~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~--------~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~ 375 (411)
...+.|.+| +.+|+|.+.++++|+.++.- .+-|.+..| +|....+|.+||++|.++. ..
T Consensus 52 ~e~~~F~~g-~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~-----------~~ 118 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELP-WSADKAIQQFGRTHRSNQV-----------SA 118 (278)
T ss_pred HHHHHHhCC-CceEEEEecccccccchhccccCCCCCceEEEEeeCC-CCHHHHHHHhccccccccc-----------cC
Confidence 456799998 99999999999999998732 133444345 4999999999999999963 23
Q ss_pred EEEEEeecCCchhHHHHHHHHHHHhhcCC
Q 015196 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404 (411)
Q Consensus 376 ~~~y~~~~~~~~~~~~~~~r~~~~~~~g~ 404 (411)
+.+..+++.-..|..+...-.+-|+.+|.
T Consensus 119 P~y~~l~t~~~gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 119 PEYRFLVTDLPGERRFASTVARRLESLGA 147 (278)
T ss_pred CEEEEeecCCHHHHHHHHHHHHHHhhccc
Confidence 43444556566676666444444555553
No 203
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.60 E-value=0.00046 Score=61.85 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=66.9
Q ss_pred HHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCc---eEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhc
Q 015196 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR 111 (411)
Q Consensus 35 ~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~---~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 111 (411)
..++..+.-.+.++++|+|+|||.+|-.++...+++ ++=++.+.+-.....+-|.+-.+
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~------------------ 215 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN------------------ 215 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH------------------
Confidence 444555555688999999999999998888776654 55555555555555554443110
Q ss_pred CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecccC
Q 015196 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRE 184 (411)
Q Consensus 112 ~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~~~ 184 (411)
. ..+ ..+-.++.+||+|++.-.+-..++-.....-+++..||-.+.
T Consensus 216 -------------------------~-~~l-~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 216 -------------------------E-KSL-TKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred -------------------------H-Hhh-hcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCC
Confidence 0 001 133458899999998765544444444555678888886543
No 204
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.59 E-value=0.00015 Score=63.38 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=31.0
Q ss_pred hHHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 29 YQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 29 ~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
.|..+++.+. ......+.++.+|+|+|||-+++..+..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4777776653 2233457899999999999999999887764
No 205
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.57 E-value=0.0001 Score=74.14 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=77.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhh--hcCCCcE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--FRGNAGV 116 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~I 116 (411)
.+.++-+|||+|||..+...+.+. ..++++++|.++|+..-.++.......+...+...++..... -....++
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~ 1023 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADI 1023 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCce
Confidence 467888999999999987776433 469999999999988766666554434334455556554432 2346899
Q ss_pred EEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 117 ~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
+|+|+++..-..+.+.. .+.+ ..+.++|+||.|.+...
T Consensus 1024 ~ittpek~dgi~Rsw~~----r~~v--~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1024 VITTPEKWDGISRSWQT----RKYV--QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EEcccccccCccccccc----hhhh--ccccceeecccccccCC
Confidence 99999988665443222 1222 45678999999998865
No 206
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.52 E-value=0.0069 Score=57.04 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=69.4
Q ss_pred cCCCeEEEEecChhHHHHHHHHhC---C--ceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC--ccccCccCccEEEE
Q 015196 266 QRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG--DNSIDIPEANVIIQ 338 (411)
Q Consensus 266 ~~~~~~ivf~~~~~~~~~l~~~l~---~--~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~--~~Gid~~~~~~vi~ 338 (411)
.....+|||+++.-.--.+.+.|. + ..++.-++..+-...-..|..| +.++|+.|.-+ =.=..+.++..||+
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEE
Confidence 446789999999888777777773 3 3467778888888888999998 99999998433 34556888999999
Q ss_pred ecCCCCCHHHHHHHhhcccccC
Q 015196 339 ISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 339 ~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
+.+| ..+..|...+.-.....
T Consensus 377 Y~~P-~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 377 YGPP-ENPQFYSELLNMLDESS 397 (442)
T ss_pred ECCC-CChhHHHHHHhhhcccc
Confidence 8544 57777766665544433
No 207
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.50 E-value=0.00069 Score=68.42 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=27.5
Q ss_pred CccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecc
Q 015196 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (411)
Q Consensus 145 ~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~ 182 (411)
+..++|+||+|++.......++..+....++..++|..
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTE 146 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCC
Confidence 45699999999998776665665555566677777654
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.48 E-value=0.00027 Score=64.87 Aligned_cols=94 Identities=7% Similarity=0.132 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
|.+-|.+++.. .. ++.+|.|+.|||||.+++.-+..+ ..++|++++++..+..+...+...++.....
T Consensus 1 l~~eQ~~~i~~--~~---~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TE---GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---S---SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CC---CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 46778888877 23 389999999999999976654322 2589999999999999988888764321000
Q ss_pred EEEEcC-chhhhhcCCCcEEEEecceecc
Q 015196 99 ICRFTS-DSKERFRGNAGVVVTTYNMVAF 126 (411)
Q Consensus 99 v~~~~~-~~~~~~~~~~~I~v~t~~~l~~ 126 (411)
.... ...........+.|.|.+++..
T Consensus 76 --~~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 76 --SSDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp --CTT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred --ccccccccccccccchheeehhhhhhh
Confidence 0000 0000111235688899987754
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.48 E-value=0.0016 Score=58.25 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCChhHHHHHHHHHh--CCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 24 AQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~--~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+-+.+.+.+++..+.. .......++.+|+|+|||.++-.+...+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4556666777776532 11223578899999999999888877665
No 210
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.46 E-value=0.00091 Score=68.27 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..+.|.+-|++|+..++.+. +-++|.+++|+|||.++-.+. ...+.++++++|+-..+..+.+ -.+....
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~----~~g~~a~- 421 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQA----ESGIESR- 421 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHh----ccCCcee-
Confidence 45789999999999988753 377899999999998865543 3346789999999875555432 2232111
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-ccccEEEE
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~-~~~~~i~l 177 (411)
|..++.....+. .-.....++||+||+-.+....+..++... .....+.|
T Consensus 422 ---------------------Ti~~~~~~~~~~--------~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 422 ---------------------TLASLEYAWANG--------RDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVL 472 (744)
T ss_pred ---------------------eHHHHHhhhccC--------cccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 111110000000 000146689999999999988777777643 22333444
Q ss_pred ee
Q 015196 178 TA 179 (411)
Q Consensus 178 SA 179 (411)
.|
T Consensus 473 VG 474 (744)
T TIGR02768 473 VG 474 (744)
T ss_pred EC
Confidence 44
No 211
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.40 E-value=0.0019 Score=50.74 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
.++.+|+|+|||.++-.++..++..++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 478999999999999999999887776666544
No 212
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.33 E-value=0.022 Score=60.02 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..+.|.+-|++++..+.... +-++|.++.|+|||.+.-.+. ...+.+++.++|+-..+... .+-.|+...
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~--r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~Gi~a~- 450 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPA--RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEAGIQSR- 450 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhhCCCee-
Confidence 45789999999999886433 478889999999999865543 34577899999998766544 333343211
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhc-cccEEEE
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGL 177 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~-~~~~i~l 177 (411)
|..++........ .. ....++|||||+..+....+..++.... ....+.|
T Consensus 451 ---------------------TIas~ll~~~~~~------~~--l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 451 ---------------------TLSSWELRWNQGR------DQ--LDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred ---------------------eHHHHHhhhccCc------cC--CCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 1111100000000 00 1345699999999999998888887764 3344555
Q ss_pred eeec
Q 015196 178 TATL 181 (411)
Q Consensus 178 SATp 181 (411)
-|=|
T Consensus 502 VGD~ 505 (1102)
T PRK13826 502 VGDP 505 (1102)
T ss_pred ECCH
Confidence 4443
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.31 E-value=0.0013 Score=58.63 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=19.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
.+.++.+|+|+|||.+|-.++..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999998777654
No 214
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00083 Score=59.17 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=23.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil 74 (411)
.+.++++|+|+|||.++..+... .+.+++++
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 58999999999999998776543 35566554
No 215
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.29 E-value=0.0011 Score=61.95 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHh---CCCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHH--HHHHHHHhCCCC
Q 015196 25 QPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW--AFQFKLWSTIQD 96 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~---~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~--~~~~~~~~~~~~ 96 (411)
+|.+-|+++++.++. ...+...++.++-|+|||++.-.+...+ ++.+++++|+-..+... =..+..+++++.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 467889999888732 2344688999999999999966655444 45789999987655444 135556665542
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHH
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~ 165 (411)
... . ...+ ..... ......+ ...+++|+||+-.+....+..+
T Consensus 81 ~~~------~------~~~~---~~~~~----------~~~~~~l--~~~~~lIiDEism~~~~~l~~i 122 (364)
T PF05970_consen 81 NNN------E------KSQC---KISKN----------SRLRERL--RKADVLIIDEISMVSADMLDAI 122 (364)
T ss_pred ccc------c------cccc---ccccc----------chhhhhh--hhheeeecccccchhHHHHHHH
Confidence 210 0 0001 11000 0111222 4557999999999988755543
No 216
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.28 E-value=0.0016 Score=67.80 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=75.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|.+-|++|+..++... ..++|.++.|+|||.+.-.+. ...+.+++.++|+-..+.... .-.|+...
T Consensus 344 g~~Ls~eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi~a~-- 415 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE----GGSGIASR-- 415 (988)
T ss_pred CCCCCHHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh----hccCcchh--
Confidence 4679999999999988754 367899999999998843332 334678999999886554433 21222111
Q ss_pred EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-ccccEEEEe
Q 015196 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGLT 178 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~-~~~~~i~lS 178 (411)
|..+|....... .-.....++||+||+-.+....+..++... .....+.|.
T Consensus 416 --------------------TI~sll~~~~~~--------~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 416 --------------------TIASLEHGWGQG--------RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred --------------------hHHHHHhhhccc--------ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence 111111000000 000235579999999999998888777654 333344444
Q ss_pred eec
Q 015196 179 ATL 181 (411)
Q Consensus 179 ATp 181 (411)
|=|
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 433
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.26 E-value=0.0048 Score=52.09 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=61.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcCh--hhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA--VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~--~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v 118 (411)
.-.++++|||+|||.+++.+++++ ++++.+++.-. .=+.++.+.+.+.++++ .+......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp-----~~~~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP-----FYVARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE-----EEESSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc-----cchhhcch----------
Confidence 356789999999999987776433 55666666332 22333344444444431 11110000
Q ss_pred EecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hHHHHHHhhcc-ccEEEEeeeccc
Q 015196 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKS-HCKLGLTATLVR 183 (411)
Q Consensus 119 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~~~~~~~~~~-~~~i~lSATp~~ 183 (411)
.+. +......+.+...++++|++|-+-+.... ....+...... ...+.+|||-..
T Consensus 67 -~~~---------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 -DPA---------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp -CHH---------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred -hhH---------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 000 00123345555678899999999887643 33334444433 366888988864
No 218
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0026 Score=60.59 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=26.6
Q ss_pred CCccEEEEecCCCCCchhHHHHHHhhcc--ccEEEEeeec
Q 015196 144 REWGLLLMDEVHVVPAHMFRKVISLTKS--HCKLGLTATL 181 (411)
Q Consensus 144 ~~~~lvIiDE~H~~~~~~~~~~~~~~~~--~~~i~lSATp 181 (411)
.++.++|+||+|.+....+..++..+.. .+++++-||.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 4567999999999998877766655533 3555544553
No 219
>PLN03025 replication factor C subunit; Provisional
Probab=97.24 E-value=0.0028 Score=58.23 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+...+.+..++.++...+.++++|+|+|||.++..++..+
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3344455555555444578999999999999988887765
No 220
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0029 Score=60.93 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhCCCC-cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++-...+...+..+.. +..++++|+|+|||.+|..++..+.
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344445555554432 3468999999999999988877664
No 221
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0037 Score=57.30 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=34.9
Q ss_pred CCChhHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++|||+...+.++..+. ++..++.+|.|.|||.+|...+..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 468999999999987653 3456789999999999988887654
No 222
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.20 E-value=0.0062 Score=57.23 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHH---HhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 25 ~l~~~Q~~ai~~~---~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..+|-|-+-...+ +..+ +++++.+|+|+|||...+.++
T Consensus 16 ~iYPEQ~~YM~elKrsLDak--Gh~llEMPSGTGKTvsLLSli 56 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK--GHCLLEMPSGTGKTVSLLSLI 56 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC--CcEEEECCCCCCcchHHHHHH
Confidence 3577787766655 3333 599999999999998866654
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=97.19 E-value=0.0084 Score=58.63 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=80.9
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.+.|.|+|++.+..+... +..++..+=..|||.+++..+. ..+..+++++|+..-+....+.++......+.
T Consensus 57 Pf~L~p~Q~~i~~~~~~~---R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKN---RFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcC---eEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 378999999999887433 3567889999999998765431 23458999999988777777776644322111
Q ss_pred --cEEEEcC-chhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHHHHHHhhcc-
Q 015196 98 --QICRFTS-DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKS- 171 (411)
Q Consensus 98 --~v~~~~~-~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~~~~~~~~~- 171 (411)
..+.... ...-.+...+.|.+.+.+. +......+.++|+||+|.+... .+..+...+..
T Consensus 134 l~~~~i~~~~~~~I~l~NGS~I~~lss~~---------------~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg 198 (534)
T PHA02533 134 FLQPGIVEWNKGSIELENGSKIGAYASSP---------------DAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSG 198 (534)
T ss_pred HhhcceeecCccEEEeCCCCEEEEEeCCC---------------CccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcC
Confidence 1111111 1001112234444433321 0111356678999999998763 33333333322
Q ss_pred -ccEEEEeeecc
Q 015196 172 -HCKLGLTATLV 182 (411)
Q Consensus 172 -~~~i~lSATp~ 182 (411)
...+.+..||.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 12355566664
No 224
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0039 Score=61.27 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 31 EKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.+...+..+...+ .|+.+|.|+|||.++..++..+.
T Consensus 25 v~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 25 VRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444455443334 58899999999999988887664
No 225
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.15 E-value=0.0056 Score=56.22 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHhCCCCcceEE-EcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 27 RPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll-~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
.+...+.+...+..+...+.++ .+|+|+|||..+..++..++..++.+-+.
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 26 PAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 4444445555555443334555 89999999999888877776556555554
No 226
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.14 E-value=0.001 Score=67.27 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|.+-|++++... . ++++|.|++|||||.+...-+.++ ..++|+++.++..+.++..++.+.++
T Consensus 2 ~Ln~~Q~~av~~~--~---g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--C---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 5788999998652 2 488999999999999866655432 24799999999999999999988765
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0063 Score=56.85 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=59.0
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcCh--hhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCC
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNA--VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~--~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 113 (411)
+...++++|||+|||.++..++..+ ++++.+++-.. .-+..+...+.+.++++ +.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp---v~------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP---VK------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc---eE-------------
Confidence 3467889999999999987776433 34566555322 22222233333322221 11
Q ss_pred CcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh--HH---HHHHhhcc--ccEEEEeeeccc
Q 015196 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--FR---KVISLTKS--HCKLGLTATLVR 183 (411)
Q Consensus 114 ~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~--~~---~~~~~~~~--~~~i~lSATp~~ 183 (411)
.+-+++.+ ...+..+ .++++||+|++.+..... .. ..+..... ...+.+|||-..
