Query 015196
Match_columns 411
No_of_seqs 153 out of 1663
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fwr_A DNA repair protein RAD2 100.0 5.3E-48 1.8E-52 373.8 27.0 340 20-397 88-466 (472)
2 2oca_A DAR protein, ATP-depend 100.0 1.3E-42 4.3E-47 339.3 27.7 360 23-410 111-499 (510)
3 1z63_A Helicase of the SNF2/RA 100.0 6.6E-41 2.3E-45 326.4 33.0 346 22-394 34-462 (500)
4 1wp9_A ATP-dependent RNA helic 100.0 2.5E-40 8.6E-45 321.5 24.4 344 23-394 7-484 (494)
5 3mwy_W Chromo domain-containin 100.0 6.2E-39 2.1E-43 327.0 33.1 347 23-397 234-696 (800)
6 3h1t_A Type I site-specific re 100.0 1.1E-39 3.9E-44 323.5 24.3 323 22-361 175-545 (590)
7 1z3i_X Similar to RAD54-like; 100.0 4.8E-38 1.6E-42 312.9 33.3 345 24-395 54-538 (644)
8 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-38 1.3E-42 311.2 25.1 339 23-391 5-514 (556)
9 2db3_A ATP-dependent RNA helic 100.0 1.4E-37 4.8E-42 296.7 27.6 290 25-361 78-396 (434)
10 1s2m_A Putative ATP-dependent 100.0 6.4E-38 2.2E-42 297.0 24.3 291 25-361 43-354 (400)
11 3tbk_A RIG-I helicase domain; 100.0 1.5E-37 5.2E-42 306.8 27.7 338 23-390 2-512 (555)
12 2z0m_A 337AA long hypothetical 100.0 5.1E-38 1.7E-42 290.7 21.8 287 25-361 16-312 (337)
13 2j0s_A ATP-dependent RNA helic 100.0 7.5E-38 2.6E-42 297.4 23.1 292 25-361 59-372 (410)
14 1xti_A Probable ATP-dependent 100.0 1.8E-37 6.2E-42 292.9 25.1 292 25-361 30-346 (391)
15 1hv8_A Putative ATP-dependent 100.0 3.8E-37 1.3E-41 288.2 25.0 289 24-361 27-334 (367)
16 3pey_A ATP-dependent RNA helic 100.0 4.2E-37 1.4E-41 290.8 24.8 295 24-361 26-345 (395)
17 3dmq_A RNA polymerase-associat 100.0 1.8E-36 6E-41 313.3 31.6 347 21-395 149-625 (968)
18 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-36 6E-41 309.8 29.9 339 23-391 246-755 (797)
19 3eiq_A Eukaryotic initiation f 100.0 2.8E-37 9.6E-42 293.9 21.9 293 24-361 61-376 (414)
20 2i4i_A ATP-dependent RNA helic 100.0 7.8E-37 2.7E-41 291.1 22.7 293 24-361 36-372 (417)
21 2v1x_A ATP-dependent DNA helic 100.0 6E-36 2E-40 293.5 27.5 294 25-361 44-363 (591)
22 3fht_A ATP-dependent RNA helic 100.0 6.4E-36 2.2E-40 284.3 26.1 297 24-361 46-368 (412)
23 4gl2_A Interferon-induced heli 100.0 3.9E-36 1.3E-40 304.5 25.7 330 22-360 4-509 (699)
24 4a2w_A RIG-I, retinoic acid in 100.0 1.2E-35 4E-40 306.8 27.5 342 20-391 243-755 (936)
25 1fuu_A Yeast initiation factor 100.0 4E-38 1.4E-42 297.7 8.3 294 24-361 42-355 (394)
26 1oyw_A RECQ helicase, ATP-depe 100.0 1.9E-35 6.5E-40 287.2 26.9 282 25-361 25-332 (523)
27 3sqw_A ATP-dependent RNA helic 100.0 1.9E-35 6.6E-40 292.2 26.6 303 25-361 43-387 (579)
28 3i5x_A ATP-dependent RNA helic 100.0 2E-35 7E-40 291.8 26.7 303 25-361 94-438 (563)
29 3oiy_A Reverse gyrase helicase 100.0 4.9E-35 1.7E-39 278.2 27.3 280 23-361 19-350 (414)
30 2eyq_A TRCF, transcription-rep 100.0 5.4E-35 1.9E-39 305.9 29.0 319 21-402 599-939 (1151)
31 2xgj_A ATP-dependent RNA helic 100.0 9.4E-35 3.2E-39 299.8 30.3 331 21-386 82-500 (1010)
32 3l9o_A ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 305.7 25.5 334 21-388 180-600 (1108)
33 2ykg_A Probable ATP-dependent 100.0 9.2E-35 3.2E-39 294.3 23.0 335 24-388 12-519 (696)
34 3fho_A ATP-dependent RNA helic 100.0 2.8E-36 9.6E-41 293.1 10.1 295 25-361 141-459 (508)
35 3fmp_B ATP-dependent RNA helic 100.0 1.1E-35 3.6E-40 288.0 11.5 297 24-361 113-435 (479)
36 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.1E-34 3.1E-38 290.9 24.1 326 23-362 269-695 (1038)
37 1gm5_A RECG; helicase, replica 100.0 1.2E-34 3.9E-39 290.3 15.7 291 22-361 365-686 (780)
38 4a4z_A Antiviral helicase SKI2 100.0 6.9E-33 2.4E-37 286.0 28.8 319 21-361 35-479 (997)
39 2p6r_A Afuhel308 helicase; pro 100.0 2E-33 6.9E-38 283.7 22.1 311 25-386 25-389 (702)
40 2zj8_A DNA helicase, putative 100.0 2.1E-33 7.1E-38 284.4 20.3 308 25-386 23-388 (720)
41 2va8_A SSO2462, SKI2-type heli 100.0 1.8E-33 6.2E-38 285.0 18.0 318 25-386 30-409 (715)
42 4f92_B U5 small nuclear ribonu 100.0 9.1E-32 3.1E-36 289.3 24.0 301 25-362 79-461 (1724)
43 4ddu_A Reverse gyrase; topoiso 100.0 2.6E-30 8.9E-35 269.0 27.9 261 23-342 76-387 (1104)
44 4f92_B U5 small nuclear ribonu 100.0 1.8E-30 6.3E-35 279.2 26.5 303 25-361 926-1295(1724)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-28 4.2E-33 256.6 22.5 260 23-342 55-352 (1054)
46 2jlq_A Serine protease subunit 100.0 1.1E-28 3.8E-33 235.8 14.1 262 25-361 4-299 (451)
47 2v6i_A RNA helicase; membrane, 100.0 3E-28 1E-32 231.3 16.9 246 44-361 3-279 (431)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.4E-27 4.9E-32 240.6 20.2 288 25-360 93-432 (773)
49 1yks_A Genome polyprotein [con 100.0 9.2E-29 3.1E-33 235.3 9.4 245 44-360 9-286 (440)
50 2whx_A Serine protease/ntpase/ 99.9 2.3E-27 7.8E-32 233.5 16.4 261 25-361 171-466 (618)
51 3o8b_A HCV NS3 protease/helica 99.9 1.5E-27 5.2E-32 232.7 14.3 256 26-361 218-504 (666)
52 2wv9_A Flavivirin protease NS2 99.9 2.1E-28 7.3E-33 242.2 8.4 262 25-360 215-520 (673)
53 2z83_A Helicase/nucleoside tri 99.9 8.1E-28 2.8E-32 230.2 12.0 247 44-361 22-301 (459)
54 3rc3_A ATP-dependent RNA helic 99.9 2.4E-26 8.3E-31 226.9 20.1 247 44-361 156-431 (677)
55 1tf5_A Preprotein translocase 99.9 9E-26 3.1E-30 222.2 16.0 321 23-361 81-534 (844)
56 2fsf_A Preprotein translocase 99.9 9.9E-25 3.4E-29 214.3 20.1 105 252-361 426-572 (853)
57 1nkt_A Preprotein translocase 99.9 1.1E-23 3.7E-28 207.3 21.8 316 23-361 109-606 (922)
58 2fz4_A DNA repair protein RAD2 99.9 5.6E-24 1.9E-28 185.3 17.1 151 15-187 82-234 (237)
59 1c4o_A DNA nucleotide excision 99.9 2.1E-22 7.1E-27 200.3 24.3 93 267-360 438-539 (664)
60 1rif_A DAR protein, DNA helica 99.9 1.6E-23 5.5E-28 188.0 13.5 161 24-198 112-279 (282)
61 2d7d_A Uvrabc system protein B 99.9 5.2E-21 1.8E-25 190.1 28.8 93 267-360 444-545 (661)
62 1vec_A ATP-dependent RNA helic 99.8 3.9E-21 1.3E-25 164.3 11.2 148 25-183 25-189 (206)
63 1t6n_A Probable ATP-dependent 99.8 5.9E-21 2E-25 164.9 11.4 149 25-184 36-203 (220)
64 3b6e_A Interferon-induced heli 99.8 8.1E-21 2.8E-25 163.6 11.8 154 21-180 29-216 (216)
65 3jux_A Protein translocase sub 99.8 2.7E-19 9.2E-24 172.6 22.1 91 267-361 473-576 (822)
66 1q0u_A Bstdead; DEAD protein, 99.8 5.9E-21 2E-25 164.8 8.8 149 24-183 25-193 (219)
67 1wrb_A DJVLGB; RNA helicase, D 99.8 1.8E-20 6.1E-25 165.5 11.8 149 24-183 44-221 (253)
68 3iuy_A Probable ATP-dependent 99.8 9E-21 3.1E-25 164.7 9.5 148 24-183 41-210 (228)
69 1qde_A EIF4A, translation init 99.8 1.3E-20 4.5E-25 163.3 10.2 149 24-183 35-198 (224)
70 3ber_A Probable ATP-dependent 99.8 1.1E-20 3.9E-25 166.0 9.8 149 25-183 65-229 (249)
71 2gxq_A Heat resistant RNA depe 99.8 1.6E-20 5.5E-25 160.6 10.3 147 24-183 22-187 (207)
72 3ly5_A ATP-dependent RNA helic 99.8 8.4E-21 2.9E-25 168.2 8.8 149 25-183 76-244 (262)
73 2vl7_A XPD; helicase, unknown 99.8 8.7E-19 3E-23 170.8 23.4 67 23-91 5-74 (540)
74 2pl3_A Probable ATP-dependent 99.8 1.6E-20 5.3E-25 164.1 9.7 150 24-183 46-214 (236)
75 2oxc_A Probable ATP-dependent 99.8 3.7E-20 1.3E-24 161.0 11.3 148 25-183 46-210 (230)
76 3fe2_A Probable ATP-dependent 99.8 2.8E-20 9.7E-25 163.0 9.0 148 25-183 51-219 (242)
77 3bor_A Human initiation factor 99.8 2.7E-20 9.3E-25 162.5 8.5 148 25-183 52-216 (237)
78 3dkp_A Probable ATP-dependent 99.8 2.3E-19 7.8E-24 157.6 13.2 150 25-183 51-222 (245)
79 2hjv_A ATP-dependent RNA helic 99.8 1.9E-18 6.5E-23 141.5 15.0 106 251-361 21-131 (163)
80 1z5z_A Helicase of the SNF2/RA 99.8 2.2E-18 7.4E-23 152.5 16.1 133 250-395 95-234 (271)
81 1t5i_A C_terminal domain of A 99.8 1.6E-18 5.4E-23 143.1 13.6 106 251-361 17-127 (172)
82 2rb4_A ATP-dependent RNA helic 99.8 3.7E-18 1.3E-22 141.5 15.1 106 252-361 21-136 (175)
83 3eaq_A Heat resistant RNA depe 99.8 6.5E-18 2.2E-22 144.4 14.4 109 248-361 14-127 (212)
84 1fuk_A Eukaryotic initiation f 99.8 3.3E-18 1.1E-22 140.4 11.3 105 252-361 17-126 (165)
85 2jgn_A DBX, DDX3, ATP-dependen 99.8 6.5E-18 2.2E-22 141.1 13.2 107 251-361 31-142 (185)
86 3crv_A XPD/RAD3 related DNA he 99.8 4.8E-16 1.7E-20 152.0 28.2 79 24-104 2-83 (551)
87 3fmo_B ATP-dependent RNA helic 99.7 3.2E-18 1.1E-22 154.3 10.1 152 24-183 113-279 (300)
88 2p6n_A ATP-dependent RNA helic 99.7 2.4E-17 8.3E-22 138.2 13.7 92 268-361 54-150 (191)
89 3i32_A Heat resistant RNA depe 99.7 5.9E-17 2E-21 145.0 11.8 109 248-361 11-124 (300)
90 2ipc_A Preprotein translocase 99.7 4.5E-16 1.6E-20 153.1 17.9 123 23-158 77-215 (997)
91 2yjt_D ATP-dependent RNA helic 99.5 2.1E-18 7.3E-23 142.2 0.0 107 250-361 15-126 (170)
92 3llm_A ATP-dependent RNA helic 99.6 9.7E-15 3.3E-19 127.0 15.1 147 23-183 59-220 (235)
93 4a15_A XPD helicase, ATP-depen 98.6 7.4E-08 2.5E-12 95.0 8.7 67 24-92 2-75 (620)
94 4b3f_X DNA-binding protein smu 98.6 2E-07 6.9E-12 92.8 10.5 66 24-91 188-256 (646)
95 3e1s_A Exodeoxyribonuclease V, 98.5 7.3E-07 2.5E-11 87.0 12.8 128 23-183 187-317 (574)
96 3hgt_A HDA1 complex subunit 3; 98.5 6E-07 2.1E-11 79.5 10.8 128 249-392 107-244 (328)
97 2gk6_A Regulator of nonsense t 98.5 2.4E-06 8.3E-11 84.5 16.4 65 24-91 179-247 (624)
98 2xzl_A ATP-dependent helicase 98.4 2.6E-06 8.8E-11 86.3 14.6 65 24-91 359-427 (802)
99 1w36_D RECD, exodeoxyribonucle 98.4 1.2E-06 4.2E-11 86.2 10.8 138 27-181 151-298 (608)
100 2wjy_A Regulator of nonsense t 98.3 4.6E-06 1.6E-10 84.4 14.0 65 24-91 355-423 (800)
101 3upu_A ATP-dependent DNA helic 98.3 3.1E-06 1.1E-10 80.7 10.6 134 25-182 25-165 (459)
102 3vkw_A Replicase large subunit 98.0 6.9E-06 2.4E-10 76.3 6.4 109 44-182 162-270 (446)
103 2o0j_A Terminase, DNA packagin 98.0 0.00018 6.2E-09 66.1 15.4 143 23-184 161-316 (385)
104 3lfu_A DNA helicase II; SF1 he 97.9 9.7E-05 3.3E-09 73.7 12.7 65 25-94 9-80 (647)
105 3cpe_A Terminase, DNA packagin 97.8 0.00059 2E-08 67.0 16.7 143 23-184 161-316 (592)
106 1a5t_A Delta prime, HOLB; zinc 97.6 0.00058 2E-08 62.0 12.3 43 26-68 3-49 (334)
107 3pvs_A Replication-associated 97.5 0.00037 1.3E-08 65.8 10.1 43 33-75 40-82 (447)
108 2orw_A Thymidine kinase; TMTK, 97.5 0.0005 1.7E-08 56.5 9.0 34 45-78 5-41 (184)
109 2p65_A Hypothetical protein PF 97.4 0.00079 2.7E-08 55.0 10.0 43 25-67 25-67 (187)
110 1jbk_A CLPB protein; beta barr 97.4 0.0017 5.8E-08 53.2 11.6 44 24-67 24-67 (195)
111 2b8t_A Thymidine kinase; deoxy 97.4 0.00042 1.4E-08 58.6 7.2 35 45-79 14-51 (223)
112 3u61_B DNA polymerase accessor 97.3 0.0022 7.6E-08 57.8 12.6 54 25-78 29-83 (324)
113 2j9r_A Thymidine kinase; TK1, 97.3 0.0012 4.2E-08 54.9 9.6 34 46-79 31-67 (214)
114 3eie_A Vacuolar protein sortin 97.3 0.00096 3.3E-08 60.2 9.4 34 43-76 51-84 (322)
115 1xx6_A Thymidine kinase; NESG, 97.2 0.0012 4E-08 54.5 8.6 34 45-78 10-46 (191)
116 4b4t_J 26S protease regulatory 97.2 0.0011 3.7E-08 61.0 9.0 51 27-77 153-216 (405)
117 3co5_A Putative two-component 97.2 0.00074 2.5E-08 52.9 6.5 25 44-68 28-52 (143)
118 4a15_A XPD helicase, ATP-depen 97.2 0.0022 7.5E-08 63.2 11.2 92 268-362 448-574 (620)
119 2qby_B CDC6 homolog 3, cell di 97.2 0.0025 8.4E-08 58.9 11.0 46 22-67 20-69 (384)
120 1l8q_A Chromosomal replication 97.1 0.0065 2.2E-07 54.7 13.0 34 43-76 37-73 (324)
121 3ec2_A DNA replication protein 97.1 0.0067 2.3E-07 49.4 11.9 58 27-85 16-83 (180)
122 1d2n_A N-ethylmaleimide-sensit 97.1 0.0024 8.1E-08 56.0 9.5 35 41-75 62-96 (272)
123 3vfd_A Spastin; ATPase, microt 97.1 0.0024 8.3E-08 59.2 9.9 34 43-76 148-181 (389)
124 2chg_A Replication factor C sm 97.0 0.0085 2.9E-07 50.2 12.5 44 24-67 19-62 (226)
125 2qp9_X Vacuolar protein sortin 97.0 0.0016 5.6E-08 59.5 8.2 33 43-75 84-116 (355)
126 4b4t_L 26S protease subunit RP 97.0 0.0015 5.2E-08 60.9 7.8 36 41-76 213-248 (437)
127 2zan_A Vacuolar protein sortin 97.0 0.0018 6.1E-08 61.2 8.5 33 42-74 166-199 (444)
128 1uaa_A REP helicase, protein ( 97.0 0.00089 3E-08 67.0 6.7 75 25-104 2-86 (673)
129 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.001 3.6E-08 59.9 6.5 33 43-75 45-78 (322)
130 3syl_A Protein CBBX; photosynt 97.0 0.0077 2.6E-07 53.7 12.2 26 42-67 66-91 (309)
131 1fnn_A CDC6P, cell division co 97.0 0.0079 2.7E-07 55.5 12.6 53 23-75 18-80 (389)
132 2zpa_A Uncharacterized protein 96.9 0.0019 6.3E-08 63.3 8.1 119 24-185 174-292 (671)
133 4b4t_I 26S protease regulatory 96.9 0.002 6.7E-08 59.6 7.6 50 27-76 187-249 (437)
134 4b4t_H 26S protease regulatory 96.9 0.0022 7.7E-08 59.8 7.9 51 27-77 214-277 (467)
135 3pfi_A Holliday junction ATP-d 96.9 0.0082 2.8E-07 54.4 11.7 49 26-74 33-86 (338)
136 3e2i_A Thymidine kinase; Zn-bi 96.9 0.005 1.7E-07 51.1 9.1 35 45-79 30-67 (219)
137 3h4m_A Proteasome-activating n 96.9 0.0012 4.2E-08 58.3 5.9 52 25-76 20-84 (285)
138 3n70_A Transport activator; si 96.9 0.0019 6.6E-08 50.6 6.2 24 44-67 25-48 (145)
139 2z4s_A Chromosomal replication 96.8 0.016 5.4E-07 54.6 13.5 34 43-76 130-168 (440)
140 1hqc_A RUVB; extended AAA-ATPa 96.8 0.012 4.2E-07 52.8 12.0 51 24-74 14-69 (324)
141 1njg_A DNA polymerase III subu 96.7 0.017 5.7E-07 49.1 12.0 44 24-67 25-69 (250)
142 3d8b_A Fidgetin-like protein 1 96.7 0.0046 1.6E-07 56.5 8.7 35 42-76 116-150 (357)
143 2gno_A DNA polymerase III, gam 96.7 0.011 3.7E-07 52.6 10.3 33 33-65 8-40 (305)
144 2bjv_A PSP operon transcriptio 96.6 0.012 4E-07 51.3 10.3 25 44-68 30-54 (265)
145 2v1u_A Cell division control p 96.6 0.0088 3E-07 55.1 9.7 45 23-67 20-68 (387)
146 1iqp_A RFCS; clamp loader, ext 96.5 0.02 7E-07 51.3 11.6 42 26-67 29-70 (327)
147 1sxj_B Activator 1 37 kDa subu 96.5 0.012 4.2E-07 52.7 9.9 43 25-67 24-66 (323)
148 1sxj_A Activator 1 95 kDa subu 96.5 0.017 5.8E-07 55.6 11.2 34 43-76 77-110 (516)
149 1pjr_A PCRA; DNA repair, DNA r 96.5 0.0045 1.5E-07 62.3 7.4 64 25-93 11-81 (724)
150 3hu3_A Transitional endoplasmi 96.5 0.01 3.5E-07 56.5 9.5 34 42-75 237-270 (489)
151 2orv_A Thymidine kinase; TP4A 96.4 0.0087 3E-07 50.3 7.7 35 45-79 21-58 (234)
152 1w4r_A Thymidine kinase; type 96.4 0.0062 2.1E-07 49.8 6.5 34 45-78 22-58 (195)
153 2qby_A CDC6 homolog 1, cell di 96.4 0.011 3.9E-07 54.3 8.9 54 22-75 20-83 (386)
154 3uk6_A RUVB-like 2; hexameric 96.2 0.034 1.2E-06 50.9 11.1 26 44-69 71-96 (368)
155 1sxj_D Activator 1 41 kDa subu 96.2 0.016 5.6E-07 52.6 8.7 41 27-67 42-82 (353)
156 1ojl_A Transcriptional regulat 96.1 0.019 6.5E-07 51.1 8.7 25 43-67 25-49 (304)
157 1qvr_A CLPB protein; coiled co 96.1 0.026 8.8E-07 58.0 10.7 41 27-67 175-215 (854)
158 4fcw_A Chaperone protein CLPB; 96.0 0.0099 3.4E-07 53.0 6.5 24 44-67 48-71 (311)
159 1jr3_A DNA polymerase III subu 96.0 0.036 1.2E-06 50.7 10.4 44 25-68 19-63 (373)
160 2chq_A Replication factor C sm 96.0 0.014 4.8E-07 52.1 7.4 41 27-67 22-62 (319)
161 4b4t_M 26S protease regulatory 95.8 0.008 2.7E-07 56.0 4.9 52 26-77 185-249 (434)
162 3cf2_A TER ATPase, transitiona 95.8 0.027 9.3E-07 56.6 8.9 34 42-75 237-270 (806)
163 4b4t_K 26S protease regulatory 95.6 0.011 3.8E-07 55.0 4.8 37 41-77 204-240 (428)
164 1g5t_A COB(I)alamin adenosyltr 95.5 0.028 9.4E-07 46.1 6.5 35 44-78 29-66 (196)
165 2kjq_A DNAA-related protein; s 95.5 0.028 9.6E-07 44.1 6.4 23 44-66 37-59 (149)
166 3u4q_A ATP-dependent helicase/ 95.5 0.014 5E-07 62.2 6.1 65 23-92 8-81 (1232)
167 1w5s_A Origin recognition comp 95.5 0.092 3.1E-06 48.7 10.8 46 22-67 22-76 (412)
168 1r6b_X CLPA protein; AAA+, N-t 95.4 0.057 2E-06 54.7 10.0 41 27-67 191-231 (758)
169 2cvh_A DNA repair and recombin 95.3 0.14 4.7E-06 42.8 10.6 46 33-78 8-55 (220)
170 1r6b_X CLPA protein; AAA+, N-t 95.3 0.0085 2.9E-07 60.8 3.4 30 45-74 490-519 (758)
171 3hjh_A Transcription-repair-co 95.2 0.031 1.1E-06 53.0 6.8 81 44-127 15-116 (483)
172 1sxj_E Activator 1 40 kDa subu 95.2 0.12 3.9E-06 47.0 10.5 40 28-67 20-60 (354)
173 3io5_A Recombination and repai 95.1 0.083 2.8E-06 46.7 8.4 99 33-158 13-124 (333)
174 3t15_A Ribulose bisphosphate c 94.9 0.023 7.7E-07 50.3 4.5 35 42-76 35-69 (293)
175 3pxi_A Negative regulator of g 94.6 0.023 7.9E-07 57.5 4.2 23 45-67 523-545 (758)
176 1qvr_A CLPB protein; coiled co 94.5 0.022 7.5E-07 58.5 4.0 24 44-67 589-612 (854)
177 1n0w_A DNA repair protein RAD5 94.5 0.16 5.6E-06 43.0 8.9 46 33-78 12-68 (243)
178 3kl4_A SRP54, signal recogniti 94.4 0.42 1.4E-05 44.4 11.9 32 44-75 98-132 (433)
179 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.053 1.8E-06 46.8 5.3 34 43-76 39-72 (262)
180 1tue_A Replication protein E1; 94.2 0.033 1.1E-06 45.9 3.5 41 31-71 45-86 (212)
181 2zr9_A Protein RECA, recombina 94.1 0.37 1.3E-05 43.5 10.7 48 32-79 47-100 (349)
182 3hr8_A Protein RECA; alpha and 94.0 0.32 1.1E-05 44.0 10.0 51 32-82 47-103 (356)
183 1ofh_A ATP-dependent HSL prote 93.9 0.1 3.5E-06 46.2 6.7 34 43-76 50-83 (310)
184 3dm5_A SRP54, signal recogniti 93.9 0.67 2.3E-05 43.1 12.1 33 43-75 100-135 (443)
185 1u94_A RECA protein, recombina 93.9 0.42 1.4E-05 43.3 10.6 49 32-80 49-103 (356)
186 3hws_A ATP-dependent CLP prote 93.7 0.06 2.1E-06 49.2 4.8 34 43-76 51-84 (363)
187 3bos_A Putative DNA replicatio 93.7 0.11 3.8E-06 43.9 6.2 45 31-75 40-87 (242)
188 1xp8_A RECA protein, recombina 93.6 0.34 1.2E-05 44.1 9.5 47 33-79 61-113 (366)
189 1v5w_A DMC1, meiotic recombina 93.6 0.18 6.1E-06 45.6 7.6 47 33-79 110-167 (343)
190 2w58_A DNAI, primosome compone 93.4 0.088 3E-06 43.4 5.0 32 44-75 55-89 (202)
191 3te6_A Regulatory protein SIR3 93.4 0.057 2E-06 48.1 3.9 41 27-67 25-69 (318)
192 3cf0_A Transitional endoplasmi 93.4 0.076 2.6E-06 47.1 4.8 34 42-75 48-81 (301)
193 2r6a_A DNAB helicase, replicat 93.4 0.44 1.5E-05 44.8 10.3 55 33-88 192-251 (454)
194 3b9p_A CG5977-PA, isoform A; A 93.1 0.099 3.4E-06 46.1 5.2 33 43-75 54-86 (297)
195 1u0j_A DNA replication protein 93.1 0.23 7.9E-06 42.8 7.2 33 34-66 93-127 (267)
196 2q6t_A DNAB replication FORK h 93.1 0.5 1.7E-05 44.3 10.1 56 33-89 189-249 (444)
197 1lv7_A FTSH; alpha/beta domain 93.0 0.094 3.2E-06 45.2 4.7 32 43-74 45-76 (257)
198 2w0m_A SSO2452; RECA, SSPF, un 92.7 0.24 8.1E-06 41.6 6.8 45 44-89 24-71 (235)
199 3k1j_A LON protease, ATP-depen 92.5 0.7 2.4E-05 45.3 10.6 24 44-67 61-84 (604)
200 1c9k_A COBU, adenosylcobinamid 92.4 0.13 4.6E-06 41.4 4.4 45 46-91 2-46 (180)
201 1um8_A ATP-dependent CLP prote 92.3 0.14 4.7E-06 47.0 5.1 32 43-74 72-103 (376)
202 2qgz_A Helicase loader, putati 92.3 0.11 3.8E-06 46.2 4.3 33 43-75 152-188 (308)
203 2r62_A Cell division protease 92.1 0.13 4.6E-06 44.5 4.5 30 43-72 44-73 (268)
204 3cmu_A Protein RECA, recombina 91.9 0.47 1.6E-05 52.5 9.2 47 33-79 1414-1466(2050)
205 2c9o_A RUVB-like 1; hexameric 91.9 0.16 5.3E-06 48.0 5.0 33 43-75 63-97 (456)
206 3a8t_A Adenylate isopentenyltr 91.9 0.095 3.2E-06 46.9 3.2 24 45-68 42-65 (339)
207 2r44_A Uncharacterized protein 91.5 0.22 7.4E-06 44.7 5.3 32 44-75 47-78 (331)
208 3trf_A Shikimate kinase, SK; a 91.2 0.2 6.7E-06 40.6 4.3 27 44-70 6-32 (185)
209 3pxg_A Negative regulator of g 91.0 0.32 1.1E-05 46.1 6.1 41 27-67 185-225 (468)
210 1g41_A Heat shock protein HSLU 90.9 0.24 8.3E-06 46.2 5.1 33 43-75 50-82 (444)
211 2ce7_A Cell division protein F 90.6 0.25 8.6E-06 46.6 5.0 33 43-75 49-81 (476)
212 3foz_A TRNA delta(2)-isopenten 90.6 0.17 5.8E-06 44.6 3.5 24 45-68 12-35 (316)
213 3exa_A TRNA delta(2)-isopenten 90.5 0.17 5.7E-06 44.7 3.4 24 45-68 5-28 (322)
214 1ixz_A ATP-dependent metallopr 90.4 0.29 9.9E-06 41.9 4.9 32 44-75 50-81 (254)
215 1qhx_A CPT, protein (chloramph 90.2 0.36 1.2E-05 38.6 5.0 30 45-74 5-34 (178)
216 2x8a_A Nuclear valosin-contain 90.1 0.29 1E-05 42.6 4.6 32 43-74 44-75 (274)
217 1sxj_C Activator 1 40 kDa subu 90.0 0.39 1.3E-05 43.2 5.6 38 30-67 33-70 (340)
218 1p9r_A General secretion pathw 90.0 0.58 2E-05 43.4 6.7 50 25-75 150-202 (418)
219 2ze6_A Isopentenyl transferase 90.0 0.25 8.5E-06 42.4 4.0 25 45-69 3-27 (253)
220 2z43_A DNA repair and recombin 89.9 0.81 2.8E-05 40.8 7.5 47 33-79 95-152 (324)
221 3cf2_A TER ATPase, transitiona 89.8 0.23 7.8E-06 50.0 4.1 34 42-75 510-543 (806)
222 2zts_A Putative uncharacterize 89.7 0.56 1.9E-05 39.8 6.1 46 44-90 31-80 (251)
223 2qmh_A HPR kinase/phosphorylas 89.6 0.25 8.6E-06 40.4 3.5 25 44-68 35-59 (205)
224 3lda_A DNA repair protein RAD5 89.2 1.5 5.3E-05 40.2 8.9 46 33-78 166-222 (400)
225 3vaa_A Shikimate kinase, SK; s 89.2 0.37 1.3E-05 39.5 4.4 27 44-70 26-52 (199)
226 3crm_A TRNA delta(2)-isopenten 89.1 0.26 8.8E-06 43.9 3.5 24 45-68 7-30 (323)
227 1iy2_A ATP-dependent metallopr 88.9 0.43 1.5E-05 41.5 4.9 32 44-75 74-105 (278)
228 1ex7_A Guanylate kinase; subst 88.7 0.41 1.4E-05 38.8 4.2 27 44-70 2-28 (186)
229 2vhj_A Ntpase P4, P4; non- hyd 88.7 0.2 7E-06 44.4 2.5 32 45-76 125-156 (331)
230 3kb2_A SPBC2 prophage-derived 88.4 0.4 1.4E-05 38.0 4.0 25 45-69 3-27 (173)
231 2eyq_A TRCF, transcription-rep 88.2 0.5 1.7E-05 50.0 5.5 79 46-127 20-119 (1151)
232 2dr3_A UPF0273 protein PH0284; 88.1 0.84 2.9E-05 38.6 6.1 46 44-90 24-72 (247)
233 3lw7_A Adenylate kinase relate 87.9 0.4 1.4E-05 38.0 3.7 25 45-70 3-27 (179)
234 3pxi_A Negative regulator of g 87.9 0.83 2.8E-05 46.1 6.8 42 26-67 184-225 (758)
235 3d3q_A TRNA delta(2)-isopenten 87.8 0.34 1.2E-05 43.4 3.4 24 45-68 9-32 (340)
236 2r2a_A Uncharacterized protein 87.8 0.48 1.6E-05 39.0 4.1 21 45-65 7-27 (199)
237 2r8r_A Sensor protein; KDPD, P 87.7 0.62 2.1E-05 39.0 4.7 32 44-75 7-41 (228)
238 3iij_A Coilin-interacting nucl 87.7 0.49 1.7E-05 38.0 4.1 26 44-69 12-37 (180)
239 2dhr_A FTSH; AAA+ protein, hex 87.6 0.58 2E-05 44.5 5.1 34 43-76 64-97 (499)
240 3sxu_A DNA polymerase III subu 87.5 5.5 0.00019 30.8 9.8 117 256-411 28-149 (150)
241 2iyv_A Shikimate kinase, SK; t 87.5 0.55 1.9E-05 37.8 4.3 26 45-70 4-29 (184)
242 3eph_A TRNA isopentenyltransfe 87.3 0.36 1.2E-05 44.3 3.3 25 45-69 4-28 (409)
243 1zuh_A Shikimate kinase; alpha 87.1 0.56 1.9E-05 37.1 4.1 28 44-71 8-35 (168)
244 2oap_1 GSPE-2, type II secreti 87.0 1.1 3.8E-05 42.7 6.6 46 28-75 247-294 (511)
245 2fna_A Conserved hypothetical 86.7 1.3 4.3E-05 39.7 6.8 50 23-76 14-63 (357)
246 3nbx_X ATPase RAVA; AAA+ ATPas 86.6 0.53 1.8E-05 44.8 4.2 25 44-68 42-66 (500)
247 1in4_A RUVB, holliday junction 86.6 0.78 2.7E-05 41.1 5.2 29 43-71 51-79 (334)
248 1e9r_A Conjugal transfer prote 86.5 0.82 2.8E-05 42.7 5.5 39 44-82 54-95 (437)
249 3dl0_A Adenylate kinase; phosp 86.3 0.63 2.2E-05 38.6 4.1 24 45-68 2-25 (216)
250 3fb4_A Adenylate kinase; psych 86.1 0.63 2.2E-05 38.6 4.0 25 45-69 2-26 (216)
251 2rhm_A Putative kinase; P-loop 86.1 0.63 2.1E-05 37.7 3.9 26 44-69 6-31 (193)
252 1gvn_B Zeta; postsegregational 86.0 0.59 2E-05 40.9 4.0 32 44-75 34-65 (287)
253 1e6c_A Shikimate kinase; phosp 85.9 0.69 2.4E-05 36.7 4.1 25 45-69 4-28 (173)
254 1via_A Shikimate kinase; struc 85.8 0.66 2.2E-05 37.0 3.9 24 45-68 6-29 (175)
255 1g8p_A Magnesium-chelatase 38 85.8 0.53 1.8E-05 42.4 3.7 25 44-68 46-70 (350)
256 3cmw_A Protein RECA, recombina 85.7 2.6 8.8E-05 46.1 9.3 88 44-158 733-823 (1706)
257 2c95_A Adenylate kinase 1; tra 85.6 0.68 2.3E-05 37.6 4.0 26 44-69 10-35 (196)
258 3bh0_A DNAB-like replicative h 85.6 1.4 4.8E-05 39.1 6.3 57 33-90 57-117 (315)
259 2cdn_A Adenylate kinase; phosp 85.4 0.78 2.7E-05 37.5 4.2 27 44-70 21-47 (201)
260 1tev_A UMP-CMP kinase; ploop, 85.4 0.69 2.3E-05 37.4 3.9 25 44-68 4-28 (196)
261 1aky_A Adenylate kinase; ATP:A 85.2 0.78 2.7E-05 38.2 4.2 26 44-69 5-30 (220)
262 1kag_A SKI, shikimate kinase I 85.2 0.83 2.8E-05 36.2 4.2 25 44-68 5-29 (173)
263 1zd8_A GTP:AMP phosphotransfer 85.2 0.71 2.4E-05 38.7 4.0 25 44-68 8-32 (227)
264 2i1q_A DNA repair and recombin 85.0 2 6.9E-05 38.1 7.0 58 33-90 86-165 (322)
265 2pt5_A Shikimate kinase, SK; a 85.0 0.83 2.8E-05 36.0 4.1 26 45-70 2-27 (168)
266 3t61_A Gluconokinase; PSI-biol 84.9 0.86 2.9E-05 37.3 4.2 25 44-68 19-43 (202)
267 3dzd_A Transcriptional regulat 84.9 2 6.9E-05 39.0 7.1 37 44-80 153-190 (368)
268 1gm5_A RECG; helicase, replica 84.9 1.8 6.1E-05 43.7 7.2 72 268-340 417-498 (780)
269 1qf9_A UMP/CMP kinase, protein 84.8 0.73 2.5E-05 37.2 3.7 24 45-68 8-31 (194)
270 3cm0_A Adenylate kinase; ATP-b 84.7 0.74 2.5E-05 37.0 3.7 24 45-68 6-29 (186)
271 3nwn_A Kinesin-like protein KI 84.6 0.85 2.9E-05 41.2 4.3 34 29-63 84-125 (359)
272 1y63_A LMAJ004144AAA protein; 84.6 0.76 2.6E-05 37.1 3.7 23 44-66 11-33 (184)
273 3umf_A Adenylate kinase; rossm 84.4 0.83 2.8E-05 38.1 3.9 25 44-68 30-54 (217)
274 1ly1_A Polynucleotide kinase; 84.4 0.68 2.3E-05 36.9 3.3 21 45-65 4-24 (181)
275 1ny5_A Transcriptional regulat 84.4 2.6 9E-05 38.5 7.7 41 44-84 161-203 (387)
276 2bwj_A Adenylate kinase 5; pho 84.3 0.81 2.8E-05 37.2 3.8 24 45-68 14-37 (199)
277 3cmu_A Protein RECA, recombina 84.3 4.8 0.00016 44.8 10.6 100 33-159 370-475 (2050)
278 2vli_A Antibiotic resistance p 84.3 0.68 2.3E-05 37.1 3.3 28 45-72 7-34 (183)
279 2p5t_B PEZT; postsegregational 84.2 0.66 2.3E-05 39.7 3.3 32 44-75 33-64 (253)
280 1ak2_A Adenylate kinase isoenz 84.1 0.91 3.1E-05 38.2 4.2 25 44-68 17-41 (233)
281 1e4v_A Adenylate kinase; trans 84.0 0.87 3E-05 37.7 3.9 24 45-68 2-25 (214)
282 4a1f_A DNAB helicase, replicat 83.9 2.4 8.1E-05 38.0 6.9 55 33-88 35-93 (338)
283 3sr0_A Adenylate kinase; phosp 83.8 0.89 3E-05 37.6 3.8 24 45-68 2-25 (206)
284 2qen_A Walker-type ATPase; unk 83.7 2.3 7.7E-05 38.0 6.9 49 23-75 13-61 (350)
285 3tlx_A Adenylate kinase 2; str 83.4 0.96 3.3E-05 38.4 4.0 27 42-68 28-54 (243)
286 3be4_A Adenylate kinase; malar 83.3 0.8 2.7E-05 38.1 3.4 25 44-68 6-30 (217)
287 1ukz_A Uridylate kinase; trans 83.3 1 3.5E-05 36.8 4.1 25 44-68 16-40 (203)
288 2jaq_A Deoxyguanosine kinase; 83.1 0.94 3.2E-05 36.9 3.8 25 45-69 2-26 (205)
289 3a4m_A L-seryl-tRNA(SEC) kinas 83.0 1.3 4.3E-05 38.1 4.6 31 44-74 5-38 (260)
290 1kht_A Adenylate kinase; phosp 82.8 0.83 2.8E-05 36.8 3.3 24 45-68 5-28 (192)
291 3b85_A Phosphate starvation-in 82.8 1.6 5.6E-05 36.0 5.1 36 24-62 5-41 (208)
292 1zp6_A Hypothetical protein AT 82.7 1.1 3.8E-05 36.1 4.0 30 44-73 10-39 (191)
293 4etp_A Kinesin-like protein KA 82.7 1.1 3.8E-05 41.2 4.3 38 24-62 116-160 (403)
294 1bg2_A Kinesin; motor protein, 82.7 1.1 3.7E-05 39.9 4.2 39 24-63 52-98 (325)
295 1zak_A Adenylate kinase; ATP:A 82.6 0.9 3.1E-05 37.9 3.5 25 44-68 6-30 (222)
296 2y65_A Kinesin, kinesin heavy 82.5 1.1 3.8E-05 40.6 4.2 40 24-63 59-105 (365)
297 4eun_A Thermoresistant glucoki 82.3 1.2 4.2E-05 36.3 4.2 25 44-68 30-54 (200)
298 1f9v_A Kinesin-like protein KA 82.3 1.1 3.8E-05 40.3 4.1 39 24-62 60-104 (347)
299 1ry6_A Internal kinesin; kines 82.2 0.87 3E-05 41.2 3.4 40 24-63 58-105 (360)
300 2bdt_A BH3686; alpha-beta prot 82.1 1.3 4.3E-05 35.8 4.1 24 45-68 4-27 (189)
301 3u4q_B ATP-dependent helicase/ 82.0 1.2 4E-05 47.4 4.9 46 46-92 4-55 (1166)
302 2z0h_A DTMP kinase, thymidylat 82.0 1.4 4.9E-05 35.6 4.4 27 46-72 3-32 (197)
303 3cmw_A Protein RECA, recombina 81.9 4.5 0.00015 44.3 9.2 88 45-159 1433-1523(1706)
304 1ypw_A Transitional endoplasmi 81.9 1.1 3.7E-05 45.5 4.3 34 42-75 237-270 (806)
305 4ag6_A VIRB4 ATPase, type IV s 81.9 1.6 5.6E-05 40.0 5.2 36 44-79 36-74 (392)
306 1t5c_A CENP-E protein, centrom 81.7 1.1 3.6E-05 40.4 3.7 38 24-62 52-97 (349)
307 3m6a_A ATP-dependent protease 81.6 2 6.8E-05 41.4 5.9 31 44-74 109-139 (543)
308 3t0q_A AGR253WP; kinesin, alph 81.5 1.1 3.7E-05 40.4 3.8 39 24-62 61-105 (349)
309 4akg_A Glutathione S-transfera 81.4 1.7 6E-05 49.7 6.1 56 34-91 1260-1317(2695)
310 3tau_A Guanylate kinase, GMP k 81.4 1.1 3.8E-05 36.9 3.6 25 44-68 9-33 (208)
311 1w36_B RECB, exodeoxyribonucle 81.3 2.1 7.2E-05 45.5 6.4 49 44-92 17-80 (1180)
312 3bfn_A Kinesin-like protein KI 81.3 1.3 4.4E-05 40.4 4.1 39 24-62 73-118 (388)
313 1knq_A Gluconate kinase; ALFA/ 81.2 1.3 4.3E-05 35.2 3.8 24 45-68 10-33 (175)
314 2px0_A Flagellar biosynthesis 81.2 1.8 6.1E-05 38.0 5.0 32 44-75 106-141 (296)
315 1kgd_A CASK, peripheral plasma 81.2 1.1 3.7E-05 36.0 3.3 23 45-67 7-29 (180)
316 3dc4_A Kinesin-like protein NO 81.1 1.1 3.7E-05 40.2 3.6 37 24-61 69-113 (344)
317 2pbr_A DTMP kinase, thymidylat 81.0 1.6 5.6E-05 35.1 4.5 22 46-67 3-24 (195)
318 2xb4_A Adenylate kinase; ATP-b 81.0 1.2 4.2E-05 37.1 3.7 24 45-68 2-25 (223)
319 1goj_A Kinesin, kinesin heavy 80.9 1.4 4.7E-05 39.8 4.2 39 24-62 55-100 (355)
320 3b6u_A Kinesin-like protein KI 80.7 1.1 3.8E-05 40.6 3.5 39 24-63 76-122 (372)
321 2vvg_A Kinesin-2; motor protei 80.7 1.2 4E-05 40.1 3.6 38 24-62 64-109 (350)
322 2xxa_A Signal recognition part 80.6 1.7 5.8E-05 40.4 4.9 33 44-76 101-137 (433)
323 2nr8_A Kinesin-like protein KI 80.6 1.5 5.1E-05 39.6 4.3 35 28-63 82-124 (358)
324 4a14_A Kinesin, kinesin-like p 80.6 1.4 4.8E-05 39.6 4.2 39 24-62 58-103 (344)
325 2zfi_A Kinesin-like protein KI 80.5 1.3 4.5E-05 40.1 3.9 35 28-63 68-110 (366)
326 3lre_A Kinesin-like protein KI 80.3 0.78 2.7E-05 41.4 2.4 40 24-63 80-126 (355)
327 2owm_A Nckin3-434, related to 80.3 1.6 5.4E-05 40.7 4.5 35 28-63 115-157 (443)
328 2grj_A Dephospho-COA kinase; T 80.2 1.4 4.7E-05 35.9 3.7 24 45-68 14-37 (192)
329 2qor_A Guanylate kinase; phosp 80.1 1.4 4.8E-05 36.1 3.8 25 44-68 13-37 (204)
330 3gbj_A KIF13B protein; kinesin 80.0 1.6 5.4E-05 39.4 4.3 34 28-62 71-112 (354)
331 1x88_A Kinesin-like protein KI 80.0 1.2 4.1E-05 40.3 3.5 40 24-63 63-109 (359)
332 1nks_A Adenylate kinase; therm 80.0 1.1 3.7E-05 36.1 3.0 24 45-68 3-26 (194)
333 1vma_A Cell division protein F 80.0 1.8 6.3E-05 38.1 4.6 31 45-75 106-139 (306)
334 2rep_A Kinesin-like protein KI 79.7 1.4 4.9E-05 40.0 3.9 40 24-63 91-136 (376)
335 1nlf_A Regulatory protein REPA 79.6 3.7 0.00013 35.5 6.5 46 44-90 31-89 (279)
336 4a74_A DNA repair and recombin 79.5 3.1 0.0001 34.5 5.8 35 44-78 26-69 (231)
337 1v8k_A Kinesin-like protein KI 79.5 1.1 3.8E-05 41.1 3.2 38 24-62 129-174 (410)
338 3bgw_A DNAB-like replicative h 79.5 2.4 8.3E-05 39.6 5.5 56 33-89 186-245 (444)
339 2v54_A DTMP kinase, thymidylat 79.0 1.9 6.6E-05 35.1 4.3 30 44-73 5-35 (204)
340 1pzn_A RAD51, DNA repair and r 78.9 3 0.0001 37.5 5.8 46 33-78 119-175 (349)
341 1zu4_A FTSY; GTPase, signal re 78.9 2.1 7E-05 38.1 4.7 31 45-75 107-140 (320)
342 2plr_A DTMP kinase, probable t 78.7 1.4 4.7E-05 36.2 3.3 25 45-69 6-30 (213)
343 2eyu_A Twitching motility prot 78.6 1.3 4.3E-05 38.2 3.1 21 44-64 26-46 (261)
344 2wbe_C Bipolar kinesin KRP-130 78.6 1.4 4.9E-05 39.9 3.6 39 24-63 75-121 (373)
345 2j37_W Signal recognition part 78.5 2.9 9.9E-05 39.7 5.8 33 44-76 102-137 (504)
346 3ney_A 55 kDa erythrocyte memb 78.3 1.7 5.9E-05 35.5 3.7 24 44-67 20-43 (197)
347 2heh_A KIF2C protein; kinesin, 77.6 1.4 4.7E-05 40.2 3.1 39 24-63 109-155 (387)
348 1cke_A CK, MSSA, protein (cyti 77.5 2 6.7E-05 35.8 4.0 24 45-68 7-30 (227)
349 2pez_A Bifunctional 3'-phospho 77.4 2.6 8.8E-05 33.6 4.5 23 45-67 7-29 (179)
350 3vkg_A Dynein heavy chain, cyt 77.2 3 0.0001 48.5 6.2 57 32-90 1295-1353(3245)
351 2h58_A Kinesin-like protein KI 77.1 2.1 7.3E-05 38.1 4.2 38 24-62 56-100 (330)
352 3a00_A Guanylate kinase, GMP k 76.9 1.9 6.6E-05 34.7 3.6 22 45-66 3-24 (186)
353 1q57_A DNA primase/helicase; d 76.8 3.6 0.00012 39.1 6.0 43 45-88 244-290 (503)
354 3jvv_A Twitching mobility prot 76.4 1.6 5.6E-05 39.4 3.3 31 33-64 114-144 (356)
355 3r20_A Cytidylate kinase; stru 76.3 2.3 8E-05 35.8 4.0 24 45-68 11-34 (233)
356 2v9p_A Replication protein E1; 76.3 2.6 9E-05 37.1 4.5 34 44-77 127-160 (305)
357 3nwj_A ATSK2; P loop, shikimat 76.3 2.3 7.9E-05 36.2 4.0 26 44-69 49-74 (250)
358 2woo_A ATPase GET3; tail-ancho 76.2 3.6 0.00012 36.7 5.5 33 44-76 20-55 (329)
359 1uf9_A TT1252 protein; P-loop, 76.1 2.5 8.5E-05 34.3 4.1 23 44-66 9-31 (203)
360 3ake_A Cytidylate kinase; CMP 76.1 2.4 8.1E-05 34.6 4.0 24 45-68 4-27 (208)
361 2j41_A Guanylate kinase; GMP, 75.9 2 6.9E-05 35.0 3.6 24 44-67 7-30 (207)
362 3cob_A Kinesin heavy chain-lik 75.8 1.3 4.5E-05 40.1 2.4 39 24-63 55-100 (369)
363 1jjv_A Dephospho-COA kinase; P 75.7 2.3 7.9E-05 34.7 3.9 23 45-68 4-26 (206)
364 3uie_A Adenylyl-sulfate kinase 75.7 2 6.8E-05 35.0 3.4 24 44-67 26-49 (200)
365 3iqw_A Tail-anchored protein t 75.6 3.4 0.00012 36.9 5.1 41 37-77 10-53 (334)
366 2gza_A Type IV secretion syste 75.5 2.7 9.3E-05 38.0 4.5 32 44-75 176-209 (361)
367 1cr0_A DNA primase/helicase; R 75.4 2.9 9.9E-05 36.5 4.6 34 44-77 36-73 (296)
368 2v3c_C SRP54, signal recogniti 75.4 1.9 6.4E-05 40.2 3.5 32 44-75 100-134 (432)
369 1svm_A Large T antigen; AAA+ f 75.0 4.4 0.00015 36.9 5.7 31 43-73 169-199 (377)
370 3tr0_A Guanylate kinase, GMP k 75.0 1.9 6.3E-05 35.2 3.1 22 45-66 9-30 (205)
371 1lvg_A Guanylate kinase, GMP k 74.7 2.1 7E-05 35.0 3.2 22 44-65 5-26 (198)
372 2bbw_A Adenylate kinase 4, AK4 74.6 2.3 7.7E-05 36.0 3.6 25 44-68 28-52 (246)
373 3u06_A Protein claret segregat 74.5 1.5 5.2E-05 40.3 2.6 38 24-62 114-158 (412)
374 3io3_A DEHA2D07832P; chaperone 74.5 3.9 0.00013 36.8 5.2 42 36-77 11-57 (348)
375 2if2_A Dephospho-COA kinase; a 74.5 2.5 8.5E-05 34.5 3.7 23 45-68 3-25 (204)
376 3cio_A ETK, tyrosine-protein k 74.4 5.4 0.00018 34.9 6.1 49 27-75 81-140 (299)
377 1rz3_A Hypothetical protein rb 74.2 3.2 0.00011 33.8 4.3 30 45-74 24-56 (201)
378 1z6t_A APAF-1, apoptotic prote 74.2 8.1 0.00028 37.4 7.9 54 22-75 124-186 (591)
379 2yvu_A Probable adenylyl-sulfa 73.9 2.4 8.1E-05 34.0 3.4 31 44-74 14-47 (186)
380 2wwf_A Thymidilate kinase, put 73.6 2.2 7.7E-05 34.9 3.3 24 44-67 11-34 (212)
381 1xjc_A MOBB protein homolog; s 73.6 2.4 8.1E-05 33.7 3.2 31 45-75 6-39 (169)
382 2woj_A ATPase GET3; tail-ancho 73.5 3.8 0.00013 36.9 5.0 33 45-77 20-57 (354)
383 1uj2_A Uridine-cytidine kinase 73.5 2.4 8.2E-05 36.1 3.5 25 44-68 23-47 (252)
384 2ewv_A Twitching motility prot 73.4 2.1 7.1E-05 39.0 3.2 32 44-75 137-172 (372)
385 3f9v_A Minichromosome maintena 73.2 2.1 7.3E-05 41.7 3.4 24 45-68 329-352 (595)
386 1nn5_A Similar to deoxythymidy 73.2 2.5 8.6E-05 34.7 3.5 24 44-67 10-33 (215)
387 2qt1_A Nicotinamide riboside k 73.0 2.9 9.9E-05 34.2 3.8 23 45-67 23-45 (207)
388 1byi_A Dethiobiotin synthase; 72.7 4 0.00014 33.8 4.6 28 49-76 8-38 (224)
389 4gp7_A Metallophosphoesterase; 72.5 1.9 6.3E-05 34.3 2.4 18 45-62 11-28 (171)
390 1ypw_A Transitional endoplasmi 72.3 1.1 3.9E-05 45.4 1.3 28 43-70 511-538 (806)
391 2h92_A Cytidylate kinase; ross 72.3 3.6 0.00012 33.9 4.2 24 45-68 5-28 (219)
392 1j8m_F SRP54, signal recogniti 72.2 3.1 0.00011 36.4 4.0 32 45-76 100-134 (297)
393 3zq6_A Putative arsenical pump 71.7 3.9 0.00013 36.4 4.5 33 45-77 16-51 (324)
394 3tqf_A HPR(Ser) kinase; transf 71.5 2.7 9.3E-05 33.4 3.0 23 44-66 17-39 (181)
395 1ye8_A Protein THEP1, hypothet 71.4 2.9 9.8E-05 33.5 3.3 23 45-67 2-24 (178)
396 1vht_A Dephospho-COA kinase; s 71.3 3.4 0.00011 34.1 3.8 23 45-68 6-28 (218)
397 3bs4_A Uncharacterized protein 71.3 10 0.00035 32.4 6.9 58 33-91 9-71 (260)
398 4e22_A Cytidylate kinase; P-lo 71.1 2.9 0.0001 35.6 3.5 25 44-68 28-52 (252)
399 3asz_A Uridine kinase; cytidin 71.0 3.5 0.00012 33.7 3.9 25 44-68 7-31 (211)
400 3gmt_A Adenylate kinase; ssgci 70.9 3.9 0.00013 34.2 4.1 25 44-68 9-33 (230)
401 3ug7_A Arsenical pump-driving 70.8 8.4 0.00029 34.6 6.6 32 45-76 28-62 (349)
402 2ehv_A Hypothetical protein PH 70.8 4.8 0.00017 33.8 4.8 35 44-78 31-69 (251)
403 1rj9_A FTSY, signal recognitio 70.6 4.8 0.00016 35.4 4.8 32 44-75 103-137 (304)
404 3b9q_A Chloroplast SRP recepto 70.4 4.6 0.00016 35.5 4.6 31 45-75 102-135 (302)
405 3c8u_A Fructokinase; YP_612366 70.3 2.7 9.1E-05 34.5 2.9 23 44-66 23-45 (208)
406 1ihu_A Arsenical pump-driving 69.8 5.4 0.00018 38.8 5.4 33 44-76 9-44 (589)
407 2ga8_A Hypothetical 39.9 kDa p 69.7 4.2 0.00014 36.6 4.2 24 44-67 25-48 (359)
408 1m7g_A Adenylylsulfate kinase; 69.3 5.7 0.00019 32.5 4.8 25 44-68 26-50 (211)
409 3fdi_A Uncharacterized protein 69.3 4.4 0.00015 33.1 4.0 27 45-71 8-34 (201)
410 1q3t_A Cytidylate kinase; nucl 69.2 4.5 0.00015 33.9 4.2 24 45-68 18-41 (236)
411 2ocp_A DGK, deoxyguanosine kin 69.2 4.2 0.00014 34.2 4.0 32 45-76 4-35 (241)
412 2ffh_A Protein (FFH); SRP54, s 69.0 4.8 0.00016 37.3 4.6 31 45-75 100-133 (425)
413 1f2t_A RAD50 ABC-ATPase; DNA d 69.0 3.5 0.00012 31.8 3.2 19 45-63 25-43 (149)
414 2pt7_A CAG-ALFA; ATPase, prote 68.9 3 0.0001 37.2 3.2 33 44-76 172-206 (330)
415 3qxc_A Dethiobiotin synthetase 68.8 5.2 0.00018 33.8 4.4 31 45-75 23-57 (242)
416 1ltq_A Polynucleotide kinase; 68.3 4.5 0.00015 35.3 4.2 23 45-67 4-26 (301)
417 3kta_A Chromosome segregation 68.2 3.7 0.00013 32.7 3.3 23 45-67 28-50 (182)
418 4akg_A Glutathione S-transfera 68.2 11 0.00039 43.4 8.1 57 22-78 623-680 (2695)
419 1odf_A YGR205W, hypothetical 3 67.9 3.3 0.00011 36.1 3.2 23 45-67 33-55 (290)
420 3vr4_A V-type sodium ATPase ca 67.0 8.6 0.00029 36.9 5.9 45 31-75 220-264 (600)
421 1yrb_A ATP(GTP)binding protein 66.9 5.6 0.00019 33.7 4.4 31 45-75 16-48 (262)
422 3e70_C DPA, signal recognition 66.9 6.3 0.00022 35.0 4.8 32 44-75 130-164 (328)
423 1z6g_A Guanylate kinase; struc 66.9 4.3 0.00015 33.6 3.6 30 44-73 24-53 (218)
424 1ls1_A Signal recognition part 66.8 6.1 0.00021 34.5 4.7 31 45-75 100-133 (295)
425 2f6r_A COA synthase, bifunctio 66.7 4.3 0.00015 35.2 3.7 23 45-68 77-99 (281)
426 2og2_A Putative signal recogni 66.5 5.9 0.0002 35.7 4.6 31 45-75 159-192 (359)
427 1sq5_A Pantothenate kinase; P- 66.4 12 0.0004 32.9 6.5 23 44-66 81-103 (308)
428 3of5_A Dethiobiotin synthetase 66.4 5.4 0.00019 33.3 4.1 32 45-76 6-41 (228)
429 1g3q_A MIND ATPase, cell divis 66.4 5.5 0.00019 33.2 4.2 28 49-76 9-39 (237)
430 1hyq_A MIND, cell division inh 66.2 6.3 0.00022 33.5 4.6 29 47-75 7-38 (263)
431 3tqc_A Pantothenate kinase; bi 65.8 6.7 0.00023 34.7 4.7 23 45-67 94-116 (321)
432 3p32_A Probable GTPase RV1496/ 65.6 14 0.00048 33.1 7.0 33 44-76 80-115 (355)
433 2ph1_A Nucleotide-binding prot 65.6 5.6 0.00019 33.9 4.2 27 49-75 25-54 (262)
434 3bfv_A CAPA1, CAPB2, membrane 65.6 5.8 0.0002 34.2 4.2 50 26-75 58-118 (271)
435 2oze_A ORF delta'; para, walke 65.5 8.7 0.0003 33.4 5.5 25 50-74 44-71 (298)
436 2hf9_A Probable hydrogenase ni 65.2 7.5 0.00026 32.0 4.8 38 30-67 25-62 (226)
437 3la6_A Tyrosine-protein kinase 64.7 6.9 0.00024 34.0 4.6 50 26-75 68-128 (286)
438 3q9l_A Septum site-determining 64.6 6.1 0.00021 33.4 4.2 28 48-75 8-38 (260)
439 1gtv_A TMK, thymidylate kinase 64.5 2 7E-05 35.2 1.1 23 46-68 3-25 (214)
440 4eaq_A DTMP kinase, thymidylat 64.1 4.7 0.00016 33.7 3.3 24 45-68 28-51 (229)
441 2ius_A DNA translocase FTSK; n 63.7 4.5 0.00015 38.4 3.3 21 44-64 168-188 (512)
442 3ice_A Transcription terminati 63.7 7 0.00024 35.6 4.4 40 26-65 157-196 (422)
443 3lnc_A Guanylate kinase, GMP k 63.6 2.8 9.7E-05 35.0 1.8 20 45-64 29-48 (231)
444 2f1r_A Molybdopterin-guanine d 63.5 2.4 8.1E-05 33.8 1.2 21 45-65 4-24 (171)
445 1np6_A Molybdopterin-guanine d 63.4 5 0.00017 31.9 3.2 22 45-66 8-29 (174)
