Query 015198
Match_columns 411
No_of_seqs 762 out of 2387
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111 Uncharacterized conser 100.0 4.4E-44 9.6E-49 300.2 36.1 332 46-409 7-343 (346)
2 KOG0271 Notchless-like WD40 re 100.0 1.6E-42 3.5E-47 296.9 26.6 278 39-386 110-479 (480)
3 KOG2110 Uncharacterized conser 100.0 1.5E-38 3.3E-43 271.9 37.1 339 43-407 4-349 (391)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-37 3.1E-42 269.8 22.0 284 34-386 165-458 (459)
5 KOG0279 G protein beta subunit 100.0 5.8E-35 1.3E-39 241.1 32.6 294 36-388 7-313 (315)
6 KOG0286 G-protein beta subunit 100.0 3.6E-34 7.8E-39 237.8 31.3 288 33-386 44-343 (343)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-36 4.1E-41 262.8 17.3 242 35-289 208-458 (459)
8 KOG0271 Notchless-like WD40 re 100.0 3.5E-35 7.5E-40 252.0 20.8 242 38-289 151-479 (480)
9 KOG0315 G-protein beta subunit 100.0 3.8E-34 8.2E-39 232.6 24.3 253 42-304 38-301 (311)
10 KOG0295 WD40 repeat-containing 100.0 6.8E-34 1.5E-38 242.7 23.9 257 33-302 97-375 (406)
11 KOG0273 Beta-transducin family 100.0 1.5E-32 3.3E-37 241.6 29.7 276 42-388 233-523 (524)
12 KOG0265 U5 snRNP-specific prot 100.0 5.8E-32 1.3E-36 225.5 26.8 285 34-387 37-337 (338)
13 KOG0291 WD40-repeat-containing 100.0 1.1E-31 2.4E-36 248.4 31.5 301 38-389 301-613 (893)
14 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 2.9E-35 233.8 34.6 279 39-386 4-289 (289)
15 KOG0263 Transcription initiati 100.0 2.9E-32 6.3E-37 254.1 23.1 244 42-296 376-654 (707)
16 KOG0285 Pleiotropic regulator 100.0 1.9E-31 4E-36 227.3 24.6 293 37-392 144-443 (460)
17 KOG0279 G protein beta subunit 100.0 5.9E-31 1.3E-35 217.4 26.3 242 38-292 57-314 (315)
18 KOG0645 WD40 repeat protein [G 100.0 5.8E-30 1.3E-34 210.7 29.6 287 36-388 6-311 (312)
19 KOG0266 WD40 repeat-containing 100.0 3.2E-30 7E-35 245.5 31.9 251 43-302 158-420 (456)
20 KOG1407 WD40 repeat protein [F 100.0 2.3E-30 4.9E-35 212.0 23.5 247 38-296 14-266 (313)
21 KOG0318 WD40 repeat stress pro 100.0 2.6E-29 5.6E-34 224.2 31.6 285 39-388 185-602 (603)
22 KOG0273 Beta-transducin family 100.0 2.6E-30 5.6E-35 227.6 24.8 280 41-389 175-483 (524)
23 KOG0286 G-protein beta subunit 100.0 1.6E-29 3.4E-34 210.3 28.1 238 40-289 93-343 (343)
24 KOG0292 Vesicle coat complex C 100.0 3.2E-30 7E-35 242.4 27.0 284 40-392 5-325 (1202)
25 KOG0284 Polyadenylation factor 100.0 1.6E-31 3.6E-36 231.2 17.0 240 43-296 95-342 (464)
26 PLN00181 protein SPA1-RELATED; 100.0 3.9E-29 8.4E-34 255.1 36.1 291 40-387 479-792 (793)
27 KOG0291 WD40-repeat-containing 100.0 3.2E-29 7E-34 232.2 31.3 247 39-297 345-618 (893)
28 KOG0282 mRNA splicing factor [ 100.0 2.3E-31 4.9E-36 235.1 16.2 285 36-386 206-503 (503)
29 KOG0316 Conserved WD40 repeat- 100.0 1.6E-29 3.5E-34 204.1 25.5 248 35-296 8-262 (307)
30 KOG0643 Translation initiation 100.0 1.2E-29 2.6E-34 208.4 24.0 299 39-389 5-318 (327)
31 KOG0276 Vesicle coat complex C 100.0 9.5E-30 2.1E-34 231.1 25.5 246 39-296 8-262 (794)
32 KOG0295 WD40 repeat-containing 100.0 3.7E-30 8E-35 219.9 20.7 245 37-290 143-405 (406)
33 KOG0293 WD40 repeat-containing 100.0 3.3E-30 7.1E-35 223.5 20.6 290 35-389 215-514 (519)
34 KOG0315 G-protein beta subunit 100.0 9.4E-29 2E-33 201.2 27.4 262 58-389 12-289 (311)
35 KOG0318 WD40 repeat stress pro 100.0 4E-28 8.6E-33 216.6 31.3 254 37-297 52-356 (603)
36 KOG0281 Beta-TrCP (transducin 100.0 9.5E-31 2E-35 222.3 13.9 288 31-389 184-478 (499)
37 KOG0263 Transcription initiati 100.0 3.5E-29 7.5E-34 233.7 24.3 243 83-392 374-653 (707)
38 KOG0319 WD40-repeat-containing 100.0 2.5E-29 5.4E-34 232.5 22.7 285 42-397 103-583 (775)
39 KOG0284 Polyadenylation factor 100.0 1.6E-30 3.4E-35 225.2 13.7 244 39-294 133-383 (464)
40 KOG0296 Angio-associated migra 100.0 1.9E-28 4.2E-33 209.5 24.9 245 36-291 98-398 (399)
41 KOG0296 Angio-associated migra 100.0 1.2E-27 2.5E-32 204.8 26.3 280 38-388 58-398 (399)
42 KOG0319 WD40-repeat-containing 100.0 4.2E-28 9E-33 224.5 25.2 282 38-389 317-620 (775)
43 KOG0266 WD40 repeat-containing 100.0 1.6E-27 3.4E-32 227.0 26.6 246 36-291 195-454 (456)
44 KOG1446 Histone H3 (Lys4) meth 100.0 5.8E-26 1.3E-30 191.5 31.9 247 39-296 9-267 (311)
45 KOG0772 Uncharacterized conser 100.0 1.1E-27 2.3E-32 213.3 22.6 284 39-389 162-487 (641)
46 KOG0285 Pleiotropic regulator 100.0 3E-27 6.6E-32 201.7 22.2 239 83-389 147-390 (460)
47 cd00200 WD40 WD40 domain, foun 100.0 4E-26 8.6E-31 204.7 29.5 239 38-289 45-289 (289)
48 KOG0292 Vesicle coat complex C 100.0 5.9E-26 1.3E-30 214.0 30.6 244 36-293 43-323 (1202)
49 KOG0276 Vesicle coat complex C 100.0 2.1E-26 4.5E-31 209.5 26.0 244 38-293 49-300 (794)
50 KOG0283 WD40 repeat-containing 100.0 5.3E-27 1.1E-31 220.9 22.6 242 42-294 265-579 (712)
51 KOG0316 Conserved WD40 repeat- 100.0 1.6E-26 3.5E-31 186.8 21.6 238 83-389 13-258 (307)
52 KOG0265 U5 snRNP-specific prot 100.0 1.9E-26 4.2E-31 192.6 22.6 239 39-290 85-337 (338)
53 KOG0306 WD40-repeat-containing 100.0 3.4E-26 7.3E-31 212.2 26.5 282 39-389 368-665 (888)
54 KOG0301 Phospholipase A2-activ 100.0 3.1E-26 6.8E-31 210.8 25.0 278 37-390 7-290 (745)
55 KOG0313 Microtubule binding pr 100.0 5.2E-26 1.1E-30 195.6 24.4 281 36-389 97-419 (423)
56 KOG0310 Conserved WD40 repeat- 100.0 4.6E-26 1E-30 201.9 24.2 276 40-385 22-306 (487)
57 KOG0645 WD40 repeat protein [G 100.0 5.5E-25 1.2E-29 181.5 28.5 237 81-389 8-262 (312)
58 KOG0274 Cdc4 and related F-box 99.9 9.6E-26 2.1E-30 214.5 26.0 273 42-389 206-483 (537)
59 KOG0288 WD40 repeat protein Ti 99.9 6.7E-27 1.5E-31 203.1 16.0 248 37-297 168-423 (459)
60 PLN00181 protein SPA1-RELATED; 99.9 5.9E-25 1.3E-29 224.5 32.0 236 43-290 531-792 (793)
61 KOG0282 mRNA splicing factor [ 99.9 4.6E-27 9.9E-32 208.0 13.8 241 36-289 250-503 (503)
62 KOG0973 Histone transcription 99.9 2.6E-25 5.7E-30 214.6 26.4 291 41-397 10-364 (942)
63 KOG0275 Conserved WD40 repeat- 99.9 2.2E-26 4.7E-31 194.3 15.4 248 41-298 210-474 (508)
64 KOG0973 Histone transcription 99.9 2.4E-25 5.2E-30 215.0 24.6 260 36-302 61-366 (942)
65 KOG0293 WD40 repeat-containing 99.9 4.8E-26 1E-30 197.7 17.2 244 36-293 261-515 (519)
66 KOG0305 Anaphase promoting com 99.9 3.4E-25 7.4E-30 203.5 23.8 242 43-295 216-465 (484)
67 KOG0278 Serine/threonine kinas 99.9 8.3E-26 1.8E-30 184.3 16.2 284 39-392 9-301 (334)
68 KOG0281 Beta-TrCP (transducin 99.9 3.2E-26 6.8E-31 194.9 13.4 236 38-296 231-482 (499)
69 KOG0289 mRNA splicing factor [ 99.9 3.4E-24 7.3E-29 187.5 25.9 235 45-289 220-460 (506)
70 KOG0277 Peroxisomal targeting 99.9 4E-25 8.7E-30 180.7 18.2 237 43-290 59-308 (311)
71 KOG0278 Serine/threonine kinas 99.9 5.5E-26 1.2E-30 185.3 13.1 243 37-296 52-302 (334)
72 KOG0268 Sof1-like rRNA process 99.9 1.1E-25 2.4E-30 192.6 15.4 288 30-388 52-345 (433)
73 PTZ00421 coronin; Provisional 99.9 8E-24 1.7E-28 201.1 29.0 226 39-272 70-314 (493)
74 KOG0294 WD40 repeat-containing 99.9 4.8E-24 1E-28 179.5 22.9 240 39-296 38-286 (362)
75 KOG0640 mRNA cleavage stimulat 99.9 2.1E-24 4.6E-29 181.2 20.6 247 38-291 106-426 (430)
76 KOG0647 mRNA export protein (c 99.9 1.3E-23 2.9E-28 175.9 25.1 249 38-298 21-288 (347)
77 KOG0306 WD40-repeat-containing 99.9 1.4E-24 3E-29 201.6 21.2 235 45-292 413-665 (888)
78 KOG0313 Microtubule binding pr 99.9 5.8E-24 1.3E-28 183.1 22.4 242 37-291 137-418 (423)
79 KOG0305 Anaphase promoting com 99.9 1.8E-23 3.9E-28 192.2 26.5 277 48-395 181-468 (484)
80 KOG0283 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 200.6 23.7 244 85-391 265-579 (712)
81 KOG1407 WD40 repeat protein [F 99.9 1.5E-23 3.2E-28 172.2 23.0 238 39-291 59-311 (313)
82 KOG2096 WD40 repeat protein [G 99.9 4.8E-23 1E-27 173.7 25.5 285 37-389 79-403 (420)
83 KOG0277 Peroxisomal targeting 99.9 1E-23 2.2E-28 172.5 20.8 236 48-294 12-268 (311)
84 PTZ00421 coronin; Provisional 99.9 5.3E-23 1.1E-27 195.6 28.9 246 41-296 17-295 (493)
85 PTZ00420 coronin; Provisional 99.9 7.7E-23 1.7E-27 195.4 29.6 230 37-273 67-318 (568)
86 KOG0274 Cdc4 and related F-box 99.9 3.6E-23 7.9E-28 197.0 26.8 242 39-299 244-490 (537)
87 KOG0299 U3 snoRNP-associated p 99.9 4.9E-23 1.1E-27 181.5 25.4 248 37-294 135-413 (479)
88 KOG0275 Conserved WD40 repeat- 99.9 5.5E-25 1.2E-29 185.8 12.3 240 40-289 259-507 (508)
89 KOG0288 WD40 repeat protein Ti 99.9 7.1E-24 1.5E-28 184.4 18.7 242 36-289 211-459 (459)
90 KOG0641 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 155.6 31.8 284 41-388 29-349 (350)
91 KOG0310 Conserved WD40 repeat- 99.9 4.6E-23 9.9E-28 183.0 23.5 241 40-296 64-314 (487)
92 KOG0308 Conserved WD40 repeat- 99.9 7.7E-24 1.7E-28 193.8 18.0 245 42-295 19-289 (735)
93 KOG4283 Transcription-coupled 99.9 1.1E-22 2.3E-27 170.0 23.0 285 39-388 38-365 (397)
94 PTZ00420 coronin; Provisional 99.9 1.6E-21 3.4E-26 186.4 32.5 175 114-294 54-251 (568)
95 KOG0300 WD40 repeat-containing 99.9 1.4E-22 3E-27 170.9 21.6 287 36-389 140-477 (481)
96 KOG0643 Translation initiation 99.9 3.2E-23 7E-28 170.8 17.1 250 36-293 44-319 (327)
97 KOG1408 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 186.2 23.0 285 42-389 367-714 (1080)
98 KOG2055 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 175.1 23.7 286 38-388 207-512 (514)
99 KOG0640 mRNA cleavage stimulat 99.9 8.5E-23 1.8E-27 171.7 17.6 212 83-301 108-345 (430)
100 KOG0264 Nucleosome remodeling 99.9 1.3E-22 2.9E-27 178.8 19.6 245 39-293 119-406 (422)
101 KOG1446 Histone H3 (Lys4) meth 99.9 8.8E-21 1.9E-25 160.3 29.1 249 83-397 10-269 (311)
102 KOG1036 Mitotic spindle checkp 99.9 3.4E-21 7.5E-26 162.1 26.5 240 42-297 11-268 (323)
103 KOG1274 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 183.0 29.5 241 41-293 10-264 (933)
104 KOG1332 Vesicle coat complex C 99.9 1.1E-22 2.3E-27 165.7 16.2 247 39-293 6-288 (299)
105 KOG0639 Transducin-like enhanc 99.9 1E-22 2.2E-27 181.3 16.3 235 43-290 464-703 (705)
106 KOG0639 Transducin-like enhanc 99.9 3.7E-22 8E-27 177.7 19.8 244 41-296 416-668 (705)
107 KOG0772 Uncharacterized conser 99.9 5.9E-22 1.3E-26 177.0 20.8 207 81-296 161-399 (641)
108 KOG0641 WD40 repeat protein [G 99.9 1.3E-20 2.7E-25 152.0 26.2 247 38-291 83-349 (350)
109 KOG0269 WD40 repeat-containing 99.9 1.8E-22 4E-27 188.3 17.6 241 43-294 38-299 (839)
110 KOG1036 Mitotic spindle checkp 99.9 1.8E-21 4E-26 163.7 21.4 231 36-281 46-294 (323)
111 KOG0268 Sof1-like rRNA process 99.9 1.1E-22 2.3E-27 174.4 14.3 248 37-302 102-356 (433)
112 KOG0647 mRNA export protein (c 99.9 2.9E-21 6.2E-26 162.0 22.1 228 38-279 66-311 (347)
113 KOG1273 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 163.9 20.4 277 47-389 26-323 (405)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.6E-20 1.9E-24 165.8 32.8 226 57-295 2-241 (300)
115 KOG2048 WD40 repeat protein [G 99.9 3.2E-20 7E-25 171.1 29.6 243 41-295 22-279 (691)
116 KOG0289 mRNA splicing factor [ 99.9 1.2E-20 2.5E-25 165.4 23.6 240 38-290 255-505 (506)
117 KOG2445 Nuclear pore complex c 99.9 1.5E-20 3.4E-25 158.0 22.8 246 39-294 8-321 (361)
118 KOG2919 Guanine nucleotide-bin 99.9 2.9E-20 6.4E-25 157.3 22.6 240 46-294 51-330 (406)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-19 5.1E-24 162.9 30.3 238 45-297 31-285 (300)
120 KOG0299 U3 snoRNP-associated p 99.9 1.7E-20 3.6E-25 165.7 21.0 235 41-291 199-456 (479)
121 KOG0308 Conserved WD40 repeat- 99.9 1.3E-20 2.8E-25 172.9 20.9 265 18-293 47-329 (735)
122 KOG0646 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 166.9 19.6 235 57-300 51-316 (476)
123 KOG0294 WD40 repeat-containing 99.9 1.8E-19 3.9E-24 152.1 25.1 262 58-390 3-283 (362)
124 KOG2055 WD40 repeat protein [G 99.9 2.2E-20 4.7E-25 165.0 19.3 241 43-291 256-512 (514)
125 KOG0301 Phospholipase A2-activ 99.9 3.7E-20 8.1E-25 171.0 21.5 233 40-294 53-291 (745)
126 KOG1063 RNA polymerase II elon 99.9 9.1E-20 2E-24 168.5 23.4 291 38-390 261-650 (764)
127 KOG0646 WD40 repeat protein [G 99.9 1.8E-20 4E-25 165.7 18.0 218 43-274 80-332 (476)
128 KOG1539 WD repeat protein [Gen 99.9 4.9E-19 1.1E-23 166.9 28.3 246 38-296 196-611 (910)
129 KOG2106 Uncharacterized conser 99.9 5E-18 1.1E-22 151.8 32.9 274 42-389 198-478 (626)
130 KOG0267 Microtubule severing p 99.9 2.1E-21 4.6E-26 179.9 10.4 220 57-295 5-230 (825)
131 KOG0650 WD40 repeat nucleolar 99.9 1.9E-19 4.2E-24 163.8 22.7 253 29-291 385-680 (733)
132 KOG1332 Vesicle coat complex C 99.9 5.6E-20 1.2E-24 149.9 17.1 249 85-397 9-293 (299)
133 KOG1408 WD40 repeat protein [F 99.8 7.1E-20 1.5E-24 169.6 19.1 242 40-292 455-714 (1080)
134 KOG0267 Microtubule severing p 99.8 3.3E-21 7.2E-26 178.6 10.3 235 36-283 20-260 (825)
135 KOG2096 WD40 repeat protein [G 99.8 5.6E-19 1.2E-23 149.3 22.4 205 83-296 82-313 (420)
136 KOG0302 Ribosome Assembly prot 99.8 5E-19 1.1E-23 152.8 21.3 190 96-295 162-382 (440)
137 KOG2106 Uncharacterized conser 99.8 3E-18 6.6E-23 153.1 26.1 231 41-288 284-518 (626)
138 KOG0264 Nucleosome remodeling 99.8 1.9E-19 4.1E-24 159.0 18.0 202 128-389 119-348 (422)
139 KOG4378 Nuclear protein COP1 [ 99.8 9.2E-19 2E-23 156.1 21.4 237 47-295 37-284 (673)
140 KOG4283 Transcription-coupled 99.8 4.8E-18 1E-22 142.3 23.5 192 98-296 55-281 (397)
141 KOG1274 WD40 repeat protein [G 99.8 3.7E-18 8E-23 162.7 25.1 241 85-388 11-262 (933)
142 KOG4328 WD40 protein [Function 99.8 1.6E-18 3.5E-23 153.1 21.0 249 38-294 180-453 (498)
143 KOG0270 WD40 repeat-containing 99.8 9.8E-19 2.1E-23 154.0 19.5 232 56-296 192-454 (463)
144 KOG0300 WD40 repeat-containing 99.8 8.3E-19 1.8E-23 148.2 18.2 244 39-294 185-479 (481)
145 KOG1538 Uncharacterized conser 99.8 3.4E-18 7.4E-23 157.5 21.9 270 46-389 14-294 (1081)
146 KOG2048 WD40 repeat protein [G 99.8 6.4E-17 1.4E-21 149.5 29.8 325 42-391 67-414 (691)
147 KOG0321 WD40 repeat-containing 99.8 5.3E-18 1.1E-22 155.6 21.9 280 49-389 54-392 (720)
148 KOG1539 WD repeat protein [Gen 99.8 6.7E-17 1.5E-21 152.6 29.3 304 47-389 162-607 (910)
149 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 4.9E-23 148.8 17.8 205 132-392 150-382 (440)
150 KOG0307 Vesicle coat complex C 99.8 2.5E-19 5.5E-24 174.5 12.0 244 43-295 63-331 (1049)
151 KOG1034 Transcriptional repres 99.8 2.5E-17 5.5E-22 140.0 21.0 245 39-296 33-342 (385)
152 KOG0322 G-protein beta subunit 99.8 6.5E-18 1.4E-22 139.4 16.3 238 39-290 9-322 (323)
153 KOG0307 Vesicle coat complex C 99.8 6E-19 1.3E-23 171.9 12.0 278 48-389 10-328 (1049)
154 KOG0321 WD40 repeat-containing 99.8 8.1E-18 1.8E-22 154.4 18.2 251 38-297 94-397 (720)
155 KOG4378 Nuclear protein COP1 [ 99.8 6.9E-18 1.5E-22 150.6 16.7 215 47-273 82-305 (673)
156 KOG1273 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 138.7 18.7 193 90-292 26-227 (405)
157 KOG1063 RNA polymerase II elon 99.8 9E-17 2E-21 148.9 23.3 246 38-292 355-700 (764)
158 KOG0269 WD40 repeat-containing 99.8 3E-18 6.5E-23 160.4 12.5 239 47-296 90-345 (839)
159 KOG1009 Chromatin assembly com 99.8 9.1E-17 2E-21 140.2 20.7 251 38-296 59-377 (434)
160 KOG4227 WD40 repeat protein [G 99.8 2.1E-16 4.5E-21 137.4 22.5 308 38-388 50-387 (609)
161 KOG1538 Uncharacterized conser 99.8 4.3E-17 9.2E-22 150.4 17.5 241 35-292 44-294 (1081)
162 KOG1007 WD repeat protein TSSC 99.8 3E-16 6.6E-21 131.3 20.8 302 56-389 26-362 (370)
163 KOG1445 Tumor-specific antigen 99.8 6.7E-17 1.5E-21 148.3 18.3 98 195-295 648-754 (1012)
164 KOG0270 WD40 repeat-containing 99.7 6.3E-16 1.4E-20 136.5 23.0 236 48-296 129-409 (463)
165 COG2319 FOG: WD40 repeat [Gene 99.7 2.6E-14 5.5E-19 135.4 36.2 246 39-296 60-319 (466)
166 KOG2445 Nuclear pore complex c 99.7 2E-15 4.4E-20 127.4 24.6 266 85-396 11-326 (361)
167 KOG1007 WD repeat protein TSSC 99.7 2.9E-16 6.4E-21 131.3 18.2 243 39-292 58-362 (370)
168 PRK11028 6-phosphogluconolacto 99.7 8.5E-15 1.8E-19 135.0 29.5 221 64-294 11-261 (330)
169 KOG1524 WD40 repeat-containing 99.7 2.7E-16 5.8E-21 141.8 17.9 264 41-389 11-287 (737)
170 PRK11028 6-phosphogluconolacto 99.7 5.5E-15 1.2E-19 136.2 26.6 240 43-292 33-305 (330)
171 KOG0650 WD40 repeat nucleolar 99.7 9.2E-16 2E-20 140.1 18.6 240 81-386 394-678 (733)
172 KOG1034 Transcriptional repres 99.7 8E-16 1.7E-20 131.0 16.3 238 41-291 86-383 (385)
173 KOG0642 Cell-cycle nuclear pro 99.7 2.3E-16 5E-21 143.1 13.2 255 39-302 289-572 (577)
174 KOG1188 WD40 repeat protein [G 99.7 4E-15 8.7E-20 127.4 18.6 190 57-256 41-251 (376)
175 KOG1272 WD40-repeat-containing 99.7 1.2E-16 2.7E-21 141.6 9.6 226 46-290 131-361 (545)
176 KOG1963 WD40 repeat protein [G 99.7 3.6E-14 7.8E-19 135.4 26.8 293 41-389 202-539 (792)
177 KOG1009 Chromatin assembly com 99.7 3.6E-14 7.9E-19 124.2 24.4 285 43-393 12-377 (434)
178 KOG0290 Conserved WD40 repeat- 99.7 7.6E-15 1.6E-19 123.1 19.0 237 41-288 93-362 (364)
179 KOG0644 Uncharacterized conser 99.7 2.3E-16 5.1E-21 149.0 11.2 293 38-407 184-485 (1113)
180 KOG2321 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 131.6 22.4 294 41-409 48-360 (703)
181 KOG1963 WD40 repeat protein [G 99.7 7.3E-14 1.6E-18 133.4 27.7 237 46-296 18-327 (792)
182 KOG4328 WD40 protein [Function 99.7 2.9E-15 6.3E-20 132.8 16.8 242 40-291 230-495 (498)
183 KOG1587 Cytoplasmic dynein int 99.7 9.9E-15 2.2E-19 138.6 21.2 261 65-389 222-517 (555)
184 KOG0322 G-protein beta subunit 99.7 2.1E-15 4.6E-20 124.7 13.8 239 84-387 11-322 (323)
185 KOG1517 Guanine nucleotide bin 99.7 3.5E-14 7.6E-19 137.7 23.3 289 42-389 1062-1382(1387)
186 KOG0771 Prolactin regulatory e 99.7 2.6E-15 5.7E-20 132.0 14.4 196 91-295 148-358 (398)
187 KOG1523 Actin-related protein 99.6 2E-14 4.3E-19 122.2 18.7 202 44-295 10-240 (361)
188 KOG0303 Actin-binding protein 99.6 1.5E-13 3.3E-18 119.9 24.2 209 45-295 28-253 (472)
189 COG2319 FOG: WD40 repeat [Gene 99.6 2.3E-12 5E-17 121.9 35.1 238 45-294 110-362 (466)
190 KOG1524 WD40 repeat-containing 99.6 5.9E-15 1.3E-19 133.3 15.4 203 58-288 77-283 (737)
191 KOG0303 Actin-binding protein 99.6 3.3E-14 7.1E-19 124.0 19.1 226 38-272 75-320 (472)
192 KOG2919 Guanine nucleotide-bin 99.6 1.2E-14 2.7E-19 123.5 15.4 228 44-282 104-361 (406)
193 KOG4497 Uncharacterized conser 99.6 1.4E-13 3.1E-18 117.5 21.1 186 49-245 13-238 (447)
194 KOG1188 WD40 repeat protein [G 99.6 2E-14 4.4E-19 123.1 15.9 184 150-389 48-243 (376)
195 KOG0290 Conserved WD40 repeat- 99.6 2.3E-13 5E-18 114.3 21.4 240 44-295 44-322 (364)
196 KOG0649 WD40 repeat protein [G 99.6 4.3E-13 9.3E-18 110.0 22.4 195 90-296 13-240 (325)
197 KOG1334 WD40 repeat protein [G 99.6 8.8E-15 1.9E-19 130.8 13.5 255 35-296 133-429 (559)
198 KOG1272 WD40-repeat-containing 99.6 3.2E-15 6.9E-20 132.8 10.1 196 88-296 130-328 (545)
199 PRK01742 tolB translocation pr 99.6 2.8E-13 6E-18 129.0 23.4 171 114-295 184-365 (429)
200 KOG0649 WD40 repeat protein [G 99.6 1.3E-12 2.8E-17 107.2 23.0 239 34-289 52-314 (325)
201 PRK01742 tolB translocation pr 99.6 1E-13 2.3E-18 131.9 19.5 215 39-272 198-426 (429)
202 KOG2394 WD40 protein DMR-N9 [G 99.6 1.8E-13 3.9E-18 123.9 19.1 227 46-296 125-367 (636)
203 KOG2110 Uncharacterized conser 99.6 1.6E-11 3.6E-16 106.6 29.3 231 46-294 48-333 (391)
204 KOG1240 Protein kinase contain 99.6 1.7E-12 3.7E-17 128.1 25.8 270 20-296 1022-1339(1431)
205 PRK04922 tolB translocation pr 99.6 1.4E-12 3E-17 124.5 24.9 176 114-295 184-372 (433)
206 KOG0771 Prolactin regulatory e 99.6 7E-14 1.5E-18 123.2 13.5 191 48-248 148-355 (398)
207 PRK03629 tolB translocation pr 99.6 2.4E-12 5.2E-17 122.4 25.0 215 66-293 180-408 (429)
208 KOG1587 Cytoplasmic dynein int 99.5 4.8E-13 1E-17 127.2 19.8 241 42-293 240-518 (555)
209 PRK02889 tolB translocation pr 99.5 6.4E-12 1.4E-16 119.5 26.9 175 114-295 176-364 (427)
210 KOG2315 Predicted translation 99.5 3.1E-11 6.7E-16 110.3 29.0 238 46-296 36-349 (566)
211 PRK04922 tolB translocation pr 99.5 1.8E-12 3.8E-17 123.7 21.8 215 66-293 185-413 (433)
212 KOG1517 Guanine nucleotide bin 99.5 7.9E-13 1.7E-17 128.5 18.9 243 43-294 1108-1384(1387)
213 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.9E-17 109.8 17.9 148 138-293 10-181 (194)
214 PRK03629 tolB translocation pr 99.5 1.6E-11 3.6E-16 116.7 27.0 175 114-294 179-366 (429)
215 PRK05137 tolB translocation pr 99.5 9.3E-12 2E-16 118.9 25.1 217 66-295 183-416 (435)
216 KOG3881 Uncharacterized conser 99.5 4E-12 8.7E-17 111.1 19.5 245 40-295 51-324 (412)
217 KOG1445 Tumor-specific antigen 99.5 2.5E-12 5.5E-17 118.7 17.7 177 114-294 603-801 (1012)
218 PRK05137 tolB translocation pr 99.5 3.5E-11 7.6E-16 115.0 26.5 174 114-294 182-369 (435)
219 KOG1310 WD40 repeat protein [G 99.5 4.2E-13 9.1E-18 121.8 12.3 209 34-251 40-307 (758)
220 PRK02889 tolB translocation pr 99.5 8.9E-12 1.9E-16 118.5 22.2 196 85-290 193-402 (427)
221 PF02239 Cytochrom_D1: Cytochr 99.5 1E-10 2.3E-15 108.1 27.4 192 56-255 5-210 (369)
222 KOG4497 Uncharacterized conser 99.5 6.6E-11 1.4E-15 101.4 23.7 236 44-294 48-394 (447)
223 KOG2139 WD40 repeat protein [G 99.4 6.7E-11 1.5E-15 102.6 22.2 247 42-294 138-434 (445)
224 KOG4227 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 108.2 17.7 241 40-291 101-387 (609)
225 PF02239 Cytochrom_D1: Cytochr 99.4 6.4E-11 1.4E-15 109.5 23.8 238 47-297 39-353 (369)
226 KOG0642 Cell-cycle nuclear pro 99.4 2.7E-12 5.8E-17 117.1 13.7 212 38-257 338-571 (577)
227 PF08662 eIF2A: Eukaryotic tra 99.4 4.3E-11 9.4E-16 100.6 19.4 114 177-296 8-138 (194)
228 KOG1310 WD40 repeat protein [G 99.4 4.6E-12 9.9E-17 115.2 13.1 208 81-296 44-308 (758)
229 TIGR02800 propeller_TolB tol-p 99.4 1.7E-10 3.8E-15 110.0 24.6 174 114-294 170-357 (417)
230 COG2706 3-carboxymuconate cycl 99.4 2.8E-09 6.1E-14 93.1 28.5 253 38-294 33-324 (346)
231 KOG1523 Actin-related protein 99.4 1.2E-10 2.6E-15 99.5 18.8 159 132-295 9-180 (361)
232 KOG1240 Protein kinase contain 99.4 1.4E-10 2.9E-15 115.0 21.7 212 77-296 1038-1278(1431)
233 PF10282 Lactonase: Lactonase, 99.3 2.6E-09 5.5E-14 98.9 28.7 241 44-291 36-322 (345)
234 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.6E-15 100.4 18.0 244 43-296 24-364 (433)
235 KOG2394 WD40 protein DMR-N9 [G 99.3 4.2E-11 9.1E-16 108.8 16.0 216 56-294 185-455 (636)
236 PRK01029 tolB translocation pr 99.3 6.2E-10 1.3E-14 105.6 24.2 201 85-295 182-407 (428)
237 TIGR02800 propeller_TolB tol-p 99.3 4.7E-10 1E-14 107.1 23.6 213 66-291 171-397 (417)
238 KOG2315 Predicted translation 99.3 5.6E-10 1.2E-14 102.2 22.5 236 48-293 129-392 (566)
239 KOG2111 Uncharacterized conser 99.3 3.7E-09 8E-14 90.5 25.2 214 65-293 75-324 (346)
240 KOG2139 WD40 repeat protein [G 99.3 2.5E-10 5.4E-15 99.1 18.2 153 133-292 98-269 (445)
241 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.1E-08 2.4E-13 92.7 29.6 236 52-297 53-336 (352)
242 KOG2041 WD40 repeat protein [G 99.3 3.6E-10 7.9E-15 106.2 20.2 285 43-389 13-338 (1189)
243 PF10282 Lactonase: Lactonase, 99.3 1.5E-07 3.3E-12 87.1 37.8 279 59-392 2-326 (345)
244 PRK00178 tolB translocation pr 99.3 3.4E-09 7.3E-14 101.4 27.7 175 114-295 179-367 (430)
245 PRK04792 tolB translocation pr 99.3 7E-10 1.5E-14 106.0 22.8 214 66-291 199-425 (448)
246 PRK00178 tolB translocation pr 99.3 9.4E-10 2E-14 105.3 22.9 213 67-292 181-407 (430)
247 KOG1409 Uncharacterized conser 99.3 4.9E-10 1.1E-14 96.7 17.7 249 32-294 12-273 (404)
248 KOG2314 Translation initiation 99.3 4.6E-09 1E-13 96.2 24.5 235 48-292 214-479 (698)
249 KOG3881 Uncharacterized conser 99.3 4.4E-10 9.4E-15 98.6 17.0 217 43-273 104-343 (412)
250 KOG4547 WD40 repeat-containing 99.3 4E-09 8.7E-14 97.4 23.9 188 98-296 4-225 (541)
251 PRK04792 tolB translocation pr 99.3 4.2E-09 9.2E-14 100.7 25.2 175 114-294 198-385 (448)
252 KOG0974 WD-repeat protein WDR6 99.2 4.2E-10 9.1E-15 110.0 17.8 137 150-292 107-247 (967)
253 COG5354 Uncharacterized protei 99.2 7.4E-09 1.6E-13 94.0 23.6 242 43-293 31-308 (561)
254 KOG1064 RAVE (regulator of V-A 99.2 1E-10 2.2E-15 119.7 12.4 188 87-297 2208-2404(2439)
255 KOG0280 Uncharacterized conser 99.2 5.2E-09 1.1E-13 88.7 20.1 219 65-295 46-288 (339)
256 KOG0644 Uncharacterized conser 99.2 2.9E-11 6.3E-16 115.2 7.4 230 83-389 186-427 (1113)
257 PRK01029 tolB translocation pr 99.2 6.3E-09 1.4E-13 98.7 23.0 225 40-273 180-426 (428)
258 KOG0974 WD-repeat protein WDR6 99.2 1.7E-08 3.8E-13 98.9 25.4 193 44-248 87-289 (967)
259 PF04762 IKI3: IKI3 family; I 99.2 1.8E-07 3.9E-12 96.1 33.2 241 45-294 22-336 (928)
260 PF04762 IKI3: IKI3 family; I 99.1 3E-07 6.4E-12 94.6 33.9 313 42-390 73-458 (928)
261 TIGR03300 assembly_YfgL outer 99.1 7E-08 1.5E-12 90.8 26.6 222 56-296 105-343 (377)
262 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.6E-07 1E-11 82.3 30.5 220 65-296 27-292 (352)
263 COG2706 3-carboxymuconate cycl 99.1 1.8E-07 3.9E-12 82.0 26.4 178 114-293 16-223 (346)
264 KOG2321 WD40 repeat protein [G 99.1 5.6E-09 1.2E-13 96.0 17.8 175 114-294 155-346 (703)
265 PLN02919 haloacid dehalogenase 99.1 2.1E-07 4.5E-12 97.5 30.2 238 48-295 571-892 (1057)
266 TIGR03300 assembly_YfgL outer 99.1 3.1E-07 6.7E-12 86.4 28.9 219 56-295 65-301 (377)
267 KOG1334 WD40 repeat protein [G 99.1 8.4E-10 1.8E-14 99.4 10.7 250 35-294 176-469 (559)
268 KOG1409 Uncharacterized conser 99.1 1.7E-08 3.7E-13 87.4 18.2 197 43-248 67-271 (404)
269 PF15492 Nbas_N: Neuroblastoma 99.0 3.2E-07 6.9E-12 78.2 23.6 233 49-300 2-268 (282)
270 COG4946 Uncharacterized protei 99.0 1.8E-07 3.8E-12 84.6 23.0 142 40-192 355-506 (668)
271 PF08450 SGL: SMP-30/Gluconola 99.0 2.9E-06 6.4E-11 74.7 30.7 192 93-294 5-215 (246)
272 KOG3914 WD repeat protein WDR4 99.0 9.6E-09 2.1E-13 90.7 14.0 155 139-297 68-229 (390)
273 KOG2314 Translation initiation 99.0 2.1E-07 4.5E-12 85.6 22.6 238 45-294 250-528 (698)
274 PRK04043 tolB translocation pr 99.0 5E-07 1.1E-11 85.3 26.2 195 89-295 189-404 (419)
275 KOG1064 RAVE (regulator of V-A 99.0 7.3E-09 1.6E-13 106.6 14.1 194 41-257 2205-2408(2439)
276 KOG1354 Serine/threonine prote 99.0 5.4E-09 1.2E-13 90.4 11.3 253 87-389 25-360 (433)
277 COG4946 Uncharacterized protei 99.0 4.1E-07 8.9E-12 82.3 22.4 185 95-295 274-481 (668)
278 PF08450 SGL: SMP-30/Gluconola 98.9 6.5E-06 1.4E-10 72.4 29.8 212 49-280 4-244 (246)
279 KOG0280 Uncharacterized conser 98.9 1.1E-07 2.5E-12 80.7 17.1 179 114-295 46-245 (339)
280 PF07433 DUF1513: Protein of u 98.9 4.2E-06 9.1E-11 73.5 26.7 238 46-293 6-285 (305)
281 KOG4532 WD40-like repeat conta 98.9 3.6E-07 7.8E-12 76.8 19.0 238 49-295 72-335 (344)
282 PRK04043 tolB translocation pr 98.9 4.4E-06 9.6E-11 79.0 28.9 172 114-294 169-360 (419)
283 COG5170 CDC55 Serine/threonine 98.9 4.8E-08 1E-12 83.6 13.4 236 39-295 21-313 (460)
284 COG5354 Uncharacterized protei 98.9 1.9E-06 4.1E-11 78.7 23.7 237 49-296 136-400 (561)
285 KOG1912 WD40 repeat protein [G 98.8 2.6E-07 5.6E-12 88.3 17.5 235 46-294 17-307 (1062)
286 PRK11138 outer membrane biogen 98.8 3.9E-06 8.5E-11 79.3 25.3 223 56-296 120-358 (394)
287 PF13360 PQQ_2: PQQ-like domai 98.8 2.2E-06 4.9E-11 74.9 22.1 215 64-295 2-234 (238)
288 KOG2041 WD40 repeat protein [G 98.8 3.7E-07 7.9E-12 86.5 17.4 228 38-277 65-324 (1189)
289 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.4E-13 93.8 7.1 202 83-293 731-950 (1034)
290 KOG0882 Cyclophilin-related pe 98.8 8.7E-08 1.9E-12 85.9 11.3 245 43-299 8-313 (558)
291 PLN02919 haloacid dehalogenase 98.8 1.2E-05 2.5E-10 84.6 28.6 195 93-295 573-837 (1057)
292 KOG4547 WD40 repeat-containing 98.7 8.2E-07 1.8E-11 82.4 17.1 146 56-206 70-221 (541)
293 KOG0309 Conserved WD40 repeat- 98.7 1.7E-07 3.7E-12 89.0 12.2 240 42-294 22-280 (1081)
294 KOG4532 WD40-like repeat conta 98.7 4.1E-06 8.9E-11 70.6 18.5 189 99-296 84-287 (344)
295 KOG1912 WD40 repeat protein [G 98.7 9.8E-06 2.1E-10 77.8 23.3 253 33-296 44-369 (1062)
296 PRK11138 outer membrane biogen 98.7 1.4E-05 3.1E-10 75.5 24.6 224 56-295 69-316 (394)
297 KOG4190 Uncharacterized conser 98.6 8.7E-08 1.9E-12 88.0 7.8 244 32-289 723-986 (1034)
298 PF00400 WD40: WD domain, G-be 98.6 1.1E-07 2.4E-12 57.2 5.8 39 249-289 1-39 (39)
299 KOG3914 WD repeat protein WDR4 98.6 1.3E-06 2.8E-11 77.6 13.9 152 46-206 64-224 (390)
300 PF13360 PQQ_2: PQQ-like domai 98.6 0.00011 2.3E-09 64.3 26.3 175 113-295 2-195 (238)
301 PF00400 WD40: WD domain, G-be 98.6 1.6E-07 3.4E-12 56.5 5.7 38 207-245 2-39 (39)
302 KOG4714 Nucleoporin [Nuclear s 98.6 1.1E-06 2.5E-11 73.5 12.0 109 177-289 182-316 (319)
303 KOG1920 IkappaB kinase complex 98.6 4.5E-05 9.7E-10 77.1 25.0 235 45-293 69-324 (1265)
304 PF15492 Nbas_N: Neuroblastoma 98.6 1.7E-05 3.7E-10 67.8 19.0 195 46-257 45-269 (282)
305 PF06433 Me-amine-dh_H: Methyl 98.6 6.6E-05 1.4E-09 66.9 23.2 241 48-297 39-326 (342)
306 KOG0309 Conserved WD40 repeat- 98.5 1.2E-06 2.6E-11 83.4 12.1 238 46-293 69-341 (1081)
307 KOG4714 Nucleoporin [Nuclear s 98.5 3.2E-06 7E-11 70.9 12.7 73 217-292 180-255 (319)
308 PF07433 DUF1513: Protein of u 98.5 0.00016 3.5E-09 63.8 23.7 197 92-296 9-252 (305)
309 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0005 1.1E-08 58.2 24.8 109 56-173 23-136 (354)
310 KOG2695 WD40 repeat protein [G 98.4 1.3E-06 2.8E-11 76.1 9.0 114 176-296 215-334 (425)
311 cd00216 PQQ_DH Dehydrogenases 98.4 0.0012 2.7E-08 64.1 29.8 231 57-296 111-429 (488)
312 PF04053 Coatomer_WDAD: Coatom 98.4 0.00013 2.8E-09 69.1 21.8 224 40-294 28-265 (443)
313 PF11768 DUF3312: Protein of u 98.3 5.3E-05 1.2E-09 71.2 17.9 84 214-302 257-340 (545)
314 KOG2695 WD40 repeat protein [G 98.3 2E-06 4.4E-11 74.9 7.8 142 56-207 225-378 (425)
315 PF03178 CPSF_A: CPSF A subuni 98.3 0.00091 2E-08 61.4 25.8 175 114-293 2-204 (321)
316 PF04841 Vps16_N: Vps16, N-ter 98.3 0.00071 1.5E-08 64.0 24.7 224 49-289 33-285 (410)
317 KOG1920 IkappaB kinase complex 98.3 0.00043 9.3E-09 70.3 23.2 196 85-293 66-276 (1265)
318 KOG2114 Vacuolar assembly/sort 98.2 0.00061 1.3E-08 66.8 23.0 198 51-256 30-252 (933)
319 KOG1275 PAB-dependent poly(A) 98.2 1.4E-05 2.9E-10 78.3 11.9 140 142-292 146-297 (1118)
320 PF03178 CPSF_A: CPSF A subuni 98.2 0.0028 6E-08 58.2 26.8 218 65-288 2-262 (321)
321 PRK02888 nitrous-oxide reducta 98.2 0.00045 9.8E-09 66.7 21.8 166 114-292 215-405 (635)
322 COG3386 Gluconolactonase [Carb 98.2 0.0026 5.6E-08 57.3 24.9 181 114-296 47-247 (307)
323 KOG3617 WD40 and TPR repeat-co 98.2 9.4E-05 2E-09 72.0 16.2 220 48-290 19-258 (1416)
324 KOG2066 Vacuolar assembly/sort 98.2 0.00011 2.4E-09 71.3 16.6 187 45-293 40-235 (846)
325 KOG1275 PAB-dependent poly(A) 98.2 6.2E-05 1.3E-09 73.8 15.1 176 57-245 148-340 (1118)
326 COG0823 TolB Periplasmic compo 98.2 7.2E-05 1.6E-09 70.5 15.3 189 87-283 192-391 (425)
327 KOG0882 Cyclophilin-related pe 98.2 2.2E-05 4.9E-10 70.9 10.9 198 98-301 19-241 (558)
328 COG0823 TolB Periplasmic compo 98.2 0.00028 6.1E-09 66.6 18.9 174 114-294 173-361 (425)
329 cd00216 PQQ_DH Dehydrogenases 98.2 0.0033 7.2E-08 61.2 27.0 192 56-256 61-328 (488)
330 KOG1832 HIV-1 Vpr-binding prot 98.1 1.9E-06 4.2E-11 83.7 4.0 214 39-279 1096-1319(1516)
331 KOG2114 Vacuolar assembly/sort 98.1 0.00065 1.4E-08 66.6 20.4 187 95-294 31-246 (933)
332 KOG1645 RING-finger-containing 98.1 0.00038 8.2E-09 62.3 16.4 240 39-292 188-462 (463)
333 COG5170 CDC55 Serine/threonine 98.0 6.1E-05 1.3E-09 65.0 10.7 157 132-292 171-368 (460)
334 PF08553 VID27: VID27 cytoplas 98.0 0.0014 3E-08 65.8 20.5 134 151-293 503-649 (794)
335 PF04053 Coatomer_WDAD: Coatom 97.9 0.0018 3.8E-08 61.5 19.8 218 86-389 31-263 (443)
336 COG3391 Uncharacterized conser 97.9 0.021 4.6E-07 53.6 27.3 237 46-296 32-288 (381)
337 PRK02888 nitrous-oxide reducta 97.9 0.0027 5.9E-08 61.5 20.1 187 50-248 198-405 (635)
338 COG3490 Uncharacterized protei 97.8 0.009 2E-07 51.6 20.2 224 48-288 71-345 (366)
339 PF00780 CNH: CNH domain; Int 97.8 0.016 3.4E-07 51.9 23.6 198 45-257 36-265 (275)
340 PF04841 Vps16_N: Vps16, N-ter 97.8 0.023 4.9E-07 53.9 25.4 168 115-294 62-249 (410)
341 KOG1645 RING-finger-containing 97.8 0.0011 2.4E-08 59.4 15.2 113 43-162 134-268 (463)
342 PF02897 Peptidase_S9_N: Proly 97.8 0.025 5.4E-07 53.9 25.5 242 46-295 125-408 (414)
343 COG3386 Gluconolactonase [Carb 97.8 0.029 6.3E-07 50.6 23.6 214 49-281 29-275 (307)
344 KOG1832 HIV-1 Vpr-binding prot 97.8 2.1E-05 4.6E-10 76.8 3.7 189 83-297 1097-1297(1516)
345 PF05694 SBP56: 56kDa selenium 97.7 0.02 4.4E-07 52.9 21.7 235 45-280 65-392 (461)
346 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.056 1.2E-06 50.7 27.0 79 216-296 307-403 (415)
347 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.0076 1.6E-07 56.1 18.9 230 44-279 42-345 (353)
348 PF11768 DUF3312: Protein of u 97.6 0.0062 1.3E-07 57.7 17.8 73 176-251 261-333 (545)
349 KOG3621 WD40 repeat-containing 97.6 0.002 4.4E-08 62.0 14.6 153 134-294 34-200 (726)
350 PF08596 Lgl_C: Lethal giant l 97.6 0.024 5.2E-07 53.1 21.6 235 46-296 3-295 (395)
351 PF06977 SdiA-regulated: SdiA- 97.6 0.039 8.5E-07 48.0 21.7 197 39-244 16-247 (248)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.088 1.9E-06 51.7 28.2 235 57-296 121-495 (527)
353 PF14870 PSII_BNR: Photosynthe 97.5 0.059 1.3E-06 48.4 29.6 234 43-295 15-264 (302)
354 KOG2066 Vacuolar assembly/sort 97.5 0.0079 1.7E-07 58.9 17.4 152 39-202 53-230 (846)
355 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.02 4.2E-07 53.3 19.5 170 114-295 23-222 (353)
356 KOG3621 WD40 repeat-containing 97.5 0.00056 1.2E-08 65.6 9.0 113 176-292 37-155 (726)
357 smart00320 WD40 WD40 repeats. 97.5 0.00045 9.9E-09 40.0 5.5 38 250-289 3-40 (40)
358 KOG4640 Anaphase-promoting com 97.4 0.00058 1.3E-08 64.7 8.4 77 217-297 21-98 (665)
359 PF14583 Pectate_lyase22: Olig 97.4 0.093 2E-06 48.2 23.4 220 49-282 40-303 (386)
360 KOG1897 Damage-specific DNA bi 97.4 0.18 4E-06 51.0 27.4 230 56-293 684-944 (1096)
361 PF08553 VID27: VID27 cytoplas 97.4 0.022 4.7E-07 57.5 19.4 129 114-246 504-646 (794)
362 smart00320 WD40 WD40 repeats. 97.4 0.00054 1.2E-08 39.7 5.4 37 208-245 4-40 (40)
363 KOG4499 Ca2+-binding protein R 97.4 0.062 1.3E-06 45.3 20.4 202 56-271 27-263 (310)
364 KOG4640 Anaphase-promoting com 97.4 0.00094 2E-08 63.4 8.9 94 175-271 21-115 (665)
365 PF02897 Peptidase_S9_N: Proly 97.4 0.15 3.1E-06 48.7 25.9 195 89-291 125-357 (414)
366 KOG1008 Uncharacterized conser 97.3 8.1E-05 1.7E-09 70.4 1.6 197 89-295 60-279 (783)
367 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.037 8.1E-07 41.0 14.9 65 219-290 2-70 (111)
368 PF06977 SdiA-regulated: SdiA- 97.3 0.096 2.1E-06 45.6 20.3 196 83-288 17-247 (248)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.2 4.4E-06 49.2 29.3 187 56-252 69-338 (527)
370 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.09 2E-06 45.0 21.3 32 52-83 101-133 (354)
371 KOG3617 WD40 and TPR repeat-co 97.3 0.00072 1.6E-08 66.2 7.4 110 180-293 21-133 (1416)
372 PF00780 CNH: CNH domain; Int 97.3 0.12 2.5E-06 46.2 22.2 221 54-300 5-264 (275)
373 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.033 7.2E-07 41.3 14.3 93 100-201 16-110 (111)
374 PRK13616 lipoprotein LpqB; Pro 97.2 0.031 6.8E-07 55.3 18.2 105 179-291 354-476 (591)
375 KOG2079 Vacuolar assembly/sort 97.1 0.0021 4.5E-08 64.8 8.9 104 187-294 100-206 (1206)
376 COG3391 Uncharacterized conser 97.1 0.23 5E-06 46.7 25.2 216 47-272 76-309 (381)
377 PF05096 Glu_cyclase_2: Glutam 97.0 0.19 4.2E-06 43.7 21.7 181 46-235 46-249 (264)
378 PF05096 Glu_cyclase_2: Glutam 96.9 0.27 5.8E-06 42.9 24.9 185 85-280 42-249 (264)
379 KOG2395 Protein involved in va 96.8 0.02 4.4E-07 53.6 11.3 137 151-293 355-502 (644)
380 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0072 1.5E-07 37.4 5.8 34 260-294 10-43 (47)
381 KOG2395 Protein involved in va 96.7 0.025 5.5E-07 53.0 11.8 138 100-246 347-499 (644)
382 PRK13616 lipoprotein LpqB; Pro 96.7 0.16 3.4E-06 50.5 18.2 188 44-239 349-561 (591)
383 PF14583 Pectate_lyase22: Olig 96.6 0.58 1.3E-05 43.2 25.6 242 49-292 85-382 (386)
384 PF06433 Me-amine-dh_H: Methyl 96.5 0.58 1.3E-05 42.4 23.9 198 48-257 98-330 (342)
385 COG3490 Uncharacterized protei 96.5 0.2 4.3E-06 43.6 14.9 161 122-282 56-246 (366)
386 KOG1008 Uncharacterized conser 96.5 0.00092 2E-08 63.5 0.6 198 43-247 55-275 (783)
387 COG3204 Uncharacterized protei 96.3 0.67 1.4E-05 40.7 17.5 167 40-212 81-270 (316)
388 PF12894 Apc4_WD40: Anaphase-p 96.2 0.019 4.1E-07 35.5 5.2 35 216-252 11-45 (47)
389 KOG2444 WD40 repeat protein [G 96.1 0.02 4.3E-07 47.9 6.5 101 192-295 75-181 (238)
390 KOG1897 Damage-specific DNA bi 96.1 2 4.3E-05 44.0 27.1 244 43-296 529-820 (1096)
391 COG3823 Glutamine cyclotransfe 96.1 0.26 5.6E-06 40.9 12.7 103 56-165 56-163 (262)
392 PF08596 Lgl_C: Lethal giant l 96.0 0.17 3.8E-06 47.5 13.3 80 210-291 80-173 (395)
393 KOG4499 Ca2+-binding protein R 96.0 0.83 1.8E-05 38.7 18.7 103 219-378 160-274 (310)
394 TIGR03118 PEPCTERM_chp_1 conse 95.9 1.2 2.6E-05 39.5 20.3 221 43-297 21-285 (336)
395 PF14870 PSII_BNR: Photosynthe 95.4 2 4.2E-05 38.8 25.5 191 86-289 15-213 (302)
396 PF15390 DUF4613: Domain of un 95.3 3.1 6.8E-05 40.3 20.2 114 41-159 53-185 (671)
397 TIGR03074 PQQ_membr_DH membran 95.2 4.6 9.9E-05 41.6 23.1 193 56-255 194-485 (764)
398 PRK10115 protease 2; Provision 95.0 5 0.00011 41.1 28.6 240 45-294 127-397 (686)
399 KOG2079 Vacuolar assembly/sort 95.0 0.91 2E-05 46.8 14.5 99 55-159 98-202 (1206)
400 COG3823 Glutamine cyclotransfe 94.8 2 4.3E-05 35.9 13.8 168 99-279 56-247 (262)
401 COG5167 VID27 Protein involved 94.8 0.55 1.2E-05 44.3 11.8 142 143-293 477-634 (776)
402 PF12234 Rav1p_C: RAVE protein 94.8 1.4 3.1E-05 43.6 15.2 100 189-291 43-156 (631)
403 PF14727 PHTB1_N: PTHB1 N-term 94.6 4.1 8.9E-05 38.5 26.2 143 98-246 36-203 (418)
404 KOG2280 Vacuolar assembly/sort 94.4 3.2 7E-05 41.3 16.4 211 50-272 38-270 (829)
405 PF07995 GSDH: Glucose / Sorbo 94.4 4.1 8.9E-05 37.5 26.5 234 46-286 3-330 (331)
406 PHA02713 hypothetical protein; 94.3 6.3 0.00014 39.2 20.7 63 227-294 463-536 (557)
407 COG3204 Uncharacterized protei 94.3 3.6 7.8E-05 36.3 18.6 230 48-286 46-307 (316)
408 PF12234 Rav1p_C: RAVE protein 94.2 3.1 6.6E-05 41.4 16.0 73 217-291 30-104 (631)
409 KOG3630 Nuclear pore complex, 94.1 0.69 1.5E-05 47.9 11.5 143 133-278 100-260 (1405)
410 PF08728 CRT10: CRT10; InterP 94.0 3.5 7.7E-05 41.4 16.2 105 184-291 112-246 (717)
411 PF10647 Gmad1: Lipoprotein Lp 93.9 4.2 9.1E-05 35.8 20.8 115 178-295 27-148 (253)
412 PRK10115 protease 2; Provision 93.8 8.9 0.00019 39.3 23.2 202 87-291 126-344 (686)
413 PF07569 Hira: TUP1-like enhan 93.8 0.37 8E-06 41.3 8.1 79 269-389 18-96 (219)
414 PF10313 DUF2415: Uncharacteri 93.7 0.25 5.5E-06 29.6 4.7 31 263-293 2-35 (43)
415 KOG1916 Nuclear protein, conta 93.6 0.13 2.9E-06 51.5 5.6 178 114-296 111-328 (1283)
416 PF10168 Nup88: Nuclear pore c 93.6 1 2.2E-05 45.7 11.9 78 216-295 84-183 (717)
417 PF10313 DUF2415: Uncharacteri 93.5 0.43 9.2E-06 28.7 5.6 32 217-249 1-35 (43)
418 PF10647 Gmad1: Lipoprotein Lp 93.5 4.9 0.00011 35.3 21.7 159 46-212 25-204 (253)
419 KOG4441 Proteins containing BT 93.5 8.9 0.00019 38.2 18.5 190 99-293 285-501 (571)
420 PF05694 SBP56: 56kDa selenium 93.4 7.2 0.00016 36.7 24.8 192 99-296 88-347 (461)
421 PRK13684 Ycf48-like protein; P 92.9 7.6 0.00016 35.8 30.8 233 44-294 45-290 (334)
422 PF07569 Hira: TUP1-like enhan 92.9 0.8 1.7E-05 39.3 8.7 68 224-293 18-97 (219)
423 PF02333 Phytase: Phytase; In 92.8 8.3 0.00018 35.9 20.5 187 97-293 66-292 (381)
424 TIGR02604 Piru_Ver_Nterm putat 92.6 7.8 0.00017 36.3 15.7 140 134-282 14-204 (367)
425 KOG2444 WD40 repeat protein [G 92.4 0.4 8.6E-06 40.4 6.0 99 56-160 70-177 (238)
426 COG5167 VID27 Protein involved 92.4 4.2 9.2E-05 38.7 13.0 143 95-247 475-632 (776)
427 PF15390 DUF4613: Domain of un 92.3 3.6 7.8E-05 39.9 12.7 114 134-247 57-186 (671)
428 KOG2280 Vacuolar assembly/sort 92.2 3.7 8E-05 40.9 13.0 75 31-106 71-146 (829)
429 COG4880 Secreted protein conta 91.6 8.5 0.00018 35.9 13.8 169 114-294 406-595 (603)
430 PF05935 Arylsulfotrans: Aryls 91.5 14 0.00031 35.9 16.7 137 151-295 127-305 (477)
431 KOG4441 Proteins containing BT 91.3 17 0.00037 36.3 20.5 232 54-294 283-549 (571)
432 KOG2377 Uncharacterized conser 90.6 2.5 5.4E-05 39.6 9.6 102 40-149 62-169 (657)
433 PF07676 PD40: WD40-like Beta 90.0 1.1 2.4E-05 26.1 4.8 30 41-70 5-38 (39)
434 PHA02713 hypothetical protein; 90.0 16 0.00035 36.4 15.6 25 227-252 512-538 (557)
435 TIGR02276 beta_rpt_yvtn 40-res 89.8 2.3 5.1E-05 25.0 6.3 32 226-258 1-33 (42)
436 PF07250 Glyoxal_oxid_N: Glyox 89.7 6.1 0.00013 34.4 10.8 140 114-257 46-207 (243)
437 KOG1900 Nuclear pore complex, 89.2 5.4 0.00012 42.4 11.7 132 114-248 99-273 (1311)
438 KOG1900 Nuclear pore complex, 89.1 11 0.00023 40.4 13.7 143 147-293 94-274 (1311)
439 PF03022 MRJP: Major royal jel 89.1 17 0.00036 32.7 21.8 164 114-279 34-253 (287)
440 PF10168 Nup88: Nuclear pore c 89.0 16 0.00034 37.5 14.7 29 263-292 86-114 (717)
441 COG3292 Predicted periplasmic 88.9 24 0.00052 34.4 15.9 237 42-292 162-405 (671)
442 PF12657 TFIIIC_delta: Transcr 88.0 6.6 0.00014 32.2 9.7 29 361-389 87-122 (173)
443 KOG0783 Uncharacterized conser 87.9 6.3 0.00014 40.0 10.7 31 133-163 228-259 (1267)
444 PF08801 Nucleoporin_N: Nup133 87.8 25 0.00055 33.5 15.0 30 263-292 191-220 (422)
445 TIGR03074 PQQ_membr_DH membran 87.2 40 0.00087 35.0 23.5 182 114-297 204-483 (764)
446 PLN00033 photosystem II stabil 86.9 28 0.00061 32.9 29.8 108 180-294 244-358 (398)
447 PF14781 BBS2_N: Ciliary BBSom 86.8 13 0.00028 28.9 13.2 112 48-165 2-130 (136)
448 KOG4460 Nuclear pore complex, 86.7 18 0.0004 34.8 12.5 94 218-316 105-220 (741)
449 PF14269 Arylsulfotran_2: Aryl 86.0 26 0.00057 31.7 18.2 72 218-291 145-220 (299)
450 PF07250 Glyoxal_oxid_N: Glyox 86.0 13 0.00029 32.3 10.7 139 154-296 48-202 (243)
451 COG3292 Predicted periplasmic 86.0 36 0.00078 33.3 14.8 130 114-249 354-493 (671)
452 KOG2247 WD40 repeat-containing 86.0 0.11 2.5E-06 48.5 -2.0 141 88-239 35-181 (615)
453 PF12657 TFIIIC_delta: Transcr 85.6 8.3 0.00018 31.6 9.0 31 217-248 86-122 (173)
454 KOG1983 Tomosyn and related SN 85.1 22 0.00049 38.0 13.9 73 214-295 196-268 (993)
455 PRK13684 Ycf48-like protein; P 85.0 32 0.00069 31.7 24.0 150 133-289 172-329 (334)
456 PF05935 Arylsulfotrans: Aryls 84.9 40 0.00087 32.8 18.6 188 97-294 113-370 (477)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 84.3 15 0.00031 34.9 10.9 37 39-75 302-339 (415)
458 PF14781 BBS2_N: Ciliary BBSom 84.0 18 0.00039 28.1 12.2 70 222-296 4-86 (136)
459 KOG3616 Selective LIM binding 83.8 16 0.00034 36.8 11.0 32 43-74 13-45 (1636)
460 PF11715 Nup160: Nucleoporin N 83.6 4.1 8.8E-05 40.5 7.6 33 263-295 216-252 (547)
461 PF14761 HPS3_N: Hermansky-Pud 83.3 27 0.00058 29.6 13.8 50 229-282 29-80 (215)
462 COG1520 FOG: WD40-like repeat 82.8 42 0.0009 31.4 22.9 194 53-257 66-278 (370)
463 KOG2247 WD40 repeat-containing 82.5 0.21 4.6E-06 46.7 -1.8 139 140-286 41-183 (615)
464 TIGR02604 Piru_Ver_Nterm putat 82.2 44 0.00096 31.2 17.6 149 89-237 15-204 (367)
465 PF02333 Phytase: Phytase; In 82.1 44 0.00096 31.2 18.6 154 187-394 69-243 (381)
466 PF03088 Str_synth: Strictosid 81.6 15 0.00032 26.4 7.7 42 235-280 34-75 (89)
467 TIGR02276 beta_rpt_yvtn 40-res 80.2 8.9 0.00019 22.4 5.5 29 54-82 1-31 (42)
468 PF07676 PD40: WD40-like Beta 80.2 6.3 0.00014 22.8 4.7 32 212-244 4-38 (39)
469 PF10214 Rrn6: RNA polymerase 79.8 83 0.0018 32.9 18.6 78 214-293 77-178 (765)
470 COG4590 ABC-type uncharacteriz 79.0 17 0.00037 34.3 9.0 159 132-296 219-391 (733)
471 PF10214 Rrn6: RNA polymerase 79.0 88 0.0019 32.7 17.9 112 44-161 145-277 (765)
472 TIGR02171 Fb_sc_TIGR02171 Fibr 76.5 20 0.00043 37.2 9.5 85 189-275 321-412 (912)
473 smart00564 PQQ beta-propeller 76.2 8.2 0.00018 21.2 4.2 25 230-255 8-32 (33)
474 COG5276 Uncharacterized conser 74.6 64 0.0014 28.9 25.3 189 90-294 89-288 (370)
475 KOG3630 Nuclear pore complex, 74.3 35 0.00076 36.2 10.5 137 88-233 101-260 (1405)
476 PF08728 CRT10: CRT10; InterP 74.2 1.1E+02 0.0024 31.4 15.9 144 56-204 49-245 (717)
477 PF14779 BBS1: Ciliary BBSome 73.7 14 0.00031 32.3 6.8 56 274-385 196-255 (257)
478 PHA03098 kelch-like protein; P 73.3 1E+02 0.0022 30.6 19.7 23 227-250 487-514 (534)
479 KOG1898 Splicing factor 3b, su 73.3 1.3E+02 0.0029 31.9 18.1 136 153-294 854-1007(1205)
480 KOG1898 Splicing factor 3b, su 72.9 1.3E+02 0.0029 31.9 17.5 130 113-247 911-1048(1205)
481 PLN00033 photosystem II stabil 72.7 88 0.0019 29.7 25.7 144 136-288 241-396 (398)
482 KOG1896 mRNA cleavage and poly 72.4 1.5E+02 0.0032 32.1 20.0 176 114-294 1004-1216(1366)
483 PF01011 PQQ: PQQ enzyme repea 71.6 17 0.00037 20.9 4.9 28 230-258 2-29 (38)
484 KOG1916 Nuclear protein, conta 71.4 3.6 7.7E-05 42.0 2.9 76 216-295 180-269 (1283)
485 PF09826 Beta_propel: Beta pro 71.4 1.1E+02 0.0024 30.2 22.0 170 112-293 302-520 (521)
486 COG4257 Vgb Streptogramin lyas 71.2 75 0.0016 28.2 16.3 196 91-294 65-265 (353)
487 COG5276 Uncharacterized conser 71.2 78 0.0017 28.4 23.2 222 54-291 136-369 (370)
488 PHA03098 kelch-like protein; P 71.1 1.1E+02 0.0024 30.2 19.6 65 227-294 437-514 (534)
489 PF14157 YmzC: YmzC-like prote 70.1 28 0.0006 22.8 6.2 35 365-400 24-58 (63)
490 PF11715 Nup160: Nucleoporin N 69.9 12 0.00026 37.2 6.4 39 218-257 216-258 (547)
491 COG5290 IkappaB kinase complex 69.6 80 0.0017 32.4 11.4 140 48-190 205-354 (1243)
492 KOG4460 Nuclear pore complex, 69.3 96 0.0021 30.2 11.4 27 45-71 104-131 (741)
493 PF10433 MMS1_N: Mono-function 68.5 1.2E+02 0.0027 29.7 22.6 230 53-295 219-480 (504)
494 PF03022 MRJP: Major royal jel 68.1 91 0.002 28.0 17.4 155 136-294 3-218 (287)
495 PHA02790 Kelch-like protein; P 67.7 1.3E+02 0.0027 29.5 18.2 63 226-294 406-473 (480)
496 KOG2377 Uncharacterized conser 66.5 1.2E+02 0.0027 28.9 15.3 120 48-173 26-154 (657)
497 KOG3611 Semaphorins [Signal tr 66.4 89 0.0019 32.2 11.5 72 216-287 407-489 (737)
498 PF01436 NHL: NHL repeat; Int 64.8 17 0.00038 19.3 3.6 25 264-288 4-28 (28)
499 KOG2109 WD40 repeat protein [G 62.6 7.9 0.00017 38.1 3.3 79 204-284 303-391 (788)
500 PF14761 HPS3_N: Hermansky-Pud 60.9 1E+02 0.0023 26.2 16.4 36 114-149 38-75 (215)
No 1
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=4.4e-44 Score=300.17 Aligned_cols=332 Identities=61% Similarity=0.996 Sum_probs=301.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
...+++|+.|...+++|.|..++||++++.++.....+..+...++.|.|..+...|++|+..|.|+.+.|.|||-...+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 35569999999999999999999999999888777766677788999999999999999999999999999999988899
Q ss_pred EEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc
Q 015198 126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF 204 (411)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~ 204 (411)
++.++.+..+|.++.+.++...++..+.|++|... +.+.++.+....+|-..+++.+..+..+||+.|..-|.|+|-+.
T Consensus 87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 99999999999999999999999999999999997 67899999988888899999999999999999999999999555
Q ss_pred CCcc---eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC
Q 015198 205 GLNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (411)
Q Consensus 205 ~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (411)
.... ...+.+|...|.|++++-+|.++|++|..|+.|||||..+|+++++++.+...+.|.+|+|||++.+||++++
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence 4433 4788999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 015198 282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT 361 (411)
Q Consensus 282 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (411)
.|+|+||.++.....++ ..+++++....+|+|++++|++++|++|.+.
T Consensus 247 KgTlHiF~l~~~~~~~~--------------------------------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~ 294 (346)
T KOG2111|consen 247 KGTLHIFSLRDTENTED--------------------------------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT 294 (346)
T ss_pred CCeEEEEEeecCCCCcc--------------------------------ccccccccccccchhcccceeEEEEEccCCC
Confidence 99999999988664431 1144555556899999999999999999999
Q ss_pred eEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccCCC
Q 015198 362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSR 409 (411)
Q Consensus 362 ~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (411)
+++|+|..+ +.+++.|.||.+|.+.++++++|+|.+..|..|++..+.
T Consensus 295 ~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~~ 343 (346)
T KOG2111|consen 295 QCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQDD 343 (346)
T ss_pred cEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhhhheeecccC
Confidence 999999999 999999999999999999999999999999988877654
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-42 Score=296.89 Aligned_cols=278 Identities=13% Similarity=0.209 Sum_probs=238.2
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.+.||.++|.|++|+|+|+.|++|+ |.++|+||+++....... ++|...+.++.|+||+..+++|+.| |.|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--KgH~~WVlcvawsPDgk~iASG~~d-----g~I~ 182 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KGHKNWVLCVAWSPDGKKIASGSKD-----GSIR 182 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee--cCCccEEEEEEECCCcchhhccccC-----CeEE
Confidence 4789999999999999999999999 999999999986555544 4999999999999999999999998 9999
Q ss_pred EEECCCCcEEEE-Ee-ecCceeEEEEcC-----CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 118 IWDDHQSRCIGE-FA-FRSDVRSVKLSR-----DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 118 vwd~~~~~~~~~-~~-~~~~i~~~~~~~-----~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
+||.++|+++.. +. |...|++++|.| ..+.++ .||.|+|||+..++++..+.+|..+++ |+.+-+++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT--CvrwGG~g- 259 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT--CVRWGGEG- 259 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE--EEEEcCCc-
Confidence 999999987644 55 999999999975 455666 799999999999999999999998554 45555444
Q ss_pred EEEEecCCCCeEEEEEcCC-------------------------------------------------------------
Q 015198 188 VLACPGLQRGQVRIEHFGL------------------------------------------------------------- 206 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~------------------------------------------------------------- 206 (411)
++++|+.|++|++|....
T Consensus 260 -liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred -eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 456788888888876532
Q ss_pred -------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 207 -------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 207 -------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
+++..+.+|..-|+.+.|+||++++|+++-|.. |++||.++|+.+.+|++ |-+.|+.+
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqv 415 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQV 415 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEE
Confidence 223345678899999999999999999999999 99999999999999999 88999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (411)
Q Consensus 268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (411)
+|+.|.++|++|+.|.+++||++++.+-..++..|++
T Consensus 416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D------------------------------------------- 452 (480)
T KOG0271|consen 416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD------------------------------------------- 452 (480)
T ss_pred EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc-------------------------------------------
Confidence 9999999999999999999999999998777776633
Q ss_pred cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198 348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~ 386 (411)
.++.+-|+|+ ++++.++.|-.+++|.
T Consensus 453 -------------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 -------------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------------eEEEEEecCCCceeecCCCceEEEeec
Confidence 6778899999 5566666688887774
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=271.88 Aligned_cols=339 Identities=33% Similarity=0.559 Sum_probs=289.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
....+..+.|+.+...|.+|+....++|+.++..+..... .....|+.+.|+....++++..+- +.+++.+++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K 76 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK 76 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence 3456788889999999999996667999999877755443 678899999999999999998554 899999999
Q ss_pred CCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEecc-CCCcceEEEccCCCceEEEEecCC-CCeEE
Q 015198 123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQ-RGQVR 200 (411)
Q Consensus 123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-dg~i~ 200 (411)
.+..++.+.+...|.++.++.+...++....|+|||+++.++++++..- .++...++++++..+.++|+.++. .|.|.
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999999999999998888999999999999999765 677789999999999999997754 58899
Q ss_pred EEE-cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198 201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (411)
||+ .+.+.+..+..|++++.+++|+++|.+||++++.|+.||||.+.+|+.+++|+.+.....|.+++|+||+++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 965 5568889999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred eCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCC
Q 015198 280 SDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE 359 (411)
Q Consensus 280 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (411)
++.++|+||++++.... +++++..+.+- .+.-.....+++|.++.++++.+|.|++.++|.
T Consensus 237 S~TeTVHiFKL~~~~~~-----------~~~~p~~~~~~--------~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~ 297 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNN-----------PPESPTAGTSW--------FGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE 297 (391)
T ss_pred cCCCeEEEEEecccccC-----------CCCCCCCCCcc--------cchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence 99999999999987622 22222222222 222222333488888889999999999999998
Q ss_pred Cc-eEEEEEccC---CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccC
Q 015198 360 VT-HFIAAFGSQ---NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTV 407 (411)
Q Consensus 360 ~~-~~~~~~~~~---~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (411)
.. ...|.+.+. .++.+++.||.+|.|.+++++||||.+++.+.|....
T Consensus 298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~ 349 (391)
T KOG2110|consen 298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI 349 (391)
T ss_pred CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence 55 477888752 9999999999999999999999999999988887643
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=269.77 Aligned_cols=284 Identities=16% Similarity=0.151 Sum_probs=246.6
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEecCCCCC
Q 015198 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQ 110 (411)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~ 110 (411)
+.+.....+-+.+|..+.|+.|++.|++|+ +|.++||+......+ ..|.+|...+.++.|+|. ...+++++.|
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccC--
Confidence 334455667889999999999999999999 999999999876433 345699999999999996 6789999998
Q ss_pred CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
|++++|++.+...+..+. |...|..++|+|+|++++ .|.+-++||+++++.+...++|...+..++|. ++|
T Consensus 241 ---gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~--~DG 315 (459)
T KOG0272|consen 241 ---GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ--PDG 315 (459)
T ss_pred ---CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec--CCC
Confidence 999999999989999988 899999999999999999 79999999999999888889998865555554 455
Q ss_pred eEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
.++ ++|+.|..-+||+.+ ++++..+.+|..+|..++|+|+|..||+|+.|++ ++|||++..+.+.++.+ |..-|+
T Consensus 316 SL~-~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS 391 (459)
T KOG0272|consen 316 SLA-ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVS 391 (459)
T ss_pred cee-eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhh
Confidence 554 568899999998754 6889999999999999999999999999999999 99999999999999988 889999
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198 266 SIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (411)
Q Consensus 266 ~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (411)
.+.|+| .|.+|++++.|++++||.-.+..+.+.+.+|
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH------------------------------------------ 429 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH------------------------------------------ 429 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcCC------------------------------------------
Confidence 999998 7889999999999999999999988755555
Q ss_pred ccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198 345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~ 386 (411)
++-+..|..+++ .-|++++.|-.+..|.
T Consensus 430 --------------e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 --------------EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------ccceEEEEeccCCceEEEeccCceeeecc
Confidence 234566788888 5577777799999884
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-35 Score=241.07 Aligned_cols=294 Identities=14% Similarity=0.184 Sum_probs=238.4
Q ss_pred CccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceE---EeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (411)
+...+.+|.+.|+.++..+.+ +.|++++ |..+.+|++......+ .+.+.+|...+..+..++++.+.++++.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD-- 84 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD-- 84 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc--
Confidence 345688999999999999884 5666777 9999999997543333 45567889999999999999999999998
Q ss_pred CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc--CCCcceEEEccCC
Q 015198 111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHS 184 (411)
Q Consensus 111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~ 184 (411)
+.+++||+.+++..+.|. |...|.+++|++|.+.++ .|.+|++|++... +..++... .+-+.+++|+|+.
T Consensus 85 ---~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 85 ---GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ---ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence 999999999999988887 999999999999999888 7999999998654 44444333 4555666666666
Q ss_pred CceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198 185 STSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
...+|+. ++.|++|++|+.+.. ....+.+|.+.++.++++|||.++++|+.||. +.+||++.++.++.+. +...
T Consensus 161 ~~p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~ 235 (315)
T KOG0279|consen 161 SNPIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDI 235 (315)
T ss_pred CCcEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCe
Confidence 5677765 679999999998874 45667899999999999999999999999999 9999999999988887 6779
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (411)
|.+++|+|+..+|+.+...+ |+|||+.++.+.+++..+.. ++
T Consensus 236 v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~-------------------------g~------------ 277 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGI-------------------------GP------------ 277 (315)
T ss_pred EeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccc-------------------------cc------------
Confidence 99999999988887776655 99999999998875554411 00
Q ss_pred cccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
.-+.....-..++|+++ ..|+++-.|+.+.+|++.
T Consensus 278 ----------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 ----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 01111122345899999 778888889999999875
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=237.82 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=245.2
Q ss_pred CCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 33 ~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
.+.....+.+|.+.|+++.|++|.++|++++ ||.+.|||.-+..+..... -....+...+|+|++.+++.|+-|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLd--- 118 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLD--- 118 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcC---
Confidence 3444467899999999999999999999999 9999999998866665555 467889999999999999999998
Q ss_pred CCCeEEEEECCCC------cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198 112 PPTKVIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 112 ~d~~i~vwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (411)
+...||++.+. ...+++. |.+-+.+..|-+|+.++. .|.+.-+||+++++.+..+.+|...+..+.++|
T Consensus 119 --N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 119 --NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred --ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 99999998754 2334454 899999999999998888 799999999999999999999998766666666
Q ss_pred CCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198 183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (411)
+ +++.++ +|+-|+..+||+.+ +.+++.|.+|+..|+++.|.|+|.-+++|++|+. .|+||++..+.+..+......
T Consensus 197 ~-~~ntFv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 197 S-DGNTFV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred C-CCCeEE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCccc
Confidence 4 455655 47789999998865 5789999999999999999999999999999999 999999999999888865556
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV 341 (411)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (411)
.+|++++||..|++|.+|..|.++.|||.-.++....+..|
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--------------------------------------- 314 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--------------------------------------- 314 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc---------------------------------------
Confidence 79999999999999999999999999999888765433333
Q ss_pred cCcccccccceEEEEeCCCceEEEEEccCCEEEEEEe-CCcEEEEE
Q 015198 342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCS 386 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~ 386 (411)
+..+.++..+|++..++.++ |..++||.
T Consensus 315 -----------------eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 -----------------ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34567788899977666666 99999984
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=262.79 Aligned_cols=242 Identities=15% Similarity=0.160 Sum_probs=218.5
Q ss_pred CCccccCCCCCCeEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
+....+.+|.+.|.++.|+|. +..||+|+ ||++++|++++...+ ..+.+|...+..+.|+|+|.+|++++.|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~gH~~RVs~VafHPsG~~L~TasfD--- 282 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLEGHLARVSRVAFHPSGKFLGTASFD--- 282 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhhcchhhheeeeecCCCceeeecccc---
Confidence 566778999999999999997 66899999 999999999864433 3355899999999999999999999998
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
.+-++||+.++..+.... |...|.+++|.+||.+++ .|..-+|||+++|+++..+.+|.. .+..++|+|+|.
T Consensus 283 --~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k--~I~~V~fsPNGy 358 (459)
T KOG0272|consen 283 --STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK--EILSVAFSPNGY 358 (459)
T ss_pred --cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc--ceeeEeECCCce
Confidence 999999999998777666 999999999999999999 789999999999999999999888 556666677777
Q ss_pred EEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
.||+ |+.|++++||+.+. ..+..+.+|..-|+.+.|+| .|.+|++++.|++ ++||...++.+++.+.+ |.+.|.
T Consensus 359 ~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~ 434 (459)
T KOG0272|consen 359 HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVI 434 (459)
T ss_pred EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceE
Confidence 7775 88999999999876 56788899999999999998 7889999999999 99999999999999999 899999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
++.+++|++++++++.|++|++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999995
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=251.97 Aligned_cols=242 Identities=16% Similarity=0.253 Sum_probs=210.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-----CeEEEEecCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-----NILALVGAGDNSQY 111 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~~ 111 (411)
....+|...|.|++|+|||+.||+|+ ||.|++||.++++++ -..|.+|...|.+++|.| ....+++++.|
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skD--- 226 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKD--- 226 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCC---
Confidence 34689999999999999999999999 999999999886654 445779999999999875 56789999988
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCc-------------
Q 015198 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR------------- 175 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~------------- 175 (411)
|.++|||+..++++..+. |..+|+|++|-.++.+.. .|++|++|+...|++.+.+++|.+.+
T Consensus 227 --g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 227 --GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred --CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999999999999988 999999999998887776 89999999987776665555443322
Q ss_pred ----------------------------------------------------------------ceEEEccCCCceEEEE
Q 015198 176 ----------------------------------------------------------------GLCCLSHHSSTSVLAC 191 (411)
Q Consensus 176 ----------------------------------------------------------------~~~~~~~~~~~~~l~~ 191 (411)
-+..+.++|++.++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 1233456677888875
Q ss_pred ecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 192 PGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 192 ~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
++-|..|++|+- +++.+..|.+|-++|+.++|+.|.++|++|+.|.+ +++||+++.++...+.+ |...|.++.|+
T Consensus 385 -aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDws 460 (480)
T KOG0271|consen 385 -ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWS 460 (480)
T ss_pred -eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEec
Confidence 678999999874 56888999999999999999999999999999999 99999999999999998 88899999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 015198 271 PNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd 289 (411)
|||+.+++|+.|..+++|.
T Consensus 461 pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceeecCCCceEEEeec
Confidence 9999999999999999995
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=232.58 Aligned_cols=253 Identities=18% Similarity=0.219 Sum_probs=217.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
-.++.|+.+.+.||++.||+++...||+||+.+....-...+..+...+..+.|..++..+.+|++| |+++|||+
T Consensus 38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdl 112 (311)
T KOG0315|consen 38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDL 112 (311)
T ss_pred cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEec
Confidence 3467899999999999999999999999999987665556666888999999999999999999999 99999999
Q ss_pred CCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
+.-.+-+.+++..+|+++..+|+..-++ .+|.|++||+....+.+.+-... ...+..+...+++.+++. +...|.
T Consensus 113 R~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a-~nnkG~ 190 (311)
T KOG0315|consen 113 RSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAA-ANNKGN 190 (311)
T ss_pred cCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEE-ecCCcc
Confidence 9988888899999999999999765555 68999999998876666664332 245666777777788876 568899
Q ss_pred EEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeC
Q 015198 199 VRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 199 i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~s 270 (411)
.++|+... .++..++.|++.+..+.+|||+++||+++.|.+ ++||++++. +....+.+ |...++..+||
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~FS 267 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAFS 267 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeeec
Confidence 99998754 456778999999999999999999999999999 999999887 55556666 78899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCC
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLS 304 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~ 304 (411)
.||+||++|+.|+.+++|++..+++......|.+
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 9999999999999999999999998887777744
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=242.68 Aligned_cols=257 Identities=13% Similarity=0.188 Sum_probs=226.7
Q ss_pred CCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 33 ~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
.+++.....+|..+|+.+-|+|+-..+++++ |++|++||..+++. ...+++|...+..+.|+..+.++++++.|
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsD--- 171 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSD--- 171 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCc---
Confidence 3355567888999999999999999999998 99999999998664 45567898899999999999999999998
Q ss_pred CCCeEEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 112 PPTKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 112 ~d~~i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
-.+++||..+ .++++.+. |...|.++.|-|.|.+++ .|.+|+.|++.++-++.++.+|.. .+..+.++.||
T Consensus 172 --l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DG 247 (406)
T KOG0295|consen 172 --LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDG 247 (406)
T ss_pred --cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCe
Confidence 7799999877 45565554 899999999999998888 799999999999999999999987 77778888888
Q ss_pred eEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCC---------------CCEEEEEcCCCeEEEEEECCCCc
Q 015198 187 SVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD---------------GLLLATASTRGTLIRIFNTVDGT 250 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~---------------g~~l~s~s~dg~~I~vwd~~~~~ 250 (411)
.++|+ ++.|.+|++|.... .+...+..|+.+|.+++|.|. ++++.+++.|+. |++||+.++.
T Consensus 248 ti~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~ 325 (406)
T KOG0295|consen 248 TIIAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGM 325 (406)
T ss_pred eEEEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCe
Confidence 88775 77999999998765 467788999999999999773 369999999999 9999999999
Q ss_pred eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
++.++.+ |...|..++|+|.|+||+++.+|+++++||++++++...+..|
T Consensus 326 cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 326 CLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 9999999 8899999999999999999999999999999999988654444
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-32 Score=241.62 Aligned_cols=276 Identities=20% Similarity=0.296 Sum_probs=236.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
.....|++|+|+.+|.+||+|. ||.++||+... ... ..+..|...|.++.|+..+.++++++-| +++.+||
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd 304 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILWD 304 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEEe
Confidence 3456899999999999999999 99999999875 322 3356889999999999999999999998 9999999
Q ss_pred CCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
..+++..+.+. |..+-..+.|-.+..++. .|+.|+++.+....++.++.+|.+ .+.++.+++.+.+|++ ++.|+
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS-~SdD~ 381 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLAS-CSDDG 381 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEE-ecCCC
Confidence 99999999998 566668899988888887 799999999998899999999888 5566777777778875 67999
Q ss_pred eEEEEEc-CCcceEEEeccccceeEEEecCCC---------CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 198 QVRIEHF-GLNMIKLINAHDSHIACFTLTLDG---------LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 198 ~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g---------~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
+++||.. +......+.+|...|+.+.|+|.| ..|++++.|+. |++||+..+.+++.|.. |..+|+++
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysv 458 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSV 458 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEE
Confidence 9999994 557788899999999999999965 47899999999 99999999999999988 88999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS 347 (411)
Q Consensus 268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (411)
+|+|+|++||+|+.||.|.+|++++++.-+..
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~------------------------------------------------ 490 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY------------------------------------------------ 490 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchheeEee------------------------------------------------
Confidence 99999999999999999999999999844211
Q ss_pred cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
...+.+..++|+.+ +.|.++-+||.+.+..|.
T Consensus 491 ---------~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 ---------QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ---------cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 11245677889988 677777779988887653
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=225.51 Aligned_cols=285 Identities=16% Similarity=0.222 Sum_probs=235.3
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
+.....+.+|++.|+.+.|+|+|.+||+|+ |..|.+|+.....+.+-. +++|...|..+.|..++..+++++.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkgHsgAVM~l~~~~d~s~i~S~gtD---- 111 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKGHSGAVMELHGMRDGSHILSCGTD---- 111 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-eccccceeEeeeeccCCCEEEEecCC----
Confidence 334456889999999999999999999999 999999997653433332 45899999999999999999999998
Q ss_pred CCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
.+|+.||.++|++++.++ |..-|+++.-+.-|..++ .|+++++||+++...++.+... ....++.+...+.
T Consensus 112 -k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~ 187 (338)
T KOG0265|consen 112 -KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSD 187 (338)
T ss_pred -ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEeccccc
Confidence 999999999999999998 888888888666666665 7999999999988888777433 3566677766666
Q ss_pred EEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----CceEEEEeCCCCCc
Q 015198 188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----GTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----~~~~~~~~~~~~~~ 262 (411)
.+++ |.-|+.|++|+.. ......+.+|..+|+.+..+++|.++.+-+.|.. +++||++- ..++..+.++.|.-
T Consensus 188 qv~s-ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 188 QVIS-GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ceee-ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhh
Confidence 6665 6699999999875 4667888999999999999999999999999999 99999874 34577787765543
Q ss_pred --ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccc
Q 015198 263 --EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG 340 (411)
Q Consensus 263 --~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (411)
....++|+|+++.+.+|+.|..+++||.......
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l-------------------------------------------- 301 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL-------------------------------------------- 301 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEE--------------------------------------------
Confidence 4457799999999999999999999998876643
Q ss_pred ccCcccccccceEEEEeCC--CceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198 341 VLPKYFSSEWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~dg~~~~~~~ 387 (411)
.++|. +.+..+.|+|. .-|+.+++|-.+|.-++
T Consensus 302 --------------yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 --------------YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred --------------EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 33333 67888999998 77888888999887654
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=248.41 Aligned_cols=301 Identities=14% Similarity=0.260 Sum_probs=239.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
..+.-...+|..++|+..|.+||.|+ -|.+.||++....-++++ ++|-..+.++.++||+.++++|++| |.
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eD-----gK 373 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ--QGHSDRITSLAYSPDGQLIATGAED-----GK 373 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec--cccccceeeEEECCCCcEEEeccCC-----Cc
Confidence 33455567899999999999999999 579999999875545544 4889999999999999999999998 99
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
|+|||..++-|+.++. |...|+.+.|+..++.++ .||+|+.||+...+..+++..+ .++...+++.++.|.++++
T Consensus 374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe
Confidence 9999999999999998 999999999999998888 7999999999999988888764 4577888888888877765
Q ss_pred ecCCC-CeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEE
Q 015198 192 PGLQR-GQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 192 ~g~~d-g~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~ 268 (411)
|+.| -.|.+|... ++.+..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-.. ..+.++. +...+..++
T Consensus 453 -G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vs 527 (893)
T KOG0291|consen 453 -GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVS 527 (893)
T ss_pred -eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEE
Confidence 5454 457778865 5777888999999999999999999999999999 999998654 2344555 556799999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (411)
|+|||+.||+++.||.|.+||++.+.....+....+ ..+.+ ...+.+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD----------------------~~~gR---------~~~D~~-- 574 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD----------------------LSGGR---------KETDRI-- 574 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhh----------------------ccccc---------ccccee--
Confidence 999999999999999999999999876643333311 00000 000000
Q ss_pred ccceEEEEeCC--CceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 349 EWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 349 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
+.+-.. -....+.++++ +-|+++|....|-+|.+++
T Consensus 575 -----ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 575 -----TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred -----ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 000000 13346789999 7788888889999999886
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=233.83 Aligned_cols=279 Identities=18% Similarity=0.252 Sum_probs=229.0
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
...+|.++|++++|+|++++|++++ +|.+++|++.+....... ..+...+..+.|.+++..+++++.+ +.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--KGHTGPVRDVAASADGTYLASGSSD-----KTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE--ecCCcceeEEEECCCCCEEEEEcCC-----CeEE
Confidence 4568999999999999999999999 999999999875543333 3566667788999988778887777 9999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
+||+.+++.+..+. +...+.++.|++++.+++ . ++.|++||+.+++....+..+...+ .++.+++++.++++ +
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~-~ 153 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV--NSVAFSPDGTFVAS-S 153 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE--EEEEEcCcCCEEEE-E
Confidence 99999888887777 777999999999977776 3 8999999999888888888666644 44555555566654 5
Q ss_pred CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198 194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (411)
Q Consensus 194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (411)
+.++.|++|+.. .+....+..|...+.++.|+|+++.|++++.++. |++||+++++.+..+.. +...+.++.|+|+
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~ 230 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPD 230 (289)
T ss_pred cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCC
Confidence 569999998876 5667788889999999999999999999999999 99999999888888765 6779999999999
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF 352 (411)
Q Consensus 273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (411)
+.++++++.||.|++|++.+++...
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------------------------------- 255 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQ------------------------------------------------------- 255 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEE-------------------------------------------------------
Confidence 8899888889999999998765432
Q ss_pred EEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198 353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~ 386 (411)
.+..+......++|+++ +.|++++.||.+++|+
T Consensus 256 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 256 -TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 12222234566889888 7888899999999984
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-32 Score=254.11 Aligned_cols=244 Identities=16% Similarity=0.257 Sum_probs=217.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------c---------------------eEEeecCCCCEEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------E---------------------TFRRDLKSGGFRIV 91 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~---------------------~~~~~~~~~~~~~~ 91 (411)
.....++|..|++|+++||.|- |..|++|.+.+.+ . .....+-+|...|.