T Consensus 238 ---~~~~~~~l----------~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 238 ---AIESFKDL----------KEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred ---eeCcHHHH----------HHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 01122211 1222333 568999999999987542 12 22232221 356889999863
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0051 Score=61.74 Aligned_cols=110 Identities=14% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHHh------------CCCCcceEEEcCCCCCHHHHHHHHHHhcCC--ceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 30 QEKSLSKMFG------------NGRARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 30 Q~~ai~~~~~------------~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~--~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
|.+|+.++.. +.+-.++++.+|||.|||.+|-.++..+.+ ..++-....+-.+ .....+..|-|
T Consensus 496 Qd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E--kHsVSrLIGaP 573 (786)
T COG0542 496 QDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME--KHSVSRLIGAP 573 (786)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--HHHHHHHhCCC
Confidence 7777776631 123457788999999999999988887753 5666655443222 12345666777
Q ss_pred CCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc
Q 015196 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (411)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~ 171 (411)
|..||.-.|+.. .+.+..+.+.+|.+||+.......+.-+++-+..
T Consensus 574 PGYVGyeeGG~L------------------------------TEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 574 PGYVGYEEGGQL------------------------------TEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred CCCceeccccch------------------------------hHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 777766555432 1333346788999999999888888777666643
No 229
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0024 Score=57.42 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHh-------------CCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHH
Q 015196 27 RPYQEKSLSKMFG-------------NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (411)
Q Consensus 27 ~~~Q~~ai~~~~~-------------~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~ 82 (411)
-+-|.+-++..+. -.++..+++.+|+|+|||++|=+.+.+.+-.+|=++- .+|++
T Consensus 156 L~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-SElVq 223 (406)
T COG1222 156 LDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-SELVQ 223 (406)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc-HHHHH
Confidence 3457666665531 1367899999999999999999999999877777664 44444
No 230
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.04 E-value=0.0052 Score=62.51 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----Cc-eeeCCCCHHHHHHHHHHhcC----CCCeeEEEeeccCc
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KP-MIYGATSHVERTKILQAFKC----SRDLNTIFLSKVGD 325 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~-~i~g~~~~~~r~~~~~~f~~----~~~~~vlv~t~~~~ 325 (411)
++..|.+... . +..++||+.+...++.+...+. .. ++.|. ..+..+++.|++ + +-.||++|+.+.
T Consensus 523 ~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~-~~~VL~g~~sf~ 596 (697)
T PRK11747 523 MAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEG-EGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccC-CCeEEEEecccc
Confidence 3444444444 2 3458999999999998888773 33 34453 246677776764 4 567999999999
Q ss_pred cccCccC--ccEEEEecCCCC---CH--------------------------HHHHHHhhcccccCC
Q 015196 326 NSIDIPE--ANVIIQISSHAG---SR--------------------------RQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~~--~~~vi~~~~~~~---s~--------------------------~~~~Q~~GR~~R~~~ 361 (411)
||+|+|+ +++||+..-|+. ++ ..+.|.+||..|...
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~ 663 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ 663 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Confidence 9999987 456776632322 21 123899999999874
No 231
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.013 Score=51.96 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=35.1
Q ss_pred CCChhHHHHHHH---HHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHH
Q 015196 25 QPRPYQEKSLSK---MFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ 83 (411)
Q Consensus 25 ~l~~~Q~~ai~~---~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q 83 (411)
.+...|..++.. ++... .+.++++|+|+|||..+..+.. +.+.+++++. ...|+.+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHH
Confidence 345566666643 34433 5899999999999998777653 3345665554 3344443
No 232
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.0076 Score=60.26 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 33 ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+...+..+. ++..|+++|.|+|||.++..++..++
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444455433 33458899999999999988887665
No 233
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.01 E-value=0.0011 Score=58.08 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred ceEEEcCCCCCHHHHHHHHH-----HhcCCceEEEEcChhhH-----HHHHHHHHHHhCCCC---CcEEEEcCchhhhhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAA-----CRIKKSCLCLATNAVSV-----DQWAFQFKLWSTIQD---DQICRFTSDSKERFR 111 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~-----~~~~~~~lil~P~~~l~-----~q~~~~~~~~~~~~~---~~v~~~~~~~~~~~~ 111 (411)
-+++.+|||+||+-.--.++ .-....|++++|.+..+ .-|...+.+ .+... ..+.-.++...
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~E-gNY~~~~~gTi~P~t~t~~---- 163 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCE-GNYDCGPDGTIVPQTGTFR---- 163 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHh-cCCCCCCCCeecccccccc----
Confidence 35788999999997644433 22347899999999764 335555544 11111 11222222211
Q ss_pred CCCcEEEEecceecccCCCC-hhhHHHHHHHhcCCccEEEEecCCC
Q 015196 112 GNAGVVVTTYNMVAFGGKRS-EESEKIIEEIRNREWGLLLMDEVHV 156 (411)
Q Consensus 112 ~~~~I~v~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~lvIiDE~H~ 156 (411)
.+.+-+||+.+.....-. +.....+.......+..||+|||=.
T Consensus 164 --P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe 207 (369)
T PF02456_consen 164 --PKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECME 207 (369)
T ss_pred --ccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHH
Confidence 345556666554432211 1122333444457888999999954
No 234
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.00 E-value=0.01 Score=49.82 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=33.8
Q ss_pred eEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.++.+|+|+|||..++..+. +.+.++++++... -.+++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~-~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE-SPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHc
Confidence 57899999999999887654 4467899988643 466666666654
No 235
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0074 Score=58.82 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 32 ~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.+...+..+. ++..++.+|.|+|||.+|..++..++
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444454433 33458999999999999988887664
No 236
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0043 Score=63.19 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=53.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecce
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~ 123 (411)
...++.+|||+|||.+|-.++..++.+++.+ ...+..+. ....++.|.++..++.-.+
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i-d~se~~~~--~~~~~LiG~~~gyvg~~~~------------------- 546 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRF-DMSEYMER--HTVSRLIGAPPGYVGFDQG------------------- 546 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEe-echhhccc--ccHHHHcCCCCCccccccc-------------------
Confidence 4578899999999999988887777554443 22221111 1234444433222211000
Q ss_pred ecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
..+.+.+.....++|++||++.+....+..++..+
T Consensus 547 -----------g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 547 -----------GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred -----------chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 01112233355689999999999887666665554
No 237
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0046 Score=62.95 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHhCCCCcce-EEEcCCCCCHHHHHHHHHHhcC
Q 015196 34 LSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 34 i~~~~~~~~~~~~-ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+..++..+.-.+. ++++|+|+|||.+|..++..++
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3334444333454 8999999999999998887775
No 238
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.95 E-value=0.0014 Score=66.02 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=55.6
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..|.+-|++|+..- . .+.+|.|+.|||||.+++.-+..+ ..++|+++.++..+..+.+++...++...
T Consensus 195 ~~L~~~Q~~av~~~---~--~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~ 269 (684)
T PRK11054 195 SPLNPSQARAVVNG---E--DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTED 269 (684)
T ss_pred CCCCHHHHHHHhCC---C--CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCC
Confidence 57899999998532 2 378999999999999977765332 25899999999999999988888766333
Q ss_pred CcEEEE
Q 015196 97 DQICRF 102 (411)
Q Consensus 97 ~~v~~~ 102 (411)
..++.+
T Consensus 270 v~v~TF 275 (684)
T PRK11054 270 ITARTF 275 (684)
T ss_pred cEEEeH
Confidence 334333
No 239
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0081 Score=59.25 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 29 ~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+-.+.+..++..+. ++..++.+|.|+|||.+|..++..++
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444555555443 34558899999999999988887765
No 240
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.90 E-value=0.0088 Score=59.82 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhh-cCCCeEEEEecChhHHHHHHHHh------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 254 RACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKL------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 254 ~~~~~l~~~~~~-~~~~~~ivf~~~~~~~~~l~~~l------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
...+.++...+. .-..-+++|-.--..+-.|...+ .+--.|......+..++.+....+ ..++|++
T Consensus 628 ~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g-v~kii~s 706 (1282)
T KOG0921|consen 628 GLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG-VTKIILS 706 (1282)
T ss_pred HHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc-ccccccc
Confidence 344444443331 11334677766555544444444 123356666666667776666665 7788888
Q ss_pred eccCccccCccCccEEEEe-----------------cCCCCCHHHHHHHhhcccccCC
Q 015196 321 SKVGDNSIDIPEANVIIQI-----------------SSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~-----------------~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|....+.+.+-++..|+.. ..-|.|....+|+.||++|..+
T Consensus 707 tniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 707 TNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred cceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 8888888877664433321 1123466678999999999985
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.87 E-value=0.0081 Score=52.16 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 33 ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+..++........++.+|+|+|||.++..+....
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33333334445688999999999999988776544
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.87 E-value=0.019 Score=50.20 Aligned_cols=47 Identities=26% Similarity=0.150 Sum_probs=31.4
Q ss_pred hhHHHHHHHHH---hCC--CCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEE
Q 015196 28 PYQEKSLSKMF---GNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (411)
Q Consensus 28 ~~Q~~ai~~~~---~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil 74 (411)
+.|+.++..+. .+. .....++.+++|+|||.++..++..+ +.+++++
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45666766553 221 12367899999999999988877554 4556555
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.85 E-value=0.018 Score=53.35 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++...+.+..++..+...+.++.+|+|+|||.++..++..+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 555666666666665334789999999999999888776553
No 244
>PRK08727 hypothetical protein; Validated
Probab=96.85 E-value=0.025 Score=49.35 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=22.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...++.+|+|+|||-.+..++. ..+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3588999999999988766543 2345666654
No 245
>PRK04195 replication factor C large subunit; Provisional
Probab=96.82 E-value=0.016 Score=56.46 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHhC----CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 26 PRPYQEKSLSKMFGN----GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..+.+.+.+..++.. ...+.+++.+|+|+|||.++..++..++..++.+-+
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 345555555555432 225688999999999999999998888766666544
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.82 E-value=0.013 Score=51.10 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=25.6
Q ss_pred HHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 37 MFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 37 ~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
+.........++++|+|+|||-.+..+... .+.+++++.
T Consensus 39 ~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 39 ALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 333333357899999999999887665543 234566554
No 247
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.012 Score=51.57 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=38.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHH
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
-+..++.+|+|+||++.|-+.+-+.+ ..++-+.+..|+..|+.+=.+
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH
Confidence 35678899999999999888888887 667777778899998876554
No 248
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.82 E-value=0.06 Score=58.82 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH---HHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~---~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..|.+-|++|+..++...+ +-++|.+..|+|||.+.-.+ +..+ +..++.++|+-..+..+.+ .|+..
T Consensus 834 ~~Lt~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH
Confidence 4799999999999987532 46788999999999985333 2222 3578899999876665432 13321
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc--ccE
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS--HCK 174 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~--~~~ 174 (411)
..+ .+|...... ......-.....++||+||+-.+....+..++..+.. .++
T Consensus 908 ~TI----------------------asfL~~~~~----~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garv 961 (1623)
T PRK14712 908 QTL----------------------ASFLHDTQL----QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 961 (1623)
T ss_pred hhH----------------------HHHhccccc----hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEE
Confidence 111 111100000 0000000012457999999999999888777776643 344
Q ss_pred EEE
Q 015196 175 LGL 177 (411)
Q Consensus 175 i~l 177 (411)
|++
T Consensus 962 VLV 964 (1623)
T PRK14712 962 VAS 964 (1623)
T ss_pred EEE
Confidence 444
No 249
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.81 E-value=0.013 Score=66.15 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=79.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|.+-|++++..++.+. .+-.+|.++.|+|||.++-.++ ...+.+++.++|+...+..+.++. +.....+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI----PRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchhhhH
Confidence 4789999999999998763 2467888999999999865543 445779999999987666655432 2111111
Q ss_pred EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhc--cccEEEE
Q 015196 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK--SHCKLGL 177 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~--~~~~i~l 177 (411)
..+-.. .. ......|.+.|... .-.....++|||||+-.+.......++.... ..++|++
T Consensus 502 ~~~l~~----l~--~~~~~~tv~~fl~~------------~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 502 ITWVKN----LF--NDDQDHTVQGLLDK------------SSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred HHHHHh----hc--ccccchhHHHhhcc------------cCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEE
Confidence 000000 00 00001111111100 0001345799999999999998888887653 3455555
Q ss_pred e
Q 015196 178 T 178 (411)
Q Consensus 178 S 178 (411)
.
T Consensus 564 G 564 (1960)
T TIGR02760 564 N 564 (1960)
T ss_pred c
Confidence 3
No 250
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.81 E-value=0.017 Score=56.75 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=78.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHH-----hcCCceEEEEcChhhHHHHHHHHHHHhC--CCCCcEEEEcCchhh-hh-cCC
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAAC-----RIKKSCLCLATNAVSVDQWAFQFKLWST--IQDDQICRFTSDSKE-RF-RGN 113 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~--~~~~~v~~~~~~~~~-~~-~~~ 113 (411)
++..++..|=-.|||.++...+. ..+.+++|.+|.+...+..++++..++. .++..+....+.... .+ ++.
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG~ 333 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPDGS 333 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecCCC
Confidence 45678899999999997553332 3477999999999999998888877543 122223333221110 01 111
Q ss_pred -CcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh--ccccEEEEeeec
Q 015196 114 -AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--KSHCKLGLTATL 181 (411)
Q Consensus 114 -~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~--~~~~~i~lSATp 181 (411)
+.|.+.+- +.. ..+....++++|+|||+.+....+..++-.+ .+.++|.+|.|-
T Consensus 334 kstI~FaSa---rnt-----------NsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 334 RSTIVFASS---HNT-----------NGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred ccEEEEEec---cCC-----------CCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCC
Confidence 23444311 100 1112368899999999999999888776544 345888988764
No 251
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.042 Score=52.00 Aligned_cols=92 Identities=8% Similarity=0.100 Sum_probs=62.9
Q ss_pred CCeEEEEecChhHHHHHHHHhC---C--ceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC--ccccCccCccEEEEec
Q 015196 268 GDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG--DNSIDIPEANVIIQIS 340 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l~---~--~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~--~~Gid~~~~~~vi~~~ 340 (411)
...++|+.++.-.--++..+++ + ..++.-.+...-...-+.|-.| ...+|+-|.-+ -+-.++.++..||++.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehhhhhhhhheecceeeEEEec
Confidence 3468999998877666766663 2 2344444555555556778887 88999988443 4567889999999985
Q ss_pred CCCCCHH---HHHHHhhcccccCC
Q 015196 341 SHAGSRR---QEAQRLGRILRAKG 361 (411)
Q Consensus 341 ~~~~s~~---~~~Q~~GR~~R~~~ 361 (411)
+| .++. +++.+.+|..-.|.
T Consensus 631 pP-~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 631 PP-NNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred CC-CCcHHHHHHHhhhhhhhccCC
Confidence 54 4654 45788888776664
No 252
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.76 E-value=0.0038 Score=54.56 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=54.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceec
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~ 125 (411)
.++.|++|+|||......+... ..+....|+..+...|. . .. .+..+.|.+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~-------------------~~~~~~~v~s~~ 54 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWL----P--DP-------------------PSKSVRTVDSFL 54 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccc----c--cc-------------------CCccccEEeEhh
Confidence 3688999999999877777665 22223335455555544 0 00 112223333332
Q ss_pred ccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecc
Q 015196 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (411)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~ 182 (411)
.... .....+.+|+||+..+......-++....... +.+-|=|.