446 1dek_A Deoxynucleoside monopho 63.3 11 0.00038 31.7 5.4 43 46-90 4-46 (241)
447 3tmk_A Thymidylate kinase; pho 63.3 7.4 0.00025 32.2 4.3 32 45-76 7-39 (216)
448 4dzz_A Plasmid partitioning pr 63.2 5.8 0.0002 32.1 3.6 27 50-76 9-38 (206)
449 2wsm_A Hydrogenase expression/ 63.1 6.2 0.00021 32.4 3.9 33 43-75 30-64 (221)
450 2iut_A DNA translocase FTSK; n 63.1 4.6 0.00016 38.8 3.3 35 44-78 215-255 (574)
451 3end_A Light-independent proto 63.0 8.3 0.00028 33.7 4.9 32 44-75 42-76 (307)
452 1lkx_A Myosin IE heavy chain; 62.8 6.8 0.00023 38.8 4.5 34 31-64 82-115 (697)
453 1znw_A Guanylate kinase, GMP k 62.3 5.1 0.00017 32.7 3.1 23 45-67 22-44 (207)
454 4anj_A Unconventional myosin-V 62.1 6.7 0.00023 40.8 4.5 35 30-64 131-165 (1052)
455 3zvl_A Bifunctional polynucleo 61.8 4.8 0.00016 37.2 3.1 25 44-68 259-283 (416)
456 2obl_A ESCN; ATPase, hydrolase 61.6 9.3 0.00032 34.2 4.9 38 31-68 59-96 (347)
457 3auy_A DNA double-strand break 60.8 4.6 0.00016 36.7 2.8 20 44-63 26-45 (371)
458 1w9i_A Myosin II heavy chain; 60.7 7.7 0.00026 38.8 4.5 34 31-64 160-193 (770)
459 3ea0_A ATPase, para family; al 60.7 8.7 0.0003 32.1 4.4 28 48-75 10-41 (245)
460 2v26_A Myosin VI; calmodulin-b 60.5 7.6 0.00026 39.0 4.5 34 31-64 128-161 (784)
461 2i3b_A HCR-ntpase, human cance 60.2 6.4 0.00022 31.8 3.3 20 45-64 3-22 (189)
462 3oiy_A Reverse gyrase helicase 60.2 14 0.00047 33.8 6.1 72 267-339 63-146 (414)
463 3qks_A DNA double-strand break 59.5 6.3 0.00021 32.2 3.2 21 44-64 24-44 (203)
464 3kjh_A CO dehydrogenase/acetyl 59.5 6.3 0.00021 33.1 3.3 29 47-75 4-35 (254)
465 3l0o_A Transcription terminati 59.2 14 0.00047 33.7 5.4 40 26-65 158-197 (427)
466 1s96_A Guanylate kinase, GMP k 59.1 6.2 0.00021 32.7 3.1 23 44-66 17-39 (219)
467 1w7j_A Myosin VA; motor protei 58.8 8.5 0.00029 38.7 4.5 34 31-64 144-177 (795)
468 2jeo_A Uridine-cytidine kinase 58.7 6.7 0.00023 33.0 3.3 24 45-68 27-50 (245)
469 4db1_A Myosin-7; S1DC, cardiac 58.6 8.7 0.0003 38.5 4.5 35 30-64 158-192 (783)
470 2yhs_A FTSY, cell division pro 58.6 9.4 0.00032 36.0 4.5 30 45-74 295-327 (503)
471 3cwq_A Para family chromosome 58.5 11 0.00036 30.9 4.4 28 47-75 5-35 (209)
472 4h1g_A Maltose binding protein 58.4 7.3 0.00025 38.9 4.0 27 34-61 455-481 (715)
473 3vkg_A Dynein heavy chain, cyt 58.2 20 0.00069 42.0 7.7 57 22-80 582-641 (3245)
474 3qf7_A RAD50; ABC-ATPase, ATPa 57.6 6.3 0.00021 35.7 3.1 18 45-62 25-42 (365)
475 2afh_E Nitrogenase iron protei 57.3 12 0.00039 32.4 4.7 29 46-74 5-36 (289)
476 4edh_A DTMP kinase, thymidylat 56.5 7.6 0.00026 32.0 3.2 23 45-67 8-30 (213)
477 2r9v_A ATP synthase subunit al 56.5 12 0.0004 35.4 4.7 60 31-90 163-227 (515)
478 1cp2_A CP2, nitrogenase iron p 56.3 12 0.0004 31.9 4.5 28 47-74 5-35 (269)
479 3mfy_A V-type ATP synthase alp 56.3 8.4 0.00029 36.8 3.7 60 31-90 215-277 (588)
480 3gqb_A V-type ATP synthase alp 55.9 8.7 0.0003 36.6 3.8 43 32-74 210-252 (578)
481 1kk8_A Myosin heavy chain, str 55.0 8.9 0.0003 38.8 3.9 34 31-64 157-190 (837)
482 2ck3_D ATP synthase subunit be 54.7 15 0.00052 34.4 5.1 37 31-67 141-177 (482)
483 3hdt_A Putative kinase; struct 54.7 9.9 0.00034 31.6 3.6 26 45-70 16-41 (223)
484 3aez_A Pantothenate kinase; tr 54.7 7.6 0.00026 34.2 3.1 20 45-64 92-111 (312)
485 2xj4_A MIPZ; replication, cell 54.6 9.2 0.00031 33.1 3.6 26 50-75 12-40 (286)
486 1nij_A Hypothetical protein YJ 54.5 11 0.00036 33.4 4.0 33 45-77 6-39 (318)
487 1x6v_B Bifunctional 3'-phospho 53.9 12 0.00041 36.5 4.5 30 45-74 54-86 (630)
488 1knx_A Probable HPR(Ser) kinas 53.5 8.3 0.00028 33.9 3.0 23 44-66 148-170 (312)
489 1a7j_A Phosphoribulokinase; tr 52.8 4.7 0.00016 35.2 1.4 24 45-68 7-30 (290)
490 2ycu_A Non muscle myosin 2C, a 52.8 12 0.0004 38.9 4.4 34 31-64 134-167 (995)
491 1g8x_A Myosin II heavy chain f 52.8 11 0.00039 39.0 4.3 34 31-64 160-193 (1010)
492 1wcv_1 SOJ, segregation protei 52.7 7.3 0.00025 33.0 2.6 26 50-75 14-42 (257)
493 3k9g_A PF-32 protein; ssgcid, 52.7 9.6 0.00033 32.4 3.4 27 49-75 34-62 (267)
494 3qkt_A DNA double-strand break 52.3 9.1 0.00031 34.1 3.3 20 44-63 24-43 (339)
495 1tf7_A KAIC; homohexamer, hexa 52.3 14 0.00047 35.3 4.7 54 34-88 270-328 (525)
496 2qe7_A ATP synthase subunit al 52.0 22 0.00076 33.4 5.8 61 30-90 149-214 (502)
497 3lv8_A DTMP kinase, thymidylat 51.8 9.4 0.00032 32.1 3.0 23 45-67 29-51 (236)
498 2vp4_A Deoxynucleoside kinase; 51.6 9.6 0.00033 31.7 3.1 29 45-74 22-50 (230)
499 1htw_A HI0065; nucleotide-bind 51.6 11 0.00036 29.4 3.1 22 44-65 34-55 (158)
500 2dyk_A GTP-binding protein; GT 51.4 9.9 0.00034 28.9 3.0 21 45-65 3-23 (161)
No 1
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.3e-48 Score=373.77 Aligned_cols=340 Identities=31% Similarity=0.467 Sum_probs=272.5
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCc-
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ- 98 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~- 98 (411)
.+..++|+|||++++..++.+. ++++.+|||+|||++++.++...+.++||++|+++|+.||.++|.+| +. .
T Consensus 88 ~~~~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~~---~~ 160 (472)
T 2fwr_A 88 FDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-GE---EY 160 (472)
T ss_dssp CCCCCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-CG---GG
T ss_pred ccCCCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-CC---cc
Confidence 4556899999999999998765 79999999999999999999888999999999999999999999994 43 5
Q ss_pred EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEe
Q 015196 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (411)
Q Consensus 99 v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lS 178 (411)
++.++++... ..+|+|+|++.+.... ..+ ..++++||+||||++.+..+..+...+...++++||
T Consensus 161 v~~~~g~~~~----~~~Ivv~T~~~l~~~~----------~~~-~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lS 225 (472)
T 2fwr_A 161 VGEFSGRIKE----LKPLTVSTYDSAYVNA----------EKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLT 225 (472)
T ss_dssp EEEBSSSCBC----CCSEEEEEHHHHHHTH----------HHH-TTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEE
T ss_pred eEEECCCcCC----cCCEEEEEcHHHHHHH----------HHh-cCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEe
Confidence 8888887554 4789999999775421 222 356899999999999999999888888888999999
Q ss_pred eecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhch-------------------
Q 015196 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS------------------- 239 (411)
Q Consensus 179 ATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 239 (411)
|||.+.+.....+..++++..+.....++ ..+++.++.+..+.+++..+....|......
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH
Confidence 99999888877888899999988888888 5778888877777777776654433211000
Q ss_pred -------------------hhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCCceeeCCCCHH
Q 015196 240 -------------------KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300 (411)
Q Consensus 240 -------------------~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~i~g~~~~~ 300 (411)
.....+......|...+..++..+ .+.++||||++++.++.+++.|++..+||+++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~ 381 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFLIPAITHRTSRE 381 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHH
Confidence 000011122344556666666553 4789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEE
Q 015196 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380 (411)
Q Consensus 301 ~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~ 380 (411)
+|..+++.|+++ +.+|||+|+++++|+|+|++++||+++++ +|...+.|++||++|.+++| ..+++|.
T Consensus 382 ~R~~~~~~F~~g-~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~k----------~~~~i~~ 449 (472)
T 2fwr_A 382 EREEILEGFRTG-RFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGK----------KEAVLYE 449 (472)
T ss_dssp HHHTHHHHHHHS-SCSBCBCSSCCCSSSCSCCBSEEEEECCS-SCCHHHHHHHHHSBCCCTTT----------CCEEEEE
T ss_pred HHHHHHHHHhCC-CCCEEEEcCchhcCcccccCcEEEEECCC-CCHHHHHHHHhhccCCCCCC----------ceEEEEE
Confidence 999999999997 99999999999999999999999998655 69999999999999999542 4799999
Q ss_pred eecCCchhHHHHHHHHH
Q 015196 381 LVSTDTQEMFYSTKRQQ 397 (411)
Q Consensus 381 ~~~~~~~~~~~~~~r~~ 397 (411)
+++.+|.|+.++++|++
T Consensus 450 lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 450 LISRGTGEVNTARRRKN 466 (472)
T ss_dssp EEECSCC----------
T ss_pred EEeCCCchHHHHHHHHH
Confidence 99999999999988864
No 2
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-42 Score=339.31 Aligned_cols=360 Identities=17% Similarity=0.204 Sum_probs=259.3
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.++|+|+|.+++..++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.++|.++...+...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp EECCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 4599999999999998764 8999999999999998877654 23499999999999999999999986555556
Q ss_pred EEEEcCchhhh--hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-ccccEE
Q 015196 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKL 175 (411)
Q Consensus 99 v~~~~~~~~~~--~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~-~~~~~i 175 (411)
+..+.++.... .....+|+|+|++.+..... ....++++||+||||++....+..++..+ ...+++
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~-----------~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-----------EWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG-----------GGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhchh-----------hhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEE
Confidence 77776654321 22568999999997755310 11256789999999999998888877776 556899
Q ss_pred EEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHH
Q 015196 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (411)
Q Consensus 176 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 255 (411)
+|||||.+.......+..++++..+.....++++.|++.+..+..+............. ................+...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK-GKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHT-TCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc-ccchHHHHHHHhccHHHHHH
Confidence 99999976654444455678888888888888989999999888887777655431110 00000000011111223333
Q ss_pred HHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEee-ccCccccC
Q 015196 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSID 329 (411)
Q Consensus 256 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t-~~~~~Gid 329 (411)
+..++.......+.+++||++ +++++.+.+.| .+..+||+++..+|..+++.|+++ +.+||||| +++++|+|
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccc
Confidence 444443332123555666666 88999999988 356889999999999999999998 99999999 99999999
Q ss_pred ccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc----------------hhHHHHH
Q 015196 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT----------------QEMFYST 393 (411)
Q Consensus 330 ~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~----------------~~~~~~~ 393 (411)
+|++++||++..+ .|...+.|++||+||.|+++ ..+.+|.++.... .......
T Consensus 414 ip~v~~vi~~~~~-~s~~~~~Q~~GR~gR~g~~~----------~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (510)
T 2oca_A 414 VKNLHHVVLAHGV-KSKIIVLQTIGRVLRKHGSK----------TIATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGI 482 (510)
T ss_dssp CCSEEEEEESSCC-CSCCHHHHHHHHHHTTTCCC----------CCCEEEEEEEECCBCCSSSSCSCSCSBCCHHHHHHH
T ss_pred cccCcEEEEeCCC-CCHHHHHHHHhcccccCCCC----------ceEEEEEeecchhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999998655 69999999999999999743 3688888877543 1123345
Q ss_pred HHHHHHhhcCCceeEee
Q 015196 394 KRQQFLIDQGYSFKVHH 410 (411)
Q Consensus 394 ~r~~~~~~~g~~~~~~~ 410 (411)
.|.+.+..+++++.+.+
T Consensus 483 ~r~~~~~~e~~~~~~~~ 499 (510)
T 2oca_A 483 DRIQRYADEKFNYVMKT 499 (510)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhcCceEEEee
Confidence 67778888888887765
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.6e-41 Score=326.36 Aligned_cols=346 Identities=20% Similarity=0.242 Sum_probs=241.1
Q ss_pred CCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 22 PHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
-...|+|||.++++.+... ....++++.++||+|||++++.++..+ .+++||+|| .+|+.||.++|.+|+.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT--
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC--
Confidence 3468999999999876421 011488999999999999998887554 268999999 5689999999999853
Q ss_pred CCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch--hHHHHHHhhcccc
Q 015196 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHC 173 (411)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--~~~~~~~~~~~~~ 173 (411)
...+.++++..........+|+|+||+.+.... .+....+++||+||||++.+. ...+.+..+...+
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~-----------~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~ 179 (500)
T 1z63_A 111 HLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDT-----------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 179 (500)
T ss_dssp TSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCH-----------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEE
T ss_pred CceEEEEecCchhccccCCcEEEeeHHHHhccc-----------hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCc
Confidence 346777776554333345789999999886532 144578999999999999865 3445566667788
Q ss_pred EEEEeeecccCchhh-hhhhhhhcc----------------------------------cchhhchHHHHhcCCccccee
Q 015196 174 KLGLTATLVREDERI-TDLNFLIGP----------------------------------KLYEANWLDLVKGGFIANVQC 218 (411)
Q Consensus 174 ~i~lSATp~~~~~~~-~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 218 (411)
+++|||||..++... ..+..+..+ ........+......+.+...
T Consensus 180 ~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~ 259 (500)
T 1z63_A 180 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIE 259 (500)
T ss_dssp EEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeE
Confidence 999999998765432 111111111 111111101001123455556
Q ss_pred EEEEcCCCHHHHHHHHhhhchhh----------------------hhhh-----------hhcCCCcHHHHHHHHHHhhh
Q 015196 219 AEVWCPMTKEFFSEYLKKENSKK----------------------KQAL-----------YVMNPNKFRACEFLIRFHEQ 265 (411)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-----------~~~~~~k~~~~~~l~~~~~~ 265 (411)
..+.+++++.....|........ +... ......|...+..++....
T Consensus 260 ~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~- 338 (500)
T 1z63_A 260 TNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEAL- 338 (500)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHH-
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHH-
Confidence 66777888766555532110000 0000 0112346666666665543
Q ss_pred cCCCeEEEEecChhHHHHHHHHh------CCceeeCCCCHHHHHHHHHHhcCCCCee-EEEeeccCccccCccCccEEEE
Q 015196 266 QRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIPEANVIIQ 338 (411)
Q Consensus 266 ~~~~~~ivf~~~~~~~~~l~~~l------~~~~i~g~~~~~~r~~~~~~f~~~~~~~-vlv~t~~~~~Gid~~~~~~vi~ 338 (411)
..+.++||||++.+.++.+.+.| .+..+||+++..+|..+++.|++++..+ +|++|+++++|+|+|.++.||+
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 45789999999999988888777 3567999999999999999999974555 7888999999999999999999
Q ss_pred ecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHH
Q 015196 339 ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (411)
Q Consensus 339 ~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 394 (411)
++++ +|+..+.|++||++|.|++ +.+.+|.++..+|.|+.+.+.
T Consensus 419 ~d~~-~~~~~~~Q~~gR~~R~Gq~-----------~~v~v~~lv~~~tiee~i~~~ 462 (500)
T 1z63_A 419 FDRW-WNPAVEDQATDRVYRIGQT-----------RNVIVHKLISVGTLEEKIDQL 462 (500)
T ss_dssp SSCC-SCC---CHHHHTTTTTTTT-----------SCEEEEEEEETTSHHHHTHHH
T ss_pred eCCC-CCcchHHHHHHHHHHcCCC-----------CeeEEEEEEeCCCHHHHHHHH
Confidence 8666 5999999999999999954 458999999999999877654
No 4
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-40 Score=321.52 Aligned_cols=344 Identities=22% Similarity=0.254 Sum_probs=232.6
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.++|+|||.+++..++.+ ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++++.+...
T Consensus 7 ~~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 478999999999998875 78999999999999998887554 6899999999999999999999998776667
Q ss_pred EEEEcCchhhh----hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHHHHHhh----
Q 015196 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT---- 169 (411)
Q Consensus 99 v~~~~~~~~~~----~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~~~~~~---- 169 (411)
+..+++..... .....+|+|+||+.+...... ..+...++++||+||||++.+. .+..+...+
T Consensus 83 v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred eEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 88888754321 123578999999988543211 1123467899999999999854 444333332
Q ss_pred ccccEEEEeeecccCchhhhhhhhhhcccchhh-chHHHHhcCCcccceeEEEEcCCCHHHHHHH---------------
Q 015196 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEA-NWLDLVKGGFIANVQCAEVWCPMTKEFFSEY--------------- 233 (411)
Q Consensus 170 ~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 233 (411)
...++++|||||.++......+...++...... .........++.+..........+......+
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999854333323322222110000 0000000112222222222222222211000
Q ss_pred ------------------------------------------------------------------Hhhh----------
Q 015196 234 ------------------------------------------------------------------LKKE---------- 237 (411)
Q Consensus 234 ------------------------------------------------------------------~~~~---------- 237 (411)
....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (494)
T 1wp9_A 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTK 314 (494)
T ss_dssp HHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccch
Confidence 0000
Q ss_pred -------chhhhh--------hhhhcCCCcHHHHHHHHHHh-hhcCCCeEEEEecChhHHHHHHHHhC-----CceeeC-
Q 015196 238 -------NSKKKQ--------ALYVMNPNKFRACEFLIRFH-EQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYG- 295 (411)
Q Consensus 238 -------~~~~~~--------~~~~~~~~k~~~~~~l~~~~-~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g- 295 (411)
...... ........|...+..++... ....+.++||||++++.++.+.+.|. +..+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 315 ASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 000000 00002334556666666432 11357899999999999999999983 457888
Q ss_pred -------CCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 015196 296 -------ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (411)
Q Consensus 296 -------~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~ 368 (411)
+++..+|..+++.|+++ +.+|||+|+++++|+|+|++++||+++++ +|...++|++||++|.|+
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~-~~~~~~~Qr~GR~~R~g~------- 465 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARG-EFNVLVATSVGEEGLDVPEVDLVVFYEPV-PSAIRSIQRRGRTGRHMP------- 465 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHT-SCSEEEECGGGGGGGGSTTCCEEEESSCC-HHHHHHHHHHTTSCSCCC-------
T ss_pred ccccccccCCHHHHHHHHHHHhcC-CceEEEECCccccCCCchhCCEEEEeCCC-CCHHHHHHHHhhccCCCC-------
Confidence 88999999999999998 89999999999999999999999998655 599999999999999993
Q ss_pred CCCcceeEEEEEeecCCchhHHHHHH
Q 015196 369 GGKEEYNAFFYSLVSTDTQEMFYSTK 394 (411)
Q Consensus 369 ~~~~~~~~~~y~~~~~~~~~~~~~~~ 394 (411)
+.+|.++.+++.|+.+..+
T Consensus 466 -------g~~~~l~~~~t~ee~~~~~ 484 (494)
T 1wp9_A 466 -------GRVIILMAKGTRDEAYYWS 484 (494)
T ss_dssp -------SEEEEEEETTSHHHHHHHH
T ss_pred -------ceEEEEEecCCHHHHHHHH
Confidence 5688899999999887643
No 5
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-39 Score=327.01 Aligned_cols=347 Identities=17% Similarity=0.236 Sum_probs=252.8
Q ss_pred CCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
..+|||||.++++.++.. ....+++|+++||+|||++++.++..+ .+++||||| .+++.||.++|.+|+ +
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 468999999999877521 122589999999999999998887543 568999999 778999999999985 3
Q ss_pred CCcEEEEcCchhhh-----------------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 96 DDQICRFTSDSKER-----------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 96 ~~~v~~~~~~~~~~-----------------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
...+..+.+..... .....+|+|+||+++... ...+....+++||+||||++.
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~----------~~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD----------RAELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT----------HHHHHTSEEEEEEETTGGGGC
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh----------HHHHhcCCcceeehhhhhhhc
Confidence 44666666643311 123568999999988542 244556789999999999996
Q ss_pred ch--hHHHHHHhhccccEEEEeeecccCchhh-hhhhhhhcc-------------------------------cchhhch
Q 015196 159 AH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGP-------------------------------KLYEANW 204 (411)
Q Consensus 159 ~~--~~~~~~~~~~~~~~i~lSATp~~~~~~~-~~~~~~~~~-------------------------------~~~~~~~ 204 (411)
+. ...+.+..+...++++|||||..+.... ..+..++.| .+.....
T Consensus 381 n~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp CSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred CchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 43 5555677778889999999998665432 111112222 1111111
Q ss_pred HHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhch---h------------------hhh--------------------
Q 015196 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS---K------------------KKQ-------------------- 243 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~-------------------- 243 (411)
.++ ...+.+.....+.++++......|...... . .+.
T Consensus 461 ~dv--~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 461 KDV--EKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp GGG--TTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred Hhh--hhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 111 123556666777788887655444321000 0 000
Q ss_pred ----------hhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHH
Q 015196 244 ----------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQA 308 (411)
Q Consensus 244 ----------~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~ 308 (411)
......+.|+..+..++.... ..+.++||||++...++.+...| ....++|.++..+|..+++.
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 001123457777888887665 56889999999999999999998 35678999999999999999
Q ss_pred hcCC--CCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc
Q 015196 309 FKCS--RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 309 f~~~--~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~ 386 (411)
|+++ +...+|++|.++++|+|++.+++||+++++ +|+..+.|++||++|.|++ +.+.+|.+++.+|
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~-----------k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD-WNPQADLQAMARAHRIGQK-----------NHVMVYRLVSKDT 685 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC-SCSHHHHHHHTTTSCSSCC-----------SCEEEEEEEETTS
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecCC-CChhhHHHHHHHHHhcCCC-----------ceEEEEEEecCCC
Confidence 9996 133589999999999999999999999666 5999999999999999954 4699999999999
Q ss_pred hhHHHHHHHHH
Q 015196 387 QEMFYSTKRQQ 397 (411)
Q Consensus 387 ~~~~~~~~r~~ 397 (411)
.|+.+.++..+
T Consensus 686 iEe~i~~~~~~ 696 (800)
T 3mwy_W 686 VEEEVLERARK 696 (800)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998865543
No 6
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-39 Score=323.50 Aligned_cols=323 Identities=19% Similarity=0.261 Sum_probs=210.7
Q ss_pred CCCCCChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHh------------cCCceEEEEcChhhHHHHH-H
Q 015196 22 PHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWA-F 86 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~------------~~~~~lil~P~~~l~~q~~-~ 86 (411)
..+.|||||.++++.++.. ...+++++++|||+|||++++.++.+ ..+++||++|+++|+.||. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 4578999999999998651 11247899999999999998887644 2478999999999999999 7
Q ss_pred HHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc---hhHH
Q 015196 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMFR 163 (411)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~---~~~~ 163 (411)
.|..|.. .+..+.+.. .....+|+|+|++.+....... .....+....+++||+||||++.. ..|.
T Consensus 255 ~~~~~~~----~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 255 TFTPFGD----ARHKIEGGK---VVKSREIYFAIYQSIASDERRP----GLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp CCTTTCS----SEEECCC-----CCSSCSEEEEEGGGC------C----CGGGGSCTTSCSEEEESCCC---------CH
T ss_pred HHHhcch----hhhhhhccC---CCCCCcEEEEEhhhhccccccc----cccccCCCCccCEEEEECCccccccchHHHH
Confidence 7777532 344444432 2346899999999986543211 011233345789999999999986 4788
Q ss_pred HHHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHh--------
Q 015196 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK-------- 235 (411)
Q Consensus 164 ~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 235 (411)
.++..+...++++|||||.+.... ....+++...+.+++.+.++.+++.++.+..+..............
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~--~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNR--DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTH--HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHhCCcceEEEeccccccccch--hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 888888888899999999976654 4556788888899999999999999988877766543221111000
Q ss_pred --hh---chhhhhhhhhcCCCcHHHHHHHHHHhhh-cCCCeEEEEecChhHHHHHHHHhC-------------CceeeCC
Q 015196 236 --KE---NSKKKQALYVMNPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGA 296 (411)
Q Consensus 236 --~~---~~~~~~~~~~~~~~k~~~~~~l~~~~~~-~~~~~~ivf~~~~~~~~~l~~~l~-------------~~~i~g~ 296 (411)
.. .......+. .......++..+.+.... ..+.++||||+++++++.+++.|. +..+||.
T Consensus 402 ~~~~~~~~~~~~~~~~-~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIA-LKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp -------CCSHHHHHH-HHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred cccccCCHHHhhhHhc-ChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 00 000000000 000111223333332221 346799999999999999999883 3356777
Q ss_pred CCHHHHHHHHHHhcCCCCee---EEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 297 TSHVERTKILQAFKCSRDLN---TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 297 ~~~~~r~~~~~~f~~~~~~~---vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++ .+|..++++|+++ +.+ |||||+++++|+|+|++++||++.+ +.|...|+|++||++|.++
T Consensus 481 ~~-~~r~~~l~~F~~~-~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~-~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 481 EG-KIGKGHLSRFQEL-ETSTPVILTTSQLLTTGVDAPTCKNVVLARV-VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TH-HHHHHHHHHHHCT-TCCCCCEEEESSTTTTTCCCTTEEEEEEESC-CCCHHHHHHHHTTSCCCBG
T ss_pred Ch-HHHHHHHHHHhCC-CCCCCEEEEECChhhcCccchheeEEEEEec-CCChHHHHHHHhhhcccCc
Confidence 65 3699999999997 544 8888999999999999999999855 4699999999999999986
No 7
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.8e-38 Score=312.87 Aligned_cols=345 Identities=17% Similarity=0.242 Sum_probs=241.9
Q ss_pred CCCChhHHHHHHHHHhC------CCCcceEEEcCCCCCHHHHHHHHHHhc----------CCceEEEEcChhhHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQ 87 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~------~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~lil~P~~~l~~q~~~~ 87 (411)
..|||||.++++.+... ....++++.++||+|||++++.++..+ .+++|||||. +|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 58999999999988531 223578999999999999998887543 2468999995 899999999
Q ss_pred HHHHhCCCCCcEEEEcCchhhh-------h------cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecC
Q 015196 88 FKLWSTIQDDQICRFTSDSKER-------F------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (411)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~-------~------~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~ 154 (411)
|.+|++.. ..+..+.++.... + ....+|+|+||+.+.... ..+....+++||+|||
T Consensus 133 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~----------~~l~~~~~~~vI~DEa 201 (644)
T 1z3i_X 133 VGKWLGGR-VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA----------EVLHKGKVGLVICDEG 201 (644)
T ss_dssp HHHHHGGG-CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT----------TTTTTSCCCEEEETTG
T ss_pred HHHHcCCC-eeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH----------HHhhcCCccEEEEECc
Confidence 99997542 2333444332211 1 114689999999885432 3344568899999999
Q ss_pred CCCCch--hHHHHHHhhccccEEEEeeecccCchhhh-hhhhhhcccc--------------------------------
Q 015196 155 HVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL-------------------------------- 199 (411)
Q Consensus 155 H~~~~~--~~~~~~~~~~~~~~i~lSATp~~~~~~~~-~~~~~~~~~~-------------------------------- 199 (411)
|++.+. ...+.+..+...++++|||||..++..+. .+..+..|..
T Consensus 202 H~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 281 (644)
T 1z3i_X 202 HRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281 (644)
T ss_dssp GGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHH
T ss_pred eecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHH
Confidence 999765 33345556788899999999988764321 1111111100
Q ss_pred --------------hhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHh---hhchh-----h-------------hhh
Q 015196 200 --------------YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK---KENSK-----K-------------KQA 244 (411)
Q Consensus 200 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~-------------~~~ 244 (411)
.... .+.. ...+.+.....+.+++++.....|.. ..... . ++.
T Consensus 282 ~~~~~L~~~l~~~~lRR~-k~~v-~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 282 QKLQELISIVNRCLIRRT-SDIL-SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHEECCC-GGGG-GGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-HHhH-hhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 0000 0011 12455566667777888765444432 11000 0 000
Q ss_pred ------h---------------------------hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh---
Q 015196 245 ------L---------------------------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--- 288 (411)
Q Consensus 245 ------~---------------------------~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l--- 288 (411)
+ ....+.|+..+..+++......+.++|||+++...++.+...|
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 0 0011335667777776654345789999999999999998887
Q ss_pred --CCceeeCCCCHHHHHHHHHHhcCCCCe---eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCc
Q 015196 289 --RKPMIYGATSHVERTKILQAFKCSRDL---NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363 (411)
Q Consensus 289 --~~~~i~g~~~~~~r~~~~~~f~~~~~~---~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k 363 (411)
....+||+++..+|..+++.|+++ +. .+|++|.++++|+|++.++.||+++++ +|+..+.|++||++|.|++
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~-~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~-wnp~~~~Qa~gR~~R~Gq~- 516 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNP-SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDEQAMARVWRDGQK- 516 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHST-TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC-SSHHHHHHHHTTSSSTTCC-
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCC-CCCcEEEEEecccccCCcccccCCEEEEECCC-CCccHHHHHHHhhhhcCCC-
Confidence 345689999999999999999997 43 488899999999999999999999666 5999999999999999954
Q ss_pred cccccCCCcceeEEEEEeecCCchhHHHHHHH
Q 015196 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 364 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
+.+.+|.+++.+|.|+.+.++.
T Consensus 517 ----------~~v~v~~lv~~~tiEe~i~~~~ 538 (644)
T 1z3i_X 517 ----------KTCYIYRLLSTGTIEEKILQRQ 538 (644)
T ss_dssp ----------SCEEEEEEEETTSHHHHHHHHH
T ss_pred ----------CceEEEEEEECCCHHHHHHHHH
Confidence 4599999999999998887544
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-38 Score=311.23 Aligned_cols=339 Identities=16% Similarity=0.193 Sum_probs=181.9
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.++|+|||.+++..++.+. ++++.+|||+|||++++.++.+. +.++||++|+++|+.||.+++.+++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5789999999999998765 89999999999999988887544 678999999999999999999998754
Q ss_pred CCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch-hHHHHHH
Q 015196 95 QDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (411)
Q Consensus 95 ~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~-~~~~~~~ 167 (411)
....+..++++... ......+|+|+|++.+....... .+ ....+++||+||||++.+. .+..++.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 153 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLMT 153 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSS--------SCCCSTTCSEEEEETGGGCSTTSHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhC--------cccccccCCEEEEECCcccCCcchHHHHHH
Confidence 44567777775432 12235789999999875432110 01 2346789999999999865 2333221
Q ss_pred hh---------ccccEEEEeeecccCchh--hh------hhhhhhccc-chh--hchHHHHhcCCcccceeEEEEcC--C
Q 015196 168 LT---------KSHCKLGLTATLVREDER--IT------DLNFLIGPK-LYE--ANWLDLVKGGFIANVQCAEVWCP--M 225 (411)
Q Consensus 168 ~~---------~~~~~i~lSATp~~~~~~--~~------~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (411)
.+ ...++++|||||...+.. .. .+...++.. ... ....++. .+...+........ .
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 231 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ--RFMNKPEIDVRLVKRRI 231 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH--HHTCCCCEEEEECCCCS
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHH--hcCCCCceEEEEcCCCc
Confidence 11 225799999999754421 11 111112211 100 0111221 12222222122111 1
Q ss_pred CHHH------------------------------------HHHHHhhhch------------------------------
Q 015196 226 TKEF------------------------------------FSEYLKKENS------------------------------ 239 (411)
Q Consensus 226 ~~~~------------------------------------~~~~~~~~~~------------------------------ 239 (411)
.... +..+......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 1100 0001000000
Q ss_pred ---------------------------------hhhh----------------hhhhcCCCcHHHHHHHHH-HhhhcCCC
Q 015196 240 ---------------------------------KKKQ----------------ALYVMNPNKFRACEFLIR-FHEQQRGD 269 (411)
Q Consensus 240 ---------------------------------~~~~----------------~~~~~~~~k~~~~~~l~~-~~~~~~~~ 269 (411)
.... ........|...+..++. ......+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~ 391 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 391 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCc
Confidence 0000 000012335555555553 33224578
Q ss_pred eEEEEecChhHHHHHHHHhCC-----------------ceeeCCCCHHHHHHHHHHhcC-CCCeeEEEeeccCccccCcc
Q 015196 270 KIIVFADNLFALTEYAMKLRK-----------------PMIYGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSIDIP 331 (411)
Q Consensus 270 ~~ivf~~~~~~~~~l~~~l~~-----------------~~i~g~~~~~~r~~~~~~f~~-~~~~~vlv~t~~~~~Gid~~ 331 (411)
++||||++++.++.+.+.|.. ..+||+++..+|..+++.|++ | +++|||||+++++|+|+|
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEEEC---------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC-ceEEEEEcCchhcCCCch
Confidence 999999999999999999832 234677999999999999999 7 999999999999999999
Q ss_pred CccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHH
Q 015196 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (411)
Q Consensus 332 ~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 391 (411)
++++||+++.| +|...|+|++|| ||.. .+.+|.++.+++.++.+
T Consensus 471 ~v~~VI~~d~p-~s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 471 QCNLVVLYEYS-GNVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENE 514 (556)
T ss_dssp --CEEEEETCC-SCHHHHHHC-----------------------CCEEEEESCHHHHHHH
T ss_pred hCCEEEEeCCC-CCHHHHHHhcCC-CCCC--------------CceEEEEEeCcchHHHH
Confidence 99999999666 599999999999 8885 35577788888877553
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-37 Score=296.68 Aligned_cols=290 Identities=17% Similarity=0.151 Sum_probs=202.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c----------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~----------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|+|+|++++..++.+. ++++.||||+|||++++.++.. + +.++||++|+++|+.||.+++.++..
T Consensus 78 ~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 59999999999998765 8999999999999987776532 1 34899999999999999999999865
Q ss_pred CCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HH
Q 015196 94 IQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RK 164 (411)
Q Consensus 94 ~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~ 164 (411)
.....+..+.++.. .......+|+|+|++.|.....+. .+...+++++|+||||++.+..+ ..
T Consensus 155 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf~~~~~~ 226 (434)
T 2db3_A 155 ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------FITFEDTRFVVLDEADRMLDMGFSEDMRR 226 (434)
T ss_dssp TSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--------SCCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred cCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--------CcccccCCeEEEccHhhhhccCcHHHHHH
Confidence 44455666665432 223456899999999775432110 11235678999999999886543 34
Q ss_pred HHHhh---ccccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchh
Q 015196 165 VISLT---KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (411)
Q Consensus 165 ~~~~~---~~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (411)
++..+ ...+++++|||+...... ....++.. ....... ..+...........+
T Consensus 227 i~~~~~~~~~~q~l~~SAT~~~~~~~--~~~~~l~~~~~i~~~~----~~~~~~~i~~~~~~~----------------- 283 (434)
T 2db3_A 227 IMTHVTMRPEHQTLMFSATFPEEIQR--MAGEFLKNYVFVAIGI----VGGACSDVKQTIYEV----------------- 283 (434)
T ss_dssp HHHCTTSCSSCEEEEEESCCCHHHHH--HHHTTCSSCEEEEESS----TTCCCTTEEEEEEEC-----------------
T ss_pred HHHhcCCCCCceEEEEeccCCHHHHH--HHHHhccCCEEEEecc----ccccccccceEEEEe-----------------
Confidence 44432 345799999998642211 11111110 0000000 000001111111111
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCe
Q 015196 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDL 315 (411)
Q Consensus 241 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~ 315 (411)
....|...+..++... +.++||||++++.++.+++.| .+..+||+++..+|..+++.|++| +.