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 3456789999999999999999 9999999987411 0 01122347888999
Q ss_pred EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEE
Q 015198 92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ 167 (411)
Q Consensus 92 ~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~ 167 (411)
...|+|+..+|+++++| +++++|.+.+..++-.++ |..+|..+.|+|-|.+++ .|++.++|.....++++.
T Consensus 456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 99999999999999999 999999999999999998 999999999999999999 799999999999999999
Q ss_pred EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
+.+|...+.++.|+|+. .+++ +|+.|.+|++|+.. +..++.|.+|.++|.+++|+|+|++|++|+.|+. |.+||+
T Consensus 531 faghlsDV~cv~FHPNs--~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl 606 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNS--NYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL 606 (707)
T ss_pred hcccccccceEEECCcc--cccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence 99999877777776654 5665 58999999998864 6788999999999999999999999999999999 999999
Q ss_pred CCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.+++.+..+.+ |.+.|.++.|+.||..||+|+.|.+|++||+......
T Consensus 607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999 7899999999999999999999999999999877654
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=227.32 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=243.5
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
...+.+|.+.|.|+++.|-+++|++|+ |++|+|||+.+++..+. +.+|...+..+.+++..-++.++++| +.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHpYlFs~ged-----k~ 216 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHPYLFSAGED-----KQ 216 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchhheeeeeeecccCceEEEecCC-----Ce
Confidence 355789999999999999999999999 99999999998665444 44788889999999999999999998 99
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
|+.||++.++.++.+. |-..|.+++.+|.-..++ .|..+++||+++...+..+.+|.+++..+.+.+.. ..++
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--pqvi- 293 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--PQVI- 293 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC--CceE-
Confidence 9999999999999987 999999999999887777 79999999999999999999999977665555432 2343
Q ss_pred ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
+|+.|++|++|+.. ++....+..|...+.+++.+|....+|+++.|. |+-|++..|..+..+.+ |.+.|++++.+
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~n 369 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVN 369 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeec
Confidence 58899999998865 577788899999999999999999999999886 99999999999999887 88899999998
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (411)
.|| ++++|+++|.|.+||.++|-+-+..... +.|-...++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------------------------vqpGSl~sE- 409 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------------------------VQPGSLESE- 409 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCccccccccc--------------------------------------ccCCccccc-
Confidence 886 6779999999999999998755311111 111111111
Q ss_pred ceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198 351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG 392 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~ 392 (411)
..+..++|... .+|+++..|-.+.+|.-|+.-.
T Consensus 410 ---------agI~as~fDktg~rlit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 410 ---------AGIFASCFDKTGSRLITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred ---------cceeEEeecccCceEEeccCCcceEEEecccccC
Confidence 23456677665 8899999999999999887433
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-31 Score=217.42 Aligned_cols=242 Identities=12% Similarity=0.152 Sum_probs=200.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
....||+..|..+..++||++.++++ |+.+++||+.+++... .|.+|...+.+++++++...+++|+.| ++|
T Consensus 57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~--~f~GH~~dVlsva~s~dn~qivSGSrD-----kTi 129 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR--RFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTI 129 (315)
T ss_pred eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE--EEEecCCceEEEEecCCCceeecCCCc-----cee
Confidence 44788999999999999999999999 9999999999864433 355999999999999999999999998 999
Q ss_pred EEEECCCCcEEEEEe---ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 117 IIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~---~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
++|++. +.+..++. +...|.++.|+|+ ..+++ .|++|++||+++.+..+.+.+|.+.+..+.+++ ||.+
T Consensus 130 klwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp--DGsl 206 (315)
T KOG0279|consen 130 KLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP--DGSL 206 (315)
T ss_pred eeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC--CCCE
Confidence 999954 45555554 3789999999998 56666 799999999999999999999988555555555 5556
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-------CC
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-------DR 261 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------~~ 261 (411)
.+ +|+.||.+.+|+.+.........|...|.+++|+|+.-.|+.+.. .. |+|||+.++.++.++.... ..
T Consensus 207 ca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~ 283 (315)
T KOG0279|consen 207 CA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TS-IKIWDLESKAVVEELKLDGIGPSSKAGD 283 (315)
T ss_pred Ee-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-Cc-eEEEeccchhhhhhccccccccccccCC
Confidence 65 488999999999887666666778999999999999877776654 44 9999999998877665321 12
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
....+++|++||+.|++|-.|+.|++|.+..
T Consensus 284 ~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 284 PICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 2456789999999999999999999999853
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-30 Score=210.71 Aligned_cols=287 Identities=12% Similarity=0.175 Sum_probs=228.8
Q ss_pred CccccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCC-CcceEEeec-CCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP-FKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
+.....+|.++|..++|+|- |..||+++ |+.|+||+... .....+..+ ..|...+.+++|+|.+.+|++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD--- 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD--- 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence 34567899999999999998 89999999 99999999884 222233222 3577889999999999999999999
Q ss_pred CCCeEEEEECCCC--cEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC---ceeeEEEeccCCCcceEEEcc
Q 015198 112 PPTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD---LKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 112 ~d~~i~vwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~ 182 (411)
.++.||.-..+ +++..+. |...|.+++|+++|.+++ .|..|-||.+.. .++...++.|...+..+.++|
T Consensus 83 --~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 83 --ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred --ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 99999985544 6777777 999999999999999999 799999999863 467788899999888888887
Q ss_pred CCCceEEEEecCCCCeEEEEEcC-C---cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198 183 HSSTSVLACPGLQRGQVRIEHFG-L---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i~~~~-~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (411)
..+ +|+ +++.|.+|++|... . .+++.+.+|...|.+++|++.|..|++++.|+. ++||-..+ .+..
T Consensus 161 t~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~- 230 (312)
T KOG0645|consen 161 TED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG- 230 (312)
T ss_pred Ccc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch-
Confidence 654 454 57899999996544 2 578999999999999999999999999999999 99998652 2222
Q ss_pred CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccc
Q 015198 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM 338 (411)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (411)
.|...++.+.|. ...|++++.|+.|++|.-...-.. ..++.+
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~------------------------------------p~~~l~ 272 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE------------------------------------PSWNLL 272 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC------------------------------------chHHHH
Confidence 266789999998 457999999999999987732110 111111
Q ss_pred ccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEe
Q 015198 339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~ 388 (411)
. ..-+.++..++.++|.|. ++|++++.||.+.+|++.
T Consensus 273 ~-------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 A-------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred H-------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1 122334456778999994 999999999999999875
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-30 Score=245.46 Aligned_cols=251 Identities=17% Similarity=0.250 Sum_probs=211.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
|...|.++.|+++|++|++++ ++.+++|+...........+.+|...|..+.|++++.++++++.| ++|++||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-----~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-----KTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-----ceEEEeec
Confidence 478999999999999999998 999999999654422333345889999999999999999999998 99999999
Q ss_pred -CCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 122 -HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 122 -~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
..+.+++++. |...|++++|+|++++++ .|++|++||+++++++..+..|...+.. +++++++.+|++ ++.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~--~~f~~d~~~l~s-~s~d 309 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG--LAFSPDGNLLVS-ASYD 309 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE--EEECCCCCEEEE-cCCC
Confidence 5568889987 999999999999997777 7999999999999999999999985554 455556677776 5789
Q ss_pred CeEEEEEcCCcc---eEEEeccccc--eeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cceEEEEeC
Q 015198 197 GQVRIEHFGLNM---IKLINAHDSH--IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIALS 270 (411)
Q Consensus 197 g~i~i~~~~~~~---~~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~~s 270 (411)
+.|++|+..... +..+..+... ++++.|+|++.+|++++.|+. +++||+..+..+..+..+... ..+.+...+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEeccccc
Confidence 999999988766 4566666555 999999999999999999999 999999999999998884222 145556667
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
+.+.++++|+.|+.|++|++.++.....+..|
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 89999999999999999999998766544444
No 20
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=212.03 Aligned_cols=247 Identities=16% Similarity=0.175 Sum_probs=203.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~ 115 (411)
....+|...|.+|+|+.+|..|++|+ |+++.+|+++...........+|...+..++|++ +...+++++.| ..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d-----k~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD-----KT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC-----ce
Confidence 55778999999999999999999999 9999999999876555555567777888888775 33455555555 99
Q ss_pred EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
|++||++.++++..+.....-.-+.|+|++.+++ .|..|.+.|.++.+.+...+.... +.-+++. .++.+++.+
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~--~~nd~Fflt 165 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN--NSNDLFFLT 165 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec--CCCCEEEEe
Confidence 9999999999999999777777889999998888 688999999988877766544332 2233444 333444333
Q ss_pred cCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198 193 GLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 193 g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
...|.|.| --...+++..+++|.....||.|+|+|++||+|+.|.. +.+||+...-+++.+.. +.-+|..|.|+.
T Consensus 166 -~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~ 241 (313)
T KOG1407|consen 166 -NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSH 241 (313)
T ss_pred -cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEecc
Confidence 24689998 33367899999999999999999999999999999999 99999998888888888 778999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccccccC
Q 015198 272 NVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
||++||++++|..|-|=++++|.+.
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred CcceeeccCccceEEeEecccCCeE
Confidence 9999999999999999999999864
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=2.6e-29 Score=224.16 Aligned_cols=285 Identities=16% Similarity=0.140 Sum_probs=225.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee-cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
....|..-|.|+.|+|||+++|+.+ ||.|.|||-.+++++.... -..|...|.++.|+||...+++++.| .++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt~ 259 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KTI 259 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ceE
Confidence 4678999999999999999999988 9999999999877766543 23788899999999999999999988 999
Q ss_pred EEEECCCCcEEEEEeecC----ceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 117 IIWDDHQSRCIGEFAFRS----DVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
+|||+.++++++++.... ....+-|-.+..+.+ .+|.|.+++...+..++.+.+|...++.+.+++ ++.+|+
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--d~~~i~- 336 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--DGKTIY- 336 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--CCCEEE-
Confidence 999999999999998433 334455665555555 899999999998888888888887555444444 334443
Q ss_pred ecCCCCeEEEEEcC------------------------------------------------------------------
Q 015198 192 PGLQRGQVRIEHFG------------------------------------------------------------------ 205 (411)
Q Consensus 192 ~g~~dg~i~i~~~~------------------------------------------------------------------ 205 (411)
+|+.||.|.-|+..
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 35555555555432
Q ss_pred ---------------------------------------------------------C---cceEEEeccccceeEEEec
Q 015198 206 ---------------------------------------------------------L---NMIKLINAHDSHIACFTLT 225 (411)
Q Consensus 206 ---------------------------------------------------------~---~~~~~~~~~~~~i~~l~~s 225 (411)
+ .....+..|.++|++++|+
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 1 1122345688899999999
Q ss_pred CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCC
Q 015198 226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST 305 (411)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~ 305 (411)
||+.+||++...+. +.+||+.+.+. ..-....|.+.|.+++|+|+..++|+|+.|..|.||+++.+.+--...+
T Consensus 497 pd~~yla~~Da~rk-vv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn---- 570 (603)
T KOG0318|consen 497 PDGAYLAAGDASRK-VVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN---- 570 (603)
T ss_pred CCCcEEEEeccCCc-EEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc----
Confidence 99999999999999 99999988876 3434444889999999999999999999999999999998865311111
Q ss_pred CCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEE
Q 015198 306 PSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRC 385 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~ 385 (411)
.+...+..+.|-.+..++..|.|..+.+|
T Consensus 571 ---------------------------------------------------AH~~gVn~v~wlde~tvvSsG~Da~iK~W 599 (603)
T KOG0318|consen 571 ---------------------------------------------------AHLGGVNSVAWLDESTVVSSGQDANIKVW 599 (603)
T ss_pred ---------------------------------------------------ccccCceeEEEecCceEEeccCcceeEEe
Confidence 11234778899999999999999999999
Q ss_pred EEe
Q 015198 386 SFD 388 (411)
Q Consensus 386 ~~~ 388 (411)
++.
T Consensus 600 ~v~ 602 (603)
T KOG0318|consen 600 NVT 602 (603)
T ss_pred ccc
Confidence 875
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=2.6e-30 Score=227.65 Aligned_cols=280 Identities=18% Similarity=0.260 Sum_probs=229.1
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCC------CcceEEeec------CCCCEEEEEEeccCCeEEEEecC
Q 015198 41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEP------FKETFRRDL------KSGGFRIVEMLFRCNILALVGAG 106 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~ 106 (411)
..|+.+|.+.+|+|-.. .|++|+ +-+.++|++.. .+..++..+ ......++++.|+.+|..|++|.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999877 888998 99999999863 111111111 12345789999999999999999
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198 107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 107 ~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (411)
.+ |.+++|+ ..|..+.++. |+++|.++.|+.+|.+++ .|+++.+||..++...+.+..|..+. +.+.|
T Consensus 255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~--lDVdW 326 (524)
T KOG0273|consen 255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA--LDVDW 326 (524)
T ss_pred cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc--cceEE
Confidence 98 9999999 6777777776 999999999999999988 79999999999999999998887652 33333
Q ss_pred CCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198 183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (411)
-.+.. +++ .+.|+.|++.... ..++.++.+|.+.|.++.|+|.|.+|++++.|++ ++||..........+.. |.
T Consensus 327 ~~~~~-F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs 401 (524)
T KOG0273|consen 327 QSNDE-FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS 401 (524)
T ss_pred ecCce-Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence 33322 444 5689999995554 5788999999999999999999999999999999 99999988888888888 88
Q ss_pred cceEEEEeCCCC---------CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCC
Q 015198 262 AEIYSIALSPNV---------QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332 (411)
Q Consensus 262 ~~v~~l~~spdg---------~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (411)
..|..+.|+|+| ..|++++.|++|++||+..+.+..
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----------------------------------- 446 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----------------------------------- 446 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-----------------------------------
Confidence 899999999965 479999999999999999998653
Q ss_pred CcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.|--+...++.++|+|+ ..++.|+-||.|++|+...
T Consensus 447 ---------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 447 ---------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ---------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 22222346788999999 6666667799999998876
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=1.6e-29 Score=210.27 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=203.8
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC--c--ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--K--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
.+-....|..++|+|.|+++|+|+ |+...||++.+. + ......+.+|...+.++.|-++..++.+.+ | .
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-D-----~ 166 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-D-----M 166 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-C-----c
Confidence 334456799999999999999999 999999999853 1 233445778888899999988776655544 4 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+..+||+++++.+..+. |.+.|.++.++| +++.++ .|+..++||++.+.+.+.|.+|...+..++|.|++. -+
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--af 244 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AF 244 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC--ee
Confidence 99999999999999998 999999999999 887777 799999999999999999999999888887777664 45
Q ss_pred EEecCCCCeEEEEEcCC-cceEEEe--ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198 190 ACPGLQRGQVRIEHFGL-NMIKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~-~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (411)
+ +|++|++.++++.+. +.+..+. .-..+|++++|+..|++|++|..|.+ +.+||.-.++.+..+.+ |+..|.+
T Consensus 245 a-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvSc 320 (343)
T KOG0286|consen 245 A-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSC 320 (343)
T ss_pred e-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEE
Confidence 4 599999999977765 4444443 23568999999999999999999999 99999999999999998 8999999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEE
Q 015198 267 IALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd 289 (411)
+..+|||.-|++|+.|.+++||.
T Consensus 321 l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 321 LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999994
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.2e-30 Score=242.39 Aligned_cols=284 Identities=11% Similarity=0.201 Sum_probs=243.9
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
.+.....|..++|+|...+++++- .|.|++||..-+. +...|..|...+..+.|+|..-++++|++| ..|+|
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDD-----ykIkV 77 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDD-----YKIKV 77 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCc-----cEEEE
Confidence 445667899999999999999999 9999999987533 233366899999999999999999999998 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
|+.++.+++.++. |-.-|..+.|++.-.+++ .|.+|+||+..+.+++..+.+|.+ .++|..++|...+++ +++
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIV-SaS 154 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIV-SAS 154 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEE-Eec
Confidence 9999999999987 999999999999999998 789999999999999999999998 667767776555555 588
Q ss_pred CCCeEEEEEcCC------------------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 195 QRGQVRIEHFGL------------------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 195 ~dg~i~i~~~~~------------------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
-|.+|++|+..+ -....+.+|...|+-++|+|.-.+|++|+.|.. |++|
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEE
Confidence 999999999875 012456799999999999999999999999999 9999
Q ss_pred ECCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccc
Q 015198 245 NTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL 322 (411)
Q Consensus 245 d~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (411)
.+...+ .+-+..+ |.+.|.++-|+|...++++.++|++|+|||+......+
T Consensus 234 rmnetKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~------------------------- 286 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ------------------------- 286 (1202)
T ss_pred Eeccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee-------------------------
Confidence 986544 3445556 88899999999999999999999999999999877543
Q ss_pred cCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCC
Q 015198 323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHG 392 (411)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 392 (411)
+|+-..+...+++-+|.-.|++++.|+-+.+|.++-+..
T Consensus 287 -------------------------------tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 -------------------------------TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred -------------------------------eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 566666677788999999999999999999999996543
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=1.6e-31 Score=231.23 Aligned_cols=240 Identities=14% Similarity=0.217 Sum_probs=202.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
-+..|..|.|.|+|+.|++|+ .|.+.+|+..... ++.-++.|...|..+.|+.++..+++++.+ |.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence 456899999999999999999 9999999986433 223345899999999999999999999998 99999995
Q ss_pred CCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
.-. .++.++ |...|++++|+|+...++ .||.|+|||....+....+.+|.-.+..+ .|+|...+|+ +|+.|
T Consensus 168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv--dWHP~kgLia-sgskD 243 (464)
T KOG0284|consen 168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV--DWHPTKGLIA-SGSKD 243 (464)
T ss_pred chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee--ccCCccceeE-EccCC
Confidence 444 344444 569999999999766665 79999999999888888888888755544 5555545555 57899
Q ss_pred CeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-CCC
Q 015198 197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQ 274 (411)
Q Consensus 197 g~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~ 274 (411)
..|++|+. .+.++..+.+|...|..+.|++++++|++++.|.. +++||+++.+.++.+++ |+..|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence 99999875 56889999999999999999999999999999999 99999998899999998 899999999999 456
Q ss_pred EEEEEeCCCcEEEEEccccccC
Q 015198 275 WLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 275 ~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+|.+|+.||.|..|.+...++.
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred ceeeccCCCceEEEeccccccc
Confidence 8889999999999999854443
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.9e-29 Score=255.08 Aligned_cols=291 Identities=15% Similarity=0.191 Sum_probs=218.9
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc------eEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCC
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE------TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQY 111 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~ 111 (411)
...|.+.|.+++|+|+|++||+|+ |+.|+||+...... .....+ .+...+..+.|++ ....+++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D--- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE--- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC---
Confidence 445899999999999999999999 99999999753110 011112 2344567778876 45678888887
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc-CCC
Q 015198 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH-HSS 185 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 185 (411)
+.|++||+.+++.+..+. |...|.+++|+| ++.+++ .|+.|++||+++++.+..+..+. .+.++.+ .++
T Consensus 555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~ 629 (793)
T PLN00181 555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---NICCVQFPSES 629 (793)
T ss_pred --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---CeEEEEEeCCC
Confidence 999999999999888887 899999999996 666665 69999999999998888886543 3445554 334
Q ss_pred ceEEEEecCCCCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC------ceEEEEeC
Q 015198 186 TSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRR 257 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~ 257 (411)
+.++++ |+.||.|++|+.... .+..+.+|...|.++.|. ++.+|++++.|+. |++||+..+ +.+..+.+
T Consensus 630 g~~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 630 GRSLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred CCEEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence 566665 779999999997653 456778999999999997 7789999999999 999999743 56777877
Q ss_pred CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccc
Q 015198 258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF 337 (411)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (411)
|...+..++|++++.+|++|+.|+.|++|+...+......... .
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~---------------------------~------- 750 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK---------------------------T------- 750 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc---------------------------c-------
Confidence 7788999999999999999999999999998765322000000 0
Q ss_pred cccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198 338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (411)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~ 387 (411)
...++. ....-....+..++|+++ ..|++++.||.|.+|.+
T Consensus 751 -~~~~~~--------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 -IDPVSG--------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -CCcccc--------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 000000 000111235677889988 78899999999999986
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=232.19 Aligned_cols=247 Identities=16% Similarity=0.193 Sum_probs=206.7
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
...+|...|++++++|||+++|+|. ||.|+|||...+-. ..+|..|...+..+.|...+..+++.+-| |+|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLD-----GtVR 417 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLD-----GTVR 417 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence 3578999999999999999999999 99999999886333 33466899999999999999999999998 9999
Q ss_pred EEECCCCcEEEEEee--cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 118 IWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 118 vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
.||+...+..+++.. +....+++..|.|.+++ ..-.|++|++++|+++..+.+|..|+..++|++.+ ..|+
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~La- 494 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLLA- 494 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeEE-
Confidence 999999999999985 44566888888899888 23469999999999999999999987766666655 4665
Q ss_pred ecCCCCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC-----------
Q 015198 192 PGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG----------- 258 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~----------- 258 (411)
+|+.|.+|++|+.-.. .+..+ .+...+..++|+|+|+.||++.-||. |.+||++.+..+..+.+.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D 572 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD 572 (893)
T ss_pred eccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence 5899999999986544 44444 36778899999999999999999999 999999876555433221
Q ss_pred -------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 259 -------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 259 -------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
......+.|++++||..|++|+..+.|.||++.++-..+
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 122478999999999999999999999999999986554
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.3e-31 Score=235.08 Aligned_cols=285 Identities=14% Similarity=0.172 Sum_probs=232.9
Q ss_pred CccccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
......+|...|+++.|.| .+.+|++++ |+.|+||++-..+.++ ..+.+|...|.++.|+.++..+.+++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-rtf~gH~k~Vrd~~~s~~g~~fLS~sfD----- 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-RTFKGHRKPVRDASFNNCGTSFLSASFD----- 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-hhhhcchhhhhhhhccccCCeeeeeecc-----
Confidence 3455789999999999999 788899999 9999999998755544 4466999999999999999999999998
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeE-EE-E--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI-VV-V--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+.|++||+++|+++..+.....+.++.|+|++. .+ + .|+.|+.||+++++.++.+..|-..+ ..+.+-+++..+
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i--~~i~F~~~g~rF 357 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI--LDITFVDEGRRF 357 (503)
T ss_pred eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe--eeeEEccCCceE
Confidence 999999999999999999999999999999983 33 3 79999999999999999998887744 455555566677
Q ss_pred EEecCCCCeEEEEEcCCcceEEE--eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC---ceEEEEeCCCCCcce
Q 015198 190 ACPGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEI 264 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v 264 (411)
++ .+.|+.++||.........+ ..+.....++..+|++.+++.-+.|+. |.+|.+... .....++++.-.+.-
T Consensus 358 is-sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 358 IS-SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ee-eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCce
Confidence 65 56899999998876443322 333445668999999999999999999 999986432 223456664445667
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (411)
..+.|||||.+|++|..||.+.+||.++-+...
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~----------------------------------------------- 468 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS----------------------------------------------- 468 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhh-----------------------------------------------
Confidence 889999999999999999999999999987653
Q ss_pred ccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEE
Q 015198 345 YFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCS 386 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~ 386 (411)
.++.+++....+.|+|. ..+++++-||.|++|.
T Consensus 469 ---------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 ---------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 34444456667889997 8888888899999984
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=204.11 Aligned_cols=248 Identities=13% Similarity=0.198 Sum_probs=204.9
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
..+..+..|.++|.++.|+-||+|.++++ |.+|++|+...+. +..+..+|...+.....+.+...+++++.|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgD----- 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGD----- 80 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCC-----
Confidence 34556789999999999999999999888 9999999977544 334455888999999999899899999988
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC--ceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..+.+||+.+|+.++.+. |.+.|+.++|+.+...++ .|.++++||-++ .++++.+......+ ..+....
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V--~Si~v~~--- 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV--SSIDVAE--- 155 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce--eEEEecc---
Confidence 999999999999999998 999999999999999988 799999999865 47777777666644 4444432
Q ss_pred EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
..+.+|+.||+++.++.+...+.. .-...+|+++.|+++++.+++++.|+. +++.|-.+|+++..++++.....-...
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence 234469999999997765443322 224578999999999999999999999 999999999999999995444455667
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+++.....+++|++||.|++||+......
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceee
Confidence 78888889999999999999999887643
No 30
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-29 Score=208.42 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=247.1
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.+.+|+.+++.+.|+.+|.+|.++. |....||-..+++.+-.. .+|...+.++..+.+...+++|+.| .+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty--~GHtGavW~~Did~~s~~liTGSAD-----~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY--DGHTGAVWCCDIDWDSKHLITGSAD-----QTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee--cCCCceEEEEEecCCcceeeecccc-----ceeE
Confidence 4678999999999999999999999 999999988765655444 4888899999988899999999998 9999
Q ss_pred EEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+||+++|+++..++.+.+|..+.|++++.+++ . .+.|.++|++.... .+
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-----------------------~~ 134 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS-----------------------DI 134 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh-----------------------hh
Confidence 99999999999999999999999999988776 2 34455555532110 00
Q ss_pred EEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE-eCCCCCcceEEEE
Q 015198 190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIA 268 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~ 268 (411)
....+...+..+...++.+-|.|-+++|++|.+||. |.+||+++|+.+..- .. |...|+.|+
T Consensus 135 --------------~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q 197 (327)
T KOG0643|consen 135 --------------DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQ 197 (327)
T ss_pred --------------cccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEcccCceeeechhh--hcccccccc
Confidence 011234445566788899999999999999999999 999999998665443 34 778999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCc--cccCCCCCCCCCCcccccccccCccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD--TLISPSTGANPGSSLSFMRGVLPKYF 346 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (411)
+++|..++++++.|.+-++||+.+-+..++...+ ||+|.+.+++.++ .++.+.......+...-.+++..++|
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred ccCCcceEEecccCccceeeeccceeeEEEeeec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 9999999999999999999999999999999998 9999999999988 44555555566666666677777777
Q ss_pred cc--ccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 347 SS--EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 347 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
+- +..+.+++-+.+....++|+|+ ....+|+.||.|.+.-++.
T Consensus 273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 65 5668889999999999999999 6677788899999998886
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.5e-30 Score=231.11 Aligned_cols=246 Identities=13% Similarity=0.187 Sum_probs=212.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
....+.+.|.++.|+|....++++- +|.|.|||.++...+ ..++-....+.+..|-.....+++|++| ..|+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfeV~~~PvRa~kfiaRknWiv~GsDD-----~~Ir 80 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFEVSEVPVRAAKFIARKNWIVTGSDD-----MQIR 80 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeeeecccchhhheeeeccceEEEecCC-----ceEE
Confidence 3455899999999999999999999 999999999975543 3344667778888888888999999998 9999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
||+..+++.+..+. |..-|++++.+|...++. .|-.|++||.+.. .+.+.+++|.+.+..+++.|... ..+| +
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa-S 158 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-NTFA-S 158 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc-ccee-e
Confidence 99999999999999 999999999999999888 6889999999764 67888999998444444444433 3344 5
Q ss_pred cCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCC--CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 193 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
++-|++|++|.... .+..++++|...|+++.+-+-| .+|++|+.|.. |+|||..+..+++++.+ |...|..+.|
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f 235 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF 235 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence 78999999998765 5778899999999999998765 59999999999 99999999999999999 7889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+|.=.++++|++||+++||+-.+-+..
T Consensus 236 hp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 236 HPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred cCCCcEEEEecCCccEEEecCcceehh
Confidence 999999999999999999998887644
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-30 Score=219.93 Aligned_cols=245 Identities=10% Similarity=0.191 Sum_probs=218.5
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
...+.+|.+.|..++|+..|++|++++ |-.+++||.++.....+. +.+|...+.++.|-|.+..+++++.| .+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD-----~t 216 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-LIGHEHGVSSVFFLPLGDHILSCSRD-----NT 216 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-hcCcccceeeEEEEecCCeeeecccc-----cc
Confidence 345789999999999999999999999 888999999875433333 44888889999999999999999998 99
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-------
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS------- 184 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 184 (411)
|+.|++.+|.++.++. |...|.-++.+.||.+++ .|.+|++|-+.++++...+..|..++.++++++..
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 9999999999999998 899999999999999999 78999999999999999999999998888887632
Q ss_pred -----CceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198 185 -----STSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (411)
Q Consensus 185 -----~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (411)
++..+..+++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++..++..
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a- 374 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA- 374 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC-
Confidence 122334568999999998876 5788999999999999999999999999999999 99999999999999997
Q ss_pred CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
|+.-|+++.|..+..++++|+-|.++++|..
T Consensus 375 -h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 -HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7779999999999999999999999999974
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-30 Score=223.49 Aligned_cols=290 Identities=12% Similarity=0.088 Sum_probs=236.9
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
.....+..|.+.|+-+.|+++|++||+++ |.+..||.+..... .+..++.+|...+..+.|+||..++++|+.+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~---- 290 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD---- 290 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch----
Confidence 34456789999999999999999999999 99999999865433 3445566899999999999999999999988
Q ss_pred CCeEEEEECCCCcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 113 PTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..+.+||+.+|.....+.+ ...+.+.+|.||+..++ .|+.+..||+. |+.+..+++... ..+.+++..+||.
T Consensus 291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGK 367 (519)
T ss_pred -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCc
Confidence 8899999999999999884 58899999999998887 69999999985 455555544332 2455666666677
Q ss_pred EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
.++..+ .|..|++++...+.-..+.....+|++++++.+|+++++.=.+.. |++||++..+.+..+.++.....+-.-
T Consensus 368 ~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 368 YVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred EEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEe
Confidence 776655 799999988776665545566789999999999999999888999 999999988888888884333455556
Q ss_pred EeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198 268 ALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (411)
Q Consensus 268 ~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (411)
+|-. +..++++|++|+.|+||+..+++...++++|.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs------------------------------------------- 482 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS------------------------------------------- 482 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-------------------------------------------
Confidence 6764 55899999999999999999999887666661
Q ss_pred ccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198 347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~ 389 (411)
..+.+++|.|. .+++.++.||.|+||...+
T Consensus 483 -------------~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 -------------KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -------------ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 36788999997 7899999999999998775
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=9.4e-29 Score=201.25 Aligned_cols=262 Identities=18% Similarity=0.227 Sum_probs=209.6
Q ss_pred EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe-ec
Q 015198 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FR 133 (411)
Q Consensus 58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~-~~ 133 (411)
+|++++ |.+||+|...++...... +.....+..+...|+...|+.++. ..|++||+.++. ++.++. |.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTi--qh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTI--QHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEE--ecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEeccC
Confidence 788888 999999999986654444 356677888888999999999887 899999998875 477777 88
Q ss_pred CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ce
Q 015198 134 SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MI 209 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~ 209 (411)
..|.++.|..+|+++. .||+++|||++...+.+.+.. ..++..+.+.++. ..|+ +|..+|.|++|+.... +.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQ--teLi-s~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQ--TELI-SGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCc--ceEE-eecCCCcEEEEEccCCccc
Confidence 9999999999999999 799999999999766666653 4666766666653 3444 4789999999998765 33
Q ss_pred EE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc------eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 210 KL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 210 ~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
.. +......|.++...|||.+|+.+...|. .++|++-++. ++..++. |...+..+.+|||+++||+++.|
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecCC
Confidence 33 3445678999999999999999999999 9999986643 4455666 88899999999999999999999
Q ss_pred CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 015198 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH 362 (411)
Q Consensus 283 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
.+++||++++--+.+ ...+-...-+
T Consensus 237 ktv~iwn~~~~~kle-------------------------------------------------------~~l~gh~rWv 261 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLE-------------------------------------------------------LVLTGHQRWV 261 (311)
T ss_pred ceEEEEecCCceeeE-------------------------------------------------------EEeecCCceE
Confidence 999999998762221 0111122356
Q ss_pred EEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 363 ~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
..|+|+.+ ..|+++++|+.+++|.+..
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred EeeeeccCccEEEecCCCCceeeccccc
Confidence 67999999 7788888899999999886
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4e-28 Score=216.62 Aligned_cols=254 Identities=14% Similarity=0.222 Sum_probs=206.8
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
.....+|..+++-..|+|.|.|+|+|. .|.||||+....+.+++.+++.-...+..+.|+.++..++..++.. -.-|.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~ 130 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGH 130 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeE
Confidence 345679999999999999999999999 9999999998777788877777778888999998887665544420 01266
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
+.+|| +|..+.++. |...|+++.|-|...+-+ .|+.|.+|+=.-.+....+..|...+. ++.++||+..+|
T Consensus 131 ~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~--~VRysPDG~~Fa 206 (603)
T KOG0318|consen 131 VFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN--CVRYSPDGSRFA 206 (603)
T ss_pred EEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee--eEEECCCCCeEE
Confidence 77777 777788887 899999999998876544 799999999776777777888887544 455555677888
Q ss_pred EecCCCCeEEEEE-cCCcceEEEe---ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC---------
Q 015198 191 CPGLQRGQVRIEH-FGLNMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR--------- 257 (411)
Q Consensus 191 ~~g~~dg~i~i~~-~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--------- 257 (411)
++| .||++.+++ .+++.+..+. +|.+.|.+++|+||++.+++++.|.+ ++|||+.+.+++.++..
T Consensus 207 t~g-sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqv 284 (603)
T KOG0318|consen 207 TAG-SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQV 284 (603)
T ss_pred Eec-CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEE
Confidence 766 799999955 6677788887 89999999999999999999999999 99999987655444311
Q ss_pred --------------------------------CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 258 --------------------------------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 258 --------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
..|...|+++..++|+.+|++|+.||.|.-|+..++...+
T Consensus 285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 1277899999999999999999999999999999987653
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.5e-31 Score=222.28 Aligned_cols=288 Identities=12% Similarity=0.200 Sum_probs=225.1
Q ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198 31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS 109 (411)
Q Consensus 31 ~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 109 (411)
.+.+...+........|+|+.+. ...+++|. |++|+|||.+....... +.+|...+.++.|... ++++|+.|
T Consensus 184 r~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~r--viisGSSD- 256 (499)
T KOG0281|consen 184 RHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDER--VIVSGSSD- 256 (499)
T ss_pred ceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccce--EEEecCCC-
Confidence 34455556667788899999985 55788999 99999999987554333 4488999999988765 88899988
Q ss_pred CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCce---eeEEEeccCCCcceEEEccCC
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHS 184 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 184 (411)
.+|++||+++|+++.++- |...|..+.|+..-...+ .|.++.+||+.... +.+.+.+|...+.++.+ +.
T Consensus 257 ----sTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~ 330 (499)
T KOG0281|consen 257 ----STVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD 330 (499)
T ss_pred ----ceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--cc
Confidence 999999999999999976 899999999997766555 89999999996543 34556777765555444 33
Q ss_pred CceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198 185 STSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
++++ +++.|.+|++|+... ..++.+.+|...|.|+.+ .|+++++|+.|.+ |++||+..|.++..+++ |+.-
T Consensus 331 --kyIV-sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeL 402 (499)
T KOG0281|consen 331 --KYIV-SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEEL 402 (499)
T ss_pred --ceEE-EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHh
Confidence 3555 467899999998764 778899999999999887 7899999999999 99999999999999999 8889
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (411)
|.++.|. .+.+++|+.||+|+|||+..+...+...... |.
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~----------Cl---------------------------- 442 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTL----------CL---------------------------- 442 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccccCCcccccch----------HH----------------------------
Confidence 9999994 5789999999999999999987543211110 00
Q ss_pred cccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
.+.--+.+.+....|.. -+|++.+.|..+.||+|..
T Consensus 443 ---------~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 443 ---------RTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ---------HhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCC
Confidence 00001123445556633 7899999999999999985
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=3.5e-29 Score=233.69 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=207.8
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-------------------------------EEEEE-
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------------------------------CIGEF- 130 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-------------------------------~~~~~- 130 (411)
++.....+.+..|+++...+|.|-.| ..|++|.+...+ ...++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 34556667788899999888888777 999999866211 12222
Q ss_pred eecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-C
Q 015198 131 AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L 206 (411)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~ 206 (411)
.|.++|....|+|+.++++ .|+++++|.+.+..++..+++|..|++.+.|+ |.|.++|+ ++.|++-++|... .
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFat-as~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFAT-ASHDQTARLWSTDHN 525 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEe-cCCCceeeeeecccC
Confidence 3889999999999999998 79999999999999999999999988888876 55778876 6799999999876 4
Q ss_pred cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198 207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH 286 (411)
Q Consensus 207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~ 286 (411)
.+++.+.+|-+.|.|+.|+|+..|+++||.|.+ ||+||+.+|..++.|.+ |.++|.+++|||+|++|++|+.||.|+
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEE
Confidence 778889999999999999999999999999999 99999999999999998 999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEE
Q 015198 287 IFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAA 366 (411)
Q Consensus 287 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (411)
+||+.+++...+. +-+.+.++.+.
T Consensus 603 iWDl~~~~~v~~l--------------------------------------------------------~~Ht~ti~Sls 626 (707)
T KOG0263|consen 603 IWDLANGSLVKQL--------------------------------------------------------KGHTGTIYSLS 626 (707)
T ss_pred EEEcCCCcchhhh--------------------------------------------------------hcccCceeEEE
Confidence 9999998865322 22246888999
Q ss_pred EccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198 367 FGSQ-NTVVIVSMDGSFYRCSFDPVHG 392 (411)
Q Consensus 367 ~~~~-~~~~~~~~dg~~~~~~~~~~~~ 392 (411)
|+.+ +.|++++.|..|.+|.+....+
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchhhcc
Confidence 9998 7788888899999998886443
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=232.53 Aligned_cols=285 Identities=19% Similarity=0.248 Sum_probs=213.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe--EEEEecCCCCCCCCCeEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~d~~i~v 118 (411)
.|++||.-++|+|.+.+|++|+ |+.++|||+.... ....|++++..+..+.|+|+. ..++++..| +.+++
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D-----~~v~v 175 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWNRWLLASGATD-----GTVRV 175 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccchhheeecCCC-----ceEEE
Confidence 4999999999999999999999 9999999998633 445577889999999999865 457888877 99999
Q ss_pred EECCCCcE-EEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce------------------------------
Q 015198 119 WDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK------------------------------ 163 (411)
Q Consensus 119 wd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~------------------------------ 163 (411)
||+.+... +..+. |.+.|+++.+.+|+..++ .|..+.+||+.+.+
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 99875443 44444 666666666666653333 34444444431100
Q ss_pred --------------------------------------------------------------------------------
Q 015198 164 -------------------------------------------------------------------------------- 163 (411)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (411)
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence
Q ss_pred -------------------------------------------------------------------eeEEEeccCCCcc
Q 015198 164 -------------------------------------------------------------------LLHQIETLANLRG 176 (411)
Q Consensus 164 -------------------------------------------------------------------~~~~~~~~~~~~~ 176 (411)
++....+|.+.+.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 1111122222222
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCCcc------e----EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM------I----KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~------~----~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
.++++. .+.-++++++.|+++++|...... + .....|...|++++++|+.+++|+||.|.+ .+||++
T Consensus 416 ava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~l 492 (775)
T KOG0319|consen 416 AVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDL 492 (775)
T ss_pred eeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecc
Confidence 222211 122233457899999999887611 1 122479999999999999999999999999 999999
Q ss_pred CCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCC
Q 015198 247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS 326 (411)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (411)
+.+..+.++.+ |...|+++.|+|..+.|++++.|++|+||.+++..+.++.++|.
T Consensus 493 e~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~----------------------- 547 (775)
T KOG0319|consen 493 EQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT----------------------- 547 (775)
T ss_pred cCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc-----------------------
Confidence 99999999999 89999999999999999999999999999999999998766662
Q ss_pred CCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 015198 327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQ 397 (411)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~ 397 (411)
..+-.+.|-.+ .+|+++|+||.+.+|++.. +||.+
T Consensus 548 ---------------------------------~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~ 583 (775)
T KOG0319|consen 548 ---------------------------------SAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEM 583 (775)
T ss_pred ---------------------------------ceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhh
Confidence 24556777665 9999999999999999985 56653
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=225.17 Aligned_cols=244 Identities=14% Similarity=0.171 Sum_probs=209.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.+..|+.+|.++.|+++|.++++|+ +|.|++|+.+-... .... ..+...|.+++|+|+...++++++| ++|+
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~-ahh~eaIRdlafSpnDskF~t~SdD-----g~ik 205 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQ-AHHAEAIRDLAFSPNDSKFLTCSDD-----GTIK 205 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhh-HhhhhhhheeccCCCCceeEEecCC-----CeEE
Confidence 3568999999999999999999999 99999999764222 2111 1344789999999999999999998 9999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
|||....+....+. |.-.|.++.|+|..-+++ .|+.|++||.+++.++.++..|.+ .++.+.+++++.+|++ +
T Consensus 206 iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt-~ 282 (464)
T KOG0284|consen 206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLT-G 282 (464)
T ss_pred EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEE-c
Confidence 99998888877777 899999999999888887 788999999999999999988887 6777777777788875 7
Q ss_pred CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198 194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
+.|..+++++.+ .+.+..+++|+..++++.|+|-. .+|.+|+.||. |..|.+...+++..+... |...|++++|+|
T Consensus 283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP 360 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPPA-HDGEIWSLAYHP 360 (464)
T ss_pred cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCcc-cccceeeeeccc
Confidence 799999997766 78888999999999999999954 58889999999 999999866666666544 889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccccc
Q 015198 272 NVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
-|.+|++|+.|.++++|.-....
T Consensus 361 lGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cceeEeecCCCcceeeeccCCCC
Confidence 99999999999999999765443
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=209.54 Aligned_cols=245 Identities=18% Similarity=0.197 Sum_probs=206.7
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
.+..+.+|++.|+++.|+.||.+||+|. +|.|+||...++....... .....+.-+.|+|...+++.|+.| |
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WHp~a~illAG~~D-----G 170 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWHPRAHILLAGSTD-----G 170 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEecccccEEEeecCC-----C
Confidence 5567899999999999999999999999 9999999999866655542 455567778899999999999998 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC-cc-------------
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL-RG------------- 176 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~-~~------------- 176 (411)
.+.+|.+.++...+.+. |..++++=.|.|+|+.++ .||+|++|++.+++++..+....+. ..
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99999999987777777 899999999999999988 7999999999999988877621100 00
Q ss_pred -----------------eEEEc--------------------cCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccce
Q 015198 177 -----------------LCCLS--------------------HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI 219 (411)
Q Consensus 177 -----------------~~~~~--------------------~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i 219 (411)
+.+.. +.....-|+++|+-||+|.||+.....++.+-.|..+|
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V 330 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV 330 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence 00000 11111224456889999999999998888888999999
Q ss_pred eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+ |...|.+++++|+++++++++.|++.+||++.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999998 779999999999 99999999999999999 88999999999999999999999999999875
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=204.77 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=225.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
.....|.+.|++++.+|+.+++++|+ |..-.||++.++..... +.+|...++++.|+.++.+|++|+.+ |.|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms-----G~v 130 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS-----GKV 130 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC-----ccE
Confidence 34678999999999999999999999 99999999998775554 44999999999999999999999998 999
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
+||+..++.....+. .-..|.-+.|+|.+.+++ .||.+.+|.+.++...+.+.+|..+...-.|.++ |+.++ +
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--GKr~~-t 207 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--GKRIL-T 207 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--CceEE-E
Confidence 999999999888886 677899999999888887 7999999999998888999999887776666666 55665 4
Q ss_pred cCCCCeEEEEEcCC-cceEEEe---------------------------------------------------cccccee
Q 015198 193 GLQRGQVRIEHFGL-NMIKLIN---------------------------------------------------AHDSHIA 220 (411)
Q Consensus 193 g~~dg~i~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i~ 220 (411)
|+.||+|++|+... .++..+. .+...+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 78999999998653 2221111 1122222
Q ss_pred EEE---ecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 221 CFT---LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 221 ~l~---~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
++. ++..-.+.|+|+.||+ |.|||+...+..+.+. |...|..+.|-+ ..+|++++.+|.|+.||.++|+...
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence 333 3334457789999999 9999998888776665 788899999998 6889999999999999999999876
Q ss_pred CCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEE
Q 015198 298 DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIV 376 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (411)
+...|+ ..+...+++++ +.++++
T Consensus 363 ~y~GH~--------------------------------------------------------~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 363 TYTGHQ--------------------------------------------------------MGILDFALSPQKRLVVTV 386 (399)
T ss_pred EEecCc--------------------------------------------------------hheeEEEEcCCCcEEEEe
Confidence 555551 13445678888 778888
Q ss_pred EeCCcEEEEEEe
Q 015198 377 SMDGSFYRCSFD 388 (411)
Q Consensus 377 ~~dg~~~~~~~~ 388 (411)
+.|+...||...
T Consensus 387 s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNTALVFEVP 398 (399)
T ss_pred cCCCeEEEEecC
Confidence 889999998653
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.2e-28 Score=224.49 Aligned_cols=282 Identities=13% Similarity=0.145 Sum_probs=228.7
Q ss_pred cccCCCCCCeEEEEEc-CCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWN-QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s-~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
.++-|..+.|..++|- |+.++||+++ .+.+++|++.+.... -+++|...+.++....++.++++++.| ++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD-----~s 388 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKD-----KS 388 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCC-----ce
Confidence 3456788899999984 7789999999 999999988775443 245888889998866677899999998 99
Q ss_pred EEEEECCCCcE----EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCcee-----e----EEEeccCCCcce
Q 015198 116 VIIWDDHQSRC----IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-----L----HQIETLANLRGL 177 (411)
Q Consensus 116 i~vwd~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~-----~----~~~~~~~~~~~~ 177 (411)
+++|.++++.. +.... |...|.+++++..+.-++ .|.++++|++...+. . .....|...+.+
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 99998755432 23333 899999999987654333 799999999965211 1 122457777788
Q ss_pred EEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 178 CCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
++++++. . |+++|+.|.+.+||+.. ......+.+|...|.++.|+|..+.++++|.|++ |+||.+.+..++++|.
T Consensus 469 Vaia~nd--k-LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 469 VAIAPND--K-LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE 544 (775)
T ss_pred eEecCCC--c-eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec
Confidence 8887765 3 45569999999998876 4567788999999999999999999999999999 9999999999999999
Q ss_pred CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccc
Q 015198 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS 336 (411)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (411)
+ |...|..+.|-.+|..|++++.||-|++|+++++++...+..|++
T Consensus 545 G--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-------------------------------- 590 (775)
T KOG0319|consen 545 G--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-------------------------------- 590 (775)
T ss_pred C--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc--------------------------------
Confidence 9 899999999999999999999999999999999999986666633
Q ss_pred ccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
-+...+-++. +.+++++.||.+..|.-..
T Consensus 591 ------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 591 ------------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ------------------------eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 2333445555 7889999999999996553
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=227.04 Aligned_cols=246 Identities=16% Similarity=0.252 Sum_probs=209.4
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
+...+.+|...|+.++|+|+++++++++ |++|+|||+..... ..+.+.+|...+.++.|++++..+++|+.| +
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~-~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~ 268 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR-NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----G 268 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe-EEEEecCCCCceEEEEecCCCCEEEEecCC-----C
Confidence 4455689999999999999999999999 99999999944333 334466999999999999999999999998 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCCCceE
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
+|+|||+++++++..+. |...|.+++|++++.+++ .|+.|++||+.++. ++..+..+.....+..+.+++++.+
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 99999999999999999 999999999999999998 79999999999998 5667766655423445555666777
Q ss_pred EEEecCCCCeEEEEEcC-CcceEEEeccccc---eeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-Ccc
Q 015198 189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAE 263 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~~ 263 (411)
++. +..|+.+++|+.. ...+..+.+|... +.+..+++.+.++++|+.|+. |++||+.++..+..+.+ | ...
T Consensus 349 ll~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~ 424 (456)
T KOG0266|consen 349 LLS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAA 424 (456)
T ss_pred EEE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCc
Confidence 776 6689999999987 6777888888764 444556789999999999999 99999999999988888 6 789
Q ss_pred eEEEEeCCCCCEEEEEe--CCCcEEEEEcc
Q 015198 264 IYSIALSPNVQWLAVAS--DKGTVHIFSLR 291 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s--~dg~I~vwd~~ 291 (411)
+..+.++|...++++++ .|+.|++|..+
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999988 78899999764
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-26 Score=191.46 Aligned_cols=247 Identities=12% Similarity=0.175 Sum_probs=198.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
......+.|+++.|+++|.+|++++ |..++|||...+........+.......++...++..+..+...| .+|+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----~tIr 83 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----DTIR 83 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----CceE
Confidence 3445678999999999999999988 899999999987776666555556666677666666666665555 8999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
..++.+++.++-+. |...|.+++.+|-+..++ .|++|++||++..++...+..... .+ .+++|+|.++|+ +
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi--~AfDp~GLifA~-~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PI--AAFDPEGLIFAL-A 158 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cc--eeECCCCcEEEE-e
Confidence 99999999999998 999999999999776666 799999999998888777765544 33 355667777766 4
Q ss_pred CCCCeEEEEEcCC---cceEEEe---ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc-ceEE
Q 015198 194 LQRGQVRIEHFGL---NMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYS 266 (411)
Q Consensus 194 ~~dg~i~i~~~~~---~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~ 266 (411)
...+.|++++.+. .+...+. +.....+.|.|+|||++|+.+...+. +++.|.-+|..+.++....... --..
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCccee
Confidence 4455899977653 4545543 34678899999999999999999999 9999999999999888743333 2257
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
..|+||++++++|+.||+|++|+++++.+.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 789999999999999999999999988764
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=213.32 Aligned_cols=284 Identities=14% Similarity=0.185 Sum_probs=207.1
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe--ec-CCCCEEEEEEeccCCe--EEEEecCCCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DL-KSGGFRIVEMLFRCNI--LALVGAGDNSQYP 112 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~ 112 (411)
.+.+|...|.++++.|.|..|++|+ |-.|++||+......... .+ ......+..+.|++.+ .++++|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------ 235 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------ 235 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence 3567888999999999999999999 999999999754332211 11 2233445566666654 4444444
Q ss_pred CCeEEEEECCCCcEEEEE----------e----ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCc-eeeEEEec---
Q 015198 113 PTKVIIWDDHQSRCIGEF----------A----FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-KLLHQIET--- 170 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~----------~----~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~-~~~~~~~~--- 170 (411)
...+|+| +.|..+.++ . |...+++.+|+|+.+-.+ .||++++||+... +.++.+..
T Consensus 236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 6888998 444333222 1 667889999999765443 7999999999654 34444432
Q ss_pred cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc----eEEEecccc--ceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
....+.+...+|++++..||+ |..||.|.+|+..... ...-.+|.. .|++|.|+++|++|++-+.|+. +++|
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVW 391 (641)
T ss_pred CCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeee
Confidence 233445556667777778765 7799999999975532 233367876 8999999999999999999999 9999
Q ss_pred ECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198 245 NTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS 317 (411)
Q Consensus 245 d~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
|++..+ ++....+-...-+-+.++|||+.++|++|+. .|++.+||..+-+..
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v--------------------- 450 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV--------------------- 450 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---------------------
Confidence 998754 5555554334446788999999999999874 467888887776532
Q ss_pred CCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.++.++...+..|.|+|. |+|++++.||.+++| +++
T Consensus 451 -----------------------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp 487 (641)
T KOG0772|consen 451 -----------------------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP 487 (641)
T ss_pred -----------------------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence 355566667888999999 999999999999999 555
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=201.72 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=205.1
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd 158 (411)
+.+|...+.++++.|...++++++.| ++|+|||+.+|+...++. |...|..+++++-..+++ .|+.|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46888999999999999999999998 999999999999999998 999999999999998888 799999999
Q ss_pred cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (411)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (411)
++..+.++.+.+|-..+.++.+.|.- ..|+ +|+.|.++++|+.+. ..+..+.+|..+|..+.+.|-...+++|+.|
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTl--dvl~-t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTL--DVLV-TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccc--eeEE-ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 99999999999998855555555443 4555 577999999998776 4688899999999999999888889999999
Q ss_pred CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS 317 (411)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
++ |++||++.|+...++.. |...|.+++.+|....+|+++.|. |+-|++..|.....++.|
T Consensus 299 ~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh--------------- 359 (460)
T KOG0285|consen 299 ST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH--------------- 359 (460)
T ss_pred ce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc---------------
Confidence 99 99999999999988887 888999999999999999999887 999999999866433333
Q ss_pred CCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
......++...++.+++|+.+|.+..|....
T Consensus 360 -----------------------------------------~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 360 -----------------------------------------NAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -----------------------------------------cceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 1234455566668888888889988887765
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4e-26 Score=204.74 Aligned_cols=239 Identities=18% Similarity=0.268 Sum_probs=201.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
.....|...+..+.|+|++++|++++ ++.|++|++...+..... ..+...+.++.|.+++.++++++.+ +.|
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i 117 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAFSPDGRILSSSSRD-----KTI 117 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--eccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence 34667889999999999999999999 999999999875444333 3566678889999988888888766 999
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
.+||+.+++.+..+. |...+.++.|+|++.+++ . ++.|++||+++++.+..+..+...+ .++.+++++..++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~ 195 (289)
T cd00200 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSS 195 (289)
T ss_pred EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECCCcCEEEEe
Confidence 999999888888887 888999999999887777 3 9999999999888888888776544 455555666566664
Q ss_pred cCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198 193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 193 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
+ .++.|++|+.. .+.+..+..|...+.+++|+|++.++++++.++. |++||+.+++.+..+.. |...|.+++|++
T Consensus 196 ~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~ 271 (289)
T cd00200 196 S-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP 271 (289)
T ss_pred c-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence 4 59999999877 4566666688999999999999999999888999 99999999988888886 778999999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 015198 272 NVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd 289 (411)
++++|++++.||.|++|+
T Consensus 272 ~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCEEEEecCCCeEEecC
Confidence 999999999999999996
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.9e-26 Score=213.95 Aligned_cols=244 Identities=16% Similarity=0.285 Sum_probs=204.4
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
+.....+|+++|..+.|+|++.++++|+ |-.|+||+.+..+.++. +.+|-..+..+.|++..-+++++++| .
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyPWIlSASDD-----Q 115 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYPWILSASDD-----Q 115 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCceEEEccCC-----C
Confidence 3456789999999999999999999999 99999999997665554 44899999999999999999999998 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce---------------------------
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--------------------------- 163 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~--------------------------- 163 (411)
+|+||+..+++++..+. |..-|.|..|+|...+++ .|.+|++||+...+
T Consensus 116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D 195 (1202)
T KOG0292|consen 116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD 195 (1202)
T ss_pred eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence 99999999999999998 999999999999777776 79999999983210
Q ss_pred --eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc---eEEEeccccceeEEEecCCCCEEEEEcCCC
Q 015198 164 --LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRG 238 (411)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 238 (411)
..+.+++|...+.-++|.+ ...+|+ +|++|..|++|..+... +.+..+|...|.++-|+|...++++.++|+
T Consensus 196 aVVK~VLEGHDRGVNwaAfhp--TlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHP--TLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred eeeeeeecccccccceEEecC--CcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence 1234466766555555544 444554 68899999999887654 445679999999999999999999999999
Q ss_pred eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
. |+|||+...+.+++++. .....+.++-+|..+++++| .|+-+.||.++.-
T Consensus 273 s-irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 273 S-IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred c-EEEEecccccceeeeec--cCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9 99999999999999987 66689999999999977765 5555899998743
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-26 Score=209.53 Aligned_cols=244 Identities=14% Similarity=0.207 Sum_probs=212.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
....-.+-+|.+..|-+..+++++|+ |..|+||+.++.+++.. |+.|...+.++..+|..-++.++++| -+|
T Consensus 49 ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~--FeAH~DyIR~iavHPt~P~vLtsSDD-----m~i 121 (794)
T KOG0276|consen 49 KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT--FEAHSDYIRSIAVHPTLPYVLTSSDD-----MTI 121 (794)
T ss_pred eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE--eeccccceeeeeecCCCCeEEecCCc-----cEE
Confidence 34556678899999999999999999 99999999999887655 45899999999999999999999998 999
Q ss_pred EEEECCCC-cEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 117 IIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 117 ~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
++||.+.+ .+.+++. |..-|.+++|+|... .++ .|++|++|.+....+..++++|...+.++++-+-++..+|+
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99997765 7778888 999999999999643 333 79999999999999999999999999999999999989987
Q ss_pred EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
+ |+.|.+|+||+++. .+++++.+|...|..+.|+|.-.++++|++||+ +|||+..+-+...++.- .-..+++++-
T Consensus 202 s-gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~ 277 (794)
T KOG0276|consen 202 S-GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAA 277 (794)
T ss_pred e-cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEee
Confidence 5 78999999999876 678999999999999999999999999999999 99999888877777765 4458999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcccc
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
.+.+..++.|.+.|.|. .++-..
T Consensus 278 ~k~~~~i~vG~Deg~i~-v~lgre 300 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVT-VKLGRE 300 (794)
T ss_pred cCCCCeEEEeccCCcEE-EEccCC
Confidence 99888888888888544 444433
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=220.91 Aligned_cols=242 Identities=16% Similarity=0.191 Sum_probs=189.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC----------------------------cc--eE-----------
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------------------KE--TF----------- 79 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~----------------------------~~--~~----------- 79 (411)
.|.+.|+++.|++||+|||+|+ |+.|+||.+... .. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999 999999987540 00 00
Q ss_pred -----------------EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEc
Q 015198 80 -----------------RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS 142 (411)
Q Consensus 80 -----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~ 142 (411)
...+.+|...|+++.|+.++.+|.+ +.| .+|++|++...+|++.|.|..-|+|++|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 0012578888999999988766554 555 99999999999999999999999999999
Q ss_pred C-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EE--ecc
Q 015198 143 R-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LI--NAH 215 (411)
Q Consensus 143 ~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~--~~~ 215 (411)
| |.++++ .|+.|+||++...+.+.-...+ .-++.+++.|+ |+..++ |+.+|.+++++..+..+. .. ..|
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd--Gk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD--GKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC--CceEEE-EEeccEEEEEEccCCeEEEeeeEeec
Confidence 9 556666 8999999999887776655554 44555555555 555544 889999999877653322 11 111
Q ss_pred ------ccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 216 ------DSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 216 ------~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
...|+.+.|.|... .+++.+.|.. |||||.++.+++..|++......-....|+.||++|+++++|..|+||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 23799999987543 5777788999 999999999999999986555566778999999999999999999999
Q ss_pred Eccccc
Q 015198 289 SLRVRV 294 (411)
Q Consensus 289 d~~~~~ 294 (411)
+++...
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 985544
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=186.82 Aligned_cols=238 Identities=14% Similarity=0.166 Sum_probs=199.6
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd 158 (411)
+..+...+..+.|+.++.+.++++.| .+|++|+...+.+++++. |..+|..++.+.|...++ .|..|.+||
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34677788899999999999999988 999999999999999998 999999999999988888 799999999
Q ss_pred cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC---cceEEEeccccceeEEEecCCCCEEEEEc
Q 015198 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGLLLATAS 235 (411)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (411)
+.+|+.++.+.+|...+. ++.++.+...+ ++|+.|..+++|+-+. ++++.+......|.++.++ +..|++|+
T Consensus 88 V~TGkv~Rr~rgH~aqVN--tV~fNeesSVv-~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVN--TVRFNEESSVV-ASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred cccCeeeeecccccceee--EEEecCcceEE-EeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999999999999988554 55555555555 4688999999999765 6677777888899998874 56799999
Q ss_pred CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccC
Q 015198 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNH 315 (411)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (411)
.||+ +|.||++.|......-+ .+|++++|++|++.+++++.|+++++.|-.+|+-.+....|.
T Consensus 163 ~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk------------ 225 (307)
T KOG0316|consen 163 VDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK------------ 225 (307)
T ss_pred cCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc------------
Confidence 9999 99999999988655544 389999999999999999999999999999999765444440
Q ss_pred CCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 316 SSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
....+..|++... ..++.+++||.||+|.|..
T Consensus 226 ------------------------------------------n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 226 ------------------------------------------NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ------------------------------------------cceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 0123456778776 6777777899999999986
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=192.62 Aligned_cols=239 Identities=13% Similarity=0.126 Sum_probs=200.1
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKV 116 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i 116 (411)
.+.+|.+.|..+.|.+|++.|++++ |.+|+.||+++++...+.. .|...+..+....-+ .++.++++| +++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD-----~t~ 157 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDD-----GTL 157 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCC-----ceE
Confidence 3569999999999999999999998 9999999999977665543 555555566554434 566677777 999
Q ss_pred EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
++||+++..+++++..+..++++.|..++..+. .|+.|++||++....+..+.+|..++..+.+++ ++.++.. -
T Consensus 158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~--~gs~lls-n 234 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR--YGSFLLS-N 234 (338)
T ss_pred EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc--CCCcccc-c
Confidence 999999999999999999999999998876666 799999999999999999999998665555554 5556654 6
Q ss_pred CCCCeEEEEEcCC-----cceEEEecccc----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198 194 LQRGQVRIEHFGL-----NMIKLINAHDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (411)
Q Consensus 194 ~~dg~i~i~~~~~-----~~~~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (411)
+.|.++++|+.+. +++..+.+|.. .....+|+|+++.+.+|+.|.. +++||......+..+.+ |.+.|
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h~gsv 311 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--HYGSV 311 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--cceeE
Confidence 6899999998764 45777777643 3456789999999999999999 99999988889989988 89999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
.+++|+|...+|.+++.|.+|++=.+
T Consensus 312 n~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 312 NEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEeeecCCCcEEEEeccCceeEeecc
Confidence 99999999999999999999987443
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=212.19 Aligned_cols=282 Identities=15% Similarity=0.121 Sum_probs=234.4
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
...+|...|.+++++.+...+++|..+.++||+.++.+.+.... ...+.+..|-|...+++.|... |.+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~-----Gel~v 438 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKN-----GELQV 438 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccC-----CceEE
Confidence 57899999999999999999999999999999999877665543 2378888999999999998887 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC-----ceeeEEEecc-----CCCcceEEEccCC
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-----LKLLHQIETL-----ANLRGLCCLSHHS 184 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~ 184 (411)
+|+.+...+.+++ |.+.|.+++..||+..++ .|.+|++||+.- +...+.+..+ .-...+.+++.+|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9999999888888 999999999999998877 799999999721 2111112111 1122578888899
Q ss_pred CceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198 185 STSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
++.+||+ +--|.+|++ +..+.+....+.+|.-||.|+.++||+++++||+.|.+ |+||-+.-|.+-+.+-+ |...
T Consensus 519 dgk~LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdDS 594 (888)
T KOG0306|consen 519 DGKLLAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDDS 594 (888)
T ss_pred CCcEEEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccCc
Confidence 9999987 668999999 45556777888999999999999999999999999999 99999999999989888 8889
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (411)
|.++.|-|+...+.+++.|+.|+-||-..-+..+.+..|
T Consensus 595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H----------------------------------------- 633 (888)
T KOG0306|consen 595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH----------------------------------------- 633 (888)
T ss_pred eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-----------------------------------------
Confidence 999999999999999999999999998887776554444
Q ss_pred cccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
...+.+.+.+|+ +-+++++.|-++.+|....
T Consensus 634 ---------------~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 ---------------HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---------------hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 123445677777 4666666789999998775
No 54
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.1e-26 Score=210.77 Aligned_cols=278 Identities=14% Similarity=0.205 Sum_probs=222.9
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEE-EeccC-CeEEEEecCCCCCCCC
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRC-NILALVGAGDNSQYPP 113 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~s~~~d~~~~d 113 (411)
...+.+|...|..+++.+.. ++++++ ||++++|+-...+..-...+.++...+.. ++|.+ +.-.++.|+.|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D----- 80 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD----- 80 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc-----
Confidence 34688999999999987655 677777 99999999765443333334444444444 55553 44457777777
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
.+|.+|.+....++..+. |+..|.++....++.++. .|.++++|-. +++...+.+|...++ ++..-+++.++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVW--Av~~l~e~~~v- 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVW--AVASLPENTYV- 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchhee--eeeecCCCcEE-
Confidence 999999999999999998 999999999999988665 8999999975 466667888887555 44445555333
Q ss_pred EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
+|+.|.+|++|.- ++.++.+.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.+..+ |..-|+++...
T Consensus 156 -TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~ 228 (745)
T KOG0301|consen 156 -TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA 228 (745)
T ss_pred -eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence 6889999999976 788999999999999999988764 788999999 999998 8999989888 89999999988
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (411)
+++..++++++|++++||+.. ++.
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~------------------------------------------------------ 252 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECV------------------------------------------------------ 252 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceE------------------------------------------------------
Confidence 888999999999999999987 322
Q ss_pred ceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecC
Q 015198 351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV 390 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~ 390 (411)
+.+.+|.-....+..-.++.|++||+||.|+||..++.
T Consensus 253 --q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 253 --QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred --EEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence 46778875555555556799999999999999999853
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5.2e-26 Score=195.63 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=215.2
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc---CCeEEEEecCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR---CNILALVGAGDNSQY 111 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~~ 111 (411)
......-|++.|.++... ++.+++|+ ||.+++|+... +..... .+|...+.++.+. +....+++++.|
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~--~Ght~~ik~v~~v~~n~~~~~fvsas~D--- 168 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTI--VGHTGPIKSVAWVIKNSSSCLFVSASMD--- 168 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEE--ecCCcceeeeEEEecCCccceEEEecCC---
Confidence 334566799999999988 77999999 99999999875 333333 3777777765554 333468899988
Q ss_pred CCCeEEEEECCCCcEEEEE-----eecCceeEEEEcCCeEEEE---EcCeEEEEEcC-----------------------
Q 015198 112 PPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV----------------------- 160 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~----------------------- 160 (411)
.++++|..+.++..... .|...|.++...+++..++ .|..|.+|+..
T Consensus 169 --qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 169 --QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred --ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 99999998877554332 3899999999999999988 79999999931
Q ss_pred --CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC
Q 015198 161 --DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG 238 (411)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg 238 (411)
+..++-.+.+|..++..+.|... -.+++++.|.+|+.|+........-......+.++.++|..++|++|+.|.
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d~----~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr 322 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSDA----TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR 322 (423)
T ss_pred ccccCceEEecccccceeeEEEcCC----CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC
Confidence 12345566778876665555552 245678899999999887654444444577899999999999999999999
Q ss_pred eEEEEEECCCCc---eEEEEeCCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccc-cCCCCCCCCCCCCcccccc
Q 015198 239 TLIRIFNTVDGT---RLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELL 313 (411)
Q Consensus 239 ~~I~vwd~~~~~---~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~ 313 (411)
. |++||.+++. ..+++.+ |.+.|.++.|+|... +|++++.|+++++||+++.+ ..-++..|
T Consensus 323 ~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h----------- 388 (423)
T KOG0313|consen 323 H-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH----------- 388 (423)
T ss_pred c-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----------
Confidence 9 9999998763 3556777 888999999999654 68899999999999999887 44333333
Q ss_pred cCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 314 NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
.+-+..+-|.....|++||.|..++|++-.+
T Consensus 389 ---------------------------------------------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 389 ---------------------------------------------NDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ---------------------------------------------CceEEEEeccCCceEEeccCcceEEEecccc
Confidence 2344556687778999999999999997553
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=201.94 Aligned_cols=276 Identities=14% Similarity=0.160 Sum_probs=217.7
Q ss_pred cCCCCCCeEEEEEcCCCCE-EEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 40 SDVDEIELISVSWNQDYGC-FAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~-la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
.....+.|.+++|+|...+ +|+.+.-.+.||+..+..... .+..-...+.+..|..||.+++.|+.. |.|+|
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~s-----G~V~v 94 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDES-----GHVKV 94 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCc-----CcEEE
Confidence 3344568999999997654 677778889999987643322 122455678889999999999999988 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
+|+++...++.+. |..++..+.|+|++..++ .|+.+++||+.+......+.+|.. .+.+.++.|.+..++++|
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTG 172 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEec
Confidence 9977766777776 999999999999776665 678899999998887557777877 556666666666777889
Q ss_pred CCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeCC
Q 015198 194 LQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 194 ~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp 271 (411)
+.||.|++|+.+.. ....-..|..+|..+.+-|.|.++++++.. . |+|||+-+|.. +..+.. |...|+|+.+..
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~-vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s 248 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-S-VKVWDLTTGGQLLTSMFN--HNKTVTCLRLAS 248 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-e-EEEEEecCCceehhhhhc--ccceEEEEEeec
Confidence 99999999998765 333335699999999999999999998855 3 99999986654 434433 788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccc
Q 015198 272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS 351 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (411)
++..|++++-|+.|++||+.+-+..
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv------------------------------------------------------- 273 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVV------------------------------------------------------- 273 (487)
T ss_pred CCceEeecccccceEEEEccceEEE-------------------------------------------------------
Confidence 9999999999999999997776633
Q ss_pred eEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEE
Q 015198 352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRC 385 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~ 385 (411)
..++.|. .+..++.+++ ..+++|-+||.+.+-
T Consensus 274 -~s~~~~~-pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 274 -HSWKYPG-PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred -Eeeeccc-ceeeEEecCCCceEEEecccceeeee
Confidence 3566665 4555677776 778888889988776
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-25 Score=181.52 Aligned_cols=237 Identities=18% Similarity=0.217 Sum_probs=195.7
Q ss_pred eecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCC---CcEEEEEe--ecCceeEEEEcCCeEEEE---Ec
Q 015198 81 RDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ---SRCIGEFA--FRSDVRSVKLSRDRIVVV---LE 151 (411)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~---~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d 151 (411)
..+.+|...+..++|+|. +.+|++++.| +.|++|+... -.+...+. |+..|++++|+|.|++++ .|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 335577778999999998 8999999998 9999999874 34444444 899999999999999999 79
Q ss_pred CeEEEEEcCC--ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEEeccccceeEEEec
Q 015198 152 HKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLT 225 (411)
Q Consensus 152 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~l~~s 225 (411)
.++.||.-.. .+++..+++|.+.+.+++ ++.+|.+||+ ++.|+.|-||.... .+...++.|...|..+.|+
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Va--ws~sG~~LAT-CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVA--WSASGNYLAT-CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEE--EcCCCCEEEE-eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 9999998653 478899999998655555 5556678876 67999999998763 5678889999999999999
Q ss_pred CCCCEEEEEcCCCeEEEEEECC---CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 226 LDGLLLATASTRGTLIRIFNTV---DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~---~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
|...+|++++.|++ |++|+-. .-++.+++.+ |...|++++|++.|..|++++.|++++||...+.-...
T Consensus 160 Pt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~----- 231 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM----- 231 (312)
T ss_pred CCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh-----
Confidence 99999999999999 9999765 2357888888 77799999999999999999999999999976432110
Q ss_pred CCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcE
Q 015198 303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSF 382 (411)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~ 382 (411)
.....+.++|. ++.|.++|.|+.+
T Consensus 232 -------------------------------------------------------~sr~~Y~v~W~-~~~IaS~ggD~~i 255 (312)
T KOG0645|consen 232 -------------------------------------------------------HSRALYDVPWD-NGVIASGGGDDAI 255 (312)
T ss_pred -------------------------------------------------------cccceEeeeec-ccceEeccCCCEE
Confidence 11356678887 7899999999999
Q ss_pred EEEEEec
Q 015198 383 YRCSFDP 389 (411)
Q Consensus 383 ~~~~~~~ 389 (411)
.+|.-..
T Consensus 256 ~lf~~s~ 262 (312)
T KOG0645|consen 256 RLFKESD 262 (312)
T ss_pred EEEEecC
Confidence 9997763
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.6e-26 Score=214.52 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=225.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
.+...+.+..|. ..+++++. +++|++|+..+...+. ..+.+|...+..+.+...+..+++|+.| .++++||
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd 277 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWD 277 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEecCCCEEEEEecC-----CcEEeEe
Confidence 367788999998 45777888 9999999998855444 3366899999999988777888899988 9999999
Q ss_pred CCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198 121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
..+|++...+. |...|.++...+....-. .|.+|++|++.+++.++.+.+|..++..+.+. . .+++ +|+.|+.
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~--~~lv-sgs~d~~ 352 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E--PLLV-SGSYDGT 352 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C--CEEE-EEecCce
Confidence 99999999999 999999999887665554 89999999999999999999888866655555 2 3444 5889999
Q ss_pred EEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198 199 VRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWL 276 (411)
Q Consensus 199 i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (411)
|++|+.. ++++..+.+|..+|.++.+.+. ..+++|+.|+. |++||+++. +++.++.. |...+..+.+ .+++|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~L 426 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFL 426 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--cccee
Confidence 9998865 6889999999999999988765 88999999999 999999999 89999988 7777766654 56899
Q ss_pred EEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEE
Q 015198 277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH 356 (411)
Q Consensus 277 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (411)
++++.|++|++||..++++.+.+...
T Consensus 427 vs~~aD~~Ik~WD~~~~~~~~~~~~~------------------------------------------------------ 452 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEGECLRTLEGR------------------------------------------------------ 452 (537)
T ss_pred EeccccccEEEeecccCceeeeeccC------------------------------------------------------
Confidence 99999999999999999987643331
Q ss_pred eCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 357 IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
+.+.+..+++. +..+++++.||.+++|.+..
T Consensus 453 -~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 -HVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -CcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 11233334444 58899999999999998875
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.7e-27 Score=203.06 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=204.5
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
......|.+.|..+.|-++...|++|+ |..|++|+....+..+...+.+....+..+.|.+++..+++.+.| +.
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-----~~ 242 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-----KN 242 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-----Cc
Confidence 345788999999999999999999999 999999999876644555566777789999999999888888887 99
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
+++|++...+...++. |...|+++.|......++ .|.+|++||+....+.+++...... ..++.. ...++
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c-nDI~~~-----~~~~~ 316 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQC-NDIVCS-----ISDVI 316 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccc-cceEec-----ceeee
Confidence 9999999999999998 999999999988777555 7999999999988887776543322 222222 23455
Q ss_pred ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC--CcceEEEE
Q 015198 192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIA 268 (411)
Q Consensus 192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~ 268 (411)
+|-.|++|++|+.. ..+......+. .|+++..+++|..|.+++.|.. +.+.|+++.+....+..... ....+.+.
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeE
Confidence 78899999999955 45566666554 9999999999999999999999 99999999988877764322 23588999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
|||++.|+++|+.||.|+||++.+++...
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 99999999999999999999999998764
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=5.9e-25 Score=224.47 Aligned_cols=236 Identities=14% Similarity=0.225 Sum_probs=191.3
Q ss_pred CCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vw 119 (411)
+...|.+++|++. +.+|++++ |+.|+|||+.+.+.... +..|...+.++.|++ ++.++++++.| +.|++|
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iW 603 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLW 603 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEE
Confidence 3567899999875 78899999 99999999987554333 447888899999996 77889999988 999999
Q ss_pred ECCCCcEEEEEeecCceeEEEEc-CCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 120 DDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
|+.++..+..+.+...+.++.|+ +++..++ .|+.|++||+++.+ .+..+..|...+..+.+. ++..|++ ++
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~---~~~~lvs-~s 679 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLVS-SS 679 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe---CCCEEEE-EE
Confidence 99999999888877889999995 4576666 79999999998765 466677777755555553 3345654 66
Q ss_pred CCCeEEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe-----------
Q 015198 195 QRGQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR----------- 256 (411)
Q Consensus 195 ~dg~i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~----------- 256 (411)
.|+.|++|+... ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+.
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence 899999998752 567788999999999999999999999999999 9999987665443321
Q ss_pred CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
...+...|.+++|+|++..|++|+.||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1124457999999999999999999999999996
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=4.6e-27 Score=207.96 Aligned_cols=241 Identities=12% Similarity=0.159 Sum_probs=195.5
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPP 113 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d 113 (411)
......+|..+|..++|+++|..|++++ |+.+++||+++++.....++ .....++.|+|+. ..++.|+.|
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd----- 321 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSD----- 321 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCC-----
Confidence 3455789999999999999999999999 99999999999877666543 3345566677766 556666665
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+.|+.||+++++.++++. |-+.|..+.|-+++..++ .|+.++||+.+.+-.++.+... ....+-++..+|++.++
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWF 400 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCee
Confidence 999999999999999987 899999999999998888 7899999999877665544221 12244556666677788
Q ss_pred EEecCCCCeEEEEEcC----CcceEEEeccc--cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198 190 ACPGLQRGQVRIEHFG----LNMIKLINAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~----~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
++ -+.|+.|.++... ....+.+++|. +.-..+.|||||.+|++|+.||. +.+||.++.+++..+.. |.++
T Consensus 401 ~a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ 476 (503)
T KOG0282|consen 401 AA-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQP 476 (503)
T ss_pred hh-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcc
Confidence 75 5688888885533 34556778885 44567899999999999999999 99999999999999998 8889
Q ss_pred eEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015198 264 IYSIALSPNV-QWLAVASDKGTVHIFS 289 (411)
Q Consensus 264 v~~l~~spdg-~~l~s~s~dg~I~vwd 289 (411)
+..+.|+|.. ..+|+++.||.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999954 4789999999999996
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.6e-25 Score=214.65 Aligned_cols=291 Identities=16% Similarity=0.211 Sum_probs=226.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe---CCcEEEEecCCCcc----------eEEeecCCCCEEEEEEeccCCeEEEEecCC
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKE----------TFRRDLKSGGFRIVEMLFRCNILALVGAGD 107 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 107 (411)
..++..|.++..+|||..+|+|+ |+.++||+.+.... ........|...+.++.|++|+.+|++|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 33456799999999999999998 89999999864210 011112477888999999999999999999
Q ss_pred CCCCCCCeEEEEECCC------------------CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee
Q 015198 108 NSQYPPTKVIIWDDHQ------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~ 165 (411)
| +.|.||+... .+++..+. |...|..++|+|++.+++ .|++|.+|+..+.+.+
T Consensus 90 D-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 90 D-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred c-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 9 9999999652 12455555 999999999999999999 7999999999999999
Q ss_pred EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEecc------ccceeEEEecCCCCEEEEEcC--
Q 015198 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAH------DSHIACFTLTLDGLLLATAST-- 236 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-- 236 (411)
..+.+|...+ -.++++|-|+++|+- +.|++|++|.... ...+.+..+ ...+..+.|+|||++|++...
T Consensus 165 ~vl~~H~s~V--KGvs~DP~Gky~ASq-sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 165 KVLRGHQSLV--KGVSWDPIGKYFASQ-SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeeecccccc--cceEECCccCeeeee-cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999998844 456667777899874 5899999998443 445555443 345788999999999998643
Q ss_pred --CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-----CC------------EEEEEeCCCcEEEEEccccccCC
Q 015198 237 --RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQ------------WLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 237 --dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
-.. +.|.+-.+.+.-..|.+ |.+++.++.|+|. .+ .+|+|+.|++|.||.....++.-
T Consensus 242 ~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 242 GGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred CCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 234 88998877787788888 8889999999971 11 57899999999999986665431
Q ss_pred CCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEE
Q 015198 298 DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIV 376 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (411)
.-..+-.-.+..++|+++ -.|+++
T Consensus 319 -------------------------------------------------------vi~~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 319 -------------------------------------------------------VIHNLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred -------------------------------------------------------hhhhhhcCceeeeeEcCCCCeEEEE
Confidence 001112235677899999 668888
Q ss_pred EeCCcEEEEEEecCCCCcEEE
Q 015198 377 SMDGSFYRCSFDPVHGGEMLQ 397 (411)
Q Consensus 377 ~~dg~~~~~~~~~~~~~~~~~ 397 (411)
+.||.|+...|++.+-|+.+-
T Consensus 344 S~DGtV~~i~Fee~ElG~~ls 364 (942)
T KOG0973|consen 344 SLDGTVALIHFEEKELGVALS 364 (942)
T ss_pred ecCCeEEEEEcchHHhCcccC
Confidence 889999999999877776654
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=194.25 Aligned_cols=248 Identities=13% Similarity=0.218 Sum_probs=202.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee------cCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD------LKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
-+....+.|..|+|||++|++|+ ||-|.+||..+++...... |--+...+.++.|+.+...+++|+.|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD----- 284 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD----- 284 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-----
Confidence 35677889999999999999999 9999999998754322111 12356678999999999999999998
Q ss_pred CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
|.|++|.+.+|.|++.+. |...|+++.|+.|+..+. .|.++++.-+.+|++++.+.+|...+.-.. +.++|..
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~--ft~dG~~ 362 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT--FTDDGHH 362 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE--EcCCCCe
Confidence 999999999999999997 999999999999998877 799999999999999999999988555444 4556667
Q ss_pred EEEecCCCCeEEEEEcCC-cceEEEec--cccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcc
Q 015198 189 LACPGLQRGQVRIEHFGL-NMIKLINA--HDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAE 263 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~-~~~~~~~~--~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~ 263 (411)
+++ ++.||+|++|+... .++.+++. ...+|+.+..-|.. ..++.+...++ |+|.++ .|+.++.+..+. ..+.
T Consensus 363 iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 363 IIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGGD 439 (508)
T ss_pred EEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCCc
Confidence 765 66899999998654 56666653 45678888777754 57888888888 999997 788888887543 2345
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED 298 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 298 (411)
..+...+|.|.++++.++|+.++-|.+.+|+-...
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 66778999999999999999999999999986643
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.4e-25 Score=214.95 Aligned_cols=260 Identities=17% Similarity=0.164 Sum_probs=211.3
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC------Cc----------ceEEeecCCCCEEEEEEeccCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FK----------ETFRRDLKSGGFRIVEMLFRCN 98 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~ 98 (411)
..-+...|.+.|+|+.|+|||++||+|+ |+.|.||.... +. ......+.+|...+..+.|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3455788999999999999999999999 99999999872 10 0112334689999999999999
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC-
Q 015198 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN- 173 (411)
Q Consensus 99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~- 173 (411)
+.++++++.| ++|.+||..+.+.+..+. |...|..+.|.|-|++++ .|++|++|++.+....+.+..+..
T Consensus 141 ~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 141 DSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred ccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 9999999998 999999999999999988 999999999999999999 799999999887777777755432
Q ss_pred ---CcceEEEccCCCceEEEEecCCCC---eEEEEEcCC-cceEEEeccccceeEEEecCC-------------CC----
Q 015198 174 ---LRGLCCLSHHSSTSVLACPGLQRG---QVRIEHFGL-NMIKLINAHDSHIACFTLTLD-------------GL---- 229 (411)
Q Consensus 174 ---~~~~~~~~~~~~~~~l~~~g~~dg---~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~-------------g~---- 229 (411)
......++|+|||.+|++.-..++ .+.|-.+.. +.-..+-+|.+++.+++|+|. ..
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 234678899999999987543333 455544433 445678899999999999982 11
Q ss_pred EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
.+|+|+.|+. |-||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+-++.++.+
T Consensus 296 i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~e 366 (942)
T KOG0973|consen 296 IAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEE 366 (942)
T ss_pred EEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChh
Confidence 6789999999 999998777776555432 4568999999999999999999999999999988766655544
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-26 Score=197.72 Aligned_cols=244 Identities=14% Similarity=0.205 Sum_probs=193.7
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
+.....+|..+|..+.|+||.++|++++ +..+.+||+.++....... +++...+.+.+|.||+..+++|+.| +
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~d-----r 334 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPD-----R 334 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCC-----C
Confidence 4556789999999999999999999988 9999999999866544332 2446788899999999999999998 9
Q ss_pred eEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
.+..||+.. ..+...+ ....|.++++.+||+++. .|..|++|+.++......+..+. .+..++.+.+++++
T Consensus 335 ~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 335 TIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLA 410 (519)
T ss_pred cEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEE
Confidence 999999654 3344443 346799999999999887 79999999987765554444333 35556666666666
Q ss_pred EEecCCCCeEEEEEcCC-cceEEEeccccc--eeEEEec-CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSH--IACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~--i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
++ .-.+..+.+|+... ..++.+.+|... +..-+|. -+..++++|++|+. |+||+..+|+++.++.+ |...|+
T Consensus 411 Lv-nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN 486 (519)
T KOG0293|consen 411 LV-NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN 486 (519)
T ss_pred EE-EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence 55 45788999998774 456667788654 3333454 35579999999999 99999999999999999 889999
Q ss_pred EEEeCCC-CCEEEEEeCCCcEEEEEcccc
Q 015198 266 SIALSPN-VQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 266 ~l~~spd-g~~l~s~s~dg~I~vwd~~~~ 293 (411)
+++|+|. -.++|++++||+|+||.....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999995 457999999999999988755
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.4e-25 Score=203.49 Aligned_cols=242 Identities=14% Similarity=0.130 Sum_probs=204.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
+.+.|+++.|+++|.+||+|. +|.|.|||....+....... .|...+-++.|. ...+.+|+.+ +.|..+|+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~--~~~lssGsr~-----~~I~~~dv 287 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN--SSVLSSGSRD-----GKILNHDV 287 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc--CceEEEecCC-----CcEEEEEE
Confidence 378999999999999999999 99999999987666554432 277888888888 5667777877 99999999
Q ss_pred CCCcEEEE-Ee-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 122 HQSRCIGE-FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 122 ~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
+..+.... +. |...|..++|++|+.+++ .|+.+.|||....+++..+..|...+..++|+|...+.+....|+.|
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 88776555 55 899999999999999999 79999999998888999999999988888888877664433445689
Q ss_pred CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (411)
Q Consensus 197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (411)
+.|++|+...............|..|.|++..+.|++ |..++. |.||+..+.+.+..+.+ |...|..++++|||.
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGE 444 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCC
Confidence 9999999876555544556789999999999876665 345667 99999999999999988 888999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccc
Q 015198 275 WLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 275 ~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.+++|+.|.++++|++-...+
T Consensus 445 ~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 445 TIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred EEEEecccCcEEeccccCCCC
Confidence 999999999999999987643
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=8.3e-26 Score=184.25 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=230.2
Q ss_pred ccCCCCCCeEEEEEcC---CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 39 FSDVDEIELISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~---~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
...+|..+|..++|+| +|-+|++++ |+.-.+-+-+++..+-. |.+|...+.....+.+....+++..| -
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt--feghkgavw~~~l~~na~~aasaaad-----f 81 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT--FEGHKGAVWSATLNKNATRAASAAAD-----F 81 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe--eeccCcceeeeecCchhhhhhhhccc-----c
Confidence 5689999999999985 788899999 99988888888775544 55888999999888888888888887 9
Q ss_pred eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
+-+|||.-+|..+..+.|+.-|.+++|+.|..+++ .+.-+++||++.. .+...+.+|...+..+-|.... +.|+
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD--~~iL 159 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED--KCIL 159 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC--ceEE
Confidence 99999999999999999999999999999999888 5677999999764 4556778888766655555443 3344
Q ss_pred EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
++ ..|++|++|+........-.....+|+++.++++|++|.++. .+. |.+||..+..+++.++. +..|.+..++
T Consensus 160 SS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k~---P~nV~SASL~ 233 (334)
T KOG0278|consen 160 SS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYKM---PCNVESASLH 233 (334)
T ss_pred ee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeeccC---cccccccccc
Confidence 43 689999999876544433334678899999999999887765 345 99999999999988874 5579999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (411)
|+...+++|++|..++.||..+++...-.
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~--------------------------------------------------- 262 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSY--------------------------------------------------- 262 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence 99999999999999999999999876410
Q ss_pred ceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198 351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG 392 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~ 392 (411)
.+-+.+.+-++.|+|+ ....+++.||.+++|+..+.+-
T Consensus 263 ----nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 ----NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ----ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 1223356778899999 5566677799999999998543
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.2e-26 Score=194.87 Aligned_cols=236 Identities=13% Similarity=0.277 Sum_probs=188.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
..+.||.+.|.|+.|. .+.+++|+ |.+|+|||+++++.+... + .|...+..+.|+.+ ++++++.| ..+
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-i-hHceaVLhlrf~ng--~mvtcSkD-----rsi 299 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-I-HHCEAVLHLRFSNG--YMVTCSKD-----RSI 299 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-h-hhcceeEEEEEeCC--EEEEecCC-----cee
Confidence 3468999999999995 45888999 999999999996654333 3 77788888888765 46677777 999
Q ss_pred EEEECCCCcEEE---EEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 117 IIWDDHQSRCIG---EFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 117 ~vwd~~~~~~~~---~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
.+||+.....+. .+. |...|+.+.|+..-..-+ .|.+|++|++.+++.++++.+|.. .+.|+.+.+ + +++
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQYr~--r-lvV 374 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQYRD--R-LVV 374 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc--cceehhccC--e-EEE
Confidence 999987765322 222 889999999987633333 799999999999999999999987 445555543 3 455
Q ss_pred ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce---------EEEEeCCCCC
Q 015198 192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---------LQEVRRGVDR 261 (411)
Q Consensus 192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---------~~~~~~~~~~ 261 (411)
+|+.|.+|++|+.. +.+++.+++|+.-|.++.| |.+.+++|+.||+ |+|||+.++.. +.++.. |.
T Consensus 375 SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~--hs 449 (499)
T KOG0281|consen 375 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE--HS 449 (499)
T ss_pred ecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhhhh--cc
Confidence 79999999998865 6788999999999999999 5568999999999 99999987642 333344 78
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+.|..++|. ...+++++.|.+|.|||+..+-..
T Consensus 450 gRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 450 GRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 899999994 577999999999999999887643
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=187.47 Aligned_cols=235 Identities=12% Similarity=0.169 Sum_probs=200.6
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
..|.++...|....+++|+ |..+.++|....+.... +.+|...+..+.++++...+++++.| ..|+||....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~--~~Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT--LKGHTKKITSVKFHKDLDTVITASAD-----EIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhh--ccCcceEEEEEEeccchhheeecCCc-----ceEEeecccc
Confidence 5688899888878899999 98999999887444333 56999999999999999999999988 9999999777
Q ss_pred CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeE
Q 015198 124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV 199 (411)
Q Consensus 124 ~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i 199 (411)
........ |..+|+.+..+|.|.+++ .|++..+.|++++..+.........+...+..++|||.++. +|..||.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCCceE
Confidence 66555555 999999999999999998 78999999999999887776655667788888999987765 58899999
Q ss_pred EEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198 200 RIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (411)
Q Consensus 200 ~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (411)
+||+... ..+..|.+|.++|..++|+.+|-+|+++.+|+. |++||++..+...++... ....+.++.|.+.|.+|+.
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~ 449 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGI 449 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEe
Confidence 9998765 467788999999999999999999999999999 999999999888888764 3347999999999999999
Q ss_pred EeCCCcEEEEE
Q 015198 279 ASDKGTVHIFS 289 (411)
Q Consensus 279 ~s~dg~I~vwd 289 (411)
++.|=+|++++
T Consensus 450 ~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 450 AGSDLQVYICK 460 (506)
T ss_pred ecceeEEEEEe
Confidence 97765555554
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4e-25 Score=180.71 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=187.2
Q ss_pred CCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vw 119 (411)
-.+.+..++|++.. ..+++++ ||.++|||...... ....++.|...+.++.|++ +...+++++.| ++|++|
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKLW 132 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWD-----GTIKLW 132 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccC-----CceEee
Confidence 46778999999874 3455555 99999999754333 2333678999999999987 44556666888 999999
Q ss_pred ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
+....+.++++. |...|....|+|...-++ .|+.+++||++.......+..|.. .+++..++.-...++++|+
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG 210 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC
Confidence 999999999998 899999999999654333 799999999976444444888875 4455555544445666788
Q ss_pred CCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeC
Q 015198 195 QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 195 ~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~s 270 (411)
.|+.|+.|+.+. .++..+.+|.-.|..++|+|.. .+||+++.|-+ +||||...+.- +.+... |..-+..+.|+
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dws 287 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDWS 287 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccccc
Confidence 999999999875 5678889999999999999975 48999999999 99999875543 334443 78889999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEc
Q 015198 271 P-NVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 271 p-dg~~l~s~s~dg~I~vwd~ 290 (411)
+ ++.++|+++.|+.++||+-
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 7 5678999999999999983
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.5e-26 Score=185.27 Aligned_cols=243 Identities=10% Similarity=0.116 Sum_probs=198.2
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
.....+|.+.|++..++.+-...|++. |=+-+|||.-++..+... .|..-+..++|+.+...+++|+.+ ..