T Consensus 55 ~~~~------------~~~~~~~liiDE~~~~~~g~l~~l~~~~~~~~-~~l~GDp~ 98 (234)
T PF01443_consen 55 KALV------------KPKSYDTLIIDEAQLLPPGYLLLLLSLSPAKN-VILFGDPL 98 (234)
T ss_pred hccc------------ccCcCCEEEEeccccCChHHHHHHHhhccCcc-eEEEECch
Confidence 2210 01246899999999999876665455444444 44445554
No 253
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.76 E-value=0.074 Score=58.90 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---c----CCceEEEEcChhhHHHHHHHHHHHhCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---I----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 96 (411)
..|.+-|++|+..++.+. .+-.+|.+..|+|||.+.-.++.. + +.+++.++|+-..+..+.+ .|+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcch
Confidence 578999999999998753 147788999999999985444322 1 3468889999876665432 23321
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc--ccE
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS--HCK 174 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~--~~~ 174 (411)
. |..+|....... ... ........++|||||+-.+.......++..+.. .++
T Consensus 1040 ~----------------------TI~s~L~~~~~~---~~~-~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garv 1093 (1747)
T PRK13709 1040 Q----------------------TLASFLHDTQLQ---QRS-GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 1093 (1747)
T ss_pred h----------------------hHHHHhcccccc---ccc-ccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEE
Confidence 1 111111000000 000 000012447999999999999988888877653 344
Q ss_pred EEE
Q 015196 175 LGL 177 (411)
Q Consensus 175 i~l 177 (411)
|++
T Consensus 1094 VLV 1096 (1747)
T PRK13709 1094 VSS 1096 (1747)
T ss_pred EEe
Confidence 443
No 254
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.75 E-value=0.009 Score=53.12 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=67.6
Q ss_pred CCCCCChhHHHHHHHH---HhCC---CCcceEEEcCCCCCHHHHHHHHHHhcC---------Cc-eEEEEcChhhHHHHH
Q 015196 22 PHAQPRPYQEKSLSKM---FGNG---RARSGIIVLPCGAGKSLVGVSAACRIK---------KS-CLCLATNAVSVDQWA 85 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~---~~~~---~~~~~ll~~~tG~GKT~~a~~~~~~~~---------~~-~lil~P~~~l~~q~~ 85 (411)
+.+.-+|-=+++++.+ +..+ ...+.+++++||-|||.++-....... .+ +++-+|...-...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4456667667777665 3322 345789999999999998766553221 12 344456666667777
Q ss_pred HHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
..+...++.+...- . +... ........+...+..++||||.|++...
T Consensus 114 ~~IL~~lgaP~~~~--------------~-----~~~~---------~~~~~~~llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 114 SAILEALGAPYRPR--------------D-----RVAK---------LEQQVLRLLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHHHHhCcccCCC--------------C-----CHHH---------HHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence 77777666542210 0 0000 0112335555678889999999998754
No 255
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.75 E-value=0.01 Score=60.85 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|+.+.+-+-.++......+.++++|+|+|||.++-.++.++
T Consensus 187 r~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 187 REDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33333333333434445688999999999999987776544
No 256
>PRK08116 hypothetical protein; Validated
Probab=96.73 E-value=0.033 Score=49.62 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~ 86 (411)
..++++++|+|||..|..++..+ +.+++++ +...+...+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHH
Confidence 58899999999999988877654 4455544 44444444333
No 257
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.011 Score=58.78 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 32 KSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 32 ~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.+...+..+.-.+ .++.+|.|+|||.+|..++..+.
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34444455443334 47899999999999988877665
No 258
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.023 Score=49.78 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=28.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~ 86 (411)
.+.++.+|+|+|||..|.+++..+ +.+++++ +..+|..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHH
Confidence 478899999999999988876554 3445444 44555555433
No 259
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.018 Score=56.01 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred HHHHHHHH---HhCCCCcce-EEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKM---FGNGRARSG-IIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~---~~~~~~~~~-ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..+...+ +..+...+. ++.+|+|+|||.+|..++..+.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44444433 444433344 8999999999999888876653
No 260
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.70 E-value=0.015 Score=53.17 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
..+.++++|+|+|||..+..++..++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999988777766543
No 261
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.69 E-value=0.0093 Score=47.35 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=46.2
Q ss_pred eeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCcc--EEEEecCCCC---C----------------------
Q 015196 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN--VIIQISSHAG---S---------------------- 345 (411)
Q Consensus 293 i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~--~vi~~~~~~~---s---------------------- 345 (411)
+..+....+...+++.|++..+-.||+++..+.||+|+|+-. ++|+..-|+. +
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333344445788899998852237999987799999999754 4555421211 1
Q ss_pred -----HHHHHHHhhcccccCC
Q 015196 346 -----RRQEAQRLGRILRAKG 361 (411)
Q Consensus 346 -----~~~~~Q~~GR~~R~~~ 361 (411)
...+.|.+||+.|..+
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~ 127 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGAN 127 (141)
T ss_pred HHHHHHHHHHHHhCccccCcC
Confidence 1234899999999874
No 262
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.67 E-value=0.032 Score=57.12 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=68.2
Q ss_pred HHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----------CceeeCCCCHHHHHHHHHHhcCC---CCeeEEEee--c
Q 015196 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------KPMIYGATSHVERTKILQAFKCS---RDLNTIFLS--K 322 (411)
Q Consensus 259 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----------~~~i~g~~~~~~r~~~~~~f~~~---~~~~vlv~t--~ 322 (411)
|.+... ...+.++||.++...++.+.+.+. ..++.......++..+++.|+.. +.-.||+++ +
T Consensus 514 i~~~~~-~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 514 LVEFSK-IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHhh-cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 334444 345679999999999888877652 22333223335788899999652 144699998 8
Q ss_pred cCccccCccCc--cEEEEecCCCC---C------------------H---------HHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEA--NVIIQISSHAG---S------------------R---------RQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~--~~vi~~~~~~~---s------------------~---------~~~~Q~~GR~~R~~~ 361 (411)
.+.||+|+++- .+||+..-|+. + . ....|.+||+.|-..
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 99999999874 56666533321 1 0 234899999999885
No 263
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.66 E-value=0.0033 Score=65.02 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=80.2
Q ss_pred CCCeEEEEecChhHHHHHHHHhC---Ccee-eCCCCHHHHHHHHHHhcCCCCeeEEEe-eccCccccCccCccEEEEecC
Q 015196 267 RGDKIIVFADNLFALTEYAMKLR---KPMI-YGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISS 341 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l~---~~~i-~g~~~~~~r~~~~~~f~~~~~~~vlv~-t~~~~~Gid~~~~~~vi~~~~ 341 (411)
...++|+|+..-...+-+...+. +..+ .|.. .....-+..|++ ++++.. ++.++-|+|+-++.+|++. .
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t--~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~-e 1293 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET--EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLV-E 1293 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC--cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhhee-c
Confidence 35789999998777666666552 2222 2221 122333455555 565444 8999999999999999998 4
Q ss_pred CCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 342 ~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
|-.++..-.|.+||++|.| +.++.+++.++-.+|.|+.+-
T Consensus 1294 PiLN~~~E~QAigRvhRiG-----------Q~~pT~V~~fiv~~TvEe~Il 1333 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIG-----------QKRPTFVHRFIVNETVEENIL 1333 (1394)
T ss_pred cccCchHHHhhhhhhhhcc-----------cccchhhhhhhhccchHHHHH
Confidence 5568999999999999999 566799999999999998765
No 264
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.65 E-value=0.02 Score=52.84 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHh-----CCCCcceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 26 l~~~Q~~ai~~~~~-----~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
-++...+.+..++. +....+.++.+|+|+|||.++..++..++..+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34445554544432 23346889999999999999998887776443
No 265
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.026 Score=55.41 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.+.+...+..+...+ .++.+|+|+|||.+|..++..+.
T Consensus 24 v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 24 VVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3334444455443334 47899999999999988877664
No 266
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.63 E-value=0.048 Score=53.87 Aligned_cols=141 Identities=11% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH---Hh-cCCceEEEEcChhhHHHHHHHHHHHhCC------
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CR-IKKSCLCLATNAVSVDQWAFQFKLWSTI------ 94 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~------ 94 (411)
-+-|.-.+-+++++........++.+|=|.|||.+...++ .. .+.+++|.+|...-+++.++++...+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 3455555666666654444578889999999998754332 22 4678999999999888888877766531
Q ss_pred -CCC-cEEEEcCchhh-hhc-------CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH
Q 015196 95 -QDD-QICRFTSDSKE-RFR-------GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (411)
Q Consensus 95 -~~~-~v~~~~~~~~~-~~~-------~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~ 164 (411)
+.. .+....++... .+. +.+.|.+++... .......++++|+|||+.+..+.+..
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~---------------~s~RG~~~DLLIVDEAAfI~~~~l~a 313 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSP---------------NAARGQNPDLVIVDEAAFVNPGALLS 313 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccC---------------CCcCCCCCCEEEEECcccCCHHHHHH
Confidence 111 11111111110 000 001222221110 11122467899999999999988887
Q ss_pred HHHhhc--cccEEEEeee
Q 015196 165 VISLTK--SHCKLGLTAT 180 (411)
Q Consensus 165 ~~~~~~--~~~~i~lSAT 180 (411)
++-.+. ..+++.+|.+
T Consensus 314 IlP~l~~~~~k~IiISS~ 331 (752)
T PHA03333 314 VLPLMAVKGTKQIHISSP 331 (752)
T ss_pred HHHHHccCCCceEEEeCC
Confidence 665554 3456666544
No 267
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.63 E-value=0.0042 Score=63.28 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
|.|-|++++... . .+++|.|++|||||.+.+.-+.++ .+++|+++.++..+.++.+++.+.++.
T Consensus 2 Ln~~Q~~av~~~--~---~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~ 72 (664)
T TIGR01074 2 LNPQQQEAVEYV--T---GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK 72 (664)
T ss_pred CCHHHHHHHhCC--C---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc
Confidence 678898888642 2 489999999999999876654332 257999999999999999999887653
No 268
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.028 Score=52.67 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHHHHH---HHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSK---MFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~---~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..++.. .+..+. ++..++.+|+|+|||.+|..++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4444443 344332 33458999999999999988887765
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.011 Score=48.10 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=26.9
Q ss_pred eEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhH
Q 015196 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSV 81 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~ 81 (411)
.++.+++|+|||.++..++... +.+++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 5789999999999987776544 56788877655433
No 270
>PF13173 AAA_14: AAA domain
Probab=96.58 E-value=0.023 Score=44.38 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=25.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC--CceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~ 75 (411)
...++.+|.|+|||.++...+..+. .+++++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~ 36 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYIN 36 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeec
Confidence 3678899999999999988887765 5666664
No 271
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.57 E-value=0.026 Score=53.05 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHHHHHh----CCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~----~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+.-|+.|.+.+...+. +..+...++.+|+|+|||.++-.++.++
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45668889888877754 3334578999999999999987776543
No 272
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.57 E-value=0.014 Score=55.18 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+.+.++.+|+|+|||.+|-.++.+++..++.+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 45678999999999999998888888766665543
No 273
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.021 Score=56.71 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHhCCCC-cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 34 LSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 34 i~~~~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+..++..+.- +..++++|.|+|||.+|..++..++
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3334444432 3458899999999999988876654
No 274
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.011 Score=51.66 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=25.6
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~l 72 (411)
...++++.+|+|.|||..|..++.+++.++-
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 4568999999999999999888888875443
No 275
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.57 E-value=0.013 Score=46.64 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCCe---eEEEeecc--CccccCccCc--cEEEEecCCCC---CH------------------------
Q 015196 301 ERTKILQAFKCSRDL---NTIFLSKV--GDNSIDIPEA--NVIIQISSHAG---SR------------------------ 346 (411)
Q Consensus 301 ~r~~~~~~f~~~~~~---~vlv~t~~--~~~Gid~~~~--~~vi~~~~~~~---s~------------------------ 346 (411)
+...+++.|++. .- .||+++.. +.||+|+|+- +.||+..-|+. ++
T Consensus 32 ~~~~~l~~f~~~-~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 32 ETEELLEKYSAA-CEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred hHHHHHHHHHHh-cCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 446788889875 32 58888765 8999999985 45665422211 11
Q ss_pred ---HHHHHHhhcccccCC
Q 015196 347 ---RQEAQRLGRILRAKG 361 (411)
Q Consensus 347 ---~~~~Q~~GR~~R~~~ 361 (411)
..+.|.+||+.|...
T Consensus 111 ~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 111 DAMRALAQAIGRAIRHKN 128 (142)
T ss_pred HHHHHHHHHhCccccCcc
Confidence 123899999999885
No 276
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.014 Score=51.84 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=26.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQ 83 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q 83 (411)
.+.++.+++|+|||..+.+++..+ +..++++. ...+..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHH
Confidence 578999999999999987776543 34555554 3444443
No 277
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.024 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++..++.+|.|+|||.+|..++..+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3457789999999999998887654
No 278
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.023 Score=56.18 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 31 EKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 31 ~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.+...+..+ -....|+.+|.|+|||.+|..++..+.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 44455555543 245677899999999999988887664
No 279
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.02 Score=55.57 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHH---Hh-CCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKM---FG-NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~---~~-~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..++..+ +. +..++..++.+|.|+|||.+|..++..++
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 55555443 22 33345788999999999999988887664
No 280
>CHL00181 cbbX CbbX; Provisional
Probab=96.54 E-value=0.016 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
+.++.+|+|+|||.+|-.++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999998877554
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.017 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 31 EKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 31 ~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+.+...+..+ -++..++.+|.|+|||.+|..++..+
T Consensus 22 v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 22 VRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 33443334433 34578899999999999988877655
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.024 Score=52.76 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=37.2
Q ss_pred CCCCCCChhHHHHHHHHH----hCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 21 KPHAQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~----~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+..+.-|+-|.+.+...+ .+..+.++++.++||+|||.++-.++.++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 334677999988887654 445567799999999999999888876653
No 283
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.035 Score=51.09 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++|||+...+.+... .-++..++.+|.|.||+.+|..++..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999988643 334566789999999999988887554
No 284
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.50 E-value=0.02 Score=58.88 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=52.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEeccee
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l 124 (411)
..++.+|||+|||.+|-.++..++..++.+- ..+..+. .......|-++..++ ++
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d-~se~~~~--~~~~~lig~~~gyvg--------------------~~-- 540 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFD-MSEYMEK--HTVSRLIGAPPGYVG--------------------FE-- 540 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEe-Cchhhhc--ccHHHHhcCCCCCcc--------------------cc--
Confidence 4688999999999999888877765544443 2221111 112222222211111 00
Q ss_pred cccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhc
Q 015196 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~ 170 (411)
....+...+....+++|++||++.+....+..++..+.
T Consensus 541 --------~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 541 --------QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --------hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 00122334444667899999999998876666666553
No 285
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.48 E-value=0.083 Score=43.14 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred HHHHHHHH---HhCCC-CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~---~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|.++++.+ +..+. ++..++.+|.|+||+..|...+..+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 44455444 44432 3456889999999999998888665
No 286
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.034 Score=55.00 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 31 EKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.+...+..+...+ .++.+|.|+|||.+|..++..+.