T Consensus 284 -------~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~ 351 (434)
T 2db3_A 284 -------NKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SM 351 (434)
T ss_dssp -------CGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SC
T ss_pred -------CcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CC
Confidence 1112233344444332 335999999999999999998 356899999999999999999998 99
Q ss_pred eEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 316 ~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|||||+++++|+|+|++++||.++.| .+...|+||+||+||.|.
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p-~~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMP-SKIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCC-SSHHHHHHHHTTSSCTTC
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCC-CCHHHHHHHhcccccCCC
Confidence 999999999999999999999998655 599999999999999985
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.4e-38 Score=296.96 Aligned_cols=291 Identities=18% Similarity=0.162 Sum_probs=207.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++.......
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS 119 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 59999999999999875 89999999999999987776432 3489999999999999999999987554456
Q ss_pred EEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh----
Q 015196 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---- 169 (411)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~---- 169 (411)
+....++... ......+|+|+|++.+.....+ ......++++||+||||++.+..+...+..+
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--------KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 6666664321 2235679999999977432111 0111346789999999999887666555443
Q ss_pred -ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhc
Q 015196 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (411)
Q Consensus 170 -~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (411)
...++++||||+...... .+...+.... ... ....-............ .
T Consensus 192 ~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~------------------------~ 241 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLTVKE--FMVKHLHKPY-EIN---LMEELTLKGITQYYAFV------------------------E 241 (400)
T ss_dssp CSSCEEEEEESCCCHHHHH--HHHHHCSSCE-EES---CCSSCBCTTEEEEEEEC------------------------C
T ss_pred CcCceEEEEEecCCHHHHH--HHHHHcCCCe-EEE---eccccccCCceeEEEEe------------------------c
Confidence 245789999998632211 1111111100 000 00000000011000000 0
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~ 323 (411)
...|...+..+++.. .+.++||||++++.++.+++.| .+..+||+++..+|..+++.|+++ +.+|||+|++
T Consensus 242 ~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~ 317 (400)
T 1s2m_A 242 ERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSDL 317 (400)
T ss_dssp GGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESSC
T ss_pred hhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCc
Confidence 122334455555544 3679999999999999999998 356789999999999999999998 9999999999
Q ss_pred CccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 324 ~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++|+|+|++++||.++.| .|...|+|++||++|.|+
T Consensus 318 ~~~Gidip~~~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~ 354 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFP-KTAETYLHRIGRSGRFGH 354 (400)
T ss_dssp SSSSCCCTTEEEEEESSCC-SSHHHHHHHHCBSSCTTC
T ss_pred cccCCCccCCCEEEEeCCC-CCHHHHHHhcchhcCCCC
Confidence 9999999999999998555 699999999999999985
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=306.84 Aligned_cols=338 Identities=17% Similarity=0.197 Sum_probs=205.7
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.++|+|||.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.+++..
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4789999999999998765 89999999999999988887543 678999999999999999999998754
Q ss_pred CCCcEEEEcCchhhh-----hcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch-hHHHHHH
Q 015196 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (411)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~-~~~~~~~ 167 (411)
....+..+.++.... .....+|+|+|++.+....... .+ ....+++||+||||++.+. .+..++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG--------AIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS--------SSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC--------cccccccCCEEEEECccccCCcchHHHHHH
Confidence 455678887765321 1234799999999875432110 01 1245789999999999866 3443332
Q ss_pred hh----------ccccEEEEeeecccCchhh--------hhhhhhhcc-cchh--hchHHHHhcCCcccceeEEEEcC--
Q 015196 168 LT----------KSHCKLGLTATLVREDERI--------TDLNFLIGP-KLYE--ANWLDLVKGGFIANVQCAEVWCP-- 224 (411)
Q Consensus 168 ~~----------~~~~~i~lSATp~~~~~~~--------~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-- 224 (411)
.+ ...++++|||||...+... ..+...++. .... ....++. .+...+........
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE--QVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH--TTCCCCCEEEEECCCC
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH--hhcCCCceEEEEecCc
Confidence 22 2247999999997654221 111122221 1111 1112222 23333322222222
Q ss_pred CCHHHHH-------------------------------------HHHhhhch----------------------------
Q 015196 225 MTKEFFS-------------------------------------EYLKKENS---------------------------- 239 (411)
Q Consensus 225 ~~~~~~~-------------------------------------~~~~~~~~---------------------------- 239 (411)
....... .+......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 1111100 01000000
Q ss_pred ----------------------h-------------hh----------------hhhhhcCCCcHHHHHHHHH-HhhhcC
Q 015196 240 ----------------------K-------------KK----------------QALYVMNPNKFRACEFLIR-FHEQQR 267 (411)
Q Consensus 240 ----------------------~-------------~~----------------~~~~~~~~~k~~~~~~l~~-~~~~~~ 267 (411)
. .+ .........|...+..++. ......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0 00 0000012345555555553 322244
Q ss_pred CCeEEEEecChhHHHHHHHHhC-----------------CceeeCCCCHHHHHHHHHHhcC-CCCeeEEEeeccCccccC
Q 015196 268 GDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSID 329 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l~-----------------~~~i~g~~~~~~r~~~~~~f~~-~~~~~vlv~t~~~~~Gid 329 (411)
+.++||||+++++++.+...|. ...+||+++..+|..+++.|++ | +++|||||+++++|+|
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG-DNNILIATSVADEGID 467 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEECCCTTCCEE
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC-CeeEEEEcchhhcCCc
Confidence 6899999999999999999882 1234668999999999999999 7 9999999999999999
Q ss_pred ccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHH
Q 015196 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (411)
Q Consensus 330 ~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~ 390 (411)
+|++++||+++.| +|...|+|++|| ||.. .+.+|.++.+++.++.
T Consensus 468 lp~v~~VI~~d~p-~s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 468 IAECNLVILYEYV-GNVIKMIQTRGR-GRAR--------------DSKCFLLTSSADVIEK 512 (555)
T ss_dssp TTSCSEEEEESCC-SSCCCEECSSCC-CTTT--------------SCEEEEEESCHHHHHH
T ss_pred cccCCEEEEeCCC-CCHHHHHHhcCc-CcCC--------------CceEEEEEcCCCHHHH
Confidence 9999999999666 599999999999 7774 3567778888877644
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.1e-38 Score=290.67 Aligned_cols=287 Identities=16% Similarity=0.153 Sum_probs=204.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++...+.++||++|+++|+.||.+++.++.......+..+.+
T Consensus 16 ~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 69999999999998765 899999999999999999888888999999999999999999999986555556777766
Q ss_pred chhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH----HHHHhhcc-ccEE
Q 015196 105 DSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISLTKS-HCKL 175 (411)
Q Consensus 105 ~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~----~~~~~~~~-~~~i 175 (411)
+... ......+|+|+|++.+...... ..+....+++||+||||++....+. .++..... ..++
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRLLDLWSK--------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG 164 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHHHHHHHT--------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEE
T ss_pred CcchHHHHhhcCCCCEEEECHHHHHHHHHc--------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEE
Confidence 4321 1123589999999987542111 0112256789999999998755332 23333333 3567
Q ss_pred EEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHH
Q 015196 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (411)
Q Consensus 176 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 255 (411)
++||||...... .+..++..... .. ......+......... ......
T Consensus 165 ~~SAT~~~~~~~--~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~-------------------------~~~~~~ 211 (337)
T 2z0m_A 165 LFSATIPEEIRK--VVKDFITNYEE-IE-----ACIGLANVEHKFVHVK-------------------------DDWRSK 211 (337)
T ss_dssp EEESCCCHHHHH--HHHHHSCSCEE-EE-----CSGGGGGEEEEEEECS-------------------------SSSHHH
T ss_pred EEeCcCCHHHHH--HHHHhcCCcee-ee-----cccccCCceEEEEEeC-------------------------hHHHHH
Confidence 889999743221 11112211100 00 0000011111111111 000111
Q ss_pred HHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCcc
Q 015196 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334 (411)
Q Consensus 256 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~ 334 (411)
+ ..+. ...+.++||||+++++++.+++.|. +..+||+++..+|..+++.|+++ +.+|||+|+++++|+|+|+++
T Consensus 212 ~-~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~~~ 286 (337)
T 2z0m_A 212 V-QALR---ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREG-EYDMLITTDVASRGLDIPLVE 286 (337)
T ss_dssp H-HHHH---TCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECHHHHTTCCCCCBS
T ss_pred H-HHHH---hCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcC-CCcEEEEcCccccCCCccCCC
Confidence 1 1121 1347789999999999999999994 66789999999999999999998 999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 335 VIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 335 ~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+||.+..| .|...|+|++||++|.|+
T Consensus 287 ~Vi~~~~~-~s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 287 KVINFDAP-QDLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp EEEESSCC-SSHHHHHHHHTTBCGGGC
T ss_pred EEEEecCC-CCHHHhhHhcCccccCCC
Confidence 99998655 599999999999999984
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.5e-38 Score=297.44 Aligned_cols=292 Identities=17% Similarity=0.163 Sum_probs=205.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 135 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 135 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeE
Confidence 49999999999998865 89999999999999988776532 4689999999999999999999986555556
Q ss_pred EEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHH----hh
Q 015196 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS----LT 169 (411)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~----~~ 169 (411)
+....++.. .......+|+|+|++.+.....+ ..+....+++||+||||++.+..+...+. .+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 136 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--------CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 666655432 12234578999999877533211 11223567899999999988765443333 22
Q ss_pred -ccccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 170 -KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 170 -~~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
...+++++|||+...... ....++. +.......... ............+.
T Consensus 208 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------------- 259 (410)
T 2j0s_A 208 PPATQVVLISATLPHEILE--MTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVER---------------------- 259 (410)
T ss_dssp CTTCEEEEEESCCCHHHHT--TGGGTCSSCEEECCCGGGC----SCTTEEEEEEEESS----------------------
T ss_pred ccCceEEEEEcCCCHHHHH--HHHHHcCCCEEEEecCccc----cCCCceEEEEEeCc----------------------
Confidence 345899999999642111 1111111 11000000000 00011111111110
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
...+...+..++.... ..++||||++++.++.+++.| .+..+||+++..+|..+++.|++| +.+|||+|+
T Consensus 260 -~~~k~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 334 (410)
T 2j0s_A 260 -EEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTD 334 (410)
T ss_dssp -TTHHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECG
T ss_pred -HHhHHHHHHHHHHhcC---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEECC
Confidence 0113344555554443 669999999999999999998 467899999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||.++.| .|...|+|++||++|.|+
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLP-NNRELYIHRIGRSGRYGR 372 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCC-SSHHHHHHHHTTSSGGGC
T ss_pred hhhCcCCcccCCEEEEECCC-CCHHHHHHhcccccCCCC
Confidence 99999999999999998655 699999999999999985
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-37 Score=292.95 Aligned_cols=292 Identities=15% Similarity=0.115 Sum_probs=205.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC-CC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~ 97 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.... ..
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 49999999999998765 89999999999999987776543 3589999999999999999999986543 45
Q ss_pred cEEEEcCchhh-----hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHH----HHH
Q 015196 98 QICRFTSDSKE-----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR----KVI 166 (411)
Q Consensus 98 ~v~~~~~~~~~-----~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~----~~~ 166 (411)
.+..+.++... .+ .+..+|+|+|++.+...... ..+....+++||+||||++... .+. .++
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 67777764321 11 23468999999987543211 0112357789999999999863 332 233
Q ss_pred Hhhc-cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 167 SLTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 167 ~~~~-~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
.... ..+++++||||...... .+..++. +......... .-............
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------- 232 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRP--VCRKFMQDPMEIFVDDET---KLTLHGLQQYYVKL--------------------- 232 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHH--HHHHHCSSCEEEECCCCC---CCCCTTCEEEEEEC---------------------
T ss_pred hhCCCCceEEEEEeeCCHHHHH--HHHHHcCCCeEEEecCcc---ccCcccceEEEEEc---------------------
Confidence 3322 45789999999754322 1111111 1100000000 00000011111110
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
....+...+..+++.. .+.++||||+++++++.+++.| .+..+||+++..+|..+++.|+++ +.+|||
T Consensus 233 ---~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 305 (391)
T 1xti_A 233 ---KDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV 305 (391)
T ss_dssp ---CGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred ---CchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEE
Confidence 1112334444555444 3789999999999999999998 356789999999999999999998 999999
Q ss_pred eeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+++++|+|+|++++||.+..| .|...|+|++||++|.|+
T Consensus 306 ~T~~~~~Gidi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 306 ATNLFGRGMDIERVNIAFNYDMP-EDSDTYLHRVARAGRFGT 346 (391)
T ss_dssp ESCCCSSCBCCTTEEEEEESSCC-SSHHHHHHHHCBCSSSCC
T ss_pred ECChhhcCCCcccCCEEEEeCCC-CCHHHHHHhcccccCCCC
Confidence 99999999999999999998555 599999999999999985
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-37 Score=288.18 Aligned_cols=289 Identities=19% Similarity=0.184 Sum_probs=205.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
..|+|+|++++..++.+. .++++.+|||+|||++++.++... +.+++|++|+++|+.||.+++.++++.....
T Consensus 27 ~~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp CSCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 379999999999998864 488999999999999988776543 4689999999999999999999998765566
Q ss_pred EEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHHhh-
Q 015196 99 ICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT- 169 (411)
Q Consensus 99 v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~~~- 169 (411)
+....++... ......+|+|+|++.+...... ..+...++++||+||||++.+..+.. ++..+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp EEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred EEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 6666654321 1123589999999977543211 01123567899999999987664433 33332
Q ss_pred ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcC
Q 015196 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (411)
Q Consensus 170 ~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (411)
...+++++||||.+.... ....+++...+. ......+........ ..
T Consensus 177 ~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------------------------~~ 223 (367)
T 1hv8_A 177 KDKRILLFSATMPREILN--LAKKYMGDYSFI-------KAKINANIEQSYVEV------------------------NE 223 (367)
T ss_dssp SSCEEEEECSSCCHHHHH--HHHHHCCSEEEE-------ECCSSSSSEEEEEEC------------------------CG
T ss_pred CCceEEEEeeccCHHHHH--HHHHHcCCCeEE-------EecCCCCceEEEEEe------------------------Ch
Confidence 345889999999753221 111222211000 000001111111111 01
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~ 324 (411)
..+...+..++ . ..+.++||||++++.++.+++.| ++..+||+++..+|..+++.|+++ +.+|||+|+++
T Consensus 224 ~~~~~~l~~~l---~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~ 298 (367)
T 1hv8_A 224 NERFEALCRLL---K-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVM 298 (367)
T ss_dssp GGHHHHHHHHH---C-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTH
T ss_pred HHHHHHHHHHH---h-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 11222333333 2 34678999999999999999998 466889999999999999999998 99999999999
Q ss_pred ccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++|+|+|++++||.+..| .|...|+|++||++|.|+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~ 334 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLP-QNPESYMHRIGRTGRAGK 334 (367)
T ss_dssp HHHCCCSCCSEEEESSCC-SCHHHHHHHSTTTCCSSS
T ss_pred hcCCCcccCCEEEEecCC-CCHHHhhhcccccccCCC
Confidence 999999999999998555 599999999999999985
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.2e-37 Score=290.79 Aligned_cols=295 Identities=17% Similarity=0.166 Sum_probs=203.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
..|+|+|.+++..++.+ ..+++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++......
T Consensus 26 ~~~~~~Q~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 47999999999999876 12489999999999999988776432 458999999999999999999998755555
Q ss_pred cEEEEcCchhh-hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-hh----HHHHHHhhc-
Q 015196 98 QICRFTSDSKE-RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HM----FRKVISLTK- 170 (411)
Q Consensus 98 ~v~~~~~~~~~-~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~~----~~~~~~~~~- 170 (411)
.+....+.... ......+|+|+|++.+.....+ ..+...++++||+||||++.. .. +..+...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT--------TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc--------CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 56666554322 2234679999999977542211 111234678999999998875 22 233333332
Q ss_pred cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcC
Q 015196 171 SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (411)
Q Consensus 171 ~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (411)
..+++++||||...... ....++. +....... .....+. ...........
T Consensus 177 ~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~--------------------- 227 (395)
T 3pey_A 177 DTQLVLFSATFADAVRQ--YAKKIVPNANTLELQT-----NEVNVDA-IKQLYMDCKNE--------------------- 227 (395)
T ss_dssp TCEEEEEESCCCHHHHH--HHHHHSCSCEEECCCG-----GGCSCTT-EEEEEEECSSH---------------------
T ss_pred CcEEEEEEecCCHHHHH--HHHHhCCCCeEEEccc-----ccccccc-ccEEEEEcCch---------------------
Confidence 35789999999642221 1111111 11000000 0000010 11111111000
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~ 324 (411)
..+...+..++... .+.++||||+++++++.+++.| ++..+||+++..+|..+++.|++| +.+|||+|+++
T Consensus 228 ~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 303 (395)
T 3pey_A 228 ADKFDVLTELYGLM---TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKVLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHHTTT---TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCEEEECGGG
T ss_pred HHHHHHHHHHHHhc---cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCEEEECChh
Confidence 01112333333332 3679999999999999999998 467899999999999999999998 99999999999
Q ss_pred ccccCccCccEEEEecCCCC------CHHHHHHHhhcccccCC
Q 015196 325 DNSIDIPEANVIIQISSHAG------SRRQEAQRLGRILRAKG 361 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~~~~------s~~~~~Q~~GR~~R~~~ 361 (411)
++|+|+|++++||.++.| . |...|+|++||++|.|+
T Consensus 304 ~~Gidip~~~~Vi~~~~p-~~~~~~~s~~~~~Qr~GR~gR~g~ 345 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLP-TLANGQADPATYIHRIGRTGRFGR 345 (395)
T ss_dssp SSSCCCTTEEEEEESSCC-BCTTSSBCHHHHHHHHTTSSCTTC
T ss_pred hcCCCcccCCEEEEcCCC-CCCcCCCCHHHhhHhccccccCCC
Confidence 999999999999998554 4 88999999999999885
No 17
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.8e-36 Score=313.28 Aligned_cols=347 Identities=15% Similarity=0.127 Sum_probs=236.2
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---C--CceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K--KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~--~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
...++|+|||.+++..++... ..++++.++||+|||++|+.++..+ + +++|||||+ +|+.||..+|.++++.
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l- 225 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL- 225 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC-
T ss_pred CCCCCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC-
Confidence 345899999999999988753 3578999999999999998887543 2 489999999 9999999999888754
Q ss_pred CCcEEEEcCchhh-------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh-----HH
Q 015196 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-----FR 163 (411)
Q Consensus 96 ~~~v~~~~~~~~~-------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~-----~~ 163 (411)
.+.++++.... ......+|+|+||+.+...... ...+....+++||+||||++.+.. ..
T Consensus 226 --~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~ 296 (968)
T 3dmq_A 226 --RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREY 296 (968)
T ss_dssp --CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-------THHHHTSCCCEEEECCSSCCCCBTTBCCHHH
T ss_pred --CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-------HHHhhhcCCCEEEehhhHhhcCCCCcchHHH
Confidence 45555543321 1223578999999988654321 133446789999999999998542 12
Q ss_pred HHHHhh--ccccEEEEeeecccCchhh-hhhhhhhcccchhh------------chHH----------------------
Q 015196 164 KVISLT--KSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA------------NWLD---------------------- 206 (411)
Q Consensus 164 ~~~~~~--~~~~~i~lSATp~~~~~~~-~~~~~~~~~~~~~~------------~~~~---------------------- 206 (411)
..+..+ ...++++|||||.++.... ..+..+..+..+.. ...+
T Consensus 297 ~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~ 376 (968)
T 3dmq_A 297 QAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEM 376 (968)
T ss_dssp HHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTT
T ss_pred HHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 244444 4557999999998644321 11111111111000 0000
Q ss_pred ------------------------------HHh------------c---CCcccceeEEEEcCCCHHHHHHHHhhhchh-
Q 015196 207 ------------------------------LVK------------G---GFIANVQCAEVWCPMTKEFFSEYLKKENSK- 240 (411)
Q Consensus 207 ------------------------------~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (411)
+.. . +-..+........+++......|.......
T Consensus 377 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (968)
T 3dmq_A 377 IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGA 456 (968)
T ss_dssp TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTC
T ss_pred hcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhh
Confidence 000 0 000111122333344444433332110000
Q ss_pred -------------hhhh---------hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC------Cce
Q 015196 241 -------------KKQA---------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPM 292 (411)
Q Consensus 241 -------------~~~~---------~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~------~~~ 292 (411)
.... .......|...+..++... .+.++||||++++.++.+...|. +..
T Consensus 457 ~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 457 RKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH---RSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp CSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT---SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC---CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 0000 0111233566666666553 48899999999999999998884 457
Q ss_pred eeCCCCHHHHHHHHHHhcCCCC--eeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCC
Q 015196 293 IYGATSHVERTKILQAFKCSRD--LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (411)
Q Consensus 293 i~g~~~~~~r~~~~~~f~~~~~--~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~ 370 (411)
+||+++..+|..+++.|+++ + ++|||||+++++|+|+|++++||+++.| .|...|.|++||++|.|+
T Consensus 534 lhG~~~~~~R~~~l~~F~~g-~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p-~~~~~~~Q~~GR~~R~Gq--------- 602 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEE-DTGAQVLLCSEIGSEGRNFQFASHMVMFDLP-FNPDLLEQRIGRLDRIGQ--------- 602 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHST-TSSCEEEECSCCTTCSSCCTTCCEEECSSCC-SSHHHHHHHHHTTSCSSS---------
T ss_pred EeCCCCHHHHHHHHHHHhCC-CCcccEEEecchhhcCCCcccCcEEEEecCC-CCHHHHHHHhhccccCCC---------
Confidence 89999999999999999998 6 9999999999999999999999998666 599999999999999995
Q ss_pred CcceeEEEEEeecCCchhHHHHHHH
Q 015196 371 KEEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 371 ~~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
...+.+|.++..++.++.+.+.-
T Consensus 603 --~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 603 --AHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp --CSCCEEEEEEETTSHHHHHHHHH
T ss_pred --CceEEEEEecCCChHHHHHHHHH
Confidence 33588999999999998776544
No 18
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-36 Score=309.79 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=189.2
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.++|+|||.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.++|.+++..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 5789999999999998765 89999999999999988887544 679999999999999999999998754
Q ss_pred CCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch-hHHHHHH
Q 015196 95 QDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (411)
Q Consensus 95 ~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~-~~~~~~~ 167 (411)
....+..++++... ......+|+|+|++.+....... .+ ....+++||+||||++... .+..++.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--------cccccccCCEEEEECccccCCCccHHHHHH
Confidence 44577777776532 22346899999999775432110 01 1245689999999999865 3443332
Q ss_pred hh---------ccccEEEEeeecccCchh--------hhhhhhhhccc-chh--hchHHHHhcCCcccceeEEEEcC--C
Q 015196 168 LT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPK-LYE--ANWLDLVKGGFIANVQCAEVWCP--M 225 (411)
Q Consensus 168 ~~---------~~~~~i~lSATp~~~~~~--------~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (411)
.+ ...++++|||||...+.. ...+...++.. ... .....+. .++..+.......+ .
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~--~~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ--RFMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH--HHSCCCCCEEEECCCCS
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH--HhcCCCceEEEecCCCC
Confidence 22 224799999999754321 11111122211 100 0111111 12222222122111 1
Q ss_pred CHH------------------------------------HHHHHHhhhchh-----------------------------
Q 015196 226 TKE------------------------------------FFSEYLKKENSK----------------------------- 240 (411)
Q Consensus 226 ~~~------------------------------------~~~~~~~~~~~~----------------------------- 240 (411)
... .+..++......
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 000011000000
Q ss_pred ------------------hhh--------------------------------hhhhcCCCcHHHHHHHHHH-hhhcCCC
Q 015196 241 ------------------KKQ--------------------------------ALYVMNPNKFRACEFLIRF-HEQQRGD 269 (411)
Q Consensus 241 ------------------~~~--------------------------------~~~~~~~~k~~~~~~l~~~-~~~~~~~ 269 (411)
... ........|...+..++.. .....+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 000 0000123355555555532 2224578
Q ss_pred eEEEEecChhHHHHHHHHhC-----------------CceeeCCCCHHHHHHHHHHhcC-CCCeeEEEeeccCccccCcc
Q 015196 270 KIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSIDIP 331 (411)
Q Consensus 270 ~~ivf~~~~~~~~~l~~~l~-----------------~~~i~g~~~~~~r~~~~~~f~~-~~~~~vlv~t~~~~~Gid~~ 331 (411)
++||||++++.++.+.+.|. ...+||+++..+|..+++.|++ | .++|||||+++++|+|+|
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g-~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCSEEEEECC-------C
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC-CceEEEEcCchhcCCCch
Confidence 99999999999999999982 2345788999999999999999 7 999999999999999999
Q ss_pred CccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHH
Q 015196 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (411)
Q Consensus 332 ~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 391 (411)
++++||++++| +|...|+|++|| ||.. .+.+|.++..++.++.+
T Consensus 712 ~v~~VI~yd~p-~s~~~~iQr~GR-GR~~--------------~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 712 QCNLVVLYEYS-GNVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENE 755 (797)
T ss_dssp CCSEEEEESCC-SCHHHHHTC----------------------CCCEEEEECCHHHHHHH
T ss_pred hCCEEEEeCCC-CCHHHHHHhcCC-CCCC--------------CceEEEEEeCCcHHHHH
Confidence 99999999665 599999999999 8885 24567778888877543
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=293.90 Aligned_cols=293 Identities=13% Similarity=0.083 Sum_probs=192.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh------cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+.+.++......
T Consensus 61 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHhHHHhCCC---CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 379999999999999875 7999999999999998777643 2458999999999999999999998765555
Q ss_pred cEEEEcCchhh-----h-hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHHHH
Q 015196 98 QICRFTSDSKE-----R-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (411)
Q Consensus 98 ~v~~~~~~~~~-----~-~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~~~ 167 (411)
.+....++... . .....+|+|+|++.+..... ...+....+++||+||||++.+..+ ..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN--------RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH--------HTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH--------cCCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 56555553321 1 12567999999997743210 0112234678999999999765533 33333
Q ss_pred hh-ccccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 168 LT-KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 168 ~~-~~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
.+ ...++++|||||...... ....++.. .......... ............
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------------- 261 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLE--VTKKFMRDPIRILVKKEEL----TLEGIRQFYINV---------------------- 261 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHH--HHTTTCSSCEEECCCCCCC----CTTSCCEEEEEC----------------------
T ss_pred hCCCCCeEEEEEEecCHHHHH--HHHHHcCCCEEEEecCCcc----CCCCceEEEEEe----------------------
Confidence 33 345789999999632111 11111111 0000000000 000000000000
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEe
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~ 320 (411)
.....+...+..+++.. .+.++||||++++.++.+++.| ++..+||+++..+|..+++.|+++ ..+|||+
T Consensus 262 -~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~ 336 (414)
T 3eiq_A 262 -EREEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRVLIT 336 (414)
T ss_dssp -SSSTTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----CEEE
T ss_pred -ChHHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 01112334444455443 3678999999999999999998 467899999999999999999998 9999999
Q ss_pred eccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 321 t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+++++|+|+|++++||.++.+ .|...|+|++||++|.|+
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~ 376 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLP-TNRENYIHRIGRGGRFGR 376 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCC-SSTHHHHHHSCCC-----
T ss_pred CCccccCCCccCCCEEEEeCCC-CCHHHhhhhcCcccCCCC
Confidence 9999999999999999998555 599999999999999885
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=291.12 Aligned_cols=293 Identities=16% Similarity=0.156 Sum_probs=202.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-----------------------CCceEEEEcChh
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------------------KKSCLCLATNAV 79 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-----------------------~~~~lil~P~~~ 79 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. + ..++||++|+++
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 489999999999988765 8999999999999987765432 1 146999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecC
Q 015196 80 SVDQWAFQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (411)
Q Consensus 80 l~~q~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~ 154 (411)
|+.||.+++.++.......+..+.++.. ..+....+|+|+|++.+...... ..+....+++||+|||
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--------GKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--------CCcChhhCcEEEEECh
Confidence 9999999999987555556666666432 12345679999999987543211 0112346789999999
Q ss_pred CCCCchhHHHHHHhh------c---cccEEEEeeecccCchhhhhhhhhhcccc-hhhchHHHHhcCCcccceeEEEEcC
Q 015196 155 HVVPAHMFRKVISLT------K---SHCKLGLTATLVREDERITDLNFLIGPKL-YEANWLDLVKGGFIANVQCAEVWCP 224 (411)
Q Consensus 155 H~~~~~~~~~~~~~~------~---~~~~i~lSATp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
|++.+..+...+..+ . ..+++++|||+.+.... ....++.... ....... ............+
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~- 257 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM--LARDFLDEYIFLAVGRVG----STSENITQKVVWV- 257 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHH--HHHHHCSSCEEEEEC--------CCSSEEEEEEEC-
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHH--HHHHHcCCCEEEEeCCCC----CCccCceEEEEEe-
Confidence 998765443333222 1 34689999999642211 1111221110 0000000 0000111111111
Q ss_pred CCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCH
Q 015196 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSH 299 (411)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~ 299 (411)
....+...+..+++.. ..+.++||||++++.++.+++.| .+..+||+++.
T Consensus 258 -----------------------~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 258 -----------------------EESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp -----------------------CGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred -----------------------ccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 1112334444555433 24778999999999999999998 36689999999
Q ss_pred HHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 300 ~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+|..+++.|+++ +.+|||||+++++|+|+|++++||.++.| .|...|+|++||+||.|+
T Consensus 313 ~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~p-~s~~~~~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 313 RDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDLP-SDIEEYVHRIGRTGRVGN 372 (417)
T ss_dssp HHHHHHHHHHHHT-SSCEEEECHHHHTTSCCCCEEEEEESSCC-SSHHHHHHHHTTBCC--C
T ss_pred HHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEEcCC-CCHHHHHHhcCccccCCC
Confidence 9999999999998 99999999999999999999999998655 699999999999999985
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6e-36 Score=293.55 Aligned_cols=294 Identities=16% Similarity=0.154 Sum_probs=208.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.|||+|.+++..++.+. ++++.+|||+|||+++..++....+++||++|+++|+.|+.+.+.++ ++ .+..+.+
T Consensus 44 ~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~-gi---~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GI---SATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH-TC---CEEECCS
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc-CC---cEEEEeC
Confidence 79999999999999875 89999999999999998888877889999999999999999999986 44 4566665
Q ss_pred chhhh-----------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHH---H
Q 015196 105 DSKER-----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---K 164 (411)
Q Consensus 105 ~~~~~-----------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~---~ 164 (411)
..... ..+..+|+++|++++..... ....+...+....+++||+||||.+... .+. .
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~---~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~ 193 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM---FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGI 193 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH---HHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGH
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH---HHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHH
Confidence 43211 23568999999998753210 0111112233457899999999997642 222 2
Q ss_pred HHHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 165 ~~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
+...++..++++|||||..... .++..+++.... .....++..+...+.+....
T Consensus 194 l~~~~~~~~ii~lSAT~~~~v~--~~i~~~l~~~~~-----~~~~~~~~r~nl~~~v~~~~------------------- 247 (591)
T 2v1x_A 194 LKRQFPNASLIGLTATATNHVL--TDAQKILCIEKC-----FTFTASFNRPNLYYEVRQKP------------------- 247 (591)
T ss_dssp HHHHCTTSEEEEEESSCCHHHH--HHHHHHTTCCSC-----EEEECCCCCTTEEEEEEECC-------------------
T ss_pred HHHhCCCCcEEEEecCCCHHHH--HHHHHHhCCCCc-----EEEecCCCCcccEEEEEeCC-------------------
Confidence 3344456789999999974221 122222211000 00011121221111111100
Q ss_pred hhhcCCCcHHHHHHHHHHhh-hcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 245 LYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
..+...+..+++... ...+.++||||++++.++.+++.| .+..+||+++..+|..+++.|.++ +++||
T Consensus 248 -----~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~Vl 321 (591)
T 2v1x_A 248 -----SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN-EIQVV 321 (591)
T ss_dssp -----SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEE
T ss_pred -----CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEE
Confidence 011123333444332 124789999999999999999998 466899999999999999999998 99999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+|+++++|+|+|++++||.+..| .|...|+|++||+||.|.
T Consensus 322 VAT~a~~~GID~p~V~~VI~~~~p-~s~~~y~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 322 VATVAFGMGIDKPDVRFVIHHSMS-KSMENYYQESGRAGRDDM 363 (591)
T ss_dssp EECTTSCTTCCCSCEEEEEESSCC-SSHHHHHHHHTTSCTTSS
T ss_pred EEechhhcCCCcccccEEEEeCCC-CCHHHHHHHhccCCcCCC
Confidence 999999999999999999998555 699999999999999885
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.4e-36 Score=284.33 Aligned_cols=297 Identities=17% Similarity=0.184 Sum_probs=201.2
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-----CCceEEEEcChhhHHHHHHHHHHHhCC-CC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-----~~~~lil~P~~~l~~q~~~~~~~~~~~-~~ 96 (411)
..|+|+|.+++..++.+ ..+++++.+|||+|||++++.++.. + +.++||++|+++|+.|+.+.+.++... +.
T Consensus 46 ~~~~~~Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 37999999999999876 1248999999999999998776542 2 238999999999999999999987653 23
Q ss_pred CcEEEEcCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-h----hHHHHHHhh
Q 015196 97 DQICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLT 169 (411)
Q Consensus 97 ~~v~~~~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~----~~~~~~~~~ 169 (411)
..+....+... .......+|+|+|++.+....... ..+...++++||+||||++.. . ....+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 45555544322 112335689999999775432110 011124678999999998764 2 222233333
Q ss_pred c-cccEEEEeeecccCchhhhhhhhhhc-ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhh
Q 015196 170 K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 170 ~-~~~~i~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
. ..+++++||||...... ....++. +........ .................
T Consensus 198 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------------------- 250 (412)
T 3fht_A 198 PRNCQMLLFSATFEDSVWK--FAQKVVPDPNVIKLKRE----EETLDTIKQYYVLCSSR--------------------- 250 (412)
T ss_dssp CTTCEEEEEESCCCHHHHH--HHHHHSSSCEEECCCGG----GSSCTTEEEEEEECSSH---------------------
T ss_pred CCCceEEEEEeecCHHHHH--HHHHhcCCCeEEeeccc----cccccCceEEEEEcCCh---------------------
Confidence 2 34789999999742221 1111111 111100000 00011111111111100
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
..+...+..++... .+.++||||+++++++.+++.| ++..+||+++..+|..+++.|++| +.+|||+|+
T Consensus 251 --~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 324 (412)
T 3fht_A 251 --DEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 324 (412)
T ss_dssp --HHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEEEECG
T ss_pred --HHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEEEEcC
Confidence 01223344444433 3679999999999999999998 467899999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~-----~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||.++.|. .+...|+|++||+||.|+
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC
Confidence 999999999999999986553 367899999999999885
No 23
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=304.53 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=201.1
Q ss_pred CCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----C----CceEEEEcChhhHHHH-HHHHHHH
Q 015196 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----K----KSCLCLATNAVSVDQW-AFQFKLW 91 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~----~~~lil~P~~~l~~q~-~~~~~~~ 91 (411)
..++|+|||.+++..++.+. ++++.+|||+|||++++.++... . .++||++|+++|+.|| .++|.++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 45799999999999999865 89999999999999988887542 2 7899999999999999 9999998
Q ss_pred hCCCCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHH--
Q 015196 92 STIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR-- 163 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~-- 163 (411)
++. ...+..++++... .+.+..+|+|+|++.|......... .....+....+++||+||||++... .|.
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~--~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLEN--GEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC----------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccc--ccccceecccCcEEEEECccccCccchHHHH
Confidence 754 2467777775432 2235689999999988754321100 0111223357899999999987643 111
Q ss_pred --HHHHh-h-------------ccccEEEEeeecccCchh--------hhhhhhhhcc-cchhh--chHHHHhcCCcccc
Q 015196 164 --KVISL-T-------------KSHCKLGLTATLVREDER--------ITDLNFLIGP-KLYEA--NWLDLVKGGFIANV 216 (411)
Q Consensus 164 --~~~~~-~-------------~~~~~i~lSATp~~~~~~--------~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 216 (411)
..+.. + ...++++|||||...+.. ...+...++. .+... ...++... ...|.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~-~~~p~ 236 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQ-IQEPC 236 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHH-SCCCE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhh-cCCCc
Confidence 11111 1 345799999999975331 1111112222 11110 11122211 11111
Q ss_pred eeEE-EEcCCCH---------------------------HHHHHHHhh--------------------------------
Q 015196 217 QCAE-VWCPMTK---------------------------EFFSEYLKK-------------------------------- 236 (411)
Q Consensus 217 ~~~~-~~~~~~~---------------------------~~~~~~~~~-------------------------------- 236 (411)
.... ....... ..+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (699)
T 4gl2_A 237 KKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDT 316 (699)
T ss_dssp EEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111000 000000000
Q ss_pred ----------------hchhh--------------------------------hhhhh--hcCCCcHHHHHHHH-HHhhh
Q 015196 237 ----------------ENSKK--------------------------------KQALY--VMNPNKFRACEFLI-RFHEQ 265 (411)
Q Consensus 237 ----------------~~~~~--------------------------------~~~~~--~~~~~k~~~~~~l~-~~~~~ 265 (411)
..... ..... .....|...+..++ +....
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~ 396 (699)
T 4gl2_A 317 IRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTR 396 (699)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Confidence 00000 00000 00122333333333 22322
Q ss_pred cC-CCeEEEEecChhHHHHHHHHh-----------CCceeeCC--------CCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 266 QR-GDKIIVFADNLFALTEYAMKL-----------RKPMIYGA--------TSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 266 ~~-~~~~ivf~~~~~~~~~l~~~l-----------~~~~i~g~--------~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
.. +.++||||++++.++.+++.| .+..+||+ ++..+|..+++.|++| +++|||||++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLVaT~~~~ 475 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLIATTVAE 475 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSEEECSCC
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEEEccccc
Confidence 33 689999999999999999986 24578998 9999999999999998 999999999999
Q ss_pred cccCccCccEEEEecCCCCCHHHHHHHhhcccccC
Q 015196 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
+|+|+|++++||.++.| +|...|+|++||++|.|
T Consensus 476 ~GIDip~v~~VI~~d~p-~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 476 EGLDIKECNIVIRYGLV-TNEIAMVQARGRARADE 509 (699)
T ss_dssp TTSCCCSCCCCEEESCC-CCHHHHHHHHTTSCSSS
T ss_pred cCCccccCCEEEEeCCC-CCHHHHHHHcCCCCCCC
Confidence 99999999999998666 59999999999986655
No 24
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-35 Score=306.77 Aligned_cols=342 Identities=16% Similarity=0.191 Sum_probs=188.8
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEEcChhhHHHHHHHHHHH
Q 015196 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 20 ~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
+.+.++|+|||.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.++|.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3346789999999999998765 89999999999999999888654 678999999999999999999998
Q ss_pred hCCCCCcEEEEcCchhhh-----hcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch-hHHH
Q 015196 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRK 164 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~-~~~~ 164 (411)
+......+..++++.... +....+|+|+|++.+.....+. .+ ....+++||+||||++... .+..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--------~~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--------ccccccCCCEEEEECccccCCCccHHH
Confidence 754455677777765321 2235799999999875432110 01 1235789999999999865 3443
Q ss_pred HHHhh---------ccccEEEEeeecccCchh--------hhhhhhhhccc-ch--hhchHHHHhcCCcccceeEEEEcC
Q 015196 165 VISLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPK-LY--EANWLDLVKGGFIANVQCAEVWCP 224 (411)
Q Consensus 165 ~~~~~---------~~~~~i~lSATp~~~~~~--------~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
++..+ ...++++|||||...+.. ...+...++.. .. .....++.. ++..+........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~--~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVK 469 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH--HSCCCCEEEEECC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHH--hccCCcceEEecc
Confidence 33222 124799999999754321 11111112211 00 001112211 2222221111111
Q ss_pred --CCHH------------------------------------HHHHHHhhhch---------------------------
Q 015196 225 --MTKE------------------------------------FFSEYLKKENS--------------------------- 239 (411)
Q Consensus 225 --~~~~------------------------------------~~~~~~~~~~~--------------------------- 239 (411)
.... .+..++.....
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l 549 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 1100 00001100000
Q ss_pred --------------------hhhh----------------h--------------h--hhcCCCcHHHHHHHHHH-hhhc
Q 015196 240 --------------------KKKQ----------------A--------------L--YVMNPNKFRACEFLIRF-HEQQ 266 (411)
Q Consensus 240 --------------------~~~~----------------~--------------~--~~~~~~k~~~~~~l~~~-~~~~ 266 (411)
.... . . ......|...+..++.. ....
T Consensus 550 ~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~ 629 (936)
T 4a2w_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629 (936)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccC
Confidence 0000 0 0 00123355555555543 2224
Q ss_pred CCCeEEEEecChhHHHHHHHHhC-----------------CceeeCCCCHHHHHHHHHHhcC-CCCeeEEEeeccCcccc
Q 015196 267 RGDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSI 328 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l~-----------------~~~i~g~~~~~~r~~~~~~f~~-~~~~~vlv~t~~~~~Gi 328 (411)
.+.++||||++++.++.+.+.|. ...+||+++..+|..+++.|++ | .++|||||+++++|+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g-~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-DNRLLIATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEECC-----
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC-CeeEEEEeCchhcCC
Confidence 57899999999999999999983 1245788999999999999999 7 999999999999999
Q ss_pred CccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHH
Q 015196 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (411)
Q Consensus 329 d~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 391 (411)
|+|++++||+++.| +|...|+|++|| ||..+ +.+|.++..++.++.+
T Consensus 709 Dlp~v~~VI~yD~p-~s~~~~iQr~GR-GR~~~--------------g~vi~Li~~~t~ee~~ 755 (936)
T 4a2w_A 709 DIVQCNLVVLYEYS-GNVTKMIQVRGR-GRAAG--------------SKCILVTSKTEVVENE 755 (936)
T ss_dssp -CCCCSEEEEESCC-SCSHHHHCC--------C--------------CCEEEEESCHHHHHHH
T ss_pred cchhCCEEEEeCCC-CCHHHHHHhcCC-CCCCC--------------CEEEEEEeCCCHHHHH
Confidence 99999999999665 599999999999 88853 4466778888777543
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4e-38 Score=297.71 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh------cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++......
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 389999999999999875 8999999999999997766543 2358999999999999999999998755555
Q ss_pred cEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHHHHhh
Q 015196 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLT 169 (411)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~~~~~ 169 (411)
.+..+.++... ......+|+|+|++.+.....+ ..+...++++||+||||++.+..+ ..+...+
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 67766664321 1112578999999977543211 111235778999999999865433 3333333
Q ss_pred -ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhc
Q 015196 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (411)
Q Consensus 170 -~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (411)
...+++++||||.+.... ....++.. +..+..............+. .....
T Consensus 191 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~---------~~~~~ 242 (394)
T 1fuu_A 191 PPTTQVVLLSATMPNDVLE--VTTKFMRN-----------------PVRILVKKDELTLEGIKQFY---------VNVEE 242 (394)
T ss_dssp CTTCEEEEECSSCCHHHHH--HHHHHCCS-----------------CEEEEECC--------------------------
T ss_pred CCCceEEEEEEecCHHHHH--HHHHhcCC-----------------CeEEEecCccccCCCceEEE---------EEcCc
Confidence 345799999999742111 11111110 11110000000000000000 00000
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~ 323 (411)
...+...+..+++... +.++||||+++++++.+++.|. +..+||+++..+|..+++.|+++ +.+|||+|++
T Consensus 243 ~~~~~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~ 318 (394)
T 1fuu_A 243 EEYKYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHhcCC---CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEEEECCh
Confidence 1113334444444333 6689999999999999999983 56789999999999999999998 9999999999
Q ss_pred CccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 324 ~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+++|+|+|++++||.++.| .|...|+|++||++|.|+
T Consensus 319 ~~~Gldi~~~~~Vi~~~~p-~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 319 LARGIDVQQVSLVINYDLP-ANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------
T ss_pred hhcCCCcccCCEEEEeCCC-CCHHHHHHHcCcccCCCC
Confidence 9999999999999998555 589999999999999984
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.9e-35 Score=287.21 Aligned_cols=282 Identities=17% Similarity=0.182 Sum_probs=206.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~ 104 (411)
.|||+|.+++..++.+. ++++.+|||+|||+++..++....+.+||++|+++|+.|+.+.+..+ ++ .+..+++
T Consensus 25 ~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~-gi---~~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQAN-GV---AAACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHT-TC---CEEEECT
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 78999999999999875 89999999999999998888777889999999999999999999885 33 4556655
Q ss_pred chhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch------hHH---HHH
Q 015196 105 DSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---KVI 166 (411)
Q Consensus 105 ~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~------~~~---~~~ 166 (411)
.... ...+..+|+++|++++... .+...+...++++||+||||.+..- .+. .+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--------~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--------NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--------THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--------HHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 3321 1134589999999988643 2334455578899999999998742 222 233
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhc---ccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (411)
..++..++++||||+...... ++...++ +... ..++-.+...+.+.
T Consensus 170 ~~~~~~~~i~lSAT~~~~~~~--~i~~~l~~~~~~~~--------~~~~~r~~l~~~v~--------------------- 218 (523)
T 1oyw_A 170 QRFPTLPFMALTATADDTTRQ--DIVRLLGLNDPLIQ--------ISSFDRPNIRYMLM--------------------- 218 (523)
T ss_dssp HHCTTSCEEEEESCCCHHHHH--HHHHHHTCCSCEEE--------ECCCCCTTEEEEEE---------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHH--HHHHHhCCCCCeEE--------eCCCCCCceEEEEE---------------------
Confidence 444556899999999753221 1221111 1110 01111111111110
Q ss_pred hhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 244 ~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
....+...+..++.. ..+.++||||++++.++.+++.| .+..+||+++..+|..+++.|.++ +.+||
T Consensus 219 ----~~~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vl 290 (523)
T 1oyw_A 219 ----EKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIV 290 (523)
T ss_dssp ----ECSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEE
T ss_pred ----eCCCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEE
Confidence 011122223333332 34779999999999999999998 356799999999999999999998 99999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|||+++++|+|+|+++.||.+..| .|...|+|++||+||.|.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIP-RNIESYYQETGRAGRDGL 332 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCC-SSHHHHHHHHTTSCTTSS
T ss_pred EEechhhCCCCccCccEEEEECCC-CCHHHHHHHhccccCCCC
Confidence 999999999999999999998655 699999999999999985
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-35 Score=292.24 Aligned_cols=303 Identities=16% Similarity=0.158 Sum_probs=198.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----------CCceEEEEcChhhHHHHHHHHHHHh--
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS-- 92 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~lil~P~~~l~~q~~~~~~~~~-- 92 (411)
.|+|+|.+++..++.+ ..+++++.||||+|||++++.++... ..++||++|+++|+.||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~~-~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SCCHHHHHHHHHHHCS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 5999999999999843 11489999999999999977765321 2389999999999999999999875
Q ss_pred --CCCCCcEEEEcCchh-h----hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHH-
Q 015196 93 --TIQDDQICRFTSDSK-E----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR- 163 (411)
Q Consensus 93 --~~~~~~v~~~~~~~~-~----~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~- 163 (411)
+.....+..+.++.. . .+ ....+|+|+|++.+.... ... .......+++||+||||++....+.
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l------~~~-~~~~~~~~~~lViDEah~l~~~gf~~ 194 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL------EKY-SNKFFRFVDYKVLDEADRLLEIGFRD 194 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHH------HHH-HHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHH------Hhc-cccccccCCEEEEEChHHhhcCCCHH
Confidence 333344555544322 1 11 235799999999885432 111 1222367889999999998865333
Q ss_pred ---HHHHhhc--------cccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHH
Q 015196 164 ---KVISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (411)
Q Consensus 164 ---~~~~~~~--------~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
.+...+. ..++++||||+...... ....++.. ..........................+.....
T Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 270 (579)
T 3sqw_A 195 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS-- 270 (579)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH--
T ss_pred HHHHHHHHhhhhhcccccCceEEEEeccCChHHHH--HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhh--
Confidence 3333321 34799999999742211 11111111 00000000000000000011111111110000
Q ss_pred HHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhh-hcCCCeEEEEecChhHHHHHHHHhC--------CceeeCCCCHHHH
Q 015196 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVER 302 (411)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~--------~~~i~g~~~~~~r 302 (411)
+...+..+.+... ...+.++||||++++.++.++..|. +..+||+++..+|
T Consensus 271 --------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 271 --------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp --------------------HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 1122233332221 1347799999999999999988872 4468999999999
Q ss_pred HHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 303 ~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
..+++.|+++ +.+|||||+++++|+|+|++++||.+..| .+...|+|++||++|.|.
T Consensus 331 ~~~~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~ 387 (579)
T 3sqw_A 331 TSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGK 387 (579)
T ss_dssp HHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCC-SSTTHHHHHHTTSSCTTC
T ss_pred HHHHHHhhcC-CCeEEEEcchhhcCCCcccCCEEEEcCCC-CCHHHhhhhccccccCCC
Confidence 9999999998 99999999999999999999999998655 699999999999999985
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2e-35 Score=291.82 Aligned_cols=303 Identities=16% Similarity=0.143 Sum_probs=198.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----------CCceEEEEcChhhHHHHHHHHHHHhC-
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST- 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~lil~P~~~l~~q~~~~~~~~~~- 93 (411)
.|+|+|.+++..++.+ ..+++++.||||+|||++++.++... ..++||++|+++|+.|+.+++.++.+
T Consensus 94 ~~~~~Q~~~i~~~l~~-~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SCCHHHHHHHHHHHSS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 5999999999999843 12489999999999999987765321 13799999999999999999998642
Q ss_pred ---CCCCcEEEEcCchh-h-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH
Q 015196 94 ---IQDDQICRFTSDSK-E-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (411)
Q Consensus 94 ---~~~~~v~~~~~~~~-~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~ 164 (411)
.....+..+.++.. . ......+|+|+|++.+..... .. .......+++||+||||++....+..
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~~f~~ 245 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEIGFRD 245 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHH------hc-cccccccceEEEEeCHHHHhccchHH
Confidence 33334555544322 1 112357999999998854321 11 11223568999999999988654333
Q ss_pred ----HHHhhc--------cccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHH
Q 015196 165 ----VISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (411)
Q Consensus 165 ----~~~~~~--------~~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
+...+. ..++++||||+...... ....++.. ..........................+.....
T Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 321 (563)
T 3i5x_A 246 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS-- 321 (563)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH--
T ss_pred HHHHHHHhhhhccccCccCceEEEEEccCCHHHHH--HHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhh--
Confidence 332221 33699999999742221 11111111 00000000000000000111111111110000
Q ss_pred HHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhh-hcCCCeEEEEecChhHHHHHHHHh--------CCceeeCCCCHHHH
Q 015196 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL--------RKPMIYGATSHVER 302 (411)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l--------~~~~i~g~~~~~~r 302 (411)
....+..+..... ...+.++||||++++.++.++..| .+..+||+++..+|
T Consensus 322 --------------------~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 322 --------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp --------------------HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHH
Confidence 0112222332221 134779999999999999999887 24568999999999
Q ss_pred HHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 303 ~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
..+++.|+++ +.+|||||+++++|+|+|++++||.++.| .|...|+|++||+||.|.
T Consensus 382 ~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~ 438 (563)
T 3i5x_A 382 TSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVP-SELANYIHRIGRTARSGK 438 (563)
T ss_dssp HHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCC-SSTTHHHHHHTTSSCTTC
T ss_pred HHHHHHHhcC-CCCEEEEcchhhcCCCcccCCEEEEECCC-CchhhhhhhcCccccCCC
Confidence 9999999998 99999999999999999999999998655 599999999999999984
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.9e-35 Score=278.25 Aligned_cols=280 Identities=19% Similarity=0.164 Sum_probs=197.0
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.++|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.+.++.. ....+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v 94 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKI 94 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCE
T ss_pred CCCCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceE
Confidence 4689999999999998765 8999999999999987776544 457999999999999999999999865 44567
Q ss_pred EEEcCchhh--------hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC------------
Q 015196 100 CRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP------------ 158 (411)
Q Consensus 100 ~~~~~~~~~--------~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~------------ 158 (411)
..+.++... .+ .+..+|+|+|++.+.... ..+....+++||+||||++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l----------~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR----------EKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH----------HHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH----------HHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 777765432 11 234899999999875432 23555689999999999653
Q ss_pred ---chh-HHHHHHhh------------ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEE
Q 015196 159 ---AHM-FRKVISLT------------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (411)
Q Consensus 159 ---~~~-~~~~~~~~------------~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
.+. ...++..+ ...+++++|||+............+...... .............
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---------RLVSVARNITHVR 235 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---------CCCCCCCSEEEEE
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---------ccccccccchhee
Confidence 222 44455544 4458999999955433221111111110000 0000011111111
Q ss_pred cCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----Cc-eeeCC
Q 015196 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYGA 296 (411)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~-~i~g~ 296 (411)
.. ..+...+..+++.. +.++||||++++.++.+++.|. +. .+||.
T Consensus 236 ~~-------------------------~~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 236 IS-------------------------SRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp ES-------------------------SCCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred ec-------------------------cCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 10 12334444555442 5789999999999999999983 33 55663
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEe----eccCccccCccC-ccEEEEecCCC-CCHHHHHHHhhcccccCC
Q 015196 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA-GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 297 ~~~~~r~~~~~~f~~~~~~~vlv~----t~~~~~Gid~~~-~~~vi~~~~~~-~s~~~~~Q~~GR~~R~~~ 361 (411)
+|. ++.|++| +++|||| |+++++|+|+|+ +++||.++.|. .|...|+|++||+||.|+
T Consensus 287 ----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 287 ----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp ----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred ----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 444 9999998 9999999 999999999999 99999985551 599999999999999985
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.4e-35 Score=305.90 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=223.9
Q ss_pred CCCCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
...++++|+|.+++..++.. +.+.+.++++|||+|||++++.++. ..+++++|++|+++|+.||.++|.++++.
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 35678999999999998763 3345899999999999999876543 34679999999999999999999988765
Q ss_pred CCCcEEEEcCchhh---------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHH
Q 015196 95 QDDQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (411)
Q Consensus 95 ~~~~v~~~~~~~~~---------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~ 165 (411)
.+..+..+++.... ...+..+|+|+|++.+.... ...++++||+||+|++.......+
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~-------------~~~~l~lvIiDEaH~~g~~~~~~l 745 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV-------------KFKDLGLLIVDEEHRFGVRHKERI 745 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC-------------CCSSEEEEEEESGGGSCHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc-------------cccccceEEEechHhcChHHHHHH
Confidence 55667777653211 11245899999998664322 135778999999999877665544
Q ss_pred HHhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 166 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 166 ~~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
.......++++|||||........ +........ +...-.....+.....+..
T Consensus 746 ~~l~~~~~vl~lSATp~p~~l~~~-~~~~~~~~~--------i~~~~~~r~~i~~~~~~~~------------------- 797 (1151)
T 2eyq_A 746 KAMRANVDILTLTATPIPRTLNMA-MSGMRDLSI--------IATPPARRLAVKTFVREYD------------------- 797 (1151)
T ss_dssp HHHHTTSEEEEEESSCCCHHHHHH-HTTTSEEEE--------CCCCCCBCBCEEEEEEECC-------------------
T ss_pred HHhcCCCCEEEEcCCCChhhHHHH-HhcCCCceE--------EecCCCCccccEEEEecCC-------------------
Confidence 444445689999999974322110 000000000 0000000000111111111
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------CCceeeCCCCHHHHHHHHHHhcCCCCeeEE
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vl 318 (411)
+......++... ..+.+++|||+++++++.+++.| ++..+||+++..+|+.+++.|.+| +++||
T Consensus 798 ------~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~VL 868 (1151)
T 2eyq_A 798 ------SMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVL 868 (1151)
T ss_dssp ------HHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEE
T ss_pred ------HHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcEE
Confidence 112233334333 24789999999999999888887 356789999999999999999998 99999
Q ss_pred EeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHH
Q 015196 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (411)
Q Consensus 319 v~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~ 398 (411)
|||+++++|+|+|++++||+......+...+.|++||+||.+. .++.|.++.++......+++|.+.
T Consensus 869 VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~-------------~g~~~ll~~~~~~l~~~~~~rl~~ 935 (1151)
T 2eyq_A 869 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLEA 935 (1151)
T ss_dssp EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB-------------CEEEEEEECCGGGSCHHHHHHHHH
T ss_pred EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC-------------ceEEEEEECCccccCHHHHHHHHH
Confidence 9999999999999999999875533488899999999999884 355666776665556667788777
Q ss_pred Hhhc
Q 015196 399 LIDQ 402 (411)
Q Consensus 399 ~~~~ 402 (411)
+++.
T Consensus 936 i~~~ 939 (1151)
T 2eyq_A 936 IASL 939 (1151)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 7653
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-35 Score=299.84 Aligned_cols=331 Identities=15% Similarity=0.088 Sum_probs=217.5
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
...++|+|+|.+++..+..+. ++++.+|||+|||+++..++.. .+.+++|++|+++|+.|+.++|.++++
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~---- 154 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG---- 154 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----
Confidence 345789999999999998775 8999999999999998776543 367999999999999999999999876
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhc-cc
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~-~~ 172 (411)
.++.++|+... ....+|+|+|++.|.....+ .......+++||+||+|++.+. .+..++..++ ..
T Consensus 155 ~vglltGd~~~--~~~~~IvV~Tpe~L~~~L~~--------~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITI--NPDAGCLVMTTEILRSMLYR--------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEE--CTTCSEEEEEHHHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCcc--CCCCCEEEEcHHHHHHHHHc--------CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 67888886542 34678999999987543211 0011246789999999999765 4555555543 45
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc---------C----CCHHHHHHHHhhhch
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---------P----MTKEFFSEYLKKENS 239 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~ 239 (411)
++++||||+.+......++....+....-. ...+-..+...+.... + .....+......-..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi-----~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIV-----YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEE-----EECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEE-----ecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 899999998764333333332222111000 0000011111111110 0 011111111100000
Q ss_pred -----------hhhh--hhhhcCCC--cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---------------
Q 015196 240 -----------KKKQ--ALYVMNPN--KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (411)
Q Consensus 240 -----------~~~~--~~~~~~~~--k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------------- 289 (411)
..+. ........ ....+..+++........++||||+++..++.++..|.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 0000 00000000 01233444444332345689999999999999887763
Q ss_pred -----------------------------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE--
Q 015196 290 -----------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-- 338 (411)
Q Consensus 290 -----------------------------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~-- 338 (411)
+.++||++++.+|..+++.|++| .++|||||+++++|+|+|.+++||.
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-CCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-CCcEEEEehHhhccCCCCCceEEEeCC
Confidence 45689999999999999999998 9999999999999999999999887
Q ss_pred --ecC----CCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCc
Q 015196 339 --ISS----HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 339 --~~~----~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~ 386 (411)
++. | .|...|+|++||+||.|. +..+.+|.+..+..
T Consensus 459 ~kfd~~~~rp-~s~~~y~Qr~GRAGR~G~-----------d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 459 RKWDGQQFRW-VSGGEYIQMSGRAGRRGL-----------DDRGIVIMMIDEKM 500 (1010)
T ss_dssp EEECSSCEEE-CCHHHHHHHHTTBCCTTT-----------CSSEEEEEEECSCC
T ss_pred cccCCcCCcc-CCHHHHhHhhhhcccCCC-----------CCceEEEEEECCCC
Confidence 543 3 489999999999999994 23466677766553
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=305.70 Aligned_cols=334 Identities=16% Similarity=0.098 Sum_probs=218.7
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
...+.|+|+|++++..+..+. +++++||||+|||+++..++... +++++|++|+++|+.|+.++|.++++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTC---CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 345789999999999987665 89999999999999988876544 67999999999999999999999875
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----HHHHHHhhc-cc
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLTK-SH 172 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~----~~~~~~~~~-~~ 172 (411)
.++.+.++.. .....+|+|+|++.|.....+... . ..++++||+||||++.+.. +..++..++ ..
T Consensus 253 ~VglltGd~~--~~~~~~IlV~Tpe~L~~~L~~~~~------~--l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 DVGLMTGDIT--INPDAGCLVMTTEILRSMLYRGSE------V--MREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp SEEEECSSCB--CCCSCSEEEEEHHHHHHHHHHCSS------H--HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred CccEEeCccc--cCCCCCEEEeChHHHHHHHHcCcc------c--cccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 5788888654 345689999999977653211100 1 1356899999999998764 444454443 35
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEc----------C---CCHHHHHHHHhhhch
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC----------P---MTKEFFSEYLKKENS 239 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~ 239 (411)
++++||||+.+......++....+....-.. ...-..+...+.... . .....+......-..
T Consensus 323 qvl~lSATipn~~e~a~~l~~~~~~~~~vi~-----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVY-----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHTCSCEEEEE-----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe-----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 8999999987654433333332221110000 000001111111100 0 011111111100000
Q ss_pred -----------hh-hhhhhhcCCC---cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC---------------
Q 015196 240 -----------KK-KQALYVMNPN---KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (411)
Q Consensus 240 -----------~~-~~~~~~~~~~---k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------------- 289 (411)
.. .......... ....+..++.......+.++||||+++..++.++..|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 00 0000000000 02344445544443446799999999999999998873
Q ss_pred -----------------------------CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEec
Q 015196 290 -----------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (411)
Q Consensus 290 -----------------------------~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~ 340 (411)
+..+||++++.+|..+++.|.+| .++|||||+++++|+|+|++++||...
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-CCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-CCeEEEECcHHhcCCCCCCceEEEecC
Confidence 46789999999999999999998 999999999999999999999988542
Q ss_pred CC-------CCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchh
Q 015196 341 SH-------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (411)
Q Consensus 341 ~~-------~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~ 388 (411)
.+ +-|...|+|++||+||.|. +..+.+|.+..+....
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G~-----------d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGL-----------DDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSSS-----------CSSEEEEEEECCCCCH
T ss_pred cccCccccccCCHHHHHHhhcccCCCCC-----------CCceEEEEEecCCcCH
Confidence 11 2378899999999999994 3347777777666433
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.2e-35 Score=294.29 Aligned_cols=335 Identities=19% Similarity=0.231 Sum_probs=182.8
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc--------CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
..|||||.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.+++...
T Consensus 12 ~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~ 88 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERH 88 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccC
Confidence 589999999999998765 89999999999999988876432 1689999999999999999999987544
Q ss_pred CCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHH-hcCCccEEEEecCCCCCch-hHHHHHH-
Q 015196 96 DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS- 167 (411)
Q Consensus 96 ~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~lvIiDE~H~~~~~-~~~~~~~- 167 (411)
...+..++++... ......+|+|+|++.|...... ..+ ....+++||+||||++.+. .+..++.
T Consensus 89 ~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--------~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--------GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--------TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--------CcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 4567777775421 1224589999999987543211 011 2346789999999998755 3333221
Q ss_pred ---h-h-----ccccEEEEeeecccCchh-----hhhhhhhhcc---cc---hhhchHHHHhcCCcccceeEEEEcC---
Q 015196 168 ---L-T-----KSHCKLGLTATLVREDER-----ITDLNFLIGP---KL---YEANWLDLVKGGFIANVQCAEVWCP--- 224 (411)
Q Consensus 168 ---~-~-----~~~~~i~lSATp~~~~~~-----~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~--- 224 (411)
. + ...++++|||||...+.. ...+..++.. .. ......++.. +...+.......+
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~--~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQ--VVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHH--HSCCCEEEEEECCCCS
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHh--hcCCCceeEEecCccc
Confidence 1 1 335899999999854321 1111111110 00 0000011110 1100000000000
Q ss_pred ------------------------------------CCHHHHHHHHhh--------------------------------
Q 015196 225 ------------------------------------MTKEFFSEYLKK-------------------------------- 236 (411)
Q Consensus 225 ------------------------------------~~~~~~~~~~~~-------------------------------- 236 (411)
.....+..+...
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred --------hc----------------------hhhhhhhh-----------------hcCCCcHHHHHHHHHHh-hhcCC
Q 015196 237 --------EN----------------------SKKKQALY-----------------VMNPNKFRACEFLIRFH-EQQRG 268 (411)
Q Consensus 237 --------~~----------------------~~~~~~~~-----------------~~~~~k~~~~~~l~~~~-~~~~~ 268 (411)
.. ......+. .....|...+..++... ....+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 00 00000000 01334566666666433 11346
Q ss_pred CeEEEEecChhHHHHHHHHhC---------Ccee--------eCCCCHHHHHHHHHHhcC-CCCeeEEEeeccCccccCc
Q 015196 269 DKIIVFADNLFALTEYAMKLR---------KPMI--------YGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 269 ~~~ivf~~~~~~~~~l~~~l~---------~~~i--------~g~~~~~~r~~~~~~f~~-~~~~~vlv~t~~~~~Gid~ 330 (411)
.++||||++++.++.+++.|. +..+ ||+++..+|..+++.|++ | +.+|||||+++++|+|+
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g-~~~vLVaT~v~~~GiDi 477 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGIDI 477 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC---
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-CccEEEEechhhcCCcC
Confidence 789999999999999999982 2234 568999999999999998 7 99999999999999999
Q ss_pred cCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchh
Q 015196 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (411)
Q Consensus 331 ~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~ 388 (411)
|++++||.++.| .|...|+|++|| ||..+ +.+|.++..++.+
T Consensus 478 p~v~~VI~~d~p-~s~~~~~Qr~GR-GR~~~--------------g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 478 AQCNLVILYEYV-GNVIKMIQTRGR-GRARG--------------SKCFLLTSNAGVI 519 (696)
T ss_dssp CCCSEEEEESCC---CCCC----------CC--------------CEEEEEESCHHHH
T ss_pred ccCCEEEEeCCC-CCHHHHHHhhcc-CcCCC--------------ceEEEEecCCCHH
Confidence 999999999665 589999999999 99752 4456677766553
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-36 Score=293.07 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=180.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+++|++++..++.+ ..+++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++++.....
T Consensus 141 ~p~~~Q~~ai~~i~~~-~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCS-SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcC-CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 5999999999999886 12589999999999999987765432 3489999999999999999999986544333
Q ss_pred EEEEcCc-hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hHHHHHHhhc-c
Q 015196 99 ICRFTSD-SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK-S 171 (411)
Q Consensus 99 v~~~~~~-~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~~~~~~~~~-~ 171 (411)
+....+. .........+|+|+|++.+.....+ ..+....+++||+||||++.+. .+..+...+. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~--------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~ 291 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 291 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTT
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHc--------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcC
Confidence 3322222 2222233679999999977542211 1112356899999999998762 3333444443 4
Q ss_pred ccEEEEeeecccCchhhhhhhhhhccc-chhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCC
Q 015196 172 HCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (411)
.++++|||||...... ....+.+.. .......... ............. ..
T Consensus 292 ~~~i~lSAT~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~-----------------------~~ 342 (508)
T 3fho_A 292 TQIVLFSATFSERVEK--YAERFAPNANEIRLKTEELS----VEGIKQLYMDCQS-----------------------EE 342 (508)
T ss_dssp CEEEEEESCCSTHHHH--HHHHHSTTCEEECCCCCC--------CCCCEEEEC-------------------------CH
T ss_pred CeEEEEeCCCCHHHHH--HHHHhcCCCeEEEeccccCC----cccceEEEEECCc-----------------------hH
Confidence 5789999999642221 111111110 0000000000 0000000000000 01
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
.+...+..++... .+.++||||+++++++.++..| ++..+||+++..+|..+++.|++| +.+|||+|++++
T Consensus 343 ~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VLVaT~~l~ 418 (508)
T 3fho_A 343 HKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVLVTTNVIA 418 (508)
T ss_dssp HHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCCEECC---
T ss_pred HHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEeCChhh
Confidence 1122333333332 3679999999999999999998 467899999999999999999998 999999999999
Q ss_pred cccCccCccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 015196 326 NSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~-----~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+|++++||.++.|. .|...|+|++||+||.|.
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~ 459 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGR 459 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC----
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCC
Confidence 999999999999875542 578999999999999884
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=288.01 Aligned_cols=297 Identities=17% Similarity=0.177 Sum_probs=106.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-C-----CceEEEEcChhhHHHHHHHHHHHhCCC-C
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTIQ-D 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~-----~~~lil~P~~~l~~q~~~~~~~~~~~~-~ 96 (411)
..|+|+|.+++..++.+ ..+++++.+|||+|||++++.++... . .++||++|+++|+.|+.+.+.++.... .
T Consensus 113 ~~p~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 36899999999999875 12589999999999999987776432 1 289999999999999999888876432 2
Q ss_pred CcEEEEcCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-hhHH----HHHHhh
Q 015196 97 DQICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFR----KVISLT 169 (411)
Q Consensus 97 ~~v~~~~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~~~~----~~~~~~ 169 (411)
..+....+... .......+|+|+|++.+.....+. ..+...++++||+||+|++.. ..+. .+...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 34444444322 112234689999999774332110 011225778999999998865 2332 233332
Q ss_pred c-cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcC-CCHHHHHHHHhhhchhhhhhhhh
Q 015196 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-MTKEFFSEYLKKENSKKKQALYV 247 (411)
Q Consensus 170 ~-~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 247 (411)
. ..+++++||||...... .... ++..+....+... ........+. ....
T Consensus 265 ~~~~~~i~~SAT~~~~~~~--~~~~------------------~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~ 315 (479)
T 3fmp_B 265 PRNCQMLLFSATFEDSVWK--FAQK------------------VVPDPNVIKLKREEETLDTIKQYY---------VLCS 315 (479)
T ss_dssp CTTSEEEEEESCCCHHHHH--HHHH------------------HSSSEEEEEEC--------------------------
T ss_pred CccceEEEEeCCCCHHHHH--HHHH------------------HcCCCeEEeccccccCcCCceEEE---------EEeC
Confidence 2 34799999999742211 0001 1111111111100 0000000000 0000
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
....+...+..++... ...++||||++++.++.++..| ++..+||+++..+|..+++.|++| +.+|||||+
T Consensus 316 ~~~~~~~~l~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iLv~T~ 391 (479)
T 3fmp_B 316 SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEcc
Confidence 1112333333444333 3568999999999999999998 467899999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~-----~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||.++.|. .+...|+|++||+||.|.
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp --------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 999999999999999886553 356789999999999885
No 36
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=9.1e-34 Score=290.85 Aligned_cols=326 Identities=14% Similarity=0.139 Sum_probs=217.1
Q ss_pred CCCCChhHHHHHHHHHhC-----------CCCcceEEEcCCCCCHHHHHHHHHHhcC-----CceEEEEcChhhHHHHHH
Q 015196 23 HAQPRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAF 86 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~-----------~~~~~~ll~~~tG~GKT~~a~~~~~~~~-----~~~lil~P~~~l~~q~~~ 86 (411)
.+.|||||.+|+..++.. ...++++++++||||||++++.++..+. .++|||||+++|+.||.+
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 357999999999998652 0124789999999999999876664332 589999999999999999
Q ss_pred HHHHHhCCCCCcEEEEcC-chhhhh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHH
Q 015196 87 QFKLWSTIQDDQICRFTS-DSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR 163 (411)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~ 163 (411)
+|..+.... ..+..+. .....+ ....+|+|+|+++|......... ... ...+++||+||||+.... .+.
T Consensus 349 ~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~----~~~--~~~~~lvIiDEAHrs~~~~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD----LPV--YNQQVVFIFDECHRSQFGEAQK 420 (1038)
T ss_dssp HHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC----CGG--GGSCEEEEEESCCTTHHHHHHH
T ss_pred HHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc----hhc--cccccEEEEEccchhcchHHHH
Confidence 999875321 1110111 111122 24589999999988542110000 001 135689999999998864 466
Q ss_pred HHHHhhccccEEEEeeecccCchh--hhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhc-hh
Q 015196 164 KVISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-SK 240 (411)
Q Consensus 164 ~~~~~~~~~~~i~lSATp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (411)
.+...++..++++|||||.+..+. ......+||+.++.+++.+++++|++.|+.+.... ..+.....-. ... ..
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~--v~~~~~~~~~-e~d~~~ 497 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYND--VRPQFKSLET-ETDEKK 497 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECC--CCGGGHHHHT-CCCHHH
T ss_pred HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEe--ccchhhhccc-cccHHH
Confidence 666777888999999999976542 12455678888899999999999999987643221 1111100000 000 00
Q ss_pred ---hhhhhhhcCCCcH-HHHHHHHHHhhhc--------CCCeEEEEecChhHHHHHHHHhC-----------------Cc
Q 015196 241 ---KKQALYVMNPNKF-RACEFLIRFHEQQ--------RGDKIIVFADNLFALTEYAMKLR-----------------KP 291 (411)
Q Consensus 241 ---~~~~~~~~~~~k~-~~~~~l~~~~~~~--------~~~~~ivf~~~~~~~~~l~~~l~-----------------~~ 291 (411)
........++.++ .++..+++..... .+.+++|||+++++|..+++.|. +.
T Consensus 498 ~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 498 LSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 0000011122222 3445555433211 34689999999999999888772 11
Q ss_pred -eeeCC----------C----------CH-----------------------------HHHHHHHHHhcCCCCeeEEEee
Q 015196 292 -MIYGA----------T----------SH-----------------------------VERTKILQAFKCSRDLNTIFLS 321 (411)
Q Consensus 292 -~i~g~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~~vlv~t 321 (411)
+++|. + +. ..|..++++|+++ +++|||+|
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILIvv 656 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLIVV 656 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEEES
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEEEc
Confidence 23432 1 11 1377889999998 99999999
Q ss_pred ccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCC
Q 015196 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 322 ~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~ 362 (411)
+++.+|+|+|.++++++. .|. +...++|++||++|.+++
T Consensus 657 d~lltGfDiP~l~tlylD-kpl-~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 657 GMFLTGFDAPTLNTLFVD-KNL-RYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp STTSSSCCCTTEEEEEEE-SCC-CHHHHHHHHHTTCCCCCT
T ss_pred chHHhCcCcccccEEEEc-cCC-CccceeehhhccCcCCCC
Confidence 999999999999776664 664 778899999999999974
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-34 Score=290.32 Aligned_cols=291 Identities=16% Similarity=0.152 Sum_probs=196.9
Q ss_pred CCCCCChhHHHHHHHHHhC---CCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCC
Q 015196 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~---~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~ 95 (411)
..+.|+++|++++..+..+ +.+.+.++.+|||+|||++++.++... +.++++++|+++|+.||.+++.+++...
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 3468999999999998753 233588999999999999988876543 6899999999999999999999987654
Q ss_pred CCcEEEEcCchhhh---------hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHH
Q 015196 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (411)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~ 166 (411)
...+..++++.... ..+..+|+|+|++.+.. .+...++++||+||+|++.......+.
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------------~~~~~~l~lVVIDEaHr~g~~qr~~l~ 511 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------------DVHFKNLGLVIIDEQHRFGVKQREALM 511 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------------CCCCSCCCEEEEESCCCC-----CCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------------hhhccCCceEEecccchhhHHHHHHHH
Confidence 56788887754321 12458999999986632 122367899999999998655433222
Q ss_pred HhhccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhh
Q 015196 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (411)
Q Consensus 167 ~~~~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (411)
......++++|||||....... .+++..- .+..+....+ ..+.. ....
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~----~~~g~~~--~s~i~~~p~~-r~~i~--~~~~----------------------- 559 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMAL----AFYGDLD--VTVIDEMPPG-RKEVQ--TMLV----------------------- 559 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHH----HHTCCSS--CEEECCCCSS-CCCCE--ECCC-----------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHHH----HHhCCcc--eeeeeccCCC-CcceE--EEEe-----------------------
Confidence 2223468999999996422111 1111100 0000000000 00110 0000
Q ss_pred hcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhH--------HHHHHHHh--------CCceeeCCCCHHHHHHHHHHhc
Q 015196 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA--------LTEYAMKL--------RKPMIYGATSHVERTKILQAFK 310 (411)
Q Consensus 247 ~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~--------~~~l~~~l--------~~~~i~g~~~~~~r~~~~~~f~ 310 (411)
...........+.+.. ..+.+++|||+.+++ ++.+++.| ++..+||+++..+|+.+++.|+
T Consensus 560 -~~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~ 636 (780)
T 1gm5_A 560 -PMDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA 636 (780)
T ss_dssp -CSSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT
T ss_pred -ccchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0011112233333333 347789999987643 55555554 3567899999999999999999
Q ss_pred CCCCeeEEEeeccCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 311 ~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+| +++|||||+++++|+|+|++++||+++.+..+...+.|++||+||.+.
T Consensus 637 ~G-~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~ 686 (780)
T 1gm5_A 637 EG-RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 686 (780)
T ss_dssp TT-SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred CC-CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCC
Confidence 98 999999999999999999999999986654467889999999999885
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.9e-33 Score=285.98 Aligned_cols=319 Identities=16% Similarity=0.112 Sum_probs=207.0
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
...|+|+|+|.+++..++.+. ++++.+|||+|||++++.++. ..+.+++|++|+++|+.|+.+++.++++ ..
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 345789999999999998875 899999999999998776654 3457899999999999999999998653 34
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhcc-c
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS-H 172 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~~-~ 172 (411)
.++.++++.. .....+|+|+|++.|.....+ .......+++||+||||++.+. .|..++..++. .
T Consensus 110 ~v~~l~G~~~--~~~~~~IlV~Tpe~L~~~l~~--------~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQ--INPDANCLIMTTEILRSMLYR--------GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCE--ECTTSSEEEEEHHHHHHHHHH--------TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCc--cCCCCCEEEECHHHHHHHHHh--------CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 6788887654 345689999999987542210 0111246789999999998653 67777777654 5
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEE--------EEcC---CCHHHHHHHHhhhch--
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE--------VWCP---MTKEFFSEYLKKENS-- 239 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~-- 239 (411)
++++||||+.+......++........+... ..+-..|...+. +... .....+.........
T Consensus 180 ~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~-----~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 180 KFILLSATVPNTYEFANWIGRTKQKNIYVIS-----TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTCCEEEEE-----CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred CEEEEcCCCCChHHHHHHHhcccCCceEEEe-----cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 8899999997544333333211111000000 000011111111 1000 011111110000000
Q ss_pred --------------------------hh----------------------------hhhhhhcCCCcHHHHHHHHHHhhh
Q 015196 240 --------------------------KK----------------------------KQALYVMNPNKFRACEFLIRFHEQ 265 (411)
Q Consensus 240 --------------------------~~----------------------------~~~~~~~~~~k~~~~~~l~~~~~~ 265 (411)
+. ........+. ......+++....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~l~~ 333 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPS-KKTWPEIVNYLRK 333 (997)
T ss_dssp --------------------------------------------------------------CCCC-TTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-hhHHHHHHHHHHh
Confidence 00 0000000011 1223344444433
Q ss_pred cCCCeEEEEecChhHHHHHHHHh--------------------------------------------CCceeeCCCCHHH
Q 015196 266 QRGDKIIVFADNLFALTEYAMKL--------------------------------------------RKPMIYGATSHVE 301 (411)
Q Consensus 266 ~~~~~~ivf~~~~~~~~~l~~~l--------------------------------------------~~~~i~g~~~~~~ 301 (411)
....++||||.+++.++.++..| ++..+||++++.+
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 44678999999999999999888 2467899999999
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCC-------CCCHHHHHHHhhcccccCC
Q 015196 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH-------AGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 302 r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~-------~~s~~~~~Q~~GR~~R~~~ 361 (411)
|..+++.|.+| .++|||||+++++|+|+|+..+|+...+. +-|...|+|++||+||.|.
T Consensus 414 R~~v~~~F~~G-~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 414 KELIEILFSKG-FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp HHHHHHHHHTT-CCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred HHHHHHHHHCC-CCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 99999999998 99999999999999999996665532111 1189999999999999984
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-33 Score=283.75 Aligned_cols=311 Identities=18% Similarity=0.230 Sum_probs=206.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 101 (411)
.|+|+|.+++..+..+. ++++.+|||+|||+++..++.+ .+.++++++|+++|+.|+.+++..+.. ....++.
T Consensus 25 ~l~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~ 100 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGK---NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGI 100 (702)
T ss_dssp CCCCCCHHHHHHHTTCS---CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEE
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 79999999999976654 9999999999999998776542 267999999999999999999965432 2356777
Q ss_pred EcCchhhh--hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhh----cc
Q 015196 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----KS 171 (411)
Q Consensus 102 ~~~~~~~~--~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~----~~ 171 (411)
..|..... ..+..+|+|+|++++.....+.. ....++++||+||+|.+.+. .+..++..+ ..
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--------~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--------SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--------SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--------hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 77754321 23468999999998754321110 00246789999999998753 333333333 35
Q ss_pred ccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCC
Q 015196 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (411)
.++++||||+.+.. .+..+++...+..+. -..+...... ..... .+. ..... . ..
T Consensus 173 ~~ii~lSATl~n~~----~~~~~l~~~~~~~~~-------r~~~l~~~~~-~~~~~----~~~---~~~~~-~-----~~ 227 (702)
T 2p6r_A 173 LRVIGLSATAPNVT----EIAEWLDADYYVSDW-------RPVPLVEGVL-CEGTL----ELF---DGAFS-T-----SR 227 (702)
T ss_dssp CEEEEEECCCTTHH----HHHHHTTCEEEECCC-------CSSCEEEEEE-CSSEE----EEE---ETTEE-E-----EE
T ss_pred ceEEEECCCcCCHH----HHHHHhCCCcccCCC-------CCccceEEEe-eCCee----ecc---Ccchh-h-----hh
Confidence 68999999997522 233344322211110 0111111000 00000 000 00000 0 00
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----------------------------------CCceeeCC
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------------------------------RKPMIYGA 296 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----------------------------------~~~~i~g~ 296 (411)
.......+.+... .+.++||||++++.++.++..| ++.++||+
T Consensus 228 ~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 228 RVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp ECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 0002222222222 4678999999999988777654 36789999
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE----ec--CCCCCHHHHHHHhhcccccCCCccccccCC
Q 015196 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS--SHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (411)
Q Consensus 297 ~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----~~--~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~ 370 (411)
++..+|..+++.|++| .++|||||+++++|+|+|++++||. ++ ..+.|...+.||+||+||.|.+
T Consensus 306 l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~-------- 376 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD-------- 376 (702)
T ss_dssp SCHHHHHHHHHHHHTT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC--------
T ss_pred CCHHHHHHHHHHHHCC-CCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC--------
Confidence 9999999999999998 9999999999999999999999887 32 1234899999999999999843
Q ss_pred CcceeEEEEEeecCCc
Q 015196 371 KEEYNAFFYSLVSTDT 386 (411)
Q Consensus 371 ~~~~~~~~y~~~~~~~ 386 (411)
..+..|.+..+..
T Consensus 377 ---~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 377 ---ERGEAIIIVGKRD 389 (702)
T ss_dssp ---SCEEEEEECCGGG
T ss_pred ---CCceEEEEecCcc
Confidence 3466666665544
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.1e-33 Score=284.42 Aligned_cols=308 Identities=15% Similarity=0.174 Sum_probs=207.4
Q ss_pred CCChhHHHHHHH-HHhCCCCcceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 25 QPRPYQEKSLSK-MFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 25 ~l~~~Q~~ai~~-~~~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.|+|+|.+++.. +..+ .++++++|||+|||+++..++. ..+.++++++|+++|+.|+.+++..+... ...+
T Consensus 23 ~l~~~Q~~~i~~~~~~~---~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v 98 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG---KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRV 98 (720)
T ss_dssp BCCHHHHHHHTTTGGGT---CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCE
T ss_pred CCCHHHHHHHHHHhcCC---CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEE
Confidence 799999999998 4554 4899999999999999866543 23679999999999999999999765332 3467
Q ss_pred EEEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhc-cc
Q 015196 100 CRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (411)
Q Consensus 100 ~~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~-~~ 172 (411)
+.++|+... ...+..+|+|+|++++.....+ ......++++||+||+|.+.+. .+..++..++ ..
T Consensus 99 ~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (720)
T 2zj8_A 99 AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--------GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170 (720)
T ss_dssp EEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTB
T ss_pred EEecCCCCccccccCCCCEEEECHHHHHHHHHc--------ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCC
Confidence 777774332 1234689999999987543211 0000246789999999998753 3444555444 56
Q ss_pred cEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEE-EcCCCHHHHHHHHhhhchhhhhhhhhcCCC
Q 015196 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (411)
Q Consensus 173 ~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (411)
++++||||+.+.. .+..+++...+..+ ..|...... ...... .+. .... .....
T Consensus 171 ~ii~lSATl~n~~----~~~~~l~~~~~~~~---------~rp~~l~~~~~~~~~~----~~~---~~~~-----~~~~~ 225 (720)
T 2zj8_A 171 QIIGLSATIGNPE----ELAEWLNAELIVSD---------WRPVKLRRGVFYQGFV----TWE---DGSI-----DRFSS 225 (720)
T ss_dssp EEEEEECCCSCHH----HHHHHTTEEEEECC---------CCSSEEEEEEEETTEE----EET---TSCE-----EECSS
T ss_pred eEEEEcCCcCCHH----HHHHHhCCcccCCC---------CCCCcceEEEEeCCee----ecc---ccch-----hhhhH
Confidence 8999999997532 23333432221111 111111110 000000 000 0000 00122
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC--------------------------------------Ccee
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------KPMI 293 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~--------------------------------------~~~i 293 (411)
+...+..++ ..+.++||||++++.++.++..|. +.++
T Consensus 226 ~~~~~~~~~-----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 226 WEELVYDAI-----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp TTHHHHHHH-----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHH-----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 223333333 236789999999999888777652 5678
Q ss_pred eCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE----ec---CCCCCHHHHHHHhhcccccCCCcccc
Q 015196 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS---SHAGSRRQEAQRLGRILRAKGKLEDR 366 (411)
Q Consensus 294 ~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----~~---~~~~s~~~~~Q~~GR~~R~~~~k~~~ 366 (411)
||+++..+|..+++.|++| .++|||||+++++|+|+|++++||. ++ ..+.|...+.||+||+||.|.
T Consensus 301 h~~l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~----- 374 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKG-IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY----- 374 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTT-SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT-----
T ss_pred cCCCCHHHHHHHHHHHHCC-CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC-----
Confidence 9999999999999999998 9999999999999999999999887 22 123589999999999999984
Q ss_pred ccCCCcceeEEEEEeecCCc
Q 015196 367 MAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 367 ~~~~~~~~~~~~y~~~~~~~ 386 (411)
+..+..|.+..+..
T Consensus 375 ------~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 ------DEVGEGIIVSTSDD 388 (720)
T ss_dssp ------CSEEEEEEECSSSC
T ss_pred ------CCCceEEEEecCcc
Confidence 33466667766555
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-33 Score=284.96 Aligned_cols=318 Identities=15% Similarity=0.172 Sum_probs=205.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
.|+|+|.+++..++..+ .++++++|||+|||+++..++. ..+.++++++|+++|+.|+.+++..+.. ....++
T Consensus 30 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~ 106 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVA 106 (715)
T ss_dssp BCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEE
Confidence 89999999999844433 4999999999999999877653 2367999999999999999999965432 234677
Q ss_pred EEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhccccE
Q 015196 101 RFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCK 174 (411)
Q Consensus 101 ~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~~~~~ 174 (411)
...|.... ...+..+|+|+|++++....... ...-.++++||+||+|++.+. .+..++..++..++
T Consensus 107 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~--------~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 107 MTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR--------PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp ECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC--------CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC--------hhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 77664322 12236899999999875432110 000246789999999998753 34445555567789
Q ss_pred EEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHH-HHHHHHhhhchhhhhhhhhcCCCcH
Q 015196 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALYVMNPNKF 253 (411)
Q Consensus 175 i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~ 253 (411)
++||||+.+.. .+..+++...+..+ +-..+............. ..-.+. . . ....+. ...
T Consensus 179 i~lSATl~n~~----~~~~~l~~~~~~~~-------~r~~~l~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~-~~~--- 239 (715)
T 2va8_A 179 LALSATISNYK----QIAKWLGAEPVATN-------WRPVPLIEGVIYPERKKKEYNVIFK-D--N-TTKKVH-GDD--- 239 (715)
T ss_dssp EEEESCCTTHH----HHHHHHTCEEEECC-------CCSSCEEEEEEEECSSTTEEEEEET-T--S-CEEEEE-SSS---
T ss_pred EEEcCCCCCHH----HHHHHhCCCccCCC-------CCCCCceEEEEecCCcccceeeecC-c--c-hhhhcc-cch---
Confidence 99999997532 23333332221111 001111111100000000 000000 0 0 000000 001
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----------------------------------------CCce
Q 015196 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------------------------------------RKPM 292 (411)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----------------------------------------~~~~ 292 (411)
.....+.+... .+.++||||++++.++.+++.| ++.+
T Consensus 240 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 22333333332 4679999999999988877665 2567
Q ss_pred eeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE----ecC------CCCCHHHHHHHhhcccccCCC
Q 015196 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS------HAGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 293 i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----~~~------~~~s~~~~~Q~~GR~~R~~~~ 362 (411)
+||+++..+|..+++.|.+| .++|||||+++++|+|+|++++||. +++ .+.|...+.||+||+||.|.+
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQR-KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTT-CSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred ECCCCCHHHHHHHHHHHHcC-CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 89999999999999999998 9999999999999999999999887 430 235899999999999999842
Q ss_pred ccccccCCCcceeEEEEEeecCCc
Q 015196 363 LEDRMAGGKEEYNAFFYSLVSTDT 386 (411)
Q Consensus 363 k~~~~~~~~~~~~~~~y~~~~~~~ 386 (411)
..+..|.+..+..
T Consensus 397 -----------~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 -----------QIGESIVVVRDKE 409 (715)
T ss_dssp -----------SCEEEEEECSCGG
T ss_pred -----------CCceEEEEeCCch
Confidence 3455666665443
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.1e-32 Score=289.25 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=199.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c-------------CCceEEEEcChhhHHHHHHHHHH
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-------------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~-------------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.|.+.|.+++..++..+ .+.+++||||+|||++|..++.+ + +.++++++|+++|+.|..++|.+
T Consensus 79 ~ln~iQs~~~~~al~~~--~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp BCCHHHHHTHHHHHTCC--CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC--CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 58899999999998765 59999999999999998877642 1 34799999999999999999988
Q ss_pred HhCCCCCcEEEEcCchhh--hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHH
Q 015196 91 WSTIQDDQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKV 165 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~--~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~ 165 (411)
.++.....|+.++|+... ......+|+|+|++++....++.... ..+ ...++||+||+|.+.++ .+..+
T Consensus 157 ~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~----~~l--~~v~~vIiDEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 157 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER----TYT--QLVRLIILDEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTH----HHH--TTEEEEEETTGGGGGSTTHHHHHHH
T ss_pred HHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccc----hhh--cCcCEEEEecchhcCCccHHHHHHH
Confidence 776555678888876432 12345899999999887665443221 122 56789999999988764 23222
Q ss_pred HHh-------h-ccccEEEEeeecccCchhhhhhhhhhcc--cchhhchHHHHhcCCcccceeEEE--EcCCCHHHHHHH
Q 015196 166 ISL-------T-KSHCKLGLTATLVREDERITDLNFLIGP--KLYEANWLDLVKGGFIANVQCAEV--WCPMTKEFFSEY 233 (411)
Q Consensus 166 ~~~-------~-~~~~~i~lSATp~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 233 (411)
+.. . ...++|+||||..+..+...++..--.. ..+..+ ..|+..... ...... ....+
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~---------~RPvpL~~~~~~~~~~~-~~~~~ 300 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNS---------FRPVPLEQTYVGITEKK-AIKRF 300 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGG---------GCSSCEEEECCEECCCC-HHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCC---------CccCccEEEEeccCCcc-hhhhh
Confidence 221 1 2347999999986543332222110000 001000 112221111 111110 00110
Q ss_pred HhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------------------------
Q 015196 234 LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------- 288 (411)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------------------------- 288 (411)
... ...+...+... ..+.++||||+++..++.+++.+
T Consensus 301 ~~~----------------~~~~~~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1724)
T 4f92_B 301 QIM----------------NEIVYEKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 362 (1724)
T ss_dssp HHH----------------HHHHHHHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHH
T ss_pred HHH----------------HHHHHHHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHH
Confidence 000 01111111111 23568999999988877766554
Q ss_pred -----------------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE----ecCC-----
Q 015196 289 -----------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISSH----- 342 (411)
Q Consensus 289 -----------------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----~~~~----- 342 (411)
+++++||+++..+|..+.+.|++| .++|||||++++.|+|+|..++||. +++.
T Consensus 363 ~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G-~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~ 441 (1724)
T 4f92_B 363 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT 441 (1724)
T ss_dssp HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT-CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEE
T ss_pred hhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcc
Confidence 256799999999999999999998 9999999999999999998888874 2111
Q ss_pred CCCHHHHHHHhhcccccCCC
Q 015196 343 AGSRRQEAQRLGRILRAKGK 362 (411)
Q Consensus 343 ~~s~~~~~Q~~GR~~R~~~~ 362 (411)
+-+..+|.||+||+||+|.+
T Consensus 442 ~ls~~~~~Qm~GRAGR~g~d 461 (1724)
T 4f92_B 442 ELGALDILQMLGRAGRPQYD 461 (1724)
T ss_dssp ECCHHHHHHHHTTBSCTTTC
T ss_pred cCCHHHHHHhhhhccCCCCC
Confidence 12789999999999999943
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=2.6e-30 Score=268.98 Aligned_cols=261 Identities=18% Similarity=0.154 Sum_probs=180.3
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.++|+|+|++++..++.+. ++++.||||+|||++++.++.. .+.++||++|+++|+.|+.+.|.++. .....+
T Consensus 76 gf~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v 151 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKI 151 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCE
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeE
Confidence 4689999999999998865 8999999999999987766544 45789999999999999999999964 344567
Q ss_pred EEEcCchhh--------hhc-CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----------
Q 015196 100 CRFTSDSKE--------RFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------- 160 (411)
Q Consensus 100 ~~~~~~~~~--------~~~-~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---------- 160 (411)
..++++... .+. +..+|+|+|++.+.... ..+...++++||+||||++...
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l----------~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR----------EKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH----------HHHHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH----------HhhcccCcCEEEEeCCCccccccccchhhhHh
Confidence 777775432 122 34899999999875432 2344578999999999976531
Q ss_pred -----h-HHHHHHhh------------ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEE
Q 015196 161 -----M-FRKVISLT------------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (411)
Q Consensus 161 -----~-~~~~~~~~------------~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
. ...++..+ ...+++++|||+............+....+. .............
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~---------~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---------RLVSVARNITHVR 292 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCC---------BCCCCCCCEEEEE
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEec---------cCCCCcCCceeEE
Confidence 1 34444444 3458999999965433221111111110000 0000111111111
Q ss_pred cCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCc-eeeCC
Q 015196 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKP-MIYGA 296 (411)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~-~i~g~ 296 (411)
.. ..+...+..++... +.++||||++++.++.++..| .+. .+||
T Consensus 293 ~~-------------------------~~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg- 342 (1104)
T 4ddu_A 293 IS-------------------------SRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE- 342 (1104)
T ss_dssp ES-------------------------CCCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-
T ss_pred Ee-------------------------cCHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-
Confidence 11 12333444445442 578999999999999999998 244 5676
Q ss_pred CCHHHHHHHHHHhcCCCCeeEEEe----eccCccccCccC-ccEEEEecCC
Q 015196 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSH 342 (411)
Q Consensus 297 ~~~~~r~~~~~~f~~~~~~~vlv~----t~~~~~Gid~~~-~~~vi~~~~~ 342 (411)
+|.+ ++.|++| +.+|||| |+++++|+|+|+ +++||+++.|
T Consensus 343 ----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P 387 (1104)
T 4ddu_A 343 ----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTP 387 (1104)
T ss_dssp ----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCC
T ss_pred ----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCC
Confidence 2455 9999998 9999999 999999999999 9999999666
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.8e-30 Score=279.18 Aligned_cols=303 Identities=14% Similarity=0.167 Sum_probs=200.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCC-CCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~-~~~~ 98 (411)
.+.|.|.+++..++..+ .++++.||||+|||+++..++.+. +.++++++|+++|+.|..+++.+.++. ....
T Consensus 926 ~fnpiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp BCCHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 48899999999998765 589999999999999987776432 468999999999999999998765442 3456
Q ss_pred EEEEcCchhhh--hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHHHHhh----
Q 015196 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT---- 169 (411)
Q Consensus 99 v~~~~~~~~~~--~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~~~~~---- 169 (411)
++.++|+.... ....++|+|+|++.+....+++.... .+ .+.++||+||+|.+.+. .+..++..+
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~----~l--~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~ 1077 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRK----NV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYIS 1077 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCH----HH--HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCccccc----cc--ceeeEEEeechhhcCCCCCccHHHHHHHHHHHH
Confidence 88888764421 23458999999998765544332211 12 46789999999998764 233333222
Q ss_pred ----ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhh
Q 015196 170 ----KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (411)
Q Consensus 170 ----~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (411)
...++++||||..+..+...++..-- ...+.+.. ..--.|...+....+..... ......