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf---~hkhivk~~af~~ds~~lltgg~e-----kl 123 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF---EHKHIVKAVAFSQDSNYLLTGGQE-----KL 123 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh---hhhheeeeEEecccchhhhccchH-----HH
Confidence 355789999999999999998889988 999999999887665443 566667889999999999999998 99
Q ss_pred EEEEECCCCc-EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 116 VIIWDDHQSR-CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 116 i~vwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
++|+|++..+ +..++. |.+.|..+.|....+.++ .|++|++||.++++.++.+.... ++..+.++. ++.+|.
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~--dG~ilT 200 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQ--DGRILT 200 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeecc--CCCEEE
Confidence 9999987654 344555 899999999987666555 79999999999999999997654 344455554 555664
Q ss_pred EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE-eCCCCCcceEEEE
Q 015198 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIA 268 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~ 268 (411)
++ ..+.|.+|+... ..++.+ .-...|.+..++|+...+++|++|.. ++.||..+|+.+..+ ++ |.++|.++.
T Consensus 201 ia--~gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVr 274 (334)
T KOG0278|consen 201 IA--YGSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVR 274 (334)
T ss_pred Ee--cCceeEEeccccccceeec-cCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEE
Confidence 43 567899988665 333333 34567888999999999999999999 999999999998886 44 889999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
|+|||...++|++||+|++|....++..
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999887654
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=192.57 Aligned_cols=288 Identities=10% Similarity=0.103 Sum_probs=217.5
Q ss_pred cCCCCCCccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC
Q 015198 30 ASFGHPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD 107 (411)
Q Consensus 30 ~~~~~~~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 107 (411)
..|..|....+.+|.+.|.|++=+|.. ..+++|+ ||.|+|||+........ +..|...+..+.+.. ..++++++
T Consensus 52 R~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--f~AH~G~V~Gi~v~~--~~~~tvgd 127 (433)
T KOG0268|consen 52 RVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--FKAHEGLVRGICVTQ--TSFFTVGD 127 (433)
T ss_pred HHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--eecccCceeeEEecc--cceEEecC
Confidence 445667777889999999999999987 7899999 99999999987544443 446666666666666 55666777
Q ss_pred CCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 108 NSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
| .+|+.|.++- ..++++.....+..+.-+..+..++ ....|.|||.....++..+......+ .++.++|-.
T Consensus 128 D-----KtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti--~svkfNpvE 199 (433)
T KOG0268|consen 128 D-----KTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI--SSVKFNPVE 199 (433)
T ss_pred C-----cceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCce--eEEecCCCc
Confidence 6 9999999654 5777777788888888777777777 56689999998888888888776644 444455443
Q ss_pred eEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcce
Q 015198 187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEI 264 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v 264 (411)
..|+.++..|+.|.|++.. ..+++.+. -...-+.|+|+|++-.+++|++|.. ++.||++..+ .+....+ |...|
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV 275 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAV 275 (433)
T ss_pred chheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeE
Confidence 4444456689999995544 45554433 2344578999998888999999999 9999998764 4555566 88899
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK 344 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (411)
.++.|||.|+-+++|+.|.+|+||.++.+..++. +..+
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi--------------------------------------Yhtk---- 313 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI--------------------------------------YHTK---- 313 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------------------hhHh----
Confidence 9999999999999999999999999998875431 1100
Q ss_pred ccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
.+ ..+.++.|+.+ ..|++|+.||.|.+|.-.
T Consensus 314 -----------RM--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 314 -----------RM--QHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -----------hh--heeeEEEEeccccEEEecCCCcceeeeecc
Confidence 00 24567889998 556666778999999765
No 73
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=8e-24 Score=201.13 Aligned_cols=226 Identities=14% Similarity=0.121 Sum_probs=175.8
Q ss_pred ccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCe-EEEEecCCCCC
Q 015198 39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQ 110 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~ 110 (411)
...+|.+.|++++|+| ++++|++|+ |+.|+||++.+... .....+.+|...+..+.|+|+. .++++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-- 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-- 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence 4678999999999999 889999999 99999999975421 1123355788889999999975 688888887
Q ss_pred CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
+.|+|||+.+++.+..+. |...|.+++|+|++.+++ .|+.|++||+++++.+..+..|..... ....+.+++
T Consensus 148 ---gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~~~ 223 (493)
T PTZ00421 148 ---MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAKRK 223 (493)
T ss_pred ---CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcCCC
Confidence 999999999999888887 889999999999998887 799999999999999888887765432 223344444
Q ss_pred eEEEEec---CCCCeEEEEEcCC--cceEEEecc-ccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCC
Q 015198 187 SVLACPG---LQRGQVRIEHFGL--NMIKLINAH-DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 187 ~~l~~~g---~~dg~i~i~~~~~--~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~ 259 (411)
..++++| +.|+.|++|+.+. .++.....+ ...+....|++++++|++++ .|+. |++||+.+++.+......
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~- 301 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS- 301 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence 4565555 3589999999764 233333333 34556677899999998887 4999 999999999887665432
Q ss_pred CCcceEEEEeCCC
Q 015198 260 DRAEIYSIALSPN 272 (411)
Q Consensus 260 ~~~~v~~l~~spd 272 (411)
...++..++|.|.
T Consensus 302 s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 SVEPHKGLCMMPK 314 (493)
T ss_pred CCCCCcceEeccc
Confidence 4457788888884
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=179.53 Aligned_cols=240 Identities=16% Similarity=0.219 Sum_probs=191.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE--EEEecCCCCCCCCCe
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTK 115 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~d~~ 115 (411)
....|.+.|++++.+ +.++|+|+ |.+|+|||+....+.-.. + .|...+.++.|.++.. .|++|++| |.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l-~HagsitaL~F~~~~S~shLlS~sdD-----G~ 108 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-L-SHAGSITALKFYPPLSKSHLLSGSDD-----GH 108 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-e-ccccceEEEEecCCcchhheeeecCC-----Cc
Confidence 467899999999985 78999999 999999999875554433 2 6778888888887664 78888888 99
Q ss_pred EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
|.+|+....+++..++ |.+.|+.++++|.+++.. .|+.++.||+-+|+.-........+ .. +.|+++|.+++.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVV 185 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEE
Confidence 9999999999999998 899999999999999887 7999999999888776666554432 23 455566676666
Q ss_pred ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe--
Q 015198 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-- 269 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-- 269 (411)
.+ ...|-+|......+.........+.++.|. ++..|++|..|+. |.+||..+..++..+.+ |+..|.++.+
T Consensus 186 ~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SG--RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYT 259 (362)
T ss_pred Ee--ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEe
Confidence 44 346777766654443333334567777775 5568899999999 99999999999999988 8999999884
Q ss_pred CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.|++.+|++++.||.|+|||++...+.
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccC
Confidence 367889999999999999999987544
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=181.22 Aligned_cols=247 Identities=14% Similarity=0.207 Sum_probs=194.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC----------------cceEEeecCCCCEEEEEEeccCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------KETFRRDLKSGGFRIVEMLFRCNIL 100 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (411)
.-...|..++.+.+|++||.++|+|+ |-.|+|.|++.. .....+.+-.|...+..+.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44678999999999999999999999 999999998710 1112233446777888999999999
Q ss_pred EEEecCCCCCCCCCeEEEEECCCCcE---EEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec-cCC
Q 015198 101 ALVGAGDNSQYPPTKVIIWDDHQSRC---IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LAN 173 (411)
Q Consensus 101 ~l~s~~~d~~~~d~~i~vwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~ 173 (411)
+|++++.| ++|+++|+..-.. .+.++...+|.++.|+|.|.+++ ....+++||+++.++...-.. ...
T Consensus 186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999998 9999999766433 33444678999999999999888 567899999999887654421 122
Q ss_pred CcceEEEccCCCceEEEEecCCCCeEEEEE-cCCcceEEEe-cc-ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN-AH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~-~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (411)
...+.++.+++.+.+. ++|+.||.|+||+ ...+++..+. .| ...|.+..|..+|+++++.+.|.. +++|.+.+++
T Consensus 261 t~ai~~V~Ys~t~~lY-vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R 338 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLY-VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGR 338 (430)
T ss_pred ccceeEEEecCCccEE-EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCc
Confidence 2355666666666555 4688999999987 5667777773 55 457899999999999999999999 9999999988
Q ss_pred eEEEEeCC-----------------------------------------------CCCcceEEEEeCCCCCEEEEEeCCC
Q 015198 251 RLQEVRRG-----------------------------------------------VDRAEIYSIALSPNVQWLAVASDKG 283 (411)
Q Consensus 251 ~~~~~~~~-----------------------------------------------~~~~~v~~l~~spdg~~l~s~s~dg 283 (411)
++.++.+. .|.+.+..+.-||.+.-+++++.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 77665431 2566778888889999999999999
Q ss_pred cEEEEEcc
Q 015198 284 TVHIFSLR 291 (411)
Q Consensus 284 ~I~vwd~~ 291 (411)
.+++|--+
T Consensus 419 raRFWyrr 426 (430)
T KOG0640|consen 419 RARFWYRR 426 (430)
T ss_pred eeeeeeec
Confidence 99999644
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-23 Score=175.89 Aligned_cols=249 Identities=12% Similarity=0.119 Sum_probs=190.4
Q ss_pred cccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
......++.|.+|+|||. ..+++.|+ |++||+|+++.......+....+...+.++.|+.++..+++++.| +.
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~ 95 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQ 95 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----Cc
Confidence 334556788999999995 55565777 999999999874443334445788899999999999998888887 99
Q ss_pred EEEEECCCCcEEEEEeecCceeEEEEcCCeE--EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI--VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
+++||+.+++....-.|..+|..+.|-+... .++ .|.+|+.||++..+++.++..+. .+.++.. ...+++
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv--~~pm~v 170 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADV--LYPMAV 170 (347)
T ss_pred eEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhc--cCceeE
Confidence 9999999998777777999999999987665 444 79999999999999988887655 2333333 223443
Q ss_pred EecCCCCeEEEEEcCCcceE--EE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeCCCC-----
Q 015198 191 CPGLQRGQVRIEHFGLNMIK--LI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVD----- 260 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~~~--~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~----- 260 (411)
+ +..+..|.++++...+.. .+ ..-.-.++||+..+|....+.|+-+|. +-|..+..+ +.-.+|+.|..
T Consensus 171 V-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 171 V-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred E-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCC
Confidence 3 556888888777543221 11 123456889999999888899999999 999998876 44556666321
Q ss_pred --CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198 261 --RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED 298 (411)
Q Consensus 261 --~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 298 (411)
--.|++|+|+|.-..|++++.||++.+||-+...+...
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 12578899999999999999999999999988877653
No 77
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=201.59 Aligned_cols=235 Identities=15% Similarity=0.201 Sum_probs=204.1
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
+.+.+..|-|.++++++|. .|.+.+||+.....+-.. +.|...+..+...|++..+++++.| .+|++||..-
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti--~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l 485 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI--RAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKL 485 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh--hccccceeeeeecCCCCceEEecCC-----cEEEEEeEEE
Confidence 3788999999999999999 999999999875544443 3788889999999999999999988 9999999421
Q ss_pred -----CcE--------EEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 124 -----SRC--------IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 124 -----~~~--------~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
|.. ..++.....|.|+.++||+++++ .|++|++|-+.+.+..-.+.+|.-|+.++.++++. .
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS--k 563 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--K 563 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc--C
Confidence 211 13344678999999999999999 79999999999999999999999877666666654 4
Q ss_pred EEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198 188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (411)
+++ +|+.|..|++|-.+ +.+-+.+-+|...|.++.|-|+..++++++.|+. |+-||-...+.++.+.+ |...|++
T Consensus 564 liv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c 639 (888)
T KOG0306|consen 564 LIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC 639 (888)
T ss_pred eEE-eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence 554 68899999999887 4677888999999999999999999999999999 99999999999999999 8889999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
++.+|+|.++++++.|.+|++|.-..
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999998655
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=5.8e-24 Score=183.10 Aligned_cols=242 Identities=13% Similarity=0.177 Sum_probs=195.8
Q ss_pred ccccCCCCCCeEEEEEcCCCC---EEEEEe-CCcEEEEecCCCcceEEee--cCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198 37 TAFSDVDEIELISVSWNQDYG---CFAAGT-SCGFRIYNCEPFKETFRRD--LKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~---~la~g~-dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (411)
.....+|.++|.+++|.-... .|++++ |.++++|.++......... ..+|...+.++...+++..+++++.|
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D-- 214 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD-- 214 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc--
Confidence 345789999999888864433 588888 9999999998755443322 23788889999999999999999998
Q ss_pred CCCCeEEEEECCC-------------------------CcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCc
Q 015198 111 YPPTKVIIWDDHQ-------------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL 162 (411)
Q Consensus 111 ~~d~~i~vwd~~~-------------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~ 162 (411)
..|.+|+..+ +.++..+. |..+|.++.|++.+.... .|.+|+.||+.++
T Consensus 215 ---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 215 ---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence 9999999321 22344455 889999999999655544 8999999999999
Q ss_pred eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccccceeEEEecCCCC-EEEEEcCC
Q 015198 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGL-LLATASTR 237 (411)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~d 237 (411)
+....+.+.. ...+++..+...+|++ |+.|..+++|+.+.. ..+.+.+|...|.++.|+|... .|++++.|
T Consensus 292 ~~~~~~~~~k---sl~~i~~~~~~~Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D 367 (423)
T KOG0313|consen 292 GLKSTLTTNK---SLNCISYSPLSKLLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD 367 (423)
T ss_pred cceeeeecCc---ceeEeecccccceeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence 9988886654 4566666666667765 789999999887642 4567889999999999999765 68899999
Q ss_pred CeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 238 GTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 238 g~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+. +++||+++.+ +++.+.+ |...|.++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus 368 ~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 NT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred Ce-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99 9999999987 8999988 88899999997 46789999999999998754
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-23 Score=192.17 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=224.3
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~ 127 (411)
+=+.|+ ....||+|....|.+|+..+........+ +...+.++.|++++..|+.|..+ |.|.|||..+.+.+
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT 252 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence 346677 45689999999999999988664444443 37889999999999999999988 99999999998888
Q ss_pred EEEe--ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEE-EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198 128 GEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (411)
Q Consensus 128 ~~~~--~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 203 (411)
..+. |...|-+++|+....... .++.|..+|++..+.... +..|.. .+|.+.+++++.++|. |+.|+.+.||+
T Consensus 253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lAS-GgnDN~~~Iwd 329 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLAS-GGNDNVVFIWD 329 (484)
T ss_pred ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeecc-CCCccceEecc
Confidence 8876 689999999995444444 899999999988766555 566665 7888999999999986 77999999988
Q ss_pred c-CCcceEEEeccccceeEEEecCC-CCEEEEE--cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE-
Q 015198 204 F-GLNMIKLINAHDSHIACFTLTLD-GLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV- 278 (411)
Q Consensus 204 ~-~~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s- 278 (411)
. ...+...+..|.+.|.+++|+|- ..+||+| +.|+. |++||..+|+.+..+.. ...|.+|.|++..+-|++
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLST 405 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEe
Confidence 7 45778889999999999999994 4588886 46899 99999999999988874 458999999998876665
Q ss_pred -EeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 015198 279 -ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI 357 (411)
Q Consensus 279 -~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (411)
|..++.|.||+..+.+.......|
T Consensus 406 hG~s~n~i~lw~~ps~~~~~~l~gH------------------------------------------------------- 430 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKLVAELLGH------------------------------------------------------- 430 (484)
T ss_pred cCCCCCcEEEEeccccceeeeecCC-------------------------------------------------------
Confidence 445678999999997766544444
Q ss_pred CCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcE
Q 015198 358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEM 395 (411)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~ 395 (411)
...+...+++|+ ..|++++.|..+.+|++-.....++
T Consensus 431 -~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 431 -TSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred -cceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence 234566889999 8899999999999999987533333
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=200.58 Aligned_cols=244 Identities=15% Similarity=0.191 Sum_probs=193.3
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC--------------------------------C--------
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--------------------------------S-------- 124 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~--------------------------------~-------- 124 (411)
.|...|.++.|+++|.+||+++.| +.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 788899999999999999999999 9999998644 0
Q ss_pred --------------------cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198 125 --------------------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (411)
Q Consensus 125 --------------------~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (411)
++++.+. |.+.|.++.|+.++.++. .|.+|++|++...+++..|. |...+++++|.
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0112222 567899999999998888 89999999999999999886 66667777777
Q ss_pred cCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-
Q 015198 182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD- 260 (411)
Q Consensus 182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~- 260 (411)
|-.|. +++ +|+-||.|+||......+.....-..-|++++|.|||++.++|+.+|. +++|+....+....+....+
T Consensus 419 PvDDr-yFi-SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 419 PVDDR-YFI-SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ccCCC-cEe-ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeecc
Confidence 77665 333 699999999999999888888777899999999999999999999999 99999988776655433212
Q ss_pred -----CcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCc
Q 015198 261 -----RAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS 334 (411)
Q Consensus 261 -----~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (411)
...|+.++|.|.. ..|++.++|..|+|||.++.+......+..
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~------------------------------- 544 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR------------------------------- 544 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------
Confidence 2279999999743 357778899999999998776543222210
Q ss_pred ccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCC
Q 015198 335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH 391 (411)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~ 391 (411)
.........|+.+ ..||+++.|..||+|.++...
T Consensus 545 -----------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 545 -----------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -----------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 0123445678888 789999999999999997643
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=172.22 Aligned_cols=238 Identities=19% Similarity=0.249 Sum_probs=204.4
Q ss_pred ccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
...+|.+.|-.++|+|. ..+|++++ |..|++||....+....... ...-+-+.|+|++.+++.++.| ..|
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kd-----D~i 130 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET---KGENINITWSPDGEYIAVGNKD-----DRI 130 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEecCc-----ccE
Confidence 45789999999999986 56788888 99999999998777666643 3334456789999998888887 899
Q ss_pred EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
...|.++.+.+...+....+..+.|+.++.+++ ..|.|.|......+++..++.|.. .++|+.++|+|+++|+ |
T Consensus 131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~-G 207 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFAT-G 207 (313)
T ss_pred EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEee-c
Confidence 999999999999998888899999987666666 458999999999999999998874 8999999999999986 8
Q ss_pred CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198 194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272 (411)
Q Consensus 194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd 272 (411)
+.|..+.+|+.+. -+++.+..+.-+|..+.|+.||++||+|++|.. |-|=++++|..+.++. +.++...++|+|.
T Consensus 208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPK 283 (313)
T ss_pred cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCC
Confidence 8999999998764 678888999999999999999999999999999 9999999999999998 6778999999999
Q ss_pred CCEEEEEeCC---------CcEEEEEcc
Q 015198 273 VQWLAVASDK---------GTVHIFSLR 291 (411)
Q Consensus 273 g~~l~s~s~d---------g~I~vwd~~ 291 (411)
..+||-++.| |.+++|-+.
T Consensus 284 ~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 284 RPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CceeeEEecCCCCccccccceeEEecCC
Confidence 9999987765 466766543
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-23 Score=173.73 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=204.4
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeE-EEEecCCCCC
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQ 110 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~ 110 (411)
...+.+|.+.|++++|+.||++||+++ |+.|+||+++.+... ++..+... ....+.|.||-. ++++....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~g-- 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKRG-- 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEccC--
Confidence 356889999999999999999999999 999999999865432 22222222 344566777643 33333333
Q ss_pred CCCCeEEEEECCC---CcEEE--------EEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC
Q 015198 111 YPPTKVIIWDDHQ---SRCIG--------EFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL 174 (411)
Q Consensus 111 ~~d~~i~vwd~~~---~~~~~--------~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~ 174 (411)
.++++|.+.. |..-. .+. |...+..+-....+.++. .|..|.+|+++ |+.+..+......
T Consensus 155 ---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 155 ---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred ---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 7899997533 21111 111 556677777778888887 79999999998 8999888776654
Q ss_pred cceEEEccCCCceEEEEecCCCCeEEEEEcC----C-----cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----L-----NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
....+++ |+|++++++| -.-.|++|..- + ..+..+++|...|..++|+++.+.+++.+.||. ++|||
T Consensus 231 n~~aavS--P~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwd 306 (420)
T KOG2096|consen 231 NYDAAVS--PDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWD 306 (420)
T ss_pred ccceeeC--CCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEee
Confidence 4555555 4668888876 45678887642 2 346678999999999999999999999999999 99999
Q ss_pred CCC-------CceEEEEeCCC--CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198 246 TVD-------GTRLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (411)
Q Consensus 246 ~~~-------~~~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (411)
++- .+.+++..... ..+....+.++|+|+.||.+.. ..+++|..++|+...+.+
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e---------------- 369 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELE---------------- 369 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHH----------------
Confidence 752 12222321111 1223458999999999887654 459999999987654222
Q ss_pred CCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
++.++....++|+++++.++.|.|-.++++--.+
T Consensus 370 ---------------------------------------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 370 ---------------------------------------DIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred ---------------------------------------HhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 2334577889999999999999999998886555
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-23 Score=172.51 Aligned_cols=236 Identities=18% Similarity=0.174 Sum_probs=178.4
Q ss_pred EEEEEcCC-CCEEEEE--------eCCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeE
Q 015198 48 ISVSWNQD-YGCFAAG--------TSCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 48 ~~l~~s~~-g~~la~g--------~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i 116 (411)
+++.|+|- ..+||++ +.|.+.|.++...+. .....+ .-......++|+++ ...++++..| |.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GD-----GSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGD-----GSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecC-----ceE
Confidence 67889984 3344432 257788888853222 222223 44556777888864 2344444545 999
Q ss_pred EEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 117 IIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 117 ~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
++||+.. ..++..++ |..+|.++.|++..+..+ .|++|++|+...++.+.++.+|...+....++|...+ +++
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfa 164 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFA 164 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEE
Confidence 9999533 45777777 999999999998654444 7999999999999999999999887777777776543 333
Q ss_pred EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEE
Q 015198 191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l 267 (411)
+.+.|+.+++|+.+. .....+..|...|.++.|+. +...|++|+.|+. |++||+++-+ ++.++.+ |.-.|..+
T Consensus 165 -s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv 240 (311)
T KOG0277|consen 165 -SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV 240 (311)
T ss_pred -EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence 467899999998764 33344899999999999986 5568999999999 9999998764 5677766 88899999
Q ss_pred EeCCCC-CEEEEEeCCCcEEEEEccccc
Q 015198 268 ALSPNV-QWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 268 ~~spdg-~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.|||.. .+||+++.|-+++|||...+.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccch
Confidence 999964 578999999999999998665
No 84
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=5.3e-23 Score=195.55 Aligned_cols=246 Identities=13% Similarity=0.107 Sum_probs=180.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE-----------eecCCCCEEEEEEeccC-CeEEEEecCC
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRC-NILALVGAGD 107 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~l~s~~~ 107 (411)
+.|-..|.....++++..+++++ +.....|+...+..++. ..+.+|...+.++.|+| ++..+++++.
T Consensus 17 ~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 17 DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC
Confidence 34556677777777766566555 66666676543221110 11346788899999999 7788999998
Q ss_pred CCCCCCCeEEEEECCCCc-------EEEEEe-ecCceeEEEEcCCe-EEEE---EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198 108 NSQYPPTKVIIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLR 175 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~ 175 (411)
| ++|++||+.++. .+..+. |...|.+++|+|++ .+++ .|+.|++||+++++.+..+..|...+
T Consensus 97 D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 97 D-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred C-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 8 999999987652 455565 88999999999975 4454 69999999999999988888887754
Q ss_pred ceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccc-eeEEEecCCCCEEEEEc----CCCeEEEEEECCCC
Q 015198 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH-IACFTLTLDGLLLATAS----TRGTLIRIFNTVDG 249 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~-i~~l~~sp~g~~l~s~s----~dg~~I~vwd~~~~ 249 (411)
.++.+++++.+|++ ++.|+.|++|+.. ++.+..+.+|.+. +..+.|.+++..|++++ .|+. |++||+++.
T Consensus 172 --~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~ 247 (493)
T PTZ00421 172 --TSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKM 247 (493)
T ss_pred --EEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCC
Confidence 45555556677765 6789999999865 4566778888765 34677888887777654 4788 999999876
Q ss_pred ce-EEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccccC
Q 015198 250 TR-LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVVG 296 (411)
Q Consensus 250 ~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~ 296 (411)
.. +...... ....+....|++++++|++++ .|+.|++||+.+++..
T Consensus 248 ~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 248 ASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 53 3333321 334566778999999999887 5999999999987643
No 85
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=7.7e-23 Score=195.42 Aligned_cols=230 Identities=10% Similarity=0.125 Sum_probs=175.1
Q ss_pred ccccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcce------EEeecCCCCEEEEEEeccCCeE-EEEecCC
Q 015198 37 TAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET------FRRDLKSGGFRIVEMLFRCNIL-ALVGAGD 107 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~ 107 (411)
.....+|.+.|.+++|+|+ +.+|++|+ |+.|+||++.+.... ....+.+|...+..+.|+|++. ++++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 3457899999999999997 78999999 999999999753221 1122446778899999999775 5578887
Q ss_pred CCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEc---
Q 015198 108 NSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS--- 181 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--- 181 (411)
| +.|++||+.+++.+..+.+...|.+++|+++|.+++ .|+.|++||+++++.+..+..|...+....+.
T Consensus 147 D-----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 147 D-----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred C-----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 7 999999999999888888888999999999999888 58999999999999999998887654333322
Q ss_pred cCCCceEEEEecCCC---CeEEEEEcCC--cceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198 182 HHSSTSVLACPGLQR---GQVRIEHFGL--NMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (411)
Q Consensus 182 ~~~~~~~l~~~g~~d---g~i~i~~~~~--~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (411)
+++++.+|+++|..+ +.|+||+.+. .++..+.. +.+.+......++|.++++|+.|+. |++|++..+. +..
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~ 299 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRK 299 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEe
Confidence 345667777766543 4799999773 44544432 2333333434566889999999999 9999998764 444
Q ss_pred EeCCCCCcceEEEEeCCCC
Q 015198 255 VRRGVDRAEIYSIALSPNV 273 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg 273 (411)
+....+..++.+++|.|..
T Consensus 300 l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 VNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ecccccCCCccceEEcccc
Confidence 5544466788999999964
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=196.98 Aligned_cols=242 Identities=17% Similarity=0.233 Sum_probs=200.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.+.+|.+.|++++|..-+.+|++|+ |.++++||+.+++..... .+|...+.++...+ ..+++|+.| .+|+
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l--~gh~stv~~~~~~~--~~~~sgs~D-----~tVk 314 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL--QGHTSSVRCLTIDP--FLLVSGSRD-----NTVK 314 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe--cCCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence 3789999999999998888999999 999999999886655444 36777777665543 455668887 9999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
+|++.++.++..+. |..+|.++.++.+-.+.. .|+.|++||+.++++++.+.+|...+. ++..++. ..+ ++|+.
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~~-~~~-~Sgs~ 390 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY--SLIVDSE-NRL-LSGSL 390 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEE--EEEecCc-ceE-Eeeee
Confidence 99999999999999 999999999994333333 899999999999999999999988544 4455443 334 46889
Q ss_pred CCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198 196 RGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (411)
Q Consensus 196 dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (411)
|+.|++|+.... ++..+.+|..-+..+.+ .+++|++++.|+. |++||..++++++++... |...|..+++. .
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~ 464 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--K 464 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--c
Confidence 999999998776 88899999999876654 6789999999999 999999999999999875 55788888876 4
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCC
Q 015198 274 QWLAVASDKGTVHIFSLRVRVVGEDS 299 (411)
Q Consensus 274 ~~l~s~s~dg~I~vwd~~~~~~~~~~ 299 (411)
..+++++.||.+++||+++++..++.
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ceEEEEecCCeeEEEecccCchhhhh
Confidence 67889999999999999999987644
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.9e-23 Score=181.54 Aligned_cols=248 Identities=17% Similarity=0.217 Sum_probs=207.0
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce---EEe-----------ec--CCCCEEEEEEeccCCe
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRR-----------DL--KSGGFRIVEMLFRCNI 99 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~---~~~-----------~~--~~~~~~~~~~~~~~~~ 99 (411)
......|.-+|.+++++|++++.++++ +++|.-|++.++... ... .. ..|...+++++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 345678999999999999999999999 999999998765432 111 01 1566788999999999
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCC--eEEEE-EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQIETLANLR 175 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 175 (411)
.++++++.| ..|.||+..+.+.++.+. |.+.|.+++|-.. ..+.+ .|..|++|+++....+.++.+|+.
T Consensus 215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-- 287 (479)
T KOG0299|consen 215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-- 287 (479)
T ss_pred cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc--
Confidence 999999998 999999999999999988 9999999999754 44444 899999999998888888888887
Q ss_pred ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
.+..+......+. +++|..|+++++|.........+.+|.+.+-|++|-.+ ..+++|+.+|. |.+|++.+.+++++.
T Consensus 288 ~v~~IdaL~reR~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 288 GVLGIDALSRERC-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS 364 (479)
T ss_pred ceeeechhcccce-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence 5556665555444 45688999999999988777888999999999999755 46899999999 999999999888876
Q ss_pred eCCCC----------CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
...++ +..|++++..|...++|+|+.+|.|++|.+..+-
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 54321 1278999999999999999999999999999885
No 88
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=5.5e-25 Score=185.78 Aligned_cols=240 Identities=13% Similarity=0.191 Sum_probs=206.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
..-++++|.|+.|+.|...||+|+ ||.|++|.+.++..+.+.. ..|...+.++.|+.++..+.+++.| .++++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRi 332 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFD-----QTVRI 332 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcchhhccccc-----ceEEE
Confidence 345789999999999999999999 9999999999966544332 3788899999999999999999998 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc-eEEEEec
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLACPG 193 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g 193 (411)
.-+++|+++++++ |..-|+...|.+||..++ .||+|++|+..+.+++.+++.......+..+..-|.+ ..+++ +
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-C 411 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV-C 411 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE-E
Confidence 9999999999999 999999999999999888 7999999999999999999776555554444443333 23333 4
Q ss_pred CCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 194 LQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 194 ~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
...++|+|-+..++.++.+... .+...+.+++|.|.++.+.++|+. ++.|.+.+|++..++.. |+..|..++-+
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HH 488 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHH 488 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccC
Confidence 5788999999999999888532 456667789999999999999999 99999999999999988 78889999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 015198 271 PNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd 289 (411)
|..+.||+-++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999995
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=7.1e-24 Score=184.36 Aligned_cols=242 Identities=14% Similarity=0.198 Sum_probs=194.2
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
+...+.+..+.|+++.|.++++.+++++ |+.+++|+++..+.. .+|.+|...+.++.|......+++++.| .
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~D-----R 283 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLSGHTDKVTAAKFKLSHSRVVSGSAD-----R 283 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhcccccceeeehhhccccceeecccc-----c
Confidence 3345678888999999999999988888 999999999975543 3355899999999988877779999988 9
Q ss_pred eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
+|++||+....|.+++-....+.+|..++...+-. .|++|++||+++..+......+. .+..+.+++ ++..+.++
T Consensus 284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~--~g~~lLss- 359 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM--DGLELLSS- 359 (459)
T ss_pred hhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc--CCeEEeee-
Confidence 99999999999999888888888888773222222 79999999999999998888766 344455554 45556554
Q ss_pred CCCCeEEEEEcCCc-ceEEEecc----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198 194 LQRGQVRIEHFGLN-MIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 194 ~~dg~i~i~~~~~~-~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (411)
+.|.++.+.+.... ....+.+. ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEE
Confidence 68889999555544 34444321 334788999999999999999999 9999999999998888754444799999
Q ss_pred eCCCCCEEEEEeCCCcEEEEE
Q 015198 269 LSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd 289 (411)
|+|.|..|++++.++.+.+|.
T Consensus 439 W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EcCCCchhhcccCCcceEecC
Confidence 999999999999999999993
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-21 Score=155.63 Aligned_cols=284 Identities=16% Similarity=0.211 Sum_probs=216.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC-------------cceEEeecCCCCEEEEEEeccCCeEEEEecC
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF-------------KETFRRDLKSGGFRIVEMLFRCNILALVGAG 106 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 106 (411)
.+....|.+++|+|.|.+.|+|+ ..+++|-..... ..++-+.-+.|...+.+.+|++.+.++++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34567899999999999999999 888887644210 0112222346778899999999999999999
Q ss_pred CCCCCCCCeEEEEECCCCcEE-----EEEe-ecCceeEEEEcCC----eEEEE----EcCeEEEEEcCCceeeEEEeccC
Q 015198 107 DNSQYPPTKVIIWDDHQSRCI-----GEFA-FRSDVRSVKLSRD----RIVVV----LEHKIYVYSFVDLKLLHQIETLA 172 (411)
Q Consensus 107 ~d~~~~d~~i~vwd~~~~~~~-----~~~~-~~~~i~~~~~~~~----~~~~~----~dg~i~iwd~~~~~~~~~~~~~~ 172 (411)
.| .+|++.-++...+- .++. |.+.|..++|-.+ +.+++ .|..|++-|-.+|+..+.+.+|.
T Consensus 109 nd-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 109 ND-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred CC-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 98 99999876543321 2344 8999999999643 45555 57889999999999999999988
Q ss_pred CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEec--c-----ccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA--H-----DSHIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~--~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
..+. .-++|++ .++++|+.|.+|++|+.+-. ++..+.. | ...|.+++..|.|++|++|-.|.. ..+|
T Consensus 184 ghil-alyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly 258 (350)
T KOG0641|consen 184 GHIL-ALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY 258 (350)
T ss_pred ccEE-EEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence 7332 2345553 35557999999999998753 3444321 2 357999999999999999999999 9999
Q ss_pred ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccC
Q 015198 245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (411)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (411)
|++.++.++.+.. |...|.++.|+|...+|++++.|..|++-|++..-..
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------------------- 308 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------------------- 308 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh----------------------------
Confidence 9999999999988 8899999999999999999999999999998754211
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
.+|.+ -+.-+.+-...|.|.++ -.++..+.|-.+-.|.+.
T Consensus 309 ----------------el~~~--------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 ----------------ELPIM--------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----------------cCceE--------EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 12221 11112234556889987 678888889999998764
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.6e-23 Score=183.03 Aligned_cols=241 Identities=19% Similarity=0.236 Sum_probs=193.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~ 117 (411)
...-...|+++.|-.||++||+|. .|.|+|||+.+ +.+++ .+..|...+....|++. ...+++|++| +.++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR-~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k 136 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR-QLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVK 136 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH-HHhhccCceeEEEecccCCeEEEecCCC-----ceEE
Confidence 445678899999999999999999 99999999665 33333 35578888888889884 5778888887 9999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEE-EE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIV-VV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
+||+.+......+. |...|.+.+|+|.... ++ .||.|++||++.. ..+.++. |..++..+.+-++ +..+++
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lps--gs~ias 213 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPS--GSLIAS 213 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCC--CCEEEE
Confidence 99999888654565 9999999999997553 33 7999999999876 4555554 5666666655554 456776
Q ss_pred ecCCCCeEEEEEcC-Cc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 192 PGLQRGQVRIEHFG-LN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 192 ~g~~dg~i~i~~~~-~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
+| ...|++|+.. +. .+..+..|...|+|+++..++..|++|+-|+. |++||+.+.+.+..+. ..++|.+++.
T Consensus 214 Ag--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiav 287 (487)
T KOG0310|consen 214 AG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAV 287 (487)
T ss_pred cC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEe
Confidence 55 4689999987 43 34444559999999999999999999999999 9999998888888887 6789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+|+++.++.|..+|.+.+=+...+++.
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cCCCceEEEecccceeeeehhhcccCC
Confidence 999999999999998777655555443
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=193.77 Aligned_cols=245 Identities=15% Similarity=0.272 Sum_probs=197.1
Q ss_pred CCCCCeE---EEEEc-CCCCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 42 VDEIELI---SVSWN-QDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 42 ~h~~~V~---~l~~s-~~g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
.|...|. .+..+ |.+++|.+|+ ||.|++|+....... +...++.|..++..+....++..+++++.|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD---- 94 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD---- 94 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----
Confidence 3444455 45555 4577899999 999999998753332 334456788888888888899899999988
Q ss_pred CCeEEEEECCCC--cEEEEEe-ecCceeEEEE-cCCeEEEE---EcCeEEEEEcCCc--eeeEEEec------c-CCCcc
Q 015198 113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKL-SRDRIVVV---LEHKIYVYSFVDL--KLLHQIET------L-ANLRG 176 (411)
Q Consensus 113 d~~i~vwd~~~~--~~~~~~~-~~~~i~~~~~-~~~~~~~~---~dg~i~iwd~~~~--~~~~~~~~------~-~~~~~ 176 (411)
-+|++|+...+ -++.++. |...|.|+++ .++..+++ .|+.|.+||++++ +.+..+.. . .....
T Consensus 95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99999998777 5667776 9999999999 77777777 7999999999877 33333211 1 22235
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
+.+++.++.+..+ ++|+.++.+++|+.. .+.+..+.+|...|.++..++||..+++++.||+ |++||+...+++.++
T Consensus 174 iYSLA~N~t~t~i-vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 174 IYSLAMNQTGTII-VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATY 251 (735)
T ss_pred eeeeecCCcceEE-EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeE
Confidence 5667777666454 568899999998865 4667788999999999999999999999999999 999999999999999
Q ss_pred eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.. |...|+++..+|+=..+++|+.||.|+.=|+++..+
T Consensus 252 ~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 252 IV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred Ee--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 88 777899999999999999999999999999998643
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-22 Score=169.97 Aligned_cols=285 Identities=13% Similarity=0.187 Sum_probs=211.4
Q ss_pred ccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcc------eE-------EeecCCCCEEEEEEeccC-CeEEE
Q 015198 39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKE------TF-------RRDLKSGGFRIVEMLFRC-NILAL 102 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~-~~~~l 102 (411)
....|.+.|+++.+.+. |+++++|+ ||.|.+||++.... +. +..-..|.-.|..+.|-| |.-.+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 35679999999999885 89999999 99999999975321 00 011134566677777776 55567
Q ss_pred EecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCC---eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198 103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (411)
Q Consensus 103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 176 (411)
.+++.| .+++|||..+-+....|+.++.|++-+++|- .-+++ .+-.|++.|+.+|..-+.+.+|.. .
T Consensus 118 tssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~--~ 190 (397)
T KOG4283|consen 118 TSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD--G 190 (397)
T ss_pred eccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--c
Confidence 777877 9999999999999999999999999999884 33444 688999999999999999999988 6
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceE--------------EEeccccceeEEEecCCCCEEEEEcCCCeE
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK--------------LINAHDSHIACFTLTLDGLLLATASTRGTL 240 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~--------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (411)
++++.|+|...+++++|+.||.|++|+.+.. +.. .-..|.+.+..++|+.+|.++++.+.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r- 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR- 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence 7777788888899999999999999997641 222 22467788999999999999999999999
Q ss_pred EEEEECCCCceE-EEEeCCCCCc---ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198 241 IRIFNTVDGTRL-QEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (411)
Q Consensus 241 I~vwd~~~~~~~-~~~~~~~~~~---~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (411)
+++|+..+|+.. ..+-...|.. .-..+. +.+...++---.++.+.++++-.++...-
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~------------------ 330 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR------------------ 330 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEe------------------
Confidence 999999887532 1111110111 111122 33444455455567788888877764432
Q ss_pred CCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
++.+--...++++.++ ++..++..||.++.|...
T Consensus 331 --------------------------------------l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 331 --------------------------------------LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred --------------------------------------eecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 2222224567778888 999999999999999764
No 94
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.6e-21 Score=186.44 Aligned_cols=175 Identities=8% Similarity=0.090 Sum_probs=136.6
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCce--------eeEEEeccCCCcceEEE
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLK--------LLHQIETLANLRGLCCL 180 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~ 180 (411)
+.|++|+......+..+. |...|.+++|+|+ +.+++ .|+.|++||+.++. .+..+.+|...+.. +
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s--V 131 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI--I 131 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE--E
Confidence 899999988877777777 8999999999996 55665 79999999997542 23456677765444 4
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (411)
.++|++..++++++.|+.|+||+..... +..+. |...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++.+
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g-- 207 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI-- 207 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec--
Confidence 4555555555557789999999987544 34443 6678999999999999999999999 99999999999988887
Q ss_pred CCcce-----EEEEeCCCCCEEEEEeCCC----cEEEEEccccc
Q 015198 260 DRAEI-----YSIALSPNVQWLAVASDKG----TVHIFSLRVRV 294 (411)
Q Consensus 260 ~~~~v-----~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~ 294 (411)
|.+.+ +...|++++.+|++++.|+ +|+|||+++..
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 55443 3334668999999988774 79999998643
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=170.91 Aligned_cols=287 Identities=12% Similarity=0.136 Sum_probs=226.2
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
+.....||.+.|+.++-......+.+++ |.+.+||.++++..+.... +|...+.++.|++.+.++++++.| +
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD-----~ 212 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGD-----E 212 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCC-----c
Confidence 4456789999999999988888888999 9999999999977666554 888899999999999999999988 8
Q ss_pred eEEEEEC------CC------------------------------C----cEEEEEe-ecCceeEEEEcCCeEEEE---E
Q 015198 115 KVIIWDD------HQ------------------------------S----RCIGEFA-FRSDVRSVKLSRDRIVVV---L 150 (411)
Q Consensus 115 ~i~vwd~------~~------------------------------~----~~~~~~~-~~~~i~~~~~~~~~~~~~---~ 150 (411)
+..||.. .. + .++..+. |...|.+..|-..+..++ .
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 8888861 11 0 0122333 667777888877777666 7
Q ss_pred cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC
Q 015198 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG 228 (411)
Q Consensus 151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g 228 (411)
|.+..+||+++++.++.+.+|.....-++-.+. .+ |+.+.+.|.+.++|+... ..+..|++|...|+++.|..+.
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--Qr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCc--ce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 999999999999999999999886665555544 34 445678999999999875 4577899999999999998766
Q ss_pred CEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCC
Q 015198 229 LLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPS 307 (411)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~ 307 (411)
.+++|+.|.+ |+|||+++.. .+.++. ...+++.++.+..+..|+.--.+..|++||++.....+
T Consensus 370 -~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR---------- 434 (481)
T KOG0300|consen 370 -RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR---------- 434 (481)
T ss_pred -ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc----------
Confidence 4889999999 9999998764 566776 45689999999888888888888899999998765332
Q ss_pred cccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC---CEEEEEEeCCcEEE
Q 015198 308 QSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYR 384 (411)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~ 384 (411)
+|+. .-+-+...+++|+|..+ ..|+++|-|-.+.-
T Consensus 435 ----------------------------------lPrt--------sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 435 ----------------------------------LPRT--------SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred ----------------------------------CCcc--------cccccceeeeeeeccccCcccccccccccceeee
Confidence 1111 11122346788999766 88999999999999
Q ss_pred EEEec
Q 015198 385 CSFDP 389 (411)
Q Consensus 385 ~~~~~ 389 (411)
|++..
T Consensus 473 W~in~ 477 (481)
T KOG0300|consen 473 WKINT 477 (481)
T ss_pred eEecc
Confidence 98865
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=3.2e-23 Score=170.78 Aligned_cols=250 Identities=10% Similarity=0.065 Sum_probs=191.4
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
......+|.+.|+|+..+-+.++|++|+ |.+++|||+++++++.... .+..+..+.|+.++.+++...++..-..+
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---TNSPVKRVDFSFGGNLILASTDKQMGYTC 120 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---cCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence 4456789999999999999999999999 9999999999988877664 45667777788777766666555455568
Q ss_pred eEEEEECC-------CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEcc
Q 015198 115 KVIIWDDH-------QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 115 ~i~vwd~~-------~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (411)
.|.++|++ ..++...+. +...++.+-|.|-+..++ .||.|.+||+++|+ .+...+.|...+ ..+.+
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I--nd~q~ 198 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI--NDLQF 198 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc--ccccc
Confidence 99999987 455566666 788999999999998888 79999999999974 455556777644 45555
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCe-EE------------EEEECCCC
Q 015198 183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT-LI------------RIFNTVDG 249 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-~I------------~vwd~~~~ 249 (411)
+++..+++ +|+.|.+-++|+...-.+........+|++.+++|....++.|+.... .| ++|++-..
T Consensus 199 s~d~T~Fi-T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 199 SRDRTYFI-TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred cCCcceEE-ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 55656665 588999999977766544444456889999999998877776654322 11 12222223
Q ss_pred ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
+.+..+++ |-++|++++|+|+|+..++|++||.|++.-++..
T Consensus 278 EEigrvkG--HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 278 EEIGRVKG--HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HHhccccc--cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 45556677 8889999999999999999999999999877654
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=186.16 Aligned_cols=285 Identities=12% Similarity=0.177 Sum_probs=221.3
Q ss_pred CCCCCeEEEEEcCC-----------CCEEEEEe-CCcEEEEecCCC--cceEEeec------------------------
Q 015198 42 VDEIELISVSWNQD-----------YGCFAAGT-SCGFRIYNCEPF--KETFRRDL------------------------ 83 (411)
Q Consensus 42 ~h~~~V~~l~~s~~-----------g~~la~g~-dg~i~iw~~~~~--~~~~~~~~------------------------ 83 (411)
-|...|+.+.--|- ...+++++ |++|++|+++.. ..++++.+
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 35666666655441 23577777 999999999741 12221110
Q ss_pred ---------CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCC---eEEEE-
Q 015198 84 ---------KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD---RIVVV- 149 (411)
Q Consensus 84 ---------~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~~- 149 (411)
-.....+.+++.+|++..|++|..- |+|+||++..-+....+. |...|.|+.|+.. .++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 1345568889999999999999988 999999999888888887 9999999999853 34555
Q ss_pred --EcCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEec-----ccccee
Q 015198 150 --LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA-----HDSHIA 220 (411)
Q Consensus 150 --~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~-----~~~~i~ 220 (411)
.|.-|++||.. +..+++++..|...++.+.|+.++-+..++.+| .|..|.+.... ......+.. ....++
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc-CchhhheehhccccCceeccccccccccceEE
Confidence 78999999994 456778889999888888888877666666644 78888874333 222222322 245789
Q ss_pred EEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198 221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS 299 (411)
Q Consensus 221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 299 (411)
.++..|..+++++++.|.. |+|||+.+|+..+.|++.. |.+....+...|.|.||++...|.++.++|+.+|++.-+.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 9999999999999999999 9999999999999998743 4467888999999999999999999999999999986433
Q ss_pred CCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEe
Q 015198 300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM 378 (411)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 378 (411)
.+| ...+.-+-|.++ ..|+.++.
T Consensus 680 ~GH--------------------------------------------------------sE~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 680 TGH--------------------------------------------------------SEAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred cCc--------------------------------------------------------chheeeeeecccchhheeecC
Confidence 333 235667889998 99999999
Q ss_pred CCcEEEEEEec
Q 015198 379 DGSFYRCSFDP 389 (411)
Q Consensus 379 dg~~~~~~~~~ 389 (411)
||.++||.++.
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999985
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.4e-22 Score=175.06 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=210.1
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~ 115 (411)
+......+.|++|.|+|...+|++++ |+.++||.++.........++-....+....|.|++. .+++++.. ..
T Consensus 207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky 281 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KY 281 (514)
T ss_pred ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc-----eE
Confidence 33445567899999999999999999 9999999998644444444445566777888888887 77777766 89
Q ss_pred EEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 116 VIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
++.||+.+.+..+.-. ....+....+++++.+++ ..|.|++....+++.+..++... .+..+.++.++..
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE 358 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence 9999998887654433 234677888999999888 68999999999999998887654 3455555567777
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEeccccce--eEEEecCCCCEEEEEcCCCeEEEEEECCC------CceEEEEeCCCC
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHI--ACFTLTLDGLLLATASTRGTLIRIFNTVD------GTRLQEVRRGVD 260 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i--~~l~~sp~g~~l~s~s~dg~~I~vwd~~~------~~~~~~~~~~~~ 260 (411)
|+++| .+|.|.+|+.+...+...-...+.| ++++.+++|.+||+|+..|. |.|||.++ .+++..+.. -
T Consensus 359 l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--L 434 (514)
T KOG2055|consen 359 LLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--L 434 (514)
T ss_pred EEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--h
Confidence 77655 6889999998775443332233333 56778899999999999999 99999654 245555554 4
Q ss_pred CcceEEEEeCCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccc
Q 015198 261 RAEIYSIALSPNVQWLAVASD--KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM 338 (411)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (411)
...|++|+|++|+++||.++. +..+++-.+.+-..-.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs----------------------------------------- 473 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS----------------------------------------- 473 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec-----------------------------------------
Confidence 568999999999999987774 5568887766544221
Q ss_pred ccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
.|+.. .-+-+.+.+++|+|+ +-+++|..+|++.+|.+.
T Consensus 474 ----------NfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 ----------NFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------cCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00000 011145678999998 777777778999999874
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=8.5e-23 Score=171.66 Aligned_cols=212 Identities=14% Similarity=0.222 Sum_probs=172.4
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC------------C------cEEEEEe-ecCceeEEEEcC
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------------S------RCIGEFA-FRSDVRSVKLSR 143 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~------------~------~~~~~~~-~~~~i~~~~~~~ 143 (411)
+..|...+.+..|+++|.++++|+.| ..|+|.|++. + -.++++- |..+|+++.|+|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34678888899999999999999998 9999999762 1 1244443 889999999999
Q ss_pred CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE----EEeccc
Q 015198 144 DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK----LINAHD 216 (411)
Q Consensus 144 ~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~----~~~~~~ 216 (411)
...+++ .|++|++||+......+.++.......+.+++++|.|.+|++ |.....+++++.+..... .-..|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-gTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-GTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-ecCCCceeEEeccceeEeeecCcccccc
Confidence 999888 799999999965433333333333335677788888888876 778889999877653222 124689
Q ss_pred cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+.|+++.+++.|++.++++.||. |++||--+++++.++...+....|.+..|..+|++|++.+.|..+++|.+.++...
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred cceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 99999999999999999999999 99999999999999987766679999999999999999999999999999999877
Q ss_pred CCCCC
Q 015198 297 EDSSS 301 (411)
Q Consensus 297 ~~~~~ 301 (411)
.+..+
T Consensus 341 ~~YtG 345 (430)
T KOG0640|consen 341 KEYTG 345 (430)
T ss_pred EEEec
Confidence 54443
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.3e-22 Score=178.77 Aligned_cols=245 Identities=12% Similarity=0.148 Sum_probs=186.4
Q ss_pred ccCCCCCCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcceEE--------eecCCCCEEEEEEeccCC-eEEEEecCC
Q 015198 39 FSDVDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFR--------RDLKSGGFRIVEMLFRCN-ILALVGAGD 107 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~l~s~~~ 107 (411)
..-.|.+.|+.+.+.|....+ |+++ .+.|.|||..+...... ..+.+|...-..++|++. ...+++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 346799999999999987655 4555 99999999875322221 123355555666788864 356777777
Q ss_pred CCCCCCCeEEEEECCCCcE-------EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcC--CceeeEEEeccCC
Q 015198 108 NSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV--DLKLLHQIETLAN 173 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~~~~-------~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~--~~~~~~~~~~~~~ 173 (411)
| +.|++||+..... ...+. |...|..++|++....++ .|+.+.|||++ +.+..+....|..
T Consensus 199 d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 D-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred C-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 7 9999999765422 22333 899999999998665444 79999999999 5666777788888
Q ss_pred CcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCC-
Q 015198 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG- 249 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~- 249 (411)
++.++.|.+.. .+++++|+.|++|.+|+.+. .++..+.+|...|.++.|+|.. ..||+++.|+. +.|||+..-
T Consensus 274 ~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig 350 (422)
T KOG0264|consen 274 EVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG 350 (422)
T ss_pred ceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence 77766666654 45666789999999998775 6788899999999999999976 48899999999 999998642
Q ss_pred -------------ceEEEEeCCCCCcceEEEEeCCCCCE-EEEEeCCCcEEEEEcccc
Q 015198 250 -------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 250 -------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~ 293 (411)
++++.-.+ |...|..+.|+|+..+ |++.++|+.++||+....
T Consensus 351 ~eq~~eda~dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cccChhhhccCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12222233 8899999999998875 678899999999999854
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.8e-21 Score=160.31 Aligned_cols=249 Identities=14% Similarity=0.167 Sum_probs=187.9
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----EcCeEEE
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV 156 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~dg~i~i 156 (411)
+......+.++.|+.+|..++++++| ..+++||..+++.++++. .+-.+..++|......+. .|.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 33456678899999999999998887 899999999999999998 566778888866554444 5889999
Q ss_pred EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEc
Q 015198 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATAS 235 (411)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (411)
.++.+.+.++.+.+|...+..++++|-. ..++ +++.|++|++|+.+.. +...+.....+ .++|+|+|-++|++.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~Fl-S~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFL-SSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEE-ecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 9999999999999999976666666655 3444 5779999999998854 44444333333 478999999999998
Q ss_pred CCCeEEEEEECCCC--ceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccc
Q 015198 236 TRGTLIRIFNTVDG--TRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL 312 (411)
Q Consensus 236 ~dg~~I~vwd~~~~--~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (411)
..+. |++||++.- .+..++... ......+.|.|||||++|+.++..+.+++.|--+|......+.+
T Consensus 160 ~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~---------- 228 (311)
T KOG1446|consen 160 GSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY---------- 228 (311)
T ss_pred CCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec----------
Confidence 8888 999999864 333444432 24568999999999999999999999999999998754321111
Q ss_pred ccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEe-CCcEEEEEEecCC
Q 015198 313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCSFDPVH 391 (411)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~ 391 (411)
.........++|+|+++++.+|+ ||++++|.+..
T Consensus 229 -------------------------------------------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t-- 263 (311)
T KOG1446|consen 229 -------------------------------------------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET-- 263 (311)
T ss_pred -------------------------------------------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC--
Confidence 00011224578999966666665 69999999965
Q ss_pred CCcEEE
Q 015198 392 GGEMLQ 397 (411)
Q Consensus 392 ~~~~~~ 397 (411)
|.++.+
T Consensus 264 g~~v~~ 269 (311)
T KOG1446|consen 264 GKKVAV 269 (311)
T ss_pred CcEeeE
Confidence 544443
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.4e-21 Score=162.06 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=182.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
...+.|.+|.|+|.+..|++++ ||.+++|+........ .+ .+...+.++.|.++...+.++ -| |.|+.+|
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~-~~~~plL~c~F~d~~~~~~G~-~d-----g~vr~~D 81 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KF-KHGAPLLDCAFADESTIVTGG-LD-----GQVRRYD 81 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--he-ecCCceeeeeccCCceEEEec-cC-----ceEEEEE
Confidence 3467899999999999999999 9999999998764333 33 678889999999866665554 44 9999999
Q ss_pred CCCCcEEEEEeecCceeEEEEcCC-eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 121 DHQSRCIGEFAFRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
+.++.....-.|...|.++.+.+. +.++. .|++|++||.+.......+.... .+.++...++ .|++ |..+.
T Consensus 82 ln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~--~LvV-g~~~r 155 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGN--RLVV-GTSDR 155 (323)
T ss_pred ecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCC--EEEE-eecCc
Confidence 999988887789999999999974 44444 89999999998754444444332 5666666654 3443 55789
Q ss_pred eEEEEEcCCcceEE---EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCCCCC-------cc
Q 015198 198 QVRIEHFGLNMIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDR-------AE 263 (411)
Q Consensus 198 ~i~i~~~~~~~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~-------~~ 263 (411)
.+.+|+.+.-.... -..-+-.+.++++-|++.=++.++-||. |.+=.++.. +....|+.|... -+
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 99998876522211 1234567899999998888999999999 887666554 344556552111 27
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
|++|+|+|-...||+|+.||.|.+||+.+.++..
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence 9999999999999999999999999999988664
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-21 Score=182.99 Aligned_cols=241 Identities=12% Similarity=0.156 Sum_probs=193.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
-.|...-+.|+|.|+|++|.+++ ||.|++|+.......-.. +..+...+.++....+ .+++++.+ ++|.+|
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-i~~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~y 81 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-IDISGELVSSIACYSN--HFLTGSEQ-----NTVLRY 81 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch-hhccCceeEEEeeccc--ceEEeecc-----ceEEEe
Confidence 36888899999999999999988 999999998754221111 1124444444443333 67777777 999999
Q ss_pred ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
.+.+++.-..+. +.-++++++++.+|.+++ .|-.|++.++.+......+.+|.. .+.++.++|++.+||++ +-
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvs-s~ 158 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVS-SC 158 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEE-ec
Confidence 999888765554 788999999999999998 688999999999988899999988 56677778888899875 57
Q ss_pred CCeEEEEEcCCcceE-EEec-------c-ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198 196 RGQVRIEHFGLNMIK-LINA-------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS 266 (411)
Q Consensus 196 dg~i~i~~~~~~~~~-~~~~-------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~ 266 (411)
||.|++|+.+...+. .+.+ - ...+..++|+|+|..|+....|+. |++|+..+++....+....+...+..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence 999999998764332 2211 1 345678999999888888888999 99999999999999988767777999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
++|+|+|+|||+++.||.|.|||+++-
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccc
Confidence 999999999999999999999999983
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=165.67 Aligned_cols=247 Identities=14% Similarity=0.150 Sum_probs=190.9
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPT 114 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~ 114 (411)
....|++-|..+...--|++||+++ |++|+|+...+... .+..+|.+|...+..+.|.. -+.+|++++.| |
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD-----g 80 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD-----G 80 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-----c
Confidence 4568999999999999999999999 99999999987665 56666778888888888765 68999999998 9
Q ss_pred eEEEEECCCCcEEEEEe---ecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccC
Q 015198 115 KVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHH 183 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 183 (411)
.|.||.-+.++-.+... |...|++++|.|.+ ..++ .||.|.+.+.+.. ...+....|...+..++++|.
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 99999977775444333 89999999999864 4444 7999999988643 122334556665666666664
Q ss_pred CC-c-----------eEEEEecCCCCeEEEEEcCC---cceEEEeccccceeEEEecCCC----CEEEEEcCCCeEEEEE
Q 015198 184 SS-T-----------SVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDG----LLLATASTRGTLIRIF 244 (411)
Q Consensus 184 ~~-~-----------~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I~vw 244 (411)
.- + +.|+ +|+.|..|+||..+. .....+.+|.+.|+.++|.|.- .+||+++.||+ +.||
T Consensus 161 ~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIw 238 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIW 238 (299)
T ss_pred CCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEE
Confidence 11 1 3355 467899999999887 5556689999999999999964 47999999999 9999
Q ss_pred ECCCC--ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 245 NTVDG--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 245 d~~~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
-.+.. .-..++... ....++.+.||..|+.|++++.|+.|.+|.-+..
T Consensus 239 t~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EecCccCccccccccc-CCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 76522 111122211 5568999999999999999999999999976544
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1e-22 Score=181.27 Aligned_cols=235 Identities=12% Similarity=0.227 Sum_probs=205.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
...-|.++.+.|||+.|++|+ -.++.|||+......++.++......+.+++.++|..+..++..| |.|.|||+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-----GnI~vwDL 538 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-----GNIAVWDL 538 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-----CcEEEEEc
Confidence 456789999999999999999 899999999876665666665556677888899999888888777 99999999
Q ss_pred CCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 122 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
.+...++.++ |...+.||.+++||..+. .|++|+.||+++++.+... .....++.+...|.+.++++ |-.++
T Consensus 539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh---dF~SQIfSLg~cP~~dWlav-GMens 614 (705)
T KOG0639|consen 539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH---DFSSQIFSLGYCPTGDWLAV-GMENS 614 (705)
T ss_pred ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh---hhhhhheecccCCCccceee-ecccC
Confidence 9999999999 999999999999998887 7999999999988766443 33446788888899899986 77889
Q ss_pred eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198 198 QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (411)
Q Consensus 198 ~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (411)
.+.|-..++.....+.-|+..|.++.|.+.|+++++.+.|+- +..|...-|..+...+ ....|.++.+|.|.++|+
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEEE
Confidence 999977777777888889999999999999999999999999 9999999999887776 567899999999999999
Q ss_pred EEeCCCcEEEEEc
Q 015198 278 VASDKGTVHIFSL 290 (411)
Q Consensus 278 s~s~dg~I~vwd~ 290 (411)
+|+.|....||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888875
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=3.7e-22 Score=177.72 Aligned_cols=244 Identities=12% Similarity=0.088 Sum_probs=193.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
-.|.+-|.++.++...+++.+|+.|.|+|||+..... +...........+..+...+|+..|+.|++- .++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ceee
Confidence 3688889999999999999999999999999974322 1222223456778888899999988888887 9999
Q ss_pred EEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 118 vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
|||+..-......+ ..-...+++.+||.++.+ .||.|.|||+.+...++.+.+|.....++.++. +|..|-
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~--dGtklW- 567 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK--DGTKLW- 567 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC--CCceee-
Confidence 99987765443333 235677899999998887 899999999999999999999998555555554 555554
Q ss_pred ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
+|+-|.+|+.|+.+......-......|.++-++|++.+|+.|-+++. +.|... ++...+.+.. |+..|.++.|.+
T Consensus 568 TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~-skp~kyqlhl--heScVLSlKFa~ 643 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHT-SKPEKYQLHL--HESCVLSLKFAY 643 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEec-CCccceeecc--cccEEEEEEecc
Confidence 588999999998765332222234678999999999999999999999 888875 4444455555 889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccccccC
Q 015198 272 NVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
-|+|+++.+.|+-+..|...-|...
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred cCceeeecCchhhhhhccCccccce
Confidence 9999999999999999998877643
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=5.9e-22 Score=176.99 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=151.8
Q ss_pred eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc----EEEEEe--ecCceeEEEEcCCeEEEE---Ec
Q 015198 81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR----CIGEFA--FRSDVRSVKLSRDRIVVV---LE 151 (411)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~----~~~~~~--~~~~i~~~~~~~~~~~~~---~d 151 (411)
..+.+|...|.++.+.+.|..+++|+.| .+|++||+.... ..+.+. ....|+++.|++.+..++ ..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 3455778888899999999999999998 999999975432 223333 467899999999876555 56
Q ss_pred CeEEEEEcCCceeeEEE------------eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceEEEe----
Q 015198 152 HKIYVYSFVDLKLLHQI------------ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLIN---- 213 (411)
Q Consensus 152 g~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~---- 213 (411)
...+++|-...+.+... ++|...+.+.+|.|...+.+| +++.||+++||+.+.. ..+.++
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl--T~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL--TCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE--EecCCCcEEEEecCCchhheeEEeeccC
Confidence 77899995443333222 234443444555555555454 5679999999997752 333333
Q ss_pred -ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCc--ceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
+..-+++.++|+++|++||+|..||. |.+|+..... ....+... |.. .|++|.||+||++|++-+.|++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeec-cCCCCceeEEEeccccchhhhccCCCceeee
Confidence 33457889999999999999999999 9999975432 22233322 444 89999999999999999999999999
Q ss_pred EccccccC
Q 015198 289 SLRVRVVG 296 (411)
Q Consensus 289 d~~~~~~~ 296 (411)
|++..++.
T Consensus 392 DLrq~kkp 399 (641)
T KOG0772|consen 392 DLRQFKKP 399 (641)
T ss_pred eccccccc
Confidence 99987754
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-20 Score=151.99 Aligned_cols=247 Identities=12% Similarity=0.140 Sum_probs=185.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce---EEeecCCCCEEEEEEeccC----CeEEEEecCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC----NILALVGAGDNS 109 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~ 109 (411)
.....|.+.|+|.+|+|+|++||+|+ |..|++.-++..... -..+|.-|...+..++|-. .+.++++++..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag- 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG- 161 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence 34567899999999999999999999 999998765431111 1122334555666666542 35677776552
Q ss_pred CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc--CC---CcceEEE
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--AN---LRGLCCL 180 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~--~~---~~~~~~~ 180 (411)
|..|++-|..+|+..+.+. |.+.|.++.-- ++-.++ .|.+|++||++-..++..+... .. ...+.++
T Consensus 162 ---dc~iy~tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 162 ---DCKIYITDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred ---cceEEEeecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4788888999999999988 88988887522 334444 7999999999888888777432 11 1345667
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeC
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRR 257 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~ 257 (411)
+.+|.+++|+. |-.|....+++.+ ++.++.+..|...|.++.|+|...++++++.|.. |++-|+... ..+..+..
T Consensus 238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEE
Confidence 77788888875 8889999996655 5788999999999999999999999999999999 999998532 11112222
Q ss_pred CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
..|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2378888899999999889999999999999764
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-22 Score=188.26 Aligned_cols=241 Identities=13% Similarity=0.194 Sum_probs=186.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee--cC---CCCEEEEEEeccC-CeEEEEecCCCCCCCCCeE
Q 015198 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD--LK---SGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~--~~---~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i 116 (411)
-+....+|+.+++-..+++++...++||.+.+........ +. .-...+..+.|.. ...++++++.. |.|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i 112 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVI 112 (839)
T ss_pred cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcE
Confidence 3566788899999999999998888999887543322221 11 1222334455663 34678888877 999
Q ss_pred EEEECCC---CcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 117 IIWDDHQ---SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 117 ~vwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
.+||+.. .+.+..+. |...+.++.|++....++ .||.|++||++..+....+......+..+.|++.+...+
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence 9999877 45555666 999999999998766555 799999999999888888888777788888888875433
Q ss_pred EEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcce
Q 015198 189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEI 264 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v 264 (411)
+ ++.+.|.+++|+.+. ++...+.+|.++|.++.|+|++.+||+|+.|+. |+|||..+++. +.++. ...+|
T Consensus 193 -~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv 266 (839)
T KOG0269|consen 193 -A-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPV 266 (839)
T ss_pred -E-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---eccee
Confidence 3 467899999999875 567788999999999999999999999999999 99999876543 44444 45689
Q ss_pred EEEEeCCCCCE-EEEEe--CCCcEEEEEccccc
Q 015198 265 YSIALSPNVQW-LAVAS--DKGTVHIFSLRVRV 294 (411)
Q Consensus 265 ~~l~~spdg~~-l~s~s--~dg~I~vwd~~~~~ 294 (411)
.++.|-|+.++ ||+++ .|-.|+|||++.+-
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 99999998764 56555 46789999998764
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-21 Score=163.70 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=181.3
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
.+...-.|..++.+++|.++. .+++|+ ||.|+++|+++...... ..|...+.++.+.+....+++|+.| +
T Consensus 46 ~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~i---gth~~~i~ci~~~~~~~~vIsgsWD-----~ 116 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQI---GTHDEGIRCIEYSYEVGCVISGSWD-----K 116 (323)
T ss_pred hhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcceee---ccCCCceEEEEeeccCCeEEEcccC-----c
Confidence 444566799999999999854 566777 99999999998655432 3677888888888877888999998 9
Q ss_pred eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCC--cceEEEccCCCceEEEE
Q 015198 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 191 (411)
+|++||.+....+..+.....|.++....+..++. .+..|.+||+++.....+.....-. +.++++-|+..| .++
T Consensus 117 ~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~ 194 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG--YVV 194 (323)
T ss_pred cEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--eEE
Confidence 99999988877777777777999999999888886 8999999999887655433332222 234455554444 333
Q ss_pred ecCCCCeEEEEEcC-C----cceEEEeccc---------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198 192 PGLQRGQVRIEHFG-L----NMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (411)
Q Consensus 192 ~g~~dg~i~i~~~~-~----~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (411)
++-||.|.+...+ . .....|+.|. -+|++|+|+|-...|+||+.||. |.+||+.+.+.+..+..
T Consensus 195 -sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 195 -SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK 272 (323)
T ss_pred -EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC
Confidence 6689999993332 2 3445566664 37999999999999999999999 99999999999988887
Q ss_pred CCCCcceEEEEeCCCCCEEEEEeC
Q 015198 258 GVDRAEIYSIALSPNVQWLAVASD 281 (411)
Q Consensus 258 ~~~~~~v~~l~~spdg~~l~s~s~ 281 (411)
.+..|..++|+.||..||+++.
T Consensus 273 --~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 273 --YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --CCCceEEEEeccCCCeEEEEec
Confidence 5678999999999999999874
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.1e-22 Score=174.36 Aligned_cols=248 Identities=12% Similarity=0.163 Sum_probs=192.8
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 37 TAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 37 ~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
...+..|.+.|..|++.. +..|.+|.|.+|+.|.++.. .... + .+...+..+..+.....+++++ ..|
T Consensus 102 ~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--p~~t-i-lg~s~~~gIdh~~~~~~FaTcG-------e~i 169 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--PLHT-I-LGKSVYLGIDHHRKNSVFATCG-------EQI 169 (433)
T ss_pred hheeecccCceeeEEecc-cceEEecCCcceeeeeccCC--ccee-e-eccccccccccccccccccccC-------cee
Confidence 345678999999999988 55566666999999998752 1222 2 3445556666666677888877 579
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
.|||.....++..+. .-..|.++.|+|-...++ .|+.|.+||++++.+++.+..... .-.++|+|+. +.++
T Consensus 170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPea-fnF~ 245 (433)
T KOG0268|consen 170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEA-FNFV 245 (433)
T ss_pred eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc---ccceecCccc-ccee
Confidence 999999999999999 667899999999876655 799999999999988877754432 2334555543 4445
Q ss_pred ecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 192 PGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
+|++|..++.++... .++....+|...|..++|+|.|+.+++|+.|.+ |+||..+.+.....+... --..|.++.|
T Consensus 246 ~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~ 323 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKY 323 (433)
T ss_pred eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEE
Confidence 688999999966543 677788999999999999999999999999999 999999877654333221 2246999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
|.|.+++++|++|+.|++|.-...++...++..
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r 356 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAKASEKLGVITPR 356 (433)
T ss_pred eccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence 999999999999999999998887776544443
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.9e-21 Score=161.97 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=175.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc--CCeEEEEecCCCCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPT 114 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~ 114 (411)
.....|.++|.+++|+.||..+++|+ |+.+++||+.+.+ ..... .|...+..+.|- .....|++|+.| .
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWD-----K 137 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWD-----K 137 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeee--ecccceeEEEEecCCCcceeEecccc-----c
Confidence 45668999999999999999999999 9999999999864 44444 445555555554 456699999999 9
Q ss_pred eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceee-EEEecc-CCCcceEEEccCCCceEEEE
Q 015198 115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL-HQIETL-ANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~ 191 (411)
+|+.||++...++.++..++.++++..-..-..++ .+..|.+|+++.+... +.+... ...+.++++..+.++. +.
T Consensus 138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--al 215 (347)
T KOG0647|consen 138 TLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--AL 215 (347)
T ss_pred ceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--Ee
Confidence 99999999999999999999999998877666666 8999999999765322 222211 1112445555565554 33
Q ss_pred ecCCCCeEEEEEc-CC--cceEEEecccc---------ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198 192 PGLQRGQVRIEHF-GL--NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 192 ~g~~dg~i~i~~~-~~--~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (411)
|+-+|.+.|-.. .. +.-..|+.|+. .|++|+|+|....|++++.||. +.+||-.....+++.+.
T Consensus 216 -GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~-- 291 (347)
T KOG0647|consen 216 -GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET-- 291 (347)
T ss_pred -eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc--
Confidence 778999999333 32 44556677763 5788999999999999999999 99999877777777666
Q ss_pred CCcceEEEEeCCCCCEEEEE
Q 015198 260 DRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~ 279 (411)
|..+|++..|+.+|.++|-+
T Consensus 292 ~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCccceeEecCCCCEEEEE
Confidence 88899999999999988765
No 113
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=163.92 Aligned_cols=277 Identities=13% Similarity=0.159 Sum_probs=200.9
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
-.|+.|++.|.+||+|. +|.|.|||+.+.... ..+..|...+.+++|++++..|++++.| ..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCCC
Confidence 68999999999999999 999999999986632 2355788899999999999999999998 999999999999
Q ss_pred EEEEEeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCCceeeEEEecc-CC--CcceEEEccCCCceEEEEecCCCCe
Q 015198 126 CIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETL-AN--LRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
+++.+.+..+|....|+|.. +.++ .+..-.+.++..++.. .+... .. .....+-.+++.|+++++ |...|.
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIit-GtsKGk 176 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIIT-GTSKGK 176 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEE-ecCcce
Confidence 99999999999999999854 3444 4555555565542211 11111 11 111122246777888765 778999
Q ss_pred EEEEE-cCCcceEEEeccc-cceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------ce--EEEEeCCCCCcceEEE
Q 015198 199 VRIEH-FGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------TR--LQEVRRGVDRAEIYSI 267 (411)
Q Consensus 199 i~i~~-~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~~--~~~~~~~~~~~~v~~l 267 (411)
+.+++ .+.+++..++-.. ..|..+.|+..|++|+.-+.|.. ||.|+++.- +. .+.+..-..+..-.++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99854 4456677666555 78999999999999999999999 999997621 11 1122211122345678
Q ss_pred EeCCCCCEEEEEeCC-CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198 268 ALSPNVQWLAVASDK-GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF 346 (411)
Q Consensus 268 ~~spdg~~l~s~s~d-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (411)
+|+.+|.+++.++.. ..++||.-..|.-.+-
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI------------------------------------------------ 287 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKI------------------------------------------------ 287 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeee------------------------------------------------
Confidence 999999999887753 4699999888864321
Q ss_pred ccccceEEEEeCC-CceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 347 SSEWSFAQFHIPE-VTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 347 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
++-+. .....+.|.+-..+++.-..|.+|||...-
T Consensus 288 --------LhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 288 --------LHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred --------ecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 11111 223457788877777777899999997763
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=8.6e-20 Score=165.85 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=155.9
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~ 134 (411)
..+++++ |+.+++||+++.+...... . ...+..+.|++++..+ +++..+ +.|++||+.+++.+..+....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCC
Confidence 4677777 9999999998765444332 2 2234567888887644 566665 999999999998887776445
Q ss_pred ceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-
Q 015198 135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI- 209 (411)
Q Consensus 135 ~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~- 209 (411)
.+..+.++|++..++ .++.|++||+++.+.+..+..... ...+.+++++.+++++......+.+|+......
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 567889999987654 478999999998887777753322 234556667777776543333455566554332
Q ss_pred EEEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCC---C--CcceEEEEeCCCCCEEEE-EeCC
Q 015198 210 KLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGV---D--RAEIYSIALSPNVQWLAV-ASDK 282 (411)
Q Consensus 210 ~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~---~--~~~v~~l~~spdg~~l~s-~s~d 282 (411)
..+. .......++|+|+|++|+++ ..++. |++||+.+++.+..+.... + ......++|+|+++++++ .+.+
T Consensus 151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 151 DNVL-VDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEE-cCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 2222 33455789999999988654 46888 9999999998777664211 1 112356889999998654 3456
Q ss_pred CcEEEEEcccccc
Q 015198 283 GTVHIFSLRVRVV 295 (411)
Q Consensus 283 g~I~vwd~~~~~~ 295 (411)
+.|.+||+++++.
T Consensus 229 ~~i~v~d~~~~~~ 241 (300)
T TIGR03866 229 NRVAVVDAKTYEV 241 (300)
T ss_pred CeEEEEECCCCcE
Confidence 6899999987653
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.2e-20 Score=171.10 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=195.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCC-CEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
.-....|.++||+.+.+.||++. +|.|.||++.. .......++++ ...+-.++|.+.+.++.++.. |.|..
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~E 94 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITE 94 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEE
Confidence 34578899999999999999999 99999999987 44444444443 455667888877776666554 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
||+.+++.+..+. ..+.|++++.+|.+..++ .||.++.++...++.............++++++++++..|+. |+
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~-Gs 173 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG-GS 173 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe-cc
Confidence 9999999999998 789999999999887776 789888888888777665544444457899999999877764 88
Q ss_pred CCCeEEEEEcCCcc-eEE----Ee----ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 195 QRGQVRIEHFGLNM-IKL----IN----AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 195 ~dg~i~i~~~~~~~-~~~----~~----~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
.||.|++|+..... +.. +. ....-|+++.|-.++ .|++|...|. |.+||...+.+++.+.. |.+.|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence 99999999876533 221 11 123357788887666 6899999999 99999999999999888 888999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
+++..+++.++++++.|+.|.-|...+++.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 999999999999999999999888877753
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=165.44 Aligned_cols=240 Identities=12% Similarity=0.134 Sum_probs=197.5
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
....||...|+.+.|+|+...+++++ |..|+||........... ..|...+..+..++++.++++++.| ++.
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~--~~h~~~V~~ls~h~tgeYllsAs~d-----~~w 327 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS--RPHEEPVTGLSLHPTGEYLLSASND-----GTW 327 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc--ccccccceeeeeccCCcEEEEecCC-----ceE
Confidence 45789999999999999999999999 999999998765433333 3678888889999999999999998 999
Q ss_pred EEEECCCCcEEEEEeec---CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 117 IIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
.+.|+.++..+....+. -.+++.+|+|||.+++ .|+.|++||+..+..+..|.+|..++ .+++++.+|.+|+
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v--k~i~FsENGY~La 405 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV--KAISFSENGYWLA 405 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce--eEEEeccCceEEE
Confidence 99999999998888764 4589999999999999 79999999999999899999988855 4556666778887
Q ss_pred EecCCCCeEEEEEcCC-cceEEEecc-ccceeEEEecCCCCEEEEEcCCCeEEEEEECC--CCceEEEEeCCCCCcceEE
Q 015198 191 CPGLQRGQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIYS 266 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~~ 266 (411)
+ +.+|+.|++|+.+. +..+.+... ..++.++.|.+.|.+|+.++.+=. |++++-. ...++..+.. |.+..+.
T Consensus 406 t-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st~ 481 (506)
T KOG0289|consen 406 T-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLSTG 481 (506)
T ss_pred E-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccce
Confidence 6 55899999998765 444444432 347999999999999999988866 6666633 3455555555 6778899
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
+.|..+.+++++++.|..++++.+
T Consensus 482 v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccchhheEEeec
Confidence 999999999999999999988865
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-20 Score=158.00 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=174.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE--eecCCCCEEEEEEeccC--CeEEEEecCCCCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP 113 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d 113 (411)
...+|.+-|.++.|.+-|+.+|+++ |++|+|||.+.....+. ...+.|...+..+.|.+ =|.++++++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D----- 82 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD----- 82 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-----
Confidence 4678999999999999999999999 99999999754333333 23346777777777653 47899999998
Q ss_pred CeEEEEECCC------C---cEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCc------eeeEEEe---
Q 015198 114 TKVIIWDDHQ------S---RCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL------KLLHQIE--- 169 (411)
Q Consensus 114 ~~i~vwd~~~------~---~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~------~~~~~~~--- 169 (411)
+++.||.-.. + ....++. ....|++++|.|. |..++ .||.++||+.-+. .+.+++.
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 9999998311 1 1122333 5789999999985 44444 7999999987432 2233332
Q ss_pred --ccCCCcceEEEccCCC---ceEEEEecCCC-----CeEEEEEcCC-----cceEEEeccccceeEEEecCCC----CE
Q 015198 170 --TLANLRGLCCLSHHSS---TSVLACPGLQR-----GQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDG----LL 230 (411)
Q Consensus 170 --~~~~~~~~~~~~~~~~---~~~l~~~g~~d-----g~i~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g----~~ 230 (411)
...+.....|+++++. ..+||+ |+.+ +.++||.... ..+..+.+|..+|+.|+|.|+- .+
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 0111123344555432 234554 5444 3777765543 2355667999999999999963 47
Q ss_pred EEEEcCCCeEEEEEECCCC--------------------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 231 LATASTRGTLIRIFNTVDG--------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
||+++.|| |+||.+... +.+..+.. |.+.|+.+.|+-.|..|++.+.||.|++|..
T Consensus 242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999998 999998631 12333444 8889999999999999999999999999987
Q ss_pred cccc
Q 015198 291 RVRV 294 (411)
Q Consensus 291 ~~~~ 294 (411)
.-.+
T Consensus 318 ny~n 321 (361)
T KOG2445|consen 318 NYNN 321 (361)
T ss_pred hhhh
Confidence 6543
No 118
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=2.9e-20 Score=157.33 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=170.3
Q ss_pred CeEEEEEcCCCCEEEEEe-CCcEEEEecCCC------------cceEEeecCCCCEEEEEEec-------cCCeEEEEec
Q 015198 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------KETFRRDLKSGGFRIVEMLF-------RCNILALVGA 105 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~s~ 105 (411)
-...+.|+|||..|++-+ |+.+++|++... .+...... .....+....| .|+..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence 456789999999999999 999999998421 11111222 22333444433 3677788888
Q ss_pred CCCCCCCCCeEEEEECCCCcEEEEEe---ec---CceeEEEEcCCeEEEE--EcCeEEEEEc-CCceeeEEEec--c--C
Q 015198 106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FR---SDVRSVKLSRDRIVVV--LEHKIYVYSF-VDLKLLHQIET--L--A 172 (411)
Q Consensus 106 ~~d~~~~d~~i~vwd~~~~~~~~~~~---~~---~~i~~~~~~~~~~~~~--~dg~i~iwd~-~~~~~~~~~~~--~--~ 172 (411)
+.+ .-|++||..+|+....+. |. ....+++|+|||..++ ....|++||+ +.|..-..+.. + .
T Consensus 130 sr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 130 SRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 887 999999999999888776 43 3456899999998887 7899999999 55543322211 1 1
Q ss_pred C-CcceEEEccCCCce-EEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198 173 N-LRGLCCLSHHSSTS-VLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (411)
Q Consensus 173 ~-~~~~~~~~~~~~~~-~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (411)
. .-.+.+++++|-.. .++ .|+....+-|+.. ...++..+-+|.+.|+.+.|.++|+.|++|......|..||++.-
T Consensus 205 gq~giisc~a~sP~~~~~~a-~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLA-VGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCccee-eecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 1 11234555555444 444 4778888888544 456788888999999999999999999998864433999999864
Q ss_pred -ceEEEEeCCCCCc-ceEE--EEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 250 -TRLQEVRRGVDRA-EIYS--IALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 250 -~~~~~~~~~~~~~-~v~~--l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
..+..+.+ |.. .-.. ....|++++|++|+.||.|++||++...
T Consensus 284 ~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 284 RDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred cchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 45666666 322 2233 4456899999999999999999999843
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2.4e-19 Score=162.94 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=171.5
Q ss_pred CCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEEC
Q 015198 45 IELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~ 121 (411)
..+.+++|+|+++.++ ++. ++.|++||..+.+...... .+ .....+.+++++..+ +++..+ +.|++||+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 3467899999999774 555 8999999998755433222 22 223456788877644 555555 89999999
Q ss_pred CCCcEEEEEeecCceeEEEEcCCeEEEE---Ec-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
.+++.+..+.....+.+++|+|++.+++ .+ ..+++||.++++....+..... ...+.+++++..+++++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcCCCC
Confidence 9988888877666678999999998887 23 4578889988877665543322 234555666777766666789
Q ss_pred eEEEEEcCCc-ceEEEeccc-----c--ceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198 198 QVRIEHFGLN-MIKLINAHD-----S--HIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 198 ~i~i~~~~~~-~~~~~~~~~-----~--~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (411)
.|++|+.... .+..+..+. . ....++|+|++++++.+ +.++. |.+||+++++.+..+. +...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence 9999887653 334443221 1 23468899999986554 45667 9999999988876654 234689999
Q ss_pred eCCCCCEEEEE-eCCCcEEEEEccccccCC
Q 015198 269 LSPNVQWLAVA-SDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 269 ~spdg~~l~s~-s~dg~I~vwd~~~~~~~~ 297 (411)
|+|+|++|+++ ..+|.|++||+++++...
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99999999876 468999999999988654
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.7e-20 Score=165.67 Aligned_cols=235 Identities=14% Similarity=0.181 Sum_probs=182.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
.+|...|.+++.++||+|||+|. |..|.||+.++.+.+.. +.+|...|..+.|.....-+.+++.| +.|++|
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~D-----rsvkvw 271 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASAD-----RSVKVW 271 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecC-----CceEEE
Confidence 48999999999999999999999 99999999998765544 45888899999998777777777777 999999
Q ss_pred ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
++.....+.++- |...|.+|....-++.+. .|.++++|++.. +..-.+.++...+.+++|--+. .++ +|+.
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~---Hfv-sGSd 346 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE---HFV-SGSD 346 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc---cee-eccC
Confidence 998888777765 999999999887777776 799999999944 3333556666656666665543 344 5999
Q ss_pred CCeEEEEEcCC-cceEEEe-cc-----------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCC
Q 015198 196 RGQVRIEHFGL-NMIKLIN-AH-----------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRG 258 (411)
Q Consensus 196 dg~i~i~~~~~-~~~~~~~-~~-----------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~ 258 (411)
+|.|.+|.... +++.... +| ..+|++++..|...++|+|+.+|. |++|-+..+ .++..+.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence 99999998654 3333321 12 238999999999999999999999 999999887 3444444
Q ss_pred CCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198 259 VDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR 291 (411)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~ 291 (411)
..+.|++|+|+++|++|++|. ....+-=|-..
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 567899999999999766653 33344444433
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.3e-20 Score=172.87 Aligned_cols=265 Identities=10% Similarity=0.130 Sum_probs=210.6
Q ss_pred CCCCCCCccCcccCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEec-
Q 015198 18 GSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF- 95 (411)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (411)
+.-.-|.....+..+..+-...++.|.+.|+.+....+++.|++++ |-+|++|+...........+..|...+.++++
T Consensus 47 g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ 126 (735)
T KOG0308|consen 47 GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI 126 (735)
T ss_pred ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec
Confidence 3334455555555555555667889999999999999999999999 99999999987543344446688899999998
Q ss_pred cCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe----------ecCceeEEEEcCCeEEEE---EcCeEEEEEcC
Q 015198 96 RCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA----------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV 160 (411)
Q Consensus 96 ~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~----------~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~ 160 (411)
..+...+++|+-| +.|.+||++++. .+..+. +...|++++.++.+..++ ..+.+++||.+
T Consensus 127 ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 127 AKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred ccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence 7888999999998 999999999873 232221 467899999999998888 57889999999
Q ss_pred CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCe
Q 015198 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
+++.+..+.+|...+ .++-.+++|..+++ ++.||+|++|+... +++.++..|...|+++..+|+-..+++|+.||.
T Consensus 202 t~~kimkLrGHTdNV--r~ll~~dDGt~~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 202 TCKKIMKLRGHTDNV--RVLLVNDDGTRLLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred cccceeeeeccccce--EEEEEcCCCCeEee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 999999999998844 45555566666665 67899999999875 678889999999999999999999999999999
Q ss_pred EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
|..=|+++......+.. ...+|..+..+...+-+-+++.|+.|+-|...-.
T Consensus 279 -i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 279 -IYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred -EEecccCCchhheEeec--CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 99999988543333333 4557888888865555677888999999987644
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=166.94 Aligned_cols=235 Identities=10% Similarity=0.108 Sum_probs=191.3
Q ss_pred CEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec
Q 015198 57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR 133 (411)
Q Consensus 57 ~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~ 133 (411)
++++++. ...+.+|.+.+....... + --+..+.++.-++++.+++.+... +.|++|.+.+|..+..+. |-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~-v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-I-VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-c-ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhhc
Confidence 4777777 667899998764443311 1 345567888889999999998766 999999999999998887 99
Q ss_pred CceeEEEEcCCeEEEE---EcCeEEEEEcC---------CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198 134 SDVRSVKLSRDRIVVV---LEHKIYVYSFV---------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
..|+++.|+.|+.+++ .||.|.+|.+. +-+.++.+..|.-++..+.+.+.+-...+++ .+.|.++++
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~ 202 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL 202 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence 9999999999999998 79999999872 3467788888888888777777765556654 669999999
Q ss_pred EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----------------CceEEEEeCCCCCcceE
Q 015198 202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~ 265 (411)
|+.....+..--.....+.+++++|-++.+++|+.+|. |.+.++.. +..+..+.++.....|+
T Consensus 203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 99987766555567788999999999999999999999 98887643 23455666743445999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 300 (411)
|++++-||.+|++|+.||.|.|||+.+.++.+.+.
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999999999999999999999999999887655
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.8e-19 Score=152.10 Aligned_cols=262 Identities=10% Similarity=0.082 Sum_probs=187.8
Q ss_pred EEEEEe-CCcEEEEecCCCc------ceE----EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198 58 CFAAGT-SCGFRIYNCEPFK------ETF----RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (411)
Q Consensus 58 ~la~g~-dg~i~iw~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~ 126 (411)
.|++|+ ...|.=++++... ... ...++.|...+.+++. ++.++++|+.| .+|+|||+.+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence 356666 6666556554322 111 1122455555665544 57889999998 9999999999988
Q ss_pred EEEEe-ecCceeEEEEcCCe---EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEE
Q 015198 127 IGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200 (411)
Q Consensus 127 ~~~~~-~~~~i~~~~~~~~~---~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~ 200 (411)
+..+- |.+.|+++.|.+.. .++. .||.|.+|+....+++..++.|...++.++++|++ ++-+ +-+.|+.++
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLAL-sVg~D~~lr 152 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLAL-SVGGDQVLR 152 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEE-EEcCCceee
Confidence 88876 99999999999876 3444 89999999999999999999999876666666665 4433 445899999
Q ss_pred EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198 201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (411)
Q Consensus 201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (411)
+|+.-.........-....+.+.|+|.|.+++.+..++ |-+|.+.+......+.. +..+.++.|- ++..|++|.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence 99865433333322233334599999999988888775 89999988777666653 3467777774 567899999
Q ss_pred CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCC
Q 015198 281 DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV 360 (411)
Q Consensus 281 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
+|+.|.+||.+...+......| +..
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH-------------------------------------------------------~~R 251 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAH-------------------------------------------------------ENR 251 (362)
T ss_pred CCceEEEeccCCCccceeeecc-------------------------------------------------------hhh
Confidence 9999999999986654333333 012
Q ss_pred ceEEEEEccC--CEEEEEEeCCcEEEEEEecC
Q 015198 361 THFIAAFGSQ--NTVVIVSMDGSFYRCSFDPV 390 (411)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~~ 390 (411)
++.+..+..+ ..|+++++||.+.+|.++.+
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 3334444432 68999999999999999975
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=164.98 Aligned_cols=241 Identities=19% Similarity=0.221 Sum_probs=191.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCC-EEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
...+|.+..|.|+|. .+++++ ..-+..||+.+.+........+.. ..+..+..++++.+++..+.. |.|.+.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL 330 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL 330 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence 356889999999999 777777 888999999875543322222222 234445567788788888877 999999
Q ss_pred ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
...+++.+..++..+.|..+.|+.+++.+. .+|.|++||++...+++.+.... .+....++.+.++.++|+ |+..
T Consensus 331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~-GS~~ 408 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLAT-GSDS 408 (514)
T ss_pred hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEe-ccCc
Confidence 999999999999999999999999998777 58999999999999998886543 345566776777778875 8999
Q ss_pred CeEEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcC--CCeEEEEEECCCCceEEEEeCCC-CCcceEE
Q 015198 197 GQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRGV-DRAEIYS 266 (411)
Q Consensus 197 g~i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~ 266 (411)
|.|.||+.+. +++..+..-...|++++|++++++||.+|. +.. +++-.+.+......+.... .-+.|+|
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEE
Confidence 9999987543 556666667789999999999999988775 455 8998888877666665421 2247999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
++|+|.+.+||.|..+|.+.+|.+.
T Consensus 488 ~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999999999999985
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=3.7e-20 Score=171.04 Aligned_cols=233 Identities=13% Similarity=0.213 Sum_probs=190.8
Q ss_pred cCCCCCCeEE-EEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 40 SDVDEIELIS-VSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 40 ~~~h~~~V~~-l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
..+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........+. +.+|...+.++.-..++. +++|+.| .++
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~~-~iSgSWD-----~Ta 124 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDGT-LISGSWD-----STA 124 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh--hhccccceeeeecCCcCc-eEecccc-----cce
Confidence 5567777877 88875 455688888 99999999987665554 458899999988777777 8999998 999
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
++|- .+++...++ |...|+++..-|++.++. .|..|++|. .++.++++.+|...+..+++- +++.++ ++
T Consensus 125 kvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl--~~~~fl--Sc 196 (745)
T KOG0301|consen 125 KVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVL--DDSHFL--SC 196 (745)
T ss_pred EEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEe--cCCCeE--ee
Confidence 9998 445555566 999999999999997777 899999998 478999999998855544444 444444 45
Q ss_pred CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198 194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (411)
Q Consensus 194 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (411)
+.||.|++|+.++..+..+.+|..-|++++...++..++++++|++ ++||+.. ++.+.+.- ....|+++.+-++|
T Consensus 197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG 271 (745)
T ss_pred cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence 6999999999999999999999999999998888889999999999 9999865 77777773 23389999998888
Q ss_pred CEEEEEeCCCcEEEEEccccc
Q 015198 274 QWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 274 ~~l~s~s~dg~I~vwd~~~~~ 294 (411)
. |++|+.||.|+||-.+...