T Consensus 22 ~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 22 TEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444455443334 58899999999999988887665
No 287
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.43 E-value=0.024 Score=56.08 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=91.2
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHH-HHHHHHhCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWA-FQFKLWSTIQ 95 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~-~~~~~~~~~~ 95 (411)
+......|||.+..+.+-... -..+.+..++-+|||.+++..+.. -...+|++.|+..+++.|. .+|...+.-.
T Consensus 12 ~w~~~~~Py~~eimd~~~~~~-v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 12 PWRTDRTPYLREIMDALSDPS-VREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCCCCChhHHHHHHhcCCcC-ccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 344588999999999976543 457888999999999988887643 3469999999999999987 4455433211
Q ss_pred CCcEEEEcC-------c-hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------h
Q 015196 96 DDQICRFTS-------D-SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------M 161 (411)
Q Consensus 96 ~~~v~~~~~-------~-~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~ 161 (411)
+.--..+.. + ..........+.++...+-. .+......++++||+..+... .
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~--------------~l~s~~~r~~~~DEvD~~p~~~~~eGdp 156 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPS--------------NLRSRPARYLLLDEVDRYPDDVGGEGDP 156 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCc--------------ccccCCcCEEEEechhhccccCccCCCH
Confidence 110111111 0 00011123445555443321 222466789999999999632 1
Q ss_pred H---HHHHHhhccccEEEEeeecccCc
Q 015196 162 F---RKVISLTKSHCKLGLTATLVRED 185 (411)
Q Consensus 162 ~---~~~~~~~~~~~~i~lSATp~~~~ 185 (411)
. ..-...+.....+.+..||....
T Consensus 157 ~~la~~R~~tf~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 157 VELAEKRTKTFGSNRKILRISTPTIEG 183 (557)
T ss_pred HHHHHHHHhhhccCcEEEEeCCCCCCC
Confidence 1 11122223445677888987653
No 288
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.031 Score=53.03 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 32 ~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.+...+.++. ++..++++|+|+|||.+|..++..+.
T Consensus 26 ~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 26 RTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred HHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444455433 33477899999999999988887664
No 289
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.40 E-value=0.032 Score=48.48 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hc-CCceEEEEcChhhHHHHHHHHHHH
Q 015196 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RI-KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 34 i~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~-~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
++.++.++ .....++.+++|+|||..++..+. .. +.++++++-... .+++.+.+..+
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~-~~~l~~~~~s~ 70 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP-PEELIENMKSF 70 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--HHHHHHHHHTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC-HHHHHHHHHHc
Confidence 44555432 234677889999999999887653 34 789999985443 56777777654
No 290
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.40 E-value=0.02 Score=59.58 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=50.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~ 122 (411)
..++.+|||+|||.+|-.++..+. ...++.....+..+ .....++.|.++..++.-.+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~--~~~~~~l~g~~~gyvg~~~~------------------ 657 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE--AHTVSRLKGSPPGYVGYGEG------------------ 657 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh--hhhhccccCCCCCccccccc------------------
Confidence 368899999999999887766553 23444333111111 11122222222221111000
Q ss_pred eecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
..+...+....+++|++||++......+..++..+
T Consensus 658 ------------g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~l 692 (852)
T TIGR03345 658 ------------GVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVF 692 (852)
T ss_pred ------------chHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHh
Confidence 01223444567889999999988877666555554
No 291
>PRK06893 DNA replication initiation factor; Validated
Probab=96.39 E-value=0.032 Score=48.50 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=22.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
..++++|+|+|||-.+..++... +.++.++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 46899999999999877776443 34555554
No 292
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.031 Score=57.60 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.+.+...+..+...+ .|+.+|.|+|||.++..++..+.
T Consensus 23 v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444455543334 68999999999999988887664
No 293
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.38 E-value=0.015 Score=54.84 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.++.+++.+|+|+|||.++-.++..++..++.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 45788999999999999998888888776666654
No 294
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.046 Score=49.88 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHh---C-CCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFG---N-GRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~---~-~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++|||+.....+.. . .-++..++.+|.|.||+.+|...+..+
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 458999888888743 2 234456689999999999988887554
No 295
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.34 E-value=0.009 Score=61.29 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.|.|-|++++... . .+++|.|++|||||.+...-++++ ..++|+++-|+..+.++.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~~~--~---g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 9 SLNDKQREAVAAP--L---GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred hcCHHHHHHHhCC--C---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 5889999998642 1 488999999999999876655432 257999999999999999999887653
No 296
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.017 Score=55.73 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+++.+++.+|+|+|||..|-+++.+++-+++=+..
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA 256 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA 256 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecc
Confidence 57788999999999999999999999977765543
No 297
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.33 E-value=0.099 Score=49.66 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=33.8
Q ss_pred CCCCCCChhHHHHHHHHH----hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 21 KPHAQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~----~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+..+.-|+-|.+.+...+ .+..+.++++.+|+|+|||.++-.++.++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555777877776664 22334578999999999999988877654
No 298
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.30 E-value=0.076 Score=48.77 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++.+.+.+...+..+...+.++.+|+|+|||.++-.++..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33444455555555444468999999999999988777665
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.29 E-value=0.048 Score=50.92 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=58.0
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCch
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~ 106 (411)
.-++.++.++ ...-.++.+++|+|||..++.++... +.+++++.... -..|......++ +....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rl-g~~~~--------- 137 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRL-GISTE--------- 137 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHc-CCCcc---------
Confidence 3445555442 22355778999999999988776433 46888887643 355655554443 33211
Q ss_pred hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 107 ~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
++.+.... ....+...+...++++||+|+++.+.
T Consensus 138 --------~l~l~~e~----------~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 --------NLYLLAET----------NLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------cEEEEccC----------cHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 12222111 12344455556788999999998874
No 300
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.28 E-value=0.035 Score=52.70 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-+.+.|.+.+..++..+ .+=.++.+|||||||.+...++..++
T Consensus 241 g~~~~~~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 241 GMSPFQLARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred CCCHHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 45888999999988764 23456679999999999888877665
No 301
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.045 Score=54.59 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 33 ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+...+..+. ++..++.+|.|+|||.+|..++..+.
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3334444443 34568999999999999988887665
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=96.25 E-value=0.065 Score=49.20 Aligned_cols=45 Identities=20% Similarity=0.038 Sum_probs=28.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcC---hhhHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN---AVSVDQWAFQF 88 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~---~~l~~q~~~~~ 88 (411)
.-.++.+++|+|||.+...++.. .+.+++++... ....+||....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHH
Confidence 45677899999999986666543 34566666533 34456654433
No 303
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.25 E-value=0.0092 Score=61.25 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=51.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|.|-|++++... ..+++|.|.+|||||.+...-+.++ ..++|+++.|+..+.++..++.+..+
T Consensus 4 ~Ln~~Q~~av~~~-----~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP-----PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC-----CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4889999998642 2489999999999999966655432 24899999999999999999988765
No 304
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.22 E-value=0.017 Score=54.10 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
+.+.++.+|+|+|||.++-.++.+++..++-+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 457899999999999999988888876655443
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.20 E-value=0.054 Score=52.41 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=26.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQW 84 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~ 84 (411)
.+.++.+|+|+|||..+..+..++ +.+++++. ...+..++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHH
Confidence 467899999999999977776544 33455554 34444433
No 306
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.20 E-value=0.019 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=18.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
.+.++.+|+|+|||.+|..++.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999866543
No 307
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.20 E-value=0.029 Score=63.31 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=71.6
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHH---HHH----hcCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS---AAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~---~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
....|.+-|++|+..++.+.. +-++|.++.|+|||.+... .+. ..+.+++.++|+-..+.++.+ .|+
T Consensus 1016 ~~~~Lt~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~ 1089 (1960)
T TIGR02760 1016 LLERLTHGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGV 1089 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCC
Confidence 346899999999999987532 3567789999999998732 222 235689999999876665532 233
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
....+ .+|....... . ..-.....+++|+||+-.+....+..++...
T Consensus 1090 ~a~Ti----------------------~s~l~~~~~~----~--~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~ 1136 (1960)
T TIGR02760 1090 QAQTL----------------------DSFLTDISLY----R--NSGGDFRNTLFILDESSMVSNFQLTHATELV 1136 (1960)
T ss_pred chHhH----------------------HHHhcCcccc----c--ccCCCCcccEEEEEccccccHHHHHHHHHhc
Confidence 21111 1111000000 0 0000134579999999999999888887664
No 308
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.20 E-value=0.035 Score=57.80 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|+-+.+.+..++......+.++++|+|+|||.++-.++...
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555556555555455688999999999999987776543
No 309
>PRK05642 DNA replication initiation factor; Validated
Probab=96.18 E-value=0.065 Score=46.78 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=22.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
...++++|+|+|||-.+..+..+ .+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 46789999999999886655432 345676665
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.17 E-value=0.073 Score=44.72 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-+...++.+|+|+|||..+..++..+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 345688899999999999888876653
No 311
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.17 E-value=0.071 Score=50.84 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=23.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~ 75 (411)
...++.+|+|+|||..+..+...+ +.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 357899999999999987765443 34566664
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.051 Score=53.23 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 34 i~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+...+..+. ++..++.+|.|+|||.+|..++..+.
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444432 23467899999999999988887664
No 313
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.14 E-value=0.038 Score=48.08 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=32.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
...++.+++|+|||..++..+.. .+.++++++..-. ..+..+.+.+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~ 73 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMS 73 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHH
Confidence 46788999999999998766543 3568888885443 4555555544
No 314
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.13 E-value=0.076 Score=54.13 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=33.0
Q ss_pred CCCCCChhHHHHHHHHHh----CCCCcce-EEEcCCCCCHHHHHHHHHHhc
Q 015196 22 PHAQPRPYQEKSLSKMFG----NGRARSG-IIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~----~~~~~~~-ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+.-|+-|.+.+..++. +..+.++ +|.++||+|||.++-.++.++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445668999988877653 2233344 589999999999987776544
No 315
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.087 Score=49.00 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=28.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcC---hhhHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN---AVSVDQWAF 86 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~---~~l~~q~~~ 86 (411)
+...+.+|+|+|||.++..++..+ +.++.++..- ...++||..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH
Confidence 567889999999999977775443 4466666542 234555553
No 316
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.11 E-value=0.12 Score=51.61 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred HHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEcChhhHHHHHHHHHHHh
Q 015196 30 QEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 30 Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
|.+.+..+... ......++.|+||+|||+.++.++.. .+++++|++|+++|.+|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 66666666432 12247888999999999998877532 36799999999999999998877654
No 317
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.083 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++-.+.+...+..+. ++..++++|.|+|||.+|-.++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 22 EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444444454432 33467799999999999877776543
No 318
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.09 E-value=0.064 Score=51.54 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=59.3
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCch
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~ 106 (411)
.-++.++.++ ...-.++.+++|+|||..++.++... +.+++++.-.- -.+|+.....++ +.....
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rl-g~~~~~-------- 136 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERL-GLPSDN-------- 136 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHc-CCChhc--------
Confidence 3455556543 22355778999999999988776543 57899988643 355665554442 332111
Q ss_pred hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 107 ~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
+.+.... ....+...+...++++||+|+.+.+.
T Consensus 137 ---------l~~~~e~----------~l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 ---------LYLLAET----------NLEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred ---------EEEeCCC----------CHHHHHHHHHhhCCCEEEEechhhhc
Confidence 2222111 12344555556688999999999765
No 319
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.08 E-value=0.09 Score=50.52 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=50.3
Q ss_pred CCCCCChhHHHHHHHHHhCC-------CCcceEEEcCCCCCHHHHHHHHHH-------hcCCceEEEEcChhhHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGNG-------RARSGIIVLPCGAGKSLVGVSAAC-------RIKKSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~-------~~~~~ll~~~tG~GKT~~a~~~~~-------~~~~~~lil~P~~~l~~q~~~~ 87 (411)
..+.+-|||+-++..+++-. ....+++..|=+-|||.+++.+.. ..+..+.+++|+..-+.+..+.
T Consensus 58 ~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 58 FPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred CccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHH
Confidence 44789999999999997321 123578999999999988665432 2356899999988776666665
Q ss_pred HHH
Q 015196 88 FKL 90 (411)
Q Consensus 88 ~~~ 90 (411)
.+.
T Consensus 138 ar~ 140 (546)
T COG4626 138 ARD 140 (546)
T ss_pred HHH
Confidence 543
No 320
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.05 E-value=0.035 Score=57.88 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|..-+..++ ......+.++++|+|+|||.++-.++...
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 333455443 34344588999999999999988777654
No 321
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.078 Score=48.33 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHh---C-CCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFG---N-GRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~---~-~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++|+|..+.+.+.. . .-++..++.+|.|+||+..|...+..+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 578999999988753 2 233457789999999999988877554
No 322
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.00 E-value=0.032 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+|||+|||.+|-.++..+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 468899999999999988877653
No 323
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.079 Score=52.74 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++..+.+...+..+. ++..++.+|.|+|||.++..++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 22 EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 334445555555443 33458899999999999988876654
No 324
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.094 Score=47.78 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=33.4
Q ss_pred CCCChhHHHHHHHHHh----CCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~----~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.++|+|+...+.+.. +.-++..++.+|.|.||+..|...+..+
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 4678999998888743 2334567788999999999988876544
No 325
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.92 E-value=0.25 Score=42.62 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=22.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P 76 (411)
...++++|+|+|||-...++..+ .+.+++++..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 35789999999999875555332 2457777753
No 326
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.042 Score=52.21 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 40 NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 40 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+.-++.+++++|+|+|||+.|-+++-+.+-++++.+-
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 3457789999999999999999999888877777654
No 327
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.098 Score=50.39 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=28.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEcChhhHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P~~~l~~q~~~~~ 88 (411)
.+.++.+++|+|||..+.++... .+.+++++.+ ..+...+...+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 46789999999999887665542 2356666654 44444444433
No 328
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.90 E-value=0.11 Score=50.73 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhC----C--CCcceEEEcCCCCCHHHHHHHHHH-hc------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 28 PYQEKSLSKMFGN----G--RARSGIIVLPCGAGKSLVGVSAAC-RI------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 28 ~~Q~~ai~~~~~~----~--~~~~~ll~~~tG~GKT~~a~~~~~-~~------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
|+|+-.+..+++- + ..+.+++..|=|-|||..+..++. .+ +..+++.+++..-+....+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899988888731 1 234578889999999998666532 21 347999999998888888888776543
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEe-cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHHHHHhh
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTT-YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT 169 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t-~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~~~~~~ 169 (411)
.+............ .....|.... ...+....... ......+++++|+||+|..... .+..+....
T Consensus 81 ~~~l~~~~~~~~~~--~~~~~i~~~~~~s~~~~~s~~~-------~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 81 SPELRKRKKPKIIK--SNKKEIEFPKTGSFFKALSSDA-------DSLDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred Chhhccchhhhhhh--hhceEEEEcCCCcEEEEEecCC-------CCccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 32211111000000 0011222211 11221111100 1122357789999999999985 555444433
No 329
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.048 Score=47.11 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q 83 (411)
++..+++.+|+|+|||++|-+.+.+.+..++-+. ..+|++.