T Consensus 1078 ~~~~~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~-----~~RPvpL~~~i~~~~~~~~~-~~~~~~--------- 1141 (1724)
T 4f92_B 1078 SQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHP-----NVRPVPLELHIQGFNISHTQ-TRLLSM--------- 1141 (1724)
T ss_dssp HTTSSCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCG-----GGCSSCEEEEEEEECCCSHH-HHHHTT---------
T ss_pred hhcCCCceEEEEeCCCCCHHHHHHHhCCCC-CCeEEeCC-----CCCCCCeEEEEEeccCCCch-hhhhhh---------
Confidence 23489999999875444333332100 00000000 00001112212222211111 011100
Q ss_pred hhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-------------------------------------
Q 015196 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------------- 288 (411)
Q Consensus 246 ~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l------------------------------------- 288 (411)
...+...+..+ ..+.++||||+++..++.++..+
T Consensus 1142 -------~~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1142 -------AKPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp -------HHHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred -------cchHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 01112222222 34678999999998887766543
Q ss_pred --CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEec----CC-----CCCHHHHHHHhhccc
Q 015196 289 --RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS----SH-----AGSRRQEAQRLGRIL 357 (411)
Q Consensus 289 --~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~----~~-----~~s~~~~~Q~~GR~~ 357 (411)
+++++||+++..+|..+++.|++| .++|||||+++++|+|+|...+||... .. +-+..+|.|++||+|
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSG-AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 356899999999999999999998 999999999999999999888877421 10 127889999999999
Q ss_pred ccCC
Q 015196 358 RAKG 361 (411)
Q Consensus 358 R~~~ 361 (411)
|.|.
T Consensus 1292 R~g~ 1295 (1724)
T 4f92_B 1292 RPLQ 1295 (1724)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 9995
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.2e-28 Score=256.59 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=171.5
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCC--
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD-- 97 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~-- 97 (411)
.+.| |+|.+++..++.+. ++++.+|||+|||+.++.++.. .+.++||++|+++|+.|+.+.+.+++.....
T Consensus 55 g~~p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred CCCH-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 4568 99999999999775 8999999999999855555443 3578999999999999999999988754444
Q ss_pred --cEEEEcCchhh--------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc--hhHHHH
Q 015196 98 --QICRFTSDSKE--------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKV 165 (411)
Q Consensus 98 --~v~~~~~~~~~--------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~~~~~ 165 (411)
.++.++|+... .+.. .+|+|+|++.|.....+ + ..+++||+||||++.+ ..+..+
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----------L--~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----------L--GHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----------S--CCCSEEEESCHHHHHTSTHHHHHH
T ss_pred cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----------h--ccCCEEEEeChhhhhhccccHHHH
Confidence 67777764321 1223 89999999988654421 2 3778999999999876 344444
Q ss_pred HHhhc------------cccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHH
Q 015196 166 ISLTK------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233 (411)
Q Consensus 166 ~~~~~------------~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (411)
...+. ..+.+++|||+......... ++.... ... + .........+.....
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~---~~~~~~-~i~---v-~~~~~~~~~i~~~~~---------- 259 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAE---LFRQLL-NFD---I-GSSRITVRNVEDVAV---------- 259 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHH---HHHHHH-CCC---C-SCCEECCCCEEEEEE----------
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHH---Hhhcce-EEE---c-cCcccCcCCceEEEe----------
Confidence 44432 23678999998765211111 111000 000 0 000000000111100
Q ss_pred HhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----CceeeCCCCHHHHHHHHHHh
Q 015196 234 LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAF 309 (411)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~i~g~~~~~~r~~~~~~f 309 (411)
...+...+..+++.. +.++||||++++.++.+++.|. +..+||++ ..+++.|
T Consensus 260 ---------------~~~k~~~L~~ll~~~----~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F 315 (1054)
T 1gku_B 260 ---------------NDESISTLSSILEKL----GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKF 315 (1054)
T ss_dssp ---------------SCCCTTTTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHH
T ss_pred ---------------chhHHHHHHHHHhhc----CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHH
Confidence 122223334444322 5689999999999999999985 45778887 3678899
Q ss_pred cCCCCeeEEEe----eccCccccCccCc-cEEEEecCC
Q 015196 310 KCSRDLNTIFL----SKVGDNSIDIPEA-NVIIQISSH 342 (411)
Q Consensus 310 ~~~~~~~vlv~----t~~~~~Gid~~~~-~~vi~~~~~ 342 (411)
++| +.+|||| |+++++|+|+|++ ++||.++.|
T Consensus 316 ~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 316 VEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHT-SCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HcC-CCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 998 9999999 8999999999995 999998665
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=1.1e-28 Score=235.79 Aligned_cols=262 Identities=18% Similarity=0.152 Sum_probs=166.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-H---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-C---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
++.|.|+ ++..++.+. ..+++.+|||+|||++++..+ . ..+.+++|++|+++|+.|+.+.+..+ .+.
T Consensus 4 q~~~iq~-~i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL------PIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred CCCCcHH-HHHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc------eee
Confidence 4556664 566667655 355889999999999755543 2 23569999999999999999887532 222
Q ss_pred EEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH---HH---HhhccccE
Q 015196 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VI---SLTKSHCK 174 (411)
Q Consensus 101 ~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~---~~---~~~~~~~~ 174 (411)
...............|.++|++.+... +.......++++||+||||++. ..... .+ ......++
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTD-PCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHH---------HHHCSCCCCCSEEEEETTTCCS-HHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeccccccCCCCceEEEEChHHHHHH---------hhCcccccCCCEEEEeCCccCC-cchHHHHHHHHHhhcCCCceE
Confidence 222221111233456888888765321 1111112477999999999883 21111 11 11235689
Q ss_pred EEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHH
Q 015196 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (411)
Q Consensus 175 i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 254 (411)
++|||||...... .+.+ ...........+... | ..+
T Consensus 145 i~~SAT~~~~~~~-----~~~~------------------~~~~~~~~~~~p~~~---~----------------~~~-- 180 (451)
T 2jlq_A 145 IFMTATPPGSTDP-----FPQS------------------NSPIEDIEREIPERS---W----------------NTG-- 180 (451)
T ss_dssp EEECSSCTTCCCS-----SCCC------------------SSCEEEEECCCCSSC---C----------------SSS--
T ss_pred EEEccCCCccchh-----hhcC------------------CCceEecCccCCchh---h----------------HHH--
Confidence 9999999642221 0000 000111110110000 0 000
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccC
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid 329 (411)
...+. ..+.++||||++++.++.+++.|. +..+||.+ +..+++.|++| +.+|||||+++++|+|
T Consensus 181 -~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 181 -FDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVVTTDISEMGAN 249 (451)
T ss_dssp -CHHHH-----HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEEECGGGGSSCC
T ss_pred -HHHHH-----hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEEECCHHHhCcC
Confidence 11111 125589999999999999999993 44567754 45789999998 9999999999999999
Q ss_pred ccCccEEEEec-------------------CCCCCHHHHHHHhhcccccCC
Q 015196 330 IPEANVIIQIS-------------------SHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 330 ~~~~~~vi~~~-------------------~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+ ++||.++ ..+.|...|+|++||+||.|.
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 999 8888653 033589999999999999995
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=3e-28 Score=231.33 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=155.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~ 119 (411)
+++++.+|||+|||++++.++. ..+.+++|++|+++|+.|+.+.|.. . .+....+...........+.++
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~---~---~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG---E---PIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT---S---CEEEC---------CCCSEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC---C---eEEEEecCccccCCCCceEEEE
Confidence 4889999999999999755443 3457999999999999999887752 2 4554444322211223445555
Q ss_pred ecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHHHHhh--ccccEEEEeeecccCchhhhhhhhh
Q 015196 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--KSHCKLGLTATLVREDERITDLNFL 194 (411)
Q Consensus 120 t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~~~~~--~~~~~i~lSATp~~~~~~~~~~~~~ 194 (411)
|...+.. .+.......++++||+||+|++... ....+.... ...++++|||||...... +
T Consensus 77 ~~~~l~~---------~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~------~ 141 (431)
T 2v6i_A 77 CHSTFTM---------KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA------F 141 (431)
T ss_dssp EHHHHHH---------HHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS------S
T ss_pred chHHHHH---------HHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh------h
Confidence 5554321 1112211357899999999998422 222222221 356899999999853221 0
Q ss_pred hcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 015196 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (411)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf 274 (411)
... -.+. ..+...... ......+..+. ..+.++|||
T Consensus 142 ~~~---------------~~~i--~~~~~~~~~----------------------~~~~~~~~~l~-----~~~~~~lVF 177 (431)
T 2v6i_A 142 PPS---------------NSPI--IDEETRIPD----------------------KAWNSGYEWIT-----EFDGRTVWF 177 (431)
T ss_dssp CCC---------------SSCC--EEEECCCCS----------------------SCCSSCCHHHH-----SCSSCEEEE
T ss_pred cCC---------------CCce--eeccccCCH----------------------HHHHHHHHHHH-----cCCCCEEEE
Confidence 000 0011 111100000 00000111111 125589999
Q ss_pred ecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEE-------------
Q 015196 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVI------------- 336 (411)
Q Consensus 275 ~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~v------------- 336 (411)
|++++.++.+++.| .+..+||+ +|..+++.|++| +++|||||+++++|+|+| +..|
T Consensus 178 ~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~ 251 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLD 251 (431)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEET
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEEECchHHcCcccC-CcEEEecCccccceecc
Confidence 99999999999998 35678886 577899999998 999999999999999999 5543
Q ss_pred ----EEecCCCCCHHHHHHHhhcccccCC
Q 015196 337 ----IQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 337 ----i~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+....| .+...|+|++||+||.++
T Consensus 252 ~~~vi~~~~p-~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 252 GRVSMQGPIA-ITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp TEEEEEEEEE-CCHHHHHHHHTTSSCCTT
T ss_pred cceeeccccc-CCHHHHHHhhhccCCCCC
Confidence 444344 589999999999999985
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.4e-27 Score=240.62 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=188.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----c--CCceEEEEcChhhHHHHHHHHHHHhCCCC-C
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I--KKSCLCLATNAVSVDQWAFQFKLWSTIQD-D 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~ 97 (411)
.|.+.|++++..++..+ ..+++.+|||+|||...-.++.. . +.++++++|+++|+.|+...+...++... .
T Consensus 93 lP~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CChHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhh
Confidence 56778999988887654 37899999999999953333221 1 44699999999999999988877665432 1
Q ss_pred cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCC-CCch-----hHHHHHHhhcc
Q 015196 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAH-----MFRKVISLTKS 171 (411)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~-~~~~-----~~~~~~~~~~~ 171 (411)
.++.-. ..........+|+++|++.+... ........++++||+||+|. .... ....+......
T Consensus 171 ~vG~~i-~~~~~~~~~~~I~v~T~G~l~r~---------l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 171 EVGYSI-RFENKTSNKTILKYMTDGMLLRE---------AMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp TEEEEE-TTEEECCTTCSEEEEEHHHHHHH---------HHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred eeccee-ccccccCCCCCEEEECHHHHHHH---------HhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 233111 11111234578999999877432 11112235788999999996 3332 22223333345
Q ss_pred ccEEEEeeecccCchhhhhhhhhhcc-cchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCC
Q 015196 172 HCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (411)
Q Consensus 172 ~~~i~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (411)
.++++||||+.. . .+..+++. .... ..|-..+... ...+..... +
T Consensus 241 ~~iIl~SAT~~~--~---~l~~~~~~~~vi~-------v~gr~~pv~~--~~~~~~~~~---~----------------- 286 (773)
T 2xau_A 241 LKIIIMSATLDA--E---KFQRYFNDAPLLA-------VPGRTYPVEL--YYTPEFQRD---Y----------------- 286 (773)
T ss_dssp CEEEEEESCSCC--H---HHHHHTTSCCEEE-------CCCCCCCEEE--ECCSSCCSC---H-----------------
T ss_pred ceEEEEeccccH--H---HHHHHhcCCCccc-------ccCcccceEE--EEecCCchh---H-----------------
Confidence 689999999942 1 22233331 1111 0112222221 111111000 0
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC----------------CceeeCCCCHHHHHHHHHHhc----
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----------------KPMIYGATSHVERTKILQAFK---- 310 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----------------~~~i~g~~~~~~r~~~~~~f~---- 310 (411)
....+..+++.+....+.++||||++.++++.+++.|. +..+||+++..+|..+++.|.
T Consensus 287 -~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 287 -LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp -HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 01233444444432347799999999999988887763 456899999999999999999
Q ss_pred -CCCCeeEEEeeccCccccCccCccEEEEecC--------C---------CCCHHHHHHHhhcccccC
Q 015196 311 -CSRDLNTIFLSKVGDNSIDIPEANVIIQISS--------H---------AGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 311 -~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~--------~---------~~s~~~~~Q~~GR~~R~~ 360 (411)
+| ..+|||||+++++|+|+|++++||.+.. . +.|...|.||+||+||..
T Consensus 366 ~~g-~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~ 432 (773)
T 2xau_A 366 GRP-GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 432 (773)
T ss_dssp SSC-CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSS
T ss_pred CCC-ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCC
Confidence 87 9999999999999999999999998522 0 358999999999999985
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=9.2e-29 Score=235.31 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=149.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~ 119 (411)
+++++.+|||||||++++.++. ..+.+++|++|+++|+.|+.+.+..+ .+....+.. -.++
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~---------~~v~ 73 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF---------SAHG 73 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC---------CCCC
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc---------eecc
Confidence 4899999999999999755543 23468999999999999999988753 222221111 0256
Q ss_pred ecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hHHHHHHhhccccEEEEeeecccCchhhhhhhhh
Q 015196 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (411)
Q Consensus 120 t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~ 194 (411)
|++.+....................++++||+||+|++... .+..........++++|||||...... +
T Consensus 74 Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~------~ 147 (440)
T 1yks_A 74 SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDE------F 147 (440)
T ss_dssp CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS------S
T ss_pred CCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhh------h
Confidence 66555433221100000111111257789999999999321 111111111356899999999754321 1
Q ss_pred hcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 015196 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (411)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf 274 (411)
... ..+.. .+..... ...+...+..+.+ .+.++|||
T Consensus 148 ~~~---------------~~~~~--~~~~~~~----------------------~~~~~~~~~~l~~-----~~~~~lVF 183 (440)
T 1yks_A 148 PHS---------------NGEIE--DVQTDIP----------------------SEPWNTGHDWILA-----DKRPTAWF 183 (440)
T ss_dssp CCC---------------SSCEE--EEECCCC----------------------SSCCSSSCHHHHH-----CCSCEEEE
T ss_pred hhc---------------CCCee--EeeeccC----------------------hHHHHHHHHHHHh-----cCCCEEEE
Confidence 100 00111 1111000 0000011122221 26789999
Q ss_pred ecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEE-----------
Q 015196 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----------- 338 (411)
Q Consensus 275 ~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~----------- 338 (411)
|++++.++.+++.| .+..+|| .+|..+++.|++| +++|||||+++++|+|+| +++||.
T Consensus 184 ~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~ 257 (440)
T 1yks_A 184 LPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVD 257 (440)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEET
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEEECChhheeeccC-ceEEEeCCccceeeecc
Confidence 99999999999998 3567888 3578889999998 999999999999999999 998874
Q ss_pred --------ecCCCCCHHHHHHHhhcccccC
Q 015196 339 --------ISSHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 339 --------~~~~~~s~~~~~Q~~GR~~R~~ 360 (411)
+..| .+...|+|++||+||.|
T Consensus 258 ~~~~~vi~~~~p-~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 258 EGRKVAIKGPLR-ISASSAAQRRGRIGRNP 286 (440)
T ss_dssp TTTEEEEEEEEE-CCHHHHHHHHTTSSCCT
T ss_pred cccceeeccccc-cCHHHHHHhccccCCCC
Confidence 4344 58999999999999985
No 50
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=2.3e-27 Score=233.47 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=166.8
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHH-HH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA-AC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~-~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
.+.|.|+.++..+..+ +++++.+|||+|||++++.. +. ..+.++||++|+++|+.|+.+.+..+ .++
T Consensus 171 ~~lpiq~~~i~~l~~g---~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~------~v~ 241 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKK---RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL------PIR 241 (618)
T ss_dssp CCCCCCCCCGGGGSTT---CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred cCCCccccCHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC------cee
Confidence 4456665555554544 48999999999999986444 32 23568999999999999999887632 233
Q ss_pred EEcCch-hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHHHHhh--ccccE
Q 015196 101 RFTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--KSHCK 174 (411)
Q Consensus 101 ~~~~~~-~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~~~~~--~~~~~ 174 (411)
+.... .........+.++|...+.. .........++++||+||||++... ....+...+ ...++
T Consensus 242 -~~~~~l~~~~tp~~~i~~~t~~~l~~---------~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~ 311 (618)
T 2whx_A 242 -YQTPAVKSDHTGREIVDLMCHATFTT---------RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAA 311 (618)
T ss_dssp -ECCTTSSCCCCSSSCEEEEEHHHHHH---------HHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEE
T ss_pred -EecccceeccCCCceEEEEChHHHHH---------HHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccE
Confidence 22221 11111233455566554421 1111111367899999999998422 223333333 34689
Q ss_pred EEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHH
Q 015196 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (411)
Q Consensus 175 i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 254 (411)
++|||||...... +.. .+.....+...... .....
T Consensus 312 il~SAT~~~~~~~------~~~-----------------~~~~~~~v~~~~~~----------------------~~~~~ 346 (618)
T 2whx_A 312 IFMTATPPGSTDP------FPQ-----------------SNSPIEDIEREIPE----------------------RSWNT 346 (618)
T ss_dssp EEECSSCTTCCCS------SCC-----------------CSSCEEEEECCCCS----------------------SCCSS
T ss_pred EEEECCCchhhhh------hhc-----------------cCCceeeecccCCH----------------------HHHHH
Confidence 9999999754221 110 01111111111100 00001
Q ss_pred HHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccC
Q 015196 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (411)
Q Consensus 255 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid 329 (411)
.+..+.+ .+.++||||++++.++.+++.| .+..+||. +|..+++.|++| +.+|||||+++++|+|
T Consensus 347 ll~~l~~-----~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 347 GFDWITD-----YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVVTTDISEMGAN 416 (618)
T ss_dssp SCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEEECGGGGTTCC
T ss_pred HHHHHHh-----CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEEECcHHHcCcc
Confidence 1222222 2568999999999999999998 35567874 688899999998 9999999999999999
Q ss_pred ccCccEE--------------------EEecCCCCCHHHHHHHhhcccccCC
Q 015196 330 IPEANVI--------------------IQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 330 ~~~~~~v--------------------i~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+| ++.| +.+..| .|..+|+||+||+||.+.
T Consensus 417 i~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P-~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 417 FR-AGRVIDPRRCLKPVILTDGPERVILAGPIP-VTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CC-CSEEEECCEEEEEEEECSSSCEEEEEEEEE-CCHHHHHHHHTTSSCCTT
T ss_pred cC-ceEEEECcceecceecccCCCceEEccccc-CCHHHHHHhccccCCCCC
Confidence 97 8877 444334 589999999999999974
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1.5e-27 Score=232.68 Aligned_cols=256 Identities=17% Similarity=0.098 Sum_probs=169.5
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~ 105 (411)
++++|++++..+..+ +++++.||||+|||.++...+...+.+++|++|+++|+.|+.+.+.+.++. .++...+.
T Consensus 218 ~~~~q~~i~~~L~~~---~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~---~vg~~vG~ 291 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSF---QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGI---DPNIRTGV 291 (666)
T ss_dssp SCCCCCSCCCCCSSC---EEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSS
T ss_pred cHHHHHHHHHHHHcC---CeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCC---CeeEEECc
Confidence 344444444333333 478999999999999888887777779999999999999999998887764 34444444
Q ss_pred hhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh---HHHHHHhhccc---cEEEEee
Q 015196 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM---FRKVISLTKSH---CKLGLTA 179 (411)
Q Consensus 106 ~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~---~~~~~~~~~~~---~~i~lSA 179 (411)
.. .....+|+|+|++.|.... .+...++++||+||+|.+.... +..++..+... .++++||
T Consensus 292 ~~--~~~~~~IlV~TPGrLl~~~-----------~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 292 RT--ITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp CE--ECCCCSEEEEEHHHHHHTT-----------SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred Ee--ccCCCCEEEECcHHHHhCC-----------CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 32 3456899999999773221 1223568899999998876542 33344444322 3688899
Q ss_pred ecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHH
Q 015196 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259 (411)
Q Consensus 180 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 259 (411)
|+...... ..+. ...+....... . .. ..... .
T Consensus 359 T~~~~i~~-------~~p~-------------------i~~v~~~~~~~-----i---~~-~~~~~--------~----- 390 (666)
T 3o8b_A 359 TPPGSVTV-------PHPN-------------------IEEVALSNTGE-----I---PF-YGKAI--------P----- 390 (666)
T ss_dssp SCTTCCCC-------CCTT-------------------EEEEECBSCSS-----E---EE-TTEEE--------C-----
T ss_pred CCCccccc-------CCcc-------------------eEEEeecccch-----h---HH-HHhhh--------h-----
Confidence 99752110 0000 00110000000 0 00 00000 0
Q ss_pred HHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCcc
Q 015196 260 IRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334 (411)
Q Consensus 260 ~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~ 334 (411)
++. ..+.++||||++++.++.+++.| .+..+||+++..+ |.++ ..+|||||+++++|+|++ ++
T Consensus 391 l~~---~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 IEA---IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp GGG---SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCEEEEECTTHHHHCCCC-BS
T ss_pred hhh---ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCcEEEECChHHccCCCC-Cc
Confidence 000 23779999999999999999998 3567899998754 5555 569999999999999997 99
Q ss_pred EEEE----------ec--C--------CCCCHHHHHHHhhcccccCC
Q 015196 335 VIIQ----------IS--S--------HAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 335 ~vi~----------~~--~--------~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+||. ++ + .+.|...|+||+||+|| +.
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~ 504 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GR 504 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SS
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CC
Confidence 8884 22 0 23588999999999999 53
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=2.1e-28 Score=242.22 Aligned_cols=262 Identities=15% Similarity=0.137 Sum_probs=164.0
Q ss_pred CCChhHH-----HHHHHHH------hCCCCcceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHH
Q 015196 25 QPRPYQE-----KSLSKMF------GNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 25 ~l~~~Q~-----~ai~~~~------~~~~~~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
.+++.|+ +++..++ .+ ++.++.+|||+|||++++.++. ..+.+++|++|+++|+.|+.+.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g---~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKR---QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTT---CEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh
Confidence 6788888 8887665 33 4899999999999999755543 235689999999999999999887
Q ss_pred HHhCCCCCcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHHHHH
Q 015196 90 LWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVI 166 (411)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~~~~ 166 (411)
.+ + +....+... .++|++.+....................++++||+||+|++... ....+.
T Consensus 292 ~~-~-----i~~~~~~l~---------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~ 356 (673)
T 2wv9_A 292 GL-P-----VRYLTPAVQ---------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIA 356 (673)
T ss_dssp TS-C-----CEECCC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHH
T ss_pred cC-C-----eeeeccccc---------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHH
Confidence 54 1 221111110 13444433322111100011111112357899999999999432 222122
Q ss_pred Hhh--ccccEEEEeeecccCchhhhhhhhhhcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhh
Q 015196 167 SLT--KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (411)
Q Consensus 167 ~~~--~~~~~i~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (411)
..+ ...++++|||||...-.. +... -.+ +..+......
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~~------~~~~---------------~~~--i~~v~~~~~~----------------- 396 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSDP------FPDT---------------NSP--VHDVSSEIPD----------------- 396 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCS------SCCC---------------SSC--EEEEECCCCS-----------------
T ss_pred HhccccCCcEEEEcCCCChhhhh------hccc---------------CCc--eEEEeeecCH-----------------
Confidence 222 356899999999743221 0000 001 1111111000
Q ss_pred hhhcCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEE
Q 015196 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (411)
Q Consensus 245 ~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv 319 (411)
......+..+. ..+.++||||++++.++.+++.| .+..+||. +|..+++.|++| +.+|||
T Consensus 397 -----~~~~~~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLV 461 (673)
T 2wv9_A 397 -----RAWSSGFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVI 461 (673)
T ss_dssp -----SCCSSCCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEE
T ss_pred -----HHHHHHHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEE
Confidence 00001112222 23678999999999999999998 35678883 788999999998 999999
Q ss_pred eeccCccccCccCccEEEEec-------------------CCCCCHHHHHHHhhcccccC
Q 015196 320 LSKVGDNSIDIPEANVIIQIS-------------------SHAGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 320 ~t~~~~~Gid~~~~~~vi~~~-------------------~~~~s~~~~~Q~~GR~~R~~ 360 (411)
||+++++|+|+| ++.||.+. ..+.|...|+|++||+||.+
T Consensus 462 aTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 462 TTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP 520 (673)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS
T ss_pred ECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC
Confidence 999999999999 99888621 12358899999999999984
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=8.1e-28 Score=230.20 Aligned_cols=247 Identities=16% Similarity=0.164 Sum_probs=152.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~ 119 (411)
+++++.+|||+|||++++..+. ..+.++||++|+++|+.|+.+.+..+ .+................+.++
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~~~t~~~~i~~~ 95 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQREHQGNEIVDVM 95 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS------CEEECC--------CCCSEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc------eEeEEecccccCCCCCcEEEEE
Confidence 4889999999999998655543 23578999999999999999988632 2222222211111123445566
Q ss_pred ecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-----hHHHHHHhhccccEEEEeeecccCchhhhhhhhh
Q 015196 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (411)
Q Consensus 120 t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-----~~~~~~~~~~~~~~i~lSATp~~~~~~~~~~~~~ 194 (411)
|...+.. .........++++||+||||+.... .+..........++++|||||...... +
T Consensus 96 ~~~~l~~---------~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~------~ 160 (459)
T 2z83_A 96 CHATLTH---------RLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDP------F 160 (459)
T ss_dssp EHHHHHH---------HHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS------S
T ss_pred chHHHHH---------HhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhh------h
Confidence 6654321 1111111357789999999996422 222222223466899999999743221 0
Q ss_pred hcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 015196 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (411)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf 274 (411)
.. ...+.. .+....... ....... . +. ..+.++|||
T Consensus 161 ~~---------------~~~pi~--~~~~~~~~~-------------------~~~~~~~---~-l~----~~~~~~LVF 196 (459)
T 2z83_A 161 PD---------------SNAPIH--DLQDEIPDR-------------------AWSSGYE---W-IT----EYAGKTVWF 196 (459)
T ss_dssp CC---------------CSSCEE--EEECCCCSS-------------------CCSSCCH---H-HH----HCCSCEEEE
T ss_pred cc---------------CCCCeE--EecccCCcc-------------------hhHHHHH---H-HH----hcCCCEEEE
Confidence 00 001111 110000000 0000111 1 11 125689999
Q ss_pred ecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEe----------
Q 015196 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---------- 339 (411)
Q Consensus 275 ~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~---------- 339 (411)
|++++.++.+++.| .+..+||. +|..+++.|++| +.+|||||+++++|+|+|+ +.||..
T Consensus 197 ~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~ 270 (459)
T 2z83_A 197 VASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE 270 (459)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC
T ss_pred eCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEEECChHHhCeecCC-CEEEECCccccccccc
Confidence 99999999999998 34567774 677789999998 9999999999999999999 888862
Q ss_pred ---------cCCCCCHHHHHHHhhcccccCC
Q 015196 340 ---------SSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 340 ---------~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
...+.|...|+||+||+||.|.
T Consensus 271 ~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 271 EGEGRVILGNPSPITSASAAQRRGRVGRNPN 301 (459)
T ss_dssp SSSCEEEECSCEECCHHHHHHHHTTSSCCTT
T ss_pred ccccccccccCCCCCHHHHHHhccccCCCCC
Confidence 1234689999999999999984
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=2.4e-26 Score=226.86 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=170.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhh---cCCCcEEEEe
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF---RGNAGVVVTT 120 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~I~v~t 120 (411)
+.+++.||||+|||..++..+... +..++++|+++|+.|+.+++.+. +. .++.+.|+..... ....+++++|
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~-g~---~v~lltG~~~~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA-GV---PCDLVTGEERVTVQPNGKQASHVSCT 230 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHT-TC---CEEEECSSCEECCSTTCCCCSEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc-CC---cEEEEECCeeEEecCCCcccceeEec
Confidence 478999999999999777666554 45699999999999999999885 33 5777777644321 1236789999
Q ss_pred cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHHHHhhc--cccEEEEeeecccCchhhhhhhhh
Q 015196 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK--SHCKLGLTATLVREDERITDLNFL 194 (411)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~~~~~~--~~~~i~lSATp~~~~~~~~~~~~~ 194 (411)
.+.+.. ...++++|+||+|++.+. .+...+..+. ..+++++|||... ...+...
T Consensus 231 ~e~~~l----------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~----i~~l~~~ 290 (677)
T 3rc3_A 231 VEMCSV----------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDL----VMELMYT 290 (677)
T ss_dssp GGGCCS----------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHH----HHHHHHH
T ss_pred HhHhhh----------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHH----HHHHHHh
Confidence 876642 256689999999998755 3444444443 3478889999421 1111111
Q ss_pred hcccchhhchHHHHhcCCcccceeEEEEcCCCHHHHHHHHhhhchhhhhhhhhcCCCcHHHHHHHHHHhhhcCCCeEEEE
Q 015196 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (411)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ivf 274 (411)
.+.. ..+........ ... .... +..+. ......+||
T Consensus 291 ~~~~-----------------~~v~~~~r~~~-----------l~~--------~~~~---l~~l~-----~~~~g~iIf 326 (677)
T 3rc3_A 291 TGEE-----------------VEVRDYKRLTP-----------ISV--------LDHA---LESLD-----NLRPGDCIV 326 (677)
T ss_dssp HTCC-----------------EEEEECCCSSC-----------EEE--------CSSC---CCSGG-----GCCTTEEEE
T ss_pred cCCc-----------------eEEEEeeecch-----------HHH--------HHHH---HHHHH-----hcCCCCEEE
Confidence 1110 00000000000 000 0000 00000 012235888
Q ss_pred ecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcC--CCCeeEEEeeccCccccCccCccEEEEecCC-----
Q 015196 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKC--SRDLNTIFLSKVGDNSIDIPEANVIIQISSH----- 342 (411)
Q Consensus 275 ~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~--~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~----- 342 (411)
|.+++.++.+++.| ++..+||+++..+|..+++.|++ | ..+|||||+++++|+|+ +++.||.+...
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~ 404 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSIN 404 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSBC----
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCccccccc
Confidence 99999999999988 47789999999999999999999 6 89999999999999999 89999987441
Q ss_pred --------CCCHHHHHHHhhcccccCC
Q 015196 343 --------AGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 343 --------~~s~~~~~Q~~GR~~R~~~ 361 (411)
+.|...|+||+||+||.|.
T Consensus 405 ~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 405 EKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp -------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCccccccCCHHHHHHHhcCCCCCCC
Confidence 3489999999999999995
No 55
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=9e-26 Score=222.24 Aligned_cols=321 Identities=16% Similarity=0.119 Sum_probs=185.4
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|+|.|..++..++.+ + +..|+||+|||+++..++. ..+..++|++|+++|+.|....+..+.......+
T Consensus 81 G~~pt~VQ~~~ip~ll~G----~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDG----N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTT----S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCC----C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 358999999999988864 3 8899999999999888764 2356899999999999986665554433223367
Q ss_pred EEEcCchhh---hhcCCCcEEEEecceec-----ccCCCChhhHHHHHHHhcCCccEEEEecCCCCC-ch----------
Q 015196 100 CRFTSDSKE---RFRGNAGVVVTTYNMVA-----FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH---------- 160 (411)
Q Consensus 100 ~~~~~~~~~---~~~~~~~I~v~t~~~l~-----~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~-~~---------- 160 (411)
+.+.++... .....++|+++|+..|. ...... ...+....+.++|+||||.+. +.
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~------~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~ 229 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLY------KEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQ 229 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSS------GGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEE
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcc------hhhhcccCCCEEEECchhhhhhhccccchhhcCC
Confidence 776665321 11124799999998772 111000 001122467799999999975 22
Q ss_pred ---------hHHHHHHhhc----------cccEE-----------------EEeeecccCchhhh-hh--hhhh------
Q 015196 161 ---------MFRKVISLTK----------SHCKL-----------------GLTATLVREDERIT-DL--NFLI------ 195 (411)
Q Consensus 161 ---------~~~~~~~~~~----------~~~~i-----------------~lSATp~~~~~~~~-~~--~~~~------ 195 (411)
....++..++ .+.++ ++|||......... .+ ..++
T Consensus 230 ~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dY 309 (844)
T 1tf5_A 230 AAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDY 309 (844)
T ss_dssp EECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTE
T ss_pred cccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCce
Confidence 1233344443 12222 45665321000000 00 0000
Q ss_pred --------------cccc----hhhchHHHHh--cCCcccceeEE---E---------------EcCCCH---HHHHHHH
Q 015196 196 --------------GPKL----YEANWLDLVK--GGFIANVQCAE---V---------------WCPMTK---EFFSEYL 234 (411)
Q Consensus 196 --------------~~~~----~~~~~~~~~~--~~~~~~~~~~~---~---------------~~~~~~---~~~~~~~ 234 (411)
+... ++..+.+.++ .+.-....... + .-.... ++...|-
T Consensus 310 iv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~ 389 (844)
T 1tf5_A 310 VVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN 389 (844)
T ss_dssp EEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred EEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC
Confidence 0000 1111112211 01100000000 0 000000 1111110
Q ss_pred hhhc---hhhhh--------hhhhcCCCcHHHHHHHH-HHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCC
Q 015196 235 KKEN---SKKKQ--------ALYVMNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGAT 297 (411)
Q Consensus 235 ~~~~---~~~~~--------~~~~~~~~k~~~~~~l~-~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~ 297 (411)
... +..+. .++.....|..++..++ +.+. .+.++||||++++.++.++..|. ...+||+.
T Consensus 390 -l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 390 -MQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp -CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred -CceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 000 00000 11111123444444444 3332 36789999999999999999993 45789998
Q ss_pred CHHHHHHHHHHhcCCCCeeEEEeeccCccccCcc--------CccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP--------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 298 ~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~--------~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
...++..+.+.|+.+ .|+|||+++++|+|++ +..+||.+..| .|...|.|++||+||.|.
T Consensus 467 ~~rEr~ii~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p-~s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG---AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH-ESRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp HHHHHHHHTTTTSTT---CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC-SSHHHHHHHHTTSSGGGC
T ss_pred cHHHHHHHHHcCCCC---eEEEeCCccccCcCccccchhhhcCCcEEEEecCC-CCHHHHHhhcCccccCCC
Confidence 877777666666665 7999999999999999 77799998666 699999999999999996
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=9.9e-25 Score=214.30 Aligned_cols=105 Identities=20% Similarity=0.121 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
|..++..++.... ..+.++||||.+++.++.+++.|. ...+||+....++..+.+.|+.| .|+|||+++++
T Consensus 426 K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~VtIATnmAgR 501 (853)
T 2fsf_A 426 KIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---AVTIATNMAGR 501 (853)
T ss_dssp HHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---CEEEEESCCSS
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eEEEecccccC
Confidence 5555555443221 347789999999999999999992 45789998877887788888887 79999999999
Q ss_pred ccCccCc-------------------------------------cEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 327 SIDIPEA-------------------------------------NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 327 Gid~~~~-------------------------------------~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+|++.. .+||.+..| .|...+.|++||+||.|.
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~p-es~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERH-ESRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCC-SSHHHHHHHHTTSSGGGC
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCC-CCHHHHHhhccccccCCC
Confidence 9999863 478887665 699999999999999996
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.1e-23 Score=207.32 Aligned_cols=316 Identities=15% Similarity=0.123 Sum_probs=185.0
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHH---HHHHHhCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAF---QFKLWSTIQD 96 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~---~~~~~~~~~~ 96 (411)
.+.|+|.|..++..++.+ + +..|+||+|||+++..++. ..++.++|++|+..|+.|... .+-+++|+
T Consensus 109 G~rP~~VQ~~~ip~Ll~G----~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGL-- 181 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLG----N-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGL-- 181 (922)
T ss_dssp SCCCCHHHHHHHHHHHTT----E-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHhHhcC----C-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCC--
Confidence 358899999999988754 3 8899999999999877653 235789999999999977554 44555554
Q ss_pred CcEEEEcCchhhh---hcCCCcEEEEecceecccCCCChhhHHHHH-------HHhcCCccEEEEecCCCCCc-------
Q 015196 97 DQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIE-------EIRNREWGLLLMDEVHVVPA------- 159 (411)
Q Consensus 97 ~~v~~~~~~~~~~---~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~-------~~~~~~~~lvIiDE~H~~~~------- 159 (411)
.++++.++.... ....++|+++|+..|... .+.+ .+....+.++|+||||.+..
T Consensus 182 -sv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfD--------yLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 182 -QVGVILATMTPDERRVAYNADITYGTNNEFGFD--------YLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp -CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHH--------HHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred -eEEEEeCCCCHHHHHHhcCCCEEEECchHhhHH--------HHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 677776653211 112479999999876210 0111 12224678999999998862
Q ss_pred -------------hhHHHHHHhhc---------cc-cEE-----------------EEeeecccCchhhh-hh--hhhh-
Q 015196 160 -------------HMFRKVISLTK---------SH-CKL-----------------GLTATLVREDERIT-DL--NFLI- 195 (411)
Q Consensus 160 -------------~~~~~~~~~~~---------~~-~~i-----------------~lSATp~~~~~~~~-~~--~~~~- 195 (411)
.....++..+. .. .++ ++|||......... .+ ..++
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 12334555554 22 333 45565321000000 00 0000
Q ss_pred -------------------ccc----chhhchHHHHh--cCCcccceeEEEE-cC-----------------CCH---HH
Q 015196 196 -------------------GPK----LYEANWLDLVK--GGFIANVQCAEVW-CP-----------------MTK---EF 229 (411)
Q Consensus 196 -------------------~~~----~~~~~~~~~~~--~~~~~~~~~~~~~-~~-----------------~~~---~~ 229 (411)
+.. .++..+.+.++ .+.-......... .. ... ++
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 000 01111122221 1111100000000 00 000 11
Q ss_pred HHHHHhhhc---hhhhh--------hhhhcCCCcHHHHHHHH-HHhhhcCCCeEEEEecChhHHHHHHHHhC-----Cce
Q 015196 230 FSEYLKKEN---SKKKQ--------ALYVMNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPM 292 (411)
Q Consensus 230 ~~~~~~~~~---~~~~~--------~~~~~~~~k~~~~~~l~-~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~ 292 (411)
...|- ... +..+. .++.....|..++...+ +.+ ..+.++||||.+++.++.+++.|. ...
T Consensus 413 ~~iY~-l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 413 HEIYK-LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHC-CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHhC-CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 11110 000 00000 11111122444444444 333 247789999999999999999992 457
Q ss_pred eeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCc---------------------------------------
Q 015196 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA--------------------------------------- 333 (411)
Q Consensus 293 i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~--------------------------------------- 333 (411)
+||+....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 490 Lnak~~~rEa~iia~agr~G---~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG---GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEE 566 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT---CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred ecCChhHHHHHHHHhcCCCC---eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 89998777777777788876 799999999999999964
Q ss_pred -------------cEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 334 -------------NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 334 -------------~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+||.+..| .|...+.|++||+||.|.
T Consensus 567 ~~~~~~~V~~~GGlhVI~te~p-es~riy~qr~GRTGRqGd 606 (922)
T 1nkt_A 567 ASKEAKEVIEAGGLYVLGTERH-ESRRIDNQLRGRSGRQGD 606 (922)
T ss_dssp TTHHHHHHHHTTSEEEEECSCC-SSHHHHHHHHHTSSGGGC
T ss_pred HHHhhhHHHhcCCcEEEeccCC-CCHHHHHHHhcccccCCC
Confidence 378887655 599999999999999996
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.92 E-value=5.6e-24 Score=185.30 Aligned_cols=151 Identities=29% Similarity=0.500 Sum_probs=122.7
Q ss_pred CCCc-ccCCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 15 DLNM-ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 15 ~~~~-~~~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
..++ .+...+.|+++|.+++..++.+. ++++++|||+|||.+++.++...+.++++++|+++|+.||.+++.++ +
T Consensus 82 ~~~~p~~~~~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~-~ 157 (237)
T 2fz4_A 82 PIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G 157 (237)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGG-C
T ss_pred cCCCccccCCCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-C
Confidence 3344 56677899999999999988765 79999999999999999999888899999999999999999999983 4
Q ss_pred CCCCc-EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccc
Q 015196 94 IQDDQ-ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH 172 (411)
Q Consensus 94 ~~~~~-v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~ 172 (411)
. . ++.+.+.... ..+|+|+|++.+.... ..+ ...+++||+||||++.+..+..+...+...
T Consensus 158 ~---~~v~~~~g~~~~----~~~i~v~T~~~l~~~~----------~~~-~~~~~llIiDEaH~l~~~~~~~i~~~~~~~ 219 (237)
T 2fz4_A 158 E---EYVGEFSGRIKE----LKPLTVSTYDSAYVNA----------EKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAP 219 (237)
T ss_dssp G---GGEEEESSSCBC----CCSEEEEEHHHHHHTH----------HHH-TTTCSEEEEECSSCCCTTTHHHHHHTCCCS
T ss_pred C---CeEEEEeCCCCC----cCCEEEEeHHHHHhhH----------HHh-cccCCEEEEECCccCCChHHHHHHHhccCC
Confidence 3 4 7788876543 4789999999775321 222 356899999999999999999888888888
Q ss_pred cEEEEeeecccCchh
Q 015196 173 CKLGLTATLVREDER 187 (411)
Q Consensus 173 ~~i~lSATp~~~~~~ 187 (411)
++++|||||.+.++.
T Consensus 220 ~~l~LSATp~r~D~~ 234 (237)
T 2fz4_A 220 FRLGLTATFEREDGR 234 (237)
T ss_dssp EEEEEEESCC-----
T ss_pred EEEEEecCCCCCCCC
Confidence 999999999988775
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.1e-22 Score=200.25 Aligned_cols=93 Identities=18% Similarity=0.298 Sum_probs=84.3
Q ss_pred CCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecC
Q 015196 267 RGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~ 341 (411)
.+.++||||++...++.+++.| .+.++||+++..+|..+++.|++| .++|||+|+++++|+|+|++++||++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCCCCCEEEEeCC
Confidence 4779999999999999999998 356789999999999999999998 9999999999999999999999999854
Q ss_pred C----CCCHHHHHHHhhcccccC
Q 015196 342 H----AGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 342 ~----~~s~~~~~Q~~GR~~R~~ 360 (411)
. +.|...|+|++||+||.+
T Consensus 517 d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 517 DKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp TSCSGGGSHHHHHHHHGGGTTST
T ss_pred cccCCCCCHHHHHHHHCccCcCC
Confidence 1 358999999999999986
No 60
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=1.6e-23 Score=188.05 Aligned_cols=161 Identities=22% Similarity=0.299 Sum_probs=126.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
++|+|||.+++..++.+. ++++.+|||+|||++++.++... ..++||++|+++|+.||.+++.+++......+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred cCccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 589999999999988764 78999999999999987776532 34899999999999999999999865544556
Q ss_pred EEEcCchhhh--hcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhh-ccccEEE
Q 015196 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLG 176 (411)
Q Consensus 100 ~~~~~~~~~~--~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~-~~~~~i~ 176 (411)
..+.++.... .....+|+|+|++.+..... .....+++||+||||++.++.+..++..+ ...++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~-----------~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-----------EWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSCG-----------GGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhHH-----------HHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEE
Confidence 6655543221 12468999999998755321 01256789999999999998888888776 5678999
Q ss_pred EeeecccCchhhhhhhhhhccc
Q 015196 177 LTATLVREDERITDLNFLIGPK 198 (411)
Q Consensus 177 lSATp~~~~~~~~~~~~~~~~~ 198 (411)
|||||.+.+.....+..++++.
T Consensus 258 lSATp~~~~~~~~~l~~l~g~i 279 (282)
T 1rif_A 258 LSGSLRDGKANIMQYVGMFGEI 279 (282)
T ss_dssp ECSSCCTTSTTHHHHHHHHCEE
T ss_pred EeCCCCCcchHHHHHHHhcCCc
Confidence 9999998777666677777765
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.89 E-value=5.2e-21 Score=190.12 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=84.1
Q ss_pred CCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecC
Q 015196 267 RGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~ 341 (411)
.+.++||||++...++.+++.| .+.++||+++..+|..+++.|++| .++|||+|+++++|+|+|++++||++..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 4679999999999999999998 356789999999999999999998 9999999999999999999999999854
Q ss_pred C----CCCHHHHHHHhhcccccC
Q 015196 342 H----AGSRRQEAQRLGRILRAK 360 (411)
Q Consensus 342 ~----~~s~~~~~Q~~GR~~R~~ 360 (411)
. +.|...|+|++||+||..
T Consensus 523 d~~G~p~s~~~~iQr~GRagR~~ 545 (661)
T 2d7d_A 523 DKEGFLRSERSLIQTIGRAARNA 545 (661)
T ss_dssp TCCTTTTSHHHHHHHHHTTTTST
T ss_pred ccccCCCCHHHHHHHhCcccCCC
Confidence 1 358999999999999985
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=3.9e-21 Score=164.34 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=109.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC-CC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~ 97 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.+++|++|+++|+.||.+.+.++.... ..
T Consensus 25 ~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 101 (206)
T 1vec_A 25 KPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA 101 (206)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSC
T ss_pred CCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 79999999999998765 89999999999999988765432 2479999999999999999999886433 45
Q ss_pred cEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----HHHh
Q 015196 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISL 168 (411)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~~~~ 168 (411)
.+..+.++... ......+|+|+|++.+.....+ ..+...+++++|+||||++.+..+.. +...
T Consensus 102 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 102 KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--------GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred eEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--------CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 56666664321 2335679999999977432211 01112467899999999988764443 3333
Q ss_pred hc-cccEEEEeeeccc
Q 015196 169 TK-SHCKLGLTATLVR 183 (411)
Q Consensus 169 ~~-~~~~i~lSATp~~ 183 (411)
++ ..+++++|||+..
T Consensus 174 ~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 174 LPKNRQILLYSATFPL 189 (206)
T ss_dssp SCTTCEEEEEESCCCH
T ss_pred CCccceEEEEEeeCCH
Confidence 33 4589999999963
No 63
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=5.9e-21 Score=164.94 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=109.2
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC-CC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~ 97 (411)
.|+|+|.+++..++.+. ++++.+|||+|||++++.++... ..++||++|+++|+.||.+++.++.... ..
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 112 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 49999999999998865 89999999999999988876543 2489999999999999999999986543 45
Q ss_pred cEEEEcCchhh-----hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-hhHH----HHH
Q 015196 98 QICRFTSDSKE-----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFR----KVI 166 (411)
Q Consensus 98 ~v~~~~~~~~~-----~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~~~~----~~~ 166 (411)
.+..+.++... .+ ....+|+|+|++.+.....+ ..+....++++|+||||++.+ ..+. .++
T Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp CEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred eEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--------CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 67777764321 11 23469999999977543211 111235678999999999875 2333 233
Q ss_pred Hhhc-cccEEEEeeecccC
Q 015196 167 SLTK-SHCKLGLTATLVRE 184 (411)
Q Consensus 167 ~~~~-~~~~i~lSATp~~~ 184 (411)
..+. ..+++++||||...
T Consensus 185 ~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HTSCSSSEEEEEESCCCTT
T ss_pred HhCCCcCeEEEEEeecCHH
Confidence 3333 45899999999754
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=163.61 Aligned_cols=154 Identities=21% Similarity=0.324 Sum_probs=102.1
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcChhhHHH-HHHHHHH
Q 015196 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQ-WAFQFKL 90 (411)
Q Consensus 21 ~~~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~~l~~q-~~~~~~~ 90 (411)
...+.|+|||.+++..++.+. ++++.+|||+|||++++.++... ..++||++|+++|+.| |.+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~---~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGK---NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCC---CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 345799999999999998764 89999999999999988876543 5799999999999999 8888888
Q ss_pred HhCCCCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch-hHHH
Q 015196 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK 164 (411)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~-~~~~ 164 (411)
+... ...+..+.++... ......+|+|+|++.+........... ...+....+++||+||||++... .+..