T Consensus 272 D-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 272 D-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred C-EEEeccCceEEEEEecccc
Confidence 7 6788999999999887543
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=9.1e-20 Score=168.47 Aligned_cols=291 Identities=14% Similarity=0.178 Sum_probs=210.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-----CCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
..+.||++.|+++.|+|.+..|++++ |.++.+|.-+....+..... .+.........|++++..+++-+..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--- 337 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--- 337 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence 34679999999999999998888888 99999999876533333222 2234457888999999888888877
Q ss_pred CCCeEEEEECCCC-cEEEE--Ee-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEE---eccCCCcceEEE
Q 015198 112 PPTKVIIWDDHQS-RCIGE--FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQI---ETLANLRGLCCL 180 (411)
Q Consensus 112 ~d~~i~vwd~~~~-~~~~~--~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~ 180 (411)
|..++|..+.. ..... +. |-..|.++.|+|.|.++. .|-+-++|-.-..+ .-+.+ +.|.....++++
T Consensus 338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999993332 22222 22 889999999999999887 68888887643111 11222 233333333333
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcCC------------------------------------------------------
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFGL------------------------------------------------------ 206 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~~------------------------------------------------------ 206 (411)
-.. +- .+ .+|.+...++++....
T Consensus 416 vn~-~~-~F-VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 416 VNE-DL-QF-VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred ccC-Cc-ee-eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 332 22 22 2344555555543211
Q ss_pred -----------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCe----EEEEEECCCCceEEEEeCCC
Q 015198 207 -----------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 207 -----------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~ 259 (411)
..++.+.+|...|++++.+|+|+++|++..... .|++|+..+...++.+..
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-- 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-- 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence 113445689999999999999999999875432 499999988888888888
Q ss_pred CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccc
Q 015198 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR 339 (411)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (411)
|.-.|+.|+|||||++|++.+.|.++.+|........+
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e------------------------------------------ 608 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE------------------------------------------ 608 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh------------------------------------------
Confidence 88899999999999999999999999999986655332
Q ss_pred cccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecC
Q 015198 340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV 390 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~ 390 (411)
..|+..+.+...+..|.|+|+ ..+++++-|-.|.+|.....
T Consensus 609 ----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 609 ----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ----------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 224556667778888999999 55888888999999998864
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=165.72 Aligned_cols=218 Identities=12% Similarity=0.182 Sum_probs=175.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
-.++|.+++-+|+|.+|+.|+ .|.+++|.+.++..+... ..|-..+.++.|+.|+..+++++.| |.|.+|.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~vW~l 152 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKD-----GAVLVWLL 152 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCC-----ccEEEEEE
Confidence 467899999999999999998 999999999997655443 4888899999999999999999998 99999984
Q ss_pred C---------CCcEEEEEe-ecCceeEEEEcCCe---EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 122 H---------QSRCIGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 122 ~---------~~~~~~~~~-~~~~i~~~~~~~~~---~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
. +-++++.+. |.-+|+++...+.+ +++. .|.++++||+..+.++..+.... ...++..+|-.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae 229 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAE 229 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccc
Confidence 2 235566666 88999999987653 3332 79999999999999988876433 44455555544
Q ss_pred eEEEEecCCCCeEEEEEcCC-----------------cceEEEecccc--ceeEEEecCCCCEEEEEcCCCeEEEEEECC
Q 015198 187 SVLACPGLQRGQVRIEHFGL-----------------NMIKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~-----------------~~~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (411)
..+ +.|..+|.|.+.+... ..+..+.+|.. +|+|++++-||.+|++|+.||. |+|||+.
T Consensus 230 ~~~-yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~ 307 (476)
T KOG0646|consen 230 RVV-YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIY 307 (476)
T ss_pred cEE-EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecc
Confidence 454 4588999999843321 33566778988 9999999999999999999999 9999999
Q ss_pred CCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198 248 DGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (411)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (411)
+.++++++.. ..++|+.+.+.|-.+
T Consensus 308 S~Q~iRtl~~--~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 308 SKQCIRTLQT--SKGPVTNLQINPLER 332 (476)
T ss_pred hHHHHHHHhh--hccccceeEeecccc
Confidence 9999888875 567899999976544
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=4.9e-19 Score=166.86 Aligned_cols=246 Identities=17% Similarity=0.134 Sum_probs=185.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~ 115 (411)
....++...|+++.=+|-=..+|+|. +|+|.|+|+...+.+.... .....+.++.|..||. .++++... |.
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~-----G~ 268 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSN-----GD 268 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCC-----ce
Confidence 44567889999999999999999999 9999999999866655543 3358899999998875 45555554 88
Q ss_pred EEEEECCCCcEEEEEe--ecC-----------------------------------------------------------
Q 015198 116 VIIWDDHQSRCIGEFA--FRS----------------------------------------------------------- 134 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~--~~~----------------------------------------------------------- 134 (411)
+.+||++..+.+..+. |.+
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999987655443332 211
Q ss_pred --------------------------------------------------------------------------------
Q 015198 135 -------------------------------------------------------------------------------- 134 (411)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (411)
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence
Q ss_pred ---------------------ceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE---eccCCCcceEEEccCCCce
Q 015198 135 ---------------------DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 135 ---------------------~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 187 (411)
.+++++.++.|++.+ ..|.|-+|++++|-....+ ..|.. .+..++.+.-++
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~~n~ 506 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDGTNR 506 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecCCCc
Confidence 122333333333333 3566666666666555555 23444 455666666667
Q ss_pred EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
.+++ ++.+|.+++|+...+.+..--.-...+.++..+....+++.+..|-. |+++|..+.+.++.|.+ |.+.|+++
T Consensus 507 ~~vs-a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~ 582 (910)
T KOG1539|consen 507 LLVS-AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDM 582 (910)
T ss_pred eEEE-ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeee
Confidence 7766 55899999999988764443345667888888888888999999998 99999999999999999 88999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+|||||+||++++.|++|++||+.++...
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 99999999999999999999999999854
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=5e-18 Score=151.75 Aligned_cols=274 Identities=12% Similarity=0.144 Sum_probs=209.7
Q ss_pred CCCCCeEEEEEcCCCCEEEE-EeCCcEEEEecCCCcceEEeec--CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 42 VDEIELISVSWNQDYGCFAA-GTSCGFRIYNCEPFKETFRRDL--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~-g~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
...+.|....|+|.+..|++ .+.+.+..|+.+......+..+ +.....+.++.|.+++..+.+.+. |.|.|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~I 271 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILI 271 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEE
Confidence 34566788999998765554 4599999999887544333222 233478899999999987766444 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
|+..+.+..+... |++.|.+++...+|.++. .|..|..|| ..-+.++.++.+...-.+..+...... ++ + |..
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~-v-GTt 347 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-IL-V-GTT 347 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EE-E-eec
Confidence 9987777766655 999999999999999998 899999999 555566666555544455566655433 33 2 545
Q ss_pred CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198 196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (411)
Q Consensus 196 dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (411)
.+.|.-=...........+|......++.+|+...+++++.|+. +++|+ ..+++.+.. ...++.++.|+|.| .
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~ 420 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-V 420 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-e
Confidence 55665544555555666789999999999999999999999999 99999 555555544 34478999999999 9
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198 276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (411)
||.|...|...|.|.++..- .++
T Consensus 421 va~Gt~~G~w~V~d~e~~~l---------------------------------------------------------v~~ 443 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQDL---------------------------------------------------------VTI 443 (626)
T ss_pred EEEeeccceEEEEeccccee---------------------------------------------------------EEE
Confidence 99999999999999988542 245
Q ss_pred EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
+.......++.|+++ ..|++++.|+.+|+|.++.
T Consensus 444 ~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 444 HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 555567889999999 7788888899999999997
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.1e-21 Score=179.95 Aligned_cols=220 Identities=17% Similarity=0.280 Sum_probs=183.4
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS 134 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~ 134 (411)
.+++... +-.+++|+..... .|...+-++..-.....+++|+.| ..+-+|.+..-..+..+. |..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~~--------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREFV--------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred cccceeeeeeccccccchhhh--------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCC
Confidence 3444444 6667788865311 233333343335567788899988 888899988777777766 999
Q ss_pred ceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceE
Q 015198 135 DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIK 210 (411)
Q Consensus 135 ~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~ 210 (411)
+|.++.|+++..+++ .+|.|++||++..+.++.+.+|... ++.+.|+|-+.+.+ +|+.|+.+++|+.. ..+..
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~ 148 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSH 148 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeeccceEEec-cccccccceehhhhccCcee
Confidence 999999999998888 7999999999999999999888874 44555777777774 58999999999987 68899
Q ss_pred EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 211 LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
.+.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|.. |.+.+..+.|+|..-+++.|+.|++|++||+
T Consensus 149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeecc
Confidence 99999999999999999999999999999 99999999999999998 8889999999999999999999999999999
Q ss_pred ccccc
Q 015198 291 RVRVV 295 (411)
Q Consensus 291 ~~~~~ 295 (411)
++-+.
T Consensus 226 etfe~ 230 (825)
T KOG0267|consen 226 ETFEV 230 (825)
T ss_pred ceeEE
Confidence 97653
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.9e-19 Score=163.77 Aligned_cols=253 Identities=15% Similarity=0.141 Sum_probs=186.3
Q ss_pred ccCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEec
Q 015198 29 SASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGA 105 (411)
Q Consensus 29 ~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~ 105 (411)
-.+|+........+|++.|.+|+..|.|.+|++|+ ||+|+||.+.++..+....+ .. .|.+++|+|. ..+|+.+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~--~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DS--EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cc--eeEEEEecCCCCceeEEEE
Confidence 34555556667889999999999999999999999 99999999999888877766 33 4556666653 3333332
Q ss_pred CCC---------------------------CCCCCCeEEEEECCC---C--cEEEEEeecCceeEEEEcCCeEEEE----
Q 015198 106 GDN---------------------------SQYPPTKVIIWDDHQ---S--RCIGEFAFRSDVRSVKLSRDRIVVV---- 149 (411)
Q Consensus 106 ~~d---------------------------~~~~d~~i~vwd~~~---~--~~~~~~~~~~~i~~~~~~~~~~~~~---- 149 (411)
-.+ ....+..+..|.-.. . .....+.|...|..+.|+..|.+++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 221 012345666776331 1 1223456899999999999999998
Q ss_pred --EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC
Q 015198 150 --LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL 226 (411)
Q Consensus 150 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp 226 (411)
....|.|+++...+....|..... .+.+..++|...+|+++ ....|+|++... ..++.+......|..++++|
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 356899999977665555544344 34444455544555543 467899966554 55666777788899999999
Q ss_pred CCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 227 DGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
.|..|+.++.|+. +..||+.-+ +..+++.- |...+++++|++.-.++++|+.||++.||.-.
T Consensus 618 ~GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 618 NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred CCCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 9999999999999 999999755 45566665 88899999999999999999999999998643
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.6e-20 Score=149.94 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=186.4
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc---EEEEEe-ecCceeEEEEcC--CeEEEE---EcCeEE
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIY 155 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~---~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg~i~ 155 (411)
.|...|.....+--+..|++++.| ++|+|+.++.+. .+.++. |.++|..++|.. -|.+++ .||+|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 344444444444557889999988 999999987654 456666 999999999976 688888 799999
Q ss_pred EEEcCCce--eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccccceeEEEecCC--
Q 015198 156 VYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD-- 227 (411)
Q Consensus 156 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~-- 227 (411)
||.-.+++ .......|...+..++++|+.-+..|++ ++.||.|.|...+.. ..+....|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 99987763 3345567788888999999998888877 678999999444332 34455789999999999985
Q ss_pred -C-----------CEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCC----CEEEEEeCCCcEEEEE
Q 015198 228 -G-----------LLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGTVHIFS 289 (411)
Q Consensus 228 -g-----------~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~I~vwd 289 (411)
| +.|++|+.|.. |+||+..+++ .-+++.+ |...|+.++|.|.- .+||+++.||++.||-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 56999999999 9999987763 3344666 88999999999964 4799999999999998
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS 369 (411)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
.+ .+..+ |...-.+--......+.|+.
T Consensus 240 ~~-~e~e~----------------------------------------------------wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 240 KD-EEYEP----------------------------------------------------WKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred ec-CccCc----------------------------------------------------ccccccccCCcceEEEEEec
Confidence 87 22110 00000110113567788998
Q ss_pred C-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 015198 370 Q-NTVVIVSMDGSFYRCSFDPVHGGEMLQ 397 (411)
Q Consensus 370 ~-~~~~~~~~dg~~~~~~~~~~~~~~~~~ 397 (411)
. +.|.+++.|..|.+|.-.. .|+...
T Consensus 267 sGn~LaVs~GdNkvtlwke~~--~Gkw~~ 293 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV--DGKWEE 293 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC--CCcEEE
Confidence 7 7788888899999998877 445544
No 133
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=7.1e-20 Score=169.62 Aligned_cols=242 Identities=14% Similarity=0.204 Sum_probs=188.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC---CeEEEEecCCCCCCCCCe
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTK 115 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~d~~ 115 (411)
.-+..-.|.+++.+|+|++||+|. -|+++||++...+.....+ .|...|.++.|+. ...+|++++.| ..
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrd-----Rl 527 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRD-----RL 527 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCC-----ce
Confidence 334566799999999999999999 9999999998766655554 7888899888874 35789999998 99
Q ss_pred EEEEECCCC-cEEEEEe-ecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCceeeEEEeccC---CCcceEEEccCCC
Q 015198 116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSS 185 (411)
Q Consensus 116 i~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 185 (411)
|.|+|+... ..++++. |...|+++.|.-.| ...+ .|..|.+--.+.......+..+. ...+...+..+|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 999997654 5566676 89999999998766 2233 45555432222111111222111 2225566777777
Q ss_pred ceEEEEecCCCCeEEEEEc-CCcceEEEec---cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198 186 TSVLACPGLQRGQVRIEHF-GLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR 261 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~ 261 (411)
.++++. ++.|..|+|++. .++..+.|++ |++....+...|.|.||++...|.+ +.++|..+|+++.+..+ |.
T Consensus 608 ~k~v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--Hs 683 (1080)
T KOG1408|consen 608 SKLVVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--HS 683 (1080)
T ss_pred cceEEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--cc
Confidence 777776 569999999654 5677777764 5677888999999999999999999 99999999999999998 88
Q ss_pred cceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
..|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEECch
Confidence 8999999999999999999999999999864
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.3e-21 Score=178.63 Aligned_cols=235 Identities=11% Similarity=0.154 Sum_probs=201.9
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
.......|...|.++..-..++.+++|+ |..+.+|.+.....+.. +..|...|-++.|+....+++.|..+ |
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~~E~Llaagsas-----g 92 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDTSERLLAAGSAS-----G 92 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCcchhhhcccccC-----C
Confidence 3456778999999999988889999999 88889999876554444 44888899999999999999999988 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
+|++||++.++.++++. |...+..+.|+|-+.+.+ .|+.+++||++...+.+.+.+|...+. .+.+.|+|.+++
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~--~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD--VLRLSPDGRWVA 170 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE--EEeecCCCceee
Confidence 99999999999999887 899999999999999997 799999999998889999988776444 445556677887
Q ss_pred EecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
. |+.|..++||+.. ++....|+.|.+.+..+.|+|..-++++|+.|+. +++||+++.+.+..... ....|.++.|
T Consensus 171 ~-g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~f 246 (825)
T KOG0267|consen 171 S-GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAF 246 (825)
T ss_pred c-cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeee
Confidence 6 6679999998875 5677889999999999999999999999999999 99999999888877766 5678999999
Q ss_pred CCCCCEEEEEeCCC
Q 015198 270 SPNVQWLAVASDKG 283 (411)
Q Consensus 270 spdg~~l~s~s~dg 283 (411)
+|++..+++|....
T Consensus 247 n~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 247 NPDGKIVLSGEQIS 260 (825)
T ss_pred cCCceeeecCchhh
Confidence 99999888876554
No 135
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.6e-19 Score=149.35 Aligned_cols=205 Identities=16% Similarity=0.248 Sum_probs=157.3
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-----EEEEEeecCceeEEEEcCCeEEEE----EcCe
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSRDRIVVV----LEHK 153 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~----~dg~ 153 (411)
+++|...+.+++|+.||..|++++.| +.|++|+++... +++.--.-+..+.+.|.||.+-++ ...+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 46889999999999999999999998 999999987632 222211234677899999987666 6788
Q ss_pred EEEEEcC---CceeeEEE---e---c-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEE
Q 015198 154 IYVYSFV---DLKLLHQI---E---T-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT 223 (411)
Q Consensus 154 i~iwd~~---~~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~ 223 (411)
+++|.+. +|.....+ . . ....+.++.+-..+.+.+|++ ++.|..|.||+..++.+..+......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence 9999873 22221111 0 0 112234455556666677765 6789999999999999999988888888899
Q ss_pred ecCCCCEEEEEcCCCeEEEEEECC---CC-----ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 224 LTLDGLLLATASTRGTLIRIFNTV---DG-----TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~---~~-----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.+|+|++|++++-.-. |++|.+- .| ..+..+++ |...|..++|+++...+++.+.||+++|||++-.-+
T Consensus 236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 9999999999998888 9999863 23 23456666 999999999999999999999999999999986543
Q ss_pred C
Q 015198 296 G 296 (411)
Q Consensus 296 ~ 296 (411)
.
T Consensus 313 ~ 313 (420)
T KOG2096|consen 313 A 313 (420)
T ss_pred c
Confidence 3
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=5e-19 Score=152.79 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=148.1
Q ss_pred cCCeEEEEecCCCCCCCCCeEEEEECCC----------------CcEEEEEe-ecCceeEEEEcC--CeEEEE--EcCeE
Q 015198 96 RCNILALVGAGDNSQYPPTKVIIWDDHQ----------------SRCIGEFA-FRSDVRSVKLSR--DRIVVV--LEHKI 154 (411)
Q Consensus 96 ~~~~~~l~s~~~d~~~~d~~i~vwd~~~----------------~~~~~~~~-~~~~i~~~~~~~--~~~~~~--~dg~i 154 (411)
.++..+.++-++. |.|.||++.. .+++.++. |...=++++|+| .|.++. .-+.|
T Consensus 162 ~~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I 236 (440)
T KOG0302|consen 162 LGNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGI 236 (440)
T ss_pred cCCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccce
Confidence 3466777777776 9999999642 34556665 788889999999 444444 35779
Q ss_pred EEEEcCCceee---EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCC
Q 015198 155 YVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDG 228 (411)
Q Consensus 155 ~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g 228 (411)
++|...++.-. ..+.+|...+..++++|..++ ++++++-||+|+||+.+.. .....+.|.+.|+.|.|+.+-
T Consensus 237 ~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~--vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 237 HLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG--VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE 314 (440)
T ss_pred EeeeeccCceeecCccccccccchhhhccCCccCc--eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc
Confidence 99998776432 234557776666677776654 4456789999999998875 344558999999999999988
Q ss_pred CEEEEEcCCCeEEEEEECCC---CceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEEcccccc
Q 015198 229 LLLATASTRGTLIRIFNTVD---GTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.+||+|+.||. ++|||++. ++++.+|+. |..+|++|.|+|. ...|++++.|.+|.+||+..-.-
T Consensus 315 ~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 315 PLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 89999999999 99999975 567888988 8899999999985 45788899999999999987554
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=3e-18 Score=153.11 Aligned_cols=231 Identities=14% Similarity=0.144 Sum_probs=175.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
..|++.|.++..-.+|.+|. |+ |+.|..|| +..++....++......+..+.-.... ++++.+. +.|..=
T Consensus 284 ~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~vGTtr------N~iL~G 354 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-ILVGTTR------NFILQG 354 (626)
T ss_pred eecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EEEeecc------ceEEEe
Confidence 38999999999999998887 88 99999999 444555555564544555555544444 5555544 666666
Q ss_pred ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
.++++-.+..+.|......++.+|+...++ .|+.+++|+ ..+++....... ...+..++|.+ .+|. |...
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~-Gt~~ 427 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAV-GTAT 427 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEE-eecc
Confidence 777777777777988999999999887776 799999999 445554443322 34556666666 5554 7788
Q ss_pred CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198 197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (411)
Q Consensus 197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (411)
|...+-+...+.+..+.....++++++|+|+|.+||.|+.|+. |+||-+..+.......+..+..+|+.+.|++|+++|
T Consensus 428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 8888866555655556555899999999999999999999999 999988765444333333345799999999999999
Q ss_pred EEEeCCCcEEEE
Q 015198 277 AVASDKGTVHIF 288 (411)
Q Consensus 277 ~s~s~dg~I~vw 288 (411)
.+-+.|-.|..|
T Consensus 507 ~~~S~d~eiLyW 518 (626)
T KOG2106|consen 507 VSNSGDYEILYW 518 (626)
T ss_pred EeccCceEEEEE
Confidence 999999999999
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=1.9e-19 Score=158.97 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=156.2
Q ss_pred EEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce----------eeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 128 GEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK----------LLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 128 ~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
..+.|.+.|+.+.+.|+...++ ..+.|+|||..... +-..+.+|......+++.+...+.++ +|
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll--s~ 196 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL--SG 196 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe--ec
Confidence 3456999999999999887776 57899999984321 11256677663344455555454443 57
Q ss_pred CCCCeEEEEEcCC--------cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCC--CceEEEEeCCCCCc
Q 015198 194 LQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRA 262 (411)
Q Consensus 194 ~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~ 262 (411)
+.|+.|.+|+.+. .+...+.+|...|..++|++-. .++++++.|+. +.|||+++ .+......+ |.+
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-L~iwD~R~~~~~~~~~~~a--h~~ 273 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-LMIWDTRSNTSKPSHSVKA--HSA 273 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-EEEEEcCCCCCCCcccccc--cCC
Confidence 7999999999875 3456778999999999999854 57889999999 99999994 455555555 899
Q ss_pred ceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198 263 EIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV 341 (411)
Q Consensus 263 ~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (411)
.|++++|+| ++..||+|+.|++|.+||+++-+..
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--------------------------------------------- 308 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--------------------------------------------- 308 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---------------------------------------------
Confidence 999999999 5567889999999999999987642
Q ss_pred cCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198 342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~ 389 (411)
+.++.-+++.+..+.|+|+ ..|++.|.||++.+|.+..
T Consensus 309 ----------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 309 ----------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ----------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 2345556678889999998 6677778899999999985
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=9.2e-19 Score=156.09 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=180.0
Q ss_pred eEEEEEcCCCCEEEEEe---CCcEEEEecCCC-cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 47 V~~l~~s~~g~~la~g~---dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
+.++.|+.... |++++ |..+++|.-+.. ..+..... .......++.......++++++.. ++|+|||++
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~-----~~Vkiwdl~ 109 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQS-----GCVKIWDLR 109 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcC-----ceeeehhhH
Confidence 89999988775 44443 888999976532 11111111 111123333333445888888887 999999999
Q ss_pred CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198 123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 123 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
...+++.++ |...|+++.++-...+++ ..|.|.|..+.++.....+....+. .+.-+.+++..++++.+.+.+|.
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeeccCCe
Confidence 777777777 999999999999888888 6789999999988877777655332 23345555555667677789999
Q ss_pred EEEEEcCCcc--eEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198 199 VRIEHFGLNM--IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (411)
Q Consensus 199 i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (411)
|.+|+.++.. ......|..+...|+|+|.. .+|++.+.|.. |.+||+...+....+. ...+...++|+++|.+
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSECGTY 264 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecCCceE
Confidence 9999998743 33447899999999999965 47889999999 9999998877766665 3458999999999999
Q ss_pred EEEEeCCCcEEEEEcccccc
Q 015198 276 LAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~~~ 295 (411)
|+.|+..|.|..||++..+.
T Consensus 265 L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred EEeecCCceEEEEecccCCC
Confidence 99999999999999998763
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.8e-18 Score=142.30 Aligned_cols=192 Identities=12% Similarity=0.175 Sum_probs=149.3
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCc----------EEEEE--e----ecCceeEEEEcCC--eEEEE--EcCeEEEE
Q 015198 98 NILALVGAGDNSQYPPTKVIIWDDHQSR----------CIGEF--A----FRSDVRSVKLSRD--RIVVV--LEHKIYVY 157 (411)
Q Consensus 98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~----------~~~~~--~----~~~~i~~~~~~~~--~~~~~--~dg~i~iw 157 (411)
.+.++++|+.| |.|.+||++... .+..+ + |+-.|.++.|-|- |.+.. .|.++++|
T Consensus 55 egrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVW 129 (397)
T KOG4283|consen 55 EGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVW 129 (397)
T ss_pred cceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEe
Confidence 57888899988 999999987532 11111 1 5678999999884 44444 79999999
Q ss_pred EcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCE-EEEEc
Q 015198 158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLL-LATAS 235 (411)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-l~s~s 235 (411)
|..+.+....|+... .+...++++-.-...|+++|..+-.|++ +...+.....+.+|...|.++.|+|...+ |++|+
T Consensus 130 DtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 130 DTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ecccceeeEEeecCc-eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecC
Confidence 999988887776543 3444556655444456667889999999 77778889999999999999999998874 78999
Q ss_pred CCCeEEEEEECCCC-ceEEEEe------------CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 236 TRGTLIRIFNTVDG-TRLQEVR------------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 236 ~dg~~I~vwd~~~~-~~~~~~~------------~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.||. |++||++.. .+...+. ...|.+.|..++|+.|+.++++++.|..+++|+..+|+..
T Consensus 209 aDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 209 ADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred CCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 9999 999999754 2222222 2236778999999999999999999999999999998754
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.7e-18 Score=162.70 Aligned_cols=241 Identities=13% Similarity=0.133 Sum_probs=185.5
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-cEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCC
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD 161 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~ 161 (411)
.|..+...++|.+++.++++++.| +.|++|+...- +.-..+. +...|.+++......+.. .+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 466668889999999999999988 99999996655 4444444 778888888777644444 899999999987
Q ss_pred ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeE
Q 015198 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (411)
++.-..+....-++.+++ ++.+|.++|+ |+.|-.|++ ...+......+.+|.++|.++.|+|++++||+.+-||.
T Consensus 86 ~~~~~iL~Rftlp~r~~~--v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~- 161 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLA--VSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK- 161 (933)
T ss_pred CCccceeeeeeccceEEE--EecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence 755444433334444444 4555667776 778888988 66677888899999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCC------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccccc
Q 015198 241 IRIFNTVDGTRLQEVRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLN 314 (411)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (411)
|++||+.++.+..++.+-. ....+..++|+|+|..|+..+.|+.|++|+....+...++...
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------ 229 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------ 229 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------
Confidence 9999999988776665311 1335678999999888999999999999999998765322222
Q ss_pred CCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
......++++|+|+ ..|++++.||.|.||+.+
T Consensus 230 ------------------------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 230 ------------------------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ------------------------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 11123678999999 556666779999999999
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=153.14 Aligned_cols=249 Identities=10% Similarity=0.069 Sum_probs=179.7
Q ss_pred cccCCCCCCeEEEEEcCCC--CEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY 111 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g--~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~ 111 (411)
+...-+.++|++++|+|.. +++|+|. .|+|-+||+.+.++ .-...+..|...|..+.|+|. ...+.+.+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD--- 256 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD--- 256 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC---
Confidence 3345689999999999975 5788888 99999999953221 112224588888999999984 4566667776
Q ss_pred CCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCcee-eEEEeccCCCcceEEEccCC
Q 015198 112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIETLANLRGLCCLSHHS 184 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (411)
|+|++-|++.+.....+. ....+..+.|+.+...+. .=|...+||+++++. ...+..|... +..++.+|
T Consensus 257 --GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK--I~sv~~NP 332 (498)
T KOG4328|consen 257 --GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK--ITSVALNP 332 (498)
T ss_pred --ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc--cceeecCC
Confidence 999999988875433333 244566677776655444 335889999987654 5566677764 44555555
Q ss_pred CceEEEEecCCCCeEEEEEcCC---c--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC----CCceEEEE
Q 015198 185 STSVLACPGLQRGQVRIEHFGL---N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV----DGTRLQEV 255 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i~~~~~---~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~----~~~~~~~~ 255 (411)
-..+++++++.|++.+||+.+. + +......|...|.+..|||.+-.|++.+.|.. |+|||.. .-.++.++
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence 5556666788999999998764 2 23455689999999999999888999999999 9999973 33444444
Q ss_pred eCCCCCc---ceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 256 RRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 256 ~~~~~~~---~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.-....+ ......|.|+..++++|-.-..|-|+|-..++
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 4111110 33456899999999999999999999977765
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=153.99 Aligned_cols=232 Identities=15% Similarity=0.171 Sum_probs=166.3
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEe-e------------------cCCCCEEEEEEeccCC-eEEEEecCCCCCCCCC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRR-D------------------LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPT 114 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~ 114 (411)
|+++|+|+ +..|.|||++-...++.. . ..+|...+..+.|..+ ..+|++|+.| .
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD-----~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD-----K 266 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC-----c
Confidence 67999999 999999998632111100 0 1235555667777765 4688999988 9
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee-EEEeccCCCcceEEEccCCCceE
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
+|++||+.++++...+. |...|.++.|+|....+. .|++|.+.|.+..... ..++ ....+..+.|.+.....
T Consensus 267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~- 344 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS- 344 (463)
T ss_pred eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee-
Confidence 99999999999999999 899999999999754444 7999999999843222 2222 22334455666655443
Q ss_pred EEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 189 LACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
+.++..||+|+-.+.+ ++++..+++|.++|.+|++++.- .+|++++.|+. |++|++..............-+...
T Consensus 345 -f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 345 -FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred -EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCccccccccccccee
Confidence 3456799999995544 37899999999999999998754 47899999999 9999986544322111111123466
Q ss_pred EEEeCCCCC-EEEEEeCCCcEEEEEccccccC
Q 015198 266 SIALSPNVQ-WLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 266 ~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
|.++.|+-. +|+.|+..+.++|||+-+....
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 777777654 5777888888999999887643
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=8.3e-19 Score=148.24 Aligned_cols=244 Identities=11% Similarity=0.119 Sum_probs=191.0
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecC------C--------Ccc------------------------eE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE------P--------FKE------------------------TF 79 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~------~--------~~~------------------------~~ 79 (411)
...||.+.|++++|++.+.++++++ |++-.||... . .+. +.
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 4579999999999999999999999 9999999731 0 000 00
Q ss_pred EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEE
Q 015198 80 RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIY 155 (411)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~ 155 (411)
...|.+|...+.+..|-..+..+++++.| .+..+||+++++.+..+. |....+.++-+|..++++ .|.+.+
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 11234566667777788889999999998 999999999999999998 999999999999999888 799999
Q ss_pred EEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEE
Q 015198 156 VYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLA 232 (411)
Q Consensus 156 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~ 232 (411)
+||++. -..+..|.+|...+....|..+. + + ++|+.|.+|++|+... .++..+. ...+++.++++..+..|+
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~-v-VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDD--R-V-VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA 414 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCC--c-e-eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence 999974 35667889998866665555543 2 3 3689999999998765 3445544 467889999998888888
Q ss_pred EEcCCCeEEEEEECCCCceEEEEe---CCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198 233 TASTRGTLIRIFNTVDGTRLQEVR---RGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 233 s~s~dg~~I~vwd~~~~~~~~~~~---~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~ 294 (411)
.--.+.. |++||++ |..+..+. ...|...|.|++|..+.. -|++++.|..+.=|++..+.
T Consensus 415 iPhDNRq-vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 415 IPHDNRQ-VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eccCCce-EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8888888 9999985 44443433 222777899999986543 47899999999999998764
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=3.4e-18 Score=157.53 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=206.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
.|+.++|-|||..|+.+.+..+.|||.+.+... ..+++|...+.+++|+.+|..+++|+.| ..|.+|. ..-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCc-----eeEEEec-cccc
Confidence 899999999999999999999999999875543 3466999999999999999999999998 9999999 4455
Q ss_pred EEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198 126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (411)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 203 (411)
-+..+.|...|.|+.|+|-...++ .=...-+|........ .+.....+++.+|..||.+++. |-.+|+|.|-+
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylal-G~~nGTIsiRN 160 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLAL-GMFNGTISIRN 160 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEE-eccCceEEeec
Confidence 566778999999999999887776 4455667876543222 2233346788889999999987 77899999977
Q ss_pred cCCcceEEEe---ccccceeEEEecCCC-----CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198 204 FGLNMIKLIN---AHDSHIACFTLTLDG-----LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275 (411)
Q Consensus 204 ~~~~~~~~~~---~~~~~i~~l~~sp~g-----~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 275 (411)
..+++...+. +.+.+|.+++|+|.. ..+++.....+ +.+|.+ +|+.+..-+. -.-...|+++.++|.+
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCcE
Confidence 7776665554 468899999999864 47888888888 888887 5665543332 2235678999999999
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198 276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (411)
+..|+.|+.+++|--+.-. .. . +
T Consensus 237 ~LiGGsdk~L~~fTR~Gvr-LG------------------------------------------T--------------v 259 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDGVR-LG------------------------------------------T--------------V 259 (1081)
T ss_pred EEEccCCCceEEEeecCeE-Ee------------------------------------------e--------------c
Confidence 9999999999998543221 11 0 0
Q ss_pred EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
--.+.....++..|+ +.+++||.||.+-.|++-.
T Consensus 260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 000123456778888 7899999999999998763
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.4e-17 Score=149.54 Aligned_cols=325 Identities=14% Similarity=0.123 Sum_probs=220.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
+....|.+++|++.++++-+|.+|.|.-||+.+.+..+... .....+.+++-+|....++.+.+| |.+..++.
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg~IWsiai~p~~~~l~Igcdd-----Gvl~~~s~ 139 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID--SNGGAIWSIAINPENTILAIGCDD-----GVLYDFSI 139 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec--CCCcceeEEEeCCccceEEeecCC-----ceEEEEec
Confidence 44568999999977777766669999999999988777765 567778888888888888887777 98888887
Q ss_pred CCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc-----C-CCcceEEEccCCCceEE
Q 015198 122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL-----A-NLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 122 ~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l 189 (411)
..++...... .++.|.++.|+|++..++ .||.|++||...+..++..... . .+.-+.++.+-.++ .|
T Consensus 140 ~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI 218 (691)
T KOG2048|consen 140 GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI 218 (691)
T ss_pred CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence 7777665543 468999999999999666 7999999999988777633221 1 22233333343343 34
Q ss_pred EEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcceEE
Q 015198 190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYS 266 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~ 266 (411)
+ +|...|+|.+|+.. +..++.+..|.+.|.+++.++++..+++++.|+. |.-|...+++. +.......|...|.+
T Consensus 219 ~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~-ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 219 A-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK-IIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred E-EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc-eEEEEecCCccceeeeccccCCccccee
Confidence 4 58899999998865 5677888999999999999999999999999999 77776655533 222233337778999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC-------CCCCCCCCcccccc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP-------STGANPGSSLSFMR 339 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 339 (411)
++..++ .|++|+.|..+.+-....-+..... +-+++..+.-..+.+.. .-+...++. +
T Consensus 297 ~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~---------~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl----G 361 (691)
T KOG2048|consen 297 MAVIEN--ALISGGRDFTLAICSSREFKNMDHR---------QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL----G 361 (691)
T ss_pred eeeecc--eEEecceeeEEEEccccccCchhhh---------ccccccccceeecCccceEEEEeccccccceec----c
Confidence 999876 8999999999988777663322211 11122221111111111 000011110 0
Q ss_pred cccCcccccccceEEEEeCC-CceEEEEEccCCEEEEEEeCCcEEEEEEecCC
Q 015198 340 GVLPKYFSSEWSFAQFHIPE-VTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVH 391 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~ 391 (411)
+..+.-=-.-.....+.+++ .....++.+|++++++.+.=..+.+|.+.++.
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP 414 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence 00000000011233444444 45667888999999999998899999998854
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=5.3e-18 Score=155.59 Aligned_cols=280 Identities=14% Similarity=0.111 Sum_probs=191.5
Q ss_pred EEEEcCC---CCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 49 SVSWNQD---YGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 49 ~l~~s~~---g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
+..|++. ...|+.+. +|.|.++|....... .......|...+.++.|.|....|++++.| .++++||
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wd 128 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD-----STIRPWD 128 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC-----ceeeeee
Confidence 3556542 34678888 999999998743222 012234788899999999988889998887 9999999
Q ss_pred CCCCcEEEE---EeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce--e------------------e-------E
Q 015198 121 DHQSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--L------------------L-------H 166 (411)
Q Consensus 121 ~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~--~------------------~-------~ 166 (411)
+++++++.. +.|...|.+++|.+....++ .||.|.|||++-.. . . +
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999988776 34999999999999887766 79999999985321 0 0 0
Q ss_pred EEeccCCCcc-eEEEccCCCceEEEEecCCCCeEEEEEcCCcc---------eEEEecc---ccceeEEEecCCCCEEEE
Q 015198 167 QIETLANLRG-LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---------IKLINAH---DSHIACFTLTLDGLLLAT 233 (411)
Q Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---------~~~~~~~---~~~i~~l~~sp~g~~l~s 233 (411)
....+...+. .+......|...||.+|..|+.|++||++... ...+..| .-.+.++.....|.+|++
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 0011111111 11122333456788878779999999987522 1122233 345778888888999888
Q ss_pred EcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccc
Q 015198 234 ASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTE 311 (411)
Q Consensus 234 ~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 311 (411)
.+.|+. |++|++.+.. .+..+.+.....--..-..+||+.+|++|+.|...++|.+.+.+..-.+
T Consensus 289 sCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------------ 355 (720)
T KOG0321|consen 289 SCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------------ 355 (720)
T ss_pred EecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh------------
Confidence 888999 9999997643 3333433211111223356899999999999999999999988743210
Q ss_pred cccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198 312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~ 389 (411)
+++ +...+..++|.+. ..+++++.|-.+.||.+..
T Consensus 356 -------------------------l~G------------------ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 356 -------------------------LLG------------------HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -------------------------hhC------------------cceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 111 1123556778665 7888888899999999953
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=6.7e-17 Score=152.63 Aligned_cols=304 Identities=13% Similarity=0.153 Sum_probs=213.2
Q ss_pred eEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 47 LISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 47 V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
|+++. +|. =+.++.|+ +|.++|||+.+.+.++.. +.....|+++..+|-..+++.|-.+ |+|.+++++.
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f--~~~~s~IT~ieqsPaLDVVaiG~~~-----G~ViifNlK~ 233 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF--QEFFSRITAIEQSPALDVVAIGLEN-----GTVIIFNLKF 233 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEe--cccccceeEeccCCcceEEEEeccC-----ceEEEEEccc
Confidence 77764 565 24577777 999999999997776664 4777899999999999999988888 9999999999
Q ss_pred CcEEEEEeec-CceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe-ccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 124 SRCIGEFAFR-SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 124 ~~~~~~~~~~-~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
++.+.++++. +.|++++|..||..+. ..|.+.+||++..+.+..+. .|...+....+. +....++. .+.|+
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl--~~epVl~t-a~~Dn 310 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL--PGEPVLVT-AGADN 310 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec--CCCceEee-ccCCC
Confidence 9999999985 9999999999998766 56899999998877776664 443322222221 11122222 22344
Q ss_pred eEEEEEcC------------------------------------------------------------------------
Q 015198 198 QVRIEHFG------------------------------------------------------------------------ 205 (411)
Q Consensus 198 ~i~i~~~~------------------------------------------------------------------------ 205 (411)
.+++|..+
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 44443222
Q ss_pred ----------------------------------------Ccce-E-EE-----eccccceeEEEecCCCCEEEEEcCCC
Q 015198 206 ----------------------------------------LNMI-K-LI-----NAHDSHIACFTLTLDGLLLATASTRG 238 (411)
Q Consensus 206 ----------------------------------------~~~~-~-~~-----~~~~~~i~~l~~sp~g~~l~s~s~dg 238 (411)
.+.. . .+ +.....+++++.++.|++.+.|+..|
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 1111 0 00 11225688899999999999999999
Q ss_pred eEEEEEECCCCceEEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198 239 TLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS 317 (411)
Q Consensus 239 ~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
. |.+|++.+|-....+. ...|..+|++++...-++.+++++.+|.+++||+.++.....+...
T Consensus 471 ~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--------------- 534 (910)
T KOG1539|consen 471 T-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--------------- 534 (910)
T ss_pred e-EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---------------
Confidence 9 9999999998888883 2338899999999999999999999999999999988744322211
Q ss_pred CCccccCCCCCCCCCCccccccc----------ccCcccccc--cceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEE
Q 015198 318 SFDTLISPSTGANPGSSLSFMRG----------VLPKYFSSE--WSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYR 384 (411)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~ 384 (411)
. ......+... +...+++.. +....|.-+.+.....+||++ .-|++++.|+++++
T Consensus 535 -----------~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 535 -----------S-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred -----------C-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 0 0111111100 000111111 122234444566778999999 77999999999999
Q ss_pred EEEec
Q 015198 385 CSFDP 389 (411)
Q Consensus 385 ~~~~~ 389 (411)
|.+..
T Consensus 603 wDlpt 607 (910)
T KOG1539|consen 603 WDLPT 607 (910)
T ss_pred EeccC
Confidence 99986
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=148.77 Aligned_cols=205 Identities=15% Similarity=0.182 Sum_probs=155.9
Q ss_pred ecCceeEEEEcCCe--EEEE---EcCeEEEEEcC----------------CceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 132 FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFV----------------DLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 132 ~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
|.+.++.+...+-+ .+.+ ..|.|+||++. ..+.+.++.+|...-..++|++...+.++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll- 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL- 228 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc-
Confidence 55666666655543 2333 68999999983 13456677777765566666665555444
Q ss_pred EecCCCCeEEEEEcCCcc----eEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 191 CPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
+|.--+.|++|...... ...+.+|...|..++|||.. ..|++++-||. |+|||++.+.....+....|.+.|+
T Consensus 229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence 57667788888765422 23466799999999999965 48899999999 9999999984332222234888999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcc
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY 345 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (411)
-|.|+.+..+||+|+.||+++|||++.-+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~------------------------------------------------- 337 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG------------------------------------------------- 337 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCC-------------------------------------------------
Confidence 9999998889999999999999999986632
Q ss_pred cccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEecCCC
Q 015198 346 FSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPVHG 392 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~~~~ 392 (411)
.++++|+.+...++.+.|+|+ ..|+++|.|..+-+|.|..+..
T Consensus 338 ----~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 338 ----QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ----CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 236789999889999999997 8899999999999999987644
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.5e-19 Score=174.47 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=189.7
Q ss_pred CCCCeEEEEEcCCCCE----EEEEe-CCcEEEEecCCC----cceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCC
Q 015198 43 DEIELISVSWNQDYGC----FAAGT-SCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYP 112 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~----la~g~-dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~ 112 (411)
...+.+.|+|.+.|.. ||.|. ||.|.+||.... ..........|...|..+.|++.. .++++|+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~---- 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD---- 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC----
Confidence 3457799999998876 66666 999999998752 112222345788889999999865 599999988
Q ss_pred CCeEEEEECCCCcEEEEE---eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-
Q 015198 113 PTKVIIWDDHQSRCIGEF---AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS- 184 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (411)
|.|.|||+.+-+.-... .....|.+++|+..-..+. .+|.+.|||++..+.+-.+..+.....+..+.|+|
T Consensus 139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 99999998875444333 2578899999998766555 57899999999888777776655543344444544
Q ss_pred -CceEEEEecCCCC--eEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198 185 -STSVLACPGLQRG--QVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (411)
Q Consensus 185 -~~~~l~~~g~~dg--~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (411)
-.+++++++ +|+ .|.+|+.+. .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+..
T Consensus 218 ~aTql~~As~-dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~- 294 (1049)
T KOG0307|consen 218 HATQLLVASG-DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA- 294 (1049)
T ss_pred CceeeeeecC-CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence 445555544 333 456698664 5778889999999999999877 79999999999 99999999999999987
Q ss_pred CCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEcccccc
Q 015198 259 VDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 259 ~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~ 295 (411)
....+..+.|+|... .+++++-||.|.|+.+.....
T Consensus 295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 567899999999766 788999999999999988763
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.5e-17 Score=139.99 Aligned_cols=245 Identities=13% Similarity=0.187 Sum_probs=172.8
Q ss_pred ccCCCCCCeEEEEEcC-----CCCEEEEEeCCcEEEEecCCCc--ceEEeecC-CCCEEEEEEec--cCC--eEEEEecC
Q 015198 39 FSDVDEIELISVSWNQ-----DYGCFAAGTSCGFRIYNCEPFK--ETFRRDLK-SGGFRIVEMLF--RCN--ILALVGAG 106 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~-----~g~~la~g~dg~i~iw~~~~~~--~~~~~~~~-~~~~~~~~~~~--~~~--~~~l~s~~ 106 (411)
..++|..+|..++|++ +-+.+|+.+.+.+.||+..... ..+..... .+......+.| ..+ .-+++.++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 4678999999999995 2346677778899999987544 22222221 13333333333 322 34556555
Q ss_pred CCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe---ccCCCcceE
Q 015198 107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE---TLANLRGLC 178 (411)
Q Consensus 107 ~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~ 178 (411)
.- |.|+|.|+.++++...+. |...|+.+.+.|+...++ .|..|++|++++..++..+. +|.. .++
T Consensus 113 ~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd--eVL 185 (385)
T KOG1034|consen 113 YL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD--EVL 185 (385)
T ss_pred ce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--cEE
Confidence 65 999999999999999988 999999999999874333 79999999999999998884 4544 677
Q ss_pred EEccCCCceEEEEecCCCCeEEEEEcCCcce-----------------------E------EEeccccceeEEEecCCCC
Q 015198 179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-----------------------K------LINAHDSHIACFTLTLDGL 229 (411)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-----------------------~------~~~~~~~~i~~l~~sp~g~ 229 (411)
++.++.++..|++ ++.|.++++|..+.+.. . ....|...|-|+.| -|.
T Consensus 186 SvD~~~~gd~i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd 262 (385)
T KOG1034|consen 186 SVDFSLDGDRIAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGD 262 (385)
T ss_pred EEEEcCCCCeeec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhh
Confidence 7778888888876 55899999999873110 0 11235566666666 367
Q ss_pred EEEEEcCCCeEEEEEEC-CCCc-------------eEEEEeCCCCCcceEEEE--eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 230 LLATASTRGTLIRIFNT-VDGT-------------RLQEVRRGVDRAEIYSIA--LSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 230 ~l~s~s~dg~~I~vwd~-~~~~-------------~~~~~~~~~~~~~v~~l~--~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
++++=+-++. |..|.. +-++ .+.++.- ....|+-+. |.|-+++||.|...|.|++||++..
T Consensus 263 ~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 8888888888 999976 2111 1223332 334555554 4566789999999999999999988
Q ss_pred ccC
Q 015198 294 VVG 296 (411)
Q Consensus 294 ~~~ 296 (411)
+..
T Consensus 340 ep~ 342 (385)
T KOG1034|consen 340 EPP 342 (385)
T ss_pred CCc
Confidence 753
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=6.5e-18 Score=139.43 Aligned_cols=238 Identities=14% Similarity=0.152 Sum_probs=164.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.+.+|.+.|+++.|-.+++ |.+|. .|.|.+|.+.+........+ .+...+..+..-++ ..+.+-+.| ..+.
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd-----~~L~ 80 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRD-----PLLI 80 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCC-----ceEE
Confidence 3558999999999988776 77777 99999999988665554443 45666777766666 445565666 8888
Q ss_pred EEECCCCcEEEEEe------------------------------------------------------ecCceeEEEEcC
Q 015198 118 IWDDHQSRCIGEFA------------------------------------------------------FRSDVRSVKLSR 143 (411)
Q Consensus 118 vwd~~~~~~~~~~~------------------------------------------------------~~~~i~~~~~~~ 143 (411)
+|++.-+..+..-. ..+.+.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 88865432211100 002233333221
Q ss_pred -CeEE-EE----EcCeEEEEEcCCceee----------EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc
Q 015198 144 -DRIV-VV----LEHKIYVYSFVDLKLL----------HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN 207 (411)
Q Consensus 144 -~~~~-~~----~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~ 207 (411)
++.. ++ .+|.+.+||+.++..+ ..+..|..++..+.++..-++.. +|+.+..+..|..+..
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHS 237 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc---CCCccccceeeeeccc
Confidence 1222 22 6899999999887333 33344555555555554333211 3555556666655432
Q ss_pred -----ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 208 -----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 208 -----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
....+...+-.|..+.+-||++.+|+++.|+. ||||..++..++..++- |.+.|++++|+|+..++|+++.|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCC
Confidence 12233344566888999999999999999999 99999999999999988 88999999999999999999999
Q ss_pred CcEEEEEc
Q 015198 283 GTVHIFSL 290 (411)
Q Consensus 283 g~I~vwd~ 290 (411)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999997
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6e-19 Score=171.90 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=195.2
Q ss_pred EEEEEcCCCC-EEEEEe-----------CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeE----EEEecCC
Q 015198 48 ISVSWNQDYG-CFAAGT-----------SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL----ALVGAGD 107 (411)
Q Consensus 48 ~~l~~s~~g~-~la~g~-----------dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~l~s~~~ 107 (411)
-.++|+|++. ++|+|. +.++.||.++..... ....+ ........+.|.+.+. ++++|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 3578999886 566554 234456655422111 11111 3344566777776543 4888888
Q ss_pred CCCCCCCeEEEEECCC---CcE---EEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198 108 NSQYPPTKVIIWDDHQ---SRC---IGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRG 176 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~---~~~---~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 176 (411)
| |.|.+||... +.. +.... |.+.|..+.|++... +++ .||.|.|||+...+.-...........
T Consensus 89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 8 9999999654 322 33333 999999999999766 666 789999999987554444433333446
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccc--cceeEEEecCCCC-EEEEEcCCCe--EEEEEECCCC-
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHD--SHIACFTLTLDGL-LLATASTRGT--LIRIFNTVDG- 249 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~--~~i~~l~~sp~g~-~l~s~s~dg~--~I~vwd~~~~- 249 (411)
+.+++|+.+...++++++.+|.+.|||.+.+ .+..+..+. ..+..++|+|+.. .|++++.|.. .|.+||++.-
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 7888998887777788889999999998765 444454443 3577899999874 5666665542 4999998865
Q ss_pred ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCC
Q 015198 250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG 328 (411)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (411)
..++++.. |...|.++.|++.+ ++|++++.|+.|.+|+.++++...++...
T Consensus 244 sP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-------------------------- 295 (1049)
T KOG0307|consen 244 SPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-------------------------- 295 (1049)
T ss_pred Cchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--------------------------
Confidence 45666766 88899999999866 88999999999999999998865322221
Q ss_pred CCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198 329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~ 389 (411)
..-...+.|.+. ..+.+++-||.|-||++..
T Consensus 296 ------------------------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 296 ------------------------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ------------------------------CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 122345778887 5677777799999999985
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=8.1e-18 Score=154.37 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=175.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK 115 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~ 115 (411)
.....|...|..+.|.|...+|++++ |.++++||++..+..-...+-+|...+.+++|.+ +-..+++|+.| |.
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD-----g~ 168 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD-----GE 168 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC-----Cc
Confidence 34567999999999999666778887 9999999999765443323348888899999997 45788899998 99
Q ss_pred EEEEECCCCc--------------------EEEEE--------eecCceeE---EEEcCCeEEEE----EcCeEEEEEcC
Q 015198 116 VIIWDDHQSR--------------------CIGEF--------AFRSDVRS---VKLSRDRIVVV----LEHKIYVYSFV 160 (411)
Q Consensus 116 i~vwd~~~~~--------------------~~~~~--------~~~~~i~~---~~~~~~~~~~~----~dg~i~iwd~~ 160 (411)
|.|||++-.. ....+ .+...|.+ +.+..|...++ .|+.|++||++
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 9999965322 00000 02233444 44455555555 59999999997
Q ss_pred CceeeEEE------ecc---CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccc--eeEEEecC
Q 015198 161 DLKLLHQI------ETL---ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSH--IACFTLTL 226 (411)
Q Consensus 161 ~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~--i~~l~~sp 226 (411)
........ ..+ ......+++..+..|.+|.+.+ .|+.|++|+.... ++..+.++... -..-..+|
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp 327 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP 327 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence 65432221 111 1234677888888788887755 6999999987753 33333333211 11224689
Q ss_pred CCCEEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCC
Q 015198 227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
++.+|++|+.|.. .++|.+.+.+.-- .+.+ |.-.|++++|.|.. .-++++++|..++||++..+-+..
T Consensus 328 d~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 328 DDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred CCceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 9999999999999 9999998876533 3444 77899999998743 236777999999999997765443
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=6.9e-18 Score=150.56 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=175.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
-.|++......|+++|+ .+.|+|||+. .+...+.+++|...+..+.|.....++++++.. |.|.|..+.++.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~ 154 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQ 154 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCc
Confidence 34555555567899988 9999999998 444555577899999999999999999999988 999999999998
Q ss_pred EEEEEee--cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEE-eccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198 126 CIGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 126 ~~~~~~~--~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
...++.+ ...|.-+.|++..+.+. .+|.|.+||+.....+..+ +.|..+...+||++... .+|+..| .|..
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG-~Dkk 232 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-ALLVSVG-YDKK 232 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc-ceEEEec-ccce
Confidence 8888885 45677899999877766 7899999999877666554 66788778888888765 3455545 8999
Q ss_pred EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCC
Q 015198 199 VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNV 273 (411)
Q Consensus 199 i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg 273 (411)
|.+++...+..........+...++|.++|.+|++|+..|. |..||++..+ ++..+.. |...|++++|-|..
T Consensus 233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence 99988887666555667889999999999999999999999 9999998654 5666666 78889999998754
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.1e-17 Score=138.71 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=152.6
Q ss_pred EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee
Q 015198 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~ 165 (411)
..++.|++.|.+++.|..+ |.|.|||+.+...-+.+. |..+|.+++|+++|+.++ .|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 6788899999999999988 999999999988777777 999999999999999988 7999999999999999
Q ss_pred EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec-c----ccceeEEEecCCCCEEEEEcCCCeE
Q 015198 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-H----DSHIACFTLTLDGLLLATASTRGTL 240 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~----~~~i~~l~~sp~g~~l~s~s~dg~~ 240 (411)
+.+.- ..++..+.+.+..++..+++-- +..-.+-.........+.. . +..-.+..|.+.|+++++|...|.
T Consensus 101 ~rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk- 176 (405)
T KOG1273|consen 101 KRIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK- 176 (405)
T ss_pred eEEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence 88875 4567888888888877776542 2222221111111111111 1 111223458899999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
+.++|..+.+++..++.. ....|..+.++..|++|+.-+.|..|+.|+++.
T Consensus 177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 999999999999888863 236899999999999999999999999999874
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=9e-17 Score=148.88 Aligned_cols=246 Identities=12% Similarity=0.146 Sum_probs=183.5
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe--ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT 114 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~ 114 (411)
....||.+.|..++|+|.|++|++.+ |.+-|||-.-..+..+.. .-+-|.-...++.+-+....+++|.++ .
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-----K 429 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE-----K 429 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc-----e
Confidence 34789999999999999999999998 999999875422222211 012455556666676656667777766 7
Q ss_pred eEEEEECCC-------------------------------------------CcE----E--------------------
Q 015198 115 KVIIWDDHQ-------------------------------------------SRC----I-------------------- 127 (411)
Q Consensus 115 ~i~vwd~~~-------------------------------------------~~~----~-------------------- 127 (411)
.+|+++... |.. .
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 777776321 000 0
Q ss_pred ----------EEEeecCceeEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 128 ----------GEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 128 ----------~~~~~~~~i~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+.+.|.-.|.+++.+|++++++ ....|++|+..+-...+.+..|.- ++..+.+++++++|
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL--TVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL--TVTRLAFSPDGRYL 587 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce--EEEEEEECCCCcEE
Confidence 0011345799999999999998 356799999988888888887765 77788888888898
Q ss_pred EEecCCCCeEEEEEcCCcc-----eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeCCCCCc
Q 015198 190 ACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVDRA 262 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~~~ 262 (411)
++. +.|.++.+|...... ....+.|..-|.+..|+|++.+++|+|.|.. |++|..... +.+..+....+..
T Consensus 588 Lsv-sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~~ 665 (764)
T KOG1063|consen 588 LSV-SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFSL 665 (764)
T ss_pred EEe-ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccCC
Confidence 875 589999998765422 2336789999999999999999999999999 999998877 5554433333677
Q ss_pred ceEEEEeCC-----CCCEEEEEeCCCcEEEEEccc
Q 015198 263 EIYSIALSP-----NVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 263 ~v~~l~~sp-----dg~~l~s~s~dg~I~vwd~~~ 292 (411)
.|+.++|.| .+..+++|-..|.|.+|....
T Consensus 666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred ceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 899999986 233788999999999999763
No 158
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=3e-18 Score=160.39 Aligned_cols=239 Identities=14% Similarity=0.144 Sum_probs=179.5
Q ss_pred eEEEEEcC-CCCEEEEEe-CCcEEEEecCCC-cceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECC
Q 015198 47 LISVSWNQ-DYGCFAAGT-SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 47 V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
+..|+|+. +.++||+++ .|.|.+||+... ...+...|..|...+..+.|++ .-.++++|+.| |+|++||++
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~DlR 164 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD-----GTVKCWDLR 164 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC-----ceEEEEeee
Confidence 45567764 367899999 999999999862 2222233568888999999987 45788999998 999999999
Q ss_pred CCcEEEEEe-ecCceeEEEEcCCe-EEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 123 QSRCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 123 ~~~~~~~~~-~~~~i~~~~~~~~~-~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
..+...++. ....|.+++|+|.. ..++ ..|.+.+||++.. ++...+..|.+++ .++.++|++.+||+ |+.|
T Consensus 165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV--~c~nwhPnr~~lAT-GGRD 241 (839)
T KOG0269|consen 165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV--LCLNWHPNREWLAT-GGRD 241 (839)
T ss_pred cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce--EEEeecCCCceeee-cCCC
Confidence 998888877 67899999999843 2333 6799999999764 5667778888855 45555566678875 6699
Q ss_pred CeEEEEEcCCcceE-EEe-ccccceeEEEecCCCCE-EEEEc--CCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeC
Q 015198 197 GQVRIEHFGLNMIK-LIN-AHDSHIACFTLTLDGLL-LATAS--TRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 197 g~i~i~~~~~~~~~-~~~-~~~~~i~~l~~sp~g~~-l~s~s--~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~s 270 (411)
+.|+||+.+..... ... ....++.+++|-|...+ ||+++ .|-. |+|||++-.- +..++.. |...++.++|.
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~W~ 318 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIAWD 318 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCccccceecc
Confidence 99999998853322 222 23578999999998764 56554 3566 9999997653 3456666 88899999996
Q ss_pred C-CCCEEEEEeCCCcEEEEEccccccC
Q 015198 271 P-NVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 271 p-dg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
. |-..|.+++.||+|..-.+++....
T Consensus 319 ~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred CCCceeeEeecCccHHHHhhhhcccCh
Confidence 5 4567889999999887777766543
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=9.1e-17 Score=140.22 Aligned_cols=251 Identities=16% Similarity=0.127 Sum_probs=178.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecC--------C------CcceEEeecCCCCEEEEEEeccCCeEEE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE--------P------FKETFRRDLKSGGFRIVEMLFRCNILAL 102 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (411)
..+..|...|+++.|+|+|++||+|+ +|.|.+|... + ...+..+.+.+|...+..++|++++.++
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 45788999999999999999999999 8999999876 2 1123344456788899999999999999
Q ss_pred EecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe---------
Q 015198 103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE--------- 169 (411)
Q Consensus 103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~--------- 169 (411)
++++-| +.+++||+..|+.+..+. |...+..++|.|-+++++ .|...+.+.+...+.++...
T Consensus 139 ~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 139 VSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred eeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 999998 999999999999999887 999999999999999888 46656666554332222111
Q ss_pred ------------ccCCCcceEEEccCCCceEEEEecC---CCCeE--EE-EEcCC----cceEEEeccccceeEEEecC-
Q 015198 170 ------------TLANLRGLCCLSHHSSTSVLACPGL---QRGQV--RI-EHFGL----NMIKLINAHDSHIACFTLTL- 226 (411)
Q Consensus 170 ------------~~~~~~~~~~~~~~~~~~~l~~~g~---~dg~i--~i-~~~~~----~~~~~~~~~~~~i~~l~~sp- 226 (411)
...-+.....+++.|+|.+++...+ ..+.+ .. +.... ++...+.....+...+.|+|
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV 293 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV 293 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence 1111112334566778877765321 11122 11 22222 33344444445555555544
Q ss_pred -----------------CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 227 -----------------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 227 -----------------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
-+..+|.++.+ . |+|||.++.+++..+..- |-..|+.++|++||..|+..+.||...+--
T Consensus 294 y~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 294 YYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred EEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEE
Confidence 23345666655 4 999999998888766544 778999999999999999999999888887
Q ss_pred ccccccC
Q 015198 290 LRVRVVG 296 (411)
Q Consensus 290 ~~~~~~~ 296 (411)
++..+..
T Consensus 371 fe~~elg 377 (434)
T KOG1009|consen 371 FEPWELG 377 (434)
T ss_pred Ecchhcc
Confidence 7776544
No 160
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.1e-16 Score=137.38 Aligned_cols=308 Identities=12% Similarity=0.052 Sum_probs=207.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-----ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
....+|.+.|+++.|+.++++|++|+ |..+++|+++..- +.....-+.|...|.++.|......+.+|+.+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~--- 126 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW--- 126 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc---
Confidence 34678999999999999999999999 9999999987311 11112123566889999999999999999988
Q ss_pred CCCeEEEEECCCCcEEEEEeec---CceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCC
Q 015198 112 PPTKVIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHS 184 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 184 (411)
++|.+.|+++.+.+..+.+. +.|+.+..+|....++ .++.|.+||.+... ....+-....+......-++|
T Consensus 127 --~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 127 --GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred --ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999999988854 5999999999766665 78999999997644 333232222223344445555
Q ss_pred CceEEEEecCCCCeEEEEEcCCcceEE--------EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEE
Q 015198 185 STSVLACPGLQRGQVRIEHFGLNMIKL--------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV 255 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~--------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~ 255 (411)
....|+.+.+..+-+-+|+........ +......-..+.|+|+|..|++--.... -.+||+.+..+ +..+
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEec
Confidence 555566667788889999887643211 1111223457889999998887766666 66888876543 2233
Q ss_pred e----CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198 256 R----RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP 331 (411)
Q Consensus 256 ~----~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (411)
. +......+.+++|..|- .+++|+.+-.|++|.+.......
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~---------------------------------- 328 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSY---------------------------------- 328 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcccc----------------------------------
Confidence 2 11112357788887664 48999999999999997644221
Q ss_pred CCccccccc---ccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198 332 GSSLSFMRG---VLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD 388 (411)
Q Consensus 332 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~ 388 (411)
.+..+++ .+|.-+--+..+.-++-+...+.-+.|+++ ..|+..|-+..+.+|+-.
T Consensus 329 --G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 329 --GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred --CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1111221 122211112233445555566777889998 555555668999998643
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=4.3e-17 Score=150.40 Aligned_cols=241 Identities=17% Similarity=0.207 Sum_probs=186.1
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
.+++.+.+|.+.|+|++|+.||+++|+|+ |..|.+|+-.- +..++. .|...+.+|.|+|-...+++++-
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY---SH~D~IQCMsFNP~~h~LasCsL------ 113 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY---SHNDAIQCMSFNPITHQLASCSL------ 113 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee---ccCCeeeEeecCchHHHhhhcch------
Confidence 35567899999999999999999999999 99999998653 334443 68889999999999999999887
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec---cCCCcceEEEccCCC--
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSS-- 185 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 185 (411)
...-+|.... +.+...+....+.+.+|..||++++ .+|+|.+-+ .+++..-.+.. ...++..++++++..
T Consensus 114 sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 114 SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 6778898443 3444455667889999999999999 799999987 44444444433 445566666666531
Q ss_pred -ceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198 186 -TSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI 264 (411)
Q Consensus 186 -~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v 264 (411)
...+++ .....++.++..+++.+..-+.-.-...|+.+-++|.++..|+.|+. +.+|- +.|-.+.++.. ....|
T Consensus 192 ~~di~aV-~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WI 266 (1081)
T KOG1538|consen 192 RNDILAV-ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWI 266 (1081)
T ss_pred ccceEEE-EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeE
Confidence 123333 33555666666666655544444556678999999999999999999 99995 68888878766 56699
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
+.++..|++++++.|+.||+|.-|++-.
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9999999999999999999999998754
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=3e-16 Score=131.26 Aligned_cols=302 Identities=12% Similarity=0.161 Sum_probs=196.1
Q ss_pred CCEEEEEe-----CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCC--CCeEEEEECCCC--
Q 015198 56 YGCFAAGT-----SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYP--PTKVIIWDDHQS-- 124 (411)
Q Consensus 56 g~~la~g~-----dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~--d~~i~vwd~~~~-- 124 (411)
.-.|++|. |+.|.+.+++.... +....|..+...+..+.-+| +..+|+++-.+.... -..+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 33555555 78888888775332 33333445666777777776 344555443321100 135789986543
Q ss_pred -------cEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCcee-eEEEec-----cCCCcceEEEccCCCce
Q 015198 125 -------RCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL-LHQIET-----LANLRGLCCLSHHSSTS 187 (411)
Q Consensus 125 -------~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~ 187 (411)
+++..+. +-+.|.|+.|.|++..++ .|..|.+|++..+.. +..+.. +......-.++|+.++.
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 2233333 346899999999988877 799999999976654 333322 22333455678877888
Q ss_pred EEEEecCCCCeEEEEEcCC-cceE-EEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcc
Q 015198 188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAE 263 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~ 263 (411)
.++++ .|+++..|+.+. ++.. .-.+|...|..+.|+|+.+ +|++++.||. |+|||.+.- .+++++.+ |...
T Consensus 186 qv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsHW 260 (370)
T KOG1007|consen 186 QVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSHW 260 (370)
T ss_pred eEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--CceE
Confidence 88776 589999988764 2222 3357888999999999987 6889999999 999999865 46777777 7779
Q ss_pred eEEEEeCCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccccc
Q 015198 264 IYSIALSPN-VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342 (411)
Q Consensus 264 v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (411)
|+++.|+|. .++|++++.|..|.+|....-....++.-+++ .+-..+.........+
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~d------------------ese~e~~dseer~kpL---- 318 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDD------------------ESESEDEDSEERVKPL---- 318 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccc------------------cccCcchhhHHhcccc----
Confidence 999999985 46788999999999998776553332222211 0000000000000111
Q ss_pred CcccccccceEEEEeCCCceEEEEEccC-CE-EEEEEeCCcEEEEEEec
Q 015198 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT-VVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~dg~~~~~~~~~ 389 (411)
+ ...+.++.-.++.++.++|+.- .- ++.-+.||++.|-++..
T Consensus 319 ~-----dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 319 Q-----DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred c-----ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1 1123455666689999999876 43 45556699999988775
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=6.7e-17 Score=148.32 Aligned_cols=98 Identities=21% Similarity=0.345 Sum_probs=86.3
Q ss_pred CCCeEEEEEcCC--------cceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 195 QRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 195 ~dg~i~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
.||.|++|.... .+...++.|...|+++.|+|- ...|++++.|.+ |++||+.+++....+.+ |.+.|.
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqIf 724 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQIF 724 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCcee
Confidence 677888876643 345678899999999999985 358899999999 99999999999989998 889999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
+++|||||+.+|+.+.||+|+||+-++++.
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 999999999999999999999999888764
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=6.3e-16 Score=136.46 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=161.6
Q ss_pred EEEEEcCCCCEEEEEe--CC--cEEEEecCCCcceEEeecCCCCEE----EEEEecc-------CCeEEEEecCCCCCCC
Q 015198 48 ISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFR----IVEMLFR-------CNILALVGAGDNSQYP 112 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~--dg--~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~l~s~~~d~~~~ 112 (411)
-.+..-|+..+++++. ++ .+.+|-.+.....+-. .|..- .+++.|. ..+.+++.|..+
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv---HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd---- 201 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV---HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD---- 201 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE---ecceeccCcchhhhhhhcCCCCCCCcceEEEeccC----
Confidence 4456678788888887 32 2334433332211111 12111 1222222 236788888888
Q ss_pred CCeEEEEECCCCc---EEEEE-------------------eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE
Q 015198 113 PTKVIIWDDHQSR---CIGEF-------------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH 166 (411)
Q Consensus 113 d~~i~vwd~~~~~---~~~~~-------------------~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~ 166 (411)
..|.|||+.-.. +...+ .|...|.++.|+..-+.++ .|.+|++||+.++++..
T Consensus 202 -p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~ 280 (463)
T KOG0270|consen 202 -PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS 280 (463)
T ss_pred -ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence 899999964211 10011 1566778888888765554 79999999999999999
Q ss_pred EEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEE
Q 015198 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIF 244 (411)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vw 244 (411)
.+..|...+..+.|.+. ...++.+|+.|++|.+.+.+ .......-...+.|-.++|.|... .++++..||. |+-+
T Consensus 281 s~~~~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~ 357 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYF 357 (463)
T ss_pred ehhhcCCceeEEEecCC--CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEee
Confidence 99988886665555554 34444579999999995544 222222222457788999998765 5677788999 9999
Q ss_pred ECCCC-ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccC
Q 015198 245 NTVDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 245 d~~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
|++.. +++.++.. |.++|.+|++++.- .+|++++.|+.|++|++...+..
T Consensus 358 D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 358 DIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred ecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 99875 88999988 88999999999754 47889999999999999876643
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.6e-14 Score=135.39 Aligned_cols=246 Identities=18% Similarity=0.297 Sum_probs=186.3
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEEec-cCCeE-EEEecCC-CCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLF-RCNIL-ALVGAGD-NSQYPP 113 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s~~~-d~~~~d 113 (411)
....|...|.++.+.+.+..++.++ ++.+.+|+..... ....... .+...+..+.. .+++. .++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 4568999999999999999999998 9999999998754 2222221 12123333333 66555 4444333 5
Q ss_pred CeEEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE---E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
+.+.+|+... ......+. |...|..+.|+|++..++ . |+.+++|++..++.+..+..|...+..+.+. +++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 211 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS--PDGG 211 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc--CCcc
Confidence 9999999887 66666665 889999999999997665 3 8999999999888888888877755655555 5555
Q ss_pred EEEEecCCCCeEEEEEcCC-cceE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcce
Q 015198 188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEI 264 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v 264 (411)
.++.+++.|+.|++|+... .... .+..|.... ...|++++.++++++.|+. +++|++..... +..+.. |...+
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v 287 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV 287 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence 4444457899999997663 3344 477777775 4489999999999999999 99999987765 444433 67899
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.++.|.|++..+++++.|+.+.+|++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 99999998898888999988999988877644
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2e-15 Score=127.43 Aligned_cols=266 Identities=14% Similarity=0.161 Sum_probs=177.2
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe-ecCceeEEEEcC--CeEEEE---EcCeE
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKI 154 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg~i 154 (411)
+|..-+.++.|+.-|..+++|+.| ++|+|||.++. .+....+ |.+.|..+.|.+ -|+.++ .|+++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred CCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 566778889999999999999998 99999996443 2333444 899999999975 367777 89999
Q ss_pred EEEEcCC---------ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-------cceEEE------
Q 015198 155 YVYSFVD---------LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------NMIKLI------ 212 (411)
Q Consensus 155 ~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~------ 212 (411)
.||.-.. -.....+......+..+.|+|..-|..||+ .+.||.++|+.... .....+
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9998511 122334455566677788888888888876 56899999965432 111122
Q ss_pred -eccccceeEEEecCCC---CEEEEEcCC-----CeEEEEEECCCCc----eEEEEeCCCCCcceEEEEeCCC----CCE
Q 015198 213 -NAHDSHIACFTLTLDG---LLLATASTR-----GTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPN----VQW 275 (411)
Q Consensus 213 -~~~~~~i~~l~~sp~g---~~l~s~s~d-----g~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spd----g~~ 275 (411)
..+..+..|+.|+|.. .+||.|+.+ +. ++||....+. .+.++.+ |..+|++|+|.|+ -.+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCceee
Confidence 2466778899999743 578888876 35 8888765432 3445555 8889999999995 347
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198 276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (411)
||+++.|| |+||++......-..+.. ..+..+.++ ...-+..+
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~----------------------------------~~~~~~~~l--~v~~vs~~ 284 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEV----------------------------------LAPDLMTDL--PVEKVSEL 284 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcc----------------------------------cCCCCcccc--ceEEeeec
Confidence 99999999 999999864321100000 000000000 00111223
Q ss_pred EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEE
Q 015198 356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEML 396 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~ 396 (411)
.-+.+.+..+.|.=- ..|...|.||.|+.|+..-.+.-.|+
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence 333356777888655 55666777999999987765444555
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.9e-16 Score=131.34 Aligned_cols=243 Identities=16% Similarity=0.149 Sum_probs=178.3
Q ss_pred ccCCCCCCeEEEEEcCCCC-EEEEEeC--------CcEEEEecCCCcce-----E--EeecC-CCCEEEEEEeccCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYG-CFAAGTS--------CGFRIYNCEPFKET-----F--RRDLK-SGGFRIVEMLFRCNILA 101 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~-~la~g~d--------g~i~iw~~~~~~~~-----~--~~~~~-~~~~~~~~~~~~~~~~~ 101 (411)
.+..|.+.|+.++-+|-.+ .|+++.. ..+.||.+...... + ...+. .+...+.++.|.|+...
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 3456889999999999755 5555442 24689998632211 0 01121 23346788899999888
Q ss_pred EEecCCCCCCCCCeEEEEECCCCcE-EEEEe------ecCceeEEEEcC--CeEEEE--EcCeEEEEEcCCceeeEEEe-
Q 015198 102 LVGAGDNSQYPPTKVIIWDDHQSRC-IGEFA------FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIE- 169 (411)
Q Consensus 102 l~s~~~d~~~~d~~i~vwd~~~~~~-~~~~~------~~~~i~~~~~~~--~~~~~~--~dg~i~iwd~~~~~~~~~~~- 169 (411)
+++-.+ ..|.+|++..+.. +..+. +....++-+|+| ++..++ .|+++..||+++.+....++
T Consensus 138 lasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 138 LASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred eEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 887654 8999999988765 44443 355677788988 666666 89999999999988777774
Q ss_pred ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEEC
Q 015198 170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNT 246 (411)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~ 246 (411)
.|.. .+..+.++|+.++++++++.||.|+||+.+. .+++.+.+|...|+++.|+|.. ++|++++.|.. |.+|..
T Consensus 212 AHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca 288 (370)
T KOG1007|consen 212 AHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCA 288 (370)
T ss_pred hhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEec
Confidence 3444 5677778888777777888999999999765 5788899999999999999865 57889999999 999864
Q ss_pred CCC-----------------------------ceEEEEeCCCCCcceEEEEeCCCCCE-EEEEeCCCcEEEEEccc
Q 015198 247 VDG-----------------------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRV 292 (411)
Q Consensus 247 ~~~-----------------------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~ 292 (411)
..- ..+.++.. |+..|++++||.-..+ +|+-+.||.+.|=++..
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 320 12234444 7889999999975554 67889999998866654
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=8.5e-15 Score=134.98 Aligned_cols=221 Identities=11% Similarity=0.103 Sum_probs=141.2
Q ss_pred CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEe-cCCCCCCCCCeEEEEECC-CCcE--EEEEeecCceeE
Q 015198 64 SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVG-AGDNSQYPPTKVIIWDDH-QSRC--IGEFAFRSDVRS 138 (411)
Q Consensus 64 dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~~~d~~i~vwd~~-~~~~--~~~~~~~~~i~~ 138 (411)
++.|.+|++.+... .....+ ........+.++|++..+.. +..+ +.|.+|++. +++. +...........
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCceE
Confidence 99999999964322 222223 22234556678888765543 3334 899999986 3432 233334456778
Q ss_pred EEEcCCeEEEE----EcCeEEEEEcCC-ce---eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cce
Q 015198 139 VKLSRDRIVVV----LEHKIYVYSFVD-LK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI 209 (411)
Q Consensus 139 ~~~~~~~~~~~----~dg~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~ 209 (411)
+.++|++++++ .++.|.+|++.+ +. .+..+.... ....+.+++++++++++...++.|.+|+.+. ..+
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 99999998776 479999999964 32 222222222 2233445667777777777889999988754 222
Q ss_pred E-----EEe-ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCC--Cc--eEEEEeCC----CCCcceEEEEeCCCCC
Q 015198 210 K-----LIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD--GT--RLQEVRRG----VDRAEIYSIALSPNVQ 274 (411)
Q Consensus 210 ~-----~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~--~~--~~~~~~~~----~~~~~v~~l~~spdg~ 274 (411)
. ... ........++|+|+|++|++++. ++. |.+||+.. ++ .+..+... .+......+.++|+|+
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 111 12334578999999999988876 777 99999973 33 23333321 0111234688999999
Q ss_pred EEEEEeC-CCcEEEEEccccc
Q 015198 275 WLAVASD-KGTVHIFSLRVRV 294 (411)
Q Consensus 275 ~l~s~s~-dg~I~vwd~~~~~ 294 (411)
+|+++.. ++.|.+|+++...
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCC
Confidence 9998854 6889999997643
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.7e-16 Score=141.83 Aligned_cols=264 Identities=13% Similarity=0.129 Sum_probs=181.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEe-c------cCCeEEEEecCCCCCCCC
Q 015198 41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEML-F------RCNILALVGAGDNSQYPP 113 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~l~s~~~d~~~~d 113 (411)
..|...|.|+.|+.....+.+++|..+.+|+--.........+... .-...+. + ......++-++.|
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h~~~rs~~~g~~~d~~~i~s~D----- 84 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMHLGGRSSGGGKGSDTLLICSND----- 84 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCCccccccccccCCCCCcceEEEEcCC-----
Confidence 3577788899999999888888877776665432222111111011 0011111 1 1112334444444
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
|.+.+.+ +.++....+. |.+.+.+-.|+|||.-++ .||.|++|. ++|-+..++.....++.+.++.++.+ -+
T Consensus 85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~--~v 160 (737)
T KOG1524|consen 85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN--SI 160 (737)
T ss_pred ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC--ce
Confidence 9999988 6777766676 999999999999998777 799999999 56655555555555555556655544 34
Q ss_pred EEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198 190 ACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (411)
+++ ..+.+.|-.. ....+...++|.+-|.++.|++...++++|++|-. .+|||- .|..+..-.. |+-+|++++
T Consensus 161 l~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITSva 234 (737)
T KOG1524|consen 161 VFC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITSVA 234 (737)
T ss_pred EEe--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceeeee
Confidence 443 3567888433 34556678999999999999999999999999999 999995 6777766555 777999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (411)
|.|| ..++.++.. +++ ++.+.
T Consensus 235 ~npd-~~~~v~S~n-t~R---~~~p~------------------------------------------------------ 255 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TAR---FSSPR------------------------------------------------------ 255 (737)
T ss_pred eccc-cceeeeeee-eee---ecCCC------------------------------------------------------
Confidence 9999 666666543 344 22221
Q ss_pred ccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.+.++.++|+++ .++.++++.|.+.+--.-+
T Consensus 256 ----------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 256 ----------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred ----------ccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 146778999999 8899999999887754443
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=5.5e-15 Score=136.24 Aligned_cols=240 Identities=12% Similarity=0.070 Sum_probs=155.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcce-EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
+.+....++++|++++|+++. ++.|.+|+++..... ..... ........+.+++++..++++.. .++.|.+|
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~----~~~~v~v~ 107 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASY----NANCVSVS 107 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEc----CCCeEEEE
Confidence 345677899999999998776 899999999732222 22211 11223456888888876665543 13999999
Q ss_pred ECCC-C---cEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE-----EEeccCCCcceEEEccCCCc
Q 015198 120 DDHQ-S---RCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-----QIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 120 d~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 186 (411)
++.+ + +.+..+........++++|++++++ .++.|.+||+.+...+. ...... ......+.+++++
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 9864 3 2233333444567788999987775 57999999997633221 111111 1123345666777
Q ss_pred eEEEEecCCCCeEEEEEcCC-----cceEEEecc------ccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCc----
Q 015198 187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAH------DSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT---- 250 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~---- 250 (411)
++++++...++.|.+|+.+. +.+..+..+ ......+.++|+|++|+++.. ++. |.+|++....
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~~ 265 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVLS 265 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeEE
Confidence 78776655689999987752 122233221 112336889999999998865 566 9999986543
Q ss_pred eEEEEeCCCCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEccc
Q 015198 251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV 292 (411)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~ 292 (411)
.+..+..+ .....+.|+|||++|+++.. +++|.+|+++.
T Consensus 266 ~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 266 FEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 22222221 24567899999999998775 88999999864
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.2e-16 Score=140.08 Aligned_cols=240 Identities=16% Similarity=0.161 Sum_probs=175.5
Q ss_pred eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEE
Q 015198 81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYV 156 (411)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~i 156 (411)
..+.+|...+.++...+.+..+++|++| |+|+||.+.+|.|++.+...+.|.+++|+|.....+ .+..+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 3346888889999999999999999998 999999999999999999999999999999764322 3444544
Q ss_pred EEcCCce---------ee----------------------------EEEeccCCCcceEEEccCCCceEEEEecCCC--C
Q 015198 157 YSFVDLK---------LL----------------------------HQIETLANLRGLCCLSHHSSTSVLACPGLQR--G 197 (411)
Q Consensus 157 wd~~~~~---------~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--g 197 (411)
.+..-|. ++ +..-.+.. .+..+.|+.+|.+|+++...+ .
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k--~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK--SIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC--ccceeeeecCCceEEEeccCCCcc
Confidence 4432110 00 01111222 344567777888888765433 3
Q ss_pred eEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198 198 QVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276 (411)
Q Consensus 198 ~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 276 (411)
.|.|...... ....|....+.|.++.|+|...+|++++.. . |+|||+...++++.+.. ....|..++.+|.|.-|
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~-vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-S-VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNL 622 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-c-eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeE
Confidence 4555444433 233455567889999999999999888865 4 99999988887777766 45589999999999999
Q ss_pred EEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEE
Q 015198 277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH 356 (411)
Q Consensus 277 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (411)
+.++.|+.+..||++-..+. +.+++
T Consensus 623 i~gs~d~k~~WfDldlsskP-------------------------------------------------------yk~lr 647 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKP-------------------------------------------------------YKTLR 647 (733)
T ss_pred EEecCCCeeEEEEcccCcch-------------------------------------------------------hHHhh
Confidence 99999999999999877543 12344
Q ss_pred eCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198 357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS 386 (411)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~ 386 (411)
++...+..++|++. +.+.+++.||.++||-
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 44445556789888 6666666779999974
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=8e-16 Score=130.96 Aligned_cols=238 Identities=16% Similarity=0.243 Sum_probs=171.6
Q ss_pred CCCCCCeEEEEEcCC----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCC
Q 015198 41 DVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT 114 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~ 114 (411)
+.|++..+.++|+-| ..+||+|+ -|.|+|.|+...+. ...+.+|...|.++.+.|.. .++++++.| .
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD-----~ 158 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKD-----H 158 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCC-----c
Confidence 358888999999865 34788888 99999999986443 33345888999999999864 678888888 9
Q ss_pred eEEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe------------------
Q 015198 115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE------------------ 169 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~------------------ 169 (411)
.|++|++.+..++..+. |...|.++.|+.++..++ .|.++++|++...+....++
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99999999999999986 899999999999999998 79999999997432211111
Q ss_pred ----------ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC---------------cceEEEeccccceeEE--
Q 015198 170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACF-- 222 (411)
Q Consensus 170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---------------~~~~~~~~~~~~i~~l-- 222 (411)
.|.+. +-|+.|-+ .++++ -+-++.|..|.... ..+..+.-....|+-+
T Consensus 239 ~~fp~fst~diHrny--VDCvrw~g--d~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNY--VDCVRWFG--DFILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccch--HHHHHHHh--hheee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 01111 11112222 34443 34566777787621 1122333344455555
Q ss_pred EecCCCCEEEEEcCCCeEEEEEECCCCceE--EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRL--QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 223 ~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+|+|-++.||.|...|. |.+||++..+.. .++........|...+|+.||.+|+..++|++|.-||.-
T Consensus 314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 45677889999999999 999999877652 233322234589999999999999999999999988864
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.3e-16 Score=143.13 Aligned_cols=255 Identities=12% Similarity=0.155 Sum_probs=180.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC------CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
.+..|.+.|..++|+|....|++++ ||.+++|++.. ........|.+|...|.++....++..+.+|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D--- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID--- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC---
Confidence 4567899999999999999999999 99999999932 1122234456899999999999999999999998
Q ss_pred CCCeEEEEECCCC------c----EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcce
Q 015198 112 PPTKVIIWDDHQS------R----CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGL 177 (411)
Q Consensus 112 ~d~~i~vwd~~~~------~----~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (411)
|+|+.|++... . ....+. |...++.+++++....++ .||+++.|+...... ..+.........
T Consensus 366 --g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 366 --GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred --ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999964321 1 122233 889999999998766555 699999999865444 333322221222
Q ss_pred EEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (411)
..+.+......+.++...-+.-.+++... ..+..+.. ....+..+..+|.+.+.+++..|+. |+++|..++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~ 521 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTG 521 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccccc
Confidence 23332221111111111222222222211 12222211 1235677888999999999999999 999999999
Q ss_pred ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS 302 (411)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~ 302 (411)
+.+..... |...++++++.|+|-+|++++.|+.+++|++..+.+..+...|
T Consensus 522 ~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 KILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99998888 8889999999999999999999999999999888876544433
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4e-15 Score=127.40 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=136.5
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-- 131 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-- 131 (411)
..+|++. .|.|++||..+++.+.. +..++..+..+.|.. ....+.+++.| |+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheecc
Confidence 4677777 99999999998554433 335555554555544 45667777777 999999998877666555
Q ss_pred -ec-CceeEEEEcCCeEEEE-------EcCeEEEEEcCCcee-eEEE-eccCCCcceEEEccCCCceEEEEecCCCCeEE
Q 015198 132 -FR-SDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKL-LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200 (411)
Q Consensus 132 -~~-~~i~~~~~~~~~~~~~-------~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~ 200 (411)
+. .+..+++.+-.+.+++ .+-.|.+||++..+. +..+ ..|...++.+.|.|+..+ ++.+|+.||.|.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn--lLlSGSvDGLvn 191 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN--LLLSGSVDGLVN 191 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC--eEEeecccceEE
Confidence 22 4677777775666665 478899999987665 5554 667777777777776543 444799999999
Q ss_pred EEEcCCc----ceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 201 IEHFGLN----MIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 201 i~~~~~~----~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
|++.... .+...-.|...|.++.|..++ +.|.+-+..+. ..+|+++.+.....+.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLE 251 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhccc
Confidence 9877653 233334577889999999887 45777888888 9999999887654444
No 175
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=141.61 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=182.0
Q ss_pred CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~ 124 (411)
.-+.+.++.+|++|+.|+ .|.+..+|+.+....+...+ ...+.++.|-.+..+++.+.. ..+.||| ..|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-~~G 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQK------KYVYVYD-NNG 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhhh------ceEEEec-CCC
Confidence 347899999999999999 99999999998665555433 344666777777777777765 8999999 888
Q ss_pred cEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198 125 RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 125 ~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
..++.++....|..+.|-|...+++ ..|.++.-|+.+|+.+..+........+ +..+|-+.. +..|..+|+|.+
T Consensus 201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~v--m~qNP~NaV-ih~GhsnGtVSl 277 (545)
T KOG1272|consen 201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDV--MKQNPYNAV-IHLGHSNGTVSL 277 (545)
T ss_pred cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccch--hhcCCccce-EEEcCCCceEEe
Confidence 8888888888899999999998888 6799999999999999998877764444 444554444 456889999999
Q ss_pred EEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198 202 EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (411)
Q Consensus 202 ~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (411)
|..+. .++..+..|.++|.+|++.++|+|++|++.|.. ++|||++....+.++.. ..+...++||..| +||.+
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ceeee-
Confidence 98775 567778899999999999999999999999999 99999999887777764 2357788898765 34444
Q ss_pred CCCcEEEEEc
Q 015198 281 DKGTVHIFSL 290 (411)
Q Consensus 281 ~dg~I~vwd~ 290 (411)
....|.||.=
T Consensus 352 ~G~~v~iw~d 361 (545)
T KOG1272|consen 352 YGDHVQIWKD 361 (545)
T ss_pred cCCeeeeehh
Confidence 4446999953
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.6e-14 Score=135.43 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=197.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC--CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
..|.-.+++.+++|+++++|+|. ||.|.+|.--. ....-...+|=|...+.++.|+.+|.++.+|+.+ +.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-----~VLv 276 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-----GVLV 276 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-----eEEE
Confidence 45677799999999999999999 99999996432 2222223355688889999999999999999998 9999
Q ss_pred EEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC-----------CcceEEEccC
Q 015198 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-----------LRGLCCLSHH 183 (411)
Q Consensus 118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 183 (411)
+|.+.+++...--+..++|..+.++||+.+.+ .|+.|.+....+......+.+... -...+++.+
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp- 355 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP- 355 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-
Confidence 99999998322223789999999999998776 899999998866655544433211 123344444
Q ss_pred CCceEEEEecCCCCeEEEEEcCC-cceEEEe-----------ccccceeEEEecCCCCEEEEEcC--------CCe-EEE
Q 015198 184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLIN-----------AHDSHIACFTLTLDGLLLATAST--------RGT-LIR 242 (411)
Q Consensus 184 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~-----------~~~~~i~~l~~sp~g~~l~s~s~--------dg~-~I~ 242 (411)
....++..| ..|.|.+++... ..+..+. .+.-.+++++.+-.|.+++|.-. ||. .++
T Consensus 356 -r~~~~vln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 356 -RTNSLVLNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred -CCCceeecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 333455534 789999966433 3333331 12345778888888999988642 221 378
Q ss_pred EEECCCCc----eEEEEeCCCCCcceEEEEe-CCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198 243 IFNTVDGT----RLQEVRRGVDRAEIYSIAL-SPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (411)
Q Consensus 243 vwd~~~~~----~~~~~~~~~~~~~v~~l~~-spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (411)
+|-..... +...+... |...+...++ ++... ..++++.||.++||-+..-+......
T Consensus 434 FW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~---------------- 496 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS---------------- 496 (792)
T ss_pred EEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc----------------
Confidence 89654432 33333333 5544444444 44333 78999999999999996655432100
Q ss_pred CCCccccCCCCCCCCCCcccccccccCcccccccceEEEE-eCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH-IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
+.|...-+. ...-....++|+.++.+++++.|+.+.+|..+.
T Consensus 497 -------------------------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 497 -------------------------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred -------------------------------cceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 011100000 011234568899999999999999999999887
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=3.6e-14 Score=124.16 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=187.2
Q ss_pred CCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCC-------cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPF-------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 43 h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
...+|.++.|.++.. .||+|+ |..|+||.++.. ...+...+..|...+..+.|++++.++++|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~----- 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG----- 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-----
Confidence 356899999999876 999999 999999988632 223344466888899999999999999999998
Q ss_pred CeEEEEECC--------C--------CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC
Q 015198 114 TKVIIWDDH--------Q--------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN 173 (411)
Q Consensus 114 ~~i~vwd~~--------~--------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 173 (411)
|.|.+|-.. + ......+. |...|..++|+|++.+++ .|+.+++||+..|+....+..|.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999855 2 11122233 789999999999999998 799999999999999999998888
Q ss_pred CcceEEEccCCCceEEEEecCCCCeEEEEEcC----CcceE--EE--------------ecc----ccceeEEEecCCCC
Q 015198 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----LNMIK--LI--------------NAH----DSHIACFTLTLDGL 229 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~~~~~--~~--------------~~~----~~~i~~l~~sp~g~ 229 (411)
.+.. ++++|-+++++.-+ .|...+..... ...+. .+ .-| ..-...++|+|+|.