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvi-gselvqk 250 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVI-GSELVQK 250 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeeh-hHHHHHH
Confidence 5678899999999999999988888875544444 3455544
No 330
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.89 E-value=0.05 Score=51.73 Aligned_cols=128 Identities=8% Similarity=0.013 Sum_probs=68.5
Q ss_pred ceEEEcCCCCCHHHHHHHHH----Hh--cCCceEEEEcChh-hHHHHHHHHHHHhCCCCCc-EEEEcCch-hhhhcC-CC
Q 015196 45 SGIIVLPCGAGKSLVGVSAA----CR--IKKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQ-ICRFTSDS-KERFRG-NA 114 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~----~~--~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~-v~~~~~~~-~~~~~~-~~ 114 (411)
..++.++.|||||.+++..+ .. .+.+++++-|+.. +......++.......... ........ .-.... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 45778999999998865442 23 4567888888775 4455555555432211000 00000110 000001 12
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc--c-cEEEEeeecccC
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS--H-CKLGLTATLVRE 184 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~--~-~~i~lSATp~~~ 184 (411)
.|++..- + +...++. ....++++++||+..+....+..++..++. . ..+.+|.||...
T Consensus 83 ~i~f~g~--------~-d~~~~ik---~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGL--------N-DKPNKLK---SGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecc--------c-CChhHhh---CcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 2233222 0 1111111 113468999999999988888887776642 1 248899999753
No 331
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.87 E-value=0.14 Score=44.78 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..++.++.++ .....++.+|+|+|||..++..+. ..+.++++++-.. -.++..+.+..+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-~~~~i~~~~~~~ 71 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-HPVQVRRNMAQF 71 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-CHHHHHHHHHHh
Confidence 3455666543 234567789999999999887654 3467899998543 466666666654
No 332
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.86 E-value=0.018 Score=47.67 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=26.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
.++.+|++||||...+..+.+ .+++++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 467899999999988877643 4789999999764
No 333
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.83 E-value=0.052 Score=53.19 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.++++++.+|+|+|||.++-.++...+.+++.+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 4567899999999999999888888776655544
No 334
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.18 Score=46.78 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.0
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++..++.+|+|+|||..+..++..+.
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 34578899999999999988876653
No 335
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.039 Score=47.25 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHH-------------hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 27 RPYQEKSLSKMF-------------GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 27 ~~~Q~~ai~~~~-------------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
-+.|.+-++..+ +-.+++.+++.+|+|+|||..+-+.+.+....++-++-
T Consensus 160 ld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg 222 (408)
T KOG0727|consen 160 LDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG 222 (408)
T ss_pred chhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc
Confidence 466777766542 22367889999999999999988887777766665554
No 336
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.028 Score=55.18 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.+...++.+|+|+|||++|-.++..++.+++-+-.. ++...|..+..+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek 322 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEK 322 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHH
Confidence 445788999999999999999999888888877766 777777766655
No 337
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.80 E-value=0.11 Score=47.31 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=24.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
.+.++.+|+|+|||.++.+++..+ +.++.++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478889999999999988876554 45566554
No 338
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.09 Score=48.44 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHhC----CCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFGN----GRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++|||+...+.+... .-++..++.+|.|.||+..|...+..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 5789999999887532 234456688999999999988877554
No 339
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.80 E-value=0.09 Score=52.31 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 32 ~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.+...+..+ .++..++.+|.|+|||.+|..++..+.
T Consensus 34 ~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 34 RTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3333334433 345688899999999999988887664
No 340
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.78 E-value=0.14 Score=44.43 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=28.9
Q ss_pred HHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 30 QEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 30 Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
....+..+... ......++.+|+|+|||..+..+.... +..++++.
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34444444332 233578899999999999987766543 33555544
No 341
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.77 E-value=0.03 Score=54.27 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
.++++++.+|+|+|||.++-.++..+...
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 45688999999999999988887776543
No 342
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.75 E-value=0.14 Score=42.11 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=39.1
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHh
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
.++.+++|||||..|...+...+.++++++.....-..+...+..+-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHH
Confidence 47899999999999999988777899999988887777777766543
No 343
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.11 Score=51.92 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHH---HhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKM---FGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~---~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..+...+ +..+ .....++.+|.|+|||.+|..++..+.
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 45444443 3332 234668899999999999998887765
No 344
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.74 E-value=0.022 Score=58.59 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|.|-|++++... . .+++|.|++|||||.+...-+.++ ..++|+++-++..+.++..++.+..+
T Consensus 4 ~Ln~~Q~~av~~~--~---g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT--E---GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC--C---CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5889999998742 2 489999999999999876655432 24799999999888988888887654
No 345
>CHL00176 ftsH cell division protein; Validated
Probab=95.73 E-value=0.077 Score=53.21 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
++++++.+|+|+|||.+|-.++.+.+.+++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 457899999999999999888888776665554
No 346
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.71 E-value=0.035 Score=49.38 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 26 PRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
..|..++..+.++.. ....+.++.+|+|+|||.+|..+...++.+++.+.-+.
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 345666666555321 01148999999999999999988888887877776443
No 347
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.68 E-value=0.061 Score=56.15 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=51.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~ 122 (411)
..++.+|||+|||.+|-.++..+. ...++.....+..+.. ......|.++..++.-.++
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~--~~~~LiG~~pgy~g~~~~g----------------- 660 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH--SVSRLVGAPPGYVGYEEGG----------------- 660 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh--hHHHHhCCCCcccccchhH-----------------
Confidence 578899999999999877765542 2233433333333221 1223333332211110000
Q ss_pred eecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
.+...+.....+++++||++......+..++..+
T Consensus 661 -------------~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 661 -------------YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred -------------HHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1112222345689999999998877666665554
No 348
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.013 Score=51.91 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
.+.++.+|||||||+.|-.++..++-++-+ +.-.+|
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFai-ADATtL 133 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAI-ADATTL 133 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeee-ccccch
Confidence 478999999999999999988888855443 333344
No 349
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.67 E-value=0.035 Score=57.19 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+..+++.+|+|+|||.+|-.++..++..++.+.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 34578999999999999999998888877766654
No 350
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.65 E-value=0.12 Score=51.04 Aligned_cols=41 Identities=24% Similarity=0.179 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 28 PYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++-.+.+...+..+ .++..++.||.|+|||.+|..++..+.
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33334444444443 344577899999999999988877654
No 351
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.59 E-value=0.095 Score=54.87 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=26.3
Q ss_pred HHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|...+..++ ......+.++++|+|+|||.++-.++.++
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444454443 34444688999999999999987766553
No 352
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.57 E-value=0.038 Score=50.37 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhh
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l 80 (411)
..+.+.|.+.+..++... .+.+++++||||||..+-.++... ..+++.+-...+|
T Consensus 127 g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 346677888888877765 588999999999999876665443 3567766665554
No 353
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.18 Score=49.07 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHH---HHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSK---MFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~---~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..++.. .+..+...+ .++.+|.|+|||.+|...+..+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444443 344433234 46899999999999888877664
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.21 Score=46.44 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=23.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh----cC-CceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR----IK-KSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~----~~-~~~lil~ 75 (411)
...++.+|||+|||.++..++.. .+ .++.+++
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 47788999999999998777643 23 3555554
No 355
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.15 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+|+|+|||.++..++..+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 458899999999999988887664
No 356
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.54 E-value=0.091 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.6
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
...+.++.+|+|+|||.++-.++.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999777654
No 357
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.062 Score=48.79 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
++...++.+|+|+|||++|-+.+.+.+.+++=|.- ..|.+.|+.+=.+.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~-s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV-SNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeec-cccchhhHHHHHHH
Confidence 45688999999999999999998888866655443 34566777655443
No 358
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.2 Score=46.00 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++|+|+.+.+.+... .-++..++.+|.|+|||..|..++..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 479999999998743 234467789999999999988887554
No 359
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.46 E-value=0.014 Score=47.88 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=55.4
Q ss_pred EEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEE-EcCch-hhhhcCCCcEEEEe
Q 015196 47 IIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR-FTSDS-KERFRGNAGVVVTT 120 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~~~~I~v~t 120 (411)
++.|+-|-|||-+.-.++..+ ..+++|.+|+.+-++..++.+..-+.....+... ..... .........|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 478999999998855554433 2379999999986666555433211100000000 00000 00001123444555
Q ss_pred cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecccCchh
Q 015196 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187 (411)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~~~~~~ 187 (411)
++.+... ....|++|||||=.+..+...+++. ....+.||.|-.-..+.
T Consensus 81 Pd~l~~~---------------~~~~DlliVDEAAaIp~p~L~~ll~---~~~~vv~stTi~GYEGt 129 (177)
T PF05127_consen 81 PDELLAE---------------KPQADLLIVDEAAAIPLPLLKQLLR---RFPRVVFSTTIHGYEGT 129 (177)
T ss_dssp HHHHCCT-------------------SCEEECTGGGS-HHHHHHHHC---CSSEEEEEEEBSSTTBB
T ss_pred CHHHHhC---------------cCCCCEEEEechhcCCHHHHHHHHh---hCCEEEEEeeccccccC
Confidence 5433221 1245899999999999888776643 33467788887654443
No 360
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.095 Score=50.36 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=31.2
Q ss_pred ChhHHHHHHHH---HhCC-CCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEc
Q 015196 27 RPYQEKSLSKM---FGNG-RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLAT 76 (411)
Q Consensus 27 ~~~Q~~ai~~~---~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P 76 (411)
-+....++... ..+. ...+.++++|+|+|||..+..+...+ +.+++++..
T Consensus 110 g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 110 GPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 34455555443 2222 22468899999999999987766443 346676653
No 361
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.42 E-value=0.17 Score=51.06 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=25.0
Q ss_pred HHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 33 ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+...+..+. ++..++.||.|+|||.+|..++..+.
T Consensus 29 ~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 29 TLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3444454433 34458899999999999988876654
No 362
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.41 E-value=0.34 Score=48.86 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=78.6
Q ss_pred CChhHHHHHHHH---HhCCCCcceEEEcCCCCCHHHHH---HHHHHhcCC--ceEEEEcChhhHHHHHHHHH---HHhCC
Q 015196 26 PRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVG---VSAACRIKK--SCLCLATNAVSVDQWAFQFK---LWSTI 94 (411)
Q Consensus 26 l~~~Q~~ai~~~---~~~~~~~~~ll~~~tG~GKT~~a---~~~~~~~~~--~~lil~P~~~l~~q~~~~~~---~~~~~ 94 (411)
...-|.+++..+ +..+ .+..++.|.=|=|||-++ +..+.+... +++|.+|+++-++..+.-.. .++|.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~-~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 212 LTEDQAEALEILERLLDAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred cChhHHHHHHHHHHHHcCC-CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 455676666554 4443 346778899999999863 345556554 99999999987666554332 22332
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccE
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~ 174 (411)
.....--..+.......+...|-..+++... ...+++|+|||=.+.-+-..+++..+ ..
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------------~~~DllvVDEAAaIplplL~~l~~~~---~r 349 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------------EEADLLVVDEAAAIPLPLLHKLLRRF---PR 349 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc------------------ccCCEEEEehhhcCChHHHHHHHhhc---Cc
Confidence 2111100001100000111223344443221 12689999999999988777666643 46
Q ss_pred EEEeeecccCc
Q 015196 175 LGLTATLVRED 185 (411)
Q Consensus 175 i~lSATp~~~~ 185 (411)
+.||.|-.-..
T Consensus 350 v~~sTTIhGYE 360 (758)
T COG1444 350 VLFSTTIHGYE 360 (758)
T ss_pred eEEEeeecccc
Confidence 78888865433
No 363
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.39 E-value=0.049 Score=52.26 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
.+.++.+|+|+|||-.+.++...+ +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 468899999999999877766443 467777653
No 364
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.37 E-value=0.2 Score=43.69 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=39.7
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..+..++.++ ...-+++.+++|+|||..+...+.. .+.+++++.-... .+++.+.+.++
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 3455666543 2345667899999999998887543 4678888886544 45666666664
No 365
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.066 Score=47.24 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.8
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc--CCceEEEEcChhhHHHHHHHHHH
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
..+.++.+|+|+|||.+|.++..++ .+.-+.+++..+++.++...+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 4589999999999999988876544 23455555667777766555443
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.36 E-value=0.031 Score=47.33 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=22.6
Q ss_pred hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 39 GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 39 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+...+.++.+|+|+|||.....++..+
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 33444588999999999999987777654
No 367
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.36 E-value=0.051 Score=49.21 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhh
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l 80 (411)
+.+.|.+.+..++... .+.+++++||||||..+-.++... ..+++.+-...++
T Consensus 117 ~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 4445666777766654 588999999999999977766543 3567766655543
No 368
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.33 E-value=0.15 Score=50.37 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=27.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~ 86 (411)
..+|++++|+|||..+..+...+ +.+++++.. ..+..++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita-eef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS-EEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHH
Confidence 47889999999999877665443 346666653 444444433
No 369
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.33 E-value=0.04 Score=45.79 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=25.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD 82 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~ 82 (411)
.+.++.+|+|+|||..|.+++.+ .+.+++++. ..+|.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceec
Confidence 58899999999999998887643 345566654 344443
No 370
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.33 E-value=0.28 Score=45.62 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=59.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc-----CCc-eEEEEcChhh--HHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCC
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKS-CLCLATNAVS--VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~-~lil~P~~~l--~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (411)
.+...+++|||.|||.+.+.++++. .++ .||-..+--+ ++| ...+.+..+++ +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQ-Lk~Ya~im~vp---~--------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQ-LKTYADIMGVP---L--------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHH-HHHHHHHhCCc---e---------------
Confidence 4577889999999999876665443 234 4444444433 333 22333333332 2
Q ss_pred cEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-h----HHHHHHhh-ccccEEEEeeecccCch
Q 015196 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M----FRKVISLT-KSHCKLGLTATLVREDE 186 (411)
Q Consensus 115 ~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~----~~~~~~~~-~~~~~i~lSATp~~~~~ 186 (411)
.++-++..| ......+ ..+|+|.+|=+-+...+ . ...++... .....+.+|||-...+-
T Consensus 264 -~vv~~~~el----------~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 264 -EVVYSPKEL----------AEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -EEecCHHHH----------HHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 223333322 2223333 45689999977665533 1 22222222 12256888999875444
No 371
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.32 E-value=0.31 Score=47.71 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCcc-eEEEcCCCCCHHHHHHHHHHhc
Q 015196 32 KSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 32 ~ai~~~~~~~~~~~-~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.+...+..+...+ .++++|.|+|||.+|..++..+
T Consensus 24 ~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 34444455443333 4889999999999988887665
No 372
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.28 Score=40.62 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=26.8
Q ss_pred eEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChh
Q 015196 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAV 79 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~ 79 (411)
.++.+|+.||||...+..+. ..+.+++++.|...