T Consensus 106 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~--~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 106 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE--DAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC---------CCCGGGCSEEEETTC-------CHHH
T ss_pred Hhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccc--ccccchhcccEEEEECchhhccCCcHHH
Confidence 7643 3355555554321 112347899999998854321110000 00012356789999999999765 3444
Q ss_pred HHHhh------------------ccccEEEEeee
Q 015196 165 VISLT------------------KSHCKLGLTAT 180 (411)
Q Consensus 165 ~~~~~------------------~~~~~i~lSAT 180 (411)
++..+ ...++++||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 33322 34579999998
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=2.7e-19 Score=172.64 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=76.9
Q ss_pred CCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCcc--------Cc
Q 015196 267 RGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP--------EA 333 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~--------~~ 333 (411)
.+.++||||++++.++.+++.|. ...+||+....++..+...++.+ .|+|||+++++|+|++ +.
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~VtVATdmAgRGtDI~lg~~V~~~Gg 549 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MVTIATNMAGRGTDIKLGPGVAELGG 549 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CEEEEETTTTTTCCCCCCTTTTTTTS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eEEEEcchhhCCcCccCCcchhhcCC
Confidence 47789999999999999999992 45788986666666666777776 6999999999999998 55
Q ss_pred cEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 334 NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 334 ~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
.+||.+..| .|...+.|++||+||.|.
T Consensus 550 lhVInte~P-es~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 550 LCIIGTERH-ESRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp CEEEESSCC-SSHHHHHHHHTTSSCSSC
T ss_pred CEEEecCCC-CCHHHHHHhhCccccCCC
Confidence 689988655 699999999999999996
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.83 E-value=5.9e-21 Score=164.78 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=108.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCC--
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~-- 95 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++....
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 479999999999999875 89999999999999977765432 3589999999999999999999886543
Q ss_pred --CCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----HHH
Q 015196 96 --DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRK 164 (411)
Q Consensus 96 --~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~----~~~ 164 (411)
...+..+.++... ......+|+|+|++.+.....+. .+....++++|+||||++.+.. ...
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--------ALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--------CCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC--------CCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 3455666554321 12245789999999775422110 1112467899999999987543 333
Q ss_pred HHHhhc-cccEEEEeeeccc
Q 015196 165 VISLTK-SHCKLGLTATLVR 183 (411)
Q Consensus 165 ~~~~~~-~~~~i~lSATp~~ 183 (411)
++..++ ..+++++|||+..
T Consensus 174 i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTSCTTCEEEEEESCCCG
T ss_pred HHHhCCcccEEEEEecCCCH
Confidence 444443 3479999999964
No 67
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.83 E-value=1.8e-20 Score=165.53 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=108.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---------------CCceEEEEcChhhHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~lil~P~~~l~~q~~~~~ 88 (411)
..|+|+|.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 369999999999998875 89999999999999987765321 248999999999999999999
Q ss_pred HHHhCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---
Q 015196 89 KLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (411)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~--- 160 (411)
.++.......+..+.++.. .......+|+|+|++.+.....+. .+....++++|+||||++.+.
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~ 192 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFE 192 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--------SBCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CCChhhCCEEEEeCHHHHHhCchH
Confidence 9986554455666655432 123356799999999775432110 112246689999999998754
Q ss_pred -hHHHHHHhh--c---cccEEEEeeeccc
Q 015196 161 -MFRKVISLT--K---SHCKLGLTATLVR 183 (411)
Q Consensus 161 -~~~~~~~~~--~---~~~~i~lSATp~~ 183 (411)
.+..++..+ . ..++++||||+.+
T Consensus 193 ~~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 193 PQIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 334444422 1 3468999999964
No 68
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=164.73 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=106.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh------------cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------------~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 379999999999998775 8999999999999998776532 3457999999999999999999997
Q ss_pred hCCCCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hH
Q 015196 92 STIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (411)
Q Consensus 92 ~~~~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~ 162 (411)
.. ....+..+.++.. ..+....+|+|+|++.+...... ..+...+++++|+||||++.+. .+
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 SY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp CC-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--------TCCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred cc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcCcccceEEEEECHHHHhccchHHHH
Confidence 52 3334555544322 12335679999999977542211 1111246789999999997754 34
Q ss_pred HHHHHhhc-cccEEEEeeeccc
Q 015196 163 RKVISLTK-SHCKLGLTATLVR 183 (411)
Q Consensus 163 ~~~~~~~~-~~~~i~lSATp~~ 183 (411)
..++..+. ..+++++|||+..
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCH
T ss_pred HHHHHhCCcCCeEEEEEeeCCH
Confidence 44444443 4578999999864
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.83 E-value=1.3e-20 Score=163.27 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=106.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++. .+ +.++||++|+++|+.||.+++.++......
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 379999999999998775 899999999999999666543 32 358999999999999999999998655455
Q ss_pred cEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHHHHhh
Q 015196 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLT 169 (411)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~~~~~ 169 (411)
.+..+.++... ......+|+|+|++.+.....+ ..+...+++++|+||||++.+..+ ..++..+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 66666654321 1123479999999977533211 011234678999999999865433 3344433
Q ss_pred c-cccEEEEeeeccc
Q 015196 170 K-SHCKLGLTATLVR 183 (411)
Q Consensus 170 ~-~~~~i~lSATp~~ 183 (411)
. ..++++||||+..
T Consensus 184 ~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 184 PPTTQVVLLSATMPN 198 (224)
T ss_dssp CTTCEEEEEESSCCH
T ss_pred CccCeEEEEEeecCH
Confidence 2 3478999999974
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=166.02 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=109.1
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 65 ~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 141 (249)
T 3ber_A 65 KPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQ 141 (249)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCee
Confidence 79999999999998775 89999999999999977765432 3479999999999999999999886544456
Q ss_pred EEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHHHHhh
Q 015196 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLT 169 (411)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~~~~~ 169 (411)
+..+.++... ......+|+|+|++.+.....+ ...+....++++|+||||++.+..+ ..++..+
T Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-------~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~ 214 (249)
T 3ber_A 142 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN-------TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI 214 (249)
T ss_dssp EEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHH-------STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-------CCCcCccccCEEEEcChhhhhccChHHHHHHHHHhC
Confidence 6666664321 2235689999999977532110 0111234678999999998876533 3344444
Q ss_pred c-cccEEEEeeeccc
Q 015196 170 K-SHCKLGLTATLVR 183 (411)
Q Consensus 170 ~-~~~~i~lSATp~~ 183 (411)
+ ..++++||||+..
T Consensus 215 ~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 215 PRDRKTFLFSATMTK 229 (249)
T ss_dssp CSSSEEEEEESSCCH
T ss_pred CCCCeEEEEeccCCH
Confidence 3 4578999999974
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.83 E-value=1.6e-20 Score=160.63 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=106.8
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c--------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~--------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
..|+|+|++++..++.+. ++++.+|||+|||++++.++.. + +.+++|++|+++|+.||.+++.++...
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 379999999999998865 8999999999999997776533 2 357999999999999999999998543
Q ss_pred CCCcEEEEcCchh-----hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHH----H
Q 015196 95 QDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (411)
Q Consensus 95 ~~~~v~~~~~~~~-----~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~----~ 165 (411)
..+..+.++.. .......+|+|+|++.+.....+ ..+....++++|+||||++.+..+.. +
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 99 --LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp --SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred --ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--------CCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 34555555432 12234689999999877432110 11223567899999999986554333 3
Q ss_pred HHhhc-cccEEEEeeeccc
Q 015196 166 ISLTK-SHCKLGLTATLVR 183 (411)
Q Consensus 166 ~~~~~-~~~~i~lSATp~~ 183 (411)
+..++ ..+++++|||+..
T Consensus 169 ~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHTSCTTSEEEEECSSCCH
T ss_pred HHhCCccCeEEEEEEecCH
Confidence 33332 4578999999964
No 72
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=168.16 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=109.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----------cCCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----------~~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.+.+++..
T Consensus 76 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGR---DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp BCCHHHHHHHHHHHHTC---CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 39999999999998875 8999999999999998776542 3568999999999999999999998765
Q ss_pred CCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhH----HHH
Q 015196 95 QDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKV 165 (411)
Q Consensus 95 ~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~----~~~ 165 (411)
....+..+.++... ......+|+|+|++.+....... ..+...++++||+||||++.+..+ ..+
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-------~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 225 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADRILDVGFEEELKQI 225 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-------TTCCCTTCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-------CCcccccCCEEEEcChHHHhhhhHHHHHHHH
Confidence 55566666664321 12245789999999774321100 011235678999999999776533 444
Q ss_pred HHhhc-cccEEEEeeeccc
Q 015196 166 ISLTK-SHCKLGLTATLVR 183 (411)
Q Consensus 166 ~~~~~-~~~~i~lSATp~~ 183 (411)
+..++ ..++++||||+.+
T Consensus 226 ~~~~~~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 226 IKLLPTRRQTMLFSATQTR 244 (262)
T ss_dssp HHHSCSSSEEEEECSSCCH
T ss_pred HHhCCCCCeEEEEEecCCH
Confidence 44443 3578999999974
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.82 E-value=8.7e-19 Score=170.82 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCCChhHHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 23 HAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.+.+||+|.+++.++. ..+ +++++.||||+|||++++.++...+.+++|++|+++|++|+.+++..+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 3689999999987653 333 489999999999999998888888899999999999999999998774
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=164.12 Aligned_cols=150 Identities=13% Similarity=0.048 Sum_probs=109.0
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----------cCCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----------~~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
..|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 479999999999998775 8999999999999997766532 246899999999999999999999865
Q ss_pred CCCCcEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch----hHHHH
Q 015196 94 IQDDQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKV 165 (411)
Q Consensus 94 ~~~~~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~----~~~~~ 165 (411)
.....+..+.++... ......+|+|+|++.+.....+. ..+...+++++|+||||++.+. .+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-------VSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-------CCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 444567776664321 12246899999999774321000 0122356789999999988654 34445
Q ss_pred HHhhc-cccEEEEeeeccc
Q 015196 166 ISLTK-SHCKLGLTATLVR 183 (411)
Q Consensus 166 ~~~~~-~~~~i~lSATp~~ 183 (411)
+..++ ..++++||||+..
T Consensus 196 ~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp HHTSCTTSEEEEEESSCCH
T ss_pred HHhCCCCCeEEEEEeeCCH
Confidence 55543 3468999999864
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.82 E-value=3.7e-20 Score=160.97 Aligned_cols=148 Identities=17% Similarity=0.073 Sum_probs=107.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH-Hhc-----CCceEEEEcChhhHHHHHHHHHHHhCCC-CC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~-~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~ 97 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++ ..+ +.++||++|+++|+.||.+++.++.... ..
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 122 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 122 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCc
Confidence 49999999999988765 89999999999999976654 332 3589999999999999999999986432 45
Q ss_pred cEEEEcCchhh----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh-HH----HHHHh
Q 015196 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-FR----KVISL 168 (411)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~-~~----~~~~~ 168 (411)
.+..+.++... ......+|+|+|++.+...... ..+...+++++|+||||++.+.. +. .++..
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 194 (230)
T 2oxc_A 123 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS 194 (230)
T ss_dssp CEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHh
Confidence 67777664321 1234689999999977543211 11112467899999999986542 33 34444
Q ss_pred hc-cccEEEEeeeccc
Q 015196 169 TK-SHCKLGLTATLVR 183 (411)
Q Consensus 169 ~~-~~~~i~lSATp~~ 183 (411)
++ ..+++++|||+..
T Consensus 195 ~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 195 LPASKQMLAVSATYPE 210 (230)
T ss_dssp SCSSCEEEEEESCCCH
T ss_pred CCCCCeEEEEEeccCH
Confidence 44 4578999999863
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.81 E-value=2.8e-20 Score=163.01 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=108.0
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-----------cCCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-----------~~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.+.++..
T Consensus 51 ~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 127 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 127 (242)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh
Confidence 59999999999998875 8999999999999998776532 245799999999999999999988765
Q ss_pred CCCCcEEEEcCchhh-----hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----HHH
Q 015196 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRK 164 (411)
Q Consensus 94 ~~~~~v~~~~~~~~~-----~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~----~~~ 164 (411)
.....+..+.++... .+....+|+|+|++.+.....+ ..+...+++++|+||||++.+.. +..
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 199 (242)
T 3fe2_A 128 ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--------GKTNLRRTTYLVLDEADRMLDMGFEPQIRK 199 (242)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSCCCTTCCEEEETTHHHHHHTTCHHHHHH
T ss_pred hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCCCcccccEEEEeCHHHHhhhCcHHHHHH
Confidence 444556666654321 2234579999999977543210 11123467899999999987643 344
Q ss_pred HHHhh-ccccEEEEeeeccc
Q 015196 165 VISLT-KSHCKLGLTATLVR 183 (411)
Q Consensus 165 ~~~~~-~~~~~i~lSATp~~ 183 (411)
++..+ ...++++||||+..
T Consensus 200 i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 200 IVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp HHTTSCSSCEEEEEESCCCH
T ss_pred HHHhCCccceEEEEEeecCH
Confidence 44444 33479999999864
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.81 E-value=2.7e-20 Score=162.54 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=104.6
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|+|+|++++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++.......
T Consensus 52 ~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 128 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT 128 (237)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCce
Confidence 49999999999998765 89999999999999977766432 3589999999999999999999986544445
Q ss_pred EEEEcCchhh-----hh-cCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchh----HHHHHHh
Q 015196 99 ICRFTSDSKE-----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISL 168 (411)
Q Consensus 99 v~~~~~~~~~-----~~-~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~----~~~~~~~ 168 (411)
+....++... .. .+..+|+|+|++.+.....+ ..+....+++||+||||++.+.. ...++..
T Consensus 129 ~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 129 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp EEEECC-------------CCCSEEEECHHHHHHHHHT--------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--------CCcCcccCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 5555553321 11 12378999999876432211 01123467899999999876543 3334444
Q ss_pred hc-cccEEEEeeeccc
Q 015196 169 TK-SHCKLGLTATLVR 183 (411)
Q Consensus 169 ~~-~~~~i~lSATp~~ 183 (411)
+. ..+++++|||+..
T Consensus 201 ~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 201 LNTSIQVVLLSATMPT 216 (237)
T ss_dssp SCTTCEEEEECSSCCH
T ss_pred CCCCCeEEEEEEecCH
Confidence 43 3578999999964
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=157.62 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=105.4
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-c------CCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~------~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.|+|+|.+++..++.+. ++++.+|||+|||++++.++.. + +.++||++|+++|+.|+.+++.+++.....
T Consensus 51 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGF 127 (245)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 59999999999998875 8999999999999997776532 2 347999999999999999999998655444
Q ss_pred cEEEEcCchhh------hhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCch---hHH----H
Q 015196 98 QICRFTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFR----K 164 (411)
Q Consensus 98 ~v~~~~~~~~~------~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~---~~~----~ 164 (411)
.+..+.++... ......+|+|+|++.+.....+.. ..+...+++++|+||||++.+. .+. .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 201 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP------PGIDLASVEWLVVDESDKLFEDGKTGFRDQLAS 201 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS------CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHH
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC------CCcccccCcEEEEeChHHhcccccccHHHHHHH
Confidence 55555443221 123457999999998754321110 0111246789999999998752 222 2
Q ss_pred HHHhh--ccccEEEEeeeccc
Q 015196 165 VISLT--KSHCKLGLTATLVR 183 (411)
Q Consensus 165 ~~~~~--~~~~~i~lSATp~~ 183 (411)
++..+ ...++++||||+..
T Consensus 202 i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 202 IFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp HHHHCCCTTCEEEEEESSCCH
T ss_pred HHHhcCCCCcEEEEEeccCCH
Confidence 22222 23478999999953
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=1.9e-18 Score=141.50 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=93.7
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
.|...+..+++... +.++||||++++.++.+++.| .+..+||+++..+|..+++.|+++ ..+|||+|++++
T Consensus 21 ~K~~~L~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~ 96 (163)
T 2hjv_A 21 NKFSLLKDVLMTEN---PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLVATDVAA 96 (163)
T ss_dssp GHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGGT
T ss_pred HHHHHHHHHHHhcC---CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEECChhh
Confidence 35566666665543 679999999999999999998 356899999999999999999998 999999999999
Q ss_pred cccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+|++++||+++.| .|...|+|++||++|.|+
T Consensus 97 ~Gld~~~~~~Vi~~~~p-~~~~~~~qr~GR~~R~g~ 131 (163)
T 2hjv_A 97 RGIDIENISLVINYDLP-LEKESYVHRTGRTGRAGN 131 (163)
T ss_dssp TTCCCSCCSEEEESSCC-SSHHHHHHHTTTSSCTTC
T ss_pred cCCchhcCCEEEEeCCC-CCHHHHHHhccccCcCCC
Confidence 99999999999998665 599999999999999985
No 80
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=2.2e-18 Score=152.48 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=100.7
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh----C--CceeeCCCCHHHHHHHHHHhcCCCCee-EEEeec
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R--KPMIYGATSHVERTKILQAFKCSRDLN-TIFLSK 322 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l----~--~~~i~g~~~~~~r~~~~~~f~~~~~~~-vlv~t~ 322 (411)
+.|+..+..++.... ..+.++||||++...++.+...| + +..+||.++..+|..+++.|++++.++ +|++|+
T Consensus 95 s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 95 SGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp CHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 447777777776553 35789999999999999888877 2 457899999999999999999975666 788899
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHH
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r 395 (411)
++++|+|++.++.||++++| +|+..+.|++||++|.|+ ...+.+|.+++.+|.|+.+.+..
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~-wnp~~~~Q~~gR~~R~Gq-----------~~~v~v~~li~~~TiEe~i~~~~ 234 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRW-WNPAVEDQATDRVYRIGQ-----------TRNVIVHKLISVGTLEEKIDQLL 234 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCC-SCTTTC-------------------------CCEEEEEEETTSHHHHHHHHH
T ss_pred hhcCCcCcccCCEEEEECCC-CChhHHHHHHHhccccCC-----------CCceEEEEEeeCCCHHHHHHHHH
Confidence 99999999999999999766 499999999999999995 44589999999999998887543
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.6e-18 Score=143.14 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=94.0
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
.|...+..+++... +.++||||++.+.++.+++.| .+..+||+++..+|..+++.|+++ ..+|||+|++++
T Consensus 17 ~K~~~L~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~ 92 (172)
T 1t5i_A 17 EKNRKLFDLLDVLE---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLFG 92 (172)
T ss_dssp GHHHHHHHHHHHSC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSCCS
T ss_pred HHHHHHHHHHHhCC---CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEECCchh
Confidence 45566666665543 679999999999999999998 356799999999999999999998 999999999999
Q ss_pred cccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+|++++||+++.| .|...|+|++||++|.|+
T Consensus 93 ~Gldi~~~~~Vi~~d~p-~~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 93 RGMDIERVNIAFNYDMP-EDSDTYLHRVARAGRFGT 127 (172)
T ss_dssp TTCCGGGCSEEEESSCC-SSHHHHHHHHHHHTGGGC
T ss_pred cCcchhhCCEEEEECCC-CCHHHHHHHhcccccCCC
Confidence 99999999999998666 599999999999999985
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=141.54 Aligned_cols=106 Identities=15% Similarity=0.233 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
|...+..+++.. .+.++||||++++.++.++..| .+..+||+++..+|..+++.|++| ..+|||+|+++++
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecchhc
Confidence 334455555433 3679999999999999999998 356899999999999999999998 9999999999999
Q ss_pred ccCccCccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 015196 327 SIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 327 Gid~~~~~~vi~~~~~~-----~s~~~~~Q~~GR~~R~~~ 361 (411)
|+|+|++++||.++.|+ .+...|+|++||++|.|+
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~ 136 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK 136 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCC
Confidence 99999999999986652 589999999999999884
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.76 E-value=6.5e-18 Score=144.41 Aligned_cols=109 Identities=21% Similarity=0.314 Sum_probs=96.4
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
....|...+..+++... +.++||||++++.++.+++.| .+..+||+++..+|..+++.|++| ..+|||||+
T Consensus 14 ~~~~k~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHHHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEEECT
T ss_pred CHHHHHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEEecC
Confidence 34557777777776554 779999999999999999988 366799999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||.++.| .|...|+|++||+||.|+
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~ 127 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLP-DRAEAYQHRSGRTGRAGR 127 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCC-SSHHHHHHHHTTBCCCC-
T ss_pred hhhcCCCCccCcEEEECCCC-cCHHHHHHHhcccCCCCC
Confidence 99999999999999998655 599999999999999985
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.76 E-value=3.3e-18 Score=140.40 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhC-----CceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCcc
Q 015196 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (411)
Q Consensus 252 k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~ 326 (411)
|...+..+++... +.++||||++.+.++.++..|. +..+||+++..+|..+++.|+++ ..+|||+|+++++
T Consensus 17 K~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 17 KYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHHHHTT---CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGGTT
T ss_pred HHHHHHHHHHhCC---CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcChhhc
Confidence 5566777776554 6799999999999999999983 56899999999999999999998 9999999999999
Q ss_pred ccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 327 Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
|+|+|++++||.++.| .|...|+|++||++|.|+
T Consensus 93 G~d~~~~~~Vi~~~~p-~~~~~~~qr~GR~gR~g~ 126 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLP-ANKENYIHRIGRGGRFGR 126 (165)
T ss_dssp TCCCCSCSEEEESSCC-SSGGGGGGSSCSCC----
T ss_pred CCCcccCCEEEEeCCC-CCHHHHHHHhcccccCCC
Confidence 9999999999998665 599999999999999984
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=141.06 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=79.6
Q ss_pred CcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCc
Q 015196 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (411)
Q Consensus 251 ~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~ 325 (411)
.|...+..+++... .+.++||||++++.++.+++.| .+..+||+++..+|..+++.|+++ +.+|||+|++++
T Consensus 31 ~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~ 107 (185)
T 2jgn_A 31 DKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVAA 107 (185)
T ss_dssp GHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEEEEC---
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEcChhh
Confidence 35556666665442 4678999999999999999998 356799999999999999999998 999999999999
Q ss_pred cccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 326 ~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
+|+|+|++++||.++.| .|...|+|++||++|.|+
T Consensus 108 ~Gldi~~~~~VI~~d~p-~s~~~~~Qr~GR~~R~g~ 142 (185)
T 2jgn_A 108 RGLDISNVKHVINFDLP-SDIEEYVHRIGRTGRVGN 142 (185)
T ss_dssp ---CCCSBSEEEESSCC-SSHHHHHHHHTTBCCTTS
T ss_pred cCCCcccCCEEEEeCCC-CCHHHHHHHccccCCCCC
Confidence 99999999999998665 599999999999999985
No 86
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.76 E-value=4.8e-16 Score=152.04 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCChhHHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEE
Q 015196 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~ 100 (411)
+.+||+|.+++.++. ..+ +++++.||||+|||++++.++...+.+++|++|+++|+.|+.+++..+.......+.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 579999999888764 333 489999999999999999988878889999999999999999999876433334444
Q ss_pred EEcC
Q 015196 101 RFTS 104 (411)
Q Consensus 101 ~~~~ 104 (411)
.+.|
T Consensus 80 ~l~g 83 (551)
T 3crv_A 80 FLVG 83 (551)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 4444
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=154.32 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=105.7
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-hcC-----CceEEEEcChhhHHHHHHHHHHHhCC-CC
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~~-----~~~lil~P~~~l~~q~~~~~~~~~~~-~~ 96 (411)
..|+++|.+++..++.+. .+++++.+|||+|||++++.++. ++. .++||++|+++|+.|+.+.+..+... +.
T Consensus 113 ~~pt~iQ~~ai~~il~~~-~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp CSCCHHHHHHHHHHTSSS-CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 368999999999998761 24899999999999999876653 332 37999999999999999999887653 23
Q ss_pred CcEEEEcCchh--hhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc-hhHHH----HHHhh
Q 015196 97 DQICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VISLT 169 (411)
Q Consensus 97 ~~v~~~~~~~~--~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~-~~~~~----~~~~~ 169 (411)
..+....++.. .......+|+|+|++.+.....+. ..+....+.++|+||||++.+ ..+.. +...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-------~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-------CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-------CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 45555554332 112345689999999774432110 011124678999999999875 33333 33333
Q ss_pred c-cccEEEEeeeccc
Q 015196 170 K-SHCKLGLTATLVR 183 (411)
Q Consensus 170 ~-~~~~i~lSATp~~ 183 (411)
. ..+++++|||+..
T Consensus 265 ~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 265 PRNCQMLLFSATFED 279 (300)
T ss_dssp CTTCEEEEEESCCCH
T ss_pred CCCCEEEEEeccCCH
Confidence 2 3479999999974
No 88
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=138.19 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=83.0
Q ss_pred CCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCccCccEEEEecCC
Q 015196 268 GDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~~~~~~vi~~~~~ 342 (411)
+.++||||++++.++.+++.| .+..+||+++..+|..+++.|+++ +.+|||+|+++++|+|+|++++||+++.|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~~Gldi~~v~~VI~~d~p 132 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLVATDVASKGLDFPAIQHVINYDMP 132 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEEECHHHHTTCCCCCCSEEEESSCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEEEcCchhcCCCcccCCEEEEeCCC
Confidence 568999999999999999998 356799999999999999999998 99999999999999999999999998665
Q ss_pred CCCHHHHHHHhhcccccCC
Q 015196 343 AGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 343 ~~s~~~~~Q~~GR~~R~~~ 361 (411)
.|...|+|++||++|.|+
T Consensus 133 -~~~~~~~qr~GR~gR~g~ 150 (191)
T 2p6n_A 133 -EEIENYVHRIGRTGCSGN 150 (191)
T ss_dssp -SSHHHHHHHHTTSCC---
T ss_pred -CCHHHHHHHhCccccCCC
Confidence 599999999999999985
No 89
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.70 E-value=5.9e-17 Score=144.97 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=93.7
Q ss_pred cCCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeec
Q 015196 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (411)
Q Consensus 248 ~~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~ 322 (411)
....|...+..+++... +.++||||++++.++.+++.| .+..+||+++..+|..+++.|++| ..+|||||+
T Consensus 11 ~~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLVaT~ 86 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLVATD 86 (300)
T ss_dssp CSSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEEECS
T ss_pred CHHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEec
Confidence 34557777888776654 789999999999999999998 356799999999999999999998 999999999
Q ss_pred cCccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 323 ~~~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++++|+|+|++++||.++.| .|...|+|++||+||.|.
T Consensus 87 va~~Gidi~~v~~VI~~d~p-~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMP-DRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCC-SSTTHHHHHHTCCC----
T ss_pred hhhcCccccceeEEEEcCCC-CCHHHHHHHccCcCcCCC
Confidence 99999999999999998655 599999999999999985
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.70 E-value=4.5e-16 Score=153.13 Aligned_cols=123 Identities=17% Similarity=0.062 Sum_probs=88.3
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|+|.|..++..++.+ + +..+.||+|||+++..++. ..+..++|++|+..|+.|....+..++......+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG----~-IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEG----K-IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTT----S-EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCC----c-eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 468999999999988765 3 8899999999999877762 2356899999999999997777776655444567
Q ss_pred EEEcCchhh---hhcCCCcEEEEecceecccCCCChhhHHHHHH-------HhcC---CccEEEEecCCCCC
Q 015196 100 CRFTSDSKE---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE-------IRNR---EWGLLLMDEVHVVP 158 (411)
Q Consensus 100 ~~~~~~~~~---~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~-------~~~~---~~~lvIiDE~H~~~ 158 (411)
+.+.++... ......+|+++|+..|... .+.+. +... ...++|+||+|.+.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfD--------yLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFD--------YLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHH--------HHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhH--------HHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 777665432 1123479999999876210 00011 1123 67899999999765
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.51 E-value=2.1e-18 Score=142.25 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=92.9
Q ss_pred CCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh-----CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeeccC
Q 015196 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (411)
Q Consensus 250 ~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~ 324 (411)
..|...+..+++... +.++||||++++.++.+++.| .+..+||+++..+|..+++.|++| +.+|||+|+++
T Consensus 15 ~~k~~~l~~ll~~~~---~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQPE---ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVA 90 (170)
Confidence 345555666665433 678999999999999999998 356799999999999999999998 99999999999
Q ss_pred ccccCccCccEEEEecCCCCCHHHHHHHhhcccccCC
Q 015196 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (411)
Q Consensus 325 ~~Gid~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~ 361 (411)
++|+|+|++++||+++.| .|...|+|++||++|.|+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p-~~~~~~~qr~GR~~R~g~ 126 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMP-RSGDTYLHRIGRTARAGR 126 (170)
Confidence 999999999999998655 599999999999999985
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.61 E-value=9.7e-15 Score=126.96 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=99.5
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cC----CceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~----~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.+.++++|.+++..+..+. .+++.+|||+|||.....++.. .+ .++++++|+++++.|..+.+...++.
T Consensus 59 ~~p~~~~q~~~i~~i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNS---VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred cCChHHHHHHHHHHHhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3568999999999998875 8999999999999765444322 12 27999999999999999998876653
Q ss_pred CC-CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC-ch-----hHHHHHH
Q 015196 95 QD-DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH-----MFRKVIS 167 (411)
Q Consensus 95 ~~-~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~-~~-----~~~~~~~ 167 (411)
.. ..++.-............+|+|+|++.+.... .. .-.++++||+||+|+.. .. ....+..
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l----------~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL----------EA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH----------HH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHH----------Hh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 32 22332111111111245789999998774321 11 23678899999999963 22 2233333
Q ss_pred hhccccEEEEeeeccc
Q 015196 168 LTKSHCKLGLTATLVR 183 (411)
Q Consensus 168 ~~~~~~~i~lSATp~~ 183 (411)
..+..+++++|||+..
T Consensus 205 ~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 205 AYPEVRIVLMSATIDT 220 (235)
T ss_dssp HCTTSEEEEEECSSCC
T ss_pred hCCCCeEEEEecCCCH
Confidence 3345689999999874
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.61 E-value=7.4e-08 Score=95.00 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHHh
Q 015196 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
+++||.|.+.+.++. ..+ +++++.||||+|||+.++.++.. .+.+++|++|++++..|+.+++..+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~--~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHS--SEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 678999999998763 223 48999999999999998776532 36899999999999999999988764
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.56 E-value=2e-07 Score=92.81 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
-.|.+.|++|+...+... .-++|.+|+|+|||.+.+.++.. .+.++|+++|+...++++...+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999988754 37899999999999987776643 4679999999999999998888653
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.52 E-value=7.3e-07 Score=86.98 Aligned_cols=128 Identities=12% Similarity=0.061 Sum_probs=85.8
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v 99 (411)
.+.|.+.|++++..++.+. ..++.+++|+|||.++..++. ..+.++++++|+...+....+.. +. ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~---~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~----~~---~a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHR---LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT----GR---TA 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCS---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH----TS---CE
T ss_pred cCCCCHHHHHHHHHHHhCC---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh----cc---cH
Confidence 5678999999999988654 889999999999998666543 44679999999998777655432 21 11
Q ss_pred EEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEee
Q 015196 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSA 179 (411)
..++.-.. ... +.+..... ....+++||+||++.+....+..++..+.....+.+.+
T Consensus 257 ~Tih~ll~--~~~---------~~~~~~~~------------~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 257 STVHRLLG--YGP---------QGFRHNHL------------EPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp EEHHHHTT--EET---------TEESCSSS------------SCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred HHHHHHHc--CCc---------chhhhhhc------------ccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEe
Confidence 11111100 000 01111100 12467899999999999888888888777666677777
Q ss_pred eccc
Q 015196 180 TLVR 183 (411)
Q Consensus 180 Tp~~ 183 (411)
-|..
T Consensus 314 D~~Q 317 (574)
T 3e1s_A 314 DTDQ 317 (574)
T ss_dssp CTTS
T ss_pred cccc
Confidence 6653
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.51 E-value=6e-07 Score=79.52 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=86.6
Q ss_pred CCCcHHHHHHHHHHhhhcCCCeEEEEecChhHHHHHHHHhCC-----ceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc
Q 015196 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (411)
Q Consensus 249 ~~~k~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~-----~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~ 323 (411)
.+.|+..+..|+.... ..+.+++||+++....+.+.+++.- .-+.|.....+ .+ -.+. ...+.+.|.+
T Consensus 107 ~SGKf~~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~-~~~i~Lltsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDF-SCTVHLFSSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CC-SEEEEEEESS
T ss_pred cCccHHHHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccC-CceEEEEECC
Confidence 5778899999997776 5788999999999999999999832 22456543322 11 1233 5555555777
Q ss_pred CccccC-----ccCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHH
Q 015196 324 GDNSID-----IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (411)
Q Consensus 324 ~~~Gid-----~~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 392 (411)
++-|+| ...++.||.+++.|......+|.+-|++|.+.+ +...+.+|.++..+|.|+-.-
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~g---------q~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKG---------LERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC------------------CCEEEEEETTSHHHHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccC---------CCCcceEEEEeCCCCHHHHHH
Confidence 777786 678899999977763344469999999999532 445799999999999996443
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.51 E-value=2.4e-06 Score=84.54 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..|.+.|.+|+..++... ..++.+|+|+|||.+...++.. .+.++++++|+...+++....+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~---~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCS---EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCC---CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999988654 7899999999999987766543 3569999999999999998888653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.6e-06 Score=86.30 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..|.+.|.+|+..++... ..+|.||+|+|||.++...+.. .+.++|+++|+...+++....+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRP---LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCS---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468999999999987653 7899999999999987666543 4679999999999999999888764
No 99
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.39 E-value=1.2e-06 Score=86.22 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH---h----cCCceEEEEcChhhHHHHHHHHHHHh---CCCC
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---R----IKKSCLCLATNAVSVDQWAFQFKLWS---TIQD 96 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~----~~~~~lil~P~~~l~~q~~~~~~~~~---~~~~ 96 (411)
.+.|++++..++.+. ..++.+++|+|||.++..++. . .+.++++++|+..++.+..+.+.... ++..
T Consensus 151 ~~~Q~~Ai~~~l~~~---~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBS---EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 688999999988764 889999999999977554432 2 23489999999999998877665432 2111
Q ss_pred CcEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEE
Q 015196 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (411)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~ 176 (411)
... .. ...-..|...+........... ........++++|+||++.+..+....++..++....+.
T Consensus 228 ~~~----~~--------~~~~~~Tih~ll~~~~~~~~~~--~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 228 EQK----KR--------IPEDASTLHRLLGAQPGSQRLR--HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 (608)
T ss_dssp CCC----CS--------CSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEE
T ss_pred HHH----hc--------cchhhhhhHhhhccCCCchHHH--hccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEE
Confidence 000 00 0000112221111000000000 000112367899999999777667777777776655566
Q ss_pred Eeeec
Q 015196 177 LTATL 181 (411)
Q Consensus 177 lSATp 181 (411)
|-+-+
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 66654
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.35 E-value=4.6e-06 Score=84.36 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
..|.+.|.+|+..++... ..++.+|+|+|||.+...++.. .+.++++++|+...+++....+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSS---EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCC---eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 468999999999988654 7899999999999987666543 3569999999999999988887653
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.29 E-value=3.1e-06 Score=80.67 Aligned_cols=134 Identities=12% Similarity=0.052 Sum_probs=80.7
Q ss_pred CCChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHhc---CC-ceEEEEcChhhHHHHHHHHHHHhCCCCCc
Q 015196 25 QPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KK-SCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~-~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 98 (411)
.|.+-|++++..++.. ......+|.|++|+|||.++...+..+ +. ++++++|+...+..+...+ +. .
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~---~ 97 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GK---E 97 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SS---C
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----cc---c
Confidence 6899999999987542 111388999999999999876665443 33 7999999988776655443 21 1
Q ss_pred EEEEcCchhhhhc-CCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEE
Q 015196 99 ICRFTSDSKERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177 (411)
Q Consensus 99 v~~~~~~~~~~~~-~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~l 177 (411)
+..+++-...... ......+.... . -....++++|+||+|.+....+..+...+.....+.+
T Consensus 98 ~~T~h~~~~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHSILKINPVTYEENVLFEQKE-----V------------PDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHHHHTEEEEECSSCEEEEECS-----C------------CCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEE
T ss_pred hhhHHHHhccCcccccccchhcccc-----c------------ccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEE
Confidence 1221111000000 00001111100 0 0024678999999999988887777776665556666
Q ss_pred eeecc
Q 015196 178 TATLV 182 (411)
Q Consensus 178 SATp~ 182 (411)
.|-+.
T Consensus 161 vGD~~ 165 (459)
T 3upu_A 161 IGDNK 165 (459)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 66554
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.01 E-value=6.9e-06 Score=76.32 Aligned_cols=109 Identities=11% Similarity=-0.024 Sum_probs=72.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEecce
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~~~ 123 (411)
+-.++.|++|+|||......+.. ++.++++|++++++.|.+.+.+. +.. .....-+.|+++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~aa~~l~~kl~~~-~~~----------------~~~~~~V~T~ds 222 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQAAEMIRRRANAS-GII----------------VATKDNVRTVDS 222 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHHHHHHHHHHHTTT-SCC----------------CCCTTTEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHHHHHHHHHhhhc-Ccc----------------ccccceEEEeHH
Confidence 34568899999999987665532 68899999999999999888542 110 011233678876
Q ss_pred ecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeecc
Q 015196 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (411)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~ 182 (411)
+...... ......+++|+||+-.+....+..++...+. ..+.+.|=|.
T Consensus 223 fL~~~~~----------~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~-~~vilvGD~~ 270 (446)
T 3vkw_A 223 FLMNYGK----------GARCQFKRLFIDEGLMLHTGCVNFLVEMSLC-DIAYVYGDTQ 270 (446)
T ss_dssp HHHTTTS----------SCCCCCSEEEEETGGGSCHHHHHHHHHHTTC-SEEEEEECTT
T ss_pred hhcCCCC----------CCCCcCCEEEEeCcccCCHHHHHHHHHhCCC-CEEEEecCcc
Confidence 5433210 0012378999999998887777666666555 4555555553
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.99 E-value=0.00018 Score=66.05 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=86.5
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-----cCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.+.|.|||+..+..+... +..++..+-+.|||.+++..+.. .+..+++++|+...+..+.+.+..+....+.
T Consensus 161 p~~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp ECCCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 378999999999887532 36788999999999986554322 2457999999998888777777765432111
Q ss_pred ----cEEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc--hhHHHHHHhhcc
Q 015196 98 ----QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS 171 (411)
Q Consensus 98 ----~v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~~~~~~~~~~~ 171 (411)
.+...+..... +..++.+.+.+.. ...+....++++|+||+|.... ..+..+...+..
T Consensus 238 ll~~~~~~~~~~~I~-f~nGs~i~~lsa~---------------~~slrG~~~~~viiDE~a~~~~~~el~~al~~~ls~ 301 (385)
T 2o0j_A 238 FLQPGIVEWNKGSIE-LDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISS 301 (385)
T ss_dssp TTSCCEEEECSSEEE-ETTSCEEEEEECS---------------HHHHHTSCCSEEEEESGGGSTTHHHHHHHHHHHHHS
T ss_pred hhhhhhccCCccEEE-eCCCCEEEEEECC---------------CCCccCCCCCEEEechhhhcCCCHHHHHHHHHHhhc
Confidence 11111111110 1112222222210 1233456788999999999985 455544444332
Q ss_pred --ccEEEEeeecccC
Q 015196 172 --HCKLGLTATLVRE 184 (411)
Q Consensus 172 --~~~i~lSATp~~~ 184 (411)
...+.+..||...
T Consensus 302 ~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 302 GRRSKIIITTTPNGL 316 (385)
T ss_dssp TTCCEEEEEECCCSS
T ss_pred CCCCcEEEEeCCCCc
Confidence 2456667788644
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.88 E-value=9.7e-05 Score=73.68 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~ 94 (411)
.|.+.|++++.. ..++.+|.|++|||||.+.+.-+.++ ..++|++++++..+.++...+.+..+.
T Consensus 9 ~Ln~~Q~~av~~-----~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVAA-----PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHTC-----CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHhC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 688999999972 12488999999999999976654332 158999999999999999999887653
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.81 E-value=0.00059 Score=67.01 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=87.1
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH-----hcCCceEEEEcChhhHHHHHHHHHHHhCCCCC
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 97 (411)
.+.|.|||+..+..+-.. +..++..+-|.|||.+++..+. ..+.++++++|+...+..+...+..+....+.
T Consensus 161 ~~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp BCCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 378999999999887332 4688899999999998654421 22358999999999888888888776543321
Q ss_pred c----EEEEcCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc--hhHHHHHHhhcc
Q 015196 98 Q----ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS 171 (411)
Q Consensus 98 ~----v~~~~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~--~~~~~~~~~~~~ 171 (411)
. ....+. ..|.+.+-..+..... + . ..+....++++|+||+|.... ..+..+...+..
T Consensus 238 ~~~~~~~~~~~---------~~i~~~nGs~i~~~s~---~-~---~~lrG~~~~~~iiDE~~~~~~~~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 238 FLQPGIVEWNK---------GSIELDNGSSIGAYAS---S-P---DAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISS 301 (592)
T ss_dssp TTSCCEEEECS---------SEEEETTSCEEEEEEC---C-H---HHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSS
T ss_pred hhccccccCCc---------cEEEecCCCEEEEEeC---C-C---CCccCCCcceEEEehhccCCchhHHHHHHHHHhcc
Confidence 1 111111 1122211111111110 0 1 222345688999999999987 455544444432
Q ss_pred --ccEEEEeeecccC
Q 015196 172 --HCKLGLTATLVRE 184 (411)
Q Consensus 172 --~~~i~lSATp~~~ 184 (411)
...+.+..||...
T Consensus 302 ~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 302 GRRSKIIITTTPNGL 316 (592)
T ss_dssp SSCCEEEEEECCCTT
T ss_pred CCCceEEEEeCCCCc
Confidence 2456677788654
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.61 E-value=0.00058 Score=61.97 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHH---hCC-CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 26 PRPYQEKSLSKMF---GNG-RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 26 l~~~Q~~ai~~~~---~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.|+|.++++.+. ..+ .++..++.+|+|+|||.++..++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 6899999988764 333 334578899999999999988877654
No 107
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.53 E-value=0.00037 Score=65.76 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 33 ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+...+..+...+.++++|+|+|||.++-.+...++..++-+.
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 3344454443457899999999999999888877766555444
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.47 E-value=0.0005 Score=56.46 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcCh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~ 78 (411)
-.++.+|+|+|||..++..+.+ .+.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4578899999999998877654 357899998874
No 109
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.44 E-value=0.00079 Score=55.03 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.-++.+.+.+...+......+.++.+|+|+|||.++..++..+
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3455565666555555445688999999999999987776654
No 110
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.0017 Score=53.22 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=31.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.-++.+.+.+...+........++.+|+|+|||.++-.++..+
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33466666666666655445688999999999999987776554
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.35 E-value=0.00042 Score=58.58 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~ 79 (411)
-.++.+++|+|||..++..+.+. +.+++++.|...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 45667999999999988887554 568999988763
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.35 E-value=0.0022 Score=57.78 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHhCCCCcce-EEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 25 QPRPYQEKSLSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~-ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
.-.+...+.+..++..+...+. ++.+|+|+|||.++-.++..++..++.+.+..
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 3455666666666665433344 55567999999999888888876666666543
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.32 E-value=0.0012 Score=54.90 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.3
Q ss_pred eEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
.++.+++|+|||..++..+.+ .+.+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 346799999999998888754 3679999998764
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.28 E-value=0.00096 Score=60.17 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=27.9
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..+.++.+|+|+|||.+|-.++..++..++.+.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 4578999999999999998888888777666643
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.24 E-value=0.0012 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=27.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcCh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~ 78 (411)
-.++.+|+|+|||..++..+.+. +.+++++.|.+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 45678999999999988887654 67999999874
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0011 Score=60.98 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHH-------------hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 27 RPYQEKSLSKMF-------------GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 27 ~~~Q~~ai~~~~-------------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
-+.|.+.+...+ .-.+++.+|+.+|+|+|||++|-+++.+++..++.+...
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 455777766542 223567899999999999999999999999888777654
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.17 E-value=0.00074 Score=52.91 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=20.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.++.+|+|+|||.+|-.+.....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 5899999999999998766654444
No 118
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.17 E-value=0.0022 Score=63.17 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCeEEEEecChhHHHHHHHHhCCce---eeCCCCHHHHHHHHHHhcCCCCeeEEEee--ccCccccCccCcc--EEEEec
Q 015196 268 GDKIIVFADNLFALTEYAMKLRKPM---IYGATSHVERTKILQAFKCSRDLNTIFLS--KVGDNSIDIPEAN--VIIQIS 340 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l~~~~---i~g~~~~~~r~~~~~~f~~~~~~~vlv~t--~~~~~Gid~~~~~--~vi~~~ 340 (411)
++.++||+.+...++.+.+.+. .+ ...+++..++..+++.|+ + .-.||+++ ..+.||+|+|+-. +||+..
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMKEYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEECCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchhccCCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 4569999999999999988875 11 122234567899999999 6 77899997 5899999998754 677764
Q ss_pred CCCCCH----------------------------HHHHHHhhcccccCCC
Q 015196 341 SHAGSR----------------------------RQEAQRLGRILRAKGK 362 (411)
Q Consensus 341 ~~~~s~----------------------------~~~~Q~~GR~~R~~~~ 362 (411)
-|+.++ ..+.|.+||+.|...+
T Consensus 525 lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D 574 (620)
T 4a15_A 525 LPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAED 574 (620)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCc
Confidence 333221 1237999999998753
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.0025 Score=58.90 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=32.6
Q ss_pred CCCCCChhHHHHHHHHH----hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 22 PHAQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~----~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+.-++.+.+.+...+ .+..+...++.+|+|+|||.++-.++..+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34555777777666544 33344578999999999999987776654
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.11 E-value=0.0065 Score=54.71 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=26.5
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
..+.++.+|+|+|||.++-.++..+ +.+++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3578999999999999987777655 566766653
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.10 E-value=0.0067 Score=49.35 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHH---hC---CCCcceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHH
Q 015196 27 RPYQEKSLSKMF---GN---GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWA 85 (411)
Q Consensus 27 ~~~Q~~ai~~~~---~~---~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~ 85 (411)
.+.|++++..+. .+ ......++.+|+|+|||..+..++..+ +..++++ +..++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~ 83 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLK 83 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHH
Confidence 467888887763 22 122478889999999999977765443 3355554 3344444433
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.08 E-value=0.0024 Score=56.01 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
....+.++.+|+|+|||.+|-.++...+..++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34467889999999999999888877776655553
No 123
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.06 E-value=0.0024 Score=59.19 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..+++|.+|+|+|||.+|-.++..++..++.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3588999999999999998888887766665544
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.0085 Score=50.24 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.-++...+.+...+......+.++.+|+|+|||.++..++..+
T Consensus 19 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33456666677777766544468999999999999987776543
No 125
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.03 E-value=0.0016 Score=59.48 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=27.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
..++++.+|+|+|||.+|-.++..++..++.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 457899999999999999988888876666554
No 126
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0015 Score=60.89 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+++.+|+.+|+|+|||++|-+++.+++..++.+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 356789999999999999999999999877777765
No 127
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.00 E-value=0.0018 Score=61.19 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhc-CCceEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCL 74 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~lil 74 (411)
.+++.++.+|+|+|||.+|-.++..+ +..++.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 34678999999999999998888887 4344433
No 128
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.00 E-value=0.00089 Score=66.98 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhCCC--
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~~~-- 95 (411)
.|.|-|++++... . ++.+|.|+.|||||.+...-+.++ ..++|+++.++..+.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~~--~---~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~ 76 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEA 76 (673)
T ss_dssp CCCHHHHHHHHCC--S---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTT
T ss_pred CCCHHHHHHHhCC--C---CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccc
Confidence 5789999999752 2 488999999999999866544321 2589999999999999999998875432
Q ss_pred -CCcEEEEcC
Q 015196 96 -DDQICRFTS 104 (411)
Q Consensus 96 -~~~v~~~~~ 104 (411)
...++.+++
T Consensus 77 ~~~~v~Tfhs 86 (673)
T 1uaa_A 77 RGLMISTFHT 86 (673)
T ss_dssp TTSEEEEHHH
T ss_pred cCCEEEeHHH
Confidence 234555444
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.001 Score=59.90 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=25.5
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc-CCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~lil~ 75 (411)
++..++.+|+|+|||.+|-.++..+ +..++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 4678999999999999998888877 44444443
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.99 E-value=0.0077 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=20.6
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...+.++.+|+|+|||.+|-.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33468999999999999987766544
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.98 E-value=0.0079 Score=55.49 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCCCChhHHHHHHHHHhC----CCCc--ceEEEcCCCCCHHHHHHHHHHhcC----CceEEEE
Q 015196 23 HAQPRPYQEKSLSKMFGN----GRAR--SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLA 75 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~----~~~~--~~ll~~~tG~GKT~~a~~~~~~~~----~~~lil~ 75 (411)
.+.-|+.+.+.+...+.. ..+. ..++.+|+|+|||.++-.++..+. ..++++.