T Consensus 167 yvqg--vawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 167 YVQG--VAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccce--eecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 5544 45555556666533 44433322111 11111 00 011 12245678999999
Q ss_pred EEEEEcC----CCe----EEEEEECCCC-ceEEEEeCCCCCcceEEEEeCC------------------CCCEEEEEeCC
Q 015198 230 LLATAST----RGT----LIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP------------------NVQWLAVASDK 282 (411)
Q Consensus 230 ~l~s~s~----dg~----~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp------------------dg~~l~s~s~d 282 (411)
+|++.+. .+. ..++|+-... ++...+.. ...+...+.|+| -+-.+|.++.+
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~ 321 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN 321 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence 9987542 122 1345543321 22333332 223344444443 23345556554
Q ss_pred CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 015198 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH 362 (411)
Q Consensus 283 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (411)
.|+|||.++..+.- .. -.++-...
T Consensus 322 -svyvydtq~~~P~~---------------------------------~v----------------------~nihy~~i 345 (434)
T KOG1009|consen 322 -SVYVYDTQTLEPLA---------------------------------VV----------------------DNIHYSAI 345 (434)
T ss_pred -eEEEeccccccceE---------------------------------EE----------------------eeeeeeee
Confidence 59999988866431 00 11222345
Q ss_pred EEEEEccC-CEEEEEEeCCcEEEEEEecCCCC
Q 015198 363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGG 393 (411)
Q Consensus 363 ~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~ 393 (411)
...+|+.+ ..|++.+.||..-.-.+++.+.|
T Consensus 346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 56899998 67777777999888888887766
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=7.6e-15 Score=123.09 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=166.0
Q ss_pred CCCCCCeEEEEEcCCCC-----EEEEEeCCcEEEEecCCCcceEE--eec-----CCCCEEEEEEeccC-CeEEEEecCC
Q 015198 41 DVDEIELISVSWNQDYG-----CFAAGTSCGFRIYNCEPFKETFR--RDL-----KSGGFRIVEMLFRC-NILALVGAGD 107 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~-----~la~g~dg~i~iw~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~ 107 (411)
-.|.-+++.+.|.|+.+ +||+ ++..+|||.+...+.... ..+ ......++++.|+. +-.++.+++-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 47889999999999863 3444 456789999874221111 111 23455677788875 5567777777
Q ss_pred CCCCCCCeEEEEECCCCcE----EEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCC-CcceE
Q 015198 108 NSQYPPTKVIIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN-LRGLC 178 (411)
Q Consensus 108 d~~~~d~~i~vwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~ 178 (411)
| -+..|||++++.. .+.+.|..+|..++|..++.-++ .||.|++||++..+.-..+..... ....+
T Consensus 172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 7 9999999999733 23345999999999999766555 799999999998766555544333 34566
Q ss_pred EEccCCCc-eEEEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCc----
Q 015198 179 CLSHHSST-SVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT---- 250 (411)
Q Consensus 179 ~~~~~~~~-~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~---- 250 (411)
.++++.+. .++|.-+-....|.|-+.+ ..++..+.+|.+.|+.|+|.|.. ..|++++.|.. +.+||+...-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG 325 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence 77776543 3455444445566664433 46788899999999999999965 58999999999 9999996532
Q ss_pred --eEEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEE
Q 015198 251 --RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIF 288 (411)
Q Consensus 251 --~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vw 288 (411)
++..+. ..+.|+.+.|++ .+.+|+.+... ++.+.
T Consensus 326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred CCchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 122222 345899999995 56788777654 35443
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=2.3e-16 Score=148.96 Aligned_cols=293 Identities=12% Similarity=0.141 Sum_probs=203.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
..+.+|...|+|+.|...|.++++|+ |..++||.+++...... +.+|...+..++.+.+...+++++.| ..|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n~~iaaaS~D-----~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNNTMIAAASND-----KVI 256 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhhhhhhhcccC-----ceE
Confidence 45679999999999999999999999 99999999987555444 45899999999999999999999988 999
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEecc---CCCcceEEEccCCCceEEEE
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 191 (411)
++|.+..+.++..+. |.+.|++++|+|-. .. .||++++||.+ ...+...... .....++.+-+...+.-++
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~- 332 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL- 332 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc-
Confidence 999999999999887 99999999999965 22 79999999986 1111110000 0111222333322222232
Q ss_pred ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
+|+.|+.-..|..... ..+...+.-+.++.+- .+.+++-.+-. +++|++.+|.+++.+.+ |...+..+.++
T Consensus 333 Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~H 404 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQL-----AWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVH 404 (1113)
T ss_pred cccCCcccccchhhHh-----hhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeec
Confidence 4566666555433211 1112122222222222 34555666677 99999999999888888 77788889999
Q ss_pred CCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccc
Q 015198 271 PNVQW-LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSE 349 (411)
Q Consensus 271 pdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (411)
|-... ..+++.||...|||+-.|.+.+
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik---------------------------------------------------- 432 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIK---------------------------------------------------- 432 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcce----------------------------------------------------
Confidence 96654 4589999999999999987653
Q ss_pred cceEEEEeCCCceEEEEEccCCEEEEEEeC-CcEEEEEEecCCCCcEEEeeeeeccccC
Q 015198 350 WSFAQFHIPEVTHFIAAFGSQNTVVIVSMD-GSFYRCSFDPVHGGEMLQQEYVRFLKTV 407 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (411)
....+..-...+.|+++++-++.+.| |.+||..... +......+|.+|.-.+
T Consensus 433 ----~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq--s~s~k~ak~dqffl~d 485 (1113)
T KOG0644|consen 433 ----HYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ--SKSQKKAKYDQFFLGD 485 (1113)
T ss_pred ----eeecccceeeccccCCCCceEecCCCCCceEEeccCC--CccccccccceEeecC
Confidence 11122344566889999766666665 9888887776 4345556666665443
No 180
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=131.56 Aligned_cols=294 Identities=12% Similarity=0.111 Sum_probs=196.9
Q ss_pred CCCCCCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 41 DVDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
-++...-+.|..+|||+|+. +|. .-.|++||+......+...+....+.+.- .+.|...++--..| ..|.+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK~v~L~~D-----R~Ief 120 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSKSVFLQND-----RTIEF 120 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhhheEeecC-----ceeee
Confidence 46778889999999999876 555 99999999998777777765333332222 22233222222222 55555
Q ss_pred EECCCCcEEEEEeecCceeEEEEcC--CeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 119 WDDHQSRCIGEFAFRSDVRSVKLSR--DRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 119 wd~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
.. .-| ....+..+..-.+++++. ...+++ ....|+-++++.|..+..+......++++.+..-. .+|+ +|..
T Consensus 121 Ha-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h--gLla-~Gt~ 195 (703)
T KOG2321|consen 121 HA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH--GLLA-CGTE 195 (703)
T ss_pred hh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc--ceEE-eccc
Confidence 43 112 222233333344555543 223333 77889999999999999998877767777666543 4555 5888
Q ss_pred CCeEEEEEcCCcc-eEEE------ecccc-----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198 196 RGQVRIEHFGLNM-IKLI------NAHDS-----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 196 dg~i~i~~~~~~~-~~~~------~~~~~-----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
+|.|..|+...+. +..+ ..|.+ .|+++.|+.+|-.+++|..+|. |.|||+++.+++.. ..+...-+
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~-kdh~~e~p 273 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLV-KDHGYELP 273 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceee-cccCCccc
Confidence 9999999877533 2222 22333 3999999999999999999999 99999999988743 34335568
Q ss_pred eEEEEeCCCC--CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198 264 IYSIALSPNV--QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV 341 (411)
Q Consensus 264 v~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (411)
|..+.|.+.+ ..|++ .....++|||-.+|+..-
T Consensus 274 i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~a-------------------------------------------- 308 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMA-------------------------------------------- 308 (703)
T ss_pred eeeecccccCCCceEEe-cchHHhhhcccccCCcee--------------------------------------------
Confidence 9999998753 34443 345579999999998541
Q ss_pred cCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccCCC
Q 015198 342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSR 409 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (411)
.+....+...+|.+-..+.++++-.++.+..|.++..+ +- .+|++|++...+
T Consensus 309 ------------siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG--Pa--PrWCSfLdnlTE 360 (703)
T KOG2321|consen 309 ------------SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG--PA--PRWCSFLDNLTE 360 (703)
T ss_pred ------------eccccCCcCceeeecCCceEEEecCCCcceeEEccccC--CC--chhhhHHHhHHH
Confidence 11111233445555445889999999999999888733 33 689999987654
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.3e-14 Score=133.37 Aligned_cols=237 Identities=13% Similarity=0.147 Sum_probs=169.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC---eEEEEecCCCCCCCCCeEEEEECC
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
.-..-.|++|+++++...+..|.||...++..+- .++.+...+..+.+.+. ..++.+++.+ |.|++||..
T Consensus 18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~ 90 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWS 90 (792)
T ss_pred eecccccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecC-----ccEEEecCC
Confidence 3345578999999999999999999999866544 35567666666665542 2566677777 999999998
Q ss_pred CCcEEEEEeecCceeEE-----------------------------------------------------------EEcC
Q 015198 123 QSRCIGEFAFRSDVRSV-----------------------------------------------------------KLSR 143 (411)
Q Consensus 123 ~~~~~~~~~~~~~i~~~-----------------------------------------------------------~~~~ 143 (411)
.+..++++....++..+ .+++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 88887776532222222 2222
Q ss_pred CeEEEE--EcCeEEEEEcCCcee-eEEE---eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-----cceEEE
Q 015198 144 DRIVVV--LEHKIYVYSFVDLKL-LHQI---ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-----NMIKLI 212 (411)
Q Consensus 144 ~~~~~~--~dg~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~ 212 (411)
.+.+.. .+..+++|....+.. .... ..|... ..+.+.++.+.++|+ |..||.|.+|..-+ .....+
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~--~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN--ITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhccc--ceeEEeccccceEEE-eccCCcEEEEeccccccccccceEE
Confidence 222222 456667777655331 1001 122332 344555566677765 77899999986544 345667
Q ss_pred eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
.-|...|.+++|+++|.+|++|+..+. +.+|.+.+++ .+-+.. -.++|..+.++||+.+.+....|+.|.+-...+
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EecccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 889999999999999999999999999 9999999988 334444 567999999999999999999999999998877
Q ss_pred cccC
Q 015198 293 RVVG 296 (411)
Q Consensus 293 ~~~~ 296 (411)
....
T Consensus 324 l~~k 327 (792)
T KOG1963|consen 324 LEIK 327 (792)
T ss_pred hhhh
Confidence 6644
No 182
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.67 E-value=2.9e-15 Score=132.77 Aligned_cols=242 Identities=11% Similarity=0.074 Sum_probs=169.1
Q ss_pred cCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 40 SDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
...|..+|.++.|+|.. ..+++.+ ||+|++-|++.........+......+..+.|+.+...++.++.- |.+.
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-----G~f~ 304 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-----GNFN 304 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-----cceE
Confidence 46799999999999974 4555555 999999999864433333333466777788888776666666655 8999
Q ss_pred EEECCCCcE-EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE----EEeccCCCcceEEEccCCCce
Q 015198 118 IWDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 118 vwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 187 (411)
+||++++.. ...+. |...|..++++|...++. .|++++|||++...... ....|...+....|+|+. .
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~--g 382 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG--G 382 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC--C
Confidence 999888765 44444 888999999999876665 79999999997643222 223466656666666654 3
Q ss_pred EEEEecCCCCeEEEEEcC----C-cceEEEeccc----c--ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 188 VLACPGLQRGQVRIEHFG----L-NMIKLINAHD----S--HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~----~-~~~~~~~~~~----~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
.|++++ .|..|+||+.. . .+...+. |. . ......|.|+..++++|..-.. |-|+|-..++.+..+.
T Consensus 383 tl~TT~-~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 383 TLLTTC-QDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMVCELH 459 (498)
T ss_pred ceEeec-cCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEeeecc
Confidence 466654 89999998873 2 2222232 22 1 2334679999999999999999 9999988888788876
Q ss_pred CCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEcc
Q 015198 257 RGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLR 291 (411)
Q Consensus 257 ~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~ 291 (411)
......-..-..|+|-+. +++.++..|.|+||--+
T Consensus 460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccccccccceeecccccceeccCCccceEEEEecC
Confidence 642222223358999888 45555567788888644
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=9.9e-15 Score=138.59 Aligned_cols=261 Identities=13% Similarity=0.085 Sum_probs=173.1
Q ss_pred CcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcE--EEE-----EeecCce
Q 015198 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE-----FAFRSDV 136 (411)
Q Consensus 65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~-----~~~~~~i 136 (411)
+.+.||++... ......+ .....+.++.|+| +..++++|..+ |.|.+||+..+.. ... -.|..++
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 46889999864 2233333 5567788888887 45677777777 9999999877654 222 2378899
Q ss_pred eEEEEcCCeE---EEE--EcCeEEEEEcCCcee-eEEE----ecc-----CCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198 137 RSVKLSRDRI---VVV--LEHKIYVYSFVDLKL-LHQI----ETL-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 137 ~~~~~~~~~~---~~~--~dg~i~iwd~~~~~~-~~~~----~~~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
..+.|..+.. ++. .||.|..|+++.... .... ..+ .......++.+.+......+.|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9999875432 222 899999999854322 1111 110 122233444443333333335789999988
Q ss_pred -EEcCC--cc------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEEEEeCC
Q 015198 202 -EHFGL--NM------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 202 -~~~~~--~~------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
..... .. ...+..|.++|+++.++|=+..++..+.|-. ++||... ...++..+.. +...|++++|||
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSp 451 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSP 451 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcC
Confidence 22222 22 3355678999999999998876555555888 9999876 5666666666 666799999999
Q ss_pred CCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198 272 NVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW 350 (411)
Q Consensus 272 dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (411)
... .++++..||.|.+||+......-
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~~P----------------------------------------------------- 478 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDEEP----------------------------------------------------- 478 (555)
T ss_pred cCceEEEEEcCCCceehhhhhccccCC-----------------------------------------------------
Confidence 764 67788889999999998876442
Q ss_pred ceEEEEeCCCceEEEEEccCCE-EEEEEeCCcEEEEEEec
Q 015198 351 SFAQFHIPEVTHFIAAFGSQNT-VVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dg~~~~~~~~~ 389 (411)
.++.++.......+.|+++++ |++|...|.+++|.+.+
T Consensus 479 -v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 -VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 123333333455677888654 55555579999999975
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=124.71 Aligned_cols=239 Identities=12% Similarity=0.147 Sum_probs=171.2
Q ss_pred CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEc
Q 015198 84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSF 159 (411)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~ 159 (411)
..+...+.++.|..++.+ .++... |.|++|++.+...+..++ +...|+.+..-|++.+.. .|..+.+|++
T Consensus 11 Rp~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred ccccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 377788888889888874 455544 999999999988887777 678899999999877666 7888999987
Q ss_pred CCceeeEE--E-----------------------eccC--------------------------CCcceEEEc--cCCCc
Q 015198 160 VDLKLLHQ--I-----------------------ETLA--------------------------NLRGLCCLS--HHSST 186 (411)
Q Consensus 160 ~~~~~~~~--~-----------------------~~~~--------------------------~~~~~~~~~--~~~~~ 186 (411)
.-+..+.. + .-+. ..-.++++. .....
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 54211110 0 0000 000122222 12223
Q ss_pred eEEEEecCCCCeEEEEEcCCc-----------ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ce--
Q 015198 187 SVLACPGLQRGQVRIEHFGLN-----------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TR-- 251 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~~-----------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~-- 251 (411)
.+++.+|.++|.+.+|+.+.+ .......|..+|.++.|.+.-..=++|+.+.. +..|.++.. .+
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQI 243 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCcccc
Confidence 456677999999999998873 33444678999999999876555677787877 889987543 22
Q ss_pred EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198 252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP 331 (411)
Q Consensus 252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (411)
..++.. ..-.|..+.+-||++.+|+++.|+.|+||..++.+..-
T Consensus 244 ~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---------------------------------- 287 (323)
T KOG0322|consen 244 RKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---------------------------------- 287 (323)
T ss_pred cceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh----------------------------------
Confidence 122222 23368889999999999999999999999999988653
Q ss_pred CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198 332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF 387 (411)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~ 387 (411)
-.+.+.+.+..++|+++ +.+++++.|+.+-.|++
T Consensus 288 ----------------------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 ----------------------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ----------------------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 23333357788999999 88888999999999986
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3.5e-14 Score=137.70 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=187.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-CCCCEEEEEEecc--CCeEEEEecCCCCCCCCCeEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~~i~ 117 (411)
+...+-..+.|+|-...++++. ...|+|||.+..+..-.... ......+..+.+- .+..++.+++.| |.|+
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIR 1136 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIR 1136 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEE
Confidence 3444567789999999999999 78899999987554222211 0122344444443 355667777777 9999
Q ss_pred EEEC-CC----CcEEEEEe-e-------cCceeEEEEcCC-eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198 118 IWDD-HQ----SRCIGEFA-F-------RSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS 181 (411)
Q Consensus 118 vwd~-~~----~~~~~~~~-~-------~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (411)
||+- .. .+.+.... . .+.-.-+.|... |.+++ .-..|+|||....+.++.+..... ..+.+++
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS 1215 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALS 1215 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeec
Confidence 9982 22 22332222 0 011122345443 44444 346799999988777777754432 2455666
Q ss_pred cCCCc-eEEEEecCCCCeEEEEEcCCc----ceEEEeccccc--eeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEE
Q 015198 182 HHSST-SVLACPGLQRGQVRIEHFGLN----MIKLINAHDSH--IACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQ 253 (411)
Q Consensus 182 ~~~~~-~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~--i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~ 253 (411)
.+-.+ ..+ ++|..||.|++++.+.. .+...+.|... |..+.+.+.|- .|++|+.+|. |++||++......
T Consensus 1216 ~~~~~gn~i-~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1216 ADLVHGNII-AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET 1293 (1387)
T ss_pred ccccCCceE-EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc
Confidence 65443 455 45899999999887653 45666788877 99999998775 4999999999 9999998743222
Q ss_pred --EEeCCCCCc-ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCC
Q 015198 254 --EVRRGVDRA-EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN 330 (411)
Q Consensus 254 --~~~~~~~~~-~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (411)
++..+...+ ..+++..+++...+|+|+. +.|+||++...+...
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~--------------------------------- 1339 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI--------------------------------- 1339 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc---------------------------------
Confidence 222211113 5899999999999999998 889999998665331
Q ss_pred CCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.. +.++++. + ..+...+++|+|. -.+++|..|..|-||..+.
T Consensus 1340 ~k----~n~~F~~----q---------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1340 IK----YNPGFMG----Q---------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred cc----cCccccc----C---------cCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 00 1111111 0 1134578899998 5566666689999998775
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.6e-15 Score=132.00 Aligned_cols=196 Identities=20% Similarity=0.257 Sum_probs=147.2
Q ss_pred EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE
Q 015198 91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH 166 (411)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~ 166 (411)
..++|..++..+++++.| |++|||+..+...+.... |...|.++.|+||+++++ .| ..+||+.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 567788999999999998 999999977766655554 999999999999999998 45 99999999997666
Q ss_pred EEeccCCC--cceEEEccCCC--ceEEEEecCCCCeEEE-----EEcCCcc--eEEEeccccceeEEEecCCCCEEEEEc
Q 015198 167 QIETLANL--RGLCCLSHHSS--TSVLACPGLQRGQVRI-----EHFGLNM--IKLINAHDSHIACFTLTLDGLLLATAS 235 (411)
Q Consensus 167 ~~~~~~~~--~~~~~~~~~~~--~~~l~~~g~~dg~i~i-----~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (411)
.......+ ...|.|..++. ..++++.-...+.|+. |... .. ..........|.+++.+++|++++.|+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 65432222 23445554442 2233433334444544 3332 11 111222345799999999999999999
Q ss_pred CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.||. |-|++..+.+.++.++.. |...|+.+.|+||.+++++.+.|.++.|..+.-.+.
T Consensus 301 ~dGs-Vai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 301 MDGS-VAIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred cCCc-EEEEEeceeeeeEeehhh-heeeeeeEEEcCCcCcccccccCCceeEEEEeeccc
Confidence 9999 999999888888777654 888999999999999999999999999999876443
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=2e-14 Score=122.20 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
.++|+|.+|++|++.+|++. ...|.||.....+ ......+..|...+..+.|.+....+++++.| ..-+||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC-----CCcccccc
Confidence 46899999999999999999 8899999988755 34445566788888889999999999999988 88889986
Q ss_pred -CCCcEEEE---EeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 122 -HQSRCIGE---FAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 122 -~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
..++-..+ ++++...+++.|+|.+ ..+|+ |+...
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e-----------------------------------------nkFAV-gSgar 122 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKE-----------------------------------------NKFAV-GSGAR 122 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcC-----------------------------------------ceEEe-ccCcc
Confidence 33322211 1244444444444433 33333 44555
Q ss_pred eEEEEEcCCcce-----EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-----C-------------CceEEE
Q 015198 198 QVRIEHFGLNMI-----KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-----D-------------GTRLQE 254 (411)
Q Consensus 198 ~i~i~~~~~~~~-----~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-----~-------------~~~~~~ 254 (411)
.|.|+.+..+.- ..-+.++..|++++|+|++-+|++|+.|+. .|||..- . |+++.+
T Consensus 123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 566644443221 122456788999999999999999999999 9999631 1 233334
Q ss_pred EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
+.. ..+.|..+.|+|+|..|+-.+.|..+.+=|-..+.+
T Consensus 202 ~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 202 ASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred hcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 432 456899999999999999999999999988877753
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.65 E-value=1.5e-13 Score=119.93 Aligned_cols=209 Identities=13% Similarity=0.158 Sum_probs=147.1
Q ss_pred CCeEEEEEcC-----CCCEEEEEe----CCcEEEEecCCCcceEE--eecCCCCEEEEEEeccC-CeEEEEecCCCCCCC
Q 015198 45 IELISVSWNQ-----DYGCFAAGT----SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRC-NILALVGAGDNSQYP 112 (411)
Q Consensus 45 ~~V~~l~~s~-----~g~~la~g~----dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~ 112 (411)
=.|+..+|.. +.++||+-. .|...+.-+..-+++-. -.+.+|...+..+.|+| +...+++|++|
T Consensus 28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD---- 103 (472)
T KOG0303|consen 28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSED---- 103 (472)
T ss_pred eeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCC----
Confidence 3566666653 355666533 33344443332111100 11347888999999998 67889999998
Q ss_pred CCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
.+|.||++..+.....+ -+.+..+.+|...+..+.+++...+ .|++
T Consensus 104 -~~v~vW~IPe~~l~~~l-------------------------------tepvv~L~gH~rrVg~V~wHPtA~N-VLls- 149 (472)
T KOG0303|consen 104 -TKVMVWQIPENGLTRDL-------------------------------TEPVVELYGHQRRVGLVQWHPTAPN-VLLS- 149 (472)
T ss_pred -ceEEEEECCCcccccCc-------------------------------ccceEEEeecceeEEEEeecccchh-hHhh-
Confidence 99999997665432211 1556677888888888888887664 3444
Q ss_pred cCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc-ceEEEEeC
Q 015198 193 GLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYSIALS 270 (411)
Q Consensus 193 g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~l~~s 270 (411)
++.|.+|.+|+..... +..+. |...|+++.|+.||.+|++.+.|.. |||||.++++.+.+-.. |.+ .-..+.|-
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~--heG~k~~Raifl 225 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVA--HEGAKPARAIFL 225 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeeccc--ccCCCcceeEEe
Confidence 4479999999987644 44455 9999999999999999999999999 99999999999988766 433 45566788
Q ss_pred CCCCEEEEEe---CCCcEEEEEcccccc
Q 015198 271 PNVQWLAVAS---DKGTVHIFSLRVRVV 295 (411)
Q Consensus 271 pdg~~l~s~s---~dg~I~vwd~~~~~~ 295 (411)
.+|.++.+|- .+..+-+||-.+-++
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ccCceeeeccccccccceeccCcccccC
Confidence 8888544443 467899998776654
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=2.3e-12 Score=121.93 Aligned_cols=238 Identities=20% Similarity=0.327 Sum_probs=180.4
Q ss_pred CCeEEEEE-cCCCC-EEEE-Ee-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCC-CCCCCCCeEEE
Q 015198 45 IELISVSW-NQDYG-CFAA-GT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVII 118 (411)
Q Consensus 45 ~~V~~l~~-s~~g~-~la~-g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~d~~i~v 118 (411)
..+..+.+ ++++. +++. +. ++.+.+|+... ...... +..+...+..+.|++++..++.++. + +.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~ 182 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLD-----GTIKL 182 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--EecCcccEEEEEECCCCCEEEecCCCC-----CceEE
Confidence 47777777 88887 4444 34 89999999986 333333 3367777788999999877777764 6 99999
Q ss_pred EECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEe
Q 015198 119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
|++..+..+..+. |...+.+++|+|++. .++ .|+.|++||...+..+. .+..|.... ...+.+.. ..++ +
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~ 258 (466)
T COG2319 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG--SLLA-S 258 (466)
T ss_pred EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC--CEEE-E
Confidence 9999888888887 799999999999986 444 68999999988777777 577776644 44455544 4555 5
Q ss_pred cCCCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198 193 GLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS 270 (411)
Q Consensus 193 g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s 270 (411)
++.++.+++|+..... ...+..|...+.++.|+|++..+++++.|+. +++||+.+...........|...+..+.|.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 7799999998876433 3444678899999999998888888999988 999999888776666511266578999994
Q ss_pred CCCCEEEEE-eCCCcEEEEEccccc
Q 015198 271 PNVQWLAVA-SDKGTVHIFSLRVRV 294 (411)
Q Consensus 271 pdg~~l~s~-s~dg~I~vwd~~~~~ 294 (411)
+++..++.+ ..|+.+.+|++....
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCCc
Confidence 343556655 678889999998876
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=5.9e-15 Score=133.28 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=159.8
Q ss_pred EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCc
Q 015198 58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD 135 (411)
Q Consensus 58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~ 135 (411)
.|+.++ ||.+.|.+-.. . .......|...+.+-.|+++|..+++.++| |.|++|. ++|-...++. ...+
T Consensus 77 ~~~i~s~DGkf~il~k~~--r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA--R-VERSISAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred eEEEEcCCceEEEecccc--h-hhhhhhhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence 455555 99998877542 2 222244788888899999999999999998 9999999 6776555544 7889
Q ss_pred eeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe
Q 015198 136 VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN 213 (411)
Q Consensus 136 i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~ 213 (411)
|+|++|.|+...++ ..+.+.|=.+.....+-.++.|.+ -+++++|++...++++ |++|-..++|+-.+..+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIAS-GGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc--EEEEeecCccccceee-cCCceeEEeecccCcccccCC
Confidence 99999999877666 778888888876666667788887 6677888887777765 779999999999999999999
Q ss_pred ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
.|+.+|++++|+|+ +.++.++.+ . .| +... ..+.|..++||+||..++.|+..|.+.+=
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence 99999999999999 666666543 3 44 2222 45689999999999999999999976543
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=3.3e-14 Score=123.98 Aligned_cols=226 Identities=12% Similarity=0.125 Sum_probs=161.9
Q ss_pred cccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcce-----EEeecCCCCEEEEEEeccCCe-EEEEecCCCC
Q 015198 38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET-----FRRDLKSGGFRIVEMLFRCNI-LALVGAGDNS 109 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~ 109 (411)
....+|.++|..++|+|-+ ..||+|+ |.+|.||.+-..... ....|.+|...+--+.|+|.. .+|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence 4578999999999999964 5677888 999999998643221 123355788888888899853 567777776
Q ss_pred CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
++|.+||+.+|+.+.++.|...|.++.|+.||.+++ .|..|+|||.++++.+..-..|.+... ....+-.++
T Consensus 154 ----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g 228 (472)
T KOG0303|consen 154 ----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASG 228 (472)
T ss_pred ----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccC
Confidence 999999999999999999999999999999999998 799999999999999988866655333 223333444
Q ss_pred eEEEEecC---CCCeEEEEEcCC--cc--eEEEeccccceeEEEecCCCCEEEE-EcCCCeEEEEEECCCCce-EEEEeC
Q 015198 187 SVLACPGL---QRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDGTR-LQEVRR 257 (411)
Q Consensus 187 ~~l~~~g~---~dg~i~i~~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~~~-~~~~~~ 257 (411)
. ++++|. .+..+.+|+... .+ ...+. ....|.---|.+|..++.. |-.|+. ||.|.+....+ ++-+..
T Consensus 229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT 305 (472)
T ss_pred c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence 4 556663 466778887654 22 22222 2344555567888887654 556888 99999876553 222322
Q ss_pred CCCCcceEEEEeCCC
Q 015198 258 GVDRAEIYSIALSPN 272 (411)
Q Consensus 258 ~~~~~~v~~l~~spd 272 (411)
.....+-..+.|-|.
T Consensus 306 f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 306 FSSKEPQRGMGFMPK 320 (472)
T ss_pred cccCCcccccccccc
Confidence 113345566777664
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=123.55 Aligned_cols=228 Identities=12% Similarity=0.133 Sum_probs=164.0
Q ss_pred CCCeEEEEEc-------CCCCEEEEEe-CCcEEEEecCCCcceEEeecCC---CCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 44 EIELISVSWN-------QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS---GGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 44 ~~~V~~l~~s-------~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
..-|+..+|= |+..++|+.+ +.-|++||.-+++.......-. .-....++.|++++..|..|-.
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----- 178 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----- 178 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----
Confidence 4456776664 6677888888 9999999998766443322211 2234577899999999888766
Q ss_pred CCeEEEEEC-CCCcEEEEE---e-----ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEE
Q 015198 113 PTKVIIWDD-HQSRCIGEF---A-----FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC 179 (411)
Q Consensus 113 d~~i~vwd~-~~~~~~~~~---~-----~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 179 (411)
+.|+++|+ +.|..-..+ . ..+-|.+++|+|... .++ ....+-||.-..+.++..+.+|.+.+ ..
T Consensus 179 -rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv--Th 255 (406)
T KOG2919|consen 179 -RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV--TH 255 (406)
T ss_pred -ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe--ee
Confidence 89999998 555432222 2 267789999999665 444 45666677766778888888888844 45
Q ss_pred EccCCCceEEEEecCCCCeEEEEEcCC--cceEEEecccc-ceeEE--EecCCCCEEEEEcCCCeEEEEEECCC-CceEE
Q 015198 180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDS-HIACF--TLTLDGLLLATASTRGTLIRIFNTVD-GTRLQ 253 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~-~i~~l--~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~ 253 (411)
+.+.++|..|.+.+..+-.|..|+.+. .++..+..|.. .-..| ...|++++|++|+.||. |++||+++ |..+.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEVS 334 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCccc
Confidence 555556667776555677788899875 45666666655 22334 44689999999999999 99999988 66566
Q ss_pred EEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 254 EVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
.+.. +...++.++++|--.++|+++..
T Consensus 335 v~~~--~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 VTGN--YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--ccccccceecCcccceeeeccCc
Confidence 6655 77789999999997788877654
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.4e-13 Score=117.46 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=123.0
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (411)
Q Consensus 49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~ 128 (411)
-.+|+|+|+++|+..+-.+.|-|.++.+...... --..+.-+.|..+..++..+.. .++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~---cldki~yieW~ads~~ilC~~y----k~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL---CLDKIVYIEWKADSCHILCVAY----KDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH---HHHHhhheeeeccceeeeeeee----ccceEEEEEeecceeEE
Confidence 4689999999999997788888888754322111 1122444556666554444322 34899999999998888
Q ss_pred EEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC--------
Q 015198 129 EFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------- 195 (411)
Q Consensus 129 ~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------- 195 (411)
.+. ....+.+++|+|||+.+. .+-.|.+|.+.+.+....-. ....+ -.+++++++++.+.....
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~--kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNV--KGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCc--eeEEECCCCceeeeeecccHHHHHHH
Confidence 888 688999999999997777 58899999998766543322 22222 344455555555543321
Q ss_pred ---------------------------CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 196 ---------------------------RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 196 ---------------------------dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
+..+.+|+.-.+.........-.+..++|+|.+++|+.|+.|+. +||.+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvln 238 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLN 238 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhc
Confidence 22233344333322222223457888999999999999999998 88765
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2e-14 Score=123.13 Aligned_cols=184 Identities=10% Similarity=0.153 Sum_probs=138.9
Q ss_pred EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccc-cceeEEEec
Q 015198 150 LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHD-SHIACFTLT 225 (411)
Q Consensus 150 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~-~~i~~l~~s 225 (411)
.+|.|++||..+++.+..++.+......+.|.-.. +...+.+++.||.|++|+.+.. .......+. .+..+++.+
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 79999999999999999999888777777776643 2334556789999999997753 334445555 567788887
Q ss_pred CCCCEEEEEcC----CCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198 226 LDGLLLATAST----RGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDS 299 (411)
Q Consensus 226 p~g~~l~s~s~----dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~ 299 (411)
-.++++++|.. +-. |.+||++..+. +..+... |...|+++.|+| +.++|++|+.||-|.|||+....+.. .
T Consensus 127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-a 203 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-A 203 (376)
T ss_pred CcCCeEEeccccccCceE-EEEEEeccccchhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-h
Confidence 78888888764 455 99999998876 5555443 888999999999 45689999999999999998774332 1
Q ss_pred CCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEE
Q 015198 300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVS 377 (411)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 377 (411)
..+ +++ . ...+..+.|..+ .+|.+.+
T Consensus 204 L~~------------------------------------------viN---------~-~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 204 LLH------------------------------------------VIN---------H-GSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred HHH------------------------------------------hhc---------c-cceeeeeeeecCCcceEEEEE
Confidence 111 111 1 124567889887 5999999
Q ss_pred eCCcEEEEEEec
Q 015198 378 MDGSFYRCSFDP 389 (411)
Q Consensus 378 ~dg~~~~~~~~~ 389 (411)
..+.+++|++..
T Consensus 232 H~Etf~~~ele~ 243 (376)
T KOG1188|consen 232 HMETFAIYELED 243 (376)
T ss_pred ccCceeEEEccC
Confidence 999999999987
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=2.3e-13 Score=114.31 Aligned_cols=240 Identities=14% Similarity=0.144 Sum_probs=167.0
Q ss_pred CCCeEEEEEcC--C-CCEEEEEe-----CCcEEEEecCC--CcceEEeecCCCCEEEEEEeccCCe-----EEEEecCCC
Q 015198 44 EIELISVSWNQ--D-YGCFAAGT-----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNI-----LALVGAGDN 108 (411)
Q Consensus 44 ~~~V~~l~~s~--~-g~~la~g~-----dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d 108 (411)
.-+++++.|+. + +.+||.|+ .+.|.|-.++. .+.+....| .+.-.+..+.|.|+. .+|++++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence 45688999983 3 45788888 46677766653 222222333 677778888888765 3566654
Q ss_pred CCCCCCeEEEEECCC--CcEEEE--E------eecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCce---eeEEEecc
Q 015198 109 SQYPPTKVIIWDDHQ--SRCIGE--F------AFRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLK---LLHQIETL 171 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~--~~~~~~--~------~~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~---~~~~~~~~ 171 (411)
..+++|.+.. .+.... + .+..+++++.|+.-.. ++. .|.+..|||++++. ...++-.|
T Consensus 121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 6899999763 222111 1 2578999999987443 333 79999999998863 34556678
Q ss_pred CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EEe---ccccceeEEEecCC-CCEEEEEcCCCeEEEEEEC
Q 015198 172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LIN---AHDSHIACFTLTLD-GLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~---~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~ 246 (411)
...+..++|.-.+ ..++|+ .+.||.+++++.+...-. .+. ....+...++|++. -+++|+-..|...|.|.|+
T Consensus 196 DKEV~DIaf~~~s-~~~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 196 DKEVYDIAFLKGS-RDVFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred CcceeEEEeccCc-cceEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 8866666665522 234555 458999999766553322 222 22567788889864 4688887777666999999
Q ss_pred CCC-ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEcccccc
Q 015198 247 VDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
+.. ..+.++.+ |.+.|+.++|.|.. ..|++++.|..+.+||++..-.
T Consensus 274 R~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 274 RVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 864 56778888 99999999999954 5899999999999999987653
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.3e-13 Score=109.98 Aligned_cols=195 Identities=10% Similarity=0.105 Sum_probs=134.8
Q ss_pred EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC---------C-cEEEEEe-ecCceeEEEEcCCeEEEEEcCeEEEEE
Q 015198 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ---------S-RCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYS 158 (411)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~---------~-~~~~~~~-~~~~i~~~~~~~~~~~~~~dg~i~iwd 158 (411)
+.+-+++|...+++.+..+ |.|.+..+++ + ..+...+ |.++|+.++|..+-.+.+.||.|+-|.
T Consensus 13 vf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEee
Confidence 4445678888889998887 9999998653 2 2233334 899999999996666666899999998
Q ss_pred cCCce------eeEEEec--c-----CCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEe
Q 015198 159 FVDLK------LLHQIET--L-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTL 224 (411)
Q Consensus 159 ~~~~~------~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~ 224 (411)
.+... .+..... + ...+..+.+.|.. .-++.+| .|+.++-|+. +++..+.+++|...|.++.-
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 64321 1111111 1 1123334444443 3344445 6889988654 56777889999999999988
Q ss_pred cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc--------ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA--------EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~--------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
-.....+++|++||+ +|+||.++++.+..+....++. .|.+++ -+..+|++|+.- .+.+|+++..++.
T Consensus 165 R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp-~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP-KLSLWHLRSSEST 240 (325)
T ss_pred cccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC-ceeEEeccCCCce
Confidence 554556899999999 9999999999998886543332 344444 456788777654 5999999987643
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.8e-15 Score=130.77 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=181.8
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQY 111 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~ 111 (411)
.+...+..|.+.|..|.|+..|..|++|+ |..|.+||+......+...- +|...+....|-| +..-+++++.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~d--- 208 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRD--- 208 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceecccc---
Confidence 34456789999999999999999999999 99999999988666655432 5666666655555 45678888887
Q ss_pred CCCeEEEEEC-CCCcEEEEE---eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEec--cCC--CcceEE
Q 015198 112 PPTKVIIWDD-HQSRCIGEF---AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIET--LAN--LRGLCC 179 (411)
Q Consensus 112 ~d~~i~vwd~-~~~~~~~~~---~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~--~~~--~~~~~~ 179 (411)
|.+++=.+ .++.+..+. +|.++|..++.-|+....+ .|+.+.-+|++.+.....+.. +.. .+....
T Consensus 209 --gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 209 --GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred --CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 99998874 444443232 3899999999988766555 789999999987654433321 222 256667
Q ss_pred EccCCCceEEEEecCCCCeEEEEEcCCc-------ceEEEe------ccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 180 LSHHSSTSVLACPGLQRGQVRIEHFGLN-------MIKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~-------~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
++.+|.+....++|+.|..+++++...- .+..+. ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~ 365 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK 365 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence 7777776655556778999999665431 122222 22356999999988877777777877 999953
Q ss_pred CC--C----------ceEEE-EeCCCCCcceEEEEeC-CCCCEEEEEeCCCcEEEEEccccccC
Q 015198 247 VD--G----------TRLQE-VRRGVDRAEIYSIALS-PNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 247 ~~--~----------~~~~~-~~~~~~~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.- | ..+.. ++++.....|..+-|- |...++++|+.-|.|.||+-.+++..
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 32 2 22223 6665445577777664 78899999999999999999888754
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=3.2e-15 Score=132.81 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=168.0
Q ss_pred EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee
Q 015198 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~ 165 (411)
.....+.|..+|..++-++.- |.|..+|..+++...++.....|.++.|-.+.++++ ....++||| ..|..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEE
Confidence 345677888899988888877 999999999999999999999999999999888887 789999999 567778
Q ss_pred EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
+.++.+. .+..+.+-|...+| ++++..|.++. +...++.+..+....+.+..++-+|-...+-+|...|. |.+|
T Consensus 204 HClk~~~---~v~rLeFLPyHfLL-~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlW 278 (545)
T KOG1272|consen 204 HCLKRHI---RVARLEFLPYHFLL-VAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLW 278 (545)
T ss_pred eehhhcC---chhhhcccchhhee-eecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEec
Confidence 8887654 34455555554444 45778899888 77778888888888899999999999999999999999 9999
Q ss_pred ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.....+++..+.. |.++|.+|++.++|+++++.+.|..++|||++.-...
T Consensus 279 SP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 279 SPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred CCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 9988888877777 9999999999999999999999999999999987744
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.8e-13 Score=129.01 Aligned_cols=171 Identities=13% Similarity=0.033 Sum_probs=118.4
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
..|.+||..... .+.+. +...+....|+||+..++ . +..|++||+.+++...... ... ......++|++
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g--~~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG--HNGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC--ccCceeECCCC
Confidence 799999976555 34444 677899999999998887 2 2479999998875432211 111 11245667777
Q ss_pred eEEEEecCCCCeEEEE--EcCCcceEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCC-ceEEEEeCCCCCc
Q 015198 187 SVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDG-TRLQEVRRGVDRA 262 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~-~~~~~~~~~~~~~ 262 (411)
..|+++...+|.+.|| +........+..+...+..+.|+|||+.|+.++ .++. ..||++... .....+ . +..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~ 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence 8888766677876664 555566677777777888999999999776554 5677 888876432 222223 2 322
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
....|+|||++|+..+.++ +.+||+.+++.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence 4578999999998887765 67799988763
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-12 Score=107.17 Aligned_cols=239 Identities=12% Similarity=0.137 Sum_probs=160.0
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc------eEEeec--CC---CCEEEEEEeccCCeEEE
Q 015198 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE------TFRRDL--KS---GGFRIVEMLFRCNILAL 102 (411)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~------~~~~~~--~~---~~~~~~~~~~~~~~~~l 102 (411)
.........|+++|+.++|. ..+|++|+||.|+=|......+ .++... +. .-..|.+|...|...-+
T Consensus 52 k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 33334458899999999999 4588888899999998764332 111111 11 11234556666543333
Q ss_pred EecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEE-cCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC----
Q 015198 103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKL-SRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL---- 174 (411)
Q Consensus 103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~---- 174 (411)
+.++.| +.++-||+++|+...+++ |...|.++.- +..++++. .||++++||.++++.++.+....++
T Consensus 130 ~~AgGD-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 130 LFAGGD-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred EEecCC-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 333344 999999999999999999 9999999988 66777776 8999999999999999888654322
Q ss_pred ----cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198 175 ----RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT 250 (411)
Q Consensus 175 ----~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~ 250 (411)
.++.+++.+. ..|++.| ...+.+|..........-.-.+++..+.|.. ..+++++..+. |.-|.+ .|.
T Consensus 205 p~~g~wigala~~e--dWlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gv 276 (325)
T KOG0649|consen 205 PDWGKWIGALAVNE--DWLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGV 276 (325)
T ss_pred cccCceeEEEeccC--ceEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccE
Confidence 2345555554 4677643 5678889887655444444566677777854 45777777777 999986 566
Q ss_pred eEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEE
Q 015198 251 RLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFS 289 (411)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd 289 (411)
....+... ....++..|+.. -++|-.++....+.|+.
T Consensus 277 l~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 277 LQANIPVE--STACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEEeccCC--ccceeeecccCCceEEEEecccceeeeeee
Confidence 65555553 224555555533 34566667777777763
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-13 Score=131.89 Aligned_cols=215 Identities=10% Similarity=0.041 Sum_probs=142.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-C---CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEec-CCCCCCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGA-GDNSQYPP 113 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~~~d 113 (411)
....|...+.+++|+|||+.|+..+ + ..|.+||+.+........+.++ .....|+|++..++.+ ..+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~----- 269 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKD----- 269 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecC-----
Confidence 3566788899999999999999876 3 3699999987543333323222 2357899998766554 334
Q ss_pred Ce--EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCc
Q 015198 114 TK--VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 114 ~~--i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
+. |.+||+.+++......+...+....|+||+..++ .++...+|++.. +.....+ .+.. ....++|++
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG 344 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADG 344 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCC
Confidence 54 5556777776544334666788999999998766 357777777643 2222223 2221 234567778
Q ss_pred eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC--CCCceEEEEeCCCCCcce
Q 015198 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT--VDGTRLQEVRRGVDRAEI 264 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~--~~~~~~~~~~~~~~~~~v 264 (411)
..|++.+ .++. .+|+........+..+ .....+.|+|+|++|+.++.++. +.+|++ .+|+.+..+.. +.+.+
T Consensus 345 ~~ia~~~-~~~i-~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~ 418 (429)
T PRK01742 345 KTLVMIN-GDNV-VKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQV 418 (429)
T ss_pred CEEEEEc-CCCE-EEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCC
Confidence 8887765 3544 4455554433333322 23456789999999999999998 887775 36788888876 66778
Q ss_pred EEEEeCCC
Q 015198 265 YSIALSPN 272 (411)
Q Consensus 265 ~~l~~spd 272 (411)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88999984
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=123.91 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=142.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCc----ceEEeecCCCCEEEEEEe---ccCCeEEEEecCCCCCCCCCeEEE
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEML---FRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
.+....++-.|++|+..-...+.+|+..... .+.+..+........++. -.+.+.-+..+-.- |.|.+
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~ 199 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL 199 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence 3445555556778877667778888876311 111122222222222221 12333333333222 88888
Q ss_pred EECCCCcEEEEEe-----ecCceeEEEEcCC--eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 119 WDDHQSRCIGEFA-----FRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 119 wd~~~~~~~~~~~-----~~~~i~~~~~~~~--~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
.|....+..+.+. .+..++++.|-|. +.+++ .+|.+++||.. +. ......++...+++..+
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~---~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IV---CGATAPSYQALKDGDQF 269 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------cc---ccCCCCcccccCCCCee
Confidence 8865533222222 4688999999874 44555 79999999961 11 11111122222222222
Q ss_pred EEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198 190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~ 269 (411)
+.--+ .......++..+..-.+.|..++|+|||++||+.+.||. +||||..+.+++..++. .-+...|++|
T Consensus 270 ~i~t~------ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW 340 (636)
T KOG2394|consen 270 AILTS------KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW 340 (636)
T ss_pred EEeee------eccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence 22100 011222555555556679999999999999999999999 99999999888777665 4567999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 270 SPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 270 spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
||||++|++|++|.-|.||.+..++..
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEE
Confidence 999999999999999999999988754
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.6e-11 Score=106.60 Aligned_cols=231 Identities=12% Similarity=0.185 Sum_probs=160.7
Q ss_pred CeEEEEEcCCCCEEEEEe-C--CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 46 ELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
.|--+-|+. .++|..+ + +.++++++.....+....+ +..+.++....+..+++- . ..|.|||++
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~L--e------e~IyIydI~ 114 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCL--E------ESIYIYDIK 114 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEE--c------ccEEEEecc
Confidence 344445543 4677666 3 3488888877666665543 455666666665544433 2 679999999
Q ss_pred CCcEEEEEe----ecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198 123 QSRCIGEFA----FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG 193 (411)
Q Consensus 123 ~~~~~~~~~----~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 193 (411)
+.+.++++. +...+.++.+++.+.+++ ..|.|++||+.+.+.+..+..|..+ +.+++++++|.+||+ +
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~--lAalafs~~G~llAT-A 191 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP--LAALAFSPDGTLLAT-A 191 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc--eeEEEECCCCCEEEE-e
Confidence 999999886 345677788888888888 5699999999999999999999884 455666667778876 5
Q ss_pred CCCCe-EEEEE-cCCcceEEEecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-------------------
Q 015198 194 LQRGQ-VRIEH-FGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------------------- 250 (411)
Q Consensus 194 ~~dg~-i~i~~-~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------------------- 250 (411)
++.|+ ||++. .+++.+..|..- ...|.+++|+|++++|++.+..++ |+||.+..-.
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk 270 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSK 270 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhh
Confidence 56666 56654 456777777533 456889999999999999999999 9999875411
Q ss_pred ------------------eEEEEeCCCCCc--ceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 251 ------------------RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 251 ------------------~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
...+.+.. ..+ .+..+.-.+...++.+++.||.++.|.+.-.+
T Consensus 271 ~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 271 AATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE 333 (391)
T ss_pred hhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence 00001110 011 22222222467889999999999999997653
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=1.7e-12 Score=128.10 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=168.5
Q ss_pred CCCCCccCcccCCC--CCCccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcce---EE--eecCCCCEEE
Q 015198 20 PNAGASASASASFG--HPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET---FR--RDLKSGGFRI 90 (411)
Q Consensus 20 ~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~---~~--~~~~~~~~~~ 90 (411)
|..|.+.+++.... -.+..++.+|...|..++.++.. .+|++|+ ||+|++|+....... .+ .........+
T Consensus 1022 p~~~~~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~ 1101 (1431)
T KOG1240|consen 1022 PSAWSVGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRV 1101 (1431)
T ss_pred CchhhcCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCce
Confidence 44554444333311 22445678899999999998765 9999999 999999998642211 11 1122233444
Q ss_pred EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-------EEEEEe--ecCceeEEE-EcCC-eE-EEE---EcCeEE
Q 015198 91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------CIGEFA--FRSDVRSVK-LSRD-RI-VVV---LEHKIY 155 (411)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-------~~~~~~--~~~~i~~~~-~~~~-~~-~~~---~dg~i~ 155 (411)
..+...+++..++.++.| |.|++.++.... +..... ..+.+.++. +... +. .++ ..+.|.
T Consensus 1102 ~~vt~~~~~~~~Av~t~D-----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKD-----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEEEeccCCCeEEEEcCC-----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 455555555566666776 999999976621 111111 234444443 3222 11 222 678999
Q ss_pred EEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-EEE-eccccceeEEEecCCC---CE
Q 015198 156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLI-NAHDSHIACFTLTLDG---LL 230 (411)
Q Consensus 156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~-~~~~~~i~~l~~sp~g---~~ 230 (411)
.||++.......++.......+..+..++.+.+++. |...|.+.+|+.+.+.. ... ..+..+|..+..+|-. ..
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence 999988776666654444345666777777777765 88899999999887543 222 2456788888777633 34
Q ss_pred EEEE-c-CCCeEEEEEECCCCceEEEEeCCC-----------------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 231 LATA-S-TRGTLIRIFNTVDGTRLQEVRRGV-----------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 231 l~s~-s-~dg~~I~vwd~~~~~~~~~~~~~~-----------------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
.+++ + ..+. |.+|++.+|.+...+.... +.-......+..-+.++.+|+.|..|+.||..
T Consensus 1256 ~vs~~~~~~ne-vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1256 SVSAGSSSNNE-VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EEEecccCCCc-eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 4444 4 4677 9999999997766665420 11111223333445688899999999999998
Q ss_pred ccccC
Q 015198 292 VRVVG 296 (411)
Q Consensus 292 ~~~~~ 296 (411)
..+..
T Consensus 1335 ~p~~s 1339 (1431)
T KOG1240|consen 1335 RPEIS 1339 (1431)
T ss_pred Ccccc
Confidence 87643
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.4e-12 Score=124.49 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=119.2
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.+||...+.......+...+.+..|+||+..++ . +..|++||+.+++... +..... ......+++++.
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCCC
Confidence 579999975544444344777899999999998777 1 3469999998876543 222222 223456667777
Q ss_pred EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCe-EEEEEECCCCceEEEEeCCCCCcc
Q 015198 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
.|+++.+.+| .|++++........+..+......++|+|||+.|+..+. ++. .|+++|+.+++... +.. +...
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~--~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF--QGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--CCCC
Confidence 7766554555 577788777777777766666678899999998887664 332 26677777766432 322 2223
Q ss_pred eEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198 264 IYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV 295 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~ 295 (411)
...++|+|||++|+..+.++ .|.+||+.+++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 45689999999998765443 599999977653
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7e-14 Score=123.15 Aligned_cols=191 Identities=15% Similarity=0.205 Sum_probs=141.5
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198 48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC 126 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~ 126 (411)
.+++|+++|..|++|+ ||.+|||++......+.. ..|+..|-++.|++|+.++++-+. ...+||++.++.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~lasig~------d~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFLASIGA------DSARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh--HhhcCccccceeCCCCcEEEEecC------CceEEEEeccCch
Confidence 7899999999999999 999999998765554443 378889999999999999999887 4899999999977
Q ss_pred EEEEe---ecCceeEEEEcCCe-----EEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 127 IGEFA---FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 127 ~~~~~---~~~~i~~~~~~~~~-----~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
+.... .+.....+.|+.|. .+++ ..+.|+.||+... +.++..+.-...-.+.+++.+.+|++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al- 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL- 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence 76665 34456677787766 2222 3566777766321 11111111111125677788888889887
Q ss_pred cCCCCeEEEEE-cCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198 193 GLQRGQVRIEH-FGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 193 g~~dg~i~i~~-~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
|+.||.|.|++ .+.+.++.. +.|...|+.+.|+|+.+++++.+.+.. +.|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 77899999954 444555544 579999999999999999999988888 88887643
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.4e-12 Score=122.37 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=142.2
Q ss_pred cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (411)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (411)
.|.+||.+...... +..+...+....|+|++..++..+.. .....|.+|++.+++..........+..+.|+|||
T Consensus 180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 57777776533222 22455567889999998766643211 01268999999888765544455566778999999
Q ss_pred EEEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE--EcCCcceEEEecccc
Q 015198 146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE--HFGLNMIKLINAHDS 217 (411)
Q Consensus 146 ~~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~ 217 (411)
..++ .++ .|++||+.+++..+.... .. ......++|++..|+++...++...|| +..+.....+..+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC--CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 8777 233 699999988765443322 22 334566677778887766555555554 455555555655555
Q ss_pred ceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc---EEEEEcc
Q 015198 218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLR 291 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~---I~vwd~~ 291 (411)
......|+|||++|+..+.+ .. |++||+.+++.. .+... . ......|+|||++|+.++.++. +.+++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 56778999999998876543 35 889999888653 34332 1 2346789999999999888764 6677774
Q ss_pred cc
Q 015198 292 VR 293 (411)
Q Consensus 292 ~~ 293 (411)
.+
T Consensus 407 G~ 408 (429)
T PRK03629 407 GR 408 (429)
T ss_pred CC
Confidence 43
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.55 E-value=4.8e-13 Score=127.22 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=162.1
Q ss_pred CCCCCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCe--EEEEecCCCCCCCC
Q 015198 42 VDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPP 113 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~d 113 (411)
.....|.|+.|+|....+ +.|. +|.|.+||+...... +......|...++.+.|..+- .-+++++.|
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD----- 314 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD----- 314 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC-----
Confidence 456789999999976555 5555 999999999865442 112224677788888876543 336677767
Q ss_pred CeEEEEECCCCcE-EEE-----E-------eecCceeEEEEcCC---eEEEE-EcCeEEEEEcCCce--------eeEEE
Q 015198 114 TKVIIWDDHQSRC-IGE-----F-------AFRSDVRSVKLSRD---RIVVV-LEHKIYVYSFVDLK--------LLHQI 168 (411)
Q Consensus 114 ~~i~vwd~~~~~~-~~~-----~-------~~~~~i~~~~~~~~---~~~~~-~dg~i~iwd~~~~~--------~~~~~ 168 (411)
|.|..|+++.-.. ... . .....+++++|.+. ..++. .+|.|+.-+....+ ....+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999998654322 111 1 12346778888653 33333 67888774432211 12234
Q ss_pred eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEE
Q 015198 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFN 245 (411)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd 245 (411)
..|..++..+...+-.. .++.+++ |.+++||... ..++..+..+...+++++|||-.. .++++..||. |.+||
T Consensus 395 ~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWD 470 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWD 470 (555)
T ss_pred cccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhh
Confidence 44555555444444333 3333343 8999998866 456667777888899999999764 7788888999 99999
Q ss_pred CCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 246 TVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 246 ~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
+.... ++.+... +....+.+.|+++|+.|++|...|++++|++...
T Consensus 471 Ll~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 96543 3444433 4456778889999999999999999999999754
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=6.4e-12 Score=119.53 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=116.1
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.++|...........+...+.+.+|+||++.++ . ...|++||+.+++... +..... ......++|++.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g--~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKG--SNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCC--CccceEECCCCC
Confidence 578888864433333344778899999999998777 2 2469999998886543 322222 233556677777
Q ss_pred EEEEecCCCCeEEEEE--cCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEE--ECCCCceEEEEeCCCCCc
Q 015198 188 VLACPGLQRGQVRIEH--FGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIF--NTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vw--d~~~~~~~~~~~~~~~~~ 262 (411)
.|+++.+.+|...||. ..+.....+..+........|+|||+.|+..+. ++. ..|| ++.+++.. .+.. ...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g~ 328 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TGS 328 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CCC
Confidence 7877666777766654 444555666666666677899999998876654 344 5555 44455432 2222 122
Q ss_pred ceEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198 263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~ 295 (411)
.....+|+|||++|+..+.++ .|.+||+.+++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 344678999999998777654 599999988763
No 210
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.1e-11 Score=110.34 Aligned_cols=238 Identities=13% Similarity=0.183 Sum_probs=161.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC-----CCCeEEEEE
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY-----PPTKVIIWD 120 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~-----~d~~i~vwd 120 (411)
++...+++++|+++|.+.+..++|++......++...+ . ...++.|+|-+.++.+-..-..+ ..-.+++|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~---~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL---K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc---c-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 37888999999999999999999999988664444322 2 78889999988888764332111 124678999
Q ss_pred CCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee-EEEeccCCCcceEEEccCCCceEEEE----
Q 015198 121 DHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSVLAC---- 191 (411)
Q Consensus 121 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---- 191 (411)
++++.....+. .... ++..|+.|..+.+ ..+.+++|++...+.+ +.+ +...+....+++.|....+|+
T Consensus 112 vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccC
Confidence 99976666665 2222 6899999999888 7899999998663322 222 233345556666554444432
Q ss_pred ecCCCCeEEEEEcC--------------------------C---------------------cceEEE----------ec
Q 015198 192 PGLQRGQVRIEHFG--------------------------L---------------------NMIKLI----------NA 214 (411)
Q Consensus 192 ~g~~dg~i~i~~~~--------------------------~---------------------~~~~~~----------~~ 214 (411)
.++.-+.|+||... + ..+..+ -.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 11222233333222 1 011111 12
Q ss_pred cccceeEEEecCCCCEEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEEEE
Q 015198 215 HDSHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFS 289 (411)
Q Consensus 215 ~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd 289 (411)
..++|.++.|+|+|+.+++ |-.-.. +.|||+ .++.+..+.. ++-+++-|+|.|++|+.++- .|.|.|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 3689999999999986654 556677 999997 6777777654 46688999999999998775 47899999
Q ss_pred ccccccC
Q 015198 290 LRVRVVG 296 (411)
Q Consensus 290 ~~~~~~~ 296 (411)
+.+.++.
T Consensus 343 v~n~K~i 349 (566)
T KOG2315|consen 343 VPNRKLI 349 (566)
T ss_pred ccchhhc
Confidence 9996643
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.8e-12 Score=123.74 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=139.6
Q ss_pred cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (411)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (411)
.|.+||.+.... .. +..+...+....|+|++..++..+.+. ....|.+||+.+++......+.+...+..|+||+
T Consensus 185 ~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCCCCc-eE--eecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 477788764322 22 224555678889999987766554320 1257999999888765444455566688999999
Q ss_pred EEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCCcceEEEecccc
Q 015198 146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDS 217 (411)
Q Consensus 146 ~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~ 217 (411)
..++ .+ ..|++||+.+++.. .+..+.. ......+++++..|+++...+|. |++++........+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 8665 23 36999999887654 3333322 22345667777788776655555 4445554444555544444
Q ss_pred ceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEcc
Q 015198 218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR 291 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~ 291 (411)
....++|+|+|++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 555789999999988765432 5 999999888764 3332 1234567899999988876653 357777775
Q ss_pred cc
Q 015198 292 VR 293 (411)
Q Consensus 292 ~~ 293 (411)
.+
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.9e-13 Score=128.52 Aligned_cols=243 Identities=16% Similarity=0.192 Sum_probs=163.0
Q ss_pred CCCCeEEEEEcC--CCCEEEEEe-CCcEEEEecCCCc-c--eEEeec-------CCCCEEEEEEeccC-CeEEEEecCCC
Q 015198 43 DEIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFK-E--TFRRDL-------KSGGFRIVEMLFRC-NILALVGAGDN 108 (411)
Q Consensus 43 h~~~V~~l~~s~--~g~~la~g~-dg~i~iw~~~~~~-~--~~~~~~-------~~~~~~~~~~~~~~-~~~~l~s~~~d 108 (411)
....|+.+.+-. |..++++|+ ||.|+||+--... + .+.... ......-.-+.|.. .|.++++|+-
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence 345688888854 456788888 9999999753221 1 111100 01111113344554 5666666654
Q ss_pred CCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEE
Q 015198 109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCC 179 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 179 (411)
..|+|||....+.+..+. ....|+++.-+- .|..++ .||.|++||.+.. ..+..++.|...-.++.
T Consensus 1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 899999999988888887 355666666443 245554 7999999998653 34566677776533555
Q ss_pred EccCCCceEEEEecCCCCeEEEEEcCCcce---EEEeccc--c-ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198 180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHD--S-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~~~~~--~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (411)
++..+.|.-=+++|+.+|.|++|+.+.... ..+..|. + ..+++..+++...+|+|+. +. |+||++ .|+.+.
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQLN 1338 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhhc
Confidence 554443322223588999999999887322 2233343 3 5899999999999999998 77 999997 555554
Q ss_pred EEeCC-----CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 254 EVRRG-----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 254 ~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.++.. ...+.+.+++|+|..-+||+|+.|.+|.||....+.
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 44421 123467999999998899999999999999887654
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.3e-12 Score=109.75 Aligned_cols=148 Identities=13% Similarity=0.157 Sum_probs=102.0
Q ss_pred EEEEcCCeEEEE---E----------cCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEE-EecCCCCeEEEE
Q 015198 138 SVKLSRDRIVVV---L----------EHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLA-CPGLQRGQVRIE 202 (411)
Q Consensus 138 ~~~~~~~~~~~~---~----------dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~dg~i~i~ 202 (411)
.+.|+++|..++ . -+...+|.++ .......+...... .+..++|+|++..+| +.|..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~-~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG-PIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC-ceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 456667666555 1 1234444442 22334444433221 255666666655543 446677899999
Q ss_pred EcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198 203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (411)
+.+.+.+..+. ...++.+.|+|+|++|++++. .|. |.+||+++.+.+.+.. |. .+..++|+|||++|+++
T Consensus 89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEEE
Confidence 99877776664 567789999999999998863 477 9999999888877665 33 47899999999999988
Q ss_pred eC------CCcEEEEEcccc
Q 015198 280 SD------KGTVHIFSLRVR 293 (411)
Q Consensus 280 s~------dg~I~vwd~~~~ 293 (411)
.. |+.++||++...
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EeccceeccccEEEEEecCe
Confidence 74 788999999643
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-11 Score=116.66 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=120.0
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.+||...........+...+...+|+|||+.++ .+..|++|++.+++...... ... ......++|++.
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~--~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR--HNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC--CcCCeEECCCCC
Confidence 589999977655544445677899999999998887 13579999998875433222 112 122456677777
Q ss_pred EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCcc
Q 015198 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
.|+++...+| .|++|+........+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+.. ....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~ 332 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQ 332 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence 8877655555 4777777776666676666678899999999988776654 33 1555677666543 3333 2334
Q ss_pred eEEEEeCCCCCEEEEEeCC---CcEEEEEccccc
Q 015198 264 IYSIALSPNVQWLAVASDK---GTVHIFSLRVRV 294 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~ 294 (411)
.....|+|||++|+..+.+ ..|.+||+.+++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 5678999999999876543 358889988775
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9.3e-12 Score=118.93 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=142.9
Q ss_pred cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (411)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (411)
.|.++|.+.... .. +..+...+....|+|++..++..+.. ..+..|.+||+.+++......+.+.+....|+|||
T Consensus 183 ~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~--~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYA--NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEec--CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 566666654322 22 22455678889999998766654321 01278999999888765444467778889999999
Q ss_pred EEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEecccc
Q 015198 146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS 217 (411)
Q Consensus 146 ~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~ 217 (411)
..++ .+ ..|++||+.+++.. .+..+.. ......+++++..|+++...+| .|++++..+.....+..+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 8765 23 45888898877653 3433332 2234556667777777654444 56667777766666665566
Q ss_pred ceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC------CcEEEE
Q 015198 218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK------GTVHIF 288 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d------g~I~vw 288 (411)
.+....|+|+|+.|+....+ .. |.+||+..+.. ..+.. ...+..+.|+|||++|+..+.+ ..++++
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 67778999999998876543 25 88899865543 34432 2246778999999998765543 257777
Q ss_pred Ecccccc
Q 015198 289 SLRVRVV 295 (411)
Q Consensus 289 d~~~~~~ 295 (411)
++..++.
T Consensus 410 dl~g~~~ 416 (435)
T PRK05137 410 DLTGRNE 416 (435)
T ss_pred ECCCCce
Confidence 8766543
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4e-12 Score=111.11 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=170.6
Q ss_pred cCCCCCCeEEEEEcCCCC--EEEEEe-CCcEEEEecCCCcceEEe----ecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 40 SDVDEIELISVSWNQDYG--CFAAGT-SCGFRIYNCEPFKETFRR----DLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~--~la~g~-dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
.......|..++|.-+++ .|...+ +..+..+.+......... ........|..+.......+ .+ -.+
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Li-tc-~~s---- 124 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLI-TC-VSS---- 124 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEE-EE-ecC----
Confidence 445667889999987654 344443 667777766543322221 12234444555544433333 33 333
Q ss_pred CCeEEEEECCCCc----EEEEEeecCceeEEEEcCCeEEEE----Ec--CeEEEEEcCCceeeEEEeccC-------CCc
Q 015198 113 PTKVIIWDDHQSR----CIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLA-------NLR 175 (411)
Q Consensus 113 d~~i~vwd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~----~d--g~i~iwd~~~~~~~~~~~~~~-------~~~ 175 (411)
|.+.+|..+.+. .+..+.....+..+.-++....++ .. ..+.+||++..+.+..-+... -++
T Consensus 125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 999999987543 344455566777777777666665 23 568999998875554433221 234
Q ss_pred ceEEEccCCC--ceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198 176 GLCCLSHHSS--TSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (411)
Q Consensus 176 ~~~~~~~~~~--~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (411)
+...+.|-+. ...+|. +..-+.+++|+... +++..+.--+.+|+++...|+|++|++|..-+. +..||++.++.
T Consensus 204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl 281 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL 281 (412)
T ss_pred eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence 4444444433 444543 56789999987654 678888888999999999999999999999999 99999999998
Q ss_pred EEE-EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 252 LQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 252 ~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
+.. +.+ -.+.|.+|..+|.+++|++++-|..|+|+|+++.+-
T Consensus 282 ~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 282 LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 776 555 678999999999999999999999999999999553
No 217
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.48 E-value=2.5e-12 Score=118.72 Aligned_cols=177 Identities=12% Similarity=0.112 Sum_probs=128.8
Q ss_pred CeEEEEECCCCc-----EEEEEeecCceeEEEEcC-C-eEEEE--EcCeEEEEEcCCc-------eeeEEEeccCCCcce
Q 015198 114 TKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-D-RIVVV--LEHKIYVYSFVDL-------KLLHQIETLANLRGL 177 (411)
Q Consensus 114 ~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~-~-~~~~~--~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~ 177 (411)
|.|-||++..-. .+-.+.....|+.+.|+| | .++.+ .||.|++|.+..+ .....+..|...+..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 899999986532 233444678899999998 3 23333 8999999998543 344567778775555
Q ss_pred EEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEE
Q 015198 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV 255 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~ 255 (411)
+.|++-.. ..|+ +++.|-+|++|+... +....+.+|.+.|..++|+|+|+.+|+.+.||. |++|+-++++. +++-
T Consensus 683 lRfHPLAa-dvLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 683 LRFHPLAA-DVLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEecchhh-hHhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence 55555432 2333 467899999998765 556678999999999999999999999999999 99999887754 3332
Q ss_pred eCCCCCcceEEEEeCCCCCEEEEEeCCC----cEEEEEccccc
Q 015198 256 RRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRV 294 (411)
Q Consensus 256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~ 294 (411)
.+. -...--.|.|--||+++++.+.|. .|.+||.++-.
T Consensus 760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 221 122345678888999998887764 58888876644
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.5e-11 Score=114.97 Aligned_cols=174 Identities=9% Similarity=0.029 Sum_probs=121.0
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.++|...........+...+....|+|||+.++ .+..|++||+.+++.. .+..... ......++|++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCCC
Confidence 589999975554443334778999999999998777 2468999999887653 3333333 233455667777
Q ss_pred EEEEecCCCCe--EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-C--CeEEEEEECCCCceEEEEeCCCCCc
Q 015198 188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-R--GTLIRIFNTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vwd~~~~~~~~~~~~~~~~~ 262 (411)
.|+++.+.++. |++++..+.....+..+........|+|||+.|+..+. + .. |+++|+..++.. .+.. +..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence 77766656655 55567777777777777777778999999998887664 2 25 888898766543 3433 234
Q ss_pred ceEEEEeCCCCCEEEEEeCC---CcEEEEEccccc
Q 015198 263 EIYSIALSPNVQWLAVASDK---GTVHIFSLRVRV 294 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~ 294 (411)
.+....|+|||++|+....+ ..|.+||+..+.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 56678899999999876653 257788875443
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.2e-13 Score=121.84 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=138.9
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCC
Q 015198 34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQ 110 (411)
Q Consensus 34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~ 110 (411)
..+...+.||.+.|+|+.|+.+|.+|++|+ |-.+.|||.-..+...... .+|...|.+..|-| +..++++|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCc--
Confidence 345567899999999999999999999999 8999999987544444443 37788888888776 56788888877
Q ss_pred CCCCeEEEEECCCC----------cEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee-------EEE
Q 015198 111 YPPTKVIIWDDHQS----------RCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-------HQI 168 (411)
Q Consensus 111 ~~d~~i~vwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~-------~~~ 168 (411)
..|+++|+... +....+. |...|..++..|++..++ .||+|+-||++....- ..+
T Consensus 117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999998741 1222233 778888888888774333 8999999999753111 000
Q ss_pred -eccCCCc--ceEEEccCCCceEEEEecCCCCeEEEEEcCC-------------------cceEEE-eccc---------
Q 015198 169 -ETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------------------NMIKLI-NAHD--------- 216 (411)
Q Consensus 169 -~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------------------~~~~~~-~~~~--------- 216 (411)
.-+..-+ .++.+++. ..+.++.|+.|-..++++.+. .++..+ .+|-
T Consensus 194 ~ny~~~lielk~ltisp~--rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPS--RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR 271 (758)
T ss_pred HHhchhhheeeeeeecCC--CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence 0111112 34445554 333334477888888877321 122222 1221
Q ss_pred --cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198 217 --SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (411)
Q Consensus 217 --~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (411)
..++-++|+|+|..|+..-.... |+++|+..++.
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~ 307 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKS 307 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCC
Confidence 12556789999987665544445 99999976653
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.9e-12 Score=118.54 Aligned_cols=196 Identities=15% Similarity=0.075 Sum_probs=125.5
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCe--EEEEE
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK--IYVYS 158 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~--i~iwd 158 (411)
.+...+....|+|++..++..+.+ .....|.+||+.+++........+.+....|+||+..++ .++. |+++|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~--~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFE--SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEcc--CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 445567788999998776654432 012579999999887655444566677899999997765 3555 55555
Q ss_pred cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEEcC
Q 015198 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATAST 236 (411)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 236 (411)
+..++ ...+..+.. ......+++++..|++++..+|...||.. .+.....+..+.......+|+|||++|+..+.
T Consensus 271 ~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 55444 334433332 22334566777778776655566666544 33344444333344456889999999987665
Q ss_pred CC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEc
Q 015198 237 RG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL 290 (411)
Q Consensus 237 dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~ 290 (411)
++ . |.+||+.+++.. .+... .......|+|||+.|+.++.++ .+++.++
T Consensus 348 ~~g~~~-I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 348 VGGAFK-LYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCCcEE-EEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 53 5 999999888754 33321 2346789999999988777554 2455555
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1e-10 Score=108.10 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=121.7
Q ss_pred CCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198 56 YGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR 133 (411)
Q Consensus 56 g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~ 133 (411)
++++++.. ++.|.|.|.++.+.+.... .+......+.+++++.++...+.| +.|.++|+.+++.+.+++..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence 34555444 8999999999866555544 233334556788988666555666 99999999999999999988
Q ss_pred CceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCC-----cceEEEccCCCceEEEEecCCCCeEEEEEc
Q 015198 134 SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL-----RGLCCLSHHSSTSVLACPGLQRGQVRIEHF 204 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~ 204 (411)
....++++++||++++ ..+.+.++|.++.+.++.+.....+ ..+.++..++....++++--+.+.|.+-+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 8889999999999887 6899999999999999988654321 134445444444544444445577777443
Q ss_pred CC-cceE-EEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEE
Q 015198 205 GL-NMIK-LINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 205 ~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~ 255 (411)
.. +.+. .............|+|++++++.+ ...+. |-++|..+++.+..+
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI 210 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence 32 2222 222334556778999999987664 44555 888888876655443
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.46 E-value=6.6e-11 Score=101.41 Aligned_cols=236 Identities=10% Similarity=0.090 Sum_probs=160.0
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEE
Q 015198 44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd 120 (411)
-+.|..+.|..|..+++++. ++.|.+|++...+-..+ +..+..++....|+|++ .++.+...+ -.|.||.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~agls~~~WSPdgrhiL~tseF~-----lriTVWS 120 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQAGLSSISWSPDGRHILLTSEFD-----LRITVWS 120 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--eccCCCcceeeeECCCcceEeeeecce-----eEEEEEE
Confidence 46788899999998888777 88999999985454443 45888999999999999 455555655 8999999
Q ss_pred CCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec-----------------------------------CeEEEEEcCC
Q 015198 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE-----------------------------------HKIYVYSFVD 161 (411)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d-----------------------------------g~i~iwd~~~ 161 (411)
+.+.+....--.+..+..++|+|||++.+ .| +.+.+||.--
T Consensus 121 L~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L 200 (447)
T KOG4497|consen 121 LNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL 200 (447)
T ss_pred eccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence 88877655443566678888888887765 11 2233333110
Q ss_pred ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-----EEcCC------------------------------
Q 015198 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGL------------------------------ 206 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-----~~~~~------------------------------ 206 (411)
.-.+..+ ....++...+++|.+++|++ |+.|+.+++ |..-+
T Consensus 201 eykv~aY---e~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 201 EYKVYAY---ERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred hheeeee---eeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 0000111 11124445566666678876 889998887 22111
Q ss_pred --------------------------cceEEEe------ccccceeEEEecCCCCEEEEEcCC--CeEEEEEECCCCceE
Q 015198 207 --------------------------NMIKLIN------AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRL 252 (411)
Q Consensus 207 --------------------------~~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~ 252 (411)
..+..++ .....+.-++|++|..++++-... +. +.+||++..+.-
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna-lW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA-LWLWDLQNLKLH 355 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce-EEEEechhhhhh
Confidence 0001111 112346678999999999986543 45 999999887765
Q ss_pred EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
..+.. ..+|....|.|....|+.+.....+++|......
T Consensus 356 avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 356 AVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred hhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 55553 4479999999999899988888889999876643
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=6.7e-11 Score=102.60 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=160.0
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEeCCcEEEEecCCCcceEE-----------eecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198 42 VDEIELISVSWNQD-YGCFAAGTSCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRCNILALVGAGDNS 109 (411)
Q Consensus 42 ~h~~~V~~l~~s~~-g~~la~g~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 109 (411)
.....|+|++|-|. ++-|++|..+.|.||..+.-...-+ .--+.++..+..|.|.+++..+++++.+
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g- 216 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG- 216 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC-
Confidence 34567999999997 5678888899999998763111100 0013566889999999999999988764
Q ss_pred CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (411)
+..|.|||..++..+.... ..+.+.-+.|+||+.+++ -|+..++|+.....-..........+...++ +|.
T Consensus 217 ---sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacW--spc 291 (445)
T KOG2139|consen 217 ---SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACW--SPC 291 (445)
T ss_pred ---cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeee--cCC
Confidence 6899999999998877664 678889999999998887 6999999965433222222223333444444 455
Q ss_pred ceEEEEecCCCCeEEEEEcCCc-----------ceEE---------Eec---cccceeEEEecCCCCEEEEEcCCCe---
Q 015198 186 TSVLACPGLQRGQVRIEHFGLN-----------MIKL---------INA---HDSHIACFTLTLDGLLLATASTRGT--- 239 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i~~~~~~-----------~~~~---------~~~---~~~~i~~l~~sp~g~~l~s~s~dg~--- 239 (411)
|.+|.++.+..-.++--...++ .+.. ..+ -.+++.+++|.|.|.+||+.-..+.
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~ 371 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL 371 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh
Confidence 5566555443333332111110 0000 011 2467889999999999998654432
Q ss_pred ----EEEEEECCCCceEEEEe-CCCCCcceEEEEeCC---CCCEEEEEeCCCcEEEEEccccc
Q 015198 240 ----LIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSP---NVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 240 ----~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.|.+||.+..-.+.-.. +........-|+|+| ++.+|..+-..|.|.-|++.-..
T Consensus 372 ~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~ 434 (445)
T KOG2139|consen 372 LCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQC 434 (445)
T ss_pred hhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEEe
Confidence 26678876544332221 111111244566665 67888889899999988886543
No 224
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.2e-11 Score=108.17 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=163.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
...|...|.|++|+..++.|.+|. +++|.+.|+++.+.+....-......+..+..+|....+++.+.+ +.|.+
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~~ 175 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-----KLVSF 175 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC-----ceEEE
Confidence 345668999999999999999999 999999999987666554333444578888888877777777777 99999
Q ss_pred EECCCCc----EEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCcee-eEEEe---c-cCCCcceEEEccCCC
Q 015198 119 WDDHQSR----CIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-LHQIE---T-LANLRGLCCLSHHSS 185 (411)
Q Consensus 119 wd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~ 185 (411)
||.+... .+..-........+.|+|....++ ..+.+-+||++..+. +.... + ......-+...|++.
T Consensus 176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 9977654 333333677888999999765554 567899999864321 11111 1 111112234445555
Q ss_pred ceEEEEecCCCCeEEE-EEcCCcceEEEec-cc-------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------
Q 015198 186 TSVLACPGLQRGQVRI-EHFGLNMIKLINA-HD-------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------- 249 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~-~~-------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------- 249 (411)
|..+.+. .-+..-+ ++.-.+.+..++. |. ..+.+++|.-|-. +++|+.+-. |++|.+...
T Consensus 256 G~Q~msi--RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 256 GNQFMSI--RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSYGFT 331 (609)
T ss_pred CCeehhh--hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCccccCcc
Confidence 5555432 3333333 4444433333332 22 2466777765544 899999988 999987531
Q ss_pred ----------------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 250 ----------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 250 ----------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+.+..+++ |...++.+.|+|...+|++.+-.+.++||.-.
T Consensus 332 ~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 332 QIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheeccccc
Confidence 12345666 88899999999999999999999999999643
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=6.4e-11 Score=109.48 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
-..+.|+|||+++++.+ ||.|.++|+.+.+.+.... -......+.+++++.+++.+... ++.+.++|.++.+
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 34578999999999989 9999999999877555543 23346678888888766655432 3999999999999
Q ss_pred EEEEEee--------cCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEE
Q 015198 126 CIGEFAF--------RSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 126 ~~~~~~~--------~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
.++.+.. ...+.++..++.+. +++ ..+.|.+.|..+.+.+ ..+.... ......+++++++++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeee
Confidence 9998862 23567787777766 444 3488888887665433 2333222 2334555566665544
Q ss_pred ecCCCCeEEEEEcCC--------------------------------------------------------cceEEEecc
Q 015198 192 PGLQRGQVRIEHFGL--------------------------------------------------------NMIKLINAH 215 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~--------------------------------------------------------~~~~~~~~~ 215 (411)
+...+..|.+.+... +.++.+...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 333333444332221 122333333
Q ss_pred ccceeEEEecCCCCEEEEE----cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC--cEEEEE
Q 015198 216 DSHIACFTLTLDGLLLATA----STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFS 289 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~----s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~I~vwd 289 (411)
..+ .-+..+|+++++.+. ...+. |.++|.++.+.+.++... ....+..+.|++||+.+..+..++ .|.|||
T Consensus 269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 333 456679999999987 34466 999999999887777532 112489999999999776554433 699999
Q ss_pred ccccccCC
Q 015198 290 LRVRVVGE 297 (411)
Q Consensus 290 ~~~~~~~~ 297 (411)
..+.+...
T Consensus 346 ~~Tl~~~~ 353 (369)
T PF02239_consen 346 AKTLKEKK 353 (369)
T ss_dssp TTTTEEEE
T ss_pred CCCcEEEE
Confidence 99998764
No 226
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.7e-12 Score=117.09 Aligned_cols=212 Identities=14% Similarity=0.139 Sum_probs=146.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------ceEEeecCCCCEEEEEEeccCCeEEEEecCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 108 (411)
-...+|.++|.|+++.++++.+.+|+ ||+|+.|++.... ..+...+.+|...+..+.++.....|++++.|
T Consensus 338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD 417 (577)
T ss_pred EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence 45789999999999999999999999 9999999764211 12333455888888899999988889999988
Q ss_pred CCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE-EcCeEEEEEc---CCceeeEEEeccCC--C---cc
Q 015198 109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSF---VDLKLLHQIETLAN--L---RG 176 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~dg~i~iwd~---~~~~~~~~~~~~~~--~---~~ 176 (411)
|++++|+...... .++. ..+.-.++.+-....... .+.....+++ .....+..+..... + ..
T Consensus 418 -----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 418 -----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred -----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 9999999766655 3443 222333444433332222 3444444444 33333333322111 1 12
Q ss_pred eEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
+..+..++...+. +++..|+.|++ +...+..+.....|...++++++.|+|-+|++++.|+. +++|.+....++...
T Consensus 492 in~vVs~~~~~~~-~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es 569 (577)
T KOG0642|consen 492 INKVVSHPTADIT-FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES 569 (577)
T ss_pred cceEEecCCCCee-EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence 2233334444444 45679999999 66778888999999999999999999999999999999 999998776666555
Q ss_pred eC
Q 015198 256 RR 257 (411)
Q Consensus 256 ~~ 257 (411)
..
T Consensus 570 ~~ 571 (577)
T KOG0642|consen 570 TA 571 (577)
T ss_pred cc
Confidence 44
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=4.3e-11 Score=100.58 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=77.9
Q ss_pred eEEEccCCCceEEEEecC---------CCCeEEE--EEcCCcceEEEec-cccceeEEEecCCCCEEEE--EcCCCeEEE
Q 015198 177 LCCLSHHSSTSVLACPGL---------QRGQVRI--EHFGLNMIKLINA-HDSHIACFTLTLDGLLLAT--ASTRGTLIR 242 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~---------~dg~i~i--~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s--~s~dg~~I~ 242 (411)
.+.+.|+++|.+|++... .-+...| .+........+.. ..++|.+++|+|+|+.||+ |..+.. |.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cE
Confidence 455666666666654332 1123333 2233444555543 3457999999999998654 445677 99
Q ss_pred EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEccccccC
Q 015198 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVVG 296 (411)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~ 296 (411)
+||++ ++.+..+.. ..+..+.|+|+|++|++++.+ |.|.+||+++.+..
T Consensus 87 lyd~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 87 LYDVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred EEcCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 99995 777766653 367889999999999998754 66999999976654
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.6e-12 Score=115.21 Aligned_cols=208 Identities=14% Similarity=0.151 Sum_probs=146.2
Q ss_pred eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCC--eEEEE---EcCe
Q 015198 81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRD--RIVVV---LEHK 153 (411)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~dg~ 153 (411)
.++.+|...+.++.|+.+|.+|++|++| -.+.|||....+.+..+. |...|.++.|-|. ..+++ .|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 3456889999999999999999999998 999999999999999887 8999999999883 34444 7999
Q ss_pred EEEEEcCCc----------eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceE---------EE
Q 015198 154 IYVYSFVDL----------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK---------LI 212 (411)
Q Consensus 154 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~---------~~ 212 (411)
|++||+... +....+..|...+.-+ +..+.+...+.++++||+|+-++.+.. +.. .+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri--a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI--ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhhe--ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 999999641 2333445555544444 444444445556779999999776541 111 11
Q ss_pred eccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCC--------Cc----------eEEEEeCCCC----------Ccc
Q 015198 213 NAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--------GT----------RLQEVRRGVD----------RAE 263 (411)
Q Consensus 213 ~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--------~~----------~~~~~~~~~~----------~~~ 263 (411)
...--...++.++|.. .+|++|+.|-. .++||.+. +. ++..+..++- ...
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence 1222356788999865 48899999999 99999431 11 2222222111 012
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
++-+.|+|+|.-|++.-....|+++|+..++..
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 567899999987776666667999999988754
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.7e-10 Score=110.00 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=119.6
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.++|...+.......+...+....|+||++.++ . ...|++||+.+++..... ..... .....+++++.
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~--~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGM--NGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCC--ccceEECCCCC
Confidence 578899976554444444666788999999999887 1 257999999887654332 22222 23345566676
Q ss_pred EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCc
Q 015198 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~ 262 (411)
.|+++.+.++ .|++++........+..+........|+|+|+.|+..+..+ . |+++|+.+++.. .+.. +..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCC
Confidence 6766554444 46667777666666666665566789999999887665432 5 888898777653 3333 334
Q ss_pred ceEEEEeCCCCCEEEEEeCCC---cEEEEEccccc
Q 015198 263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV 294 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~ 294 (411)
.+..+.|+|+|++|+.++.++ .|.+||+.++.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 567889999999999888775 78888887754
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.8e-09 Score=93.09 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=167.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe----CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT----SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~----dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
.+.-.+.+.++-|+|+|++++|.++. +|.|.-|.++.. ...+.............++.++++.+++++..
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY---- 108 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY---- 108 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc----
Confidence 34567788899999999999998876 578888888863 22222111112222256677788877776543
Q ss_pred CCCeEEEEECCC-Cc---EEEEEeecCc----------eeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEecc-C
Q 015198 112 PPTKVIIWDDHQ-SR---CIGEFAFRSD----------VRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETL-A 172 (411)
Q Consensus 112 ~d~~i~vwd~~~-~~---~~~~~~~~~~----------i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~-~ 172 (411)
..+.|.++-+.. |. .+..+.|.+. +....+.|++++++ .-..|.+|++..|++...-... .
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 459999999865 43 2344456555 88889999998888 4578999999877654322111 1
Q ss_pred CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEecc---------ccceeEEEecCCCCEEEEEcCCCeEE
Q 015198 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAH---------DSHIACFTLTLDGLLLATASTRGTLI 241 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~---------~~~i~~l~~sp~g~~l~s~s~dg~~I 241 (411)
.......+.++|++++..+..--+++|.+|..+. ..+..++.+ ......|.+++||++|.++..--..|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 1224455666677777766677899999987765 333333322 34567889999999999876543348
Q ss_pred EEEECCCC-ceEEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCC-cEEEEEccccc
Q 015198 242 RIFNTVDG-TRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV 294 (411)
Q Consensus 242 ~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~ 294 (411)
.+|.+... ..+..+. ...+......+.|++.|++|+++..++ .|.+|.++...
T Consensus 269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 88876533 2222222 111333578999999999999888765 69999887544
No 231
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=1.2e-10 Score=99.46 Aligned_cols=159 Identities=13% Similarity=0.157 Sum_probs=124.9
Q ss_pred ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-
Q 015198 132 FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF- 204 (411)
Q Consensus 132 ~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~- 204 (411)
...+|++.+|++|+..++ ....|.||..... +..+++..|...+..+++++. ...|+ +++.|..-++|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIv-tcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIV-TCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCcee-EccCCCCccccccC
Confidence 578999999999999888 5678999987543 567888888886666555554 44455 4779999999987
Q ss_pred CC---cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE---EEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198 205 GL---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAV 278 (411)
Q Consensus 205 ~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s 278 (411)
.+ ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...-- +.++ ..++..|++++|+|++-+|++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence 33 456677789999999999999999999999988 999977543321 1122 226678999999999999999
Q ss_pred EeCCCcEEEEEcccccc
Q 015198 279 ASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 279 ~s~dg~I~vwd~~~~~~ 295 (411)
|+.|+..+||..--+..
T Consensus 164 Gs~D~k~rVfSayIK~V 180 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGV 180 (361)
T ss_pred cccCcceeEEEEeeecc
Confidence 99999999998766543
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=1.4e-10 Score=115.01 Aligned_cols=212 Identities=10% Similarity=0.096 Sum_probs=144.7
Q ss_pred ceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCC-------CcEEEEEe-ecCceeEEEEcCCeEE
Q 015198 77 ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIV 147 (411)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~ 147 (411)
..+..+++.|...+..++.++. +.++++|+.| |+|++||... .+...++. ....+.++...+.+..
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 3455567788888888776654 4899999998 9999999643 12333444 5778888888887776
Q ss_pred EE---EcCeEEEEEcCCc--e-----eeEEEeccCCCcce--EEEccCCCceEEEEecCCCCeEEEEEcCCcce---EEE
Q 015198 148 VV---LEHKIYVYSFVDL--K-----LLHQIETLANLRGL--CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLI 212 (411)
Q Consensus 148 ~~---~dg~i~iwd~~~~--~-----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~ 212 (411)
++ .||.|++.+++.. + +.+....+.....+ .++........+++ +...+.|..|+...... ...
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhc
Confidence 66 7999999998652 1 11222222222211 12222223324444 44666777787765332 222
Q ss_pred eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC---CEEEEEe--CCCcEEE
Q 015198 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV---QWLAVAS--DKGTVHI 287 (411)
Q Consensus 213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s--~dg~I~v 287 (411)
....+.|++++.+|.+.++++|+..|. +.+||++-+.++..+.-. +..+|..+..+|-. ...++++ ..+.|.+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 345688999999999999999999999 999999999998888755 44688888877643 3555444 4678999
Q ss_pred EEccccccC
Q 015198 288 FSLRVRVVG 296 (411)
Q Consensus 288 wd~~~~~~~ 296 (411)
|++.+|.+.
T Consensus 1270 wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1270 WNMETGLRQ 1278 (1431)
T ss_pred eecccCcce
Confidence 999999654
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=2.6e-09 Score=98.85 Aligned_cols=241 Identities=19% Similarity=0.165 Sum_probs=150.7
Q ss_pred CCCeEEEEEcCCCCEEEEEe-C----CcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 44 EIELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~-d----g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
......++++|++++|.+.. . +.|..|.++.. .................+..++++.+++.+.. ..+.|
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany----~~g~v 111 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY----GGGSV 111 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET----TTTEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc----cCCeE
Confidence 34456788999999999887 3 57888888764 22122222123334455667777665555432 23999
Q ss_pred EEEECCC-CcEEEE---Eee-----------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCce--e--eEEEeccCC
Q 015198 117 IIWDDHQ-SRCIGE---FAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--L--LHQIETLAN 173 (411)
Q Consensus 117 ~vwd~~~-~~~~~~---~~~-----------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~--~--~~~~~~~~~ 173 (411)
.++++.. +..... +.+ .....++.++|++++++ ....|++|++.... + ...+....
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~- 190 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP- 190 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-
Confidence 9999877 433322 222 24567899999988776 35789999996644 3 22333222
Q ss_pred CcceEEEccCCCceEEEEecCCCCeEEEEEcC--Cc---ceEEEecc------ccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198 174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LN---MIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIR 242 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~---~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~ 242 (411)
......+.++++++++.+....++.|.++... .. .+..+... ......|+++|||++|+++......|.