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 47789999999998777654 35679999998643
No 373
>PRK04328 hypothetical protein; Provisional
Probab=95.24 E-value=0.2 Score=44.14 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.+..++.++ .....++.+++|+|||..++..+. ..+.++++++-.. -.++..+.+..+
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 73 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-HPVQVRRNMRQF 73 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-CHHHHHHHHHHc
Confidence 456666543 234567789999999999887654 3457888887433 355555555554
No 374
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.21 E-value=0.086 Score=55.18 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=51.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEec
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~ 121 (411)
...++.+|||+|||.+|-.+...+. ...++.+...+..... ....+.|.++..++ |
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~--~~~~l~g~~~g~~g--------------------~ 653 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH--SVARLIGAPPGYVG--------------------Y 653 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc--hHHHhcCCCCCccC--------------------c
Confidence 3578899999999999888876653 2333433333322211 11222232222111 1
Q ss_pred ceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
+. ...+...+......+|++||++.+....+..++..+
T Consensus 654 ~~----------~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 654 EE----------GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred cc----------ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 00 001223333355679999999999887766666555
No 375
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.18 E-value=0.041 Score=47.44 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhH
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSV 81 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~ 81 (411)
..++++++.+|+|+|||.+|-+++.+.+.+.+.+ ...+|.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~v-kat~li 188 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV-KATELI 188 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEe-chHHHH
Confidence 3578999999999999999988888887555544 333443
No 376
>PTZ00293 thymidine kinase; Provisional
Probab=95.16 E-value=0.16 Score=43.10 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred eEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
-++.+|+++|||.-.+..+.+ .+++++++-|...
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD 43 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 467899999999866666543 4678999998653
No 377
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.13 E-value=0.32 Score=45.43 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..+.+...+..+ .++..++.+|+|+|||.++..++..+.
T Consensus 22 ~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 22 IVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444443 234568899999999999888776653
No 378
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.12 E-value=0.21 Score=43.30 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 34 i~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
++.++.++ .....++.+++|+|||..++..+. +.+.++++++... -.++..+.+..+
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHc
Confidence 45555432 223567789999999998877753 3367888888654 366666666654
No 379
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.11 E-value=0.044 Score=48.37 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=26.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcChhhHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQ 83 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~~l~~q 83 (411)
+=.++.+|||||||.+.++.+.+.+ ..+|=+-...+-+.+
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~ 169 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHE 169 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhc
Confidence 3456779999999999888876654 345555444444333
No 380
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.09 E-value=0.028 Score=47.16 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=23.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
-.++++|||+|||-.|+.++.+.+..++++ .+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~-Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISL-DRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE--SG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEe-cce
Confidence 457899999999999999999997555544 443
No 381
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.18 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+|+|+|||.+|..++..+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHh
Confidence 388899999999999999987764
No 382
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.08 E-value=0.25 Score=51.55 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHHh---CCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~~~---~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|...+..++. .....+.++++|+|+|||.++-.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 5566666643 3344588999999999999987777655
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.08 E-value=0.28 Score=47.89 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEE
Q 015196 28 PYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~ 102 (411)
+.-...++.++.++ ....+++.+|+|+|||..++..+. +.+.++++++- -+-.+|.......+ |.+..
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~l-g~~~~----- 318 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSW-GIDFE----- 318 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHc-CCChH-----
Confidence 33445667777654 234567789999999999888764 34678999885 44477777777664 33211
Q ss_pred cCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCC
Q 015196 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (411)
Q Consensus 103 ~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~ 157 (411)
.+.....+.+....-... ........+...+...+++.||+|=...+
T Consensus 319 ------~~~~~g~l~~~~~~p~~~--~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 319 ------EMEQQGLLKIICAYPESA--GLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred ------HHhhCCcEEEEEcccccC--ChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 111122233333211100 01122345556666678899999987654
No 384
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.05 E-value=0.12 Score=46.92 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHh-CC-C-CcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHH
Q 015196 31 EKSLSKMFG-NG-R-ARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ 83 (411)
Q Consensus 31 ~~ai~~~~~-~~-~-~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q 83 (411)
...++.++. ++ + .+-+.+.+|+|+|||..++.++. ..+.+++++...-.+..+
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 355666675 43 2 23456789999999999887754 346788888665544443
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.32 Score=45.81 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=22.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc----CCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~ 75 (411)
..++.+|+|+|||.++..++... +.++.++.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 46788999999999988876432 34555554
No 386
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.19 Score=51.64 Aligned_cols=107 Identities=10% Similarity=0.128 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHh--------C-C--CCcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 28 PYQEKSLSKMFG--------N-G--RARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 28 ~~Q~~ai~~~~~--------~-~--~~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
++|.+|++++.. . . +....++.+|||+|||.+|..++..+. ...+|-+...+..+ ..+..+.
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-----vskligs 639 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-----VSKLIGS 639 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-----hhhccCC
Confidence 578899887731 1 1 234578889999999999988876654 35555555444222 3343333
Q ss_pred CCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
++..++.-. ...+.+.+....+.+|.|||+..-....+..+.+.+
T Consensus 640 p~gyvG~e~------------------------------gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 640 PPGYVGKEE------------------------------GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred Ccccccchh------------------------------HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 332221111 123445666678889999999988777665444443
No 387
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=95.02 E-value=0.044 Score=54.18 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=53.1
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcChhhHHHHHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.-..|-+.|+.|+...+.-. -.++.+|+|+|||++.+.++..+ ..+++++|-+...++|....+-.
T Consensus 375 g~~ildsSq~~A~qs~ltye---lsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 375 GLVILDSSQQFAKQSKLTYE---LSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred CceeecHHHHHHHHHHhhhh---hheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 44577889999999987654 67999999999999988776433 24899999999989998776654
No 388
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.01 E-value=0.1 Score=47.52 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHh-CCC--CcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHH
Q 015196 28 PYQEKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ 83 (411)
Q Consensus 28 ~~Q~~ai~~~~~-~~~--~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q 83 (411)
+.=...++.++. ++- .+-+.+.+|+|+|||..++.++. ..+.+++++.+.-.+-.+
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH
Confidence 334456677776 432 23456789999999999888764 446789988876665544
No 389
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.98 E-value=0.28 Score=48.59 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=26.2
Q ss_pred HHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 31 EKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 31 ~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.+...+..+ -++..++.+|.|+|||.+|..++..+.
T Consensus 25 v~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 25 VETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 33444445443 233478899999999999988877664
No 390
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.071 Score=49.96 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=35.1
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~ 87 (411)
..+..++.+|+|+|||+.+-.++.+.+..+.-++|+ +|..-|..+
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas-sLtsK~~Ge 229 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS-SLTSKYVGE 229 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcceEeeccHH-HhhhhccCh
Confidence 345678999999999999999999999888888874 455544433
No 391
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.038 Score=50.44 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=35.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
+.+++++|+|+|||+.|=+++-+.+ ..++-+.+..|...|..+=.+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhhhhhhccchHH
Confidence 4788999999999999888888877 555566667788888765443
No 392
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.36 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHH---HhCC-CCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKM---FGNG-RARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~---~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|.++...+ +..+ -++..++.+|.|+||+.+|..++..+
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 55555444 3333 23457889999999999998887654
No 393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.85 E-value=0.23 Score=43.06 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=32.0
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---cC------CceEEEEcChhh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IK------KSCLCLATNAVS 80 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~------~~~lil~P~~~l 80 (411)
.++.++.++ ...-..+.+++|+|||..++.++.. .+ .+++++......
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~ 65 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF 65 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC
Confidence 455555432 2235678899999999998877643 23 678888865543
No 394
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.85 E-value=0.042 Score=43.57 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
++++.+|+|+|||.++-.++..++.+++.+.-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~ 33 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCS 33 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence 468999999999999999888888776666543
No 395
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.84 E-value=0.48 Score=45.23 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=22.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~ 75 (411)
+..++.+|||+|||.+++.++.. .+.++.++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35678899999999987766432 234666665
No 396
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.82 E-value=0.09 Score=48.03 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l 80 (411)
.+.+.|.+.+...+... .+.++.++||+|||..+-.++... ..+++.+-...++
T Consensus 132 ~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34566778887776654 589999999999998766555432 3567766666553
No 397
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.3 Score=48.79 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHH---HHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLS---KMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~---~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..++. ..+.++ -++..++++|.|+|||.+|..++..+.
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444444 334443 234577899999999999988887665
No 398
>PHA00547 hypothetical protein
Probab=94.76 E-value=0.034 Score=47.84 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
-.++.+|-|+|||+.|...+...+.++
T Consensus 77 is~i~G~LGsGKTlLMT~LA~~~K~K~ 103 (337)
T PHA00547 77 LSVIIGKLGTGKTLLLTYLSQTMKLLT 103 (337)
T ss_pred ceEEeccCCCchhHHHHHHHHHHHhhh
Confidence 778999999999999877776655433
No 399
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.75 E-value=0.1 Score=47.33 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+.+.+.+--..++...+..+ ++.++.+++|+|||.++..++..++.+++-+.-
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~ 97 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNL 97 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 44667766666666655443 589999999999999999999999876665543
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.71 E-value=0.67 Score=44.03 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=24.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
....+++++|+|||.++..++..+ +.++++++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 456788999999999877765433 567777764
No 401
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.66 E-value=0.12 Score=45.09 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcCh
Q 015196 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (411)
Q Consensus 34 i~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~ 78 (411)
++.++.++ ...-..+.+|+|+|||..+..++... +..++++....
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 44555543 12345678999999999988776432 26888888544
No 402
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.65 E-value=0.34 Score=46.76 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=58.0
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCch
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~ 106 (411)
.-++.++.++ ...-.++.+++|+|||..++.++.. .+.+++++...- -.+|+..+..++ +....
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rl-g~~~~--------- 149 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRL-GLPEP--------- 149 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHc-CCChH---------
Confidence 3445555432 2234577899999999998877543 346899988643 356655554443 32211
Q ss_pred hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 107 ~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
++.+.... ....+...+...++++||+|....+.
T Consensus 150 --------~l~~~~e~----------~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 --------NLYVLSET----------NWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred --------HeEEcCCC----------CHHHHHHHHHhcCCcEEEEecchhhc
Confidence 12221111 12344455556788999999998764
No 403
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.28 Score=47.29 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=26.8
Q ss_pred HHHHHHH---HHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSK---MFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~---~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
|..++.. .+..+ -++..++.+|+|+|||.+|..++..+.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4444443 34433 234578899999999999988887664
No 404
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.63 E-value=0.1 Score=44.03 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=13.9
Q ss_pred eEEEcCCCCCHHHHHHHH
Q 015196 46 GIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~ 63 (411)
.++.+.+|+|||+.|+..
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 478999999999998776
No 405
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.53 Score=47.22 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 34 i~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+...+..+. ++..++++|.|+|||.+|...+..+.
T Consensus 29 L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 29 LKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444433 33468899999999998877776653
No 406
>PRK09354 recA recombinase A; Provisional
Probab=94.58 E-value=0.2 Score=46.10 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHHh-CCC--CcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHH
Q 015196 31 EKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (411)
Q Consensus 31 ~~ai~~~~~-~~~--~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~ 82 (411)
...++.++. ++- .+-+.+.+|+|+|||..++.++. ..+.+++++..--++-.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 445666676 432 23456789999999999887763 45678888887666554
No 407
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.58 E-value=0.2 Score=42.79 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATN 77 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~ 77 (411)
.-..+.+|+|+|||..++..+. ..+.+++++.-.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3556789999999999887764 345688888764
No 408
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.55 E-value=0.2 Score=44.76 Aligned_cols=117 Identities=9% Similarity=0.120 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------------CCceEEEEcChhhHHHHHHHHH---H
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFK---L 90 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~lil~P~~~l~~q~~~~~~---~ 90 (411)
|..|-+.|..++..+ ...++.++.|+|||++++.....+ .++|+++.---. .+....++. .
T Consensus 75 rs~~P~lId~~fr~g--~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a 151 (402)
T COG3598 75 RSNSPQLIDEFFRKG--YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRA 151 (402)
T ss_pred cccChhhhhHHhhcC--eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHH
Confidence 444667777776654 366778999999999977664221 147888874221 222233332 2
Q ss_pred HhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 91 WSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
-.++++..+..+.-..........+++. + .| ..++...+...++++||+|=.=.+.
T Consensus 152 ~mgLsPadvrn~dltd~~Gaa~~~d~l~--p-kl---------~rRfek~~~Q~rp~~vViDp~v~f~ 207 (402)
T COG3598 152 RMGLSPADVRNMDLTDVSGAADESDVLS--P-KL---------YRRFEKILEQKRPDFVVIDPFVAFY 207 (402)
T ss_pred HcCCChHhhhheeccccccCCCcccccc--H-HH---------HHHHHHHHHHhCCCeEEEcchhhhc
Confidence 2466666554433210000000111111 1 11 1233444445789999999665544
No 409
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=94.55 E-value=1.1 Score=35.61 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh----CCcee-eCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKPMI-YGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l----~~~~i-~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
+...+..|++..- ..|.+++|+|.+.+.++.+-+.| .-.++ |+..... .. ....|+|+. ..
T Consensus 14 ~~~~~c~L~~ka~-~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~-~~~PV~l~~---~~ 79 (142)
T PRK05728 14 LEALLCELAEKAL-RAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PA-AGQPVLLTW---PG 79 (142)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CC-CCCCEEEEc---CC
Confidence 3445555554333 45899999999999999999888 23343 4432211 01 245777762 11
Q ss_pred ccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHhhcCCce
Q 015196 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSF 406 (411)
Q Consensus 327 Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~~~g~~~ 406 (411)
.-+.+...++|++... ...+.++. ..++.++..+......+|.|=+.+++.||..
T Consensus 80 ~~~~~~~~~LinL~~~---~p~~~~~F----------------------~Rvieiv~~d~~~~~~aR~r~r~Yr~~G~~l 134 (142)
T PRK05728 80 KRNANHRDLLINLDGA---VPAFAAAF----------------------ERVVDFVGYDEAAKQAARERWKAYRAAGYAL 134 (142)
T ss_pred CCCCCCCcEEEECCCC---Ccchhhcc----------------------cEEEEEeCCCHHHHHHHHHHHHHHHHCCCCc
Confidence 2345556778887332 11222222 2366777666677888899999999999999
Q ss_pred eEeeC
Q 015196 407 KVHHV 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+.++.
T Consensus 135 ~~~~~ 139 (142)
T PRK05728 135 TYWQQ 139 (142)
T ss_pred eEecC
Confidence 98863
No 410
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.55 E-value=0.18 Score=42.36 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=32.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc-------------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~-------------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
-+++.||+|+|||..++.++... ..+++++..-.. ..++.+.+....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 57889999999999977765322 347888887655 556777776654
No 411
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.51 E-value=0.14 Score=47.03 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHH---HhC--CCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHH
Q 015196 25 QPRPYQEKSLSKM---FGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQ 83 (411)
Q Consensus 25 ~l~~~Q~~ai~~~---~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q 83 (411)
.++..+..++... +.+ ....+.++.+|||+|||..+..++..+ +.+|+++. ...+..+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADELIEI 225 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHHHHH
Confidence 5667776776633 221 122588999999999999987776543 44565554 3444443
No 412
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.48 Score=43.99 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCc
Q 015196 30 QEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (411)
Q Consensus 30 Q~~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~ 105 (411)
...-++.++.++ +..-.++-+.+|.|||...+.++..+. +++|+++-- +-..|+.-+..+. +++.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGE-ES~~QiklRA~RL-~~~~--------- 146 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGE-ESLQQIKLRADRL-GLPT--------- 146 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCC-cCHHHHHHHHHHh-CCCc---------
Confidence 444556666553 223455678999999999887765543 489999874 4588888877774 4432
Q ss_pred hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch
Q 015196 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 106 ~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~ 160 (411)
.++.+..... .+.+...+...+++++|+|-++.+..+
T Consensus 147 --------~~l~l~aEt~----------~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 --------NNLYLLAETN----------LEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred --------cceEEehhcC----------HHHHHHHHHhcCCCEEEEeccceeecc
Confidence 2233333322 345667777899999999999998754
No 413
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.49 E-value=0.6 Score=42.67 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 34 LSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 34 i~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+...+..+ -++..++.+|.|+||+.+|...+..+
T Consensus 16 L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 16 LTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33334433 34577889999999999998887665
No 414
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.46 E-value=0.11 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=19.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+++.+|+|+|||.++..+....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh
Confidence 588999999999999877765543
No 415
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.44 E-value=0.084 Score=43.47 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=39.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
..++.+++|||||..|..++...+.++++++.....-+++..++..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHH
Confidence 578899999999999999988888788888877766777777776653
No 416
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.39 E-value=0.1 Score=50.55 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=34.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
...++.+..|||||.+|+--++.+ .+.||++.|++...+=..+-+..