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 345577777776665432 3334 688999999999999877776653 3455554
No 132
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.95 E-value=0.0019 Score=63.28 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=80.8
Q ss_pred CCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEc
Q 015196 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 103 (411)
..+...|++++..++... ....++.|+-|.|||..+-.++..+...++|.+|+.+-+.. +.++.+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~----l~~~~~~--------- 239 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDV----LAQFAGE--------- 239 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHH----HHHHHGG---------
T ss_pred CCCCHHHHHHHHHHHHhh-hCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHH----HHHHhhC---------
Confidence 467889999999987642 24678899999999977666677777788999999985553 2333221
Q ss_pred CchhhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCchhHHHHHHhhccccEEEEeeeccc
Q 015196 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (411)
Q Consensus 104 ~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~~~~~~~~~~~~~~~~i~lSATp~~ 183 (411)
.+-+..++.+ ... ....+++|||||=.+..+....++.. -..+.||.|-.-
T Consensus 240 -----------~i~~~~Pd~~-------------~~~--~~~~dlliVDEAAaIp~pll~~ll~~---~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 -----------KFRFIAPDAL-------------LAS--DEQADWLVVDEAAAIPAPLLHQLVSR---FPRTLLTTTVQG 290 (671)
T ss_dssp -----------GCCBCCHHHH-------------HHS--CCCCSEEEEETGGGSCHHHHHHHHTT---SSEEEEEEEBSS
T ss_pred -----------CeEEeCchhh-------------hhC--cccCCEEEEEchhcCCHHHHHHHHhh---CCeEEEEecCCc
Confidence 0112222211 111 24578999999999999988877663 235778888654
Q ss_pred Cc
Q 015196 184 ED 185 (411)
Q Consensus 184 ~~ 185 (411)
..
T Consensus 291 YE 292 (671)
T 2zpa_A 291 YE 292 (671)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 133
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.002 Score=59.55 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHH-------------hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 27 RPYQEKSLSKMF-------------GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 27 ~~~Q~~ai~~~~-------------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
-+.|.+.+...+ ....++.+|+.+|+|+|||++|-+++.+++..++.+..
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 456666665542 12356789999999999999999999999877777764
No 134
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0022 Score=59.77 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHH-------------hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 27 RPYQEKSLSKMF-------------GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 27 ~~~Q~~ai~~~~-------------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
-+.|.+.+...+ +-..++.+|+.+|+|+|||++|-+++.+++..++.+...
T Consensus 214 l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 455777776542 223567899999999999999999999998777777653
No 135
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.89 E-value=0.0082 Score=54.35 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHh-----CCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 26 l~~~Q~~ai~~~~~-----~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
-.+...+.+..++. .....++++.+|+|+|||.+|-.++..++..++.+
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34444555544432 23345889999999999999988877777665444
No 136
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.89 E-value=0.005 Score=51.13 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=25.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
-.++.+|.|+|||..++..+.+ .+.+++++.|.+.
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 4467899999999877766543 3578999999764
No 137
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.0012 Score=58.25 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHh-------------CCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 25 QPRPYQEKSLSKMFG-------------NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~-------------~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.-.+.+.+.+...+. ...+.+.++.+|+|+|||.++-.++..++..++.+..
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 345566666655431 1344678999999999999998888887766665543
No 138
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.0019 Score=50.61 Aligned_cols=24 Identities=8% Similarity=-0.231 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++++.+|+|+|||.+|-.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999987765543
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.84 E-value=0.016 Score=54.58 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=25.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P 76 (411)
..+.++.+|+|+|||.++-.+...+ +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4578999999999999987776544 456666543
No 140
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.80 E-value=0.012 Score=52.76 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=34.2
Q ss_pred CCCChhHHHHHHHHHh-----CCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 24 AQPRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~-----~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
+.-++...+.+...+. .......++.+|+|+|||.+|-.+...++..++++
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3345555555554432 22335899999999999999888877776555544
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.74 E-value=0.017 Score=49.10 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=30.6
Q ss_pred CCCChhHHHHHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.-++...+.+...+..+ .+...++.+|+|+|||.++-.++..+
T Consensus 25 ~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344666666666666543 22357899999999999987776554
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.73 E-value=0.0046 Score=56.53 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=28.0
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
....+++.+|+|+|||.+|-.++..++..++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 35688999999999999998888887766665544
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.011 Score=52.64 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH
Q 015196 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 33 ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
.+...+..+.....++.+|+|+|||.++..++.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344445544445788899999999998877665
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.64 E-value=0.012 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.++.+|+|+|||.+|-.+.....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5899999999999999877776654
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0088 Score=55.10 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHh----CCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~----~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+.-++.+.+.+...+. .......++.+|+|+|||.++-.++..+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34557777777776652 2345688999999999999987776655
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.02 Score=51.25 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-++...+.+..++..+...+.++.+|+|+|||.++-.++..+
T Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 355666666666655444468999999999999987777654
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.012 Score=52.65 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=31.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.-++...+.+...+..+...+.++.+|+|+|||.++..++..+
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456666667776766543458999999999999987776654
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.017 Score=55.63 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.9
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+..++.+|+|+|||.+|-.++..++..++.+-+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 3578999999999999999888888766666644
No 149
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.49 E-value=0.0045 Score=62.34 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-------CCceEEEEcChhhHHHHHHHHHHHhC
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~lil~P~~~l~~q~~~~~~~~~~ 93 (411)
.|.|.|++++... . .+.+|.|+.|||||.+...-+.++ ..++|+++.++..+.++.+++.+..+
T Consensus 11 ~Ln~~Q~~av~~~--~---g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--E---GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHCC--S---SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--C---CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 5889999998752 2 488999999999999866544322 24899999999999999888887654
No 150
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.48 E-value=0.01 Score=56.53 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+.++++.+|+|+|||.+|-.+...++..++.+.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 4567899999999999999888887776665554
No 151
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.45 E-value=0.0087 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=27.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
-.++.+++|+|||..++..+.+ .+.+++++-|.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 4466799999999988887654 3679999998774
No 152
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.42 E-value=0.0062 Score=49.82 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=25.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcCh
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNA 78 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~ 78 (411)
-.++.+|+|+|||.-.+..+. ..+.+++++.|..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 58 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc
Confidence 457789999999966555553 3467999999873
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.011 Score=54.29 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCCCChhHHHHHHHHHh----CCCCcceEEEcCCCCCHHHHHHHHHHhc------CCceEEEE
Q 015196 22 PHAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLA 75 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~----~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~ 75 (411)
..+.-|+.+.+.+...+. .......++.+|+|+|||.++-.++..+ +..++++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 345567778777777654 3344678999999999999987776554 44555554
No 154
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.21 E-value=0.034 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
+..++.+|+|+|||.++-.++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999888877764
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.016 Score=52.59 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+...+.+...+..+...+.++.+|+|+|||.++-.++..+
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33445556555655433468999999999999987776543
No 156
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.12 E-value=0.019 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..++++.+|+|+|||.+|-.+....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3589999999999999987776544
No 157
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.12 E-value=0.026 Score=57.97 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++...+.+..++......+.++.+|+|+|||.++-.++..+
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44444444444444444678999999999999987776554
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.04 E-value=0.0099 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...++.+|+|+|||.+|-.++..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368999999999999988777655
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.01 E-value=0.036 Score=50.70 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.-++...+.+...+..+. ++..++.+|+|+|||.++..++..+.
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 335566666666554432 33468999999999999887776654
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.01 E-value=0.014 Score=52.14 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++...+.+...+..+...+.++.+|+|+|||.++..++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 44444555554554433468999999999999988777654
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.008 Score=55.98 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=39.2
Q ss_pred CChhHHHHHHHHH-------------hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 26 PRPYQEKSLSKMF-------------GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 26 l~~~Q~~ai~~~~-------------~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
--+.|.+.+...+ +-.+++.+++.+|+|+|||++|-+++.+++..++.+...
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 3456766665431 123567899999999999999999999999888777653
No 162
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.80 E-value=0.027 Score=56.65 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.++.+|+.+|+|+|||++|-.++.+++..++.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4678899999999999999988888887666654
No 163
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.011 Score=54.98 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.3
Q ss_pred CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 41 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
.+++..++.+|+|+|||++|-+++.+++..++.+...
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 3567889999999999999999999998877777653
No 164
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.53 E-value=0.028 Score=46.05 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=27.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~ 78 (411)
...++..++|.|||.+|+..+.+ .+.+|+++--.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 47888999999999999888644 467899886444
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.52 E-value=0.028 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=18.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
...++.+|+|+|||..+-.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999987666543
No 166
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.50 E-value=0.014 Score=62.24 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=50.2
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
.+.+.+-|++++... + ++.+|.|+.|||||.+.+.-+..+ ..+++++++|+..+.++..++...+
T Consensus 8 ~~~~t~eQ~~~i~~~--~---~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--G---QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHCC--S---SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--C---CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 368999999998753 2 488999999999999976543221 1479999999999999988887653
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.45 E-value=0.092 Score=48.67 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCCCCChhHHHHHHHHH-h----C--CCCcceEE--EcCCCCCHHHHHHHHHHhc
Q 015196 22 PHAQPRPYQEKSLSKMF-G----N--GRARSGII--VLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~-~----~--~~~~~~ll--~~~tG~GKT~~a~~~~~~~ 67 (411)
..+.-|+.+.+.+...+ . + ......++ .+|+|+|||.++-.++..+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 44566888888887766 3 2 23356778 8999999999987776543
No 168
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.44 E-value=0.057 Score=54.67 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++.+.+.+..++......+.++.+|+|+|||.++-.++..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45555555555554445688999999999999987776543
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.34 E-value=0.14 Score=42.75 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
.++.++.++ ...-.++.+|+|+|||..+..++...+.+++++....
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 455555421 2235678999999999998777665567888887543
No 170
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.32 E-value=0.0085 Score=60.76 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=24.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
+.++.+|||+|||.+|-.+...++..++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 689999999999999988877776554444
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.24 E-value=0.031 Score=52.96 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchh----------------
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK---------------- 107 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~---------------- 107 (411)
.+..+.+.||+|||+++..++...++++|+|+|+...+.++..++..|++. .+..+.+...
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~~p~~~~~~~R 91 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSFSPHQDIISSR 91 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSSCCCHHHHHHH
T ss_pred CeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCcccccccccCCChHHHHHH
Confidence 367889999999999999999888899999999999999999999998542 2544443211
Q ss_pred -----hhhcCCCcEEEEecceeccc
Q 015196 108 -----ERFRGNAGVVVTTYNMVAFG 127 (411)
Q Consensus 108 -----~~~~~~~~I~v~t~~~l~~~ 127 (411)
.-..+...|+|+|...+...
T Consensus 92 l~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 92 LSTLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHHhCCCCEEEEEHHHHhhc
Confidence 00123456888888776543
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.12 Score=46.95 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=25.7
Q ss_pred hhHHHHHHHHH-hCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 28 PYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 28 ~~Q~~ai~~~~-~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+...+.+...+ ..+...+.++.+|+|+|||.++-.++..+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33344444444 43333348899999999999987766543
No 173
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.06 E-value=0.083 Score=46.74 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=58.7
Q ss_pred HHHHHHh----CC-CCcceEEEcCCCCCHHHHHHHHHHhc-----CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEE
Q 015196 33 SLSKMFG----NG-RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (411)
Q Consensus 33 ai~~~~~----~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~ 102 (411)
.++.++. ++ ++..+++.+|+|+|||..++.++... +.+++++....++... ...+ ++....
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~-lGvd~d----- 83 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRS-MGVDPE----- 83 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHH-TTCCGG-----
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHH-hCCCHH-----
Confidence 4556666 43 33456788999999999988776432 5789999877665432 2333 344322
Q ss_pred cCchhhhhcCCCcEEEEecceecccCCCChhhHHHHHH---HhcCCccEEEEecCCCCC
Q 015196 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE---IRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 103 ~~~~~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~---~~~~~~~lvIiDE~H~~~ 158 (411)
++++..+..+... .....+. +....+++||+|-+..+.
T Consensus 84 ------------~llv~~~~~~E~~------~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ------------RVIHTPVQSLEQL------RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ------------GEEEEECSBHHHH------HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ------------HeEEEcCCCHHHH------HHHHHHHHHHhhccCceEEEEecccccc
Confidence 2444444322110 0111222 345678999999998875
No 174
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.88 E-value=0.023 Score=50.32 Aligned_cols=35 Identities=14% Similarity=-0.067 Sum_probs=29.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+..+++++|+|+|||.+|-.++..++..++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 34577888999999999999999888888777764
No 175
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.55 E-value=0.023 Score=57.52 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
+.++.+|||+|||.+|-.+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988776654
No 176
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.54 E-value=0.022 Score=58.49 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++++.+|||+|||.+|-.+...+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999987776655
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.46 E-value=0.16 Score=43.04 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh--c-------CCceEEEEcCh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~--~-------~~~~lil~P~~ 78 (411)
.++.++.++ ...-+.+.+|+|+|||..+..++.. . ...++++....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 345555332 2246778999999999998877653 2 45677776543
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.38 E-value=0.42 Score=44.43 Aligned_cols=32 Identities=19% Similarity=0.021 Sum_probs=23.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...++.+++|+|||.++..++. ..+++++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4566779999999998766653 3466777766
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.23 E-value=0.053 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+.+.++.+|+|+|||.++-.++..++.+++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEech
Confidence 4578899999999999998888887766666554
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.17 E-value=0.033 Score=45.93 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCC-CcceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 31 ~~ai~~~~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
..++..++.+-+ ....++.+|+|+|||..+..++..+.+++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 444555555432 23577899999999999988877765544
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.08 E-value=0.37 Score=43.55 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 32 ~ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
..++.++. ++ ...-+++.+|+|+|||..++.++.. .+.+++++.....
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 35666666 32 2245778899999999998877643 4578888886543
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.96 E-value=0.32 Score=43.99 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHH
Q 015196 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD 82 (411)
Q Consensus 32 ~ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~ 82 (411)
..++.++. ++ ...-++|.+|+|+|||..++.++.. .+.+++++.....+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP 103 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence 45677776 33 2235677899999999998877644 4568888887655433
No 183
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.95 E-value=0.1 Score=46.21 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=27.5
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+.+.++.+|+|+|||.++-.++..++..++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4688999999999999998888877766665543
No 184
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.67 Score=43.14 Aligned_cols=33 Identities=15% Similarity=-0.024 Sum_probs=24.8
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
+...++.+++|+|||.++..++.. .+.+++++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345677899999999998776543 356787777
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.85 E-value=0.42 Score=43.31 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhh
Q 015196 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVS 80 (411)
Q Consensus 32 ~ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l 80 (411)
..++.++. ++ ...-.++.+++|+|||..++.++.. .+.+++++.....+
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 34566665 32 2345788899999999998887643 45689988865443
No 186
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.72 E-value=0.06 Score=49.16 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..+.++.+|+|+|||.+|-.++..++.+++.+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 4578999999999999998888888766666543
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.67 E-value=0.11 Score=43.93 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC---CceEEEE
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA 75 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~---~~~lil~ 75 (411)
.+.+..+.........++.+|+|+|||.++..++..+. .+++++.
T Consensus 40 ~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 40 IGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp HHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 33444444443446889999999999999877765432 4455543
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.59 E-value=0.34 Score=44.06 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=33.2
Q ss_pred HHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChh
Q 015196 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (411)
Q Consensus 33 ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~ 79 (411)
.++.++. ++ ...-.+|.+++|+|||..++.++.. .+.+++++.....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5566665 22 2245678899999999998877643 3578998886654
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.58 E-value=0.18 Score=45.62 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---------cCCceEEEEcChh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAV 79 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---------~~~~~lil~P~~~ 79 (411)
.++.++.++ ...-+++.+|+|+|||..++.++.. .+.+++++.....
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 355555432 2234678899999999998887754 2467888876543
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.41 E-value=0.088 Score=43.40 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
.+.++.+|+|+|||.++..++..+ +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 578999999999999987776544 44565554
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.057 Score=48.08 Aligned_cols=41 Identities=5% Similarity=-0.173 Sum_probs=29.4
Q ss_pred ChhHHHHHHHH----HhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKM----FGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~----~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|+-|.+.+... +.+..+.+.++.+|||+|||.++-.++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555433 344556688999999999999988887665
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.39 E-value=0.076 Score=47.08 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.....++.+|+|+|||.++-.++..++..++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 3457899999999999999888888876655543
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.37 E-value=0.44 Score=44.84 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHH
Q 015196 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 33 ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~ 88 (411)
.++.++.+- ...-+++.|++|+|||..++.++.. .+.+++++...-. ..|+..++
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 455555321 2235677899999999998777543 2458999886543 34555444
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.15 E-value=0.099 Score=46.09 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=26.3
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
....++.+|+|+|||.++-.++..++..++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 468899999999999999888877765555444
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.12 E-value=0.23 Score=42.76 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHHHHhCC-C-CcceEEEcCCCCCHHHHHHHHHHh
Q 015196 34 LSKMFGNG-R-ARSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 34 i~~~~~~~-~-~~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
+..++.+. + ....++.+|+|+|||+.+.+++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44455553 3 235778899999999998877753
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.06 E-value=0.5 Score=44.33 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEEcChhhHHHHHHHHH
Q 015196 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 33 ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
.++.++.+- +..-+++.|++|+|||..++.++.. .+.++++++.--. ..|+..++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 355555332 2235677899999999988776532 3568999886443 455555543
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.02 E-value=0.094 Score=45.18 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.1
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
+.+.++.+|+|+|||.++-.++..++..++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45789999999999999888877766555444
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.70 E-value=0.24 Score=41.62 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=29.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
...++.+|+|+|||..+..++. ..+.+++++..... ..+....+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHH
Confidence 3567889999999988766553 33568888775432 344444443
No 199
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.50 E-value=0.7 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...++.+|+|+|||.++-.++..+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 589999999999999988777655
No 200
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.37 E-value=0.13 Score=41.41 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=32.2
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.++.+++|||||..|..++.. +.++++++.....-.+|..++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 478999999999999988877 778999998665555666666655
No 201
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.35 E-value=0.14 Score=47.01 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=26.2
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
..+.++.+|+|+|||.+|-.++..++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 35789999999999999988888887665554
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.32 E-value=0.11 Score=46.17 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=24.4
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHh----cCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~ 75 (411)
..+.++.+|+|+|||.++..++.. .+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 358899999999999998776543 345666554
No 203
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.14 E-value=0.13 Score=44.45 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=23.9
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~l 72 (411)
+.+.++.+|+|+|||.+|-.++..++..++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 456889999999999999888877664443
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.95 E-value=0.47 Score=52.50 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=34.4
Q ss_pred HHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChh
Q 015196 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAV 79 (411)
Q Consensus 33 ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~ 79 (411)
.+..++. ++ ....+++.+|+|+|||.+|..++. ..+.+++++...-.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4666676 32 346889999999999999877754 34568888876544
No 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.94 E-value=0.16 Score=48.01 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.4
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~ 75 (411)
+++.++.+|+|+|||.+|..++..++ ..++.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 46799999999999999998888877 3444444
No 206
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.86 E-value=0.095 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..+|.+|||+|||-++..++.+++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 577899999999999999998876
No 207
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.49 E-value=0.22 Score=44.68 Aligned_cols=32 Identities=13% Similarity=-0.043 Sum_probs=26.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+.++.+|+|+|||.++-.+...++..+..+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 48999999999999999888877776655544
No 208
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.18 E-value=0.2 Score=40.55 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=22.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
...++.+++|+|||.++-.++.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 367889999999999999888887643
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.00 E-value=0.32 Score=46.06 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 27 ~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
++...+.+..++......+.++.+|+|+|||.++-.++..+
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555555555554444688999999999999988877654
No 210
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.95 E-value=0.24 Score=46.17 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
+++.++.+|+|+|||.++-.++..++..++.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 468999999999999999888888877666554
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.65 E-value=0.25 Score=46.65 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
+.++++.+|+|+|||.++-.++...+.+++.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 457899999999999998888877776666554
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.59 E-value=0.17 Score=44.63 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=21.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.+|.+|||+|||.++..++.+++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 567889999999999999988775
No 213
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.48 E-value=0.17 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.+|.+|||+|||.++..++..++
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 467789999999999999988775
No 214
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.43 E-value=0.29 Score=41.94 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
...++.+|+|+|||.++-.++...+...+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 45889999999999998877776665544443
No 215
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.23 E-value=0.36 Score=38.62 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=24.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
..++.+++|+|||.++-.+..+++..++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 567899999999999998888887555543
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.11 E-value=0.29 Score=42.57 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
+...++.+|+|+|||..+-.++...+...+.+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 34688999999999999877776665444444
No 217
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.00 E-value=0.39 Score=43.18 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..+.+...+..+...+.++.+|+|+|||.++..++..+
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33344444555433358999999999999988777654
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.95 E-value=0.58 Score=43.38 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 25 ~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
.+.+.+..++..++.. ...-.++.+|||||||.+.-.++..+ .++++++-
T Consensus 150 g~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 3455677788877642 22356789999999999866555433 24555543
No 219
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.95 E-value=0.25 Score=42.45 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
-.++.+|+|||||.+|..++.+++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 4578999999999999988887763
No 220
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.87 E-value=0.81 Score=40.85 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcChh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~~ 79 (411)
.++.++.++ ...-+++.+|+|+|||..++.++... +.+++++.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 345555432 22356789999999999988887543 467888876543
No 221
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.81 E-value=0.23 Score=50.04 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.++.+++.+|+|+|||++|-.++.+++..++.+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 4567899999999999999999998887666553
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.69 E-value=0.56 Score=39.76 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=32.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHH----hcCCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.-+++.+++|+|||..++.++. ..+.++++++-.-. .++....+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHH
Confidence 3567889999999998877653 34678888875443 5555555544
No 223
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.59 E-value=0.25 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+|||+|||.+|+.++.+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578899999999999999887654
No 224
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.18 E-value=1.5 Score=40.24 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHh---------cCCceEEEEcCh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNA 78 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~---------~~~~~lil~P~~ 78 (411)
.+..++.++ ...-+.|.+|+|+|||..+..++.. .+.+++++.-..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 344555332 2245678999999999998765422 134688887544
No 225
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.17 E-value=0.37 Score=39.53 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
...++.+++|+|||.++-.++..++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 478889999999999998888877644
No 226
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.10 E-value=0.26 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..+|.+|||+|||.++..++.+++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 577899999999999999988876
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.93 E-value=0.43 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
..+++.+|+|+|||.++-.++..+....+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 45889999999999998877776665554443
No 228
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.68 E-value=0.41 Score=38.85 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=21.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
+..+|.+|.|+|||.++-.++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 468899999999999877776665443
No 229
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.68 E-value=0.2 Score=44.39 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=24.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..++.+|+|+|||..+..++...+.+++++.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45889999999999998887665556666654
No 230
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.35 E-value=0.4 Score=37.97 Aligned_cols=25 Identities=24% Similarity=0.018 Sum_probs=21.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
..++.+++|+|||.++-.+..+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999998888877763
No 231
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.17 E-value=0.5 Score=50.03 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=59.0
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchh------------------
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK------------------ 107 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~------------------ 107 (411)
..+.+.||+|||++++.++...++++|+|+|+...+.++..+|..|+ +..+..+.+...
T Consensus 20 ~~l~G~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~el~~f~---~~~V~~fP~~~~~~y~~~~p~~~i~~~Rl~ 96 (1151)
T 2eyq_A 20 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLS 96 (1151)
T ss_dssp CCBCCCCTTHHHHHHHHHHHSSSSEEEEEESSHHHHHHHHHHHGGGC---SSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHHhhCCCEEEEeCCHHHHHHHHHHHHhhc---CCcEEEecccccCcccccCCChHHHHHHHH
Confidence 56789999999999998888778899999999999999999999985 234544443211
Q ss_pred --hhhc-CCCcEEEEecceeccc
Q 015196 108 --ERFR-GNAGVVVTTYNMVAFG 127 (411)
Q Consensus 108 --~~~~-~~~~I~v~t~~~l~~~ 127 (411)
..+. +..+|+|++...+...
T Consensus 97 ~L~~L~~~~~~viV~~~~al~~~ 119 (1151)
T 2eyq_A 97 TLYQLPTMQRGVLIVPVNTLMQR 119 (1151)
T ss_dssp HHHHGGGCCSEEEEEEHHHHTBB
T ss_pred HHHHHHhCCCCEEEEeHHHHhcc
Confidence 0111 2357999888877654
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.15 E-value=0.84 Score=38.56 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=32.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.-.++.+|+|+|||..++.++. ..+.+++++..... ..++...+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHH
Confidence 3668899999999999776653 34678888875443 4555555543
No 233
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.93 E-value=0.4 Score=38.03 Aligned_cols=25 Identities=20% Similarity=-0.028 Sum_probs=20.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
-.++.+++|||||.++-.+ ..++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 4678999999999998877 666544
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.87 E-value=0.83 Score=46.12 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-++...+.+..++......+.++.+|+|+|||.++-.++..+
T Consensus 184 G~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 184 GRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 355555555555554445689999999999999988877664
No 235
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.82 E-value=0.34 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.+|.+|||||||.++..++..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 467889999999999999888876
No 236
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=87.79 E-value=0.48 Score=38.96 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=17.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~ 65 (411)
-.++.+++|+|||..|...+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 568899999999999877643
No 237
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.74 E-value=0.62 Score=38.99 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=23.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
-+.++.+++|+|||.+|+..+.. .+.+++++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35788899999999998887643 355665443
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.69 E-value=0.49 Score=37.96 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
...++.+++|+|||.++-.+...++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 36889999999999998888877763
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=87.63 E-value=0.58 Score=44.47 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.4
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
+..++|.+|+|+|||.++-.++...+..++.+..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3568999999999999988877777656555543
No 240
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=87.49 E-value=5.5 Score=30.79 Aligned_cols=117 Identities=5% Similarity=-0.005 Sum_probs=73.1
Q ss_pred HHHHHHHhhhcCCCeEEEEecChhHHHHHHHHh----CCcee-eCCCCHHHHHHHHHHhcCCCCeeEEEeeccCccccCc
Q 015196 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKPMI-YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (411)
Q Consensus 256 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l----~~~~i-~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~~~~Gid~ 330 (411)
+..|++..- ..|.+++|.|.+.+.++.+-+.| .-.++ |+-..... . ....|+++++... ..
T Consensus 28 aCrL~~ka~-~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~-~~~PV~L~~~~~~---~~ 93 (150)
T 3sxu_A 28 VCEIAAERW-RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------R-GGAPVEIAWPQKR---SS 93 (150)
T ss_dssp HHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------T-TCCSEEEECTTSC---CC
T ss_pred HHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------C-CCCCEEEeCCCCC---CC
Confidence 334443332 35889999999999999999998 22233 43211100 1 1456888864211 12
Q ss_pred cCccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCcceeEEEEEeecCCchhHHHHHHHHHHHhhcCCceeEee
Q 015196 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVHH 410 (411)
Q Consensus 331 ~~~~~vi~~~~~~~s~~~~~Q~~GR~~R~~~~k~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~ 410 (411)
+..+++|++.... +. + .+ |. ..++.++..+......+|.|=+.+++.||..+.++
T Consensus 94 ~~~~vLinL~~~~--p~-~---~~---~f----------------~Rvie~v~~d~~~~~~AR~r~k~yr~~G~~l~~~~ 148 (150)
T 3sxu_A 94 SRRDILISLRTSF--AD-F---AT---AF----------------TEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTAT 148 (150)
T ss_dssp SCCSEEEECCSSC--CG-G---GG---GC----------------SEEEEEECSSGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCEEEECCCCC--Cc-c---cc---CC----------------CEEEEEeCCCHHHHHHHHHHHHHHHHCCCCcEEec
Confidence 3456888874331 11 1 11 11 22455888777788889999999999999999887
Q ss_pred C
Q 015196 411 V 411 (411)
Q Consensus 411 ~ 411 (411)
+
T Consensus 149 ~ 149 (150)
T 3sxu_A 149 W 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 241
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.47 E-value=0.55 Score=37.78 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
..++.+++|||||.++-.+...++-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 57889999999999998888877643
No 242
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.26 E-value=0.36 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
-.+|.+|||+|||.++..++..++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCC
Confidence 4678899999999999998887763
No 243
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.11 E-value=0.56 Score=37.11 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
...+|.+++|||||.++-.+..+++-.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3788999999999999988888777443
No 244
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.96 E-value=1.1 Score=42.74 Aligned_cols=46 Identities=15% Similarity=0.009 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEE
Q 015196 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (411)
Q Consensus 28 ~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~ 75 (411)
+.+...+...+..+ ...++.+|||||||.+.-.++.... .+++.+-
T Consensus 247 ~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 247 SGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 33444454445544 4689999999999988655554432 3444443
No 245
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.70 E-value=1.3 Score=39.74 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=39.2
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
.+--|+.+.+.+.. +.. ..++|.+|.|+|||..+..++......++++.-
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 45668888888888 665 378899999999999988887777666777653
No 246
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.64 E-value=0.53 Score=44.79 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.++.+|+|+|||.+|-.+...+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4899999999999999888877664
No 247
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.56 E-value=0.78 Score=41.12 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
....++.+|+|+|||.++-.++..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 35789999999999999888777666443
No 248
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.50 E-value=0.82 Score=42.72 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=29.0
Q ss_pred cceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcChhhHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD 82 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~~~l~~ 82 (411)
.++++.++||+|||.....++ ...+.+++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 488999999999999853333 344668888888777654
No 249
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.26 E-value=0.63 Score=38.58 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999888877775
No 250
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.07 E-value=0.63 Score=38.56 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=20.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
..++.+++|||||.++-.++.+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999998888777763
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.05 E-value=0.63 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
...++.+++|+|||.++-.+...++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35678899999999998888877763
No 252
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.04 E-value=0.59 Score=40.91 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=24.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.-.++.+|+|+|||.++-.++.++....+++.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34678899999999998888877754455554
No 253
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.95 E-value=0.69 Score=36.67 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
..++.+++|||||.++-.+...++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788999999999999888877763
No 254
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.84 E-value=0.66 Score=37.00 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.++..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578899999999999988887776
No 255
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.79 E-value=0.53 Score=42.35 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.++.+|+|+|||.+|-.+...+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4799999999999999888877665
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.74 E-value=2.6 Score=46.12 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=50.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEe
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t 120 (411)
..+++.+|+|+|||..++.++.. .+.+++++.-.-. .+|.. .+..+.... ++.+..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql~---A~~lGvd~~-----------------~L~i~~ 791 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY---ARKLGVDID-----------------NLLCSQ 791 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHHH---HHHTTCCGG-----------------GCEEEC
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHHH---HHHcCCChh-----------------heEEec
Confidence 46778899999999998887643 3568888875443 33332 232343211 123333
Q ss_pred cceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCC
Q 015196 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (411)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~ 158 (411)
...+... ............+++||+|+...+.
T Consensus 792 ~~~leei------~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 792 PDTGEQA------LEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp CSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred CCcHHHH------HHHHHHHHHccCCCEEEEechhhhc
Confidence 2222110 1111122224678999999999987
No 257
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.64 E-value=0.68 Score=37.56 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=21.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
...++.+++|||||.++-.+...++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788999999999998888877763
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.57 E-value=1.4 Score=39.06 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=35.9
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHHH
Q 015196 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 33 ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.++.++.+- +..-++|.|++|+|||..++.++.. .+.++++++.--. ..|+..++..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIV 117 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHH
Confidence 444555321 2235678899999999988777643 2468888885433 4555555543
No 259
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.39 E-value=0.78 Score=37.52 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
...++.+++|+|||.++-.+...++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 357788999999999988888777643
No 260
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.35 E-value=0.69 Score=37.44 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=20.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|||||.++-.+...++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999888777766
No 261
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.19 E-value=0.78 Score=38.19 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
...++.+++|||||.++-.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46788999999999999888887763
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.18 E-value=0.83 Score=36.20 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=20.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
....+.+++|||||.++-.+...++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678899999999999877776665
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.16 E-value=0.71 Score=38.66 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|||||.++-.++..++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678899999999999888887776
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.95 E-value=2 Score=38.12 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---------------C----CceEEEEcChhh-HHHHHHHHHH
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------------K----KSCLCLATNAVS-VDQWAFQFKL 90 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~----~~~lil~P~~~l-~~q~~~~~~~ 90 (411)
.++.++.++ ...-+++.+++|+|||..++.++... + .+++++.-...+ .++....+..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 455555432 22356788999999999988876531 2 578888765433 3444443433
No 265
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.95 E-value=0.83 Score=36.00 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
..++.+++|||||.++-.+...++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999988888777643
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.89 E-value=0.86 Score=37.31 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|+|||.++-.+...++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678899999999999888777765
No 267
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=84.88 E-value=2 Score=39.03 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=23.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC-ceEEEEcChhh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK-SCLCLATNAVS 80 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~-~~lil~P~~~l 80 (411)
..+++.+++|+||+.+|-.+-..... ..++.+...++
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~ 190 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI 190 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC
Confidence 47899999999999987665433321 12555544444
No 268
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.88 E-value=1.8 Score=43.67 Aligned_cols=72 Identities=11% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCeEEEEecChhHHHHHHHHh---------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc-CccccCccCccEEE
Q 015196 268 GDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV-GDNSIDIPEANVII 337 (411)
Q Consensus 268 ~~~~ivf~~~~~~~~~l~~~l---------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~-~~~Gid~~~~~~vi 337 (411)
+.++++.+++..-+.+..+.+ .+..++|+.+..++....+.+.+| ..+|+|+|.. +...+++.++.++|
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhhhhhccCCceEE
Confidence 678999999988777666554 345789999999999999999997 9999999854 45667888888888
Q ss_pred Eec
Q 015196 338 QIS 340 (411)
Q Consensus 338 ~~~ 340 (411)
+..
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 863
No 269
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.80 E-value=0.73 Score=37.22 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=20.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.+...++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999888887776
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.71 E-value=0.74 Score=37.00 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.+...++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999888877765
No 271
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.59 E-value=0.85 Score=41.20 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=23.1
Q ss_pred hHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 29 YQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 29 ~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
-|.+.++.+ +.+ ...-++..+.||+|||+++...
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G-~N~tifAYGQTGSGKTyTM~G~ 125 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDG-YNGTIMCYGQTGAGKTYTMMGA 125 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTT-CCEEEEEEESTTSSHHHHHTBC
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCCCccEEeCCc
Confidence 488777655 232 3334455699999999998753
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.56 E-value=0.76 Score=37.06 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=19.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
...++.+++|+|||.++-.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999998877776
No 273
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.40 E-value=0.83 Score=38.07 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+-.++.+|+||||+..+-.++.+++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4567789999999999988887775
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.38 E-value=0.68 Score=36.94 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=18.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~ 65 (411)
-.++.+++|||||.++-.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467889999999999877776
No 275
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=84.38 E-value=2.6 Score=38.54 Aligned_cols=41 Identities=17% Similarity=0.016 Sum_probs=26.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc--CCceEEEEcChhhHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQW 84 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil~P~~~l~~q~ 84 (411)
.++++.+++|+|||.+|-.+-... ...-++.+...++..+.
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~ 203 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI 203 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH
Confidence 578999999999999875543332 23445555555554443
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.30 E-value=0.81 Score=37.21 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=21.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.+..+++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678899999999999888887776
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.29 E-value=4.8 Score=44.81 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=56.0
Q ss_pred HHHHHHh-CC--CCcceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCch
Q 015196 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106 (411)
Q Consensus 33 ai~~~~~-~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~ 106 (411)
.++.++. ++ ...-+++.+|+|+|||..++.++... +.+++++.---.+. |.. .+.++.+...
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-~~~---a~~lGvd~~~-------- 437 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PIY---ARKLGVDIDN-------- 437 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-HHH---HHHTTCCTTT--------
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-HHH---HHHcCCCHHH--------
Confidence 4555565 21 23466788999999999988886543 46888887654432 222 2223443222
Q ss_pred hhhhcCCCcEEEEecceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc
Q 015196 107 KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (411)
Q Consensus 107 ~~~~~~~~~I~v~t~~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~ 159 (411)
+.+..+..+... ............+++||+|....+..
T Consensus 438 ---------L~I~~~~~~e~i------l~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 438 ---------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp ---------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---------eEEeCCCCHHHH------HHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 223322211110 11111222346789999999998873
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.28 E-value=0.68 Score=37.08 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~l 72 (411)
..++.+++|||||.++-.+..+++..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5778999999999999888888776544
No 279
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.17 E-value=0.66 Score=39.71 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
...++.+++|||||.++-.+...++..++++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 45678899999999998888877764444443
No 280
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.13 E-value=0.91 Score=38.22 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|+|||.++-.++.+++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678899999999999988888776
No 281
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.96 E-value=0.87 Score=37.72 Aligned_cols=24 Identities=17% Similarity=-0.056 Sum_probs=20.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999888887775
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.92 E-value=2.4 Score=37.96 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=36.0
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHH
Q 015196 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 33 ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~ 88 (411)
.++.++.+- +..-.++.|++|+|||..++.++.. .+.++++++.--. ..|...++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHH
Confidence 455555432 2235677899999999998777543 4678999886543 45555544
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.79 E-value=0.89 Score=37.57 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+|+||||+..|-.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 457889999999999988888775
No 284
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.75 E-value=2.3 Score=37.96 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=37.7
Q ss_pred CCCCChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 23 ~~~l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.+--|+.+.+.+...+..+ ..++|.+|.|+|||..+...+...+ ++++.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~ 61 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP--GILID 61 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS--EEEEE
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC--cEEEE
Confidence 4567888888888877643 4788999999999999888777664 55554
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.40 E-value=0.96 Score=38.42 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.4
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+...++.+|+|||||.++-.+..+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688899999999999888887775
No 286
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.31 E-value=0.8 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|||||.++-.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999988888776
No 287
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.31 E-value=1 Score=36.78 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=20.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|||||.++-.++..++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567889999999999888777765
No 288
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=83.13 E-value=0.94 Score=36.95 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
..++.+++|+|||.++-.+..+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 3578999999999999888887775
No 289
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.97 E-value=1.3 Score=38.12 Aligned_cols=31 Identities=23% Similarity=0.056 Sum_probs=22.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil 74 (411)
...++.+++|||||..+-.+... .+..++++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 35678899999999998887765 44444433
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.84 E-value=0.83 Score=36.82 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|+|||.++-.+..+++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999888877665
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.80 E-value=1.6 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCChh-HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPY-QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~-Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
++|+.| |..+++.+-.+. ...+.+|.|+|||...-.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge---~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNT---IVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCS---EEEEECCTTSSTTHHHHH
T ss_pred cccCCHhHHHHHHhccCCC---EEEEECCCCCCHHHHHHH
Confidence 455555 556777764443 778899999999987433
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.74 E-value=1.1 Score=36.14 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=21.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~li 73 (411)
...++.+|+|+|||.++-.++..++...+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~ 39 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVH 39 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEE
Confidence 357789999999999977776654433333
No 293
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.69 E-value=1.1 Score=41.23 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHH-------HhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM-------FGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~-------~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.+..+ +.+ ....++..+.||+|||+++..
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~G-~N~tifAYGqTGSGKTyTM~g 160 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLDG-YNVAIFAYGQTGSGKTFTMLN 160 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTT-CCEEEEEESCTTSSHHHHHHC
T ss_pred ECCCCchHHHHHHHHHHHHHHhCC-cceEEEEECCCCCCCceEeCC
Confidence 44556677777653 333 223445569999999999863
No 294
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=82.69 E-value=1.1 Score=39.92 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.++.+ +.+ ....++..+.||+|||+++...
T Consensus 52 f~~~~sQ~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyTm~G~ 98 (325)
T 1bg2_A 52 FQSSTSQEQVYNDCAKKIVKDVLEG-YNGTIFAYGQTSSGKTHTMEGK 98 (325)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTT-CCEEEEEECSTTSSHHHHHTBS
T ss_pred eCCCCCHHHHHHHHhhhhHHHHhCC-CeEEEEEECCCCCCCceEeccc
Confidence 44556688877664 232 3334555799999999998763
No 295
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.64 E-value=0.9 Score=37.86 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=21.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|+|||.++-.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999988888776
No 296
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.46 E-value=1.1 Score=40.57 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=26.7
Q ss_pred CCCChhHHHHHHHHH----h---CCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMF----G---NGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~----~---~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+..+. . .+....++..+.||+|||+++...
T Consensus 59 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 105 (365)
T 2y65_A 59 FKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGV 105 (365)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBS
T ss_pred ecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecC
Confidence 455667888887642 1 223334455799999999998653
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.33 E-value=1.2 Score=36.33 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
....+.+|.|+|||.++-.+...++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4677899999999999877766664
No 298
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.31 E-value=1.1 Score=40.30 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHH---Hh---CCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM---FG---NGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~---~~---~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++.+ +. .+...-++..+.||+|||+++..
T Consensus 60 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G 104 (347)
T 1f9v_A 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN 104 (347)
T ss_dssp ECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHHS
T ss_pred ECCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEeccC
Confidence 44566688888764 21 12223445579999999999864
No 299
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=82.20 E-value=0.87 Score=41.17 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+... +.++....++..+.||+|||+++...
T Consensus 58 f~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~ 105 (360)
T 1ry6_A 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS 105 (360)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBS
T ss_pred ecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecC
Confidence 44556688877653 22221122456799999999998764
No 300
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.05 E-value=1.3 Score=35.79 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.++.+|+|+|||.++-.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 457889999999999777665443
No 301
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=82.03 E-value=1.2 Score=47.43 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred eEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 46 GIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
-+|.|+.|||||.+.+.-+.++ ..++|++||... .-+...++...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhh
Confidence 4789999999999977655332 368999999764 444555665543
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.95 E-value=1.4 Score=35.62 Aligned_cols=27 Identities=22% Similarity=-0.029 Sum_probs=20.8
Q ss_pred eEEEcCCCCCHHHHHHHHHHhc---CCceE
Q 015196 46 GIIVLPCGAGKSLVGVSAACRI---KKSCL 72 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~---~~~~l 72 (411)
..+.++.|||||.++-.+...+ +-.++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5678999999999988887766 55554
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.95 E-value=4.5 Score=44.29 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHHhCCCCCcEEEEcCchhhhhcCCCcEEEEec
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I~v~t~ 121 (411)
.+.+.+|.|+|||.+++.+++ +.++.++++.+--++-..+ .+.+|++... ++++-|
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~----~~~~Gv~~~~-----------------l~~~~p 1491 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY----ARKLGVDIDN-----------------LLCSQP 1491 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH----HHHTTCCGGG-----------------CEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH----HHHcCCCHHH-----------------eEEeCC
Confidence 467889999999999888874 4568999999877766654 3334554322 334444
Q ss_pred ceecccCCCChhhHHHHHHHhcCCccEEEEecCCCCCc
Q 015196 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (411)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~~~~~~lvIiDE~H~~~~ 159 (411)
+.-.. -.......+....+++||+|.+-.+..
T Consensus 1492 ~~~e~------~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1492 DTGEQ------ALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp SSHHH------HHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred CcHHH------HHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 32211 112333445567899999999888764
No 304
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.93 E-value=1.1 Score=45.55 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 42 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
....++|.+|+|+|||.++-.++..++..++.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 3457899999999999998888777765554443
No 305
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.87 E-value=1.6 Score=39.98 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=27.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAV 79 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~ 79 (411)
.++++.++||+|||..+-.++. ..+.+++++=|..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4899999999999988655543 34567888877665
No 306
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.65 E-value=1.1 Score=40.44 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=25.9
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++.+ +.+ ....++..+.||+|||+++..
T Consensus 52 f~~~~tQ~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 52 FHGNETTKNVYEEIAAPIIDSAIQG-YNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp ECTTSCHHHHHHHTTHHHHHHHHTT-CCEEEEEEESTTSSHHHHHTB
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcC-CccceeeecCCCCCCCeEEec
Confidence 44566688887654 232 333455579999999999865
No 307
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.56 E-value=2 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
...++.+|+|+|||.++-.+...++....-+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 4688999999999999888777776544433
No 308
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=81.51 E-value=1.1 Score=40.37 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHH---Hh---CCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM---FG---NGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~---~~---~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++.+ +. .+...-.+..+.||+|||+++..
T Consensus 61 f~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g 105 (349)
T 3t0q_A 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN 105 (349)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHHS
T ss_pred ECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeCC
Confidence 44556688877764 21 12222344569999999999864
No 309
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.44 E-value=1.7 Score=49.75 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=33.8
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh--hhHHHHHHHHHHH
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA--VSVDQWAFQFKLW 91 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~--~l~~q~~~~~~~~ 91 (411)
+..++..+ +++++++|||+|||.++-..+.......++.++.. .-..+..+.+...
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH
Confidence 34445444 59999999999999998677666544333333222 2234455555543
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.38 E-value=1.1 Score=36.92 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=19.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.-.++.+|+|+|||.++-.++....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567889999999999877776553
No 311
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.30 E-value=2.1 Score=45.54 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=37.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHH-hc--------------CCceEEEEcChhhHHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC-RI--------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~-~~--------------~~~~lil~P~~~l~~q~~~~~~~~~ 92 (411)
+..+|.|+.|||||.+...-+. .+ -..+|+|+=|+..+.++..++...+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3669999999999998544322 11 1379999999999999888887654
No 312
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=81.25 E-value=1.3 Score=40.41 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCCChhHHHHHHHHHh-------CCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFG-------NGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~-------~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.+..... .+...-++..+.||+|||+++..
T Consensus 73 f~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG 118 (388)
T ss_dssp ECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTB
T ss_pred ecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeec
Confidence 4456679998876421 22333445579999999999865
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.18 E-value=1.3 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=19.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.++.|+|||.++-.+...++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC
Confidence 567889999999999777666554
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.16 E-value=1.8 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh----cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~----~~~~~lil~ 75 (411)
....+.+++|+|||.++..++.. .+++++++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999987666432 345777765
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.16 E-value=1.1 Score=35.99 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=18.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-..+.+|+|+|||.++-.+....
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 56788999999999876666543
No 316
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=81.07 E-value=1.1 Score=40.24 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGV 61 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~ 61 (411)
|.+..-|.+.++.+ +.+ ....++..+.||+|||+++.
T Consensus 69 f~~~~sQ~~Vy~~~~~plv~~~l~G-~N~tifAYGQTGSGKTyTM~ 113 (344)
T 3dc4_A 69 FPATISQDEMYQALILPLVDKLLEG-FQCTALAYGQTGTGKSYSMG 113 (344)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHHT-CCEEEEEESSTTSSHHHHHT
T ss_pred ECCCCCHHHHHHhhccchhhHhhCC-CceEEEEecCCCCCCCeEEc
Confidence 44566788888764 233 22344556999999999974
No 317
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.03 E-value=1.6 Score=35.09 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=19.0
Q ss_pred eEEEcCCCCCHHHHHHHHHHhc
Q 015196 46 GIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++.+++|||||.++-.+..++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999988887766
No 318
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=80.99 E-value=1.2 Score=37.12 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|||||.++-.+...++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999888887775
No 319
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=80.88 E-value=1.4 Score=39.80 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=26.1
Q ss_pred CCCChhHHHHHHHHH----h---CCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMF----G---NGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~----~---~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.+.... . .+....++..+.||+|||+++..
T Consensus 55 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 55 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred ECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 445567888887532 1 22333455579999999999865
No 320
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=80.72 E-value=1.1 Score=40.64 Aligned_cols=39 Identities=10% Similarity=-0.067 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+..+ +.+ ....++..+.||+|||+++...
T Consensus 76 f~~~~~Q~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyTM~G~ 122 (372)
T 3b6u_A 76 YDWNAKQFELYDETFRPLVDSVLQG-FNGTIFAYGQTGTGKTYTMEGI 122 (372)
T ss_dssp ECTTCCHHHHHHHTHHHHHHHHHTT-CCEEEEEEESTTSSHHHHHTBC
T ss_pred eCCcCchHHHHHHHHHHHHHHHhCC-CeeeEEeecCCCCCCCEeEecC
Confidence 44566788888763 232 3334455799999999998653
No 321
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=80.66 E-value=1.2 Score=40.14 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=25.9
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++.. +.+ ....++..+.||+|||+++..
T Consensus 64 f~~~~~Q~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyTm~G 109 (350)
T 2vvg_A 64 YDQTSCNYGIFQASFKPLIDAVLEG-FNSTIFAYGQTGAGKTWTMGG 109 (350)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTT-CCEEEEEECSTTSSHHHHHTB
T ss_pred ECCCcchhHHHHHHHHHHHHHHhCC-CceeEEeecCCCCCCCEEeec
Confidence 45566788888653 333 333455579999999999865
No 322
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.61 E-value=1.7 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=24.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hc-CCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RI-KKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~-~~~~lil~P 76 (411)
...++++++|+|||.++..++. .. +++++++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4566779999999999877653 33 678888773
No 323
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=80.60 E-value=1.5 Score=39.58 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=23.2
Q ss_pred hhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 28 PYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 28 ~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
.-|.+.+..+ +.+ ...-++..+.||+|||+++...