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 23455666777777777777788899986555 22 22222211 125678999999999887765443499
Q ss_pred EEECC--CCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198 243 IFNTV--DGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR 291 (411)
Q Consensus 243 vwd~~--~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~ 291 (411)
+|++. ++++ +..+.. .....+.++++|+|++|+++. .++.|.+|+++
T Consensus 271 vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99983 3443 333333 233579999999999999877 45689999885
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-10 Score=100.43 Aligned_cols=244 Identities=11% Similarity=0.197 Sum_probs=152.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---eEEeecCCCC------------EEEEEEeccCC--e-EEEE
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGG------------FRIVEMLFRCN--I-LALV 103 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~--~-~~l~ 103 (411)
..+-|.++.|...|.+||+|. +|.|.+|.-+.... .+...++.|. ..+..+.|.++ . .+++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999999 99999997654332 1112221221 12334455543 3 3444
Q ss_pred ecCCCCCCCCCeEEEEECCCCc-----------------------------------EEEEEe--ecCceeEEEEcCCeE
Q 015198 104 GAGDNSQYPPTKVIIWDDHQSR-----------------------------------CIGEFA--FRSDVRSVKLSRDRI 146 (411)
Q Consensus 104 s~~~d~~~~d~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~i~~~~~~~~~~ 146 (411)
++. | .+|++|.+.... +.+.+. |.-.|+++.++.|..
T Consensus 104 stN-d-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 104 STN-D-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ecC-C-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 443 3 999999864321 111222 556789999999988
Q ss_pred EEE--EcCeEEEEEcCCc-eeeEEEeccC-------CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-----ceEE
Q 015198 147 VVV--LEHKIYVYSFVDL-KLLHQIETLA-------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-----MIKL 211 (411)
Q Consensus 147 ~~~--~dg~i~iwd~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-----~~~~ 211 (411)
.+. .|=.|.+|+++-- +......... ..++...|+|...+ ++++ .+..|+|++-+.+.. ..+.
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~Y-SSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVY-SSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEE-ecCCCcEEEeechhhhhhcchhhh
Confidence 777 6788999998532 2222222211 12333445554433 4455 347899999554421 1111
Q ss_pred Ee------------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCC----------Ccc---eE
Q 015198 212 IN------------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVD----------RAE---IY 265 (411)
Q Consensus 212 ~~------------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~----------~~~---v~ 265 (411)
+. .--..|..+.|+++|+++++-+. -+ |++||+. ..+++.++..+.. ... -.
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 11 12346888999999999997654 34 9999994 4455555544211 112 24
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
.++|+.++.++++|+..+.+++|++..|.+.
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCcce
Confidence 5789999999999999999999998877654
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=4.2e-11 Score=108.82 Aligned_cols=216 Identities=12% Similarity=0.141 Sum_probs=132.9
Q ss_pred CCEEEEEe-CCcEEEEecCCCc--ceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF 130 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~ 130 (411)
+--|.+|- .|.|.+.+....+ +++..........+.++.|-+ +..++++-.. |.+.++|.+ +
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~-------~ 251 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKE-------I 251 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------CceEEeecc-------c
Confidence 44455666 7777777654311 111111112234555555554 5566665333 899999851 1
Q ss_pred eecCceeEEEEcCCeEEEEEcCeEEEEEc-CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc-
Q 015198 131 AFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM- 208 (411)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~- 208 (411)
.....-.+....+++..+. |..|.- .+..++..+..... .+..+++++|+++||+.+ .||.++|++.....
T Consensus 252 ~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 252 VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQEL 324 (636)
T ss_pred cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccc--cccceeEcCCCceEEEEe-cCceEEEeeccHHHH
Confidence 1111111111122222222 111110 11133333333333 345566667889999864 99999998877644
Q ss_pred eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-----------------
Q 015198 209 IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP----------------- 271 (411)
Q Consensus 209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp----------------- 271 (411)
+-.++..-+...|++|+|||++|++|++|.- |.||.+...+.+..-.+ |+..|..++|.|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~~~~ 401 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGMDST 401 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeeccccccccccccccccccc
Confidence 3445566788999999999999999999999 99999999988877666 999999999983
Q ss_pred ------------------CC-------------CEEEEEeCCCcEEEEEccccc
Q 015198 272 ------------------NV-------------QWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 272 ------------------dg-------------~~l~s~s~dg~I~vwd~~~~~ 294 (411)
++ ..|.+.+.|-.+.+||+....
T Consensus 402 ~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 402 FSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 246678889999999997654
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=6.2e-10 Score=105.59 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=127.6
Q ss_pred CCCEEEEEEeccCCeEE--E--EecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E--cC--eE
Q 015198 85 SGGFRIVEMLFRCNILA--L--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--EH--KI 154 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~--l--~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~--dg--~i 154 (411)
..........|+|++.. + ++. .+ ....|.+.++..++........+......|+|||+.++ . +| .+
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~-~~---g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSY-KL---GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEc-cC---CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 33444567789999642 3 332 21 12578888998887655555666677789999998777 3 22 34
Q ss_pred --EEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc--C--CcceEEEeccccceeEEEec
Q 015198 155 --YVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--G--LNMIKLINAHDSHIACFTLT 225 (411)
Q Consensus 155 --~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~--~~~~~~~~~~~~~i~~l~~s 225 (411)
..|++..+ +..+....... ......++|++..|+++...+|...||.. . +.....+..+...+....|+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 44676542 32222222211 12345667778888876656676555443 2 23345555555677889999
Q ss_pred CCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEEEEcccccc
Q 015198 226 LDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRVRVV 295 (411)
Q Consensus 226 p~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~ 295 (411)
|||+.|+..+.+ .. |.+||+.+++.. .+.. ....+....|+|||++|+.... ...|++||+..++.
T Consensus 336 PDG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999988876543 35 999999888764 3332 2235677899999998875443 34688889887654
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=4.7e-10 Score=107.07 Aligned_cols=213 Identities=14% Similarity=0.100 Sum_probs=136.8
Q ss_pred cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (411)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (411)
.|.++|.+.... .. +..+...+....|+|++..++....+. ....|++||+.+++......+...+.++.|+||+
T Consensus 171 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGANP-QT--ITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCCCC-EE--eecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 466666653222 11 213444567788999987776544320 1258999999988765555566677789999999
Q ss_pred EEEE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEecccc
Q 015198 146 IVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS 217 (411)
Q Consensus 146 ~~~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~ 217 (411)
..++ . +..|++||+.+++... +..+.... ....+++++..|+++....+ .|++++..+.....+..+..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~--~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGID--TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCC--CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 7665 2 3469999998765433 32222212 22344567777776554444 46666666655666666667
Q ss_pred ceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEcc
Q 015198 218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLR 291 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~ 291 (411)
.+..+.|+|+|++|+.++.++ . |.+||+.++... .+... .......|+|||++|+..+.++ .+++.+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 778889999999998887765 6 899999876543 33321 1234568999999988877655 34555533
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.6e-10 Score=102.24 Aligned_cols=236 Identities=12% Similarity=0.111 Sum_probs=156.9
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~ 127 (411)
+++.|+.|..+.|--..+.+.+|+....+.... .++...+....+...|.-..++.---..+-....|+||.......-
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 688999998776655588999999987554333 3433333333333333333333221111123478999986533222
Q ss_pred EEEe----ecCceeEEEEcCCeEEEE---------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 128 GEFA----FRSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 128 ~~~~----~~~~i~~~~~~~~~~~~~---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
..+. +...=..+.|++-+.-+. ...++++++++...+...+ ...+++..+.|++++.. +
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~E-F 285 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGRE-F 285 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCE-E
Confidence 2221 344455677887654332 2357888888743444333 33567777777777653 4
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
-++-|..-..+.|++.++..+..+. .++=+++-|+|.|++|+.++- .|. |.|||+.+.+++..+... .-+
T Consensus 286 ~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~----~tt 358 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA----NTT 358 (566)
T ss_pred EEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC----Cce
Confidence 4445888889999988888877653 566778999999999888764 477 999999998888887762 345
Q ss_pred EEEeCCCCCEEEEEeC------CCcEEEEEcccc
Q 015198 266 SIALSPNVQWLAVASD------KGTVHIFSLRVR 293 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~------dg~I~vwd~~~~ 293 (411)
-+.|+|||+++++++. |+.++||+....
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 6799999999998875 678999998654
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=3.7e-09 Score=90.50 Aligned_cols=214 Identities=13% Similarity=0.176 Sum_probs=143.3
Q ss_pred CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-CCcEEEEEe---ecCceeEEE
Q 015198 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEFA---FRSDVRSVK 140 (411)
Q Consensus 65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-~~~~~~~~~---~~~~i~~~~ 140 (411)
+.|.|||=.....+... .-...|.++...++..+++.. +.|.||... +-+.++.+. .+..+.+++
T Consensus 75 NkviIWDD~k~~~i~el---~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL---SFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcEEEEE---EeccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 46899994433333333 345567788888888777763 899999976 446666665 344555555
Q ss_pred EcCCeEEEE----EcCeEEEEEcCCcee--eEEEeccCCCcceEEEccCCCceEEEEecCCCCe-EEEEE-cCCcceEEE
Q 015198 141 LSRDRIVVV----LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ-VRIEH-FGLNMIKLI 212 (411)
Q Consensus 141 ~~~~~~~~~----~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~-i~i~~-~~~~~~~~~ 212 (411)
-..+..+++ .-|.|.|-|+...+. ...+..|...+.++++.. +|..+|+ ++..|+ |+||+ .++..+..+
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~vAT-aStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTLVAT-ASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccEEEE-eccCcEEEEEEEcCCCcEeeee
Confidence 555666666 579999999976554 467888988666655554 5567765 556666 67765 556777777
Q ss_pred ec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE-----------EeC-----------CCCCcceEEEE
Q 015198 213 NA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-----------VRR-----------GVDRAEIYSIA 268 (411)
Q Consensus 213 ~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-----------~~~-----------~~~~~~v~~l~ 268 (411)
.. ....|.+|+|||++.+||++|+.|+ ++||.++....-.. +.. +...+...-++
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~ 299 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIA 299 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEE
Confidence 53 3578999999999999999999999 99998865321111 100 00223445567
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
|-.+.+.++..+.||.-+=+.+...
T Consensus 300 fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 300 FGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred ecCCCCeEEEEEeCCcEEEEEeccc
Confidence 7666566777777887665555433
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.5e-10 Score=99.14 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=106.3
Q ss_pred cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc
Q 015198 133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM 208 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~ 208 (411)
...+..++|++.-..++ .|..|++||-.. +....++. .+..+.++++.|.... .|++ |. .+-|.+|..+...
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elav-gC-r~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAV-GC-RAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeee-ee-cceeEEEEcCccc
Confidence 45677788888544333 799999999765 44444433 2333455566665443 3444 43 3457777654311
Q ss_pred ---------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198 209 ---------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV 273 (411)
Q Consensus 209 ---------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg 273 (411)
+..-.+| .+|++++|++||..|++++.+...|.|||..++..+..... ..+.+.-+.|||||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg 250 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence 1111233 68999999999999999987766699999999887654433 45578999999999
Q ss_pred CEEEEEeCCCcEEEEEccc
Q 015198 274 QWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 274 ~~l~s~s~dg~I~vwd~~~ 292 (411)
.+|.+++-|+..++|+...
T Consensus 251 d~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CEEEEecccceeeeehhcc
Confidence 9999999999999996544
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=1.1e-08 Score=92.70 Aligned_cols=236 Identities=13% Similarity=0.037 Sum_probs=151.5
Q ss_pred EcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-----CEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198 52 WNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTK 115 (411)
Q Consensus 52 ~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~d~~ 115 (411)
++|||+.|+++. ++.|.+||..+.+......+... ......+.+++++..+.....+ .+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~---p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS---PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC---CCCE
Confidence 999999887654 47899999999887766654222 2233467788988766654432 2399
Q ss_pred EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCC-ceee-EEEe---ccCCCcceE-EEccCCCceE
Q 015198 116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLL-HQIE---TLANLRGLC-CLSHHSSTSV 188 (411)
Q Consensus 116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~-~~~~-~~~~---~~~~~~~~~-~~~~~~~~~~ 188 (411)
|.+.|+.+++.+.++.......-+..+++...+. .||......+.+ ++.. .... ....++... .+.+ .++..
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~ 208 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRL 208 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcE
Confidence 9999999999999998655544455555544444 677666655432 2211 1111 100000000 1222 14555
Q ss_pred EEEecCCCCeEEEEEcCC------cceEEEec-------cccceeEEEecCCCCEEEEEc----------CCCeEEEEEE
Q 015198 189 LACPGLQRGQVRIEHFGL------NMIKLINA-------HDSHIACFTLTLDGLLLATAS----------TRGTLIRIFN 245 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~------~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s----------~dg~~I~vwd 245 (411)
+..+ ..|.|.+-+..+ .....+.. ..+.+.-++++++++.++... ..+. |.++|
T Consensus 209 ~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD 285 (352)
T TIGR02658 209 VWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD 285 (352)
T ss_pred EEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence 5544 349999855332 11222111 223344599999999887743 1245 99999
Q ss_pred CCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEEe-CCCcEEEEEccccccCC
Q 015198 246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~I~vwd~~~~~~~~ 297 (411)
..+++.+..+..+ ..+..++++||++ +|++.. .++.|.|+|+.+++...
T Consensus 286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9999999998853 3789999999999 887666 57889999999998664
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.6e-10 Score=106.17 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=193.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-------------eEEeecCCCCEEEEEEeccCCeEEEEecCCC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-------------TFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 108 (411)
......|++|+....++|+|+ ||.+++..+++... ...+.+.+|...+..+.|+.+...+.+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 455789999999999999999 99999998864211 1223456888889999999999999988887
Q ss_pred CCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee-EEEeccCCCcceEEEc
Q 015198 109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLS 181 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~ 181 (411)
|.|.||-+-.|.-..++. .++.|.+++|+.||..++ .||.|.+=.++..+.- +.+++. ......
T Consensus 93 -----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv~ 163 (1189)
T KOG2041|consen 93 -----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHVL 163 (1189)
T ss_pred -----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----ecccee
Confidence 999999988876554432 578899999999998887 7999888776432211 112211 122334
Q ss_pred cCCCceEEEEecCCCCeEEEEEcCCcce--------EEE----eccccceeEEEec--------CCCCEEEEEcCCCeEE
Q 015198 182 HHSSTSVLACPGLQRGQVRIEHFGLNMI--------KLI----NAHDSHIACFTLT--------LDGLLLATASTRGTLI 241 (411)
Q Consensus 182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~--------~~~----~~~~~~i~~l~~s--------p~g~~l~s~s~dg~~I 241 (411)
+++|...+.+ +-.+|.+.+++..+.-. ... ......|..+.|. |+...|+.+..+|. +
T Consensus 164 ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-~ 241 (1189)
T KOG2041|consen 164 WSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-M 241 (1189)
T ss_pred ecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-e
Confidence 4555555444 55788899977665211 111 1112235555553 47778999999998 8
Q ss_pred EEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCcc
Q 015198 242 RIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDT 321 (411)
Q Consensus 242 ~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (411)
.|..-.+......+.. .-.+..+.|+++|..||+++.|..-. ...
T Consensus 242 QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~-----~~~--------------------------- 286 (1189)
T KOG2041|consen 242 QIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDAD-----EPT--------------------------- 286 (1189)
T ss_pred hhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccccc-----Ccc---------------------------
Confidence 8875444433334443 24688999999999999998764210 000
Q ss_pred ccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 322 LISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
..|...-++.++ ..+-++++|......++|...+.-++...|+.+|+-++.|
T Consensus 287 ------d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 287 ------DSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred ------ccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 011122222222 3456899999888888998877777888899999988887
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.5e-07 Score=87.06 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=160.4
Q ss_pred EEEEe-C----CcEEEEecCCCcceEEe--ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC--cE--E
Q 015198 59 FAAGT-S----CGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--RC--I 127 (411)
Q Consensus 59 la~g~-d----g~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~--~~--~ 127 (411)
+++|+ . +.|.+|+++.....+.. .+ .......-+.+++++.+|.+..+.. ...+.|..|++... +. +
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEe
Confidence 45555 3 78999988433332221 11 1111222244455443333332210 01389999987664 22 2
Q ss_pred EEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceeeEE---Eec--------cCCCcceEEEccCCCceEEE
Q 015198 128 GEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQ---IET--------LANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 128 ~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~l~ 190 (411)
.... .......++++|++.+++ .+|.|.++++.. +.+... +.. .......-++.++|++++++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3333 355667899999998777 589999999976 444333 210 01122345666777777777
Q ss_pred EecCCCCeEEEEEcCCcc--e---EEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECC--CCc--eEEEEeCC--
Q 015198 191 CPGLQRGQVRIEHFGLNM--I---KLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGT--RLQEVRRG-- 258 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~--~---~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~--~~~~~~~~-- 258 (411)
++.-....|.++..+... + ..+. .....-+.++|+|++++++...+....|.+|++. ++. .+..+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 655455678886654432 2 2222 2345568899999999887665544339999987 443 23333321
Q ss_pred -C-CCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccc-cCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCc
Q 015198 259 -V-DRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS 334 (411)
Q Consensus 259 -~-~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (411)
. .......|+++|||++|+++. ..+.|.+|+++... ...
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~------------------------------------- 282 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT------------------------------------- 282 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE-------------------------------------
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE-------------------------------------
Confidence 1 112578899999999988766 45679999995422 110
Q ss_pred ccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEe-CCcEEEEEEecCCC
Q 015198 335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFDPVHG 392 (411)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-dg~~~~~~~~~~~~ 392 (411)
.+..+.......-.++++++ +.|++++. ++.|.+|.++.+.|
T Consensus 283 ----------------~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 283 ----------------LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp ----------------EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ----------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 01233333333456788888 66777775 58999999997665
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.4e-09 Score=101.45 Aligned_cols=175 Identities=16% Similarity=0.053 Sum_probs=117.5
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.++|...+.......+...+....|+|||..++ . ...|++||+.+++..... .... ......++|++.
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g--~~~~~~~SpDG~ 255 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEG--LNGAPAWSPDGS 255 (430)
T ss_pred eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCC--CcCCeEECCCCC
Confidence 368888877655544445777889999999998876 1 246999999887654322 2222 122455666777
Q ss_pred EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCc
Q 015198 188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~ 262 (411)
.|+++...+| .|++++........+..+........|+|||+.|+..+.. .. |+++|+.+++....... ..
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CC
Confidence 7776555555 5666777776666676666667778999999987765542 25 78888887775432221 12
Q ss_pred ceEEEEeCCCCCEEEEEeCC-C--cEEEEEcccccc
Q 015198 263 EIYSIALSPNVQWLAVASDK-G--TVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d-g--~I~vwd~~~~~~ 295 (411)
......|+|||++|+..+.+ + .|.+||+.+++.
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 33457899999999877653 3 488889887653
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7e-10 Score=106.03 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=128.0
Q ss_pred cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198 66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR 145 (411)
Q Consensus 66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (411)
.+.++|.+...... +..+...+....|+|++..++..+.+. ....|.+||+.+++...............|+||+
T Consensus 199 ~l~i~d~dG~~~~~---l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQM---LLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceE---eecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 45555655432211 224455667788999987666543220 1147999999888764433344455678999999
Q ss_pred EEEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEecccc
Q 015198 146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDS 217 (411)
Q Consensus 146 ~~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~ 217 (411)
..++ .++ .|+++|+.+++... +..+.. ......+++++..|+++...++...| ++........+.....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~ 350 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE 350 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence 8776 244 48888988776433 332322 22344556677777776655555444 4554444444433333
Q ss_pred ceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-Cc--EEEEEcc
Q 015198 218 HIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-GT--VHIFSLR 291 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~--I~vwd~~ 291 (411)
.....+|+|||++|+..+.+ +. .|.++|+.+++.. .+... . ......|+|||++|+..+.+ +. +++++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 34457899999988776543 32 2666788877653 33321 1 12245799999988766544 33 6677764
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=9.4e-10 Score=105.27 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=131.0
Q ss_pred EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeE
Q 015198 67 FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI 146 (411)
Q Consensus 67 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (411)
|.++|.+.... .. +..+...+....|+|++..++..+.+. ....|.+||+.+++........+.+....|+|||.
T Consensus 181 l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 181 LQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence 55556554322 11 214455678889999987665543320 12579999998887655444555666789999998
Q ss_pred EEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCCcceEEEeccccc
Q 015198 147 VVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSH 218 (411)
Q Consensus 147 ~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~ 218 (411)
.++ .++ .|++||+.+++.. .+..+.. ......+++++..|+++...+|. |++++........+......
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 776 233 6999999887654 3333322 22334556677777776555554 55555554444444333333
Q ss_pred eeEEEecCCCCEEEEEcCC-C--eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-C--cEEEEEccc
Q 015198 219 IACFTLTLDGLLLATASTR-G--TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLRV 292 (411)
Q Consensus 219 i~~l~~sp~g~~l~s~s~d-g--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~I~vwd~~~ 292 (411)
.....|+|+|++|+..+.+ + . |.+||+.+++.. .+... .......|+|||++|+..+.+ + .|++++++.
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4457899999998876543 2 4 888999887653 33321 122356899999998876654 3 466667643
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=4.9e-10 Score=96.75 Aligned_cols=249 Identities=11% Similarity=0.110 Sum_probs=180.1
Q ss_pred CCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198 32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ 110 (411)
Q Consensus 32 ~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 110 (411)
+.+-+....+||.+.|+....-|...-+.+.+ |.+++||--....+...--.+..+..+.++.+..+...|+.+-+.
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n-- 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN-- 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec--
Confidence 45556677899999999999999888888888 999999975544443333234667788889999998888888776
Q ss_pred CCCCeEEEEECC----CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198 111 YPPTKVIIWDDH----QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 111 ~~d~~i~vwd~~----~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (411)
|++.-+.+. ....++.+. |...+..+.|+....+++ .|..+.-.-.+.+..+..+..... ..++.+
T Consensus 90 ---gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 ---GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ---ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 888888643 333344433 889999999987777776 455555444455554433322111 011111
Q ss_pred CCCceEEEEecCCCCeEEE---EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE-EEEeCC
Q 015198 183 HSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-QEVRRG 258 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-~~~~~~ 258 (411)
+- . .++.|...|.|.+ .......+..+.+|.+.+.+++|.+...+|++|..|.. +.+||+.-.+-+ .++.+
T Consensus 164 d~--~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g- 238 (404)
T KOG1409|consen 164 DA--L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG- 238 (404)
T ss_pred ee--E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc-
Confidence 11 1 3445767777665 44455778889999999999999999999999999999 999999655433 34445
Q ss_pred CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
|...|..+..-+--+.|.+++.||.|.+|+.+...
T Consensus 239 -h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 239 -HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -chhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 77789888888888899999999999999998754
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.6e-09 Score=96.18 Aligned_cols=235 Identities=18% Similarity=0.178 Sum_probs=154.5
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC------CCCeEEEEEC
Q 015198 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY------PPTKVIIWDD 121 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~------~d~~i~vwd~ 121 (411)
+-+.|||.|.||++-....|.+|--.....+.+. .+..+.-+.|+|+..+|++-+..|.. ....++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF----~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF----YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhc----cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 6799999999999999888999987766554332 23456677899999999987665443 2368999999
Q ss_pred CCCcEEEEEee---cCce-eEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198 122 HQSRCIGEFAF---RSDV-RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195 (411)
Q Consensus 122 ~~~~~~~~~~~---~~~i-~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 195 (411)
.+|...+.+.. ...+ .-+.|+.|+++++ ....|.||+.....++..-... ..++-.|+|+|.+.+||+=.-.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslk--i~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLK--ISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccC--CccccCcccCCCcceEEEEccc
Confidence 99998888873 2222 2357999999999 6789999997664443222211 2255677888877788763222
Q ss_pred CC----eEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEc----------CCCeEEEEEECCCCce-EEEEeCCC
Q 015198 196 RG----QVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS----------TRGTLIRIFNTVDGTR-LQEVRRGV 259 (411)
Q Consensus 196 dg----~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s----------~dg~~I~vwd~~~~~~-~~~~~~~~ 259 (411)
.. .+.| -....+.++....++-.=..+.|-.+|.+|+.-- .-.. +.|+.++.... +..+.
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve--- 443 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE--- 443 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence 22 2222 2223333444344443344567778888887521 1123 56666655432 22333
Q ss_pred CCcceEEEEeCCCCCEEEEEeC---CCcEEEEEccc
Q 015198 260 DRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRV 292 (411)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~ 292 (411)
-...|...+|-|.|..+++.+. ..++.+|.+++
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 3457899999999998776543 34799999986
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4.4e-10 Score=98.58 Aligned_cols=217 Identities=13% Similarity=0.132 Sum_probs=144.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCc----ceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEE
Q 015198 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~ 117 (411)
...+|..++.. ||.++++-++|.+.+|..+... ...... .......+.-.+. -.++++|+.. .-..+.
T Consensus 104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la---~g~g~~~~r~~~~~p~Iva~GGke---~~n~lk 176 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA---TGPGLYDVRQTDTDPYIVATGGKE---NINELK 176 (412)
T ss_pred ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeee---cCCceeeeccCCCCCceEecCchh---ccccee
Confidence 34445444443 4444444449999999987322 222221 2233444444443 3445556543 126799
Q ss_pred EEECCCCcEEEEEe----------ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEc
Q 015198 118 IWDDHQSRCIGEFA----------FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLS 181 (411)
Q Consensus 118 vwd~~~~~~~~~~~----------~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 181 (411)
+||++..+.+..-+ .+-.++++.|-+. ...++ .-+.|++||.+.+ +++..+....+++..+.+.
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 99999886665543 1345667788776 55555 6799999999765 5677777777766666666
Q ss_pred cCCCceEEEEecCCCCeEEEEEcCCcc-eEE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198 182 HHSSTSVLACPGLQRGQVRIEHFGLNM-IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (411)
++. .+++ +|...|.+..++.+... ... +.+-.+.|++|..+|.+++|++++-|.. +||+|+.+.+++.....
T Consensus 257 p~g--n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv-- 330 (412)
T KOG3881|consen 257 PSG--NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV-- 330 (412)
T ss_pred CCC--cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh--
Confidence 654 4554 57788899886665543 333 6788999999999999999999999999 99999999777766553
Q ss_pred CCcceEEEEeCCCC
Q 015198 260 DRAEIYSIALSPNV 273 (411)
Q Consensus 260 ~~~~v~~l~~spdg 273 (411)
...+++|.+.++-
T Consensus 331 -Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 -KSRLTFILLRDDV 343 (412)
T ss_pred -hccccEEEecCCc
Confidence 3356777776543
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4e-09 Score=97.36 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=139.5
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe----ecCceeEEEEc------C--------------CeEEEE---E
Q 015198 98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLS------R--------------DRIVVV---L 150 (411)
Q Consensus 98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~----~~~~i~~~~~~------~--------------~~~~~~---~ 150 (411)
...+++....| |.+++||...++....+. ..+...+..|. | +...++ .
T Consensus 4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 34556666666 999999999998888876 23444444443 1 223333 5
Q ss_pred cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCC
Q 015198 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL 229 (411)
Q Consensus 151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~ 229 (411)
.|.|.+|+...++....+....+.-.+.++..+.+-..|. +++.|+.+..|+... ..+..+......+.+++++|||.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 7899999999999998887555544566666555545554 466788888877665 45566677788899999999999
Q ss_pred EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-----CCEEE-EEeCCCcEEEEEccccccC
Q 015198 230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQWLA-VASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~-s~s~dg~I~vwd~~~~~~~ 296 (411)
.|++++. . |++||+++++.+.+|.+ |.++|.+++|..+ |.++. +...+.-|.+|-++...+.
T Consensus 158 ~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kk 225 (541)
T KOG4547|consen 158 ILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKK 225 (541)
T ss_pred EEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccccc
Confidence 9999884 4 99999999999999999 8999999999876 56555 4445566999988875443
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.2e-09 Score=100.68 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=113.7
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
..|.++|...............+....|+|||+.++ .+ ..|++||+.+++... +..... ......++|++.
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g--~~~~~~wSPDG~ 274 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPG--INGAPRFSPDGK 274 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCC--CcCCeeECCCCC
Confidence 478888865555444444777889999999998877 12 369999998876533 221121 122455667777
Q ss_pred EEEEecCCCCe--EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCe-EEEEEECCCCceEEEEeCCCCCcc
Q 015198 188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 188 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
.|+++.+.+|. |++++........+..+.......+|+|||+.|+..+. ++. .|+++|+.+++... +.. ....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~--~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF--EGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec--CCCC
Confidence 78776666675 55566666666666666666778999999998876554 222 27777887776543 321 1112
Q ss_pred eEEEEeCCCCCEEEEEeC-CC--cEEEEEccccc
Q 015198 264 IYSIALSPNVQWLAVASD-KG--TVHIFSLRVRV 294 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~ 294 (411)
....+|+|||++|+..+. ++ .|.++|+.+++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 345789999999887655 34 35556766654
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=4.2e-10 Score=109.95 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=105.7
Q ss_pred EcCeEEEEEcCCceeeEEEeccCCCc--ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EEeccccceeEEEecC
Q 015198 150 LEHKIYVYSFVDLKLLHQIETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTL 226 (411)
Q Consensus 150 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~l~~sp 226 (411)
.++.+.+||...+.....+....... ..+-+-.+++..+++ +|+--+.|.+|........ .+.+|.+.|..+.++.
T Consensus 107 ~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~-~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~ 185 (967)
T KOG0974|consen 107 SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIA-SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSL 185 (967)
T ss_pred cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEE-eccccccEEEEeccccCCcceecccCCceEEEEEcc
Confidence 78899999988776666554333211 122233344545665 4778899999887654333 4899999999999999
Q ss_pred CCCEEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
||+++++.|+|.. +|+|++.+.+... +.-+ |.+.|+.++|.|+ .+++++.|-+.++|+.+-
T Consensus 186 dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 186 DGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred CCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 9999999999999 9999999988765 3334 8999999999998 899999999999995443
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.23 E-value=7.4e-09 Score=94.02 Aligned_cols=242 Identities=15% Similarity=0.078 Sum_probs=160.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC----------CC
Q 015198 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----------YP 112 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----------~~ 112 (411)
..-++..++|||.|.+|++.....|.+|......++... .+..+..+.|+|++.+|++-+..+. ..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~----~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF----RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee----ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 455789999999999999999888999998876644333 3445778889999999999877644 23
Q ss_pred CCeEEEEECCCCcEEEEEee-cCc--ee-EEEEcCCeEEEE--EcCeEEEEEcCCceee-EEEec-cCCCcceEEEccCC
Q 015198 113 PTKVIIWDDHQSRCIGEFAF-RSD--VR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIET-LANLRGLCCLSHHS 184 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~~~-~~~--i~-~~~~~~~~~~~~--~dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 184 (411)
++.+.+||..+|..+..+.. ..+ .. -+.|+-+..+++ ....++|+++ ++... ..+.. ....+....+++.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 45799999999999998873 222 34 678999999988 6889999997 33221 11111 11212333444443
Q ss_pred CceEEEEe----cCCCCeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEc-----------CCCeEEEEEECCC
Q 015198 185 STSVLACP----GLQRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAS-----------TRGTLIRIFNTVD 248 (411)
Q Consensus 185 ~~~~l~~~----g~~dg~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s-----------~dg~~I~vwd~~~ 248 (411)
++..||+- +...+.+++|......+.. -.-....-..+.|++.|++|+.-- .... ++|+++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecc
Confidence 44444431 3467788887766433222 122223334688899998765421 1234 88888863
Q ss_pred CceEEEEeCCCCCcceEEEEeCCCCCEEEEEe--CCCcEEEEEcccc
Q 015198 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS--DKGTVHIFSLRVR 293 (411)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s--~dg~I~vwd~~~~ 293 (411)
.... .... ..++|...+|.|+++.+++.+ .+-.+.++|++.+
T Consensus 265 ~~i~-V~~~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 265 RSIP-VEKD--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccc-eecc--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 3332 2222 467999999999988776544 6778999998876
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=1e-10 Score=119.65 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=145.5
Q ss_pred CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC
Q 015198 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD 161 (411)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~ 161 (411)
-..+.+|.-+|...+.++|+.| |.+++|....++.+..++ ....|+.+.|+.+|.... .||.+.+|.+.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred cCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3456778888888888999988 999999999999988887 468899999999887666 79999999976
Q ss_pred ceeeEEEeccCCCcceEEEccCCCceEEEEec--CCCCeEEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCC
Q 015198 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTR 237 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (411)
.+.....+.|... ...|.+-. ..++.+| +.++.+.+|+....... .-+.|.+.++++++.|..++|++|+.+
T Consensus 2282 pk~~~s~qchnk~--~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKA--LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCcc--ccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 4555555666553 33333333 2344444 46788999886543221 227899999999999999999999999
Q ss_pred CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
|. |++||++..++++++.. +. ...++++|+..|.|+||++....-..
T Consensus 2358 G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2358 GE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred Cc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhh
Confidence 99 99999998887766653 33 55789999999999999999886544
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=5.2e-09 Score=88.68 Aligned_cols=219 Identities=16% Similarity=0.152 Sum_probs=139.7
Q ss_pred CcEEEEecCCCcceEEeec-CCCCEEEEEEeccC---CeE-EEEecCCCCCCCCCeEEEEECCCCcEEEEEee-------
Q 015198 65 CGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRC---NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF------- 132 (411)
Q Consensus 65 g~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~------- 132 (411)
|.+.+|+++..+..-...+ ......+..|.|.- ++. .++-+... |.|.++..........++.
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKIS 120 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhh
Confidence 4577888875433221001 12333444455541 222 33333333 8999988554444333331
Q ss_pred cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc
Q 015198 133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN 207 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~ 207 (411)
.....++.|++.+.-++ .+|.+.+-+.....+. +.++.|....+...++... .-|+++|+.|+.+..|+.+..
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~--pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE--PNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC--CceEEecCCCceEEEEEecCC
Confidence 11245667777766665 5788886665554443 3677787766666655433 347778999999999998732
Q ss_pred ---ceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEEEEeCCC--CCEEEEEe
Q 015198 208 ---MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPN--VQWLAVAS 280 (411)
Q Consensus 208 ---~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~s~s 280 (411)
.-...+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ -++++..-. ..+.|+.+.++|. +++|+++-
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHH
Confidence 2223467889999998875 5779999999999 9999998 466664443 4478999999985 34566666
Q ss_pred CCCcEEEEEcccccc
Q 015198 281 DKGTVHIFSLRVRVV 295 (411)
Q Consensus 281 ~dg~I~vwd~~~~~~ 295 (411)
..| .+|-+++.+..
T Consensus 275 h~G-~ki~~~~~~~~ 288 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVL 288 (339)
T ss_pred hcC-ceEEEeccccc
Confidence 777 88888887654
No 256
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.20 E-value=2.9e-11 Score=115.15 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=169.5
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS 158 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd 158 (411)
+.+|-..|.+..|+..+..++++++| ..++||..+++.++.... |.+.|+.++.+.....++ .|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34788889999999999999999998 999999999999999988 999999999999888887 688899999
Q ss_pred cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE----e-ccccceeEEEecCCCCEEEE
Q 015198 159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----N-AHDSHIACFTLTLDGLLLAT 233 (411)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~----~-~~~~~i~~l~~sp~g~~l~s 233 (411)
+.++.++..+.+|.+.++.++++|-+ +.+.||++++|+.+....... . ....-+.++.|-.++.-+++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999855555554432 356899999999884332222 1 12345667788888889999
Q ss_pred EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccc
Q 015198 234 ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL 312 (411)
Q Consensus 234 ~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 312 (411)
++.|+. -..|.+..... +...+.-+.++.| ..+.+++-.+-.+.+|++.+|....-+..+
T Consensus 334 gs~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh---------- 394 (1113)
T KOG0644|consen 334 GSRDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH---------- 394 (1113)
T ss_pred ccCCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc----------
Confidence 999998 88887543211 1111111122212 145666777888999999999866533333
Q ss_pred ccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198 313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~ 389 (411)
.+.++++-++|- ..-+.++.||...||.+-+
T Consensus 395 ----------------------------------------------sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 395 ----------------------------------------------SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ----------------------------------------------ccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 124566677775 3455677799999998876
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=6.3e-09 Score=98.73 Aligned_cols=225 Identities=10% Similarity=0.006 Sum_probs=132.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEE---EEe-CC--cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 40 SDVDEIELISVSWNQDYGCFA---AGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la---~g~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
+......+.+-+|+|||+.++ +.. ++ .|.+.++++++......+ ........|+||+..++.........+
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcc
Confidence 333455677889999997532 333 44 466667776544333323 223345789999866554332111112
Q ss_pred CeEEEEECCCC---cEEEEEee-cCceeEEEEcCCeEEEE----EcCe--EEEEEcCC-ceeeEEEeccCCCcceEEEcc
Q 015198 114 TKVIIWDDHQS---RCIGEFAF-RSDVRSVKLSRDRIVVV----LEHK--IYVYSFVD-LKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 114 ~~i~vwd~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~----~dg~--i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 182 (411)
..+.+|++..+ +....... ........|+|||..++ .++. |+++++.. +.....+..... ......+
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeE
Confidence 44555776653 33333322 23456789999998776 2454 55555532 233333433322 2334556
Q ss_pred CCCceEEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeC
Q 015198 183 HSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRR 257 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~ 257 (411)
+|++..|++++..+| .|.+++..+.....+......+....|+|||+.|+.... ... |+++|+..++......
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~- 412 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI- 412 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec-
Confidence 777788887654443 577788777666666555556778999999998775432 345 8899998777544333
Q ss_pred CCCCcceEEEEeCCCC
Q 015198 258 GVDRAEIYSIALSPNV 273 (411)
Q Consensus 258 ~~~~~~v~~l~~spdg 273 (411)
..+.+...+|+|-.
T Consensus 413 --~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 --GSGEKRFPSWGAFP 426 (428)
T ss_pred --CCCcccCceecCCC
Confidence 33456677888753
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.7e-08 Score=98.94 Aligned_cols=193 Identities=10% Similarity=0.091 Sum_probs=144.1
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEE---EEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRI---VEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
.+.|....+.-+.+.++.+. ++.+.+|+........+. ........ .-+-++++..++++|.-- +.|.+|
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iivW 160 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIVW 160 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEEE
Confidence 34445555666777888888 999999998764433322 11221111 223366788888888876 999999
Q ss_pred ECCC-CcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEecC
Q 015198 120 DDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 120 d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
+... ...+....|.+.|.++.++.||.+++ .|..+++|++++.+... ..-+|...+.-+++.++ .++ +++
T Consensus 161 ~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~-t~g 235 (967)
T KOG0974|consen 161 KPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RII-TVG 235 (967)
T ss_pred eccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeE-Eec
Confidence 9663 33443444999999999999999998 79999999999987766 45567765555666554 344 466
Q ss_pred CCCeEEEEEcCCcceEEEeccc-cceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198 195 QRGQVRIEHFGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 195 ~dg~i~i~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
.|-+.++|..+...+..+..|. ..|..++..++...+++++.|+. +++||+..
T Consensus 236 edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~ 289 (967)
T KOG0974|consen 236 EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG 289 (967)
T ss_pred cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence 9999999999998888888885 56899999999999999999999 99999754
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=1.8e-07 Score=96.13 Aligned_cols=241 Identities=13% Similarity=0.128 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCCEEEEEe--C---CcEEEEecCCCcc-eEEeecC-----CCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 45 IELISVSWNQDYGCFAAGT--S---CGFRIYNCEPFKE-TFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~--d---g~i~iw~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
..+...+|.+....+.+.. . ..|.+........ .....+. .....++.+.|-++...++.+..+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~----- 96 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS----- 96 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC-----
Confidence 4577778877655444333 2 2344443332221 1111121 345678888888776544444444
Q ss_pred CeEEEE----ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee---------------------
Q 015198 114 TKVIIW----DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL--------------------- 165 (411)
Q Consensus 114 ~~i~vw----d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~--------------------- 165 (411)
|.|.+. +..+...-..-.....|.+++|+||+.+++ .++++.+.+- +...+
T Consensus 97 Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 97 GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWG 175 (928)
T ss_pred ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccC
Confidence 888888 544444333333788999999999998888 4667766542 11111
Q ss_pred ---EEEec------------cC----------CCcceEEEccCCCceEEEEecC--C---CCeEEEEEcCCcceEEEecc
Q 015198 166 ---HQIET------------LA----------NLRGLCCLSHHSSTSVLACPGL--Q---RGQVRIEHFGLNMIKLINAH 215 (411)
Q Consensus 166 ---~~~~~------------~~----------~~~~~~~~~~~~~~~~l~~~g~--~---dg~i~i~~~~~~~~~~~~~~ 215 (411)
.+|.+ +. .....+.++|-+||.++|++.- . -..++||++.+.....-+.-
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v 255 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPV 255 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccC
Confidence 11110 00 1114567889999999987543 2 25788899987655444444
Q ss_pred ccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCC--CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 216 DSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
.+--.+++|-|.|++||+.-. ... |.+|. ++|-.-..|... .....|..|.|++|+..||..-.|. |++|-.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 444567899999999998764 344 88887 566554454432 2456899999999999999988766 999988
Q ss_pred cccc
Q 015198 291 RVRV 294 (411)
Q Consensus 291 ~~~~ 294 (411)
.+..
T Consensus 333 ~NYH 336 (928)
T PF04762_consen 333 SNYH 336 (928)
T ss_pred eCCE
Confidence 7753
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=3e-07 Score=94.59 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=184.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCcEEEE----ecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 42 VDEIELISVSWNQDYGCFAAGT-SCGFRIY----NCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
...+.|.++.|-++...++++. +|.|.++ +.+........ .-..++.++.|+||...++-...+ +++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~-----~~l 144 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDEELLALVTGE-----GNL 144 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCcCEEEEEeCC-----CEE
Confidence 4457899999999998888888 9999998 44442222222 335578899999987665554444 777
Q ss_pred EEEECCCCcEEEEEe-------------------------------------------------ecCceeEEEEcCCeEE
Q 015198 117 IIWDDHQSRCIGEFA-------------------------------------------------FRSDVRSVKLSRDRIV 147 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-------------------------------------------------~~~~i~~~~~~~~~~~ 147 (411)
.+.. .+.+.+.+.. ....-..++|-.||.+
T Consensus 145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 7664 2211111110 1113346789999999
Q ss_pred EE------E-c--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEe---
Q 015198 148 VV------L-E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLIN--- 213 (411)
Q Consensus 148 ~~------~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~--- 213 (411)
++ . + ..+++|+- .|++...-+.-.+ ---+++|.|.|.+||++-...+ .|.++..++-....|.
T Consensus 224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECC-CceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 88 1 2 57999994 4665544442222 2345677777788887654333 3444777775554443
Q ss_pred -ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015198 214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS 289 (411)
Q Consensus 214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd 289 (411)
.....|..+.|++|+..||..-.|. |.+|-..+.. +.+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 3456899999999999999977554 9999876654 33344422 22345559999954 4577777778776666
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198 290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS 369 (411)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
+.-.-........++ .. ....-+| +......+-...+|- -=....+.++. .+..++|++
T Consensus 378 ~~~~v~~s~~~~~~D--------------~g-~vaVIDG-~~lllTpf~~a~VPP----PMs~~~l~~~~-~v~~vaf~~ 436 (928)
T PF04762_consen 378 FAWDVSRSPGSSPND--------------NG-TVAVIDG-NKLLLTPFRRAVVPP----PMSSYELELPS-PVNDVAFSP 436 (928)
T ss_pred EEEEEEecCCCCccC--------------ce-EEEEEeC-CeEEEecccccCCCc----hHhceEEcCCC-CcEEEEEeC
Confidence 544322110000000 00 0000011 111000111111221 11123455555 566778887
Q ss_pred C-CEEEEEEeCCcEEEEEEecC
Q 015198 370 Q-NTVVIVSMDGSFYRCSFDPV 390 (411)
Q Consensus 370 ~-~~~~~~~~dg~~~~~~~~~~ 390 (411)
+ ..+++...||.+.+|.++..
T Consensus 437 ~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 437 SNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCeEEEEECCCCEEEEEecCC
Confidence 7 56999999999999997653
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=7e-08 Score=90.76 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=127.1
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~ 134 (411)
+..+++++ ++.+..+|.++++......+. ... ...... .++.+++.. .+ +.|..||.++|+.+..+....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~-~~~p~v-~~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~~~ 175 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEV-LSPPLV-ANGLVVVRT-ND-----GRLTALDAATGERLWTYSRVT 175 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-cee-ecCCEE-ECCEEEEEC-CC-----CeEEEEEcCCCceeeEEccCC
Confidence 45666666 888888888777766665442 111 111111 233444443 33 899999999999988876433
Q ss_pred cee------EEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC----c-ceEEE--ccCCCceEEEEecCCCCeE
Q 015198 135 DVR------SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----R-GLCCL--SHHSSTSVLACPGLQRGQV 199 (411)
Q Consensus 135 ~i~------~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~----~-~~~~~--~~~~~~~~l~~~g~~dg~i 199 (411)
... ...+. ++.+++ .++.++.+|.++|+.+......... . ....+ .+.-.+..+++ ++.+|.+
T Consensus 176 ~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~-~~~~g~l 253 (377)
T TIGR03300 176 PALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA-VSYQGRV 253 (377)
T ss_pred CceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE-EEcCCEE
Confidence 221 11222 234444 6789999999999877654321100 0 00000 11001123333 3467888
Q ss_pred EEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198 200 RIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278 (411)
Q Consensus 200 ~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 278 (411)
+.++. +++.+.... .. ....+. ..+..++.++.+|. |..+|..+|+.+...... .......... .+..|++
T Consensus 254 ~a~d~~tG~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 254 AALDLRSGRVLWKRD-AS-SYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEEECCCCcEEEeec-cC-CccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEE
Confidence 88665 444433332 11 111222 24567888889999 999999999887655321 1111222222 3568889
Q ss_pred EeCCCcEEEEEccccccC
Q 015198 279 ASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 279 ~s~dg~I~vwd~~~~~~~ 296 (411)
++.+|.|+++|.++++..
T Consensus 326 ~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EeCCCEEEEEECCCCCEE
Confidence 999999999999888753
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=4.6e-07 Score=82.29 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=126.4
Q ss_pred CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC--C---CCCCCCeEEEEECCCCcEEEEEeecCc----
Q 015198 65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD--N---SQYPPTKVIIWDDHQSRCIGEFAFRSD---- 135 (411)
Q Consensus 65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d---~~~~d~~i~vwd~~~~~~~~~~~~~~~---- 135 (411)
+.|.+.|.++.+.+-.... +..... + .++++..+..+.. . ..-.+..|.+||+.+.+.+.++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7899999988665444433 111111 2 5666543332222 0 000128999999999999999884333
Q ss_pred ----eeEEEEcCCeEEEE----E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEc
Q 015198 136 ----VRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHF 204 (411)
Q Consensus 136 ----i~~~~~~~~~~~~~----~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~ 204 (411)
-..++++|||+++. . +..|.+.|+.+++.+.++..... ...+....+..++ .+ .||.... .+.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~-~~--~Dg~~~~v~~d~ 176 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFFM-HC--RDGSLAKVGYGT 176 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccEE-Ee--ecCceEEEEecC
Confidence 33789999998776 3 78999999999999999876432 1222222222222 21 2343332 222
Q ss_pred CCcc-eE---EEeccccce-eEEEecC-CCCEEEEEcCCCeEEEEEECCCC-----ceEEEEeC-----CCCCcceEEEE
Q 015198 205 GLNM-IK---LINAHDSHI-ACFTLTL-DGLLLATASTRGTLIRIFNTVDG-----TRLQEVRR-----GVDRAEIYSIA 268 (411)
Q Consensus 205 ~~~~-~~---~~~~~~~~i-~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~-----~~~~~~v~~l~ 268 (411)
+++. .. .+.....++ ..-.|.+ +|+++....+ |. |.+.|+... +....+.. +-..+.+.-++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 2221 11 111101111 0013455 8888877776 88 999996433 22222221 11233455599
Q ss_pred eCCCCCEEEEEeC----------CCcEEEEEccccccC
Q 015198 269 LSPNVQWLAVASD----------KGTVHIFSLRVRVVG 296 (411)
Q Consensus 269 ~spdg~~l~s~s~----------dg~I~vwd~~~~~~~ 296 (411)
++++++.|++... .+.|.++|..+++..
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 9999998887542 246999998888754
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.8e-07 Score=82.03 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=120.5
Q ss_pred CeEEEEECCCC----cEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCC--ceeeE--EEeccCCCcceEE
Q 015198 114 TKVIIWDDHQS----RCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD--LKLLH--QIETLANLRGLCC 179 (411)
Q Consensus 114 ~~i~vwd~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~--~~~~~--~~~~~~~~~~~~~ 179 (411)
..|.+|++.+. ..++........+-|+|+|+.+.+. .+|.|-.|.+.. |++.. ....... ..+-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~y 93 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCY 93 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeE
Confidence 78999997732 2233334678889999999985554 267787777753 54432 2222222 2367
Q ss_pred EccCCCceEEEEecCCCCeEEEEEcCC----cceEEEeccccc----------eeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 180 LSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINAHDSH----------IACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~----------i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
++.+.++++++++....|.|.+...+. .....+..|.+. +....+.|++++|++.+-.-..|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 777888889988888889999965532 222223345444 788899999999998764322399999
Q ss_pred CCCCceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEcccc
Q 015198 246 TVDGTRLQEVRRG-VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRVR 293 (411)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~ 293 (411)
+..|++...-... ........|.|+|++++....++ +++|.+|+.+..
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 9987653221111 13346789999999998876664 889999999985
No 264
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=5.6e-09 Score=96.01 Aligned_cols=175 Identities=11% Similarity=0.203 Sum_probs=137.9
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccC---------CCcceEEE
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---------NLRGLCCL 180 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~ 180 (411)
..|+-++++.|..+..+. ..+.++++.+++-..+++ .+|.|..||.++...+..+.... ....+.++
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 678888999999999998 568999999999877777 69999999998877666664322 22357888
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc--ccceeEEEecCCC--CEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
.+..++..+++ |..+|.+.|++.........+.| .-+|..+.|.+.+ ..+++. |...++|||-.+|+....+.
T Consensus 235 ~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 235 KFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred EecCCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhcccccCCceeecc
Confidence 89888888876 88999999988887666666666 5578889997763 345443 33339999999999987777
Q ss_pred CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
. ...++.+++-|++-+++++.+++.+..|=+..-.
T Consensus 312 p---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 312 P---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred c---cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 4 4469999999999999999999988888776544
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=2.1e-07 Score=97.45 Aligned_cols=238 Identities=13% Similarity=0.093 Sum_probs=145.6
Q ss_pred EEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCC-------------EEEEEEeccCCe-EEEEecCCCCCC
Q 015198 48 ISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-------------FRIVEMLFRCNI-LALVGAGDNSQY 111 (411)
Q Consensus 48 ~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~l~s~~~d~~~ 111 (411)
..+++++++ .++++-. ++.|++||.+. .......- .+. .....+.+++++ .++++....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC---
Confidence 467888764 4555545 88899999764 22211110 010 123455666544 344444433
Q ss_pred CCCeEEEEECCCCcEEEEEee------------------cCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEe
Q 015198 112 PPTKVIIWDDHQSRCIGEFAF------------------RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIE 169 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~~------------------~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~ 169 (411)
+.|+++|+.++. +.++.. -..-..++++| ++.+.+ .++.|++||..++... .+.
T Consensus 646 --~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 646 --HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred --ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 789999977654 333321 01235789998 455544 5688999998776543 221
Q ss_pred ccC-------------CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--------------c-------
Q 015198 170 TLA-------------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--------------H------- 215 (411)
Q Consensus 170 ~~~-------------~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--------------~------- 215 (411)
+.. .......+++++++..|+++...++.|++|+........+.+ +
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 110 001123455566666555556678899998865432221110 0
Q ss_pred -ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-----------CCcceEEEEeCCCCCEEEEEeCCC
Q 015198 216 -DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKG 283 (411)
Q Consensus 216 -~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg 283 (411)
-.....++++++|+++++-..++. |++||..++........+. .-.....++++++|+++++-+.++
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 112357899999998888888888 9999998776543322110 112567899999999888888999
Q ss_pred cEEEEEcccccc
Q 015198 284 TVHIFSLRVRVV 295 (411)
Q Consensus 284 ~I~vwd~~~~~~ 295 (411)
.|++||+++++.
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999998764
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=3.1e-07 Score=86.37 Aligned_cols=219 Identities=16% Similarity=0.090 Sum_probs=132.5
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~ 134 (411)
+..+++++ ++.+.-+|..+++.+....+...... ..... ++.++++. .+ +.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--~p~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG--GVGAD-GGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc--ceEEc-CCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCc
Confidence 55777777 89999999988888777665332111 11122 34444443 34 999999999999988877544
Q ss_pred ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcce---EEEccCCCceEEEEecCCCCeEEEEE-cCCcc
Q 015198 135 DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVRIEH-FGLNM 208 (411)
Q Consensus 135 ~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~ 208 (411)
.+.+.....++.+++ .++.|+.||.++|+.+..+......... ...... ++ .++ .+..++.+...+ .+++.
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~-~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVL-VGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEE-EECCCCEEEEEEccCCCE
Confidence 443322223445554 6899999999999988777543321110 000111 12 233 355677777644 45544
Q ss_pred eEEEeccc----cc------e-eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198 209 IKLINAHD----SH------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (411)
Q Consensus 209 ~~~~~~~~----~~------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (411)
+....... .. + ....+ .+..++.++.+|. ++.||..+|+.+...... ...... .++..++
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vy 283 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLY 283 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEE
Confidence 43322110 00 0 01111 2456777888999 999999999987666531 111222 2456788
Q ss_pred EEeCCCcEEEEEcccccc
Q 015198 278 VASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 278 s~s~dg~I~vwd~~~~~~ 295 (411)
+++.||.|+.+|..+++.
T Consensus 284 v~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 284 VTDADGVVVALDRRSGSE 301 (377)
T ss_pred EECCCCeEEEEECCCCcE
Confidence 888999999999988864
No 267
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=8.4e-10 Score=99.41 Aligned_cols=250 Identities=12% Similarity=0.124 Sum_probs=172.3
Q ss_pred CCccccCCCCCCeEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceE-EeecCCCCEEEEEEeccCC-eEEEEecCCCC
Q 015198 35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCN-ILALVGAGDNS 109 (411)
Q Consensus 35 ~~~~~~~~h~~~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~ 109 (411)
+......+|...|....|-|. .+.+++++ ||.+++=.+...+.+. ...+..|...+..++..|. -..|.+++.|
T Consensus 176 ~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD- 254 (559)
T KOG1334|consen 176 PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED- 254 (559)
T ss_pred cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc-
Confidence 344567899999999999885 45677766 9999987775433322 2334456666666665554 3456677777
Q ss_pred CCCCCeEEEEECCCCcEEEEEe----ecC---ceeEEEEcCCeEEEE----EcCeEEEEEcCCce------eeEEEec--
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFA----FRS---DVRSVKLSRDRIVVV----LEHKIYVYSFVDLK------LLHQIET-- 170 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~----~~~---~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~------~~~~~~~-- 170 (411)
+.+.-+|+..+.+...+. ... ...+++.+|-..... .|..+++||.+.-. .+..+-.
T Consensus 255 ----~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h 330 (559)
T KOG1334|consen 255 ----AVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH 330 (559)
T ss_pred ----cceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence 999999988776544443 222 567888888665333 67889999985321 1222211
Q ss_pred --cCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCC-------------cceEE-Eecccc--ceeEEEe-cCCCCE
Q 015198 171 --LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGL-------------NMIKL-INAHDS--HIACFTL-TLDGLL 230 (411)
Q Consensus 171 --~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~-------------~~~~~-~~~~~~--~i~~l~~-sp~g~~ 230 (411)
...++.+.++.++. .+.+|+ ...|-.|+++.... ..+.. +++|.. .|..+-| -|...|
T Consensus 331 l~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 331 LVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccCcccceeEEecCCccceee--eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 14566777777773 344554 34677888864332 12222 677854 3556654 588899
Q ss_pred EEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
+++|+.-|. |.||+-.+++.+.-+.+ ....|+||.=+|--..||+++-|..|+||--.+.+
T Consensus 409 VvSGSDCGh-IFiW~K~t~eii~~Meg--Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 409 VVSGSDCGH-IFIWDKKTGEIIRFMEG--DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEecCccce-EEEEecchhHHHHHhhc--ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 999999999 99999999999988888 44489999999999999999999999999875544
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=1.7e-08 Score=87.40 Aligned_cols=197 Identities=12% Similarity=0.178 Sum_probs=136.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
-..++++++++++...|++|- .|++.-+.+... +....+....|...+..+.|+-....+++.+.| ..+.--
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-----k~~~~h 141 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-----KQFAWH 141 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-----cceEEE
Confidence 356789999999999999999 899888876421 111222223677888888898888888888876 555544
Q ss_pred ECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEc--CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
-.+.+..+..+.......++.+.-.-.++. ..|.|.+..+ ....++..+.+|.. .+.++.+++....| ++|..|
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~L-fSg~~d 218 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLL-FSGASD 218 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEE-Eecccc
Confidence 456666555554433333333332222222 3455555444 44567777888877 45566666655555 468899
Q ss_pred CeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198 197 GQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 197 g~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
..+.+|+..+.. ...+.+|...|..+...+--+.|.+++.||. |.+||.+.
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~ 271 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNV 271 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccc
Confidence 999999988754 4566789999999988888889999999999 99999863
No 269
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=3.2e-07 Score=78.16 Aligned_cols=233 Identities=11% Similarity=0.093 Sum_probs=136.1
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEecCCC-cce-EEeec-CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 49 SVSWNQDYGCFAAGTSCGFRIYNCEPF-KET-FRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 49 ~l~~s~~g~~la~g~dg~i~iw~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
.++.+.+|++||+-.|..|.|-..... ..+ -+... +.....-..++|++|..+++.+... |+|+++|+.. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~ 75 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S 75 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence 467789999999999999998876532 111 11111 2334455678899999999988776 9999999654 4
Q ss_pred EEEEEe--------ecCceeEEEEcCCe-------EEEE--EcCeEEEEEcCC-----ceeeEEEecc-CCCcceEEEcc
Q 015198 126 CIGEFA--------FRSDVRSVKLSRDR-------IVVV--LEHKIYVYSFVD-----LKLLHQIETL-ANLRGLCCLSH 182 (411)
Q Consensus 126 ~~~~~~--------~~~~i~~~~~~~~~-------~~~~--~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~ 182 (411)
.+..+. ....|..+.|.+-. .+++ ..|.++-|-+.. .+..+.+... ..+..+.++.+
T Consensus 76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 444443 23456666665422 2333 678777776532 2333444321 12346677778
Q ss_pred CCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec---CCCCEEEEEcCCCe-----EEEEEECCCCceEEE
Q 015198 183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT---LDGLLLATASTRGT-----LIRIFNTVDGTRLQE 254 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s---p~g~~l~s~s~dg~-----~I~vwd~~~~~~~~~ 254 (411)
++..++|+++|.....-..+ ++....+++-.+- |..+. ++...|+. .-.+|.+-+.+...
T Consensus 156 ~p~h~LLlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs- 223 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS- 223 (282)
T ss_pred cCCCCEEEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-
Confidence 88878888777655421111 1112222222221 22211 12222221 01234433322211
Q ss_pred EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 300 (411)
.. ......|..|..||||+.||+...+|.|.+|++.+-.......
T Consensus 224 ~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 224 RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11 1245689999999999999999999999999998876554333
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=1.8e-07 Score=84.56 Aligned_cols=142 Identities=11% Similarity=-0.054 Sum_probs=107.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CC-cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SC-GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
.-+|.+.|.-..+.-+++-++.|. || .+-||+.++.+.. + +...-..+.++..++++..++.+.+. ..|.
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r--~e~~lg~I~av~vs~dGK~~vvaNdr-----~el~ 426 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-R--IEKDLGNIEAVKVSPDGKKVVVANDR-----FELW 426 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-E--eeCCccceEEEEEcCCCcEEEEEcCc-----eEEE
Confidence 457888899999999999999999 77 8999999875522 2 22556678889999999988887776 8999
Q ss_pred EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198 118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
+.|+.+|.....-+ ..+-|+.+.|+|++++++ ....|+++|+..++....-.... ...+-++++++++|
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta---~DfsPaFD~d~ryL 503 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFSPAFDPDGRYL 503 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc---cccCcccCCCCcEE
Confidence 99999987654433 578899999999999999 35679999998887664432221 33445566676666
Q ss_pred EEe
Q 015198 190 ACP 192 (411)
Q Consensus 190 ~~~ 192 (411)
.+-
T Consensus 504 YfL 506 (668)
T COG4946 504 YFL 506 (668)
T ss_pred EEE
Confidence 543
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=2.9e-06 Score=74.66 Aligned_cols=192 Identities=9% Similarity=-0.034 Sum_probs=121.3
Q ss_pred EeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEc-CCeEEEE-EcCeEEEEEcCCceeeEEEe
Q 015198 93 MLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV-LEHKIYVYSFVDLKLLHQIE 169 (411)
Q Consensus 93 ~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~dg~i~iwd~~~~~~~~~~~ 169 (411)
..|.+ ++.++++.-.. +.|..|+..+++. ..+.... ...+.+. +++.+++ ..+.+.++|+.+++......
T Consensus 5 p~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEE
T ss_pred eEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEee
Confidence 45665 56666665544 8999999777654 3344444 6677777 7777777 67778888998886655444
Q ss_pred cc--C-CCcceEEEccCCCceEEEEecCCC-------CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE-EEcCCC
Q 015198 170 TL--A-NLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA-TASTRG 238 (411)
Q Consensus 170 ~~--~-~~~~~~~~~~~~~~~~l~~~g~~d-------g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~-s~s~dg 238 (411)
.. . .......+..++++.+.+...... |.|..++..+ .+..+...-...+.|+|+|+++.|+ +-+..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeecccccc
Confidence 32 2 334555677777777554422111 4566555553 3444444455678999999999776 556667
Q ss_pred eEEEEEECCCCce----EEEE-eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 239 TLIRIFNTVDGTR----LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 239 ~~I~vwd~~~~~~----~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
. |..|++..... ...+ ......+..-.+++..+|++.++....+.|.+++-+ |+
T Consensus 157 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 157 R-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp E-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred e-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 7 99999853221 1222 111122357889999999988887788899999977 54
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=9.6e-09 Score=90.73 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=104.5
Q ss_pred EEEcCCeEEEE---EcCeEEEEEcCC----ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEE
Q 015198 139 VKLSRDRIVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL 211 (411)
Q Consensus 139 ~~~~~~~~~~~---~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~ 211 (411)
+..++.+++++ .+....++++.. -+++........+..+.....+.. ..++-..+....+.+|.....+...
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeecccccCcch
Confidence 34455666666 233444444422 233333333333333333333322 2232223345555566555456667
Q ss_pred EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+.+|-..++.++|+||+++|+++..|.. |||-....--.+..+.-+ |..-|..++.-++ +.|++++.|++|++||+.
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEecc
Confidence 7899999999999999999999999999 999888776666666655 8889999998764 668999999999999999
Q ss_pred ccccCC
Q 015198 292 VRVVGE 297 (411)
Q Consensus 292 ~~~~~~ 297 (411)
+|+...
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 999773
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-07 Score=85.62 Aligned_cols=238 Identities=10% Similarity=0.097 Sum_probs=152.3
Q ss_pred CCeEEEEEcCCCCEEEEEe---C---------CcEEEEecCCCcceEEeecCCCCE-EEEEEeccCCeEEEEecCCCCCC
Q 015198 45 IELISVSWNQDYGCFAAGT---S---------CGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~---d---------g~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~~ 111 (411)
..|.-+.|||..+||++-+ . ..+.|||+.++........-.... .-.-+.|+.|..+++--..
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence 3588999999999999854 1 468999999865443322211222 2233567778877776554
Q ss_pred CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198 112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (411)
..|.||+..+...+..-. ....|....|+|.+.+++ .-..+.+..+.+++.++.-..+. +..+.+.|
T Consensus 326 --~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhW 401 (698)
T KOG2314|consen 326 --NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHW 401 (698)
T ss_pred --ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEe
Confidence 689999966643332222 457889999999999998 12467788887777776665443 35677888
Q ss_pred CCCceEEEEecC---------CCCeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEc--CCCeEEEEEECCCC-
Q 015198 183 HSSTSVLACPGL---------QRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAS--TRGTLIRIFNTVDG- 249 (411)
Q Consensus 183 ~~~~~~l~~~g~---------~dg~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s--~dg~~I~vwd~~~~- 249 (411)
..+|.+|++--. .-..+.|...+.+.+.. .-.-...|...+|-|.|..+++-+ .....+.+|.+++.
T Consensus 402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 888888765211 11122222222221111 112356788899999998766533 22333889988732
Q ss_pred ---ceEEEEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEccccc
Q 015198 250 ---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRV 294 (411)
Q Consensus 250 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~ 294 (411)
+++..+. ....+.+.|+|.|++++.+. ..|.+.++|+....
T Consensus 482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 2333333 34578899999999988764 46789999998644
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5e-07 Score=85.35 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=122.0
Q ss_pred EEEEEeccCCeEE-EEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCC
Q 015198 89 RIVEMLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD 161 (411)
Q Consensus 89 ~~~~~~~~~~~~~-l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~ 161 (411)
......|+|++.. ++..+.+. ....|.++|+.+++........+......|+|||..++ .+..|+++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5667889998752 33222110 12689999998887766555666677788999997666 246799999887
Q ss_pred ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC--
Q 015198 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-- 237 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-- 237 (411)
++.. .+..... ......++|++..|+++....+ .|++.+..+.....+...... ...|+|||++|+.....
T Consensus 267 g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 KTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence 7643 3432222 1223356667777777655555 455555555544444322212 24899999988766543
Q ss_pred -------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198 238 -------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV 295 (411)
Q Consensus 238 -------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~ 295 (411)
.. |.+.|+.+++.. .+... .......|+|||+.|+....++ .+.+.+++...+
T Consensus 342 ~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 342 NEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred cccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 25 889999888653 34332 1233578999999887666443 366777765443
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=7.3e-09 Score=106.62 Aligned_cols=194 Identities=10% Similarity=0.169 Sum_probs=142.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
..+-..|.++.=+|...+.++|+ ||.|++|.....+.+..... .+...+..+.|+.+|..+..+..| |.+.+|
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLW 2278 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccCCceeeeccC-----Cceeec
Confidence 34556788888899999999999 99999999987777665544 455888999999998888777777 999999
Q ss_pred ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCC--c-eeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD--L-KLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
... .++....+ |.....++.|-.....-+ .++.+.+||.-- + .+++ ..|....++.++. |+.++|+
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~--P~~qlli- 2352 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA--PKHQLLI- 2352 (2439)
T ss_pred ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc--CcceEEE-
Confidence 966 45555555 777788888776333333 578999999732 2 2333 6677644555544 4555555
Q ss_pred ecCCCCeEEEEEcCCcceE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198 192 PGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (411)
+|+.+|.|++|+...+.+. .++. ++ ...++++|+..|. |+||++..-..++++..
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 5889999999998765432 2322 44 5568999999999 99999988887777764
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=5.4e-09 Score=90.40 Aligned_cols=253 Identities=13% Similarity=0.171 Sum_probs=156.0
Q ss_pred CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-c----EEEEEe-e------------cCceeEEEEcCCeEE-
Q 015198 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-R----CIGEFA-F------------RSDVRSVKLSRDRIV- 147 (411)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-~----~~~~~~-~------------~~~i~~~~~~~~~~~- 147 (411)
..-+.++-|...|.+|++|..+ |.|.++.-... + ....++ | ...|..+.|.+++..
T Consensus 25 adiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3446677888999999999988 99999973322 1 112222 2 256888999887543
Q ss_pred --EE--EcCeEEEEEcCCceeeE--------------------EE--------------eccCCCcceEEEccCCCceEE
Q 015198 148 --VV--LEHKIYVYSFVDLKLLH--------------------QI--------------ETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 148 --~~--~dg~i~iwd~~~~~~~~--------------------~~--------------~~~~~~~~~~~~~~~~~~~~l 189 (411)
++ .|.+|++|.+....... .+ ..+.+...+-+++.+.|...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 22 79999999884321100 00 111222344566777777777
Q ss_pred EEecCCCCeEEEEEcCC--cc--eEEEecc-----ccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCce----EEEE
Q 015198 190 ACPGLQRGQVRIEHFGL--NM--IKLINAH-----DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR----LQEV 255 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~--~~--~~~~~~~-----~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~----~~~~ 255 (411)
+++ .|=.|.+|.... +. +.-++.+ ..-|++..|+|.. +.++..+..|. |++-|++...+ ...+
T Consensus 180 lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 180 LSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhhh
Confidence 653 565666687653 11 2223333 3468889999865 57788888999 99999984321 0111
Q ss_pred eCCCC----------CcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc-ccCCCCCCCCCCCCcccccccCCCCCccccC
Q 015198 256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR-VVGEDSSSSLSTPSQSTELLNHSSSFDTLIS 324 (411)
Q Consensus 256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (411)
..... -..|..+.|+++|+++++-.. -+|++||++-. ++.+....|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh---------------------- 313 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH---------------------- 313 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh----------------------
Confidence 11101 136788999999999987543 46999999543 333322222
Q ss_pred CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.++..-+...+..+-.|..| -|+|+.+ ..+++|+....|++|.++.
T Consensus 314 -----------~~lr~kLc~lYEnD~IfdKF--------ec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 314 -----------EYLRSKLCSLYENDAIFDKF--------ECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred -----------HhHHHHHHHHhhccchhhee--------EEEEcCCcceEecccccceEEEecCCC
Confidence 22332333444444444443 4889887 7788888899999998664
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=4.1e-07 Score=82.25 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=129.2
Q ss_pred ccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-------------Cce---eEEEEcCCeEEEE--EcCeEEE
Q 015198 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-------------SDV---RSVKLSRDRIVVV--LEHKIYV 156 (411)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-------------~~i---~~~~~~~~~~~~~--~dg~i~i 156 (411)
.+.++..++-... |.|.++|..+... ..+.-. .+. ...+.. +|.+++ ..|+..+
T Consensus 274 ~nsDGkrIvFq~~------GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi 345 (668)
T COG4946 274 ANSDGKRIVFQNA------GDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFI 345 (668)
T ss_pred cCCCCcEEEEecC------CcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEE
Confidence 3456665555433 8999999766432 222200 011 111122 344444 7888888
Q ss_pred EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC-eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc
Q 015198 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS 235 (411)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 235 (411)
.+...+-.++. ++...+....+..++++ ++. |..|| .+-|++..+..++.+...-+.|.++..+++|++++.+.
T Consensus 346 ~~~~~~~~iqv--~~~~~VrY~r~~~~~e~--~vi-gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 346 MRPWDGYSIQV--GKKGGVRYRRIQVDPEG--DVI-GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred ECCCCCeeEEc--CCCCceEEEEEccCCcc--eEE-eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 88655544432 23334566666666664 333 55777 78889999999999999999999999999999999999
Q ss_pred CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC----cEEEEEcccccc
Q 015198 236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRVV 295 (411)
Q Consensus 236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~~ 295 (411)
.... |.+.|+.+|.....-+. ..+-|+.+.|+|++++||-+--+| .|+++|+.+++.
T Consensus 421 dr~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 421 DRFE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CceE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 8888 99999999986533232 567899999999999999876665 699999998764
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.94 E-value=6.5e-06 Score=72.44 Aligned_cols=212 Identities=14% Similarity=0.084 Sum_probs=134.2
Q ss_pred EEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 49 SVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 49 ~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
++.|.+ ++.++++.. .+.|..|+.++.... ...+ .. ...+.+. +++.++++.. +.+.++|..+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence 578998 566666665 898999998874432 2333 22 4455555 6677777754 455666988886
Q ss_pred EEEEEee------cCceeEEEEcCCeEEEEE---------c--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198 126 CIGEFAF------RSDVRSVKLSRDRIVVVL---------E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 126 ~~~~~~~------~~~i~~~~~~~~~~~~~~---------d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
....... ....+.+++.++|.+.+. . |.|+.++.. ++.......- . ..-.+.+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~--~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-G--FPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-S--SEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-c--cccceEECCcchh
Confidence 5544442 346788999999987771 1 668888876 5544443332 2 2334555556666
Q ss_pred EEEecCCCCeEEEEEcC--Ccc---eEEE-ecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC
Q 015198 189 LACPGLQRGQVRIEHFG--LNM---IKLI-NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~--~~~---~~~~-~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (411)
|+++-+..+.|..++.. ... ...+ ... .+..-.+++..+|++.++....+. |.++|.+ |+.+..+...
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p-- 223 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP-- 223 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--
Confidence 66556677777775543 221 1222 222 234778999999998887777888 9999975 9998888864
Q ss_pred CcceEEEEeC-CCCCEEEEEe
Q 015198 261 RAEIYSIALS-PNVQWLAVAS 280 (411)
Q Consensus 261 ~~~v~~l~~s-pdg~~l~s~s 280 (411)
...+++++|. ++.+.|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 3479999994 6766665443
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=1.1e-07 Score=80.72 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=115.3
Q ss_pred CeEEEEECCCCcEEE--EEe--ecCceeEEEEcC---CeE-EEE---EcCeEEEEEcCCceeeEEEecc---CCCc-ceE
Q 015198 114 TKVIIWDDHQSRCIG--EFA--FRSDVRSVKLSR---DRI-VVV---LEHKIYVYSFVDLKLLHQIETL---ANLR-GLC 178 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~--~~~--~~~~i~~~~~~~---~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~---~~~~-~~~ 178 (411)
|.+.++++...+.+. +++ ....+..+.|.. ++. .++ ..|.|.+|..........+.+- .-.+ ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 677777766654433 222 344556666642 333 222 6788888876543333333221 1111 234
Q ss_pred EEccCCCceEEEEecCCCCeEEE-EEcC--CcceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECC-CCceEE
Q 015198 179 CLSHHSSTSVLACPGLQRGQVRI-EHFG--LNMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTV-DGTRLQ 253 (411)
Q Consensus 179 ~~~~~~~~~~l~~~g~~dg~i~i-~~~~--~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~-~~~~~~ 253 (411)
++.++..+.-+++ +..+|.+.+ +... .+.++..+.|+.+++...|+.. .+++.+|+.|+. +..||++ .++.+.
T Consensus 126 slD~~~~~~~i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 126 SLDISTSGTKIFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIW 203 (339)
T ss_pred EEEeeccCceEEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcceee
Confidence 4555555555554 567888875 3322 3455688999999999999853 368899999999 9999998 344443
Q ss_pred EEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEcccccc
Q 015198 254 EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 254 ~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.- ...|...|.+|.-+| .+.+|++|+.|..|++||.++-.+
T Consensus 204 ~n-~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 204 HN-SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred ec-ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 31 222777899998885 677999999999999999996543
No 280
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.91 E-value=4.2e-06 Score=73.54 Aligned_cols=238 Identities=18% Similarity=0.178 Sum_probs=148.7
Q ss_pred CeEEEEEcC-CCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 46 ~V~~l~~s~-~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
....++.+| ....++.+. .....+||..+.+......-..+....=.-.|++++.+|.+...|.....|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 456666777 44567899887665544432223333334678999999988877755567999999988
Q ss_pred -CCcEEEEEe-ecCceeEEEEcCCeE-EEEE--------------------cCeEEEEEcCCceeeEEEec--cCCCcce
Q 015198 123 -QSRCIGEFA-FRSDVRSVKLSRDRI-VVVL--------------------EHKIYVYSFVDLKLLHQIET--LANLRGL 177 (411)
Q Consensus 123 -~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~--------------------dg~i~iwd~~~~~~~~~~~~--~~~~~~~ 177 (411)
+.+.+.++. +.-.-..+.+.||+. +++. +..+...|..+|+++.+... ..+...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 567777776 555566788999994 4432 23455566677887776544 2233355
Q ss_pred EEEccCCCceEEEEecCCCC-------eEEEEEcCCcceEEEe-------ccccceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198 178 CCLSHHSSTSVLACPGLQRG-------QVRIEHFGLNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRI 243 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg-------~i~i~~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (411)
..++.++++..++. .-..| .|.++... ..+..+. .-...+-+|+++++|.++++.+-.|..+.+
T Consensus 166 RHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 55666665544332 21111 11112221 2222222 234678899999999988877776655999
Q ss_pred EECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
||..+++.+..... ..+..++-.+++ ++++ +..|. ++.+...
T Consensus 244 ~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~s-sG~G~--~~~~~~~ 285 (305)
T PF07433_consen 244 WDAATGRLLGSVPL----PDACGVAPTDDG-FLVS-SGQGQ--LIRLSPD 285 (305)
T ss_pred EECCCCCEeecccc----CceeeeeecCCc-eEEe-CCCcc--EEEccCc
Confidence 99999998866654 247778877776 4544 44454 4444433
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=3.6e-07 Score=76.77 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=145.5
Q ss_pred EEEEcCC-----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEe-ccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 49 SVSWNQD-----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML-FRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 49 ~l~~s~~-----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
.+.|-|- ..+||.|+ .|.+.+|...+.+..... ...+...+.-.. +.....-+.-++.| .++++.++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~~~ 145 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASND-----HTGKTMVV 145 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCC-----cceeEEEE
Confidence 4555553 34788887 999999999875543332 212222111111 11111122233333 77777775
Q ss_pred CCCcEEEEEeec-CceeEEEEcCCeEEEE---EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 122 HQSRCIGEFAFR-SDVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 122 ~~~~~~~~~~~~-~~i~~~~~~~~~~~~~---~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
.-+......... -.+.++.+++|+++.+ ....|..|.+.. ++.+..+..........+.+++.....+|+ +..|
T Consensus 146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Qd 224 (344)
T KOG4532|consen 146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQD 224 (344)
T ss_pred ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-EecC
Confidence 544333222221 3488999999999988 456788888843 333333333333334556666666666665 7799
Q ss_pred CeEEEEEcCCc------ceEEEeccccceeEEEecCCCC--EEEEEcCCCeEEEEEECCCCceEEEEeCCCC------Cc
Q 015198 197 GQVRIEHFGLN------MIKLINAHDSHIACFTLTLDGL--LLATASTRGTLIRIFNTVDGTRLQEVRRGVD------RA 262 (411)
Q Consensus 197 g~i~i~~~~~~------~~~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~------~~ 262 (411)
|.+.||+.+.- ....-..|.+.+..+.|++.|. +|+..-.-+. +.+.|+++++..+.+..... ..
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCcccccccccc
Confidence 99999887642 1222346899999999998774 5666666677 99999999876555443211 13
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.|..-.|+.++.-+.+.+++. +.-|++.+...
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR 335 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNELQ-GAEYNILSRSR 335 (344)
T ss_pred ccccccccCCCcccccccchh-hheeeccccce
Confidence 477888888888777776664 67777776554
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=4.4e-06 Score=78.99 Aligned_cols=172 Identities=12% Similarity=0.011 Sum_probs=108.0
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEE-EE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIV-VV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
..|.+-|..... .+.+.....+....|+||+.. ++ . +..|+++|+.+++...... ... ......++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g--~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG--MLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC--cEEeeEECCCC
Confidence 577777754433 444443347788999999974 44 2 4679999998876654443 222 22334456677
Q ss_pred eEEEEecCCC--CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCc
Q 015198 187 SVLACPGLQR--GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 187 ~~l~~~g~~d--g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~ 262 (411)
..|+++.+.+ ..|++.+..+.....+..+........|+|||+.|+..+.. +. .|++.|+.+++.......+ .
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--
Confidence 6666654444 45666565566666666555444566899999977765533 21 2888899887764333221 1
Q ss_pred ceEEEEeCCCCCEEEEEeCC---------CcEEEEEccccc
Q 015198 263 EIYSIALSPNVQWLAVASDK---------GTVHIFSLRVRV 294 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~ 294 (411)
....|+|||++|+..... ..|.+.|+++++
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 124899999998876643 257777877765
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=4.8e-08 Score=83.57 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=134.1
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---eEEeecCCCCE------------EEEEEeccC---Ce
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGF------------RIVEMLFRC---NI 99 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~---~~ 99 (411)
......+.|+++.|...|.||++|. .|.|.+|.-+.... .+..+++.|.. .+..+.|.. ..
T Consensus 21 ~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 21 NSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 3445667899999999999999999 89999998764331 11122323322 233333332 23
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCcE--EEEEee--------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee
Q 015198 100 LALVGAGDNSQYPPTKVIIWDDHQSRC--IGEFAF--------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~~~~--------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~ 165 (411)
.+++++.+ .+|++|.+..... +..-.. .+++++. ....+- .|..|....
T Consensus 101 hFLlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~----~~l~lprls~hd~iiaa~p------- 163 (460)
T COG5170 101 HFLLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST----KELLLPRLSEHDEIIAAKP------- 163 (460)
T ss_pred eEEEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCH----HHhhcccccccceEEEecc-------
Confidence 45555544 9999999755422 111111 1222111 111110 111111111
Q ss_pred EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccc-----cceeEEEecCCC-CEEEEEc
Q 015198 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHD-----SHIACFTLTLDG-LLLATAS 235 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~-----~~i~~l~~sp~g-~~l~s~s 235 (411)
..+....++..+-+++++.+...++++ .|=.|.+|..... .+..++.|. .-|++..|+|.. ..+...+
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 111222233355567777777777653 5656666876531 233344443 458888999865 4667778
Q ss_pred CCCeEEEEEECCCCc------eEEEE--eCCC------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 236 TRGTLIRIFNTVDGT------RLQEV--RRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 236 ~dg~~I~vwd~~~~~------~~~~~--~~~~------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
..|. |++-|++... .+... .+-. -...|..+.|+++|+++++-.. -+|+|||++..+.
T Consensus 242 SkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 242 SKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred CCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 8899 9999998431 11111 1100 1236788999999999987654 4699999987653
No 284
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.87 E-value=1.9e-06 Score=78.72 Aligned_cols=237 Identities=12% Similarity=0.067 Sum_probs=154.1
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCC-CCEEEEEEeccCC--eEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
-+.|+.+.+++|--....+.|+++.. . .....++. ....+..+.++|. ...++.-.-.....++.+++|.+..+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~-n-~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITD-N-IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCC-c-cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 67788888777755567788888621 1 11111211 2356777777775 222333222222345899999998888
Q ss_pred EEEEEe-ecCceeEEEEcCCeEEEE--------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 126 CIGEFA-FRSDVRSVKLSRDRIVVV--------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 126 ~~~~~~-~~~~i~~~~~~~~~~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
.+.+.. ++..=..+.|++.|.+++ ....++++++.... +.....-.+++...+|.+..++ +.+
T Consensus 214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~-F~v 291 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSR-FAV 291 (561)
T ss_pred eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCc-eeE
Confidence 777766 555556788998887776 13678888886332 2222233455556666666654 334
Q ss_pred EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEE-EEeCCCCCcceEE
Q 015198 191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQ-EVRRGVDRAEIYS 266 (411)
Q Consensus 191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~-~~~~~~~~~~v~~ 266 (411)
++|..+-.+.+.+.+++....+ ....=+.+.|+|.+++++.++-| |. |.+||........ .+.+. ...-
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~~----n~s~ 364 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNGL----NTSY 364 (561)
T ss_pred EecccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeecC----CceE
Confidence 5577888888888888744433 34455678899999999987655 66 9999976554433 55542 3455
Q ss_pred EEeCCCCCEEEEEe------CCCcEEEEEccccccC
Q 015198 267 IALSPNVQWLAVAS------DKGTVHIFSLRVRVVG 296 (411)
Q Consensus 267 l~~spdg~~l~s~s------~dg~I~vwd~~~~~~~ 296 (411)
+.|+||++++.+.. .|..|.|||+.....-
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 78999999988764 3778999999876543
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=2.6e-07 Score=88.28 Aligned_cols=235 Identities=11% Similarity=0.137 Sum_probs=157.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC------------CeEEEEecCCCCCCCC
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC------------NILALVGAGDNSQYPP 113 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~s~~~d~~~~d 113 (411)
.-.++.|+|.| +||.|+...|.+-|..+.+.+...+ .|...+..+.|.| ....+++++..
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~----- 88 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS----- 88 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence 35678899877 8999998889999988766665555 4556666666543 13456777766
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcC---Ce--EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR---DR--IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS- 184 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~---~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (411)
|.|.+||...+..+..+. +..++..++|-+ +. .+++ .-..+.+|+..+|+.+..+....... .+|..+|
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL--s~f~~DPf 166 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL--SCFRVDPF 166 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce--eeeeeCCC
Confidence 999999999998888888 678888888865 23 2222 57889999999999988776555533 3444443
Q ss_pred CceEEEEecCCCCeEEE-EEcCC-------cceEEEecccc-------------------------ceeEEEecCCCCEE
Q 015198 185 STSVLACPGLQRGQVRI-EHFGL-------NMIKLINAHDS-------------------------HIACFTLTLDGLLL 231 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~l~~sp~g~~l 231 (411)
+...+...| ..|.+.+ .+... +..+.-..|.. ....++|+|.-+.+
T Consensus 167 d~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 167 DSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 223444445 4666666 33221 22222222221 01235667766544
Q ss_pred EEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198 232 ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 232 ~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~ 294 (411)
+-...... +.|+|++-..++..+.. ..+.+.-+.+-|+++ .|++.-.||.+.+|-.+.-.
T Consensus 246 lfi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 246 LFITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 44455666 99999988888887776 445555667777654 68899999999999776543
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=3.9e-06 Score=79.34 Aligned_cols=223 Identities=11% Similarity=0.029 Sum_probs=125.1
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~ 134 (411)
+..++++. ++.+.-+|.++++...+..+.. .. ....... ++.+++... + +.|..+|.++|+.+..+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EA-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ce-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCCC
Confidence 34566666 8899999999888887776522 11 1111111 344555433 3 899999999999998876432
Q ss_pred ce------eEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCC--cc-----eEEEccCCCceEEEEecCCCCeEE
Q 015198 135 DV------RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RG-----LCCLSHHSSTSVLACPGLQRGQVR 200 (411)
Q Consensus 135 ~i------~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~g~~dg~i~ 200 (411)
+. .+.....+..++. .++.+..+|..+|+.+......... .. .....|--.+..+++ ++.+|.+.
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~-~~~~g~l~ 269 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA-LAYNGNLV 269 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE-EEcCCeEE
Confidence 21 1112223333333 6889999999999877655321110 00 000111001122333 33566666
Q ss_pred EEE-cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198 201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (411)
..+ .+++.+-.... .....+. ..+..|+.++.+|. +..+|..+|+.+.......+ ....+... .+..|+.+
T Consensus 270 ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~ 341 (394)
T PRK11138 270 ALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVG 341 (394)
T ss_pred EEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEE
Confidence 633 34444332221 1111122 24567777888999 99999999987654432101 11122222 24567889
Q ss_pred eCCCcEEEEEccccccC
Q 015198 280 SDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 280 s~dg~I~vwd~~~~~~~ 296 (411)
+.||.|++.|..+|+..
T Consensus 342 ~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 342 DSEGYLHWINREDGRFV 358 (394)
T ss_pred eCCCEEEEEECCCCCEE
Confidence 99999999999988743
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=2.2e-06 Score=74.94 Aligned_cols=215 Identities=17% Similarity=0.154 Sum_probs=130.4
Q ss_pred CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEE-EEc
Q 015198 64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV-KLS 142 (411)
Q Consensus 64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~-~~~ 142 (411)
+|.|..||..+++.+....+..............++.+++.. .+ +.|..||..+|+.+..+.....+... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence 578888998888888887763222222222222344444443 33 99999999999999988854443332 444
Q ss_pred CCeEEEE-EcCeEEEEEcCCceeeEEE-eccCCCc---ceEEEccCCCceEEEEecCCCCeEEEEE-cCCcceEEEeccc
Q 015198 143 RDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLR---GLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLINAHD 216 (411)
Q Consensus 143 ~~~~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~ 216 (411)
.+..++. .++.|+.+|..+|+.+... ....... ......... ..+++ +..++.|...+ .+++.+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYV-GTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEE-EETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec--CEEEE-EeccCcEEEEecCCCcEEEEeecCC
Confidence 4444444 5789999999999999884 3321111 112222222 33433 33477787755 5566666665533
Q ss_pred cc----------e-eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcE
Q 015198 217 SH----------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285 (411)
Q Consensus 217 ~~----------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I 285 (411)
.. + ..+.+ .++ .++.++.++..+.+ |+.+++.+..... + .+..+ ...++..|+.++.++.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~--~--~~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKPI--S--GIYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp T-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEECS--S---ECEC-EECCCTEEEEEETTTEE
T ss_pred CCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEecC--C--CccCC-ceeeCCEEEEEeCCCEE
Confidence 22 1 22333 345 67777777752555 9999997643321 1 23221 34677788888899999
Q ss_pred EEEEcccccc
Q 015198 286 HIFSLRVRVV 295 (411)
Q Consensus 286 ~vwd~~~~~~ 295 (411)
..||+++|+.
T Consensus 225 ~~~d~~tG~~ 234 (238)
T PF13360_consen 225 YALDLKTGKV 234 (238)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCCE
Confidence 9999999975
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=3.7e-07 Score=86.50 Aligned_cols=228 Identities=11% Similarity=0.030 Sum_probs=147.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
+.++||.+.|..+.|+...+.|.+.. +|-|.+|-+-.+.......-......+.++.|..+|..+.-.-.| |.|
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----Gav 139 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED-----GAV 139 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CCE
Confidence 36899999999999999999999988 999999998765543333223456778899999988777766555 888
Q ss_pred EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-------eeeEEEec----cCCCcceEEEc
Q 015198 117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-------KLLHQIET----LANLRGLCCLS 181 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-------~~~~~~~~----~~~~~~~~~~~ 181 (411)
.|=.++.++ +.--. .......+.|++|...+. .+|.+++||.+.. .+.....+ ....+...++.
T Consensus 140 IVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 140 IVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 776654433 22111 122344678999987766 7899999997431 11111110 11111112221
Q ss_pred -----c-CCCceEEEEecCCCCeEEE-EEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCe--------EEEEEE
Q 015198 182 -----H-HSSTSVLACPGLQRGQVRI-EHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------LIRIFN 245 (411)
Q Consensus 182 -----~-~~~~~~l~~~g~~dg~i~i-~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------~I~vwd 245 (411)
+ -|+...+++ +..+|.+.| -..+ ..++.. . ..-.+..+.|+++|..||.++.+.. .|.+|.
T Consensus 219 ~g~~~~v~pdrP~lav-cy~nGr~QiMR~eND~~Pvv~-d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAV-CYANGRMQIMRSENDPEPVVV-D-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred cCccccCCCCCCEEEE-EEcCceehhhhhcCCCCCeEE-e-cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 1 235556665 567888888 2222 233322 2 2367888999999999999886531 266665
Q ss_pred CCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198 246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (411)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (411)
.-|+.+.+++. ....|++++|-..|-.+|
T Consensus 296 -p~G~i~gtlkv--pg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 296 -PYGHIVGTLKV--PGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred -cchhheEEEec--CCceeeeeEEcCCceEEE
Confidence 46777888876 556888888876554443
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.1e-08 Score=93.77 Aligned_cols=202 Identities=15% Similarity=0.174 Sum_probs=142.5
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-------CcEEEEEe-ecCceeEEEEcCCeEEEE-EcCe
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHK 153 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~ 153 (411)
+.+|...+..+.--.+..-+++++.| .+|++|.++. ..+..+++ |+.+|.++.|-.+.+.++ .|+.