T Consensus 227 ~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 227 KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh
Confidence 467888999999999987754432 24699999999866554444433
No 417
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.6 Score=43.85 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 30 QEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 30 Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..+.+...+..+ .++..++++|+|+|||..+..++..+.
T Consensus 25 ~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 25 ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444445443 345678999999999999888776654
No 418
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.38 E-value=0.4 Score=43.23 Aligned_cols=68 Identities=21% Similarity=0.129 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHh--cC---CceEEEEcCh-hhHHHHHHHHHHHhCC
Q 015196 27 RPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR--IK---KSCLCLATNA-VSVDQWAFQFKLWSTI 94 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~--~~---~~~lil~P~~-~l~~q~~~~~~~~~~~ 94 (411)
|+...+.+...+.. .....+.|+++.|.|||.+|..++.. .. ..++|+.-.. .-..+....+...++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 34555566555544 34567778999999999999888755 32 3455554322 2224444455554443
No 419
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.36 E-value=0.33 Score=44.31 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=31.4
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH--h-------cCCceEEEEcChhh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC--R-------IKKSCLCLATNAVS 80 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~--~-------~~~~~lil~P~~~l 80 (411)
.++.++.++ ...-..+.+++|+|||..++.++. . .+.+++|+.-.-..
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 355556543 223456889999999999876652 1 24588988865543
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.33 E-value=0.55 Score=44.87 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.9
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
+...++++++|+|||.++..++..+ +.+++++..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4467789999999999987776544 456666654
No 421
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.066 Score=46.98 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.2
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
++..+++.+++|+|||+.|-+.+......+|-++
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvv 251 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVV 251 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhh
Confidence 5678999999999999998777766654544444
No 422
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.16 Score=49.69 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHH
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~ 86 (411)
.+++.+++.+|+|+|||++|-.++...+..++-+ +..+|..-|..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-kgpEL~sk~vG 510 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-KGPELFSKYVG 510 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-cCHHHHHHhcC
Confidence 4678999999999999999988888877666655 44566555543
No 423
>PHA02244 ATPase-like protein
Probab=94.24 E-value=0.12 Score=47.64 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 33 ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+..++..+ .+++|.+|||+|||.++..++..++.+++.+.
T Consensus 111 ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 111 DIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 334445444 58999999999999999888888887766654
No 424
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.23 E-value=0.55 Score=41.12 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=24.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---------------cCCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---------------IKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~lil~P 76 (411)
-+++.+|.|+|||..++.++.. ...+|+++.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 4689999999999998877642 1247888883
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.19 E-value=0.13 Score=53.04 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.1
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
+...++.+|+|+|||.++-.++..++..++.+.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 457889999999999998888777776655443
No 426
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.17 E-value=0.65 Score=43.48 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=47.1
Q ss_pred EEEcCCCCCHHHHHHHH-HH---hcC-CceEEEEcChhhHHHH-HH---HHHHHhCCCCCcEEEE--cCchhhhhcCCCc
Q 015196 47 IIVLPCGAGKSLVGVSA-AC---RIK-KSCLCLATNAVSVDQW-AF---QFKLWSTIQDDQICRF--TSDSKERFRGNAG 115 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~-~~---~~~-~~~lil~P~~~l~~q~-~~---~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~ 115 (411)
++.++.|+|||.+.+.. +. ... .+.++++|+..-+... .. .+...... ...+..- ..... .+.....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~nG~~ 78 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI-ILPNGSR 78 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE-EETTS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE-EecCceE
Confidence 46789999999985543 22 223 2555555666544442 22 22221111 0111111 11111 0112233
Q ss_pred EEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHh
Q 015196 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (411)
Q Consensus 116 I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~ 168 (411)
|.+.+.+.- ...+.+....++++++||+-......+...+..
T Consensus 79 i~~~~~~~~-----------~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~ 120 (384)
T PF03237_consen 79 IQFRGADSP-----------DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIRR 120 (384)
T ss_dssp EEEES----------------SHHHHHTS--SEEEEESGGGSTTHHHHHHHHH
T ss_pred EEEeccccc-----------cccccccccccceeeeeecccCchHHHHHHHHh
Confidence 444443311 112344457889999999999887766555543
No 427
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.16 E-value=0.12 Score=49.88 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCccEEEEecCCCCCchhHHHHHHhh--ccccEEEEeeec
Q 015196 144 REWGLLLMDEVHVVPAHMFRKVISLT--KSHCKLGLTATL 181 (411)
Q Consensus 144 ~~~~lvIiDE~H~~~~~~~~~~~~~~--~~~~~i~lSATp 181 (411)
.++.+.|+||+|.+....|..++..+ ++.++++.=||-
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 47789999999999999999887776 444777777774
No 428
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.16 E-value=0.16 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=18.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
.++++.+|.|+|||.++-.++.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHH
Confidence 5889999999999988766554
No 429
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.16 E-value=0.087 Score=51.59 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=32.6
Q ss_pred cccCCCCCCChhHHHHHHHHH---hCCCCcceEEEcCCCCCHHHH
Q 015196 18 MELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLV 59 (411)
Q Consensus 18 ~~~~~~~~l~~~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~ 59 (411)
..+...++|++.|.+..+.+. ..+ .-+++..|||+|||+.
T Consensus 8 ~~F~fPy~PYdIQ~~lM~elyrvLe~G--kIgIfESPTGTGKSLS 50 (821)
T KOG1133|consen 8 IEFPFPYTPYDIQEDLMRELYRVLEEG--KIGIFESPTGTGKSLS 50 (821)
T ss_pred cccCCCCCchhHHHHHHHHHHHHHhcC--CeeeeeCCCCCCchHH
Confidence 345677999999999998874 333 4889999999999986
No 430
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.13 E-value=0.068 Score=47.27 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCcceE--EEcCCCCCHHHHHHHHHHh---------cCCceEEEEcChhhHHHHHHHHHH
Q 015196 33 SLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 33 ai~~~~~~~~~~~~l--l~~~tG~GKT~~a~~~~~~---------~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.++.++.++-+...+ +++++|+|||-.++.++.. .+.+++|+........+-..++.+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 455666543222223 6899999999988776532 235799998666554444444444
No 431
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.12 E-value=0.045 Score=50.18 Aligned_cols=44 Identities=14% Similarity=-0.097 Sum_probs=33.8
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHH
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~ 85 (411)
..+...+|++|+|+|||+.+-.++.+++-.++.+.. .+|...|.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa-~eL~sk~v 189 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA-GELESENA 189 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH-HHhhcCcC
Confidence 346678889999999999999999999977777664 34444433
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=94.06 E-value=0.38 Score=45.85 Aligned_cols=33 Identities=30% Similarity=0.232 Sum_probs=24.2
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~ 75 (411)
+.-.++++++|+|||.++..++..+ +.+++++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456788999999999987776433 45677666
No 433
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.98 E-value=0.49 Score=43.45 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcCh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~ 78 (411)
.+..++.++ ...-..+.+|+|+|||..++.++... +.+++|+.---
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 344445442 22345688999999999988876542 34788887544
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.90 E-value=0.16 Score=44.65 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=19.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.++++.+|.|+|||..+-.++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 5899999999999987666655443
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.83 E-value=0.26 Score=45.78 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=24.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC----CceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~P~~ 78 (411)
...++.+|||+|||.++..++.... ++++.+-...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~ 161 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPI 161 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCCh
Confidence 4778899999999999766665432 3455554433
No 436
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.095 Score=46.50 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~ 82 (411)
.+..+++++|+|+|||+.+-++++.++-..|.++. .+|++
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s-s~lv~ 204 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS-SALVD 204 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH-hhhhh
Confidence 46788999999999999999999999988888875 34443
No 437
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.078 Score=49.17 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=27.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
.++++.+|||+|||++|-.++.-++-+ +.+|...+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVP-faIcDcTtL 262 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVP-FAICDCTTL 262 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCC-eEEecccch
Confidence 488999999999999988888777744 455555554
No 438
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.77 E-value=0.5 Score=43.59 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---------cCCceEEEEcChh
Q 015196 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAV 79 (411)
Q Consensus 34 i~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---------~~~~~lil~P~~~ 79 (411)
++.++.++ ...-+.+.+++|+|||..++.++.. .+.+++|+...-.
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 45555543 1234458899999999988766421 1358899887443
No 439
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.74 E-value=0.097 Score=40.23 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=21.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
.+|.+++|+|||.++-.++.+++-.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 4789999999999999988887633
No 440
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.69 E-value=0.16 Score=46.94 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChhh
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~l 80 (411)
+...+... .+.++.+|||||||..+-.++.... .+++.+-+..++
T Consensus 155 l~~~v~~~--~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGR--LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcC--CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 33334433 5899999999999999777765543 477766666543
No 441
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.8 Score=42.25 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=22.5
Q ss_pred HHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 36 KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 36 ~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+..+. ++..++.+|.|+|||..|..++..+
T Consensus 20 ~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 20 NSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3344333 3345889999999999988876654
No 442
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.67 E-value=0.23 Score=44.44 Aligned_cols=45 Identities=16% Similarity=-0.020 Sum_probs=30.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
.-+++.+++|+|||..+...+.. .+.++++++---. ..++...+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~-~~~~~~r~~ 79 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP-VVRTARRLL 79 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC-HHHHHHHHH
Confidence 36788999999999987766543 2668888875332 344444443
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.57 E-value=0.57 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=23.7
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+..+.......+.++.+|+|+|||...-.++..+
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 4444544333578999999999999876666443
No 444
>PRK05973 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.18 Score=43.75 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=33.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
-.+|.|+||+|||..++..+. ..+.++++++---. .+|..+++..+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 567789999999999887654 33678888875443 56667777664
No 445
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.46 E-value=0.21 Score=46.22 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.-..+++.++.-+...+++|.+|+|+|||.++..++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4445566666532333589999999999999987765544
No 446
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.41 E-value=0.31 Score=37.48 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=27.9
Q ss_pred EEcCCCCCHHHHHHHHHHhcC------CceEEEE-----cChhhHHHHHHHHHHH
Q 015196 48 IVLPCGAGKSLVGVSAACRIK------KSCLCLA-----TNAVSVDQWAFQFKLW 91 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~~~~~------~~~lil~-----P~~~l~~q~~~~~~~~ 91 (411)
+.++||+|||+++-.++..+. .-|.... |...-+.+-..++.++
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 469999999999988876642 1233333 4445555555555554
No 447
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.38 E-value=0.5 Score=46.22 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEcChhhHHHHHHH----HHHHhCCCCCcEEEEcCchh-hhhcC
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQ----FKLWSTIQDDQICRFTSDSK-ERFRG 112 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P~~~l~~q~~~~----~~~~~~~~~~~v~~~~~~~~-~~~~~ 112 (411)
++..+..-|=-.|||.....+|.- .+-++.+++..+-..+-..+| +.+|++-... +..-.+... .....
T Consensus 202 QkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v-i~~k~~tI~~s~pg~ 280 (668)
T PHA03372 202 QKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT-IENKDNVISIDHRGA 280 (668)
T ss_pred ccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce-eeecCcEEEEecCCC
Confidence 446778899999999876555432 245899999988766655554 4566542211 111110000 00001
Q ss_pred CCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh--ccccEEEEeeec
Q 015196 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--KSHCKLGLTATL 181 (411)
Q Consensus 113 ~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~--~~~~~i~lSATp 181 (411)
+..+.+++... ...+....++++++||+|-+..+.+..++..+ +..++|..|.|-
T Consensus 281 Kst~~fasc~n--------------~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 281 KSTALFASCYN--------------TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred cceeeehhhcc--------------CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCC
Confidence 11222222110 01223478899999999999999888777655 445788888664
No 448
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.37 E-value=0.22 Score=40.31 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=22.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
-..+..++|.|||.+|+..+.+ .+.+++++=
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4556788999999998887543 356777743
No 449
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.35 E-value=0.24 Score=44.88 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh--cCCceEEEEcChhh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR--IKKSCLCLATNAVS 80 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~--~~~~~lil~P~~~l 80 (411)
++.+.|...+..++... .+.++++.||||||.+.-.+... ...+++.+-.+.+|
T Consensus 157 t~~~~~a~~L~~av~~r--~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 157 TMIRRAAKFLRRAVGIR--CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred CcCHHHHHHHHHHHhhc--eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 46667777777777654 58899999999999885555433 34689998887764
No 450
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.35 E-value=0.58 Score=44.60 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=23.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh----cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~ 75 (411)
...++++++|+|||.++..++.. .+.+++++.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45678899999999998777644 245666665
No 451
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.34 E-value=0.058 Score=44.68 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=26.9
Q ss_pred CCCcEEEEecceecccCCCChhhHHHHHHHh--cCCccEEEEecCCCCCch
Q 015196 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIR--NREWGLLLMDEVHVVPAH 160 (411)
Q Consensus 112 ~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~--~~~~~lvIiDE~H~~~~~ 160 (411)
..++|+|++|..|.... ....+. ..+..+|||||||++.+.
T Consensus 118 ~~adivi~~y~yl~~~~--------~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPS--------IRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHH--------HHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHH--------HHhhhccccccCcEEEEecccchHHH
Confidence 45899999999776531 222221 245569999999998754
No 452
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.25 E-value=0.47 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=18.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHH
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
....++++|+|+|||-.+-++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign 135 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN 135 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999988666543
No 453
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.20 E-value=0.22 Score=54.42 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c----C-CceEEEEcChhhHHHHHHHHHHHh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----K-KSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~----~-~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
++++-|++++.. .+ .+.+|.|..|||||.+...-+.. + . .++|+++=|+..+.++..++.+.+
T Consensus 1 ~~t~~Q~~ai~~--~~---~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RG---QNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCCHHHHHHHhC--CC---CCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 357889999973 22 48899999999999997665432 2 1 479999999998888888777643
No 454
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.093 Score=52.68 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.++.++|++|+|+|||+.|-+++.+.+-+++-++-
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG 377 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 377 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeech
Confidence 47899999999999999999999999977777664
No 455
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.13 E-value=0.31 Score=40.82 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=35.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--CCceEEE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCL 74 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil 74 (411)
..+-+.|.+.+...+..+ ...++.+|||+|||..+-.++... ..+++.+
T Consensus 8 g~~~~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 8 GTFSPLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred CCCCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 456678888888888765 588999999999998865554433 2344443
No 456
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.09 E-value=0.26 Score=43.84 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC---CceEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATN 77 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~---~~~lil~P~ 77 (411)
-+.+.|.+.+..++... ...+++.++||+|||.++..++..+. .+++.+-..