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G-~N~tIfAYGqTGSGKTyTM~G~ 124 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDG-YNGTIMCYGQTGAGKTYTMMGA 124 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTT-CCEEEEEEESTTSSHHHHHTBC
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CceEEEEECCCCCCCceEeccc
Confidence 3577777654 233 2234455699999999998653
No 324
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=80.55 E-value=1.4 Score=39.55 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHH----h---CCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMF----G---NGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~----~---~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++.+. . .+....++..+.||+|||+++..
T Consensus 58 f~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 103 (344)
T 4a14_A 58 LAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGE 103 (344)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC
T ss_pred EecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecc
Confidence 445566888887642 1 22323445569999999999754
No 325
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=80.48 E-value=1.3 Score=40.12 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=23.5
Q ss_pred hhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 28 PYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 28 ~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
.-|.+.+..+ +.+ ...-++..+.||+|||+++...
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G-~N~tifAYGqTGSGKTyTm~G~ 110 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEG-YNVCIFAYGQTGAGKSYTMMGK 110 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTT-CCEEEEEECSTTSSHHHHHTBC
T ss_pred CcHHHHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCCCceEeeCC
Confidence 4588777654 233 3334455699999999998653
No 326
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=80.30 E-value=0.78 Score=41.41 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHH----Hh---CCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM----FG---NGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~----~~---~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.++.+ +. .+...-++..+.||+|||+++...
T Consensus 80 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~ 126 (355)
T 3lre_A 80 FDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126 (355)
T ss_dssp ECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBC
T ss_pred ECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccC
Confidence 44556688887653 21 223334555699999999998653
No 327
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=80.26 E-value=1.6 Score=40.70 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=23.8
Q ss_pred hhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 28 PYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 28 ~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
.-|.+.++.+ +.+ ...-++..+.||+|||+++...
T Consensus 115 asQ~~Vy~~~~~plv~~~l~G-yN~tIfAYGQTGSGKTyTM~G~ 157 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEG-YHTCIFAYGQTGSGKSYTMMGT 157 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-CCEEEEEESSTTSSHHHHHTCC
T ss_pred CCHHHHHHhhhhhHHHHhhcC-CceEEEEeCCCCCCCCEEeecC
Confidence 4588877654 233 3334455699999999998653
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.17 E-value=1.4 Score=35.91 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=19.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+++|||||.++-.+...++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999888777655
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.12 E-value=1.4 Score=36.11 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+|+|+|||.++-.++..+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678899999999999877776653
No 330
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=80.05 E-value=1.6 Score=39.38 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=22.6
Q ss_pred hhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 28 PYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 28 ~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
.-|.+.+..+ +.+ ...-++..+.||+|||+++..
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G-~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDG-YNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-CCEEEEEEECTTSSHHHHHTB
T ss_pred ccHHHHHHHhhHHHHHHHhCC-ceeEEEeeCCCCCCCceEEec
Confidence 4587776554 333 223445569999999999865
No 331
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=80.03 E-value=1.2 Score=40.28 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHHh-------CCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKMFG-------NGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~~~-------~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+..+.. .+...-++..+.||+|||+++...
T Consensus 63 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~ 109 (359)
T 1x88_A 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 109 (359)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBC
T ss_pred EeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEecc
Confidence 4455668888776421 222234455699999999998753
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.01 E-value=1.1 Score=36.14 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..++.+++|+|||.++-.+..+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999888877664
No 333
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.00 E-value=1.8 Score=38.14 Aligned_cols=31 Identities=26% Similarity=0.070 Sum_probs=22.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
-..+.+++|+|||.++..++.. .+++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4567899999999987666533 356777665
No 334
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=79.72 E-value=1.4 Score=39.98 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCChhHHHHHHHH---Hh---CCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM---FG---NGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~---~~---~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.++.+ +. .+...-++..+.||+|||+++...
T Consensus 91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~ 136 (376)
T 2rep_A 91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGG 136 (376)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBC
T ss_pred cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecC
Confidence 44556688888764 11 123234455699999999998753
No 335
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.65 E-value=3.7 Score=35.50 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=29.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh--c-----------CCceEEEEcChhhHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR--I-----------KKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~--~-----------~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
.-++|.+|+|+|||..+..++.. . ..+++++...-. ..+....+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 36788999999999987666532 2 246777765443 3444444443
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.53 E-value=3.1 Score=34.52 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=24.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHH--hc-------CCceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC--RI-------KKSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~--~~-------~~~~lil~P~~ 78 (411)
.-..|.+|+|+|||..+..++. .. ...++++....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3567889999999998777654 22 34577776544
No 337
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.49 E-value=1.1 Score=41.10 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=25.4
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.+..+ +.+ ....++..+.||+|||+++..
T Consensus 129 F~~~~tQ~~Vy~~~~~plV~~~l~G-~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 129 FDETASNEVVYRFTARPLVQTIFEG-GKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTT-CEEEEEEEESTTSSHHHHHHC
T ss_pred EecCCChhhhhHHHHHHHHHHHhcC-CceeEEeecCCCCCCCeEeec
Confidence 44556688887653 333 223445569999999999876
No 338
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=79.45 E-value=2.4 Score=39.59 Aligned_cols=56 Identities=13% Similarity=-0.024 Sum_probs=34.7
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEcChhhHHHHHHHHH
Q 015196 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (411)
Q Consensus 33 ai~~~~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P~~~l~~q~~~~~~ 89 (411)
.++.++.+- +..-+++.|++|+|||..++.++.. .+.++++++.--. .+|+..++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHH
Confidence 345555332 2235678899999999998777543 2568888875432 344444443
No 339
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=78.95 E-value=1.9 Score=35.06 Aligned_cols=30 Identities=10% Similarity=-0.093 Sum_probs=23.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC-CceEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK-KSCLC 73 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~-~~~li 73 (411)
...++.++.|||||.++-.+..++. ..++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 3577899999999999988888773 33443
No 340
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.94 E-value=3 Score=37.53 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHHhc---------CCceEEEEcCh
Q 015196 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (411)
Q Consensus 33 ai~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~lil~P~~ 78 (411)
.++.++..+ ...-+.|.+|+|+|||..+..++... +++++++.-..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455555432 22356788999999999987776543 24667776543
No 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.91 E-value=2.1 Score=38.09 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=22.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...+.+++|+|||.++..++. ..+++++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999998766543 3456777775
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=78.66 E-value=1.4 Score=36.16 Aligned_cols=25 Identities=20% Similarity=-0.094 Sum_probs=21.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
..++.+++|||||.++-.+..+++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5678899999999998888877654
No 343
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.60 E-value=1.3 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.5
Q ss_pred cceEEEcCCCCCHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..+++.+|+|+|||.+.-.++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 467889999999998855443
No 344
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=78.56 E-value=1.4 Score=39.95 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+... +.+ ...-++..+.||+|||+++...
T Consensus 75 f~~~~~Q~~Vy~~~~~plv~~~l~G-~n~tifAYGqTGSGKTyTm~G~ 121 (373)
T 2wbe_C 75 FGPESKQCDVYSVVVSPLIEEVLNG-YNCTVFAYGQTGTGKTHTMVGN 121 (373)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHT-CCEEEEEECSTTSSHHHHHTBS
T ss_pred eccccchhHHHHHHHHHHHHHHhCC-ceEEEEeecCCCCCcceecccC
Confidence 44556688887754 233 2234555799999999998764
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.52 E-value=2.9 Score=39.70 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=25.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~P 76 (411)
...++++++|+|||.++..++..+ +.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356778999999999977776433 677888875
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.33 E-value=1.7 Score=35.48 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=18.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.-.+|.+|+|+|||.++-.++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 366789999999999877666544
No 347
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.59 E-value=1.4 Score=40.23 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=24.9
Q ss_pred CCCChhHHHHHHHH--------HhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~~--------~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.++.+ +.+ ...-++..+.||+|||+++...
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G-~N~tifAYGQTGSGKTyTM~G~ 155 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEG-GKATCFAYGQTGSGKTHTMGGD 155 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTT-CEEEEEEESCTTSSHHHHHC--
T ss_pred EecCCCceeehhhhHHHHHHHHhcC-CceEEEEecCCCCCCCeEeccC
Confidence 44556688887653 333 2234455699999999998764
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.53 E-value=2 Score=35.75 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+|+|||||.++-.+...++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999877776665
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.40 E-value=2.6 Score=33.57 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...+.++.|+|||.++-.+...+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56678999999999977766554
No 350
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.22 E-value=3 Score=48.54 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC--hhhHHHHHHHHHH
Q 015196 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN--AVSVDQWAFQFKL 90 (411)
Q Consensus 32 ~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~--~~l~~q~~~~~~~ 90 (411)
..+..++..+ .++++++|||+|||.++...+..+.+..++.++. .+-..+....+..
T Consensus 1295 ~ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~ 1353 (3245)
T 3vkg_A 1295 DVLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH 1353 (3245)
T ss_dssp HHHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh
Confidence 3445556554 5999999999999988766666665433333322 2224555555543
No 351
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.11 E-value=2.1 Score=38.12 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=24.2
Q ss_pred CCCChhHHHHHHH-------HHhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLSK-------MFGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~~-------~~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.++. ++.+ ...-++..+.||+|||+++..
T Consensus 56 f~~~~~Q~~Vy~~v~~lv~~~l~G-~n~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 56 FSPQASQQDVFQEVQALVTSCIDG-FNVCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTT-CCEEEEEESSTTSSHHHHHTB
T ss_pred eCCCCCcHhHHHHHHHHHHHHhCC-CEEEEEeECCCCCCCcEEEec
Confidence 3445557666643 3433 223445579999999999865
No 352
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.89 E-value=1.9 Score=34.66 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=17.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
-..|.+|.|+|||.++-.++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999986655543
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.79 E-value=3.6 Score=39.15 Aligned_cols=43 Identities=14% Similarity=-0.054 Sum_probs=30.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc----CCceEEEEcChhhHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~----~~~~lil~P~~~l~~q~~~~~ 88 (411)
-++|.+++|+|||..++.++... +.++++++---. ..|+..++
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 56778999999999988876442 458888886443 44555554
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.42 E-value=1.6 Score=39.40 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=20.5
Q ss_pred HHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 33 ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
.+..+.... ....++.+|||||||.+.-.++
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHH
Confidence 444444332 2367889999999998865554
No 355
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.33 E-value=2.3 Score=35.75 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=20.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+|+|+|||.++-.++.+++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 577889999999999888887776
No 356
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.30 E-value=2.6 Score=37.07 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=23.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~ 77 (411)
....|.+|+|+|||..+-.++....+.++..+|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q 160 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANH 160 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGT
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCceEEEEecC
Confidence 4677899999999988665554446666654443
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.29 E-value=2.3 Score=36.24 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=22.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~ 69 (411)
...+|.+++|+|||.++-.++..++-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47889999999999998888777763
No 358
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=76.22 E-value=3.6 Score=36.70 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=24.5
Q ss_pred cceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P 76 (411)
.-.++.+..|.|||.++..++ ++.+++++++--
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 345567889999999987765 445778888863
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=76.12 E-value=2.5 Score=34.31 Aligned_cols=23 Identities=26% Similarity=0.023 Sum_probs=19.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
....|.+++|||||.++-.+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35678899999999998777765
No 360
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=76.10 E-value=2.4 Score=34.61 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+++|||||.++-.+...++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 466789999999999888877776
No 361
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.92 E-value=2 Score=34.98 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=18.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
....+.+|+|||||.++-.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999977766554
No 362
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.75 E-value=1.3 Score=40.12 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=24.8
Q ss_pred CCCChhHHHHHHH-------HHhCCCCcceEEEcCCCCCHHHHHHHH
Q 015196 24 AQPRPYQEKSLSK-------MFGNGRARSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 24 ~~l~~~Q~~ai~~-------~~~~~~~~~~ll~~~tG~GKT~~a~~~ 63 (411)
|.+..-|.+.+.. ++.+. ...++..+.||+|||+++...
T Consensus 55 f~~~~~Q~~Vy~~~~~lv~~~l~G~-n~tifAYGqTGSGKTyTM~G~ 100 (369)
T 3cob_A 55 FDGNATQDDVFEDTKYLVQSAVDGY-NVCIFAYGQTGSGKTFTIYGA 100 (369)
T ss_dssp ECTTCCHHHHHHTTTHHHHHHHTTC-EEEEEEEECTTSSHHHHHTBC
T ss_pred ECCCCCcceehhhhhhhhHhhhcCC-ceEEEEECCCCCCCeEeecCC
Confidence 4455667777654 23332 223445699999999998653
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.70 E-value=2.3 Score=34.72 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=18.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.++.|||||.++-.+.. ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 457889999999999766654 54
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.67 E-value=2 Score=35.03 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
....+.+|.|+|||.++-.+...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999977766554
No 365
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=75.59 E-value=3.4 Score=36.92 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHhCCCCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcC
Q 015196 37 MFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATN 77 (411)
Q Consensus 37 ~~~~~~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~ 77 (411)
++......-.++.+.-|.|||.+++.++. ..+++++++---
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34433334556678899999999877753 446788887743
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.48 E-value=2.7 Score=38.04 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=22.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC--CceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~ 75 (411)
...++.+|||+|||.+.-.++.... ...+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 4788999999999998666654432 3455444
No 367
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.43 E-value=2.9 Score=36.50 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=24.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---c-CCceEEEEcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATN 77 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~-~~~~lil~P~ 77 (411)
.-++|.+|+|+|||..+..++.. . +.+++++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 46678999999999987665432 2 3478887654
No 368
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.41 E-value=1.9 Score=40.16 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=24.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
...++.+++|+|||.++..++..+ +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357788999999999877765443 46777776
No 369
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.05 E-value=4.4 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=24.1
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCceEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~li 73 (411)
....++.+|+|+|||..+-.++......++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3467889999999999977777666666555
No 370
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=75.00 E-value=1.9 Score=35.19 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=17.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
-..+.+|+|+|||.++-.+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5678899999999986665544
No 371
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.74 E-value=2.1 Score=34.97 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=17.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
....+.+|+|+|||.+.-.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3678899999999988655543
No 372
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.55 E-value=2.3 Score=36.05 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=20.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+|.|+|||..+-.++.+++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788899999999999877776654
No 373
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.53 E-value=1.5 Score=40.34 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=23.9
Q ss_pred CCCChhHHHHHH-------HHHhCCCCcceEEEcCCCCCHHHHHHH
Q 015196 24 AQPRPYQEKSLS-------KMFGNGRARSGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 24 ~~l~~~Q~~ai~-------~~~~~~~~~~~ll~~~tG~GKT~~a~~ 62 (411)
|.+..-|.+.+. .++.+. ...++..+.||+|||+++..
T Consensus 114 F~~~~~Q~~Vf~~v~plv~~~l~G~-n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 114 FHPLSSQSDIFEMVSPLIQSALDGY-NICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTC-CEEEEEESSTTSSHHHHHTE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCC-ceEEEEecCCCCCCeeEecC
Confidence 344555766654 334432 23445569999999999865
No 374
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=74.52 E-value=3.9 Score=36.77 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHhCCCCcceEEEcCCCCCHHHHHHHHH---H--hcCCceEEEEcC
Q 015196 36 KMFGNGRARSGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLATN 77 (411)
Q Consensus 36 ~~~~~~~~~~~ll~~~tG~GKT~~a~~~~---~--~~~~~~lil~P~ 77 (411)
.++.....+-.++.+.-|.|||.+++.++ + ..+++++++---
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 34444434456667889999999977764 4 566788888743
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.50 E-value=2.5 Score=34.46 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=18.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+++|||||.++-.+.. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 567899999999999777666 54
No 376
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=74.42 E-value=5.4 Score=34.93 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHh-------CCCCcceEEEcC-CCCCHHHHHHHHH---HhcCCceEEEE
Q 015196 27 RPYQEKSLSKMFG-------NGRARSGIIVLP-CGAGKSLVGVSAA---CRIKKSCLCLA 75 (411)
Q Consensus 27 ~~~Q~~ai~~~~~-------~~~~~~~ll~~~-tG~GKT~~a~~~~---~~~~~~~lil~ 75 (411)
...-.++++.+.. ....+...+.++ .|.|||.+++.++ +..+++++++=
T Consensus 81 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 81 ADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444567766521 122234445544 7999999987764 34577888875
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=74.17 E-value=3.2 Score=33.79 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=20.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil 74 (411)
-..+.++.|+|||.++-.+...+ +..++++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45678999999999876665433 4455544
No 378
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=74.17 E-value=8.1 Score=37.40 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=38.1
Q ss_pred CCCCCChhHHHHHHHHHhC--CCCcceEEEcCCCCCHHHHHHHHHHh-------cCCceEEEE
Q 015196 22 PHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLA 75 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~-------~~~~~lil~ 75 (411)
..+.-|+-..+.+...+.. ...+-+.|+++.|.|||..|..++.. ....++|+.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~ 186 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE
Confidence 3466788888888887752 22356788999999999998777532 223567765
No 379
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=73.89 E-value=2.4 Score=34.03 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc---CCceEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil 74 (411)
...++.+++|+|||.++-.+...+ +.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 356788999999999987776554 3345554
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.61 E-value=2.2 Score=34.90 Aligned_cols=24 Identities=13% Similarity=-0.129 Sum_probs=19.7
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...++.+++|||||.++-.+..++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356788999999999988777654
No 381
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.57 E-value=2.4 Score=33.67 Aligned_cols=31 Identities=10% Similarity=-0.182 Sum_probs=22.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil~ 75 (411)
...+.++.|+|||.++..++..+ +.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 56788999999999877766543 34565555
No 382
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=73.55 E-value=3.8 Score=36.93 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=24.6
Q ss_pred ceEEEcCCCCCHHHHHHHHH---H--hcCCceEEEEcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLATN 77 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~---~--~~~~~~lil~P~ 77 (411)
-.++.+..|.|||.+++.++ + +.+++++++-.-
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 45556889999999977763 4 567789888744
No 383
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=73.47 E-value=2.4 Score=36.07 Aligned_cols=25 Identities=16% Similarity=-0.120 Sum_probs=20.3
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
....|.+++|||||.++-.+...++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567889999999999887776665
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.35 E-value=2.1 Score=39.02 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---c-CCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~-~~~~lil~ 75 (411)
...++.+|||+|||.+.-.++.. . .++++++-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 46788999999999886555432 2 34555543
No 385
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=73.19 E-value=2.1 Score=41.69 Aligned_cols=24 Identities=17% Similarity=-0.052 Sum_probs=19.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
+.++.+|+|+|||.+|-.+...+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999998766655554
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.18 E-value=2.5 Score=34.66 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=19.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...++.++.|||||.++-.+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357788999999999988877654
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.02 E-value=2.9 Score=34.19 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=18.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...+.+++|+|||.++-.+...+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999999977766654
No 388
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=72.71 E-value=4 Score=33.76 Aligned_cols=28 Identities=7% Similarity=-0.066 Sum_probs=20.7
Q ss_pred EcCCCCCHHHHHHHHH---HhcCCceEEEEc
Q 015196 49 VLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (411)
Q Consensus 49 ~~~tG~GKT~~a~~~~---~~~~~~~lil~P 76 (411)
...+|+|||.+++.++ ++.+++++++=|
T Consensus 8 s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 8 GTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp ESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 3458999999987775 345678888644
No 389
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.52 E-value=1.9 Score=34.25 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.1
Q ss_pred ceEEEcCCCCCHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~ 62 (411)
-..+.+|.|||||..+-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999998665
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.29 E-value=1.1 Score=45.38 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.6
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
....++.+|+|+|||.++-.++..++..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568899999999999988887766543
No 391
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=72.27 E-value=3.6 Score=33.93 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...+.+++|+|||.++-.+...++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 577899999999999888877776
No 392
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.23 E-value=3.1 Score=36.45 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=23.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P 76 (411)
...+.+++|+|||.++..++. ..+++++++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 456679999999998766653 33667777763
No 393
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=71.70 E-value=3.9 Score=36.36 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=24.7
Q ss_pred ceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATN 77 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P~ 77 (411)
-+++.+..|.|||.+|+.++ ++.+++++++-.-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34556889999999987764 4457888888743
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.52 E-value=2.7 Score=33.44 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
...++.++.|+|||.+|+.++.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46788999999999999888864
No 395
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=71.36 E-value=2.9 Score=33.47 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
...+.+|.|+|||...-.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999865555443
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.30 E-value=3.4 Score=34.11 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=18.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...|.++.|||||.++-.+.. ++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-cC
Confidence 567889999999998766655 44
No 397
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.29 E-value=10 Score=32.36 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=36.4
Q ss_pred HHHHHHhCC-CCc-ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHHHHH
Q 015196 33 SLSKMFGNG-RAR-SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (411)
Q Consensus 33 ai~~~~~~~-~~~-~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~~ 91 (411)
.+..++.++ +.. ..++.+++|+|||..++..+. +.+.++++++-... ..+..+.+..+
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHHHHHHc
Confidence 456666553 222 345556888888876666543 44678998886433 66666666664
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=71.05 E-value=2.9 Score=35.57 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
....|.+|.|||||.++-.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999888887776
No 399
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=71.01 E-value=3.5 Score=33.74 Aligned_cols=25 Identities=16% Similarity=-0.019 Sum_probs=18.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
....|.+|.|||||.++-.+...++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566889999999998766555443
No 400
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=70.93 E-value=3.9 Score=34.24 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.+.-+.+++|||||..+-.++.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999988887776
No 401
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=70.84 E-value=8.4 Score=34.57 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=24.0
Q ss_pred ceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P 76 (411)
-+++.+..|.|||.+++.++ ++.+++++++--
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34556889999999987765 445788888873
No 402
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=70.82 E-value=4.8 Score=33.77 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=24.5
Q ss_pred cceEEEcCCCCCHHHHHHHHH---H-hcCCceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA---C-RIKKSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~---~-~~~~~~lil~P~~ 78 (411)
.-+.+.+|.|+|||..+..++ . ..+..++++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467789999999998865544 2 4456777776543
No 403
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=70.60 E-value=4.8 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=21.8
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
....+.+|+|+|||.++..++.. .++++++..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45677899999999886555432 245666654
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.43 E-value=4.6 Score=35.49 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=21.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
...+.+|+|+|||.+...++.. .++++++..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4568899999999986555432 345676664
No 405
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=70.29 E-value=2.7 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=17.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
....|.+|+|+|||..+-.+...
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45567899999999886555433
No 406
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=69.76 E-value=5.4 Score=38.78 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=25.5
Q ss_pred cceEEEcCCCCCHHHHHHHHH---HhcCCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~P 76 (411)
+-.++.+..|.|||.+++.++ ++.+++++++.-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 456677999999999987765 345788888874
No 407
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=69.67 E-value=4.2 Score=36.56 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=18.6
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.+.++.+++|+|||.++-.++..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 357889999999999976655433
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.34 E-value=5.7 Score=32.54 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=19.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...++.+++|+|||.++-.+...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567789999999999877765543
No 409
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=69.28 E-value=4.4 Score=33.12 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=23.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCce
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~ 71 (411)
-..+.++.|||||.++-.++.+++-.+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 466789999999999999999998553
No 410
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.20 E-value=4.5 Score=33.90 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...|.+++|+|||.++-.+...++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 567889999999999888777676
No 411
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=69.17 E-value=4.2 Score=34.22 Aligned_cols=32 Identities=13% Similarity=-0.139 Sum_probs=23.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P 76 (411)
..++.++.|+|||..+-.+...+....++..|
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~~~~~~Ep 35 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEP 35 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTTSEEECCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCeeeecc
Confidence 46778999999999988888877544333334
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.03 E-value=4.8 Score=37.26 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=22.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
...+.++.|+|||.++..++.. .+++++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 4567799999999987666533 356777776
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=68.99 E-value=3.5 Score=31.83 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.3
Q ss_pred ceEEEcCCCCCHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~ 63 (411)
-.++.+|+|+|||.+.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5688999999999884443
No 414
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.89 E-value=3 Score=37.19 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=22.1
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc--CCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~--~~~~lil~P 76 (411)
...++.+|+|+|||...-.++... ....+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 478899999999998755554433 234555443
No 415
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=68.80 E-value=5.2 Score=33.84 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=21.1
Q ss_pred ceEEEc-CCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVL-PCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~-~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
..+|.+ .||+|||.+++.++.. .+.++.++=
T Consensus 23 ~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 23 MLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 445554 4999999998887643 355666663
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=68.33 E-value=4.5 Score=35.27 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=19.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
..++.+++|||||.++-.+..++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999987777653
No 417
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.24 E-value=3.7 Score=32.66 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=17.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-.+|.+|+|+|||.+.-++..-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999865554433
No 418
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.19 E-value=11 Score=43.39 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCCCCChhHHHHHHHHHhC-CCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcCh
Q 015196 22 PHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~~~-~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~ 78 (411)
+.+..+|.=.+++..+... .-..++++.+|+|+|||.++-.++..++..++++-.+.
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e 680 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD 680 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS
T ss_pred CcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 4466778877777766321 11147899999999999999989988888777776443
No 419
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=67.94 E-value=3.3 Score=36.12 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=17.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-..|.+++|+|||.++-.+...+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999876655433
No 420
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=67.00 E-value=8.6 Score=36.86 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~ 75 (411)
.++++.++.-..-.+..+.++.|+|||.++..++.....-++|++
T Consensus 220 irvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~ 264 (600)
T 3vr4_A 220 QRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVYV 264 (600)
T ss_dssp CHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEEE
T ss_pred chhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEEE
Confidence 467777754323358999999999999998887766554444433
No 421
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=66.93 E-value=5.6 Score=33.72 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=23.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh--cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR--IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~--~~~~~lil~ 75 (411)
.+++.+..|+|||.++..++.. .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567899999999987766533 356777776
No 422
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.92 E-value=6.3 Score=35.04 Aligned_cols=32 Identities=22% Similarity=0.005 Sum_probs=21.9
Q ss_pred cceEEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
.-..+.+|+|+|||.+...++. ..++++++..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567789999999988655543 2345666664
No 423
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.88 E-value=4.3 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=20.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcCCceEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~li 73 (411)
.-..|.+|+|+|||.++-.++....+.+.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 467789999999998865554333234433
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.85 E-value=6.1 Score=34.51 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=22.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...+.++.|+|||.++..++. ..+++++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 455679999999988766543 3456777765
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=66.74 E-value=4.3 Score=35.18 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=18.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
...|.+++|||||.++-.+. .++
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC
Confidence 46788999999999977666 454
No 426
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.54 E-value=5.9 Score=35.74 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=21.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh---cCCceEEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~ 75 (411)
...+.+|+|+|||.+...++.. .++++++..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4568899999999986555432 245676664
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=66.44 E-value=12 Score=32.90 Aligned_cols=23 Identities=17% Similarity=-0.057 Sum_probs=17.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
.-..|.+|.|+|||.++-.+...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999987665543
No 428
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=66.43 E-value=5.4 Score=33.34 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=21.4
Q ss_pred ceEEEcC-CCCCHHHHHHHHHHh---cCCceEEEEc
Q 015196 45 SGIIVLP-CGAGKSLVGVSAACR---IKKSCLCLAT 76 (411)
Q Consensus 45 ~~ll~~~-tG~GKT~~a~~~~~~---~~~~~lil~P 76 (411)
..++.+. ||+|||.+++.++.. .+.++.++=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 4555544 899999998887643 3556666533
No 429
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=66.39 E-value=5.5 Score=33.16 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=20.8
Q ss_pred EcCCCCCHHHHHHHHHH---hcCCceEEEEc
Q 015196 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLAT 76 (411)
Q Consensus 49 ~~~tG~GKT~~a~~~~~---~~~~~~lil~P 76 (411)
....|.|||.+++.++. +.+++++++=.
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46689999999877753 34678888764
No 430
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=66.25 E-value=6.3 Score=33.48 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=21.6
Q ss_pred EEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
+.....|+|||.+++.++. +.+++++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4457789999999877753 4467888875
No 431
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=65.80 E-value=6.7 Score=34.74 Aligned_cols=23 Identities=17% Similarity=-0.034 Sum_probs=16.9
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-..+.+|+|||||.++-.+...+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35577999999999876654433
No 432
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=65.64 E-value=14 Score=33.13 Aligned_cols=33 Identities=21% Similarity=0.009 Sum_probs=24.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh---cCCceEEEEc
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~---~~~~~lil~P 76 (411)
..+.+.+++|+|||.++..++.. .+.++.++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 46778899999999987666543 3567766653
No 433
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=65.62 E-value=5.6 Score=33.91 Aligned_cols=27 Identities=33% Similarity=0.176 Sum_probs=20.1
Q ss_pred EcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 49 ~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
....|.|||.+++.++. +.+++++++=
T Consensus 25 s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 25 SGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999877653 4467888765
No 434
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=65.57 E-value=5.8 Score=34.16 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHh-----C--CCCcceEEEc-CCCCCHHHHHHHHH---HhcCCceEEEE
Q 015196 26 PRPYQEKSLSKMFG-----N--GRARSGIIVL-PCGAGKSLVGVSAA---CRIKKSCLCLA 75 (411)
Q Consensus 26 l~~~Q~~ai~~~~~-----~--~~~~~~ll~~-~tG~GKT~~a~~~~---~~~~~~~lil~ 75 (411)
+...-.|+++.+.. . ...+...+.+ ..|.|||.+++.++ ++.+++++++=
T Consensus 58 ~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 58 PKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp TTSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34455677766521 1 2223344444 47999999987764 44577888774
No 435
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=65.49 E-value=8.7 Score=33.37 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.7
Q ss_pred cCCCCCHHHHHHHHHH---hcCCceEEE
Q 015196 50 LPCGAGKSLVGVSAAC---RIKKSCLCL 74 (411)
Q Consensus 50 ~~tG~GKT~~a~~~~~---~~~~~~lil 74 (411)
..-|+|||.+++.++. +.+++++++
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 4789999999877653 446788775
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=65.18 E-value=7.5 Score=31.99 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
|.+.+...+........++.+..|+|||.....++...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44444444443334567888999999999877776543
No 437
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=64.69 E-value=6.9 Score=33.99 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHh-----C--CCCcceEEE-cCCCCCHHHHHHHHH---HhcCCceEEEE
Q 015196 26 PRPYQEKSLSKMFG-----N--GRARSGIIV-LPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (411)
Q Consensus 26 l~~~Q~~ai~~~~~-----~--~~~~~~ll~-~~tG~GKT~~a~~~~---~~~~~~~lil~ 75 (411)
+...-.|+++.+.. . ...+...+. +..|.|||.+++.++ ++.+++++++=
T Consensus 68 p~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 68 PTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 44555677766521 1 122333344 557999999987765 34567888874
No 438
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=64.58 E-value=6.1 Score=33.41 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEcCCCCCHHHHHHHHH---HhcCCceEEEE
Q 015196 48 IVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~---~~~~~~~lil~ 75 (411)
.....|+|||.+++.++ ++.+++++++=
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999999987765 34567888765
No 439
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=64.49 E-value=2 Score=35.21 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=18.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcC
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.++.++.|||||..+-.++..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56889999999999877766654
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=64.07 E-value=4.7 Score=33.69 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=19.5
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-.++.++.|+|||..+-.+...+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566789999999999877776654
No 441
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.72 E-value=4.5 Score=38.44 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=16.9
Q ss_pred cceEEEcCCCCCHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~ 64 (411)
.+.++.++||||||...-.++
T Consensus 168 pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998754443
No 442
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=63.65 E-value=7 Score=35.64 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
+-..=..+++.++.-.......+.+|+|+|||.++..++.
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 3344456666665433335899999999999999765543
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.62 E-value=2.8 Score=34.98 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=12.3
Q ss_pred ceEEEcCCCCCHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~ 64 (411)
-..|.+|+|+|||.++-.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56788999999998866555
No 444
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=63.52 E-value=2.4 Score=33.76 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=16.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~ 65 (411)
...+.+++|+|||.++-.++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567889999999988766653
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.44 E-value=5 Score=31.92 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=17.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
-..+.++.|+|||.....++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5678899999999886665543
No 446
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=63.32 E-value=11 Score=31.74 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=31.7
Q ss_pred eEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhhHHHHHHHHHH
Q 015196 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 90 (411)
..+.++.|||||.++-.+..+++ +-++.|...+.+++...|..
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g--~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CeEEecChHHHHHHHHHccc
Confidence 46789999999999877766655 33577777777777766653
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=63.30 E-value=7.4 Score=32.20 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=24.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCce-EEEEc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSC-LCLAT 76 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~-lil~P 76 (411)
-.++.++.|+|||..+-.+...+...+ ++--|
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep 39 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP 39 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEEec
Confidence 566789999999999888888777543 33345
No 448
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=63.20 E-value=5.8 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=20.0
Q ss_pred cCCCCCHHHHHHHHHH---hcCCceEEEEc
Q 015196 50 LPCGAGKSLVGVSAAC---RIKKSCLCLAT 76 (411)
Q Consensus 50 ~~tG~GKT~~a~~~~~---~~~~~~lil~P 76 (411)
...|+|||.+++.++. +.+++++++=.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 5688999999877753 44678877753
No 449
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=63.12 E-value=6.2 Score=32.39 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=23.0
Q ss_pred CcceEEEcCCCCCHHHHHHHHHHhcC--CceEEEE
Q 015196 43 ARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (411)
Q Consensus 43 ~~~~ll~~~tG~GKT~~a~~~~~~~~--~~~lil~ 75 (411)
....++.+++|+|||.....++..+. .++.++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 35778899999999988766665432 3455444
No 450
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=63.10 E-value=4.6 Score=38.80 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=23.5
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhc------CCceEEEEcCh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNA 78 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~------~~~~lil~P~~ 78 (411)
.+.++.+.||||||...-.++..+ ..--+|++..+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 488999999999998865554322 12345566555
No 451
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=62.97 E-value=8.3 Score=33.70 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=23.0
Q ss_pred cceEEEcCCCCCHHHHHHHHH---HhcCCceEEEE
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~---~~~~~~~lil~ 75 (411)
+...+.+.-|+|||.+++.++ ++.+++|+++=
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344555889999999987765 34567777774
No 452
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=62.76 E-value=6.8 Score=38.76 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..+.........++.+..|+|||..+=.++
T Consensus 82 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 82 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3566667665555688999999999998854443
No 453
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.26 E-value=5.1 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=17.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-..|.+|.|+|||.+.-.++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67789999999998865554433
No 454
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=62.10 E-value=6.7 Score=40.76 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
=..|+..+........+++.+..|+|||..+=.++
T Consensus 131 A~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 131 ADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 45667777766556789999999999998865444
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=61.85 E-value=4.8 Score=37.22 Aligned_cols=25 Identities=24% Similarity=0.008 Sum_probs=20.2
Q ss_pred cceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
.-.++.+++|||||.++-.++..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567789999999999888776654
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=61.58 E-value=9.3 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
..+++.++.-.......+.+|.|+|||.+.-.++....
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56888874322235788999999999999555554443
No 457
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.84 E-value=4.6 Score=36.66 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=15.6
Q ss_pred cceEEEcCCCCCHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~ 63 (411)
+-.++.++||+|||.+.-++
T Consensus 26 gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36688999999999984333
No 458
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=60.67 E-value=7.7 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..++........++.+..|+|||..+=.++
T Consensus 160 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 193 (770)
T 1w9i_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193 (770)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHH
Confidence 3566677665555688999999999998854443
No 459
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=60.67 E-value=8.7 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=20.4
Q ss_pred EEcCCCCCHHHHHHHHHH---hc-CCceEEEE
Q 015196 48 IVLPCGAGKSLVGVSAAC---RI-KKSCLCLA 75 (411)
Q Consensus 48 l~~~tG~GKT~~a~~~~~---~~-~~~~lil~ 75 (411)
....-|.|||.+++.++. +. +++++++=
T Consensus 10 ~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 10 VSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred ECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 346689999999877753 44 66787775
No 460
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=60.46 E-value=7.6 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..+.........++.+..|+|||..+=.++
T Consensus 128 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 128 DKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 3566677665555688999999999998754443
No 461
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=60.21 E-value=6.4 Score=31.76 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=15.9
Q ss_pred ceEEEcCCCCCHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~ 64 (411)
...+.+|.|+|||...-.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 56789999999998755443
No 462
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=60.17 E-value=14 Score=33.79 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCeEEEEecChhHHHHHHHHh--------CCceeeCCCCHHHHHHHHHHhcCCCCeeEEEeecc-Cc---cccCccCcc
Q 015196 267 RGDKIIVFADNLFALTEYAMKL--------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV-GD---NSIDIPEAN 334 (411)
Q Consensus 267 ~~~~~ivf~~~~~~~~~l~~~l--------~~~~i~g~~~~~~r~~~~~~f~~~~~~~vlv~t~~-~~---~Gid~~~~~ 334 (411)
.+.+++|.+++++-+.+..+.+ .+..++|+.+..++....+.+..+ +.+|+|+|.- +. .-++..+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECHHHHHHHHHHhcccccc
Confidence 4778999999998877776655 245678999988888888888886 8899999842 21 124556788
Q ss_pred EEEEe
Q 015196 335 VIIQI 339 (411)
Q Consensus 335 ~vi~~ 339 (411)
++|+.
T Consensus 142 ~iViD 146 (414)
T 3oiy_A 142 FVFVD 146 (414)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88875
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=59.55 E-value=6.3 Score=32.19 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=16.3
Q ss_pred cceEEEcCCCCCHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~ 64 (411)
.-.++.+|+|+|||.+.-++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 366889999999998854443
No 464
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=59.54 E-value=6.3 Score=33.06 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=21.7
Q ss_pred EEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
.+.+.-|+|||.+++.++. +.+++++++=
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4478899999999888764 3466777774
No 465
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=59.19 E-value=14 Score=33.74 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHH
Q 015196 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 26 l~~~Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
+-..=..+++.+..-..-.+.++.++.|+|||.++..++.
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 3355667777775433335899999999999999866554
No 466
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=59.08 E-value=6.2 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=17.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
.-..|.+|.|+|||.+.-.++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36678899999999986555443
No 467
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=58.81 E-value=8.5 Score=38.71 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..+.........++.+..|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 4566677665555688999999999998854443
No 468
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=58.72 E-value=6.7 Score=33.04 Aligned_cols=24 Identities=17% Similarity=-0.116 Sum_probs=18.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-..|.+|.|||||.++-.+...++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999999766655443
No 469
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=58.64 E-value=8.7 Score=38.53 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
=..|+..++.......+++.+..|+|||..+=.++
T Consensus 158 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 158 SDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 34566666665555688999999999998854443
No 470
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=58.58 E-value=9.4 Score=36.01 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=21.1
Q ss_pred ceEEEcCCCCCHHHHHHHHHH---hcCCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil 74 (411)
-..+.++.|+|||.++..++. ..++++++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 456889999999988655543 234677766
No 471
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=58.52 E-value=11 Score=30.90 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEcCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
+....-|+|||.+++.++. +.+ +++++=
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4457789999999877753 446 777753
No 472
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=58.37 E-value=7.3 Score=38.87 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=17.4
Q ss_pred HHHHHhCCCCcceEEEcCCCCCHHHHHH
Q 015196 34 LSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (411)
Q Consensus 34 i~~~~~~~~~~~~ll~~~tG~GKT~~a~ 61 (411)
+..++.+. ...++..+.||||||+++.
T Consensus 455 v~~~~~G~-n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 455 IQCSLDGT-NVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHTTC-CEEEEEESSTTSSHHHHHH
T ss_pred HHHHhCCc-eEEEEccCCCCCchhhccC
Confidence 34445443 2234446999999999974
No 473
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.25 E-value=20 Score=42.03 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCCCCChhHHHHHHHHH---hCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEEcChhh
Q 015196 22 PHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (411)
Q Consensus 22 ~~~~l~~~Q~~ai~~~~---~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~P~~~l 80 (411)
+....+|-=.+++..+. ... ..+.+.+|+|+|||.++-.++..++..++++-....+
T Consensus 582 ~rLViTPLTdrcy~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~ 641 (3245)
T 3vkg_A 582 ERLVQTPLTDRCYLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF 641 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred CCCcCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 34556777777776653 322 3678999999999999999999999888887665544
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=57.57 E-value=6.3 Score=35.67 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=14.5
Q ss_pred ceEEEcCCCCCHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVS 62 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~ 62 (411)
-.+|.+|+|+|||.+.-+
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 567899999999987433
No 475
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=57.30 E-value=12 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred eEEEcCCCCCHHHHHHHHHH---hcCCceEEE
Q 015196 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (411)
Q Consensus 46 ~ll~~~tG~GKT~~a~~~~~---~~~~~~lil 74 (411)
..+.+..|+|||.+++.++. +.+++++++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34467889999999877653 446677765
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=56.52 E-value=7.6 Score=32.02 Aligned_cols=23 Identities=35% Similarity=0.173 Sum_probs=18.3
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-.++.++.|+|||..+-.+...+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45677999999999987776555
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=56.47 E-value=12 Score=35.39 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc-CCc---eEEEEcCh-hhHHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-KKS---CLCLATNA-VSVDQWAFQFKL 90 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~---~lil~P~~-~l~~q~~~~~~~ 90 (411)
.++++.++.-..-.+..+.++.|+|||.+++..+.+. +.. +++.+-.+ .=+.++.+++..
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 5677777532222489999999999999988665443 333 22333222 224455555554
No 478
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=56.33 E-value=12 Score=31.89 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEcCCCCCHHHHHHHHHH---hcCCceEEE
Q 015196 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (411)
Q Consensus 47 ll~~~tG~GKT~~a~~~~~---~~~~~~lil 74 (411)
.+.+.-|.|||.+++.++. +.+++++++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 3457889999999877653 446677775
No 479
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=56.27 E-value=8.4 Score=36.77 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEEE--cCh-hhHHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA--TNA-VSVDQWAFQFKL 90 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil~--P~~-~l~~q~~~~~~~ 90 (411)
.++++.++.-..-.+..+.++.|+|||.++..++.....-++|++ -.+ .=+.++.++|.+
T Consensus 215 irvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iGER~~Ev~e~~~~~~e 277 (588)
T 3mfy_A 215 QRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPK 277 (588)
T ss_dssp CHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEEEECCSSSSHHHHHHHHTTT
T ss_pred cchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHH
Confidence 467777743222248999999999999988776665544344333 221 224445555544
No 480
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=55.93 E-value=8.7 Score=36.62 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 32 ~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
.+++.++.-..-.+..+.++.|+|||.++..++.....-++|+
T Consensus 210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~ 252 (578)
T 3gqb_A 210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNADVVVY 252 (578)
T ss_dssp HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccCCCEEEE
Confidence 5666553222224889999999999999888776655444433
No 481
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=55.01 E-value=8.9 Score=38.82 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..++........++.+..|+|||..+=.++
T Consensus 157 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 157 DNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp HHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHH
Confidence 3566666665555688899999999998854443
No 482
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=54.75 E-value=15 Score=34.36 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHhc
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
.++++.++.-..-.+..+.++.|+|||.++..++...
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 4778777532222489999999999999988887653
No 483
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=54.70 E-value=9.9 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=21.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~ 70 (411)
...+.++.|||||.++-.++.+++-.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 45677999999999999999888744
No 484
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=54.70 E-value=7.6 Score=34.22 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=15.6
Q ss_pred ceEEEcCCCCCHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~ 64 (411)
-..|.+|.|+|||..+-.+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678999999999865554
No 485
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=54.64 E-value=9.2 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=19.3
Q ss_pred cCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 50 ~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...|+|||.+++.++. +.+++++++=
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5689999999877753 4466777764
No 486
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=54.49 E-value=11 Score=33.38 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=23.6
Q ss_pred ceEEEcCCCCCHHHHHHHHHHh-cCCceEEEEcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACR-IKKSCLCLATN 77 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~-~~~~~lil~P~ 77 (411)
-.+|.++.|+|||...-.++.. .+.++.|+.|.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 4678999999999885555433 34577777764
No 487
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=53.86 E-value=12 Score=36.51 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc---CCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~lil 74 (411)
..++.+.+|||||.++-.+...+ +..++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 46778999999999988887766 5455544
No 488
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=53.48 E-value=8.3 Score=33.90 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.0
Q ss_pred cceEEEcCCCCCHHHHHHHHHHh
Q 015196 44 RSGIIVLPCGAGKSLVGVSAACR 66 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~~ 66 (411)
...++.++.|+|||.+|+.++.+
T Consensus 148 ~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35788999999999998887653
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=52.83 E-value=4.7 Score=35.17 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=15.7
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcC
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~ 68 (411)
-..|.+|.|||||.++-.+...++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999877765543
No 490
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=52.78 E-value=12 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..+........+++.+..|+|||..+=.++
T Consensus 134 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 134 EGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp HHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3566667665555688999999999998854443
No 491
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=52.76 E-value=11 Score=39.02 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHH
Q 015196 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (411)
Q Consensus 31 ~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~ 64 (411)
..|+..++.......+++.+..|+|||..+=.++
T Consensus 160 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp HHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 3566667665555688999999999998854443
No 492
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=52.75 E-value=7.3 Score=33.04 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred cCCCCCHHHHHHHHHH---hcCCceEEEE
Q 015196 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (411)
Q Consensus 50 ~~tG~GKT~~a~~~~~---~~~~~~lil~ 75 (411)
...|.|||.+++.++. +.+.+++++=
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5679999999877653 4467888774
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=52.72 E-value=9.6 Score=32.45 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=19.3
Q ss_pred EcCCCCCHHHHHHHHHHh--cCCceEEEE
Q 015196 49 VLPCGAGKSLVGVSAACR--IKKSCLCLA 75 (411)
Q Consensus 49 ~~~tG~GKT~~a~~~~~~--~~~~~lil~ 75 (411)
...-|+|||.+++.++.. .+++++++=
T Consensus 34 s~kGGvGKTT~a~~LA~~la~g~~VlliD 62 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLSKNNKVLLID 62 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHCCCCEEEEE
Confidence 366899999998776433 456777764
No 494
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=52.34 E-value=9.1 Score=34.12 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=15.8
Q ss_pred cceEEEcCCCCCHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSA 63 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~ 63 (411)
+-.++.+|+|+|||.+.-++
T Consensus 24 ~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35678999999999985443
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.25 E-value=14 Score=35.31 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHHhCC--CCcceEEEcCCCCCHHHHHHHHHH---hcCCceEEEEcChhhHHHHHHHH
Q 015196 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQF 88 (411)
Q Consensus 34 i~~~~~~~--~~~~~ll~~~tG~GKT~~a~~~~~---~~~~~~lil~P~~~l~~q~~~~~ 88 (411)
+..++... .....++.+++|+|||..+..++. ..+.+++++++... ..|+....
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHH
Confidence 44554432 223567889999999998766543 23457888887554 33444443
No 496
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=51.99 E-value=22 Score=33.42 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCCHHHHHHHHHHh-cCCc---eEEEEcCh-hhHHHHHHHHHH
Q 015196 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IKKS---CLCLATNA-VSVDQWAFQFKL 90 (411)
Q Consensus 30 Q~~ai~~~~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-~~~~---~lil~P~~-~l~~q~~~~~~~ 90 (411)
=.++++.++.-..-.+..+.++.|+|||.+++..+.+ .+.. +++.+-.+ .=+.++.+++..
T Consensus 149 GiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 149 GIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp SCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhh
Confidence 3567777643323358999999999999998766543 3333 22333222 224455566655
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=51.80 E-value=9.4 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.014 Sum_probs=18.2
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhc
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRI 67 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~ 67 (411)
-.++.++.|+|||..+-.+...+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999987776544
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=51.61 E-value=9.6 Score=31.68 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCHHHHHHHHHHhcCCceEEE
Q 015196 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~~~~~~~lil 74 (411)
-..+.++.|+|||..+-.+... ++.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4567899999999875554443 4445444
No 499
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.59 E-value=11 Score=29.43 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=16.4
Q ss_pred cceEEEcCCCCCHHHHHHHHHH
Q 015196 44 RSGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 44 ~~~ll~~~tG~GKT~~a~~~~~ 65 (411)
.-..+.+|.|+|||...-.++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999987554443
No 500
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=51.43 E-value=9.9 Score=28.95 Aligned_cols=21 Identities=24% Similarity=-0.024 Sum_probs=16.8
Q ss_pred ceEEEcCCCCCHHHHHHHHHH
Q 015196 45 SGIIVLPCGAGKSLVGVSAAC 65 (411)
Q Consensus 45 ~~ll~~~tG~GKT~~a~~~~~ 65 (411)
..++.+++|+|||-..-.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 678899999999987655553
Done!