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 34555556665555666778888887 9999999653 23445555 899999999999998888 8999
Q ss_pred EEEEEcCCceeeEEEec--cCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEE-----eccccceeEEEec
Q 015198 154 IYVYSFVDLKLLHQIET--LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLI-----NAHDSHIACFTLT 225 (411)
Q Consensus 154 i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~-----~~~~~~i~~l~~s 225 (411)
|++||.--++++.++.. .......+..-++-+..++++.++...+|++.+. ...-...+ .+.++.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999877777654422 1222233333344344555554577889999544 33333333 3445678999999
Q ss_pred CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEE-EEcccc
Q 015198 226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI-FSLRVR 293 (411)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~v-wd~~~~ 293 (411)
+.|+.++.+-.+|. |.+.|.++|+.+..++. .+.....++ .|..+.|+....|.++.| |..-.|
T Consensus 886 ~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred cCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999 99999999999887765 333444444 366677888888888888 866554
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=8.7e-08 Score=85.94 Aligned_cols=245 Identities=11% Similarity=0.019 Sum_probs=166.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCC-CCCCCCCeEEEE
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVIIW 119 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~d~~i~vw 119 (411)
|.+.|+.+.-.. .+++.+++ ||.++.|.-.. ....+...++.|-..+..+..+-++..+.+.+. | ..++++
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD-----HSVKVF 81 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc-----cceeEE
Confidence 677777765543 56888899 99999998664 333444555566666777777888888888666 6 999999
Q ss_pred ECCCCcEEEEEee---cCceeEEEEcCC-e--EEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCCCceE
Q 015198 120 DDHQSRCIGEFAF---RSDVRSVKLSRD-R--IVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 120 d~~~~~~~~~~~~---~~~i~~~~~~~~-~--~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
|+++-..+..++. ++.+..+ .++. - .+.+ .++.+.++|-.... ....-..|..++....+.+..+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-- 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-- 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc--
Confidence 9888776655552 3333222 2222 1 2222 68999999975432 22333557777776666666552
Q ss_pred EEEecCCCCeEEEEEcCC---cc-------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198 189 LACPGLQRGQVRIEHFGL---NM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~---~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (411)
+ .+....|.|.-|...+ .+ +..+........++.|+|+|..+.+-+.|.. |+++++++|+.+
T Consensus 159 ~-vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklv 236 (558)
T KOG0882|consen 159 A-VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLV 236 (558)
T ss_pred e-eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhh
Confidence 3 3466678898898774 00 1112234556789999999999999999999 999999998766
Q ss_pred EEEeCC-------------------------------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198 253 QEVRRG-------------------------------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS 299 (411)
Q Consensus 253 ~~~~~~-------------------------------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 299 (411)
+.+... .....-+.+.|...|++|+-++-=| |+|.++.++...+.+
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 554320 0112335678888999999999888 999999999876533
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=1.2e-05 Score=84.61 Aligned_cols=195 Identities=10% Similarity=0.084 Sum_probs=116.2
Q ss_pred EeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec---------------CceeEEEEcCCeE--EEE--EcC
Q 015198 93 MLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR---------------SDVRSVKLSRDRI--VVV--LEH 152 (411)
Q Consensus 93 ~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~---------------~~i~~~~~~~~~~--~~~--~dg 152 (411)
+..++ ++.++++.... +.|++||.. ++.+..+... .....+++++++. +++ .++
T Consensus 573 vavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred EEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 34443 45555665555 899999964 5554444311 1347788888754 333 457
Q ss_pred eEEEEEcCCceeeEEEeccC--------C-------CcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc--
Q 015198 153 KIYVYSFVDLKLLHQIETLA--------N-------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH-- 215 (411)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-- 215 (411)
.|+++|+.++. +..+.+.. . -.....+++++++..+.++...++.|++|+.....+..+.+.
T Consensus 647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 79999987654 33332110 0 001123444553333444455678888887765544443221
Q ss_pred -------------ccceeEEEecCCCCEEE-EEcCCCeEEEEEECCCCceEEEEeC-----------CCC--------Cc
Q 015198 216 -------------DSHIACFTLTLDGLLLA-TASTRGTLIRIFNTVDGTRLQEVRR-----------GVD--------RA 262 (411)
Q Consensus 216 -------------~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~~~~~~~~~~~-----------~~~--------~~ 262 (411)
-.....|+++|+|+.|+ +-+.++. |++||+.++.......+ +.. -.
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 12345699999998555 4455677 99999987654211100 000 11
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
....++++++|+++++-..++.|++||..++..
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 346889999999888888899999999987754
No 292
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=8.2e-07 Score=82.44 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=118.6
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR 133 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~ 133 (411)
...++-|. .|.|.+|+...++......-..|...+.++.++.+...+-+++.| +.+..|+....+.++... .+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-----~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-----LKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-----eeEEEEecccceeeeeeccCC
Confidence 34677788 999999999987766666555788888889999998899999888 999999999999999988 67
Q ss_pred CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccC--C-CceEEEEecCCCCeEEEEEcCC
Q 015198 134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH--S-STSVLACPGLQRGQVRIEHFGL 206 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~g~~dg~i~i~~~~~ 206 (411)
..+.+++++||+..++ ..+.|++||+++++.+..|.+|..++..+.|... + .|.++..+...+..+.+|....
T Consensus 145 ~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8899999999998888 8899999999999999999999998887777655 2 1445555444444555576554
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.71 E-value=1.7e-07 Score=88.99 Aligned_cols=240 Identities=11% Similarity=0.094 Sum_probs=150.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC---eEEEEecCCCCCCCCCeEEE
Q 015198 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~d~~i~v 118 (411)
.-.+.+.++.++|.|+-+|.++.-.+.+-|++..-.....--+...-.+....|++. ...+++.+. ..-.+
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaii 95 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAII 95 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc------chhhh
Confidence 345678899999999999999955567777764222221111122333334445542 355666554 66778
Q ss_pred EECCC--CcEEEEEe--ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEE
Q 015198 119 WDDHQ--SRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 119 wd~~~--~~~~~~~~--~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (411)
|++.. .+.+.-+. |...|+.+.|+|+..-+. .|..++.||+++.. .+..+..-.....-+.+..-. ...+
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-p~vl 174 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-PNVL 174 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-cchh
Confidence 98643 34444433 788999999999877665 68999999998753 344444333333444554432 2334
Q ss_pred EEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcce
Q 015198 190 ACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEI 264 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v 264 (411)
| .+....|.+|+.+ +.++..+++|...|+.++|+.- ...+.+.+.|++ |+.||...... .+++. ...+|
T Consensus 175 a--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~pi 248 (1081)
T KOG0309|consen 175 A--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPI 248 (1081)
T ss_pred h--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcc
Confidence 3 3466788898865 4677888999999999998753 346889999999 99999865432 22332 34478
Q ss_pred EEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198 265 YSIALSPNVQ--WLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 265 ~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~ 294 (411)
+.-.+-|-|. ++.-.-.+..+.+++.++-.
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d 280 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD 280 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchh
Confidence 8888888554 33322223355566555443
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=4.1e-06 Score=70.58 Aligned_cols=189 Identities=12% Similarity=-0.000 Sum_probs=120.7
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCce---eEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccC
Q 015198 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDV---RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA 172 (411)
Q Consensus 99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i---~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 172 (411)
-..++.++.. |.+.+|...+.+....+- +...| ...+-+.-...++ .|.++++++++-+...... |.
T Consensus 84 c~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~ 156 (344)
T KOG4532|consen 84 CVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HN 156 (344)
T ss_pred ccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ec
Confidence 3456666555 999999988765433322 33222 2233333344455 7888888887544332222 22
Q ss_pred CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cc-eE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NM-IK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~-~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
..+....++.++++.++++.| ....|..+..+. .. +. ........-.+..|+.....+|++..||. +.|||++.
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~ 234 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRN 234 (344)
T ss_pred cccceeeeEEcCCCceEEEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEecc
Confidence 223456677777888998887 455666654443 22 22 22233444567889999999999999999 99999987
Q ss_pred CceEEEE---eCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccccC
Q 015198 249 GTRLQEV---RRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 249 ~~~~~~~---~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
....... ....|.+.+..+.|++-|. +|...-.-+.++|.|++++..-
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 5433222 2334888999999998664 4555556678999999998764
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=9.8e-06 Score=77.85 Aligned_cols=253 Identities=10% Similarity=0.078 Sum_probs=146.1
Q ss_pred CCCCccccCCCCCCeEEEEEcCCC------------CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--
Q 015198 33 GHPQTAFSDVDEIELISVSWNQDY------------GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-- 97 (411)
Q Consensus 33 ~~~~~~~~~~h~~~V~~l~~s~~g------------~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 97 (411)
...+....+-|...|+.+.|.|-. -+||++. .|.|.+||......... +..+...+..+.|-+
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--LSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--hcCCCcchhheeeeecc
Confidence 344556678899999999998741 2566777 99999999986554433 335555666666543
Q ss_pred -C--eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCc-eeEEEEcC-CeEEEE---EcCeEEEEEcC-------Cc
Q 015198 98 -N--ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD-VRSVKLSR-DRIVVV---LEHKIYVYSFV-------DL 162 (411)
Q Consensus 98 -~--~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~-i~~~~~~~-~~~~~~---~dg~i~iwd~~-------~~ 162 (411)
+ ..+++-.+. ..|.+|+..+|+....+..... ..|+.+.| |.+.++ ..|.+.+-+.- .+
T Consensus 122 d~Srd~LlaIh~s------s~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGS------STLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred CcchheeEEecCC------cEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 2 223333332 8999999999999988885444 44588776 323332 56666666541 12
Q ss_pred eeeEEEeccCC-----------------------CcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccc
Q 015198 163 KLLHQIETLAN-----------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH 218 (411)
Q Consensus 163 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~ 218 (411)
+..+.-..|.. ...+..|+++|..+.+.+.. ....+.+.+.. ..++....-..+.
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~ 274 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGG 274 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCC
Confidence 22222222111 00112333343322222222 35566775444 3455555555666
Q ss_pred eeEEEecCCCC--EEEEEcCCCeEEEEEECCC----------------CceEEEEeCCCCCcceEEEEeCCC-CCEEEEE
Q 015198 219 IACFTLTLDGL--LLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIYSIALSPN-VQWLAVA 279 (411)
Q Consensus 219 i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~ 279 (411)
+.-+.+-|+++ .|++.-.||. +.+|-.+. ++....+... .+-.+......|. ...++.-
T Consensus 275 akfv~vlP~~~rd~LfclH~nG~-ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m-~~~rp~~~~~cPs~~sa~avl 352 (1062)
T KOG1912|consen 275 AKFVDVLPDPRRDALFCLHSNGR-LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM-EEFRPVIGASCPSTPSALAVL 352 (1062)
T ss_pred cceeEeccCCCcceEEEEecCCe-EEEEEeeccCccccccchhhccccccceEEEeec-hhcccceeecCCCChhhhhhh
Confidence 66677777664 7899999999 99996543 1222222211 1112222333454 3445555
Q ss_pred eCCCcEEEEEccccccC
Q 015198 280 SDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 280 s~dg~I~vwd~~~~~~~ 296 (411)
-.+|.+.+|++.+|..-
T Consensus 353 ~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 353 YSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred hhcchhHHHhhhcCCcC
Confidence 56888999999987643
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.68 E-value=1.4e-05 Score=75.51 Aligned_cols=224 Identities=12% Similarity=0.060 Sum_probs=128.4
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEE--------EE-EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFR--------IV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
+..+++++ ++.+.-+|.++++......+...... +. ..... ++.+++++ .+ +.+..+|.++|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~-~~-----g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS-EK-----GQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc-CC-----CEEEEEECCCCC
Confidence 44666666 88889999988888887765331100 00 01111 33444443 33 899999999999
Q ss_pred EEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceE-EEccC-CCceEEEEecCCCCeEEE
Q 015198 126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLC-CLSHH-SSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~g~~dg~i~i 201 (411)
.+........+.+--.-.++.+++ .++.++.+|.++|+.+..+.......... ..+|. .++. +++ +..+|.+..
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~-v~~-~~~~g~v~a 219 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG-AIV-GGDNGRVSA 219 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCE-EEE-EcCCCEEEE
Confidence 988887544443321122455555 68899999999999988775432110000 00110 0122 333 345677665
Q ss_pred -EEcCCcceEEEeccc----c---ceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198 202 -EHFGLNMIKLINAHD----S---HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 202 -~~~~~~~~~~~~~~~----~---~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp 271 (411)
+..+++.+....... . ....+.-+| .+..++.++.+|. +..+|..+|+.+...... ....+. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~--~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA--V 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE--E
Confidence 444444433322100 0 011111122 2446667778898 999999999987655431 111222 2
Q ss_pred CCCEEEEEeCCCcEEEEEcccccc
Q 015198 272 NVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 272 dg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
++..|+.++.+|.++.+|..+|+.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcE
Confidence 456788888999999999988864
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=8.7e-08 Score=88.04 Aligned_cols=244 Identities=10% Similarity=0.164 Sum_probs=160.7
Q ss_pred CCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCeEEEEec
Q 015198 32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNILALVGA 105 (411)
Q Consensus 32 ~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 105 (411)
+..-......||...|..++--.+.+-+++++ |.+|++|.+.+... ......+.|...+.++-|-.+...++++
T Consensus 723 ~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 723 FDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred cceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 34444455679999999988777777788888 99999999974221 1233345778888888888888888886
Q ss_pred CCCCCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcC--CeE-EEE---EcCeEEEEEcCCceeeEEEecc--CCC
Q 015198 106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSR--DRI-VVV---LEHKIYVYSFVDLKLLHQIETL--ANL 174 (411)
Q Consensus 106 ~~d~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~--~~~ 174 (411)
. +.|.+||.--++.+..+. ..+.+..+..-+ +.. +++ ...+|+++|.+.++....++.. ..+
T Consensus 803 D-------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 803 D-------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred c-------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 4 899999988777766443 122333333322 222 233 6789999999988877777543 222
Q ss_pred -cceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEE-EECCCCce
Q 015198 175 -RGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI-FNTVDGTR 251 (411)
Q Consensus 175 -~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v-wd~~~~~~ 251 (411)
....+++..+.|..+++ +-.+|.|.+ +.++++.+..+...+.....++ .|..+.|+....|.. +.+ |..-+|..
T Consensus 876 na~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgim 952 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIM 952 (1034)
T ss_pred chheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCee
Confidence 34566777777778876 556788777 6677776666665555555554 366678888888888 888 97766665
Q ss_pred EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
..+.+.. ..+..-+ -.-|.-|+++...+.+.||.
T Consensus 953 h~q~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 953 HLQDKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eeccCCC--Ccchhhh--hccCceeEEeccCcEEEEEe
Confidence 5454431 1121111 12355677777767777774
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=1.1e-07 Score=57.16 Aligned_cols=39 Identities=33% Similarity=0.561 Sum_probs=36.0
Q ss_pred CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
++++.++.+ |...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788888 889999999999999999999999999997
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=1.3e-06 Score=77.58 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc----eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
.+..+..++++++||++. +....++++....+ .-...+......+..+.......+....++. ..+.+|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV-----YSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCc-----eeeeeec
Confidence 345566778899999988 67766776654332 1111222334445555555566666666665 8888888
Q ss_pred CCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE-eccCCCcceEEEccCCCceEEEEecCCC
Q 015198 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
...+.+...+.|-..++.++++||.++++ .|..|++-.....-.+..+ -+|...+..+++..+ ..|+ +|+.|
T Consensus 139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~---~~Ll-S~sGD 214 (390)
T KOG3914|consen 139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN---YLLL-SGSGD 214 (390)
T ss_pred ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC---ceee-ecCCC
Confidence 87788888888999999999999999988 6889999877655555555 346664554444433 2344 46789
Q ss_pred CeEEEEEcCC
Q 015198 197 GQVRIEHFGL 206 (411)
Q Consensus 197 g~i~i~~~~~ 206 (411)
++|++|++..
T Consensus 215 ~tlr~Wd~~s 224 (390)
T KOG3914|consen 215 KTLRLWDITS 224 (390)
T ss_pred CcEEEEeccc
Confidence 9999999764
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.60 E-value=0.00011 Score=64.29 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=108.0
Q ss_pred CCeEEEEECCCCcEEEEEeecC---ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 113 PTKVIIWDDHQSRCIGEFAFRS---DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 113 d~~i~vwd~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
++.|..||..+|+.+....... ...+..+..++.+++ .++.|+.||..+|+.+..+......... . ... ++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-~~~-~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-VVD-GGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E-EEE-TTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e-eec-ccc
Confidence 3999999999999999987532 222223434444444 7899999999999999888763322222 1 222 223
Q ss_pred EEEEecCCCCeEEEEE-cCCcceEEE-eccc---cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc
Q 015198 188 VLACPGLQRGQVRIEH-FGLNMIKLI-NAHD---SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA 262 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~-~~~~~~~~~-~~~~---~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~ 262 (411)
+++.+ .++.++.++ .+++.+... .... ...........+..++.+..++. |..+|+++|+.+..........
T Consensus 79 v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred ccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence 33332 566777766 667776663 3221 11112222234778888888999 9999999999988887632121
Q ss_pred --c------e-EEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 263 --E------I-YSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 263 --~------v-~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
. + ..+.+. ++ .++.++.++.+.-+|+.+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCE
Confidence 1 1 233333 44 777777788644449988873
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.6e-07 Score=56.48 Aligned_cols=38 Identities=32% Similarity=0.592 Sum_probs=35.9
Q ss_pred cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
+++..+.+|...|++++|+|++.+|++++.|+. |++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 467889999999999999999999999999999 99997
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=1.1e-06 Score=73.51 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=74.6
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQ 253 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (411)
+.++..+|..+.++++|+.||.+-+|+.+. .+...++.|+.+|+.+-|+| ++..|+++++||. +.-||..+ +.+.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~-~~l~ 259 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST-TFLS 259 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC-ceEE
Confidence 444455555556777799999999988765 44566789999999999998 5678999999999 99999653 2221
Q ss_pred E---------------------EeCC--CCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 254 E---------------------VRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 254 ~---------------------~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
. +..- .....|++ |.--|..|++|+.-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 0 0000 00112222 333577899999888888875
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=4.5e-05 Score=77.07 Aligned_cols=235 Identities=16% Similarity=0.116 Sum_probs=138.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
+.|.++.|..++..++++. .|.|.+-|.++....... .-..+|.++.|++|...++-.... +++.+.. .+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT-~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGR-----QTLLFMT-KD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCC-----cEEEEEe-cc
Confidence 6899999999999888888 999999888775543333 345668888888877655444332 5555544 44
Q ss_pred CcEEEEEe------ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEec--
Q 015198 124 SRCIGEFA------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPG-- 193 (411)
Q Consensus 124 ~~~~~~~~------~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-- 193 (411)
..++.... ..+..-.+-|-.....+- ..|.....+.... +....+..+. .-..++|-++|.++|+++
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~---~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD---HKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc---CCceEEEccCCcEEEEEEEe
Confidence 33333222 122333344443332222 2222222221110 1111111111 234567777787887632
Q ss_pred -CCC-CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEE---cCCCeEEEEEECCCCceEEEE--eCCCCCcceEE
Q 015198 194 -LQR-GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA---STRGTLIRIFNTVDGTRLQEV--RRGVDRAEIYS 266 (411)
Q Consensus 194 -~~d-g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~---s~dg~~I~vwd~~~~~~~~~~--~~~~~~~~v~~ 266 (411)
..+ ..|++|+..+..-..-....+.-.+++|-|.|.++++- ..|+. |.+|. ++|-.-..| ........|..
T Consensus 217 ~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchhe
Confidence 123 78999998854333223334445689999999998874 34556 99998 454332222 22224445999
Q ss_pred EEeCCCCCEEEE---EeCCCcEEEEEcccc
Q 015198 267 IALSPNVQWLAV---ASDKGTVHIFSLRVR 293 (411)
Q Consensus 267 l~~spdg~~l~s---~s~dg~I~vwd~~~~ 293 (411)
++|+.++..||+ ......|++|-+.+.
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCe
Confidence 999999999987 444445999988765
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=1.7e-05 Score=67.79 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec----C-CCCEEEEEEeccCC-------eEEEEecCCCCCCC
Q 015198 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----K-SGGFRIVEMLFRCN-------ILALVGAGDNSQYP 112 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-------~~~l~s~~~d~~~~ 112 (411)
+=..++|+||+.+||.+. .|+|++||+.. ..++...- . .-...+..+.|... ..+++-.-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------ 117 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------ 117 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec------
Confidence 457899999999999999 99999999875 33332211 0 11123333444321 12222211
Q ss_pred CCeEEEEECC-----CCcEEEEEe----ecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccC
Q 015198 113 PTKVIIWDDH-----QSRCIGEFA----FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH 183 (411)
Q Consensus 113 d~~i~vwd~~-----~~~~~~~~~----~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (411)
.|.++-|-+. ..+....+. +...|.++.++|..++++..|.-.- +++. -. ......+++..-
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~--a~~~GLtaWRiL 188 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SK--ASSCGLTAWRIL 188 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----cc--ccccCceEEEEc
Confidence 1566555532 234444444 4778999999999877761111000 0000 00 001122222221
Q ss_pred CCceEEE-EecCCCCeE------EEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 184 SSTSVLA-CPGLQRGQV------RIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 184 ~~~~~l~-~~g~~dg~i------~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
.+..+.. +....++.. .++.... +...........|..|.+||||++||+...+|. |.+|++.+-+....+
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence 1111111 111111111 1111111 000111224678999999999999999999999 999999988877766
Q ss_pred eC
Q 015198 256 RR 257 (411)
Q Consensus 256 ~~ 257 (411)
..
T Consensus 268 ~~ 269 (282)
T PF15492_consen 268 KQ 269 (282)
T ss_pred ch
Confidence 54
No 305
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.55 E-value=6.6e-05 Score=66.94 Aligned_cols=241 Identities=12% Similarity=0.050 Sum_probs=141.8
Q ss_pred EEEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-CEEE----EEEeccCCeEEEEecCCCCCC
Q 015198 48 ISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-GFRI----VEMLFRCNILALVGAGDNSQY 111 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~s~~~d~~~ 111 (411)
-.+..+||++.++++. ...|.+||..+........+... ...+ ..+..+.++.++.....-|
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-- 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-- 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS--
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC--
Confidence 4467899999888743 23489999999877777666432 1111 1133445554444332222
Q ss_pred CCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcC-CceeeEEEec----cCCCcceE-EEccCC
Q 015198 112 PPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIET----LANLRGLC-CLSHHS 184 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~-~~~~~~~~~~----~~~~~~~~-~~~~~~ 184 (411)
...|.|.|+..++.+.++...+...-.-..+++...+ .||.+.-..+. .|+....... ...++... .+. ..
T Consensus 117 -a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~-~~ 194 (342)
T PF06433_consen 117 -ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS-RD 194 (342)
T ss_dssp -SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE-TT
T ss_pred -CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE-CC
Confidence 2789999999999999888777665555566664444 89999988886 5555433211 11111111 111 12
Q ss_pred CceEEEEecCCCCeEEEEEcCCcceEEEec-------------cccceeEEEecCCCCEEEEEcC---CC------eEEE
Q 015198 185 STSVLACPGLQRGQVRIEHFGLNMIKLINA-------------HDSHIACFTLTLDGLLLATAST---RG------TLIR 242 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-------------~~~~i~~l~~sp~g~~l~s~s~---dg------~~I~ 242 (411)
.+.++.. +.+|.|+--+..+........ -.+.-.-+++++..+.|++.-. ++ +.|.
T Consensus 195 ~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 195 GGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 2334333 267888875555433222211 0123345778876655554321 11 2488
Q ss_pred EEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEE-eCCCcEEEEEccccccCC
Q 015198 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~I~vwd~~~~~~~~ 297 (411)
++|+.+++.+..+.. ..++.+|+.+.|.+ +|++. ..++.|.+||..+|+..+
T Consensus 273 v~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 899999999999884 34688999998776 56544 457899999999998653
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.52 E-value=1.2e-06 Score=83.44 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=153.2
Q ss_pred CeEEEEEcCC--CCEEEEEe-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEE
Q 015198 46 ELISVSWNQD--YGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 46 ~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd 120 (411)
.|-.+.|+|. ..+-++.. ...-.+|++.. ........+++|...++.+.|++.. .++++++-| ..+..||
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd 143 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD 143 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence 3566778765 33444444 66667898863 2334445567999999999999854 577888887 9999999
Q ss_pred CCCCc-EEEEEe-ecCceeEEEEcCC-eEEEE--EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 121 DHQSR-CIGEFA-FRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 121 ~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
+++-. .+.... -......++|+.. ...++ ..+.|++||++.| ..+..++++...+..+.+..--.+. +.+.+
T Consensus 144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~--~~s~~ 221 (1081)
T KOG0309|consen 144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE--IMSSS 221 (1081)
T ss_pred ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh--hcccC
Confidence 88753 444443 4556677888854 44555 5678999999765 5667777765433333332222222 33567
Q ss_pred CCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEE--EcCCCeEEEEE---------ECCC-CceEEEEeCCCC
Q 015198 195 QRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRIF---------NTVD-GTRLQEVRRGVD 260 (411)
Q Consensus 195 ~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vw---------d~~~-~~~~~~~~~~~~ 260 (411)
.||+|+.|++.... -........+|..-.+.|-|+-.++ .-.+.. +.++ +..+ .+.+++|.+ |
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H 298 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H 298 (1081)
T ss_pred CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence 89999999887532 2333345667777777776542222 111112 4443 3333 357888888 7
Q ss_pred CcceEEEEeCCCC----------CEEEEEeCCCcEEEEEcccc
Q 015198 261 RAEIYSIALSPNV----------QWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 261 ~~~v~~l~~spdg----------~~l~s~s~dg~I~vwd~~~~ 293 (411)
...|....|-..+ -.|++-+.|.++++|-+...
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 7777766664321 26999999999999988763
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=3.2e-06 Score=70.87 Aligned_cols=73 Identities=14% Similarity=0.298 Sum_probs=59.4
Q ss_pred cceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccc
Q 015198 217 SHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 217 ~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~ 292 (411)
..|.+++-+|..+ ++++|+.||. +-+||.+...... .+.. |+.+|+.+-|+| ++..|+++++||.+..||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3488898888654 6778888898 9999998875433 3344 888999999998 567899999999999999875
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=0.00016 Score=63.78 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=120.9
Q ss_pred EEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-C--ceeEEEEcCCeEEEE--------EcCeEEEEEc
Q 015198 92 EMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-S--DVRSVKLSRDRIVVV--------LEHKIYVYSF 159 (411)
Q Consensus 92 ~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~--~i~~~~~~~~~~~~~--------~dg~i~iwd~ 159 (411)
.+..+| ....++.+-.- -....+||..+++....+... + ---.-.|++||.++. ..|.|-|||.
T Consensus 9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 445555 34445544432 256789999999988877621 1 122457999999988 2588999999
Q ss_pred C-CceeeEEEeccCCCcceEEEccCCCceEEEEe-cC-----CCCe------------EEEEEcCCcceEE--E--eccc
Q 015198 160 V-DLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GL-----QRGQ------------VRIEHFGLNMIKL--I--NAHD 216 (411)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~-----~dg~------------i~i~~~~~~~~~~--~--~~~~ 216 (411)
. +.+.+.++..+.- ..-.+...+++..|+++ |+ ..|. ++++..+++.+.+ + .-|.
T Consensus 85 ~~~~~ri~E~~s~GI--GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI--GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCc--ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 8 5677777765543 33333344555444432 22 1122 2234444555544 3 3367
Q ss_pred cceeEEEecCCCCEEEEEcCCCe------EEEEEECCCCceEEEEeCC-----CCCcceEEEEeCCCCCEEEEEe-CCCc
Q 015198 217 SHIACFTLTLDGLLLATASTRGT------LIRIFNTVDGTRLQEVRRG-----VDRAEIYSIALSPNVQWLAVAS-DKGT 284 (411)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~------~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s-~dg~ 284 (411)
-.|.-+++.++|..++..-..|. .|-+++ .++.+..+... ...+.+-+|++++++.++++.+ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 78999999999986665544432 244443 23333333321 1235789999999999886555 4567
Q ss_pred EEEEEccccccC
Q 015198 285 VHIFSLRVRVVG 296 (411)
Q Consensus 285 I~vwd~~~~~~~ 296 (411)
+.+||..++...
T Consensus 241 ~~~~d~~tg~~~ 252 (305)
T PF07433_consen 241 VAVWDAATGRLL 252 (305)
T ss_pred EEEEECCCCCEe
Confidence 999999999854
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.0005 Score=58.19 Aligned_cols=109 Identities=8% Similarity=-0.036 Sum_probs=74.1
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS 134 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~ 134 (411)
..+++.|+ .+.+.--|..++...++..+ +.......+. -.|. ++-|... +.+++.+.++|..+..+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdf--VV~GCy~-----g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDF--VVLGCYS-----GGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCE--EEEEEcc-----CcEEEEEecchhheeeeeehh
Confidence 45677788 88888888888777777655 4444444444 2222 3444443 999999999999888888555
Q ss_pred ceeEE-EEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC
Q 015198 135 DVRSV-KLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN 173 (411)
Q Consensus 135 ~i~~~-~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 173 (411)
.|.+- ...+++.++. .|++.+..|.++..++...+....
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~ 136 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG 136 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence 55432 3455555554 799999999988888877655443
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.3e-06 Score=76.07 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=84.6
Q ss_pred ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-----c
Q 015198 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-----T 250 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-----~ 250 (411)
+.++++.+-.+.. +++| .+-.|.+-+.....-+.+. ..+.|.++.|...+.++..|..+|. |..+|++.+ .
T Consensus 215 ~~CawSlni~gyh-fs~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 215 WSCAWSLNIMGYH-FSVG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhhccceee-eccc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCc
Confidence 3345554444444 3345 4555666555554445554 6778899999998999999999999 999999864 4
Q ss_pred eEEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccC
Q 015198 251 RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 251 ~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+...+. |...|+++..-. ++++|++.+.+|+|++||++--++.
T Consensus 291 ~a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 291 CAQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred ceEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 455555 788899988776 7889999999999999999988764
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.39 E-value=0.0012 Score=64.09 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=130.2
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCC---EEEE-EEeccCCeEEEEecCCCCC---CCCCeEEEEECCCCcEEE
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---FRIV-EMLFRCNILALVGAGDNSQ---YPPTKVIIWDDHQSRCIG 128 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~s~~~d~~---~~d~~i~vwd~~~~~~~~ 128 (411)
..+++++ ++.|.-+|.++++.+.+..+.... ..+. ..... ++.+++....... -.++.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 5666677 999999999998888777653221 0011 11111 2344443321100 013889999999999988
Q ss_pred EEeec-Cc--------------------e-eEEEEcC-CeEEEE--EcC------------------eEEEEEcCCceee
Q 015198 129 EFAFR-SD--------------------V-RSVKLSR-DRIVVV--LEH------------------KIYVYSFVDLKLL 165 (411)
Q Consensus 129 ~~~~~-~~--------------------i-~~~~~~~-~~~~~~--~dg------------------~i~iwd~~~~~~~ 165 (411)
.+... .. + ....+.+ .+.+++ .++ .|+-+|.++|+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 87632 10 1 1233443 344444 333 7999999999998
Q ss_pred EEEeccCCCcc---------eEEEc-cCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEE
Q 015198 166 HQIETLANLRG---------LCCLS-HHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATA 234 (411)
Q Consensus 166 ~~~~~~~~~~~---------~~~~~-~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~ 234 (411)
..++....... +.... .+.....+++.++.+|.+.. +..+++.+-..... ...++.+| + .++.+
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~ 344 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLG 344 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEc
Confidence 88754322111 01111 12222224445667888877 55566665544321 11233344 2 23222
Q ss_pred ------------------cCCCeEEEEEECCCCceEEEEeCCCCC------cce--EEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 235 ------------------STRGTLIRIFNTVDGTRLQEVRRGVDR------AEI--YSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 235 ------------------s~dg~~I~vwd~~~~~~~~~~~~~~~~------~~v--~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
..+|. +.-.|+.+|+.+.+.....+. .+. ..+. ..+..|++++.||.|+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAF 421 (488)
T ss_pred cccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEE
Confidence 24577 889999999988777643111 111 1122 245778889999999999
Q ss_pred EccccccC
Q 015198 289 SLRVRVVG 296 (411)
Q Consensus 289 d~~~~~~~ 296 (411)
|.++|+..
T Consensus 422 d~~tG~~l 429 (488)
T cd00216 422 DATTGKEL 429 (488)
T ss_pred ECCCCcee
Confidence 99999854
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=0.00013 Score=69.07 Aligned_cols=224 Identities=13% Similarity=0.158 Sum_probs=121.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW 119 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw 119 (411)
.....-....++++|+|++++++++|...||......... ......+.|.+++.+.+-.. . +.|.++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~ 94 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVLES-S-----STIKIY 94 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE-T-T-----S-EEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCccEEEEEC-C-----CeEEEE
Confidence 3445556789999999999999889999999844322211 22344566776665554433 3 788886
Q ss_pred ECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
.--+.+....++....+..+-. |.+++ .++.|.+||..+++.++.+... .+..+.|++++.+++..+ +.
T Consensus 95 kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t--~~ 165 (443)
T PF04053_consen 95 KNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT--KD 165 (443)
T ss_dssp ETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-
T ss_pred EcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe--CC
Confidence 4233333234443333444433 55555 6677999999999999998643 235566677777888764 45
Q ss_pred eEEEEEcCCc------------ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198 198 QVRIEHFGLN------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY 265 (411)
Q Consensus 198 ~i~i~~~~~~------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~ 265 (411)
.+.|...+.. ....+..-...|.+.+|..+ .++..+.. . |+.+ ..|+.- .+.. -..++.
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~y 236 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLY 236 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--E
T ss_pred eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceE
Confidence 6777555555 45555444678889999766 44444434 5 7763 345432 2222 233567
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 266 SIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
=+.+.+..+.|.....|+.|..+.++...
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 77788877888889999999999887643
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=5.3e-05 Score=71.20 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=70.1
Q ss_pred ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
.....+.+.+++|+...|+.|..||. |.+||...+..... + ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999 99999866643322 2 3346789999999999999999999999999988
Q ss_pred ccCCCCCCC
Q 015198 294 VVGEDSSSS 302 (411)
Q Consensus 294 ~~~~~~~~~ 302 (411)
.....+..+
T Consensus 332 pi~~qLlsE 340 (545)
T PF11768_consen 332 PIKMQLLSE 340 (545)
T ss_pred ccceeeccc
Confidence 776655555
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=2e-06 Score=74.85 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=108.2
Q ss_pred CCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-----cEEEEE
Q 015198 56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEF 130 (411)
Q Consensus 56 g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-----~~~~~~ 130 (411)
|-.+++|.+..|-+-|++++-.. .| .....+.+..|...+.++..|... |.|.++|++.+ .+...+
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---sf-~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---SF-QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred eeeecccccceeEEEEeeccccc---cc-ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccCCCcceEEE
Confidence 44566777888999999874432 23 356667788888877777777776 99999998764 567777
Q ss_pred eecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCcee---eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198 131 AFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH 203 (411)
Q Consensus 131 ~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~ 203 (411)
-|...|+++..-. +++.+. .+|+|++||++--++ +.++.+|.+.....-+..++....+++ +++|...+||.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-ccCeeEEEEEe
Confidence 8999999998765 455444 799999999977666 899999988777777777777777766 55899999998
Q ss_pred cCCc
Q 015198 204 FGLN 207 (411)
Q Consensus 204 ~~~~ 207 (411)
.+..
T Consensus 375 l~~g 378 (425)
T KOG2695|consen 375 LDSG 378 (425)
T ss_pred cccC
Confidence 8743
No 315
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.32 E-value=0.00091 Score=61.36 Aligned_cols=175 Identities=11% Similarity=0.128 Sum_probs=106.2
Q ss_pred CeEEEEECCCCcEEEEEe--ecCceeEEE---EcCC----eEEEE------------Ec-CeEEEEEcCCc----eeeEE
Q 015198 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVK---LSRD----RIVVV------------LE-HKIYVYSFVDL----KLLHQ 167 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~---~~~~----~~~~~------------~d-g~i~iwd~~~~----~~~~~ 167 (411)
..|++.|..+.+.+..+. ....+.+++ +..+ ..+++ .. |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578999988888887776 344455444 4432 34444 12 88999999873 22222
Q ss_pred EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
+........+.++..-. +.++++. ++.|.++...... +.....+..++........+++++.|+.... +.++..
T Consensus 82 i~~~~~~g~V~ai~~~~-~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-GRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEET-TEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEE
T ss_pred EEEEeecCcceEhhhhC-CEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEEEE
Confidence 22221122455555553 3455443 4789997766655 5555445444445555555779999998888 887754
Q ss_pred CC-CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 247 VD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 247 ~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
+. ...+..+........++++.|-++++.++.+..+|.|.++.....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 43 333444443324557889999867779999999999999998643
No 316
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.28 E-value=0.00071 Score=63.96 Aligned_cols=224 Identities=17% Similarity=0.122 Sum_probs=120.5
Q ss_pred EEEEcCCCCEEEEEeCC------------cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 49 SVSWNQDYGCFAAGTSC------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 49 ~l~~s~~g~~la~g~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
.++.+|.|..+|...|. .|+||+... +.+....+.. ..++.+.|..+..+++...+ |.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~d------G~v 103 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEELVVVQSD------GTV 103 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeEEEEEcC------CEE
Confidence 45667777777776644 588888764 4444454433 68889999887665555433 999
Q ss_pred EEEECCCCcEEEEEe--------ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCc
Q 015198 117 IIWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSST 186 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 186 (411)
+++|+. |+....+. ....+....+..+|..+. .++.+++..-.... ..+.+... +.......+.+..
T Consensus 104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~--p~~~~~~~~~~~~ 180 (410)
T PF04841_consen 104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEI--PGLWTKFHWWPSW 180 (410)
T ss_pred EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccC--CCccccccccccc
Confidence 999975 43311111 112233334555776666 56666555432211 11111100 0000101111000
Q ss_pred eEEEEecCCCCeEEEEEcCCcceEEEec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198 187 SVLACPGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~ 259 (411)
..+. .-..++.+.+....+..+..+.. ..+++..|++||+|++||.-..+|. +.+....-.+.+.++...
T Consensus 181 ~~i~-~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~- 257 (410)
T PF04841_consen 181 TVIP-LLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTD- 257 (410)
T ss_pred ccce-EeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecC-
Confidence 0000 00112223332222222222222 2468999999999999999999999 999987666677677653
Q ss_pred CCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
.......+.|.-+...++.- ...|.+..
T Consensus 258 ~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 258 SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 23466788888765444333 33466654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.26 E-value=0.00043 Score=70.29 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=105.9
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCc
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL 162 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~ 162 (411)
.+...++++.|..+...++.+... |.|.+-|..+......-.....|.+++|+||+.+++ ......++...+.
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 445678888887765544444444 888888877766554444788999999999999988 3323334433443
Q ss_pred eeeEEEeccCCC---cceEEEccCCCceEEEEecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEE---
Q 015198 163 KLLHQIETLANL---RGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATA--- 234 (411)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--- 234 (411)
.++.....+... ...+..-|-.....+ .|+ .|....... ..+.......+. .=+.|.|--||+++|+.
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEe
Confidence 333222211100 011112221111111 121 111111000 000011111222 23468899999999883
Q ss_pred --cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEcccc
Q 015198 235 --STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVR 293 (411)
Q Consensus 235 --s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~ 293 (411)
..... |+|||.+ |.+-..-.. ....-.+++|-|.|.++++.. .|+.|.+|.-+.-
T Consensus 217 ~~~~~Rk-irV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 217 SETGTRK-IRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ccCCcee-EEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 22256 9999965 544322222 233456799999999998754 4557888875543
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00061 Score=66.78 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=122.3
Q ss_pred EEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEECCCC----
Q 015198 51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQS---- 124 (411)
Q Consensus 51 ~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd~~~~---- 124 (411)
+|++.+..++.|+ +|.|.+++-. - .....++.....++...+.-+. .++++-+.|...+...|++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4578889999999 9998887643 1 2222343444446666666554 5666655552222238999997542
Q ss_pred --cEEEE---Ee-----ecCceeEEEEcCCeEEEE---EcCeEEEEEcC----CceeeEEEeccCCCcceEEEccCCCce
Q 015198 125 --RCIGE---FA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV----DLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 125 --~~~~~---~~-----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
+++.+ +. ...++.+++++.+-+.++ .+|.|..+.-+ .+...........+++.+.+..++...
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 33422 22 245788889988877766 78999988531 122122222234455666666655543
Q ss_pred EEEEecCCCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 188 VLACPGLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
.++++ ...|.++...++. ...+..|...+.|..+++....+++++.. . +.+||....+.-..+.
T Consensus 187 lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~-l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F-LYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e-EEEEcCCCcceeeeec
Confidence 34443 4577887777766 55577888899999998766645555544 3 9999986555555665
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=1.4e-05 Score=78.27 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=97.6
Q ss_pred cCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccce
Q 015198 142 SRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHI 219 (411)
Q Consensus 142 ~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i 219 (411)
.|+..+.. ....+..+|+++.+..+........ +.-+..+. +++ ++|...|+|.+ +....+.+..+.+|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nn--r~l-f~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNN--RNL-FCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecC--cEE-EeecccceEEeecCCcCceeeeeeccccce
Confidence 44444444 5667888899888877766555443 33344332 444 45889999999 666678899999999999
Q ss_pred eEEEecCCCCEEEEEcC---------CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEE
Q 015198 220 ACFTLTLDGLLLATAST---------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFS 289 (411)
Q Consensus 220 ~~l~~sp~g~~l~s~s~---------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd 289 (411)
..+. -.|++|++++. |.- |+|||++.-+.+..+.- +. ...-+.|.|. ...+++++..|...+-|
T Consensus 221 SDfD--v~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~--~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 221 SDFD--VQGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQF--PY-GPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred eeee--ccCCeEEEeecccccccccccch-hhhhhhhhhhccCCccc--cc-CchhhhhcccccceEEEEecccceeecc
Confidence 7654 57889998875 445 89999998876655553 22 2245677774 34688889999999988
Q ss_pred ccc
Q 015198 290 LRV 292 (411)
Q Consensus 290 ~~~ 292 (411)
..+
T Consensus 295 ~~~ 297 (1118)
T KOG1275|consen 295 TAT 297 (1118)
T ss_pred ccc
Confidence 443
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.22 E-value=0.0028 Score=58.17 Aligned_cols=218 Identities=15% Similarity=0.220 Sum_probs=121.9
Q ss_pred CcEEEEecCCCcceEEeecCCCCEEEEE---EeccC-----CeEEEEecCC----CCCCCCCeEEEEECCCC-----c--
Q 015198 65 CGFRIYNCEPFKETFRRDLKSGGFRIVE---MLFRC-----NILALVGAGD----NSQYPPTKVIIWDDHQS-----R-- 125 (411)
Q Consensus 65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~l~s~~~----d~~~~d~~i~vwd~~~~-----~-- 125 (411)
..|+|.|..+...+....|.. ...+.+ +.+.. ...++++.+. ++....|.|.++++... +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 357888887776666666632 333332 33332 2333333321 11112289999998874 2
Q ss_pred EEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--E
Q 015198 126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--E 202 (411)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~ 202 (411)
.+.....+++|++++--.+..+++.++.|++|++...+ ....- ....+..+.++....+ ++++ |.....+.+ |
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~-~~~~~~~i~sl~~~~~--~I~v-gD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKA-FYDSPFYITSLSVFKN--YILV-GDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEE-EE-BSSSEEEEEEETT--EEEE-EESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhh-eecceEEEEEEecccc--EEEE-EEcccCEEEEEE
Confidence 22333478999999987555333389999999998777 43332 2333346666666554 4554 444555555 6
Q ss_pred EcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCC-------Cc-eEEEEeCCCCCcceEEE---Ee
Q 015198 203 HFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-------GT-RLQEVRRGVDRAEIYSI---AL 269 (411)
Q Consensus 203 ~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-------~~-~~~~~~~~~~~~~v~~l---~~ 269 (411)
+.....+..+.. ....++++.|-++++.++.+..+|. +.++.... +. .+......+....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 665554444432 3556888888866678999999999 99997652 22 22222111133467777 65
Q ss_pred CCC--CC------EEEEEeCCCcEEEE
Q 015198 270 SPN--VQ------WLAVASDKGTVHIF 288 (411)
Q Consensus 270 spd--g~------~l~s~s~dg~I~vw 288 (411)
.|. +. .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 552 22 47888899998843
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.00045 Score=66.70 Aligned_cols=166 Identities=7% Similarity=0.009 Sum_probs=104.4
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEcc------CCCce
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH------HSSTS 187 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 187 (411)
+.+.+.|.++.+...++........+.+++++.++.... |+.+.+..+..+...... ....+.+ ..+++
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTs----yNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTC----YNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGK 289 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEec----cCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCC
Confidence 678888888888888888777778889999988887110 122222222222211111 2222222 22444
Q ss_pred EEEEecCCCCeEEEEEcCC------cceEEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCce---------
Q 015198 188 VLACPGLQRGQVRIEHFGL------NMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR--------- 251 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~--------- 251 (411)
+..+ + ++.|.+.+... ..+..+. -......+.++|||+++++++. +.. |.|.|+.+.+.
T Consensus 290 ~~~V-~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 290 FKTI-G--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred EEEE-C--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence 4443 2 45677744433 2333333 3445578999999998887765 566 99999987553
Q ss_pred ---EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 252 ---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 252 ---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
..+... .......+|.++|....+---|..|..|++.+
T Consensus 365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 12345678999999888888999999999987
No 322
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.0026 Score=57.32 Aligned_cols=181 Identities=12% Similarity=0.021 Sum_probs=102.7
Q ss_pred CeEEEEECCCCcEEEEEeecCceeE-EEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccC---CCcceEEEccCCCceEE
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRS-VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l 189 (411)
+.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++.....+.... .....-....++++.+.
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w 125 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW 125 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence 7888888766543 34444444444 4566777777788888888886665533332111 11111223334455554
Q ss_pred EEecC----------CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC--C---ceEEE
Q 015198 190 ACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--G---TRLQE 254 (411)
Q Consensus 190 ~~~g~----------~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~---~~~~~ 254 (411)
+.+-. .-|.|+..+..+..++.+..+-..-+.|+||||++.|+.+......|.-|++.. + .....
T Consensus 126 fgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 126 FGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred EeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 43322 113233333334555555565666688999999988877766533388887752 2 11111
Q ss_pred EeCCCCCcceEEEEeCCCCCEEEEEeCCC-cEEEEEccccccC
Q 015198 255 VRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRVVG 296 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~ 296 (411)
+......+..-.++...+|.+.+++..+| .|.+|+.+ ++..
T Consensus 206 ~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 206 VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 22211445566777788888775554444 78888888 5543
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=9.4e-05 Score=72.04 Aligned_cols=220 Identities=9% Similarity=0.089 Sum_probs=130.1
Q ss_pred EEEEEcCCCCEEEEEe-----CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 48 ISVSWNQDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
+-.+|+|...+||+++ .|.|.||- ++++.... . ..+..+.+++|+|...+++.+-.- |.+.+|...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~--V-t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~ 89 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD--V-TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN 89 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc--c-ccceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence 4567999999999886 57788884 33332111 2 345667779999999999988877 999999966
Q ss_pred CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe--cc--CCCcceEEEccCCCce------E
Q 015198 123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE--TL--ANLRGLCCLSHHSSTS------V 188 (411)
Q Consensus 123 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~------~ 188 (411)
+.+...... |+.+|..+.|+++|..+. .-|.|.+|....-..++... .| ......+++...+++. .
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 655444333 999999999999999888 45889999875322222111 11 1223445555444422 1
Q ss_pred EEEecCCCCeEE-EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 189 LACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 189 l~~~g~~dg~i~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
.+++|. +.-+- ..++..+....-..|. =.|+|..+..++.+|. |+-.| ..|+.....+.. +. ..+
T Consensus 170 aaVtgD-e~alD~~fnwk~~~a~rs~~ks-------gv~~g~~F~~~~~~Gt-Vyyvd-q~g~~~~V~k~d---S~-vQm 235 (1416)
T KOG3617|consen 170 AAVTGD-ESALDEPFNWKESLAERSDEKS-------GVPKGTEFLFAGKSGT-VYYVD-QNGRQRTVHKLD---SE-VQM 235 (1416)
T ss_pred hhccCc-hhhhcccccCccchhhcccccc-------CCCCCcEEEEEcCCce-EEEEc-CCCcEEEEEEcc---ch-HHH
Confidence 233443 32222 2222211110001111 1478888899999999 87776 466665555542 12 234
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEc
Q 015198 268 ALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 268 ~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
-|.+...-|+....+-++.++=+
T Consensus 236 Lf~~~~eai~~i~e~lr~~l~~v 258 (1416)
T KOG3617|consen 236 LFMGYCEAISIIIEFLRDCLIFV 258 (1416)
T ss_pred HHhcccceEEEEeeeceeeEEEe
Confidence 45565455555555555444433
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00011 Score=71.25 Aligned_cols=187 Identities=17% Similarity=0.220 Sum_probs=126.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
+.++|++++ +++|+.|+ +|.|++++..... ...+ .+... ..+|.++++|+.| |+|.|-.+.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~-~~s~~------~~~Gey~asCS~D-----Gkv~I~sl~~ 102 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNF-DHSSS------ILEGEYVASCSDD-----GKVVIGSLFT 102 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc---cccc-ccccc------ccCCceEEEecCC-----CcEEEeeccC
Confidence 445666665 56899999 9999999876422 2212 22221 5678999999998 9999999999
Q ss_pred CcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE-
Q 015198 124 SRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE- 202 (411)
Q Consensus 124 ~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~- 202 (411)
.+....+.+..++.+++++|+-. . + + . +.++ +|+..| +.+.
T Consensus 103 ~~~~~~~df~rpiksial~Pd~~--------------~-~-------~-------------s-k~fv-~GG~ag-lvL~e 144 (846)
T KOG2066|consen 103 DDEITQYDFKRPIKSIALHPDFS--------------R-Q-------Q-------------S-KQFV-SGGMAG-LVLSE 144 (846)
T ss_pred CccceeEecCCcceeEEeccchh--------------h-h-------h-------------h-hhee-ecCcce-EEEeh
Confidence 99888888888999998888610 0 0 0 0 1122 244455 4442
Q ss_pred ---EcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC----CcceEEEEeCCCCCE
Q 015198 203 ---HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD----RAEIYSIALSPNVQW 275 (411)
Q Consensus 203 ---~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~ 275 (411)
.-+...+ .+....++|.++.| .|+++|-++.+| |+|||+.+++.+..+..... ......+.|.++. .
T Consensus 145 r~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~ 218 (846)
T KOG2066|consen 145 RNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R 218 (846)
T ss_pred hhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e
Confidence 2222222 34566889999999 678999999888 89999999888877665311 1123467887664 4
Q ss_pred EEEEeCCCcEEEEEcccc
Q 015198 276 LAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~ 293 (411)
|+.|-.| +|+|..++.+
T Consensus 219 LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEecCC-eEEEEEEecc
Confidence 5566555 5999999944
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.17 E-value=6.2e-05 Score=73.82 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=120.3
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS 134 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~ 134 (411)
..++.|+ ...+..+|+.+.+......+.... +.-|. .++..+..|... |+|.+-|.++.+.++++. |.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR--~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMR--YNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCc--eEEEE--ecCcEEEeeccc-----ceEEeecCCcCceeeeeecccc
Confidence 3455555 666677777765554444432222 33332 345566666666 999999999999999998 999
Q ss_pred ceeEEEEcCCeEEEE----------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE-
Q 015198 135 DVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH- 203 (411)
Q Consensus 135 ~i~~~~~~~~~~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~- 203 (411)
.|.++....+-.+.+ .|.-|++||++..+.+..+..+..+ ..+.|.|.-.....++ +..|...+-+
T Consensus 219 siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 219 SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVDT 295 (1118)
T ss_pred ceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeeccc
Confidence 998888766544443 5888999999988877766655544 4556666554444333 3567777733
Q ss_pred --cCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 204 --FGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 204 --~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
.... .+..+......+..++++++|+.|+.|..+|. |.+|-
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 2222 23333444566999999999999999999999 99996
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=7.2e-05 Score=70.47 Aligned_cols=189 Identities=13% Similarity=0.066 Sum_probs=121.1
Q ss_pred CEEEEEEeccCCeEEEEecCCCCCCCC-CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcC--eEEEEEc
Q 015198 87 GFRIVEMLFRCNILALVGAGDNSQYPP-TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEH--KIYVYSF 159 (411)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d-~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg--~i~iwd~ 159 (411)
...+....|++++..++--... ... ..+.++++.+++........+.-...+|+|||+.++ .|+ .|+++|+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 3344445566665443322111 011 369999999998888777777778889999999888 344 5788888
Q ss_pred CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198 160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237 (411)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (411)
..++.. .+..... ....-+++|+|..|+++.+..|.-.| .+..+.....+......-..-.++|||++|+..+..
T Consensus 270 ~~~~~~-~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 270 DGKNLP-RLTNGFG--INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCcce-ecccCCc--cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 776633 3433222 22366677888899988888887666 445556556665554444477899999998876643
Q ss_pred -C-eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198 238 -G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283 (411)
Q Consensus 238 -g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (411)
| ..|.+.|+.++..++.+.. ......-.|.++|+.+...+..+
T Consensus 347 ~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 347 GGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence 2 1277778777765444442 22344567888888777655443
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.2e-05 Score=70.87 Aligned_cols=198 Identities=12% Similarity=0.116 Sum_probs=137.5
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCcEEEE---Ee-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe
Q 015198 98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGE---FA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE 169 (411)
Q Consensus 98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~ 169 (411)
-..++.+++.| |.++.|.-..-.-+.- +. |...|.+++.+-++.+.+ .|..++++|+.+-..+..++
T Consensus 19 ka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK 93 (558)
T KOG0882|consen 19 KAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK 93 (558)
T ss_pred hhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc
Confidence 34566677777 9999998433122222 22 778899999999998888 38999999998776665555
Q ss_pred ccCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 170 TLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
...-|-.+..+...+ .-..|+++...++.+.+.+..+. ....-.-|..+|.++.+++-+..+++....|. |.-|.
T Consensus 94 L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs 172 (558)
T KOG0882|consen 94 LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWS 172 (558)
T ss_pred cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeec
Confidence 443333333222222 22356666667888888665542 23333568999999999999999999998998 99998
Q ss_pred CCC------CceEEEEeC-------CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 015198 246 TVD------GTRLQEVRR-------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS 301 (411)
Q Consensus 246 ~~~------~~~~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~ 301 (411)
... .+....++. ........++.|+|+|..+.+-+.|..|+++++.+|+..+++..
T Consensus 173 ~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 173 AEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred CCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 652 111111110 01334678999999999999999999999999999987765443
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00028 Score=66.56 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=113.0
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----E-c-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----L-E-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (411)
..+.+-|.. +.....+. ....+..-+|+|++..++ . . ..++++|+.+++......... ......++|+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspD 248 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPD 248 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCC
Confidence 566777754 65555555 456777788999988776 2 2 469999998887666554222 2345566777
Q ss_pred ceEEEEecCCCCeEEEE--EcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC-e-EEEEEECCCCceEEEEeCCCCC
Q 015198 186 TSVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDR 261 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~ 261 (411)
++.|+++...||...|| +..++....+....+.-..-.|+|||+.|+-.+..+ . .|.++|.+.+.. ..+.. ..
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~ 325 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG 325 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence 78888888888887774 444555555554444445778999999887665443 2 266677765554 33332 11
Q ss_pred cceEEEEeCCCCCEEEEEeCC-Cc--EEEEEccccc
Q 015198 262 AEIYSIALSPNVQWLAVASDK-GT--VHIFSLRVRV 294 (411)
Q Consensus 262 ~~v~~l~~spdg~~l~s~s~d-g~--I~vwd~~~~~ 294 (411)
..-..-.|+|||++|+..+.. |. |.+.++.++.
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 112267899999999877643 44 6666665555
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0033 Score=61.15 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE----EEEE--EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF----RIVE--MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~ 128 (411)
+..+.++. ++.+.-.|..+++.+.......... .+.. +....++.+++.. .+ +.|.-+|.++|+.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~-----g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FD-----GRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CC-----CeEEEEECCCCCEee
Confidence 33455566 8999999998888777765422200 0000 1111114444443 33 999999999999998
Q ss_pred EEeecCc------e-eEEEEcCCeEEEE-E----------cCeEEEEEcCCceeeEEEeccCCCc-ce------------
Q 015198 129 EFAFRSD------V-RSVKLSRDRIVVV-L----------EHKIYVYSFVDLKLLHQIETLANLR-GL------------ 177 (411)
Q Consensus 129 ~~~~~~~------i-~~~~~~~~~~~~~-~----------dg~i~iwd~~~~~~~~~~~~~~~~~-~~------------ 177 (411)
.+..... + ....+.. +.+++ . ++.++.+|..+|+.+..+....... ..
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 8874332 1 1222332 34443 1 5789999999999988776532110 00
Q ss_pred ------EEEccCCCceEEEEecCCCC------------------eEEE-EEcCCcceEEEeccccce------eEEEec-
Q 015198 178 ------CCLSHHSSTSVLACPGLQRG------------------QVRI-EHFGLNMIKLINAHDSHI------ACFTLT- 225 (411)
Q Consensus 178 ------~~~~~~~~~~~l~~~g~~dg------------------~i~i-~~~~~~~~~~~~~~~~~i------~~l~~s- 225 (411)
.....++.+..+++ +..++ .|.- +..+++.+-..+.-.... ....+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 01122222223333 33333 3443 445555555543211100 000111
Q ss_pred ---CCCC---EEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 226 ---LDGL---LLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 226 ---p~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
-+|. .++.++.+|. +...|.++|+.+....
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~ 328 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP 328 (488)
T ss_pred ccccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence 1343 6778889999 9999999999987765
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=1.9e-06 Score=83.71 Aligned_cols=214 Identities=10% Similarity=0.066 Sum_probs=136.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~ 117 (411)
....|....+|++|+.+.+.|++|+ .|.|++|++.++....... .|...+..+-.+.++....+.+.. +.-...
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc--ccccccccccccCCcceeeeeccc---cCchHH
Confidence 3567888999999999999999999 9999999999876655544 677777777777766544443321 124678
Q ss_pred EEECCC-CcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc----CCCcceEEEccCCCceEE
Q 015198 118 IWDDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL----ANLRGLCCLSHHSSTSVL 189 (411)
Q Consensus 118 vwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l 189 (411)
+|++.+ +...+.+.. -.++.|+.....-+ ......+||++++..+.++-.. ........| +|...++
T Consensus 1171 LW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F--sP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF--SPCDTLI 1245 (1516)
T ss_pred HhccccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc--CCCcceE
Confidence 999654 444444442 33566665433222 4567899999998877664221 111133344 4443444
Q ss_pred EEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198 190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~ 268 (411)
. .||. +|+.+. ..++.|......+ .-.|+|.|..++.-+ .|||+++.+.++.+..- .-..+.
T Consensus 1246 l----ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~Vt 1308 (1516)
T KOG1832|consen 1246 L----NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVT 1308 (1516)
T ss_pred e----eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEE
Confidence 3 3443 476654 3444444333222 234899999887633 48999999988776642 235678
Q ss_pred eCCCCCEEEEE
Q 015198 269 LSPNVQWLAVA 279 (411)
Q Consensus 269 ~spdg~~l~s~ 279 (411)
|+..|..++..
T Consensus 1309 FNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1309 FNSTGDVMYAM 1319 (1516)
T ss_pred eccCccchhhh
Confidence 98888866543
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00065 Score=66.58 Aligned_cols=187 Identities=15% Similarity=0.198 Sum_probs=110.4
Q ss_pred ccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCc-eeEEEEcCCeEEEE---E-cC----eEEEEEcCC---
Q 015198 95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD-VRSVKLSRDRIVVV---L-EH----KIYVYSFVD--- 161 (411)
Q Consensus 95 ~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~~---~-dg----~i~iwd~~~--- 161 (411)
+++++..++-|+.+ |.|.+.+ ..-+.++.++ +... |..+....+..+++ . ++ .+++|+++.
T Consensus 31 ~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 31 CSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 45555556666655 8888777 4445556666 4444 55555555545555 2 22 699999943
Q ss_pred ---ceee--EEEeccC---CCcceEEEccCCCceEEEEecCCCCeEEEEE---cCCcceEE--EeccccceeEEEecCCC
Q 015198 162 ---LKLL--HQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEH---FGLNMIKL--INAHDSHIACFTLTLDG 228 (411)
Q Consensus 162 ---~~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~---~~~~~~~~--~~~~~~~i~~l~~sp~g 228 (411)
.+++ +.+..+. ++.....++.+.+-..+|+ |..+|.|..+. .+.+-.+. ......+|+.+++..++
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 2333 1222221 2223334444444455554 88999998832 22122222 23346799999999999
Q ss_pred CE-EEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 229 LL-LATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 229 ~~-l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
+. ++++. ... |.+|.+. |+. ...+.. +...+.|..+++....+++++... +.+|+.+..+
T Consensus 184 ~s~lFv~T-t~~-V~~y~l~-gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~~ 246 (933)
T KOG2114|consen 184 KSVLFVAT-TEQ-VMLYSLS-GRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGRG 246 (933)
T ss_pred ceeEEEEe-cce-eEEEEec-CCCcceeeecc--CCccceeeecCCCCccEEEecCce-EEEEcCCCcc
Confidence 86 33333 345 9999986 444 333443 666889999987655466665554 9999987443
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00038 Score=62.32 Aligned_cols=240 Identities=12% Similarity=0.049 Sum_probs=129.7
Q ss_pred ccCCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCe
Q 015198 39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTK 115 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~ 115 (411)
....|...|..++|+|..+ ++..++ +..|+|.|+++........ ....+.+++|+-+ ..++..|... |.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~n-----G~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQN-----GM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccC-----ce
Confidence 5778999999999999987 677888 9999999999855544443 2356777777754 4556666665 99
Q ss_pred EEEEECCCCcE-EEEEe---ecCceeEEEEc-------CCeEEEEEcCeEEEEEcC--CceeeEEEeccCCCcceEEEcc
Q 015198 116 VIIWDDHQSRC-IGEFA---FRSDVRSVKLS-------RDRIVVVLEHKIYVYSFV--DLKLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 116 i~vwd~~~~~~-~~~~~---~~~~i~~~~~~-------~~~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 182 (411)
|.|||++..+- +..+. ...+|..++.- ..|.+++.--.+..|++. .+.....++.. .+..++.+..
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele-~pG~cismqy 338 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE-PPGICISMQY 338 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC-CCcceeeeee
Confidence 99999876432 22221 22334433322 223333333334445442 11111112111 1123344444
Q ss_pred CCCceEEEEecCCC------Ce--EEEEEcCCcceEEE-ecc-ccc------eeEEEecCCCCEEEE-EcCCCeEEEEEE
Q 015198 183 HSSTSVLACPGLQR------GQ--VRIEHFGLNMIKLI-NAH-DSH------IACFTLTLDGLLLAT-ASTRGTLIRIFN 245 (411)
Q Consensus 183 ~~~~~~l~~~g~~d------g~--i~i~~~~~~~~~~~-~~~-~~~------i~~l~~sp~g~~l~s-~s~dg~~I~vwd 245 (411)
++....++.+-..+ .. .+++..++..+-.. .++ .+. -..+.-.++.++|+. ++..+. +.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil~D 417 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LILQD 417 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEEec
Confidence 44333333322110 00 12223333222111 111 000 011112345565554 444556 99999
Q ss_pred CCCCceEEEEeCCCCCcceEEEEeCC-C-CCEEEEEeCCCcEEEEEccc
Q 015198 246 TVDGTRLQEVRRGVDRAEIYSIALSP-N-VQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~v~~l~~sp-d-g~~l~s~s~dg~I~vwd~~~ 292 (411)
..+++.++++.. ..+|.+++... + +.+|++-.+| .++||..+.
T Consensus 418 ~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~es 462 (463)
T KOG1645|consen 418 PHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNES 462 (463)
T ss_pred cchhheeeeccc---CcceeecceeecCCcchhhheecc-eEEEEecCC
Confidence 999999999884 46888877654 2 3467666555 599987654
No 333
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.03 E-value=6.1e-05 Score=64.98 Aligned_cols=157 Identities=11% Similarity=0.211 Sum_probs=97.4
Q ss_pred ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce-eeEE--EeccC-----CCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198 132 FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK-LLHQ--IETLA-----NLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 132 ~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~-~~~~--~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
|.-.|.++.++.|...+. .|=.|.+|++.-.. .... ++.+. ..++...|++.....++ + .+..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm-Y-SsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM-Y-SSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE-E-ecCCCcEEe
Confidence 778899999999887777 67789999985321 1111 12221 11233344443333333 3 347899999
Q ss_pred EEcCCc-----ceE------------EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCC----
Q 015198 202 EHFGLN-----MIK------------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGV---- 259 (411)
Q Consensus 202 ~~~~~~-----~~~------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~---- 259 (411)
-+.+.. ... -+.+-...|..+.|+++|+++++-+. -+ |+|||++.. .++.++..+.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt-vkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT-VKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce-EEEEecccccCCceeechHHHHHH
Confidence 444421 111 11223456888999999999987654 34 999999765 4566654310
Q ss_pred ------CCcce---EEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 260 ------DRAEI---YSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 260 ------~~~~v---~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
....| ..+.|+.|.+.+++|+..+..-+|-+.+
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 11222 3578999999999999888888876443
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.0014 Score=65.78 Aligned_cols=134 Identities=19% Similarity=0.341 Sum_probs=91.4
Q ss_pred cCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-------CceEEEEecCCCCeEEEEEcCCc--ceEEEe----cccc
Q 015198 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------STSVLACPGLQRGQVRIEHFGLN--MIKLIN----AHDS 217 (411)
Q Consensus 151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~----~~~~ 217 (411)
...|+-.|++.|+.+..+..+... .+..+.++. ...++ |-.+..+..|+.+.. .+..-. ....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCC
Confidence 578999999999999999887652 366777653 22233 334556666555432 222111 2345
Q ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
...|++-+.+| +||+|+.+|. ||+|| +.|+.-++.-.+ ...+|.+|..+.||+||++.+ +..|.+++..-.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd-~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~ 649 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGD-IRLYD-RLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTLIK 649 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCc-EEeec-ccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEeee
Confidence 67788887777 6899999999 99999 455443333322 456999999999999987665 456888887543
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.0018 Score=61.48 Aligned_cols=218 Identities=13% Similarity=0.098 Sum_probs=115.1
Q ss_pred CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce
Q 015198 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK 163 (411)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~ 163 (411)
.......+.++|++.+++.+++ |...|+.....+.. ..+.-..+.|.+.+.+.+ ..+.|.++.--+.+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3444667889999887777655 78888884333322 234455688888888887 46789997432333
Q ss_pred eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIR 242 (411)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~ 242 (411)
....+.... .+-.+-. |.+|+..+ ++.|.++++.. +.+..+... +|..+.|+++|++++..+.+. +.
T Consensus 101 ~~k~i~~~~---~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~ 168 (443)
T PF04053_consen 101 VVKSIKLPF---SVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IY 168 (443)
T ss_dssp TT-----SS----EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EE
T ss_pred cceEEcCCc---ccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EE
Confidence 333443322 1222222 55666653 45789988774 555555533 489999999999999998775 67
Q ss_pred EEECCCC-----------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccc
Q 015198 243 IFNTVDG-----------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTE 311 (411)
Q Consensus 243 vwd~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 311 (411)
|++.+.. .....+.. -...|.+.+|..| .++-.+.. .|+- +-.|+..
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~--------------- 226 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG--------------- 226 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE---------------
T ss_pred EEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc---------------
Confidence 7664332 02222221 1346888899766 34333333 5665 5555432
Q ss_pred cccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198 312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~ 389 (411)
.++.-+...+++.+.++ +++++.-.|+.+..|.++.
T Consensus 227 ------------------------------------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 ------------------------------------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ------------------------------------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ------------------------------------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 22222236677888775 8999999999999999985
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.021 Score=53.64 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEECC
Q 015198 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
....+.+.+++..+.+.. ...+...+.. .................+..++.+ ..++....+ +.|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCC-----CeEEEEcCc
Confidence 556778888886666555 3333333332 111111111111222333444443 355555544 899999988
Q ss_pred CCcEEEEEeecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
+.+.............+++++++..+. . ++.+.+.|..+.+.+........+ ..+.+++++..++.+-..+
T Consensus 105 ~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 105 TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEecCC
Confidence 888888887666788899999885554 2 588999998888888876554433 4555666666555555568
Q ss_pred CeEEEEEcCCcceEE------EeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEE-EeCCCCCcceEE
Q 015198 197 GQVRIEHFGLNMIKL------INAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQE-VRRGVDRAEIYS 266 (411)
Q Consensus 197 g~i~i~~~~~~~~~~------~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~ 266 (411)
+.|.+.+.....+.. ... ...-..+.++|+|.++...... +. +...|..++..... +... .. ....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~ 257 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRG 257 (381)
T ss_pred CeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCc
Confidence 888886655554442 222 2233568899999976665444 47 99999988877655 2221 22 4567
Q ss_pred EEeCCCCCEEEEEeCC-CcEEEEEccccccC
Q 015198 267 IALSPNVQWLAVASDK-GTVHIFSLRVRVVG 296 (411)
Q Consensus 267 l~~spdg~~l~s~s~d-g~I~vwd~~~~~~~ 296 (411)
+..+|+|..+.+.... +.+.+-|..+....
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 8999999998887544 78999888886644
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.88 E-value=0.0027 Score=61.48 Aligned_cols=187 Identities=9% Similarity=-0.037 Sum_probs=110.7
Q ss_pred EEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198 50 VSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (411)
Q Consensus 50 l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~ 127 (411)
+=+.|||+.+...+ .+.+.+.|.++.+....... .. ....+.+++++.++...+.+. -...++...+..+...+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dg--npd~v~~spdGk~afvTsyNs-E~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DG--NLDNVDTDYDGKYAFSTCYNS-EEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CC--CcccceECCCCCEEEEeccCc-ccCcceeeeccccCceE
Confidence 34567887765445 78888889887665555544 22 223344555665554443110 00134444443333322
Q ss_pred EEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCC-----ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198 128 GEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 128 ~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
..+.... +. .+.++|++.. .++.|.+.|..+ .+.+..+.....+ -.+..+|+++++++++..+.+|.|
T Consensus 274 vvfni~~-ie--a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 274 VVFNIAR-IE--EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred EEEchHH-HH--HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCCEEEEeCCCCCcEEE
Confidence 2222111 00 2344665555 567899999987 4566666655443 345556677888888888999999
Q ss_pred EEcCCcc-------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198 202 EHFGLNM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 202 ~~~~~~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
.+..... +.....-.++ ...+|.++|....+-.-|.. |..||+.+
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 5554311 2333333333 35789999998888888998 99999876
No 338
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.009 Score=51.58 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=129.4
Q ss_pred EEEEEcCCC-CEEEEEe-CCc-EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198 48 ISVSWNQDY-GCFAAGT-SCG-FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (411)
Q Consensus 48 ~~l~~s~~g-~~la~g~-dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~ 124 (411)
..++|+|.- .-++.+- -|+ ..++|.+..+......-.......-.-.|++++.+|.....|.+...|.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 445666653 3344555 343 4577777655544433222222233345899999888887776667799999997654
Q ss_pred -cEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEE-E-------------------cCCceeeEEEecc--CCCcceEE
Q 015198 125 -RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVY-S-------------------FVDLKLLHQIETL--ANLRGLCC 179 (411)
Q Consensus 125 -~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iw-d-------------------~~~~~~~~~~~~~--~~~~~~~~ 179 (411)
+.+.++. |.-.-..+.+.+||+.++ .+|.|... | ..+|+++.+.... .....+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 4455565 666677889999999888 67766655 2 2233333222111 11122233
Q ss_pred EccCCCceEEEEecCCCCeEEE-EEcC---------------CcceEEEec-------cccceeEEEecCCCCEEEEEcC
Q 015198 180 LSHHSSTSVLACPGLQRGQVRI-EHFG---------------LNMIKLINA-------HDSHIACFTLTLDGLLLATAST 236 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i-~~~~---------------~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~ 236 (411)
+...+ ||+|.. -.+. ++.+..+.. ....|-+|+.+.+..+++..+-
T Consensus 231 ld~g~-----------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 231 LDIGR-----------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred eeeCC-----------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence 33333 444443 1121 222332221 2345778888877777777777
Q ss_pred CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
.|+...+||..+|..+...... ....++- ...-+++.+.+|.|.++
T Consensus 300 ~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred CCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEec
Confidence 7665889999999987544321 2233333 33346677788888887
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.84 E-value=0.016 Score=51.86 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=118.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEe-------------ecCCCCEEEEEEe---ccCCeEEEEecCCC
Q 015198 45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR-------------DLKSGGFRIVEML---FRCNILALVGAGDN 108 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~l~s~~~d 108 (411)
..|..+...++-+.|++-+|+.+.+++++........ .+ .....+..+. .......++.+..
T Consensus 36 ~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~k- 113 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVK- 113 (275)
T ss_pred ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEEEC-
Confidence 3499999999988888888999999998754433311 11 1112222333 2233344444333
Q ss_pred CCCCCCeEEEEECCCC-----cEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCC---------
Q 015198 109 SQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANL--------- 174 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------- 174 (411)
..|.+|..... +..+++.....+.++.|.++...++......+.|+.++.....+......
T Consensus 114 -----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 114 -----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred -----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 68888875442 56677778899999999977777777888999999876654443222111
Q ss_pred cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (411)
.....+..-+++.+|++- .+-.+. -+..++..+ .+.- ......+++. ..+|+..+. +. |.||++.+++++
T Consensus 189 ~~~~~~~~~~~~e~Ll~~--~~~g~f-v~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~lv 260 (275)
T PF00780_consen 189 SKPLGIFQLSDNEFLLCY--DNIGVF-VNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGELV 260 (275)
T ss_pred CCceEEEEeCCceEEEEe--cceEEE-EcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcEE
Confidence 112222222334555542 232233 334444333 3332 2344556653 346666554 56 999999999999
Q ss_pred EEEeC
Q 015198 253 QEVRR 257 (411)
Q Consensus 253 ~~~~~ 257 (411)
+.+..
T Consensus 261 Q~i~~ 265 (275)
T PF00780_consen 261 QTIPL 265 (275)
T ss_pred EEEEC
Confidence 88885
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.023 Score=53.86 Aligned_cols=168 Identities=13% Similarity=0.194 Sum_probs=91.4
Q ss_pred eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEec--cCCCcc---eEEEccCCCc
Q 015198 115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET--LANLRG---LCCLSHHSST 186 (411)
Q Consensus 115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~ 186 (411)
.|.+|+ ..|+.+..+. ..+.|.++.|+.+..+++ .||.+++||+.. +....+.. ....+. +........|
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCC
Confidence 589999 6788888877 348999999999888777 899999999863 33111111 111111 1111222234
Q ss_pred eEEEEecCCCCeEEE-EEcCCc-ceEEE---ec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198 187 SVLACPGLQRGQVRI-EHFGLN-MIKLI---NA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE 254 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i-~~~~~~-~~~~~---~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~ 254 (411)
+++.+ .++.+.+ .+.... ..+.+ .. +........++.+....+....++. +.+.+-...+.
T Consensus 140 -ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 -IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred -EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 33333 3445555 333221 11111 11 0000000223334444444444444 54333222111
Q ss_pred EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
+. ..+++..++.||+|++||.-..+|.+.|...+-.+
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 11 23579999999999999999999999888765544
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0011 Score=59.40 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=77.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CC----------------cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEe
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SC----------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVG 104 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg----------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s 104 (411)
|...-.++.+++...++..+. -. .+++.+..+.+... -++.+...|..++|+|... ++..
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~ 211 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGL 211 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhh--cccccchhhhhhccCccccceeee
Confidence 556666777777655554433 11 13333333322211 2346677788889998655 4555
Q ss_pred cCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCc
Q 015198 105 AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL 162 (411)
Q Consensus 105 ~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~ 162 (411)
++.+ ..|+|.|+++..++..+.....+++++|.-|....+ .+|.|++||++..
T Consensus 212 asl~-----nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 212 ASLG-----NKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eccC-----ceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 5655 999999999999999998779999999998776555 6899999999754
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.79 E-value=0.025 Score=53.94 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=124.8
Q ss_pred CeEEEEEcCCCCEEEEEe--CCc----EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC------C
Q 015198 46 ELISVSWNQDYGCFAAGT--SCG----FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP------P 113 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~--dg~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~------d 113 (411)
.+...+++|||++||.+- .|. ++++|+++++. +...+. ......+.|.+++..++....+.... .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 344688999999999775 444 89999998543 332221 11122277777743333322221111 4
Q ss_pred CeEEEEECCCCcE--EEEEe--ecCc-eeEEEEcCCeEEEE------Ec-CeEEEEEcCCc----eeeEEEeccCCCcce
Q 015198 114 TKVIIWDDHQSRC--IGEFA--FRSD-VRSVKLSRDRIVVV------LE-HKIYVYSFVDL----KLLHQIETLANLRGL 177 (411)
Q Consensus 114 ~~i~vwd~~~~~~--~~~~~--~~~~-i~~~~~~~~~~~~~------~d-g~i~iwd~~~~----~~~~~~~~~~~~~~~ 177 (411)
..|+.|.+.+... ...+. .... ...+..++|+++++ .+ ..+++.|+..+ .....+........
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~- 280 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE- 280 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E-
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE-
Confidence 6799999877643 23444 2233 66888999998877 24 67899998764 23333333222111
Q ss_pred EEEccCCCceEEEEecC--CCCeEEEEEcCC-c---ceEEEecccc--ceeEEEecCCCCEEEE-EcCCCe-EEEEEECC
Q 015198 178 CCLSHHSSTSVLACPGL--QRGQVRIEHFGL-N---MIKLINAHDS--HIACFTLTLDGLLLAT-ASTRGT-LIRIFNTV 247 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~--~dg~i~i~~~~~-~---~~~~~~~~~~--~i~~l~~sp~g~~l~s-~s~dg~-~I~vwd~~ 247 (411)
..+...++ .+++.+.. ..+.|..-+... . ....+..+.. .+..+.. .+.+|+. ...++. .|+++++.
T Consensus 281 ~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 11212222 33333321 223333333322 2 1224455554 3444443 4444444 333332 38899987
Q ss_pred CCceEEEEeCCCCCcceEEEEeCCCCCEEEE--EeC--CCcEEEEEcccccc
Q 015198 248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAV--ASD--KGTVHIFSLRVRVV 295 (411)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~--dg~I~vwd~~~~~~ 295 (411)
.+.....+... ..+.|..+...+++..+.. .+. -++++.||+.+++.
T Consensus 358 ~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 358 DGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp -TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 45555566543 3445677776676664432 222 24788889988864
No 343
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.029 Score=50.59 Aligned_cols=214 Identities=14% Similarity=0.060 Sum_probs=122.9
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 49 SVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 49 ~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
...|.++...|+-.. .+.|.-|+..+.+... ... +..+.. ......+.++++. ..+.+++.+++.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~---p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~ 96 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS---PGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGG 96 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC---CCCcccceeecCCCeEEEEc--------cccEEEeccCCc
Confidence 345778888666655 8888888877543322 211 222222 3344455555442 566777776665
Q ss_pred EEEEEe------ecCceeEEEEcCCeEEEEEc--------------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198 126 CIGEFA------FRSDVRSVKLSRDRIVVVLE--------------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS 185 (411)
Q Consensus 126 ~~~~~~------~~~~i~~~~~~~~~~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (411)
.+..+. .....+.....|+|.+.+.+ |.|+.+|. .+..++.+..+-. ..-.++++|+
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpD 173 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPD 173 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCC
Confidence 533332 13556788889998888722 23444443 4444444443222 2223445555
Q ss_pred ceEEEEecCCCCeEEEEEcC---C----c-ceEEEeccccceeEEEecCCCCEEEEEcCCC-eEEEEEECCCCceEEEEe
Q 015198 186 TSVLACPGLQRGQVRIEHFG---L----N-MIKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i~~~~---~----~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~ 256 (411)
++.|.++-+..+.|.-+... + + ....+....+..-.++...+|.+-+++-..| . |.+|+.. |+++..+.
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEE
Confidence 55666655555666664443 1 1 1122223445566778888898776555554 6 9999976 99999888
Q ss_pred CCCCCcceEEEEeC-CCCCEEEEEeC
Q 015198 257 RGVDRAEIYSIALS-PNVQWLAVASD 281 (411)
Q Consensus 257 ~~~~~~~v~~l~~s-pdg~~l~s~s~ 281 (411)
. ....+++++|- ++.+.|.+.+.
T Consensus 252 l--P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 252 L--PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred C--CCCCCccceEeCCCcCEEEEEec
Confidence 6 33578888886 44555544443
No 344
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=2.1e-05 Score=76.75 Aligned_cols=189 Identities=10% Similarity=0.040 Sum_probs=129.7
Q ss_pred cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----EcCeEEE
Q 015198 83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV 156 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~dg~i~i 156 (411)
++.+.....++.|+.+...++.|... |.|+++++.+|....... |...|+.+.-+.+|.... ..--..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45677788899999988888888777 999999999999888887 999999999999987776 2234678
Q ss_pred EEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEE-Ee---ccccceeEEEecCCCCE
Q 015198 157 YSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKL-IN---AHDSHIACFTLTLDGLL 230 (411)
Q Consensus 157 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~---~~~~~i~~l~~sp~g~~ 230 (411)
|++. ++...+.+... ..+.|+-+-....+ |.......+|+... .++.+ +. +....-++..|+|+..+
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred hccccccCcccccccc----ceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 9984 35555555432 23444444322222 43344566666543 33333 21 22333367889999988
Q ss_pred EEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198 231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
++ +||. +||++..+.++.|.. ....+ .=.|+|.|..++.-+ .|||+++-+-.+
T Consensus 1245 Il---ndGv---LWDvR~~~aIh~FD~--ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1245 IL---NDGV---LWDVRIPEAIHRFDQ--FTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred Ee---eCce---eeeeccHHHHhhhhh--heecc-cccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 77 6776 899998888877765 22222 235899999887754 589999877554
No 345
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.71 E-value=0.02 Score=52.92 Aligned_cols=235 Identities=15% Similarity=0.112 Sum_probs=102.0
Q ss_pred CCeEEEEEc-----------CCCCEEEEEe--CCcEEEEecCCC--cceEEeecC-------CCCEEEEEEeccCCeEEE
Q 015198 45 IELISVSWN-----------QDYGCFAAGT--SCGFRIYNCEPF--KETFRRDLK-------SGGFRIVEMLFRCNILAL 102 (411)
Q Consensus 45 ~~V~~l~~s-----------~~g~~la~g~--dg~i~iw~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l 102 (411)
+.....-|+ .+.++|++.+ .+.|.|.|+.+. +..+.+.+. .+-.......--+++.++
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 455666665 2467888877 899999998743 222222221 111222223334667555
Q ss_pred EecCCCC-CCCCCeEEEEECCCCcEEEEEee----cCceeEEEEcCCeEEEE-----------------------EcCeE
Q 015198 103 VGAGDNS-QYPPTKVIIWDDHQSRCIGEFAF----RSDVRSVKLSRDRIVVV-----------------------LEHKI 154 (411)
Q Consensus 103 ~s~~~d~-~~~d~~i~vwd~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~-----------------------~dg~i 154 (411)
+++-.++ ....|.+.+.|-++.+.+..... ..--..+-|.|....++ ...++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 5432221 12347888888777777766652 22234455566544443 24689
Q ss_pred EEEEcCCceeeEEEeccCCCcce--EEEccCCCceEEEEecCCCCeEEEEEc-C-C----cceEEEecc-----------
Q 015198 155 YVYSFVDLKLLHQIETLANLRGL--CCLSHHSSTSVLACPGLQRGQVRIEHF-G-L----NMIKLINAH----------- 215 (411)
Q Consensus 155 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~dg~i~i~~~-~-~----~~~~~~~~~----------- 215 (411)
++||+.+.+.++.+......... +.+..+|+..+=++.+--..+|..|-. . + +.+..+...
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 99999999999999876543222 445556654432222223445555433 2 1 222222211
Q ss_pred ------ccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCc---eEEEEeCC--------------CCCcceEEEEeCC
Q 015198 216 ------DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGT---RLQEVRRG--------------VDRAEIYSIALSP 271 (411)
Q Consensus 216 ------~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~sp 271 (411)
..-|+.|.+|.|.++|..+. ..|. |+.||+.+-. +..++..+ .-.+...-+..|.
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 23478999999999887655 5787 9999997642 33332211 0112346788999
Q ss_pred CCCEEEEEe
Q 015198 272 NVQWLAVAS 280 (411)
Q Consensus 272 dg~~l~s~s 280 (411)
||+.|+..+
T Consensus 384 DGkRlYvTn 392 (461)
T PF05694_consen 384 DGKRLYVTN 392 (461)
T ss_dssp TSSEEEEE-
T ss_pred CCeEEEEEe
Confidence 999887665
No 346
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.64 E-value=0.056 Score=50.65 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=55.6
Q ss_pred ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe-CCC----------------CCE-EE
Q 015198 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-SPN----------------VQW-LA 277 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-spd----------------g~~-l~ 277 (411)
...+.+++.+|++++.|+...-|. |.++|+.++..++.+++..+. .+.-+.. ... ..+ ++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 446888999999999998888888 999999999888888774221 1111111 111 112 33
Q ss_pred EEeCCCcEEEEEccccccC
Q 015198 278 VASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 278 s~s~dg~I~vwd~~~~~~~ 296 (411)
-+-.-|.|.||.+++|.+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EeccCCeEEEEecCCCCEE
Confidence 4667889999999999865
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.64 E-value=0.0076 Score=56.07 Aligned_cols=230 Identities=11% Similarity=0.038 Sum_probs=125.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCC----------------CEEEEEEeccCCeEEEEecCC
Q 015198 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG----------------GFRIVEMLFRCNILALVGAGD 107 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~s~~~ 107 (411)
...+....|+|+|+.+|...++.|.+++..+.. .......+. -..-..+.|+|++..|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 567889999999999999999999999886542 222221110 001134557777655553322
Q ss_pred CCC----------------C---------------CCCeEEEEECCCCcEEE-EEe-----ecCceeEEEEcCCeE-EEE
Q 015198 108 NSQ----------------Y---------------PPTKVIIWDDHQSRCIG-EFA-----FRSDVRSVKLSRDRI-VVV 149 (411)
Q Consensus 108 d~~----------------~---------------~d~~i~vwd~~~~~~~~-~~~-----~~~~i~~~~~~~~~~-~~~ 149 (411)
|.. | ..-.+.|+|+.+++... ... ...-+..+.|.+++. +++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 200 0 11255667777765432 111 234577888999888 444
Q ss_pred -------EcCeEEEEEcCCceeeEEEeccCC-C---cceEEEc-cCCCceEEEEecCCCCeEEE--EEcCCcceEEEecc
Q 015198 150 -------LEHKIYVYSFVDLKLLHQIETLAN-L---RGLCCLS-HHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAH 215 (411)
Q Consensus 150 -------~dg~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~ 215 (411)
....+.++|..+++....+..... - .....+. .+.. .++.. ...+|.-.| .+..+.....+...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~-s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWI-SERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEE-EETTSSEEEEEEETTSSEEEESS-S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEE-EEcCCCcEEEEEcccccceeccccC
Confidence 134577778877655433332211 1 1223332 3333 33333 336776666 55556666666666
Q ss_pred ccceeE-EEecCCCCEEE-EEcCC----CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198 216 DSHIAC-FTLTLDGLLLA-TASTR----GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 216 ~~~i~~-l~~sp~g~~l~-s~s~d----g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (411)
.-.|.. +.++++++.|. ++..+ .. |+.-++..+..+..+... ......+.|||+|++++..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~-lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERH-LYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBE-EEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceE-EEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence 666744 67788877544 55542 24 666677624444555542 2222689999999987744
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.64 E-value=0.0062 Score=57.72 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=54.8
Q ss_pred ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (411)
.+++.+++++...++. |+.||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-...
T Consensus 261 ~v~~ca~sp~E~kLvl-GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALspi 333 (545)
T PF11768_consen 261 QVICCARSPSEDKLVL-GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSPI 333 (545)
T ss_pred cceEEecCcccceEEE-EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCcc
Confidence 3445555555556655 77999999998776644433 44566789999999999999999999 99999865443
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.002 Score=61.95 Aligned_cols=153 Identities=12% Similarity=0.212 Sum_probs=88.7
Q ss_pred CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc--
Q 015198 134 SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-- 208 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-- 208 (411)
..|.--+++..+.+++ .-|.+++|+-..++.. .++........+....++...++| .|+..|.|.++..+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvA-agt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVA-AGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhh-hhcCCceEEeehhhccCCC
Confidence 3343344455555555 6799999996555443 332211222334444444444444 57788999885544321
Q ss_pred ----eEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198 209 ----IKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279 (411)
Q Consensus 209 ----~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 279 (411)
+... +.|...|++++|++++..+++|...|. |.+-.+.+. ...+.+.. ....|-.|... ++.+|+ +
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s~~~~~~~~q~il~--~ds~IVQlD~~-q~~LLV-S 186 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDSRQAFLSKSQEILS--EDSEIVQLDYL-QSYLLV-S 186 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCce-EEEEEechhhhhccccceeec--cCcceEEeecc-cceehH-h
Confidence 1111 247789999999999999999999999 888877662 11122222 34567666654 333343 3
Q ss_pred eCCCcEEEEEccccc
Q 015198 280 SDKGTVHIFSLRVRV 294 (411)
Q Consensus 280 s~dg~I~vwd~~~~~ 294 (411)
+.-. ..+++++.++
T Consensus 187 tl~r-~~Lc~tE~et 200 (726)
T KOG3621|consen 187 TLTR-CILCQTEAET 200 (726)
T ss_pred hhhh-hheeecchhH
Confidence 3333 4566666554
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.62 E-value=0.024 Score=53.12 Aligned_cols=235 Identities=16% Similarity=0.095 Sum_probs=114.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC---
Q 015198 46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--- 121 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~--- 121 (411)
.|+.++|.++..-|++|. .|.|.||.+...+..-... ......+.+.+ +-..... ...+-|-+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~----~~~~~~~----~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRR----FSLNNSP----GKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S------GGGSS-----SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC----CCcccCccccc----ccccCCC----cceEEehhhCCc
Confidence 589999999988999999 9999999887533211000 00111111000 0000000 011111111
Q ss_pred --CCC-cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccC------C--CcceEEEc---cCC
Q 015198 122 --HQS-RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA------N--LRGLCCLS---HHS 184 (411)
Q Consensus 122 --~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~------~--~~~~~~~~---~~~ 184 (411)
+.| .+...+. ..++|++++.+.-|...+ .+|.+.|.|++....+..-.... . .+..+.|. ...
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 111 1222223 478999999998888777 68999999998888776643222 1 11122222 223
Q ss_pred C--ceEEEEecCCCCeEEEEEcC----Ccc----eEEEeccccceeEEE-ecCC-----------------C----CEEE
Q 015198 185 S--TSVLACPGLQRGQVRIEHFG----LNM----IKLINAHDSHIACFT-LTLD-----------------G----LLLA 232 (411)
Q Consensus 185 ~--~~~l~~~g~~dg~i~i~~~~----~~~----~~~~~~~~~~i~~l~-~sp~-----------------g----~~l~ 232 (411)
| ...++.+|...|.+.++... +.- ......+.++|..|. |+.+ | .+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 3 23444557788998886433 111 111224556665554 3221 1 1444
Q ss_pred EEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC-----CCCCEEEEEeCCCcEEEEEccccccC
Q 015198 233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS-----PNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
+++ +.. |+++...+.+....... .......+.+- ..+..|++-..+|.|++|.+..-+..