T Consensus 63 g~~~~~~~~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp 117 (264)
T cd01129 63 GLKPENLEIFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDP 117 (264)
T ss_pred CCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCC
Confidence 35677888888776542 13578899999999999776665543 345554433
No 457
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.16 Score=49.34 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHH
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~ 87 (411)
.+..+++++|+|+|||++|=+++.+.+-.++=+ -..+|..-|..+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-KGPELlNkYVGE 588 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV-KGPELLNKYVGE 588 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEee-cCHHHHHHHhhh
Confidence 356889999999999999988888887665544 445666655543
No 458
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.97 E-value=0.25 Score=45.23 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.6
Q ss_pred cCCCCCCChhHHHHHHHHHhCCC---CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGR---ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~---~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
+.+.+..|.+|...+..++.+.. +....+.+.+|+|||.+...+..+++...+|+.+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ 64 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCV 64 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehH
Confidence 34567789999999999987642 23347899999999999999999998888998874
No 459
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.95 E-value=1.2 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=20.0
Q ss_pred hCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 39 GNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 39 ~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
....+.+.++.+|+|+|||.+|-.+.
T Consensus 171 a~~~~~~vlL~Gp~GtGKTTLAr~i~ 196 (615)
T TIGR02903 171 ASPFPQHIILYGPPGVGKTTAARLAL 196 (615)
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 33344579999999999999876654
No 460
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.90 E-value=0.15 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=26.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC---CceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~---~~~lil~P~~~ 79 (411)
...++.+|||+|||.+|-.++..+. ..-++.+....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE 42 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc
Confidence 4678999999999999888876665 25555555443
No 461
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=1.2 Score=43.26 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=22.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~ 75 (411)
....+.+|+|+|||.++..++..+ ++++.++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 466788999999999876665432 24565554
No 462
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.86 E-value=0.68 Score=42.69 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=50.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc--CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEec
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~ 121 (411)
.+++|.+++|+||+.+|-.+-... ...-++.+....+...+.... .+|. .-+.+++.... -.
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~--lfG~---~~g~~~ga~~~-----------~~ 86 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE--LFGH---EAGAFTGAQKR-----------HQ 86 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH--Hhcc---ccccccCcccc-----------cC
Confidence 589999999999999976553322 234445555444444333221 1121 11222221100 00
Q ss_pred ceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh
Q 015196 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (411)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~ 169 (411)
..+....-+.+++||++.+....-.+++..+
T Consensus 87 -----------------G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l 117 (329)
T TIGR02974 87 -----------------GRFERADGGTLFLDELATASLLVQEKLLRVI 117 (329)
T ss_pred -----------------CchhhCCCCEEEeCChHhCCHHHHHHHHHHH
Confidence 1111234579999999999987666555554
No 463
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.84 E-value=0.43 Score=44.62 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHH--hc-CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEe
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC--RI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~--~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t 120 (411)
.++++.++||+||++.|..+-. .. ....+|-+...++.+.... .. .+|. .-|.++|.....
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~-~e-LFG~---~kGaftGa~~~k----------- 165 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE-AE-LFGH---EKGAFTGAQGGK----------- 165 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-HH-Hhcc---ccceeecccCCc-----------
Confidence 5899999999999999766532 12 2344555554443333222 22 3443 223334321110
Q ss_pred cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhcc
Q 015196 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (411)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~ 171 (411)
. ..|...+=+.+.+||+|.++...-.+++..+..
T Consensus 166 ~-----------------Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~ 199 (403)
T COG1221 166 A-----------------GLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEE 199 (403)
T ss_pred C-----------------chheecCCCEEehhhhhhCCHhHHHHHHHHHHc
Confidence 0 122223446999999999998765555555533
No 464
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.79 E-value=0.83 Score=37.47 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=23.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
-..+..++|.|||..|+..+.+ .+.+|+++=
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567789999999999888654 356776663
No 465
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.084 Score=45.51 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
++..++..+|+|+|||++|-+.+++.+..+|=++
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLA 237 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA 237 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchHHHhc
Confidence 5678999999999999999888777664444333
No 466
>PRK10436 hypothetical protein; Provisional
Probab=92.73 E-value=0.21 Score=48.14 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.-+.+.|.+.+..++... ..-.++.+|||||||.+...++..+
T Consensus 200 LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhh
Confidence 346777888888876542 2367788999999999876666554
No 467
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.64 E-value=0.37 Score=48.83 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=28.2
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+.++++.+|+|+|||.++-.++.+++..++.+.+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 4578899999999999998888888877766654
No 468
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.62 E-value=0.2 Score=45.24 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
...+-|..-+.++..+. -.+-.+|-|+|||+.|...+.
T Consensus 128 ~kt~~Q~~y~eai~~~d---i~fGiGpAGTGKTyLava~av 165 (348)
T COG1702 128 PKTPGQNMYPEAIEEHD---IVFGIGPAGTGKTYLAVAKAV 165 (348)
T ss_pred ecChhHHHHHHHHHhcC---eeeeecccccCChhhhHHhHh
Confidence 35677888888887764 556679999999999877654
No 469
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.60 E-value=0.32 Score=43.44 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=25.8
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
++.++.++ +++++++|+|+|||.++-..+..+.
T Consensus 26 l~~l~~~~--~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 26 LDLLLSNG--RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHCT--EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHcC--CcEEEECCCCCchhHHHHhhhccCC
Confidence 34445555 6999999999999999888876665
No 470
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=92.59 E-value=0.25 Score=44.14 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=22.9
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
...+.++.+|+|+|||-+....+..+...
T Consensus 61 ~lPh~L~YgPPGtGktsti~a~a~~ly~~ 89 (360)
T KOG0990|consen 61 GLPHLLFYGPPGTGKTSTILANARDFYSP 89 (360)
T ss_pred CCCcccccCCCCCCCCCchhhhhhhhcCC
Confidence 34488999999999999988877766543
No 471
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.56 E-value=0.29 Score=45.02 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=26.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC--CceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~P~~~ 79 (411)
.+.+++++||||||...-+++.... .+++.+-...+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~E 198 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDARE 198 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCc
Confidence 5899999999999998766666554 46666544444
No 472
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.46 E-value=0.44 Score=42.89 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=22.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc----C-CceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~----~-~~~lil~ 75 (411)
...++.+|||+|||.++..++..+ + .++.++.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 356788999999999977765432 3 4666665
No 473
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.45 E-value=0.67 Score=38.65 Aligned_cols=35 Identities=23% Similarity=0.075 Sum_probs=26.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~ 78 (411)
....+..++|.|||-.|+..+.+ .+.+|+++==.+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 47888999999999999888654 356777775444
No 474
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=92.42 E-value=0.15 Score=45.81 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
-.+|.+||++|||-.|+.++.+++.
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~ 29 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGG 29 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCC
Confidence 5688999999999999999999885
No 475
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.42 E-value=1.2 Score=43.97 Aligned_cols=101 Identities=12% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCeEEEEecChhHHHHHHHHhC------------CceeeCCCCHHHHHHHHHHhcCC---CCeeEEEe--eccCccccCc
Q 015196 268 GDKIIVFADNLFALTEYAMKLR------------KPMIYGATSHVERTKILQAFKCS---RDLNTIFL--SKVGDNSIDI 330 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l~------------~~~i~g~~~~~~r~~~~~~f~~~---~~~~vlv~--t~~~~~Gid~ 330 (411)
.+.+++|.++.+-...+.+.+. ..+.....+ -+.+++.|... +.--+|++ -..++||+|+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 3568999999888777777662 123333333 44556666554 23356666 3788999998
Q ss_pred cCc--cEEEEecCCCCCHH-------------------------------HHHHHhhcccccCCCccccccCCCcceeEE
Q 015196 331 PEA--NVIIQISSHAGSRR-------------------------------QEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377 (411)
Q Consensus 331 ~~~--~~vi~~~~~~~s~~-------------------------------~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~ 377 (411)
.+- +.|++..-|+.|.. ..-|.||||.|-.++ .+.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~D------------YA~ 773 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKD------------YAS 773 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhcc------------cee
Confidence 653 34555533433311 127999999998743 566
Q ss_pred EEEeec
Q 015196 378 FYSLVS 383 (411)
Q Consensus 378 ~y~~~~ 383 (411)
+|.+..
T Consensus 774 i~LlD~ 779 (821)
T KOG1133|consen 774 IYLLDK 779 (821)
T ss_pred EEEehh
Confidence 777643
No 476
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.25 E-value=0.54 Score=41.77 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=34.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
...++.+++|+|||..++..+. +.+.++++++-. +...+..+.+.++
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec-CCHHHHHHHHHHc
Confidence 4678889999999999888764 346789999864 3466666666653
No 477
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.17 E-value=2 Score=45.77 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=27.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
+-++|.||.|+|||..+...+...+ .+.|+.-.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 4678899999999999888877666 78888653
No 478
>PLN02165 adenylate isopentenyltransferase
Probab=92.07 E-value=0.17 Score=46.06 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=23.7
Q ss_pred hCCCCcceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 39 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
.+......+|.+|||+|||.++..++..++.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3333346788999999999999998877663
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.06 E-value=0.33 Score=43.44 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC---CceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~---~~~lil~P~~~ 79 (411)
...++.++||||||..+..++.... .+++.+-...+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 5888999999999999877765542 46666665544
No 480
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.04 E-value=4.4 Score=36.08 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=28.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc-C--hhhHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQ 87 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P-~--~~l~~q~~~~ 87 (411)
....+.+++|+|||..+..++..+ +.++.++.. . .....||...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 477889999999999876665443 345555553 1 2456676643
No 481
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.98 E-value=0.2 Score=43.60 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=27.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~ 79 (411)
+++.+.|.||+|||.++..++.++ +.+++++=|.-+
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 489999999999999987776543 357777766554
No 482
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.98 E-value=2.5 Score=38.73 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 29 ~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...+.+...+..+. ++..++.+|.|+|||..|...+..+
T Consensus 11 ~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 11 NIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred HHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 33444444454443 3345789999999999998887665
No 483
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.96 E-value=0.31 Score=49.72 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|.+-|++++... ..+.+|.|..|+|||.+...-++++ ...+++++=++..+.++..++.+..+
T Consensus 2 ~Ln~~Q~~av~~~-----~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP-----DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC-----CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999775 2488999999999999866655443 13799999888889999999988765
No 484
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.91 E-value=0.24 Score=48.05 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.++..++.+|+|+|||++|-.++...+..++.+-+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 45788999999999999998888888877666654
No 485
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.89 E-value=0.7 Score=42.66 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---------cCCceEEEEcChhh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAVS 80 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---------~~~~~lil~P~~~l 80 (411)
.++.++.++ ...-..+.+++|+|||..++.++.. ...+++|+.---..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f 169 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTF 169 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCc
Confidence 345555443 1234567899999999998766522 12478888765543
No 486
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.87 E-value=0.28 Score=44.49 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
+..|+.+|+|+|||-+|+.++..++.
T Consensus 66 rgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 66 RGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46788999999999999999999974
No 487
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.84 E-value=2.1 Score=42.22 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHH---Hhc-CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCc
Q 015196 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAA---CRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (411)
Q Consensus 32 ~ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~---~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~ 105 (411)
..++.++.++ ...-.++.+++|+|||..++..+ +.. +.++++++-.-. .++..+.+..+ +-
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~-~~~i~~~~~~~------------g~ 84 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES-PEDIIRNVASF------------GW 84 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC-HHHHHHHHHHc------------CC
Q ss_pred hhhhhcCCCcEEEEeccee------cccCCCChhhHHHHHHHhcCCccEEEEe
Q 015196 106 SKERFRGNAGVVVTTYNMV------AFGGKRSEESEKIIEEIRNREWGLLLMD 152 (411)
Q Consensus 106 ~~~~~~~~~~I~v~t~~~l------~~~~~~~~~~~~~~~~~~~~~~~lvIiD 152 (411)
....+.....+.+...... ........-...+...+...+.+.+|+|
T Consensus 85 d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVID 137 (509)
T PRK09302 85 DLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLD 137 (509)
T ss_pred CHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEEC
No 488
>PF12846 AAA_10: AAA-like domain
Probab=91.78 E-value=0.23 Score=45.06 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=26.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~ 79 (411)
+++++.++||+|||..+..++. ..+..++++=|..+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 4889999999999998776654 34556777755433
No 489
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.69 E-value=2 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.2
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.++.+|+|+|||.++-.++..++
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78899999999999877766554
No 490
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.67 E-value=0.45 Score=40.97 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=30.8
Q ss_pred HHHHHHhCCC--CcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEc
Q 015196 33 SLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (411)
Q Consensus 33 ai~~~~~~~~--~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P 76 (411)
.++.++.++- ..-..+.+++|+|||..++..+.. .+.+++++.-
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4566665431 234678899999999998887654 3568888853
No 491
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.51 E-value=0.3 Score=46.65 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+..+++.+|+|+|||.+|-.++..+...++-+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 4567899999999999999888888776655554
No 492
>PRK09183 transposase/IS protein; Provisional
Probab=91.50 E-value=0.53 Score=41.75 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=26.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ 83 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q 83 (411)
.+.++.+|+|+|||..+..+.. ..+.+++++. ...+..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 4788999999999999777643 3345666654 3344433
No 493
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.49 E-value=0.24 Score=45.46 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC--ceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~--~~lil~P 76 (411)
+..++.+|+|+|||-+|+.++..++. ++..++-
T Consensus 51 r~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg 85 (398)
T PF06068_consen 51 RAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG 85 (398)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG
T ss_pred cEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc
Confidence 56788899999999999999999984 4444443
No 494
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.49 E-value=0.44 Score=44.00 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
+++++.+|+|+|||..+-.++..++.++..+-.+..+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 4999999999999999999998888766666555443
No 495
>PHA00350 putative assembly protein
Probab=91.48 E-value=0.47 Score=44.50 Aligned_cols=18 Identities=33% Similarity=0.049 Sum_probs=15.6
Q ss_pred ceEEEcCCCCCHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~ 62 (411)
-.++.+.+|+|||+.|+.
T Consensus 3 I~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVV 20 (399)
T ss_pred eEEEecCCCCchhHHHHH
Confidence 357889999999999886
No 496
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.46 E-value=0.88 Score=42.42 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=21.2
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+++..+++++|.|||+++-.....+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 356788999999999999777665553
No 497
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.45 E-value=0.33 Score=48.27 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.-+.+.|.+.+..++... ..-.++.+|||||||.+....+..++
T Consensus 298 lg~~~~~~~~l~~~~~~~-~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKP-QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCCHHHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 346778888888776542 13567899999999998766665543
No 498
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=91.44 E-value=0.28 Score=46.12 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=24.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~l 72 (411)
+++.++.+|||+|||.++-.++..++..++
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468899999999999999888877764433
No 499
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=91.43 E-value=0.032 Score=51.33 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
-|.+.|.++|.-++.++ +++..|.||||||-....++
T Consensus 24 lptdvqaeaiplilggg---dvlmaaetgsgktgaf~lpi 60 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGG---DVLMAAETGSGKTGAFCLPI 60 (725)
T ss_pred cccccccccccEEecCC---cEEEEeccCCCCccceehhh
Confidence 57999999999999886 89999999999997654443
No 500
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.38 E-value=0.23 Score=45.08 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
-.++.+|||+|||.+|..++.+++.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCC
Confidence 5678899999999999999888763
Done!