T Consensus 231 vvS-e~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 231 VVS-ESD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE--SSE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEc-ccc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 444 455 99999988877665543 32233344442 35667888899999999999876643
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.039 Score=48.03 Aligned_cols=197 Identities=14% Similarity=0.024 Sum_probs=96.2
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i 116 (411)
.+.+-...+..|+|+|+...|++-. .+.|..++.+ ++.+.+..+ .+....-.+.+..++.++++...+ +.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~g~~D~EgI~y~g~~~~vl~~Er~-----~~L 88 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-DGFGDYEGITYLGNGRYVLSEERD-----QRL 88 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS-SSEEEEEE-STTEEEEEETTT-----TEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-CCCCCceeEEEECCCEEEEEEcCC-----CcE
Confidence 3556666799999999866555444 6666656654 244444445 333445566777888888877666 899
Q ss_pred EEEECCCCc------EEEEEe------ecCceeEEEEcCCe-EEEE--EcCeEEEEEcCC---ceeeEEEec--cC----
Q 015198 117 IIWDDHQSR------CIGEFA------FRSDVRSVKLSRDR-IVVV--LEHKIYVYSFVD---LKLLHQIET--LA---- 172 (411)
Q Consensus 117 ~vwd~~~~~------~~~~~~------~~~~i~~~~~~~~~-~~~~--~dg~i~iwd~~~---~~~~~~~~~--~~---- 172 (411)
.++++.... ....+. .+..+..++|++.+ .+++ ...-..+|.+.. ...+..... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 988873321 122232 23568999999853 3333 343344444432 112211110 00
Q ss_pred CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccc---------cceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198 173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRI 243 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~v 243 (411)
......+++.++....|..-+.....|...+..++.+..+.-.. ...-.|+|.++|++.++ ++-+. .++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-fy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-FYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-EEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-EEE
Confidence 11122334444443333333456777777888888766654332 24678999999975554 45555 555
Q ss_pred E
Q 015198 244 F 244 (411)
Q Consensus 244 w 244 (411)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.088 Score=51.66 Aligned_cols=235 Identities=10% Similarity=0.025 Sum_probs=128.6
Q ss_pred CEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198 57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF 132 (411)
Q Consensus 57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~ 132 (411)
..+++++ ++.+.-.|.++++.+....+..... .+.. .... ++.+++..+....-.++.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 3556666 8888888988888777665421111 1111 1111 34444443210001238999999999998887652
Q ss_pred --cC------------------------------ce-eEEEEcCCeEEEE--E------c-----------CeEEEEEcC
Q 015198 133 --RS------------------------------DV-RSVKLSRDRIVVV--L------E-----------HKIYVYSFV 160 (411)
Q Consensus 133 --~~------------------------------~i-~~~~~~~~~~~~~--~------d-----------g~i~iwd~~ 160 (411)
.. .+ ..+.+.+...++. . + ..|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 01 1234555433333 1 1 267888999
Q ss_pred CceeeEEEeccCCCcc---------eEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEE--------Ee---c-cc-c
Q 015198 161 DLKLLHQIETLANLRG---------LCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKL--------IN---A-HD-S 217 (411)
Q Consensus 161 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~--------~~---~-~~-~ 217 (411)
+|+....++...+... .+.+..++...-++..+..+|.+++.+. +++.+.. .. . .. .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 9999888765433222 1222223322234445778999998444 4554311 10 0 00 0
Q ss_pred c----------------------------eeEEEecCCCCEEEEEcCC--------------------------------
Q 015198 218 H----------------------------IACFTLTLDGLLLATASTR-------------------------------- 237 (411)
Q Consensus 218 ~----------------------------i~~l~~sp~g~~l~s~s~d-------------------------------- 237 (411)
+ -..++++|+..+++....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 0 0125566665555433222
Q ss_pred -CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 238 -GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 238 -g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
|. |.-+|+.+|+.+........ ...+. +.-.+.+++.++.+|.++.+|.++|+..
T Consensus 440 ~g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 440 MGS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred cee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 45 78888889988776654211 11111 1124557777888999999999999864
No 353
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.55 E-value=0.059 Score=48.39 Aligned_cols=234 Identities=15% Similarity=0.150 Sum_probs=107.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCC----CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS----GGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
-...+..|.|..+..-+++|..+. |+....+.+........ .......+.|..+..++++ .. +. .+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g~-ll 84 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------GL-LL 84 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------TE-EE
T ss_pred CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------ce-EE
Confidence 455899999997777788887775 55555545444432111 1234556667666555543 21 43 33
Q ss_pred EECCCCcEEEEEe----ecCceeEEEE-cCCeEEEE-EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198 119 WDDHQSRCIGEFA----FRSDVRSVKL-SRDRIVVV-LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLAC 191 (411)
Q Consensus 119 wd~~~~~~~~~~~----~~~~i~~~~~-~~~~~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (411)
.-...|+.=..+. .+.....+.. .+....++ ..|. ||...+ |+.=+.+.. .....+..+...+++.++++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav 161 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV 161 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE
Confidence 3334454333332 2233333333 33333333 2333 333322 222122211 11224556667788888876
Q ss_pred ecCCCCeEEE-EEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEEC-CCCceEEE--EeCCCCCcceEE
Q 015198 192 PGLQRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT-VDGTRLQE--VRRGVDRAEIYS 266 (411)
Q Consensus 192 ~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~-~~~~~~~~--~~~~~~~~~v~~ 266 (411)
+ ..|.+++ |+.....-... ..-...|..|.|.|++.+.+.+ ..|. |++=+. ...+.... .......-.+..
T Consensus 162 s--~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 162 S--SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp E--TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred E--CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEE
Confidence 4 5677777 76654433333 3356889999999998876655 6777 777762 22222111 111112225889
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 267 IALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
++|.+++...++|+ .|. .+...+.|+.
T Consensus 238 ~a~~~~~~~wa~gg-~G~-l~~S~DgGkt 264 (302)
T PF14870_consen 238 LAYRPPNEIWAVGG-SGT-LLVSTDGGKT 264 (302)
T ss_dssp EEESSSS-EEEEES-TT--EEEESSTTSS
T ss_pred EEecCCCCEEEEeC-Ccc-EEEeCCCCcc
Confidence 99999887777655 442 4445555553
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0079 Score=58.88 Aligned_cols=152 Identities=12% Similarity=0.019 Sum_probs=99.0
Q ss_pred ccCCCCCCeEEEEEcCC-------------CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-----e
Q 015198 39 FSDVDEIELISVSWNQD-------------YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-----I 99 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~-------------g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 99 (411)
.+..|.+.|.-..+.-+ |+++++|+ ||.|.|-.+.+.+......+ ...+..++++|+ .
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~s 129 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQS 129 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhh
Confidence 35667777776666555 99999999 99999999888777666655 334555566665 3
Q ss_pred EEEEecCCCCCCCCCeEEEEE---CCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCc-
Q 015198 100 LALVGAGDNSQYPPTKVIIWD---DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLR- 175 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 175 (411)
..+++|+.. | +.++. +.....+..-...++|.++.|..+-...+.|-.|++||+.+.+.+..++......
T Consensus 130 k~fv~GG~a-----g-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 130 KQFVSGGMA-----G-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred hheeecCcc-----e-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCC
Confidence 566777664 6 77776 2223333222268999999998765555589999999999888877765443222
Q ss_pred ---ceEEEccCCCceEEEEecCCCCeEEEE
Q 015198 176 ---GLCCLSHHSSTSVLACPGLQRGQVRIE 202 (411)
Q Consensus 176 ---~~~~~~~~~~~~~l~~~g~~dg~i~i~ 202 (411)
....+.|.++..+++ | ...+|+|-
T Consensus 204 ~e~fpphl~W~~~~~LVI--G-W~d~v~i~ 230 (846)
T KOG2066|consen 204 PELFPPHLHWQDEDRLVI--G-WGDSVKIC 230 (846)
T ss_pred cccCCCceEecCCCeEEE--e-cCCeEEEE
Confidence 223445555544442 3 34466663
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.50 E-value=0.02 Score=53.34 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=90.0
Q ss_pred CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC---------------cc
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL---------------RG 176 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~ 176 (411)
+.+.++|+.+++..........+....|+|+|..++ .++.|+++++.+++..+.-...... ..
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 789999999876555444578899999999999998 8999999998777443222111000 01
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--ccc---ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDS---HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~---~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (411)
..++-|+|+++.||+.-..+..|.. +..... ... .+..+.+-.-|.-... -. +.|+|+.+++.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~----v~-l~v~~~~~~~~ 170 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPR----VS-LFVVDLASGKT 170 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---E----EE-EEEEESSSTCC
T ss_pred ccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCc----eE-EEEEECCCCcE
Confidence 1234455666666653323322222 111111 111 2333333222221111 12 67789988875
Q ss_pred EE-EEeC--CCCCcceEEEEeCCCCCEEEEE--eCCC---cEEEEEcccccc
Q 015198 252 LQ-EVRR--GVDRAEIYSIALSPNVQWLAVA--SDKG---TVHIFSLRVRVV 295 (411)
Q Consensus 252 ~~-~~~~--~~~~~~v~~l~~spdg~~l~s~--s~dg---~I~vwd~~~~~~ 295 (411)
.. .... ......+..+.|.++++.|+.. ..+. .+.++|..++..
T Consensus 171 ~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 171 TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 32 2220 1134578999999999844433 2222 366667766553
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00056 Score=65.59 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=85.4
Q ss_pred ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--
Q 015198 176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-- 251 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-- 251 (411)
...++.... .+++. |+.-|.++++...+.....++. ..+.+..+.++++..++|.|+..|. |.++-+..+..
T Consensus 37 ~lTc~dst~--~~l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 37 KLTCVDATE--EYLAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD 112 (726)
T ss_pred EEEEeecCC--ceEEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence 444555443 56665 7789999999988877666654 5566777888999888899998898 99998766432
Q ss_pred -EEEE-eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 252 -LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 252 -~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
+..- ....|...|++++|++|+..+++|...|+|..-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 1122677999999999999999999999999999888
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00045 Score=40.04 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
+.+..+.. |...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555655 677899999999999999999999999996
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00058 Score=64.71 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=66.7
Q ss_pred cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE-EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY-SIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
..|..+.|+|.-.+||.+..+|. |.+..++ .+.+.++.. +...++ +++|.|||+.||+|-.||+|++.|+.++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45677899999999999999999 9999886 777788875 333455 999999999999999999999999999987
Q ss_pred CC
Q 015198 296 GE 297 (411)
Q Consensus 296 ~~ 297 (411)
.+
T Consensus 97 l~ 98 (665)
T KOG4640|consen 97 LV 98 (665)
T ss_pred ee
Confidence 65
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.44 E-value=0.093 Score=48.22 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=92.2
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEE--ecCCCcceEEeecCCCC-EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198 49 SVSWNQDYGCFAAGT--SCGFRIY--NCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ 123 (411)
Q Consensus 49 ~l~~s~~g~~la~g~--dg~i~iw--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~ 123 (411)
.=+|.+||+.|+.++ +|.-.+| |+++.+. .. |..+. ........+++...++-.... ..|+-.|+.+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~Q--LTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T 111 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQ--LTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDT 111 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE-----SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-EE--CccCCCCCccceEEecCCCeEEEEECC-----CeEEEEECCc
Confidence 346778897776655 6665555 5555332 22 21221 111112222332222211111 6888899999
Q ss_pred CcEEEEEeecCc-eeEEEE--cCCeEEEE-------------------------EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198 124 SRCIGEFAFRSD-VRSVKL--SRDRIVVV-------------------------LEHKIYVYSFVDLKLLHQIETLANLR 175 (411)
Q Consensus 124 ~~~~~~~~~~~~-i~~~~~--~~~~~~~~-------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 175 (411)
.+....+..... +-...| +.|+..++ ....|.-.|+.+|+....+... .-.
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl 190 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL 190 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc
Confidence 887666663322 222333 44555554 1245677788888766555432 223
Q ss_pred ceEEEccCCCceEEEEe-cCCCC-eEEEEEcC--CcceEEEeccc--cceeEEEecCCCCEEEEE-----cCCCeEEEEE
Q 015198 176 GLCCLSHHSSTSVLACP-GLQRG-QVRIEHFG--LNMIKLINAHD--SHIACFTLTLDGLLLATA-----STRGTLIRIF 244 (411)
Q Consensus 176 ~~~~~~~~~~~~~l~~~-g~~dg-~i~i~~~~--~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~-----s~dg~~I~vw 244 (411)
.-+.++|.....++.|- |-.+. .-+||..+ +.....+..+. ..+.-=-|.|||..|..- +.+.. |.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEee
Confidence 33445554433222221 22222 13566544 33333333222 223334588999866542 22345 7778
Q ss_pred ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
|+.+++....... + ....+--++||++++-=+.|
T Consensus 270 d~~t~~~~~~~~~---p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 270 DPDTGERRRLMEM---P-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCCceEEEeC---C-ceeeeEEcCCCCEEEecCCC
Confidence 8888876433332 1 34567778999988754443
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.42 E-value=0.18 Score=51.04 Aligned_cols=230 Identities=14% Similarity=0.189 Sum_probs=138.8
Q ss_pred CCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEE-ecCCC--------CCCCCCeEEEEECCCCcE
Q 015198 56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDN--------SQYPPTKVIIWDDHQSRC 126 (411)
Q Consensus 56 g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d--------~~~~d~~i~vwd~~~~~~ 126 (411)
...|+.+..+.+++.-++..++...+.+ .-......+++.+....+. .+..- +.+.-..++++|-++.+.
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 3467777788888888877665544443 2333344555665333222 22111 011124678888777776
Q ss_pred EEEEee--cC---ceeEEEEcCC-eEEEE-------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 127 IGEFAF--RS---DVRSVKLSRD-RIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 127 ~~~~~~--~~---~i~~~~~~~~-~~~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
+...++ .. .|.+..|..| +.+++ ..|.|.+|.+..++.+.....+.-...+.++..- +++
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe
Confidence 666552 22 3444457666 44333 2588899888764444444332222233444332 346
Q ss_pred EEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC--CceEEEEeCCCCCcce
Q 015198 188 VLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRAEI 264 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~~v 264 (411)
++|. -+..|+++.+..+ .++.-..+..++..+.+.-.|..++.|.--+. |.+...+. |... .+....+...+
T Consensus 842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wm 916 (1096)
T KOG1897|consen 842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWM 916 (1096)
T ss_pred EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccce
Confidence 6654 4568999777665 55555678889999999999999999998887 77655443 3333 34333366678
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 265 YSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
+++.+-.+ ..++.+..+|.+.+-..++.
T Consensus 917 taveil~~-d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 917 TAVEILDD-DTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eeEEEecC-ceEEeecccccEEEEEecCC
Confidence 88887654 45556778888888777643
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.42 E-value=0.022 Score=57.48 Aligned_cols=129 Identities=13% Similarity=0.211 Sum_probs=87.5
Q ss_pred CeEEEEECCCCcEEEEEeecC--ceeEEEEc-------CCeEEEE-EcCeEEEEEcCCc--eeeE-EEeccCCCcceEEE
Q 015198 114 TKVIIWDDHQSRCIGEFAFRS--DVRSVKLS-------RDRIVVV-LEHKIYVYSFVDL--KLLH-QIETLANLRGLCCL 180 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~--~i~~~~~~-------~~~~~~~-~dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~ 180 (411)
..|+-.|++.|+.+.++.... +|..++-. +...++. .++.+..||.+-. +++. ....-.......|+
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 889999999999999998433 35554432 3344555 7899999999753 2331 11111222345677
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
+.+.+|.+ |+ |+.+|.|++++..+. ....+.+-..+|..|..+.||++|++.+. .. +.+++.
T Consensus 584 aTt~~G~i-av-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-ty-LlLi~t 646 (794)
T PF08553_consen 584 ATTEDGYI-AV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TY-LLLIDT 646 (794)
T ss_pred EecCCceE-EE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ce-EEEEEE
Confidence 77777744 43 779999999776553 34445677899999999999998876664 34 667764
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.41 E-value=0.00054 Score=39.69 Aligned_cols=37 Identities=30% Similarity=0.617 Sum_probs=32.8
Q ss_pred ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 208 MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
....+..|...|.++.|++++.++++++.|+. +++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 45566788899999999999999999999999 99996
No 363
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.40 E-value=0.062 Score=45.25 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=115.5
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC--CCcEEEEE
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEF 130 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~--~~~~~~~~ 130 (411)
+.++.+-- .+.|.-||... .+..+..+..... .+.-+.-.|+... ++++.. -.|.-||.. .-....++
T Consensus 27 ~sLl~VDi~ag~v~r~D~~q-n~v~ra~ie~p~~ag~ilpv~~~~q~~~-v~~G~k-----f~i~nwd~~~~~a~v~~t~ 99 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQ-NKVYRAKIEGPPSAGFILPVEGGPQEFA-VGCGSK-----FVIVNWDGVSESAKVYRTL 99 (310)
T ss_pred ceEEEEEeccCceehhhhhh-hheEEEEEecCcceeEEEEecCCCceEE-Eeecce-----EEEEEcccccceeeeeeec
Confidence 44555555 78888899986 4444444423221 1112222233433 444332 566678732 22333332
Q ss_pred ---e---ecCceeEEEEcCCeEEEE------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198 131 ---A---FRSDVRSVKLSRDRIVVV------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 131 ---~---~~~~i~~~~~~~~~~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
+ .+...+.-..+|+|++.+ ..|.++.|-.. ..+..+...-. -.-.++|+.+.+.+.+.
T Consensus 100 ~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~--IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 100 FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVG--ISNGLAWDSDAKKFYYI 175 (310)
T ss_pred cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhcc--CCccccccccCcEEEEE
Confidence 1 245667778899999876 13555555432 12222221111 22356677777777777
Q ss_pred cCCCCeEEEEEcCC--------cceEEEec---ccc-ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC
Q 015198 193 GLQRGQVRIEHFGL--------NMIKLINA---HDS-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (411)
Q Consensus 193 g~~dg~i~i~~~~~--------~~~~~~~~---~~~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (411)
-+.+-.|.-|+++. +.+..++. ... .--.+++..+|.+.++.-..++ |...|..+|+.+.+++- .
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--P 252 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--P 252 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--C
Confidence 77777777777442 12222221 111 1234556678888887777788 99999999999999987 4
Q ss_pred CcceEEEEeCC
Q 015198 261 RAEIYSIALSP 271 (411)
Q Consensus 261 ~~~v~~l~~sp 271 (411)
...|++++|--
T Consensus 253 t~qitsccFgG 263 (310)
T KOG4499|consen 253 TPQITSCCFGG 263 (310)
T ss_pred CCceEEEEecC
Confidence 56899999964
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00094 Score=63.36 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=73.8
Q ss_pred cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecccccee-EEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ 253 (411)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~ 253 (411)
..+..+.|+|.-.++|. +..+|.|.+...+.+.+..+..|...++ +++|.|||++||.|-.||+ |++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCcee
Confidence 34555667777677776 6689999997777888888887877777 9999999999999999999 9999999998876
Q ss_pred EEeCCCCCcceEEEEeCC
Q 015198 254 EVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 254 ~~~~~~~~~~v~~l~~sp 271 (411)
.+... ....|.++-|.+
T Consensus 99 ~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-VETDISKGIWDR 115 (665)
T ss_pred ccccc-cccchheeeccc
Confidence 63221 344677777763
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.36 E-value=0.15 Score=48.72 Aligned_cols=195 Identities=10% Similarity=0.081 Sum_probs=102.3
Q ss_pred EEEEEeccCCeEEEEe-----cCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--------E-----
Q 015198 89 RIVEMLFRCNILALVG-----AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------L----- 150 (411)
Q Consensus 89 ~~~~~~~~~~~~~l~s-----~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------~----- 150 (411)
.+..+.++|++..++- |++. ..|+++|+++|+.+...-.......+.|.+++..++ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~-----~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW-----YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE-----EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCce-----EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 3335677887765542 2332 689999999997765432222233499999976665 1
Q ss_pred -cCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEEecC--CC-CeEEEEEcCC-----cceEEEeccccce
Q 015198 151 -EHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGL--QR-GQVRIEHFGL-----NMIKLINAHDSHI 219 (411)
Q Consensus 151 -dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~d-g~i~i~~~~~-----~~~~~~~~~~~~i 219 (411)
...|+.|.+.+...- ..+.........+.+..+.++++|++... .+ ..+++-+... .....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 335888998765432 34444444433566666777777654332 22 3455533333 2344444444444
Q ss_pred eEEEecCCCCEEEEEcC---CCeEEEEEECCCCce---EEEEeCCCCCcceEEEEeCCCCCEEE-EEeCCC--cEEEEEc
Q 015198 220 ACFTLTLDGLLLATAST---RGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIALSPNVQWLA-VASDKG--TVHIFSL 290 (411)
Q Consensus 220 ~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg--~I~vwd~ 290 (411)
....-+..+.+++.... ++. |...++.+... ...+..+.....+..+.. .+.+|+ ....++ .|+++++
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 33322334444444332 355 76778776652 224444212224555554 344444 444454 5888888
Q ss_pred c
Q 015198 291 R 291 (411)
Q Consensus 291 ~ 291 (411)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 8
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.35 E-value=8.1e-05 Score=70.38 Aligned_cols=197 Identities=13% Similarity=0.166 Sum_probs=114.9
Q ss_pred EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE-EEE--eecCceeEEEEcCC-eEEEE-------EcCeEEEE
Q 015198 89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEF--AFRSDVRSVKLSRD-RIVVV-------LEHKIYVY 157 (411)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~-~~~--~~~~~i~~~~~~~~-~~~~~-------~dg~i~iw 157 (411)
.+++..++.+..+++.|..+ |.|.+-.++....- .++ .+....++++|++- ...++ .|..+.||
T Consensus 60 kcva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred eeehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34444445555566666665 88888876543322 222 26778899999985 33333 57889999
Q ss_pred EcCCc--eee--EEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecC-CCCEE
Q 015198 158 SFVDL--KLL--HQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLL 231 (411)
Q Consensus 158 d~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l 231 (411)
|+.++ .+. ..+.. ...... .++|..+.+++. +|.....+.+.+.+.............+..+.+.| .+.++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqn--s~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQN--SVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ecccccCCCccccccccccccCcc--ccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce
Confidence 99765 111 11211 111112 334444444544 57777788886665444333333344566677888 77788
Q ss_pred EEEcCCCeEEEEEE-CCCCc-eEEEEeCCC--CCcceEEEEeCCCCC-EEEEEeC-CCcEEEEEcccccc
Q 015198 232 ATASTRGTLIRIFN-TVDGT-RLQEVRRGV--DRAEIYSIALSPNVQ-WLAVASD-KGTVHIFSLRVRVV 295 (411)
Q Consensus 232 ~s~s~dg~~I~vwd-~~~~~-~~~~~~~~~--~~~~v~~l~~spdg~-~l~s~s~-dg~I~vwd~~~~~~ 295 (411)
++-. ||. |.+|| ...-+ ++..+.... ....+..++|+|... .|++... .++|+++++..-..
T Consensus 212 cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t 279 (783)
T KOG1008|consen 212 CSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT 279 (783)
T ss_pred eccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence 7766 888 99999 33322 222222110 122588999999543 4455554 56899999976543
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.037 Score=41.02 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=48.7
Q ss_pred eeEEEec---CCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198 219 IACFTLT---LDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290 (411)
Q Consensus 219 i~~l~~s---p~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~ 290 (411)
|+++++. -+| +.|++|+.|.. ||+|+ ..+.+.++.. ...|..++-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4555544 344 47999999999 99997 4577777774 457888887766 56888889999988865
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.31 E-value=0.096 Score=45.63 Aligned_cols=196 Identities=10% Similarity=0.099 Sum_probs=101.4
Q ss_pred cCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEEE
Q 015198 83 LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYV 156 (411)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~i 156 (411)
+.+-...+..+.|.++ +.+++..... +.|...+. +|+.++.+.. -+....|++..++.+++ .++.+.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 4344445788889885 5555655555 89999995 6888888873 46788999999998888 3788999
Q ss_pred EEcCCc------eeeEEEe--cc-CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEE--------ecc
Q 015198 157 YSFVDL------KLLHQIE--TL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLI--------NAH 215 (411)
Q Consensus 157 wd~~~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~--------~~~ 215 (411)
+++... .....+. .. ......-.+++++.+..|+++ ....-..|+.... ..+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccce
Confidence 988321 1122222 11 122233445555443333332 2333344433322 111111 112
Q ss_pred ccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCC--C-----CcceEEEEeCCCCCEEEEEeCCCcEEE
Q 015198 216 DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGV--D-----RAEIYSIALSPNVQWLAVASDKGTVHI 287 (411)
Q Consensus 216 ~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--~-----~~~v~~l~~spdg~~l~s~s~dg~I~v 287 (411)
-..+.+++++|.. .+++.+..... |..+| .+|+.+..+.-.. | -...-.|+|.++|++. ..++-+..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEE
Confidence 3457889999865 45666666666 99999 6888766554321 1 1246789999999755 4556666666
Q ss_pred E
Q 015198 288 F 288 (411)
Q Consensus 288 w 288 (411)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 5
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.31 E-value=0.2 Score=49.19 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=105.3
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEE----------EEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIV----------EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS 124 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~ 124 (411)
+..|++++ ++.|.-.|..+++.+.+...... ..+. .+... ++.++++ ..+ +.|.-.|.++|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~-~~~v~v~-t~d-----g~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY-DGKVFFG-TLD-----ARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE-CCEEEEE-cCC-----CEEEEEECCCC
Confidence 34555555 88888889888887777654211 1111 01122 2333443 333 89999999999
Q ss_pred cEEEEEeecC-----ceeE-EEEcCCeEEEE-E-------cCeEEEEEcCCceeeEEEeccCCCc---------------
Q 015198 125 RCIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLR--------------- 175 (411)
Q Consensus 125 ~~~~~~~~~~-----~i~~-~~~~~~~~~~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~--------------- 175 (411)
+.+....... .+.+ ..+. ++.+++ . +|.|+.+|.++|+.+..+..-....
T Consensus 141 k~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 141 KVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred CEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 9988765211 1211 1122 444444 1 6899999999999887764321110
Q ss_pred ---------------ceEEEccCCCceEEEEecCC----------------CCeEEEEEcCCcceEEEeccccce-----
Q 015198 176 ---------------GLCCLSHHSSTSVLACPGLQ----------------RGQVRIEHFGLNMIKLINAHDSHI----- 219 (411)
Q Consensus 176 ---------------~~~~~~~~~~~~~l~~~g~~----------------dg~i~i~~~~~~~~~~~~~~~~~i----- 219 (411)
.-..++.+++..++....+. +..|.|+..+++..-.++.....+
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 00122445444444332211 123444555666655554322211
Q ss_pred ----eEEEecCCCC---EEEEEcCCCeEEEEEECCCCceE
Q 015198 220 ----ACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 220 ----~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~ 252 (411)
.-+.+..+|+ .++.+..+|. +++.|..+|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 1223334676 7889999999 999999999886
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.09 Score=44.98 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=25.7
Q ss_pred EcCCCCEEEEEe-CCcEEEEecCCCcceEEeec
Q 015198 52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL 83 (411)
Q Consensus 52 ~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~ 83 (411)
..+++.++.+|+ |++....|..+...+++.+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 456788999999 99999999888777777554
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.00072 Score=66.17 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=81.2
Q ss_pred EccCCCceEEEEec---CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198 180 LSHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR 256 (411)
Q Consensus 180 ~~~~~~~~~l~~~g---~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~ 256 (411)
.+|+|...+++++. ...|.|.|+...+++-.... ..-.+++++|+|..-.|+.|-.-|. +.+|...+.+. .++.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-htv~ 97 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HTVV 97 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCcee-eeec
Confidence 34445555665422 35688989877776543322 1233567999999989999999999 99998765544 3443
Q ss_pred CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
.. |+.+|..+.||++|..|+++..-|.|.+|.+..-
T Consensus 98 ~t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 98 ET-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred cC-CCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 33 8899999999999999999999999999998743
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.29 E-value=0.12 Score=46.20 Aligned_cols=221 Identities=16% Similarity=0.161 Sum_probs=114.3
Q ss_pred CCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE-----
Q 015198 54 QDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG----- 128 (411)
Q Consensus 54 ~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~----- 128 (411)
..++.|++|+++.+.+++........ .. .....+..+...++...++.-.+ +.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~-~i--~~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPT-RI--LKLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccce-eE--eecceEEEEEEecccCEEEEEcC------CccEEEEchhhccccccccc
Confidence 45788999994459999983212211 11 12223666666665443333322 899999976543333
Q ss_pred ----------EEeecCceeEEE---EcCCeEEEE--EcCeEEEEEcCCc-----eeeEEEeccCCCcceEEEccCCCceE
Q 015198 129 ----------EFAFRSDVRSVK---LSRDRIVVV--LEHKIYVYSFVDL-----KLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 129 ----------~~~~~~~i~~~~---~~~~~~~~~--~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
.+.....+...+ -......++ ....|.+|..... +..+++..... ...+.+.++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---~~~i~~~~~--~ 150 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---PSSIAFLGN--K 150 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC---cEEEEEeCC--E
Confidence 122233444444 122333333 6778888887542 45566655543 334444433 3
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEecc------------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE--E
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--E 254 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~ 254 (411)
+++ |..++...++..++.....+... ..++..+.. +++.+|++-. .. -.+.|. .|+..+ .
T Consensus 151 i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~-g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 151 ICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NI-GVFVNK-NGEPSRKST 224 (275)
T ss_pred EEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ce-EEEEcC-CCCcCcccE
Confidence 443 43555544444434332222111 123444444 3456666532 22 334443 554433 4
Q ss_pred EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198 255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300 (411)
Q Consensus 255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 300 (411)
+.. ...+.++++. ..+|++...++ |.||++.+++..+...
T Consensus 225 i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 225 IQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIP 264 (275)
T ss_pred EEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEE
Confidence 443 1245566663 35777766655 9999999998765433
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.28 E-value=0.033 Score=41.29 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=66.9
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcce
Q 015198 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL 177 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 177 (411)
.-|+.|++| ..|++|+ ..+.+.++.....|.++.-...+++.. .+|+|-+|+- .+.+..++....+...
T Consensus 16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 456666666 9999998 557888888889999999888777666 7999999984 3555566665555566
Q ss_pred EEEccCCCceEEEEecCCCCeEEE
Q 015198 178 CCLSHHSSTSVLACPGLQRGQVRI 201 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g~~dg~i~i 201 (411)
..+..+.++..-+++|-.+|.|-+
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEEe
Confidence 666666666544445767777653
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.24 E-value=0.031 Score=55.27 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=59.3
Q ss_pred EEccCCCceEEEEecC-----CCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE-------
Q 015198 179 CLSHHSSTSVLACPGL-----QRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF------- 244 (411)
Q Consensus 179 ~~~~~~~~~~l~~~g~-----~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw------- 244 (411)
....++++..+++... .|+ .|.+....+.......+ .......|+|+|..|++.......+++.
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 3344556666666541 233 34443333433222232 2378899999998887765332213333
Q ss_pred ----ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 245 ----NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 245 ----d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
++..++... . ....|..+.|||||..|+... +|.|+|=-+.
T Consensus 432 l~~~~vd~ge~~~---~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 432 LARTPVDASAVAS---R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred EEEEeccCchhhh---c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 333333221 1 245799999999999988766 4777774433
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0021 Score=64.81 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=71.8
Q ss_pred eEEEEecCCCCeEEEEEcCCcce--EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cc
Q 015198 187 SVLACPGLQRGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AE 263 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~ 263 (411)
..+++ |+..|.+...+.++... ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..
T Consensus 100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccce
Confidence 34554 55677777754444322 222334689999999999999999999999 999999999988887763222 13
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
|..+.+..++..++++...|. +|++.-.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 334445556667777777774 77775544
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.23 Score=46.70 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe--EEEEecC-CCCCCCCCeEEEEEC
Q 015198 47 LISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAG-DNSQYPPTKVIIWDD 121 (411)
Q Consensus 47 V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~-~d~~~~d~~i~vwd~ 121 (411)
-..++.++.+..+.+.. ++.|.+.|..+......... +. ....+.+++++ .+++-.. .+ +.+.+.|.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid~ 147 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVIDA 147 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEeC
Confidence 45778888888666555 79999999776444333322 22 44455666655 3333332 24 89999999
Q ss_pred CCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE-E----EeccCCCcceEEEccCCCceEEEEe
Q 015198 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-Q----IETLANLRGLCCLSHHSSTSVLACP 192 (411)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (411)
.+++.+........-..++++|++..+. .++.|.+.|.......+ . +..... .....+.++....+++..
T Consensus 148 ~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 148 ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEec
Confidence 9999888865332228999999998665 47999999976655543 1 222222 134555555554444443
Q ss_pred cCCCCeEEEEEcCCcceEEE--eccccceeEEEecCCCCEEEEEcCC-CeEEEEEECCCCceEEEEeCCCCC-cceEEEE
Q 015198 193 GLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIA 268 (411)
Q Consensus 193 g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~ 268 (411)
++.++.+..-+.....+... .........+.++|+|+.+.+.... +. +.+-|..+......+..+... ..+..++
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~~ 305 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSIA 305 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceecc
Confidence 33335666644444333332 1111145568899999988887555 66 999999888877766543221 2355666
Q ss_pred eCCC
Q 015198 269 LSPN 272 (411)
Q Consensus 269 ~spd 272 (411)
+.+.
T Consensus 306 ~~~~ 309 (381)
T COG3391 306 ISPL 309 (381)
T ss_pred ceee
Confidence 6554
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.03 E-value=0.19 Score=43.74 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=107.0
Q ss_pred CeEEEEEcCCCCEEEEEe-C--CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198 46 ELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH 122 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~ 122 (411)
-.-.+.|..+|.++-+.+ - ..|+.+|+++++......+ ....---.+....+..+..+--+ +...+||..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGITILGDKLYQLTWKE------GTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSS------SEEEEEETT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeEEEECCEEEEEEecC------CeEEEEccc
Confidence 345678877777666555 4 4689999998776666666 33444444555677777787655 999999999
Q ss_pred CCcEEEEEeecCceeEEEEcCCeEEEEEc--CeEEEEEcCCceeeEEEeccCCCcc---eEEEccCCCceEEEEecCCCC
Q 015198 123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLE--HKIYVYSFVDLKLLHQIETLANLRG---LCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~dg 197 (411)
+-+.+.++...+.=..++...+ .++..| ..++++|..+.+..+.+....+... .-.+.+- +|.+.|-.=..|.
T Consensus 119 tl~~~~~~~y~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp TTEEEEEEE-SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred cceEEEEEecCCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9999999998777778884433 344454 5688889888877777654332111 1122222 3444444444555
Q ss_pred eEEEEEcCCcceEEEec---------------cccceeEEEecCCCCEEEEEc
Q 015198 198 QVRIEHFGLNMIKLINA---------------HDSHIACFTLTLDGLLLATAS 235 (411)
Q Consensus 198 ~i~i~~~~~~~~~~~~~---------------~~~~i~~l~~sp~g~~l~s~s 235 (411)
.++|+..+++.+..+.. ...-.+.||++|....|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 56666666655544421 134578899988776555444
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.27 Score=42.88 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=110.2
Q ss_pred CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCce--eEEEEcCCeEEEE--EcCeEEEEEcC
Q 015198 85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV 160 (411)
Q Consensus 85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~--~dg~i~iwd~~ 160 (411)
........+.|..++.++-+.+.. ....|+.+|+.+++.......+... ..+....+..+.. .++...+||..
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc
Confidence 444445556675666666666553 2358999999999988877744333 3466667766666 79999999999
Q ss_pred CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEecc--c---cceeEEEecCCCCEEEEE
Q 015198 161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--D---SHIACFTLTLDGLLLATA 234 (411)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~--~---~~i~~l~~sp~g~~l~s~ 234 (411)
+.+.+.++.-... -..+..++ ..|+.+- ....+++.+. +.+....+... . ..++.+.+- +|.+.|=.
T Consensus 119 tl~~~~~~~y~~E---GWGLt~dg--~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 119 TLKKIGTFPYPGE---GWGLTSDG--KRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp TTEEEEEEE-SSS-----EEEECS--SCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred cceEEEEEecCCc---ceEEEcCC--CEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 9999988865532 23333443 3344432 2345666443 33444444332 2 235556664 67666666
Q ss_pred cCCCeEEEEEECCCCceEEEEeCC-------------CCCcceEEEEeCCCCCEEEEEe
Q 015198 235 STRGTLIRIFNTVDGTRLQEVRRG-------------VDRAEIYSIALSPNVQWLAVAS 280 (411)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~-------------~~~~~v~~l~~spdg~~l~s~s 280 (411)
-.... |...|..+|+.+..+... ....-.+.|++.|..+.|...+
T Consensus 192 W~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66666 888999999988766310 0134678999998776555444
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.02 Score=53.64 Aligned_cols=137 Identities=15% Similarity=0.308 Sum_probs=89.9
Q ss_pred cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE----ecCCCCeEEEEEcCCc---ceEEEecc----ccce
Q 015198 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC----PGLQRGQVRIEHFGLN---MIKLINAH----DSHI 219 (411)
Q Consensus 151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~dg~i~i~~~~~~---~~~~~~~~----~~~i 219 (411)
...++-.|++.|+.+..+..+.. +..+.+.++.++..|.. .|-.+..|.-|+.+-+ .+...+.| ....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35688889999999999887765 66777777655444321 1334555554554432 22222333 2345
Q ss_pred eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
.|.+-..+| +|++|+.+|. ||+||- .+....+.-.+ ...+|..+..+.||++|+..+ +..+.+-++.-.
T Consensus 434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~k 502 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLIK 502 (644)
T ss_pred ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEecc
Confidence 666666666 7999999999 999996 66544443322 566999999999999987554 556777776543
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.75 E-value=0.0072 Score=37.38 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
....|..++|+|...+||.++.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999999 444
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.025 Score=53.01 Aligned_cols=138 Identities=17% Similarity=0.276 Sum_probs=94.4
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe---------EEEE-EcCeEEEEEcCCc-e-eeEE
Q 015198 100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVDL-K-LLHQ 167 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~dg~i~iwd~~~~-~-~~~~ 167 (411)
.++.++... ..|+-.|++.|+.+.+......|.-+.+.|+. .++. .|+.|.-||.+-. + .+..
T Consensus 347 lil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 347 LILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred eEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 445555544 78999999999999999976668777787764 3333 7889999998632 2 2222
Q ss_pred EeccC--CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 168 IETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
-+.+. ......|++...+|.+ ++ |+.+|.|++++..+. ....+.+-..+|..|..+.+|++|+..+ +.. +.+-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~I-vv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty-LlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYI-VV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY-LLLI 497 (644)
T ss_pred eeccccccccccceeeecCCceE-EE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE-EEEE
Confidence 22221 1224556666666644 43 779999999877554 3445678899999999999999877655 344 6566
Q ss_pred EC
Q 015198 245 NT 246 (411)
Q Consensus 245 d~ 246 (411)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 54
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.74 E-value=0.16 Score=50.46 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCEEEEEe-------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-C------
Q 015198 44 EIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-S------ 109 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~------ 109 (411)
...+.+.+++|||+.+|... |..-.||-.......... . .+. ......|++++..+....+. .
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence 34688999999999887543 334455544332222222 1 222 36667788875544333211 0
Q ss_pred CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEE---EEcCCcee-e---EEEeccCCCcceEEE
Q 015198 110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYV---YSFVDLKL-L---HQIETLANLRGLCCL 180 (411)
Q Consensus 110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~i---wd~~~~~~-~---~~~~~~~~~~~~~~~ 180 (411)
....+.+.+.++..++... .....|..+.|+|||..++ .++.|++ -....|+. + ..+..... .....+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccC-Cccccc
Confidence 0011445555555544433 4466899999999999888 6888887 44344431 1 11211111 123556
Q ss_pred ccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCe
Q 015198 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
.|.+++.+++.....+..+..-..++.....+.. ...++..|+-+++ .|+....++.
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 6777766554332222233333344433332222 2455666665552 3444455553
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.61 E-value=0.58 Score=43.18 Aligned_cols=242 Identities=11% Similarity=0.069 Sum_probs=106.8
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC---CC--------------C
Q 015198 49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---NS--------------Q 110 (411)
Q Consensus 49 ~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~--------------~ 110 (411)
...++|+.+.++... ...++-.|+++.+......+...-.....+..+.+...++.... +- +
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 456678877776554 66788888888766555555344333333333334433332211 10 0
Q ss_pred CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E----cC-eEEEEEcC-CceeeEEEeccCCCcceEEEc
Q 015198 111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L----EH-KIYVYSFV-DLKLLHQIETLANLRGLCCLS 181 (411)
Q Consensus 111 ~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~----dg-~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 181 (411)
-....|.-.|+.+|+....+.....+..+.|+|....++ . +. .-+||-++ .+...+.+..+.....+-.=-
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 123578888999998877777888889999999755444 1 22 12555542 333333333332211222222
Q ss_pred cCCCceEEEEecC----CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC---------------eEEE
Q 015198 182 HHSSTSVLACPGL----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---------------TLIR 242 (411)
Q Consensus 182 ~~~~~~~l~~~g~----~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------------~~I~ 242 (411)
|.++|..|.+.+. .+..|.-.+........+. ...+..-+-.++||++++-=+.|. ..|+
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 4455555554322 1222222333322222221 111233455578998776433321 1267
Q ss_pred EEECCCCceEEEEeCCC--------C-CcceEEEEeCCCCCEEE-EEeCCCcEEEEEccc
Q 015198 243 IFNTVDGTRLQEVRRGV--------D-RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRV 292 (411)
Q Consensus 243 vwd~~~~~~~~~~~~~~--------~-~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~~~ 292 (411)
++++..++... +..+. + ...=-...|+|||++++ .+...|...||=++-
T Consensus 324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 78887765432 21110 0 01124678999999866 555677777775543
No 384
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.54 E-value=0.58 Score=42.36 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=106.6
Q ss_pred EEEEEcCCCCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-C
Q 015198 48 ISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-Q 123 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-~ 123 (411)
..++++.||+++++.. ...|.|-|++..+....... .+ +..+...++..+..-|++ |.+.-..+. .
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG---C~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG---CWLIYPSGNRGFSMLCGD------GSLLTVTLDAD 167 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS---EEEEEEEETTEEEEEETT------SCEEEEEETST
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC---EEEEEecCCCceEEEecC------CceEEEEECCC
Confidence 4568899999998877 77899999987555444433 22 222223333334444443 888888776 5
Q ss_pred CcEEEEEe--e---cCce-eEEEEc-CCeEEEE--EcCeEEEEEcCCce--eeEEEecc----------CCCcceEEEcc
Q 015198 124 SRCIGEFA--F---RSDV-RSVKLS-RDRIVVV--LEHKIYVYSFVDLK--LLHQIETL----------ANLRGLCCLSH 182 (411)
Q Consensus 124 ~~~~~~~~--~---~~~i-~~~~~~-~~~~~~~--~dg~i~iwd~~~~~--~~~~~~~~----------~~~~~~~~~~~ 182 (411)
|+...... + ..++ ..-.+. ..+.++. .+|.|+-.|+.... ....+... ......++++.
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 66653332 1 1222 222333 3344544 78999999886543 22233211 11123445544
Q ss_pred CCCceEEEEec-----CCCCeEEEEEcCC---cceEEEeccccceeEEEecCCCC-EEEE-EcCCCeEEEEEECCCCceE
Q 015198 183 HSSTSVLACPG-----LQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGL-LLAT-ASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 183 ~~~~~~l~~~g-----~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~-~l~s-~s~dg~~I~vwd~~~~~~~ 252 (411)
..+..+++.-. -.++.-.||..+. +.+..+.. ..++.+|+++.+.+ +|++ ...++. +.+||..+|+.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~ 325 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEE
Confidence 33333332211 1334444554443 34444442 35688999998876 5654 456788 999999999999
Q ss_pred EEEeC
Q 015198 253 QEVRR 257 (411)
Q Consensus 253 ~~~~~ 257 (411)
.++..
T Consensus 326 ~~~~~ 330 (342)
T PF06433_consen 326 RSIEQ 330 (342)
T ss_dssp EEE--
T ss_pred eehhc
Confidence 88875
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.2 Score=43.63 Aligned_cols=161 Identities=10% Similarity=0.030 Sum_probs=102.5
Q ss_pred CCCcEEEEEeecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC--
Q 015198 122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL-- 194 (411)
Q Consensus 122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-- 194 (411)
+.|+++........-..|.++|.....+ -.....++|..+.+....+....+.-..-.=.+++++.+|.++-.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 5678888777777778888988654433 245578899988777766654433222222245667778876531
Q ss_pred --CCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCC-------Ce----------EEEEEECCCCceEE
Q 015198 195 --QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTR-------GT----------LIRIFNTVDGTRLQ 253 (411)
Q Consensus 195 --~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-------g~----------~I~vwd~~~~~~~~ 253 (411)
.-|.|-|++.+. ..+-.+..|.-.-..+.+.+||+.|+.+... |. .+.+.|..+|+++.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 236777877654 4456677888778889999999998876531 00 13444555665543
Q ss_pred EEeCC--CCCcceEEEEeCCCCCEEEEEeCC
Q 015198 254 EVRRG--VDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 254 ~~~~~--~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
+.... .+.-.|..++..+||..++.+-..
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 33221 244578888888888877665443
No 386
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.45 E-value=0.00092 Score=63.51 Aligned_cols=198 Identities=12% Similarity=0.098 Sum_probs=116.0
Q ss_pred CCCCeEEEEEcCCC--CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEE
Q 015198 43 DEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 43 h~~~V~~l~~s~~g--~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~v 118 (411)
....+.|+++.-+. ..+++|. +|.|.+-........-.....++...+.+++|.+ |...|+.| -|....+..+.|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~I 133 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKI 133 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcccCCccc
Confidence 34567788776553 4677888 9999988775322211111235556677777776 34455544 333335689999
Q ss_pred EECCCC--cEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEcc-CCCce
Q 015198 119 WDDHQS--RCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSH-HSSTS 187 (411)
Q Consensus 119 wd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (411)
||+.++ .+..... ......+++|..+.+++. ....++++|++.. .....+.. ..+....+.| .+ .
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~~~--n 209 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPFSP--N 209 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCCCC--C
Confidence 998877 2222222 234556788888887777 4568999998732 22222222 1112233444 33 3
Q ss_pred EEEEecCCCCeEEEEEcCC---cceEEEecc----ccceeEEEecCCCC-EEEEEcCCCeEEEEEECC
Q 015198 188 VLACPGLQRGQVRIEHFGL---NMIKLINAH----DSHIACFTLTLDGL-LLATASTRGTLIRIFNTV 247 (411)
Q Consensus 188 ~l~~~g~~dg~i~i~~~~~---~~~~~~~~~----~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~ 247 (411)
+++ ...||.|.+|+... .++..+... ...+..++|.|... ++++...|...|+++|+.
T Consensus 210 Y~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 453 34699999988322 222222222 22488999998653 566777765559999975
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.67 Score=40.73 Aligned_cols=167 Identities=9% Similarity=-0.009 Sum_probs=89.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
..+-...|.++.|+|+.+.|.+..+.--.|-.+.+ ++.+....+ .+-...-.+.+..++.+.++-..+ +.+.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~DpE~Ieyig~n~fvi~dER~-----~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFSDPETIEYIGGNQFVIVDERD-----RALYL 154 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccCChhHeEEecCCEEEEEehhc-----ceEEE
Confidence 34555669999999998888877744334444443 343334444 222333345677788888887776 88888
Q ss_pred EECCCCcEEEE-----Ee-----e-cCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-e--eEEEeccCCC--c---c
Q 015198 119 WDDHQSRCIGE-----FA-----F-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L--LHQIETLANL--R---G 176 (411)
Q Consensus 119 wd~~~~~~~~~-----~~-----~-~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~--~~~~~~~~~~--~---~ 176 (411)
+.+.....+.. +. + +.....++|+|....+. ...-+.||...... . ++....+... . .
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 87665532221 21 2 45677899998655444 34445555543221 1 1111111111 1 1
Q ss_pred eEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE
Q 015198 177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI 212 (411)
Q Consensus 177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~ 212 (411)
+..+.+++....|.+-+.+++.+.--+..+..+..+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l 270 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL 270 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence 233444443333333354555555566666655444
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.19 E-value=0.019 Score=35.50 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=30.4
Q ss_pred ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (411)
...|..++|+|...+||.++.+|. |.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence 456899999999999999999999 999998 55543
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.10 E-value=0.02 Score=47.93 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=65.6
Q ss_pred ecCCCCeEEEEEcCC--cceEEEeccccceeE-EEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cceEEE
Q 015198 192 PGLQRGQVRIEHFGL--NMIKLINAHDSHIAC-FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSI 267 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~-l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l 267 (411)
.|..+|.|++|..+. ........-...|.+ |.-..++.+..++..+|. ||.|++.-++.+..... |. .++..+
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~ 151 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEEL 151 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCccee
Confidence 377899999976652 221111112222222 222345568889999999 99999988887766554 44 455556
Q ss_pred EeCCCCCEEEEE--eCCCcEEEEEcccccc
Q 015198 268 ALSPNVQWLAVA--SDKGTVHIFSLRVRVV 295 (411)
Q Consensus 268 ~~spdg~~l~s~--s~dg~I~vwd~~~~~~ 295 (411)
..+..+++|+.+ +.|..++.|++..-..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhhhc
Confidence 666666777777 7788888888876543
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.10 E-value=2 Score=44.02 Aligned_cols=244 Identities=14% Similarity=0.101 Sum_probs=120.9
Q ss_pred CCCCeEEEEEcCCC------CEEEEEe-CCcEEEEecCCCcceEE-eec--CCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198 43 DEIELISVSWNQDY------GCFAAGT-SCGFRIYNCEPFKETFR-RDL--KSGGFRIVEMLFRCNILALVGAGDNSQYP 112 (411)
Q Consensus 43 h~~~V~~l~~s~~g------~~la~g~-dg~i~iw~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~ 112 (411)
-+..|.|+.++|-| +++++|. +..+.+.-..+...... ..+ ..-+..++-..+-.+..+|..+..|
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd---- 604 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD---- 604 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCC----
Confidence 45689999999752 2788888 66555444333222222 212 1123334444555555566555555
Q ss_pred CCeEEEEE--CCCCcEEEEEe---ecCceeEEEEcCCe--EEEE-EcCeEEEEEcCCceeeEE-EeccCCCcceEEEccC
Q 015198 113 PTKVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHH 183 (411)
Q Consensus 113 d~~i~vwd--~~~~~~~~~~~---~~~~i~~~~~~~~~--~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~ 183 (411)
|.+.-+. ..+++.-..-+ ...++.--.|+..+ ..++ .|.-..+|.-+ +++... +... ....++.+..+
T Consensus 605 -G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~ 681 (1096)
T KOG1897|consen 605 -GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSD 681 (1096)
T ss_pred -ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-Hhhhhcccccc
Confidence 8776554 44443322211 23334333343322 2222 56655566532 333221 1111 11123444433
Q ss_pred CCceEEEEecCCCCeEEE---EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC-------------eEEEEEECC
Q 015198 184 SSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-------------TLIRIFNTV 247 (411)
Q Consensus 184 ~~~~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-------------~~I~vwd~~ 247 (411)
.-...++++ ..+.+++ +....-.++++.. ......+++.+....+++.+... ..++++|-+
T Consensus 682 a~~d~l~~~--~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 682 AYPDSLASA--NGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred cCCceEEEe--cCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 323345443 3455665 3333333444433 33446677776444444433211 027788877
Q ss_pred CCceEEEEeCCCC--CcceEEEEeCCC-CCEEEEEeC----------CCcEEEEEccccccC
Q 015198 248 DGTRLQEVRRGVD--RAEIYSIALSPN-VQWLAVASD----------KGTVHIFSLRVRVVG 296 (411)
Q Consensus 248 ~~~~~~~~~~~~~--~~~v~~l~~spd-g~~l~s~s~----------dg~I~vwd~~~~~~~ 296 (411)
+.+.+...+-... .-.|.++.|..| +.++++|+. .|.|.||.+...++.
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 7666544332111 124556668877 677887763 478888888874443
No 391
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.26 Score=40.90 Aligned_cols=103 Identities=8% Similarity=0.055 Sum_probs=64.3
Q ss_pred CCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198 56 YGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF 132 (411)
Q Consensus 56 g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~ 132 (411)
|.++.+.+ ...|++||+.+++......+.....---.+.-..+..+..+-.+ +.-..+|..+-+++..+..
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccccc
Confidence 44454444 56799999998888877776321221122333456666666544 8899999999999888887
Q ss_pred cCceeEEEEcCCeEEEEEcCe--EEEEEcCCceee
Q 015198 133 RSDVRSVKLSRDRIVVVLEHK--IYVYSFVDLKLL 165 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~~dg~--i~iwd~~~~~~~ 165 (411)
++.=..++...+. ++..||+ ++.-|.++....
T Consensus 130 ~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 130 EGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred CCcceeeecCCcc-eEeeCCceEEEecCHHHhhhc
Confidence 7777777665444 3334544 444455444333
No 392
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.03 E-value=0.17 Score=47.48 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=55.8
Q ss_pred EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC------CCcceEEEEeC-----CCC---CE
Q 015198 210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV------DRAEIYSIALS-----PNV---QW 275 (411)
Q Consensus 210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~s-----pdg---~~ 275 (411)
..+....++|++++.|.-| ++|.|..+|. +.|.|++....++.-.... ....|+++.|+ .|+ -.
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3344557899999997555 9999999999 9999998888776633211 23468888887 233 36
Q ss_pred EEEEeCCCcEEEEEcc
Q 015198 276 LAVASDKGTVHIFSLR 291 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~ 291 (411)
|++|++.|.+.+|++-
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 8899999999999986
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.99 E-value=0.83 Score=38.73 Aligned_cols=103 Identities=11% Similarity=0.164 Sum_probs=69.8
Q ss_pred eeEEEecCCCCEEEE-EcCCCeEEEEEE--CCCCc-----eEEEEeCCC--CCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 219 IACFTLTLDGLLLAT-ASTRGTLIRIFN--TVDGT-----RLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 219 i~~l~~sp~g~~l~s-~s~dg~~I~vwd--~~~~~-----~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
-+.++|+.+.+.+.. -+.+-. |.-|| ..+|. .+..++... ..-..-.++...+|.+.++.-+.++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 356888888776554 445555 87787 55553 333333210 11123345566788888888888899999
Q ss_pred EccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEc
Q 015198 289 SLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG 368 (411)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (411)
|..+|+.. .++++|......|+|.
T Consensus 239 dp~tGK~L--------------------------------------------------------~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGKIL--------------------------------------------------------LEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCCcEE--------------------------------------------------------EEEEcCCCceEEEEec
Confidence 99999865 3899999889999997
Q ss_pred cC--CEEEEEEe
Q 015198 369 SQ--NTVVIVSM 378 (411)
Q Consensus 369 ~~--~~~~~~~~ 378 (411)
.. +.+++.+.
T Consensus 263 Gkn~d~~yvT~a 274 (310)
T KOG4499|consen 263 GKNLDILYVTTA 274 (310)
T ss_pred CCCccEEEEEeh
Confidence 65 66666665
No 394
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.85 E-value=1.2 Score=39.46 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=117.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC-----CcceEEeecCC-----CCEEEEEEeccCCe------------
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-----FKETFRRDLKS-----GGFRIVEMLFRCNI------------ 99 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~------------ 99 (411)
.--.-+.|+|+|.+.+-++.. .+...+||.++ ....+...+.. .......+.|+...
T Consensus 21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred cccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 334458899999987776666 88999999972 12223333321 12233444444222
Q ss_pred EEEEecCCCCCCCCCeEEEEECCCCcE-----EEEEe--ecCc-eeEEEEcC----CeEEEE--EcCeEEEEEcCCceee
Q 015198 100 LALVGAGDNSQYPPTKVIIWDDHQSRC-----IGEFA--FRSD-VRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~-----~~~~~--~~~~-i~~~~~~~----~~~~~~--~dg~i~iwd~~~~~~~ 165 (411)
..++.++++ |+|.-|...-+.. ...+. .... -..+++.. +..+.+ ..++|.+||-. .+.+
T Consensus 101 a~Fif~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~ 174 (336)
T TIGR03118 101 SRFLFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPP 174 (336)
T ss_pred eeEEEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccc
Confidence 123444555 9999998432221 12222 1122 23445442 223333 57888888742 2221
Q ss_pred EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF 244 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw 244 (411)
..-.....+.--..++|- + +.. -.+.+++ |..+ .++++.=+.+-.-|. |-+|
T Consensus 175 ~~~g~F~DP~iPagyAPF--n--Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvF 227 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPF--N--VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVF 227 (336)
T ss_pred cCCCCccCCCCCCCCCCc--c--eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEE
Confidence 110000111011112221 1 211 1245665 4322 222222233445677 9999
Q ss_pred ECCCCceEEEEeCCCCCcceEEEEeCC------CCCEEEEEeCCCcEEEEEccccccCC
Q 015198 245 NTVDGTRLQEVRRGVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
|+ .|..++++.....-...+.|+..| .|.+|+---.||+|..||..+++-..
T Consensus 228 d~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 228 TL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred cC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 96 788888886443445677888765 46677766679999999999887553
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.40 E-value=2 Score=38.79 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=84.0
Q ss_pred CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE--ee----cCceeEEEEcCCeEEEEEcCeEEEEEc
Q 015198 86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF--AF----RSDVRSVKLSRDRIVVVLEHKIYVYSF 159 (411)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~--~~----~~~i~~~~~~~~~~~~~~dg~i~iwd~ 159 (411)
....+.++.|..+..-++.+.. +.|.. -...|+.=... .. .-...++.|..+.-+++.+..+.+...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~------g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAY------GTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETT------TEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEES
T ss_pred CCCceEEEEEecCCEEEEEecC------CEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEec
Confidence 3446677777755554444443 54422 11223221111 11 234677888777666664433444444
Q ss_pred CCceeeEEEecc-CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-EEEeccccceeEEEecCCCCEEEEEcCC
Q 015198 160 VDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTR 237 (411)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (411)
+.|+.=..+... .-+.....+...+++..+++ + ..|.|+.-...++.- .......+.+..+..+++|++++++..-
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELA-G-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETTEEEEE-E-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-c-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 444433333211 11111122222222333333 3 456666533333332 2234455778888899999988887655
Q ss_pred CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS 289 (411)
Q Consensus 238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd 289 (411)
.. ..-||--... -...... ....|..|.|.|++.+.+.+ ..|.|++=+
T Consensus 166 ~~-~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 166 NF-YSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SE-EEEE-TT-SS--EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred cE-EEEecCCCcc-ceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 54 6677642211 1122221 45689999999998876644 788787766
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.25 E-value=3.1 Score=40.29 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=68.1
Q ss_pred CCCCCCeEEEEEcCCC-----CEEEEEeCCcEEEEecCCC-----cceEEeec---CCCCEEEEEEeccCCeEEEEecCC
Q 015198 41 DVDEIELISVSWNQDY-----GCFAAGTSCGFRIYNCEPF-----KETFRRDL---KSGGFRIVEMLFRCNILALVGAGD 107 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g-----~~la~g~dg~i~iw~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~ 107 (411)
-|.-+.|..++|.|-+ .+||+-....|.||.+... +....... +.-+.-...+.|+|...+++.-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 3455679999999863 4777777999999998631 21111111 011122234668887654443222
Q ss_pred CCCCCCCeEEEEEC--CCCcEEEEEeecCceeEEEEcCCeEEEE--EcCe--EEEEEc
Q 015198 108 NSQYPPTKVIIWDD--HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHK--IYVYSF 159 (411)
Q Consensus 108 d~~~~d~~i~vwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~--i~iwd~ 159 (411)
. ..-.++++ .+.+....++..+.|.|.+|.+||..++ .+.. -++||-
T Consensus 133 ~-----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 R-----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred C-----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 1 22233443 3444555567889999999999998777 3333 467773
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.15 E-value=4.6 Score=41.59 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=103.0
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE------EEEEEecc-----------------CCeEEEEecCCCCCC
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF------RIVEMLFR-----------------CNILALVGAGDNSQY 111 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~------~~~~~~~~-----------------~~~~~l~s~~~d~~~ 111 (411)
+..|.+++ ++.|.-.|..+++++.+...+.... .+..+.+. .+..+++ +..|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~-~T~D--- 269 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL-PTSD--- 269 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE-ecCC---
Confidence 44566666 8888888888878777765422111 01111111 1123333 3334
Q ss_pred CCCeEEEEECCCCcEEEEEeecCcee-------------EEEEcC---CeEEEE--E----------cCeEEEEEcCCce
Q 015198 112 PPTKVIIWDDHQSRCIGEFAFRSDVR-------------SVKLSR---DRIVVV--L----------EHKIYVYSFVDLK 163 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~~~~--~----------dg~i~iwd~~~~~ 163 (411)
+.|.-.|.++|+.+..+...+.|. .+.-.| ++.+++ . +|.|+-+|.++|+
T Consensus 270 --g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 270 --ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred --CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 999999999999998765433321 011111 344444 1 5789999999999
Q ss_pred eeEEEeccCC---------Cc------ce-EEEccCCCceEEEEe-cC-----------------CCCeEEEEEcCCcce
Q 015198 164 LLHQIETLAN---------LR------GL-CCLSHHSSTSVLACP-GL-----------------QRGQVRIEHFGLNMI 209 (411)
Q Consensus 164 ~~~~~~~~~~---------~~------~~-~~~~~~~~~~~l~~~-g~-----------------~dg~i~i~~~~~~~~ 209 (411)
.+..+..... .. .. ..++.+++..+++.. |. .+..+.++..+++..
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 9988753210 00 00 122333333333221 10 111222344445555
Q ss_pred EEEeccccc---------eeEEEecC-CCC---EEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 210 KLINAHDSH---------IACFTLTL-DGL---LLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 210 ~~~~~~~~~---------i~~l~~sp-~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
-.++..... ..-+.+.. +|+ .++.++.+|. ++++|.++|+.+...
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV 485 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence 444431111 11122322 563 7889999999 999999999987654
No 398
>PRK10115 protease 2; Provisional
Probab=94.97 E-value=5 Score=41.05 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCEEEEEe--CC----cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC-CCCCeEE
Q 015198 45 IELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ-YPPTKVI 117 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-~~d~~i~ 117 (411)
-.+..+.++|||++|+.+. +| .+++.|+.++..+ ...+.. .. ..+.|.+++..++-...++. .....|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 4577789999999999876 33 3677788764322 222212 11 33666665433222221211 1336889
Q ss_pred EEECCCC--cEEEEEee-cCcee-EEEEcCCeEEEE------EcCeEEEEEcC--CceeeEEEeccCCCcceEEEccCCC
Q 015198 118 IWDDHQS--RCIGEFAF-RSDVR-SVKLSRDRIVVV------LEHKIYVYSFV--DLKLLHQIETLANLRGLCCLSHHSS 185 (411)
Q Consensus 118 vwd~~~~--~~~~~~~~-~~~i~-~~~~~~~~~~~~------~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (411)
.+++.++ +....+.. ..... .+..+.++.+++ .++.+.+++.. +++....+..... ... .+....
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~- 279 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEY-SLDHYQ- 279 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEE-EEEeCC-
Confidence 9999888 43444442 22222 333444665554 46788998852 3332222222222 122 222112
Q ss_pred ceEEEEecCCCCeEEE--EEcC-CcceEEEecc-c-cceeEEEecCCCCEEEEEcCCCe-EEEEEECCCCceEEEEeCCC
Q 015198 186 TSVLACPGLQRGQVRI--EHFG-LNMIKLINAH-D-SHIACFTLTLDGLLLATASTRGT-LIRIFNTVDGTRLQEVRRGV 259 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i--~~~~-~~~~~~~~~~-~-~~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~~~~~~~~~~~~~~ 259 (411)
..+.+.+.......+| .+.. ......+..+ . ..|..+.+. .+.++++...++. .+++++..+ ..+..+...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~- 356 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIAFD- 356 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEecCC-
Confidence 2333333211122233 2222 1222344444 2 367777776 3345555555665 144445433 334444311
Q ss_pred CCcceEEEEeC--CCCC-EEEEEeC---CCcEEEEEccccc
Q 015198 260 DRAEIYSIALS--PNVQ-WLAVASD---KGTVHIFSLRVRV 294 (411)
Q Consensus 260 ~~~~v~~l~~s--pdg~-~l~s~s~---dg~I~vwd~~~~~ 294 (411)
....+..+.++ +++. ++++.+. -+.++.+|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 22233334454 4443 4444333 3568888887754
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.91 Score=46.77 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-e
Q 015198 55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-F 132 (411)
Q Consensus 55 ~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~ 132 (411)
.+..+++|+ .|.+...|+...-..+... .....++.+++|+.++..++.|-.+ |.|.+||+..++.++.+. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n-e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQN-ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcC-CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeeeec
Confidence 355678888 7888877776421111221 2456678899999999999988776 999999999999998887 5
Q ss_pred cCceeEE---EEcCCeE-EEEEcCeEEEEEc
Q 015198 133 RSDVRSV---KLSRDRI-VVVLEHKIYVYSF 159 (411)
Q Consensus 133 ~~~i~~~---~~~~~~~-~~~~dg~i~iwd~ 159 (411)
..+..++ .+..++. .+..|..=.+|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 5444443 3334444 3334444346655
No 400
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=2 Score=35.85 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=89.0
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-CceeE--EEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCC
Q 015198 99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRS--VKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN 173 (411)
Q Consensus 99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~~i~~--~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 173 (411)
+.++.+.+.. ....|++||+.+|+.+...... ..+.. +.-..+..+.. .++.-..+|.++.+.+..+.-..
T Consensus 56 g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G- 131 (262)
T COG3823 56 GHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG- 131 (262)
T ss_pred CEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-
Confidence 3555555442 3478999999999988776532 22221 22223444444 78999999998888877664333
Q ss_pred CcceEEEccCCCceEEEEecCCCCeEEE-E--EcCCcceEEEe--ccccc---eeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198 174 LRGLCCLSHHSSTSVLACPGLQRGQVRI-E--HFGLNMIKLIN--AHDSH---IACFTLTLDGLLLATASTRGTLIRIFN 245 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~--~~~~~~~~~~~--~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd 245 (411)
.-..+..+.++ |+.+ ||+-.+ | ..+......+. ....+ ++.+.| -+|.+.|=.-.+.. |...|
T Consensus 132 --eGWgLt~d~~~--Lims---dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~-I~rI~ 202 (262)
T COG3823 132 --EGWGLTSDDKN--LIMS---DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTR-IARID 202 (262)
T ss_pred --cceeeecCCcc--eEee---CCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecc-eEEEc
Confidence 23455555543 4442 344333 1 11111111111 11112 223333 25555554444444 55566
Q ss_pred CCCCceEEEEeC----------CCCCcceEEEEeCCCCC-EEEEE
Q 015198 246 TVDGTRLQEVRR----------GVDRAEIYSIALSPNVQ-WLAVA 279 (411)
Q Consensus 246 ~~~~~~~~~~~~----------~~~~~~v~~l~~spdg~-~l~s~ 279 (411)
..+|+.+..+.. ..+....+.|++.|++. ++++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 667766554432 11344678899999874 55554
No 401
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.55 Score=44.32 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCeEEEEE----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC------ceEEEEecCCCCeEEEEEc-CCcceEE
Q 015198 143 RDRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------TSVLACPGLQRGQVRIEHF-GLNMIKL 211 (411)
Q Consensus 143 ~~~~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~g~~dg~i~i~~~-~~~~~~~ 211 (411)
.+..++.. ...++-.|++.|+.+..+..+.. .++.+.|..+ .+.|+ .-+..+..+|+.+ ++..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--vvVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--VVVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCc--ceeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 34445553 34678888999999999988776 3566655432 12232 2235556666443 2322222
Q ss_pred Eec----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE-EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198 212 INA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVH 286 (411)
Q Consensus 212 ~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~ 286 (411)
... ......+..-..+ -++|+++..|. |++||- -|....+ +.+ ....|..+..+.+|++|++.+. ..+.
T Consensus 554 ~esKdY~tKn~Fss~~tTes-GyIa~as~kGD-irLyDR-ig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTES-GYIAAASRKGD-IRLYDR-IGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred eeehhccccccccccccccC-ceEEEecCCCc-eeeehh-hcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence 211 1122223322233 48999999999 999994 4443333 333 4557999999999998876654 4588
Q ss_pred EEEcccc
Q 015198 287 IFSLRVR 293 (411)
Q Consensus 287 vwd~~~~ 293 (411)
+-|+.-.
T Consensus 628 L~d~~ik 634 (776)
T COG5167 628 LTDVPIK 634 (776)
T ss_pred EEecccc
Confidence 8887654
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.77 E-value=1.4 Score=43.60 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=66.0
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEe--ccccceeEEEec--CCCCEEEEEcCCCeEEEEEECC---------CCceEEEE
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLT--LDGLLLATASTRGTLIRIFNTV---------DGTRLQEV 255 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~s--p~g~~l~s~s~dg~~I~vwd~~---------~~~~~~~~ 255 (411)
++...+....+.||+.....+..-. ...+.|..+.|. |+|+.+.+.+-... |.+|--. +...+..+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEE
Confidence 3334445668888998876543333 347889999986 78998888888888 8888421 12344444
Q ss_pred eCCCCC-cceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 256 RRGVDR-AEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 256 ~~~~~~-~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
....+. .+|.+..|.++|.+++.+ .+.+.|++-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 322233 589999999999766544 3458888643
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.64 E-value=4.1 Score=38.55 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=83.4
Q ss_pred CeEEEEecCCCCCCCCCeEEEEECCCCc-----EEEEEeecCceeEEEEcC-----CeEEEE--EcCeEEEEEcC--Cce
Q 015198 98 NILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-----DRIVVV--LEHKIYVYSFV--DLK 163 (411)
Q Consensus 98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~-----~~~~~~--~dg~i~iwd~~--~~~ 163 (411)
+...++.|+.. |.++||+...+. .+.+.+.+.+|..+..-+ +...++ .-..+.+|.+. .|.
T Consensus 36 ~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 34556666666 999999975543 445555788888887542 233343 67888888872 111
Q ss_pred -------eeEEEeccCCCc---ceEEEccCC-CceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE
Q 015198 164 -------LLHQIETLANLR---GLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA 232 (411)
Q Consensus 164 -------~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~ 232 (411)
.+..+..|.-.. ..+.-.+.+ .+.-+++.-+.||.+.+++.+.-....+...---...+.|.+.-..|+
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence 222233332221 222222222 223444556799999998877655443332222223467778888888
Q ss_pred EEcCCCeEEEEEEC
Q 015198 233 TASTRGTLIRIFNT 246 (411)
Q Consensus 233 s~s~dg~~I~vwd~ 246 (411)
+++.... +.-|..
T Consensus 191 t~sss~~-l~~Yky 203 (418)
T PF14727_consen 191 TASSSWT-LECYKY 203 (418)
T ss_pred EecCcee-EEEecH
Confidence 8888877 887764
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.2 Score=41.33 Aligned_cols=211 Identities=14% Similarity=0.078 Sum_probs=108.5
Q ss_pred EEEcCCCCEEEEEe-C----------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198 50 VSWNQDYGCFAAGT-S----------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII 118 (411)
Q Consensus 50 l~~s~~g~~la~g~-d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v 118 (411)
++..|-|.-+|+.- + -.|+||+... ..+...+ -.+..++.|-|+.+..+++...+ |++.+
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG--~lL~~~~-w~~~~lI~mgWs~~eeLI~v~k~------g~v~V 108 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG--QLLGRIL-WKHGELIGMGWSDDEELICVQKD------GTVHV 108 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEeccc--cchHHHH-hcCCCeeeecccCCceEEEEecc------ceEEE
Confidence 44455555555554 2 2366776653 2222222 22337889999988777666443 99999
Q ss_pred EECCCCcEEEEEe-----ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCC---ceE
Q 015198 119 WDDHQSRCIGEFA-----FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSS---TSV 188 (411)
Q Consensus 119 wd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~ 188 (411)
|++. |+.+.... ....|..+.+..+|..+. .+|.+.+-.-.....+..+.. +.......+|....+ ...
T Consensus 109 y~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 109 YGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred eecc-hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 9953 33333311 234566666666777766 666666554222222223322 111111122222221 111
Q ss_pred EEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198 189 LACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI 267 (411)
Q Consensus 189 l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l 267 (411)
++-..-..+.... -.........+......+..+.+||++++|+--...|. |.+-+....+.+.++....+. +...+
T Consensus 188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~qm 265 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQM 265 (829)
T ss_pred EEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHhc
Confidence 1111100000000 00111112222223456778899999999999999999 999888877777777654232 22355
Q ss_pred EeCCC
Q 015198 268 ALSPN 272 (411)
Q Consensus 268 ~~spd 272 (411)
+|..+
T Consensus 266 ~Wcgn 270 (829)
T KOG2280|consen 266 AWCGN 270 (829)
T ss_pred eeecC
Confidence 55443
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.39 E-value=4.1 Score=37.49 Aligned_cols=234 Identities=12% Similarity=0.010 Sum_probs=113.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee----cCCCCEEEEEEeccCC----e-EEEEecCCCCCC--CCC
Q 015198 46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD----LKSGGFRIVEMLFRCN----I-LALVGAGDNSQY--PPT 114 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-~~l~s~~~d~~~--~d~ 114 (411)
.-++|+|.|||++|++-..|.|++++.+......... ..........++++|+ + .+++....+... ...
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 3578999999988776559999999933222111111 1245566788888883 3 344333110000 112
Q ss_pred eEEEEECCCC-------cEEE-EEee----cCceeEEEEcCCeEEEE--E--------------cCeEEEEEcCCce---
Q 015198 115 KVIIWDDHQS-------RCIG-EFAF----RSDVRSVKLSRDRIVVV--L--------------EHKIYVYSFVDLK--- 163 (411)
Q Consensus 115 ~i~vwd~~~~-------~~~~-~~~~----~~~i~~~~~~~~~~~~~--~--------------dg~i~iwd~~~~~--- 163 (411)
.|.-|....+ +.+. .+.. ...-..|.|.||+.+.+ . .|.|.-.+.. ++
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCC
Confidence 3443443333 1111 1111 34556799999997776 1 1333333321 11
Q ss_pred ----------eeEEE-eccCCCcceEEEccCCC-ceEEEEecCCCCeEEE-EEcCC------------------------
Q 015198 164 ----------LLHQI-ETLANLRGLCCLSHHSS-TSVLACPGLQRGQVRI-EHFGL------------------------ 206 (411)
Q Consensus 164 ----------~~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~g~~dg~i~i-~~~~~------------------------ 206 (411)
....+ .+.. ....+++++. +.+.+.--+.++.=.| ....+
T Consensus 162 dnP~~~~~~~~~~i~A~GlR---N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR---NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S---EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEEEEeCCC---ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 01111 1111 3445666666 5555443223332233 11111
Q ss_pred -----cceEEEeccccceeEEEecC-------CCCEEEEEcCCCeEEEEEECCCCceEE---EEeCCCCCcceEEEEeCC
Q 015198 207 -----NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQ---EVRRGVDRAEIYSIALSP 271 (411)
Q Consensus 207 -----~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~---~~~~~~~~~~v~~l~~sp 271 (411)
.++..+.. ...+..+.|.. .|.+|++.-..+. |....+..+..+. .+.. .....+..+++.|
T Consensus 239 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~~p 315 (331)
T PF07995_consen 239 CPGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQGP 315 (331)
T ss_dssp -TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECT-TSSS-EEEEEEET
T ss_pred CCCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccc-cCCCCceEEEEcC
Confidence 11222333 34555666653 4556666665666 8877776553322 2222 1334799999999
Q ss_pred CCCEEEEEeCCCcEE
Q 015198 272 NVQWLAVASDKGTVH 286 (411)
Q Consensus 272 dg~~l~s~s~dg~I~ 286 (411)
||.++++...+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888888774
No 406
>PHA02713 hypothetical protein; Provisional
Probab=94.29 E-value=6.3 Score=39.22 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=38.4
Q ss_pred CCCEEEEEcCC------CeEEEEEECCC-Cce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC--cEEEEEccccc
Q 015198 227 DGLLLATASTR------GTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVRV 294 (411)
Q Consensus 227 ~g~~l~s~s~d------g~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~ 294 (411)
+|++.+.|+.+ .. +..||..+ .+- +..+.. .......+.+ +|++.++|+.++ .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56777777654 23 67899876 432 222222 2222222333 678888999888 67788877765
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=3.6 Score=36.33 Aligned_cols=230 Identities=11% Similarity=0.097 Sum_probs=123.3
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~ 127 (411)
.-.+|-+.+............+|..+-.-.+....+.+....+.++.|+|+...|.+.... ..-.||=..+|+.+
T Consensus 46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~Gdli 120 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLI 120 (316)
T ss_pred eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCC-----CceEEEEecCCceE
Confidence 3344444444333322222455554432222222233445568889999988776665554 55556666889999
Q ss_pred EEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-----EE--eccCC-CcceEEEccCCCceEEEEecC
Q 015198 128 GEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-----QI--ETLAN-LRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 128 ~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-----~~--~~~~~-~~~~~~~~~~~~~~~l~~~g~ 194 (411)
.++. .-.....+.+..++++++ .+..++++.+.....+. .+ ..... ....-.+++++....+.++ -
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-K 199 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-K 199 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-E
Confidence 9987 455667788888999888 67888888775442211 11 11111 2345566777766555543 2
Q ss_pred CCCeEEEEEcCCcc----eEEEecc-------ccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEe--CCCC
Q 015198 195 QRGQVRIEHFGLNM----IKLINAH-------DSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVR--RGVD 260 (411)
Q Consensus 195 ~dg~i~i~~~~~~~----~~~~~~~-------~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~--~~~~ 260 (411)
+..-+.|+..+... +.....+ -..|.++.|++. +.+|+-+.+++. +.-.|. .|+.+..+. .+.|
T Consensus 200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~lsL~~g~~ 277 (316)
T COG3204 200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLSLTKGNH 277 (316)
T ss_pred ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEEeccCCC
Confidence 44445554333211 1111111 234667788864 556666677776 777775 555444332 2211
Q ss_pred C-----cceEEEEeCCCCCEEEEEeCCCcEE
Q 015198 261 R-----AEIYSIALSPNVQWLAVASDKGTVH 286 (411)
Q Consensus 261 ~-----~~v~~l~~spdg~~l~s~s~dg~I~ 286 (411)
. ...-.++..++|.+. ..|+-+-.+
T Consensus 278 gL~~dipqaEGiamDd~g~lY-IvSEPnlfy 307 (316)
T COG3204 278 GLSSDIPQAEGIAMDDDGNLY-IVSEPNLFY 307 (316)
T ss_pred CCcccCCCcceeEECCCCCEE-EEecCCcce
Confidence 1 123456666666533 334444333
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.18 E-value=3.1 Score=41.41 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC--CCCCEEEEEeCCCcEEEEEcc
Q 015198 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS--PNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~I~vwd~~ 291 (411)
....-+.-+.-++ ++....++..+.|||.+.+....+-.- ...+.|.++.|. |||+.+++.+-.+.|.+|--.
T Consensus 30 ~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444454555444 444455555599999988875443331 145689999987 799999999999999998543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.69 Score=47.91 Aligned_cols=143 Identities=9% Similarity=0.051 Sum_probs=85.0
Q ss_pred cCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeE-----EEe----ccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198 133 RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLH-----QIE----TLANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
.-.|..+...+|....+ .+..|+.||+++...-. -+. .....+...++.|+|.-....+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566666677754443 34578999986432111 111 11223344455555543333333457888
Q ss_pred EEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC--CCcceEEEEeCCCCC
Q 015198 199 VRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--DRAEIYSIALSPNVQ 274 (411)
Q Consensus 199 i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--~~~~v~~l~~spdg~ 274 (411)
|++..... ..+..+ .-....++++|+|.|+.+++|-..|+ +.-|. .+++....+.+.. ....|.+|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEeccee
Confidence 88743332 222221 23456789999999999999999999 88885 4666555554421 235799999988777
Q ss_pred EEEE
Q 015198 275 WLAV 278 (411)
Q Consensus 275 ~l~s 278 (411)
+|++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 7664
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.05 E-value=3.5 Score=41.44 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred CCceEEEEecCCCCeEEEEEcCC---------------------cceEEEeccccceeEEEec--CCCCEEEEEcCCCeE
Q 015198 184 SSTSVLACPGLQRGQVRIEHFGL---------------------NMIKLINAHDSHIACFTLT--LDGLLLATASTRGTL 240 (411)
Q Consensus 184 ~~~~~l~~~g~~dg~i~i~~~~~---------------------~~~~~~~~~~~~i~~l~~s--p~g~~l~s~s~dg~~ 240 (411)
+....|++ +.+||.|.+|.... ++...+. -....+.++++ ...++||+++....
T Consensus 112 g~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~- 188 (717)
T PF08728_consen 112 GGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE- 188 (717)
T ss_pred CCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-
Confidence 33445544 56899999985421 0111111 24467889998 77888888888887
Q ss_pred EEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCC-----C-EEEEEeCCCcEEEEEcc
Q 015198 241 IRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNV-----Q-WLAVASDKGTVHIFSLR 291 (411)
Q Consensus 241 I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg-----~-~l~s~s~dg~I~vwd~~ 291 (411)
|.||-..... .........+...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8888654321 11111121245578899997643 2 78889999999998883
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.90 E-value=4.2 Score=35.78 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=68.3
Q ss_pred EEEccCCCceEEEEec--CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE-CCCCceE-E
Q 015198 178 CCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN-TVDGTRL-Q 253 (411)
Q Consensus 178 ~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd-~~~~~~~-~ 253 (411)
...+.++++..+++.. .....+++..........+. ...+....|++++...+....+.. .+++. ..+++.. .
T Consensus 27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGEPV 103 (253)
T ss_pred cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcceeE
Confidence 3344444555565544 33344555544444333333 337788899999887777666666 66663 3344332 2
Q ss_pred EEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEcccccc
Q 015198 254 EVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRVV 295 (411)
Q Consensus 254 ~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~ 295 (411)
.+........|..+.+||||..+|... .++.|.|=-+.....
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~ 148 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD 148 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence 233211222899999999999888766 357788887765543
No 412
>PRK10115 protease 2; Provisional
Probab=93.82 E-value=8.9 Score=39.25 Aligned_cols=202 Identities=7% Similarity=-0.017 Sum_probs=97.7
Q ss_pred CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E-c-----CeEEEE
Q 015198 87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L-E-----HKIYVY 157 (411)
Q Consensus 87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~-d-----g~i~iw 157 (411)
...+..+.++|++..++-+.+........|++.|+.+|+.+...-.... ..+.|.+|+..++ . + ..|+.+
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3455567788888766654332111235799999988864322211111 4589998876555 2 2 368888
Q ss_pred EcCCc--eeeEEEeccCCCcceEEEcc-CCCceEEEEecCCCCeEEEEEc---CCcceEEEeccccceeEEEecCCCCEE
Q 015198 158 SFVDL--KLLHQIETLANLRGLCCLSH-HSSTSVLACPGLQRGQVRIEHF---GLNMIKLINAHDSHIACFTLTLDGLLL 231 (411)
Q Consensus 158 d~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~dg~i~i~~~---~~~~~~~~~~~~~~i~~l~~sp~g~~l 231 (411)
++.++ +....+........+..... +....++.+....++.+.+++. .+.....+.........+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 98877 33334443333333222222 2222233333334456776552 2222222222222222222 3333333
Q ss_pred EEEcCCC-e-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 232 ATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 232 ~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+....++ . .|...++........+........|..+.+.. +.++++...+|.-+++-++
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEc
Confidence 3333222 2 14444554212223343321233688888873 3556666667765555444
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.79 E-value=0.37 Score=41.32 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=50.4
Q ss_pred eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS 348 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (411)
+..++.+|++.+.+|.+++||+.+++..-. +.+....+. +.. .+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------------------------------~~Si~pll~---~~~-~~ 61 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------------------------------PVSIAPLLN---SSP-VS 61 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------------------------------CccHHHHhc---ccc-cc
Confidence 445788999999999999999999886421 111111110 000 00
Q ss_pred ccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198 349 EWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 389 (411)
+. .+...+..+..+.++..++.-++|..|.|+.+.
T Consensus 62 ~~------~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 62 DK------SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred cC------CCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 00 223445567777778888888899999998775
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.66 E-value=0.25 Score=29.60 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.1
Q ss_pred ceEEEEeCCCC---CEEEEEeCCCcEEEEEcccc
Q 015198 263 EIYSIALSPNV---QWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 263 ~v~~l~~spdg---~~l~s~s~dg~I~vwd~~~~ 293 (411)
.|.++.|+|+. .+|+.+-..|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 58899999854 48888888899999999964
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.62 E-value=0.13 Score=51.49 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=95.6
Q ss_pred CeEEEEECCCCcEEEEE-e-ecCceeEEEEcCCe-EEE-EEcCeEEEEEcC--CceeeEEEec-----cCCCcceEEEcc
Q 015198 114 TKVIIWDDHQSRCIGEF-A-FRSDVRSVKLSRDR-IVV-VLEHKIYVYSFV--DLKLLHQIET-----LANLRGLCCLSH 182 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~-~-~~~~i~~~~~~~~~-~~~-~~dg~i~iwd~~--~~~~~~~~~~-----~~~~~~~~~~~~ 182 (411)
+.+++-+....-...++ + +.+.+..+.|-... ..+ ..-|.+.+||+. .|+....+.. ...+...+.+.+
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP 190 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecc
Confidence 55666654332211111 2 56777777775321 111 145777888873 3444333321 122223333333
Q ss_pred C-CCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEE-----------ecCCCCEEEEEcCCCeEEEEEECC---
Q 015198 183 H-SSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT-----------LTLDGLLLATASTRGTLIRIFNTV--- 247 (411)
Q Consensus 183 ~-~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~-----------~sp~g~~l~s~s~dg~~I~vwd~~--- 247 (411)
- .+..++ +.+..++.|++-.++......+.+|...+..++ ++|||..++++..||. +++|.+.
T Consensus 191 ~~~~~~~i-c~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g 268 (1283)
T KOG1916|consen 191 IAVNKVYI-CYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITG 268 (1283)
T ss_pred ccccccee-eeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeec
Confidence 2 222344 447788899983333333344455766555443 5899999999999998 8888653
Q ss_pred --CCceEEEEeCCCCC-c-ceEEEEeCCC-------C--CEEEEEeCC-CcEEEEEccccccC
Q 015198 248 --DGTRLQEVRRGVDR-A-EIYSIALSPN-------V--QWLAVASDK-GTVHIFSLRVRVVG 296 (411)
Q Consensus 248 --~~~~~~~~~~~~~~-~-~v~~l~~spd-------g--~~l~s~s~d-g~I~vwd~~~~~~~ 296 (411)
...++...+. |. . .|..+ +..+ + .++++++.- ..+++|....-+|.
T Consensus 269 ~~~~rclhewkp--hd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 269 KIVHRCLHEWKP--HDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccHhhhhccCC--CCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2234445554 33 2 23333 3322 1 244555543 45999998887766
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.57 E-value=1 Score=45.73 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=54.5
Q ss_pred ccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----------Cce--EE-EEe------CCCCCcceEEEEeCCC---C
Q 015198 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTR--LQ-EVR------RGVDRAEIYSIALSPN---V 273 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~--~~-~~~------~~~~~~~v~~l~~spd---g 273 (411)
...|..|.++|+|.+|+..|..| |.|-.+.. |+. .. ++. .......|..+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 34688899999999999998876 44544431 111 11 111 1113457899999996 4
Q ss_pred CEEEEEeCCCcEEEEEcccccc
Q 015198 274 QWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 274 ~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
..|++-+.|+++++||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 7899999999999999976543
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.54 E-value=0.43 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.0
Q ss_pred cceeEEEecCCC---CEEEEEcCCCeEEEEEECCCC
Q 015198 217 SHIACFTLTLDG---LLLATASTRGTLIRIFNTVDG 249 (411)
Q Consensus 217 ~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~ 249 (411)
+.|.++.|+|+. .+|+.+-..+. |.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence 468899999754 48888888888 999999853
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.52 E-value=4.9 Score=35.34 Aligned_cols=159 Identities=14% Similarity=0.068 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE-CC
Q 015198 46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-DH 122 (411)
Q Consensus 46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd-~~ 122 (411)
.+.+.+++++++.+|... ++.-.||-.......... + ....+....|++++.+.+....+ ...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCC-----CceEEEEecC
Confidence 688999999999887655 666566655543332222 1 22266777788876655554443 5555553 33
Q ss_pred CCcEE-EEEe---ecCceeEEEEcCCeEEEE--E----cCeEEEEEcC---Cc---eeeEEEecc-CCCcceEEEccCCC
Q 015198 123 QSRCI-GEFA---FRSDVRSVKLSRDRIVVV--L----EHKIYVYSFV---DL---KLLHQIETL-ANLRGLCCLSHHSS 185 (411)
Q Consensus 123 ~~~~~-~~~~---~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~---~~---~~~~~~~~~-~~~~~~~~~~~~~~ 185 (411)
+++.. ..+. ....|.++.++|||..++ . ++.|++--+. .+ .....+... .....+..+.|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 44332 2222 122899999999998887 3 6788877652 23 111111111 11224567788888
Q ss_pred ceEEEEecCCCCeEEE-EEcCCcceEEE
Q 015198 186 TSVLACPGLQRGQVRI-EHFGLNMIKLI 212 (411)
Q Consensus 186 ~~~l~~~g~~dg~i~i-~~~~~~~~~~~ 212 (411)
..+++.....++.+.. ....+.....+
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCccccc
Confidence 7777766555554443 33444433333
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.50 E-value=8.9 Score=38.24 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred eEEEEecCCCC-CCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--Ec------CeEEEEEcCCceeeEE
Q 015198 99 ILALVGAGDNS-QYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQ 167 (411)
Q Consensus 99 ~~~l~s~~~d~-~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d------g~i~iwd~~~~~~~~~ 167 (411)
+.+++.|+..+ ...-..+..+|..+++...... ....-.++++..+..+++ .| ..+..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 44445555442 2223678899988875443332 444556667777766666 44 457888887665332
Q ss_pred EeccCCCcceEEEccCCCceEEEEecCCCCeEEE-----EEcCCcceEEEeccccceeEEE-ecCCCCEEEEEcCCCe--
Q 015198 168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGLNMIKLINAHDSHIACFT-LTLDGLLLATASTRGT-- 239 (411)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-----~~~~~~~~~~~~~~~~~i~~l~-~sp~g~~l~s~s~dg~-- 239 (411)
+..-..+.....++.- ++.+ .+.|+.||.-.+ |+.....-.............. ..-+|++.++|+.++.
T Consensus 364 ~a~M~~~R~~~~v~~l-~g~i-YavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVL-DGKL-YAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCCccCccccceeEEE-CCEE-EEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 1111111111222222 2233 344667765443 4433322222111111111111 1237888888886653
Q ss_pred ---EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc-----EEEEEcccc
Q 015198 240 ---LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT-----VHIFSLRVR 293 (411)
Q Consensus 240 ---~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~-----I~vwd~~~~ 293 (411)
.+..||..+++-...-......... .++ .-++.+.+.|+.|+. |..||..+.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence 2778888776533211111011111 122 236677888887773 455555544
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.35 E-value=7.2 Score=36.73 Aligned_cols=192 Identities=10% Similarity=0.042 Sum_probs=85.3
Q ss_pred eEEEEecCCCCCCCCCeEEEEECCC----CcEEEEEee----c----CceeEEEEcCCeEEEE---------EcCeEEEE
Q 015198 99 ILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFAF----R----SDVRSVKLSRDRIVVV---------LEHKIYVY 157 (411)
Q Consensus 99 ~~~l~s~~~d~~~~d~~i~vwd~~~----~~~~~~~~~----~----~~i~~~~~~~~~~~~~---------~dg~i~iw 157 (411)
..+++-+-.. +.|.|.|+.+ -+..+.+.. . ..-..+..-|+|.+++ .-|.+.++
T Consensus 88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 3455555454 8999999774 344455541 1 2233444567885555 13568888
Q ss_pred EcCCceeeEEEeccCC-CcceEEEccCCCceEEEEec-------------------CCCCeEEEEEcCCcc-eEEEeccc
Q 015198 158 SFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPG-------------------LQRGQVRIEHFGLNM-IKLINAHD 216 (411)
Q Consensus 158 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-------------------~~dg~i~i~~~~~~~-~~~~~~~~ 216 (411)
|-++.+.....+.... ......+-+.+....++++. .....+.+|++..+. ++.+.--.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 8888887777755332 12233444455555565532 135688899988755 44444322
Q ss_pred --cceeEEEec--CCCCEEEEEc-CCCeEEEEEEC-CCCc----eEEEEeCCC--------C-------CcceEEEEeCC
Q 015198 217 --SHIACFTLT--LDGLLLATAS-TRGTLIRIFNT-VDGT----RLQEVRRGV--------D-------RAEIYSIALSP 271 (411)
Q Consensus 217 --~~i~~l~~s--p~g~~l~s~s-~dg~~I~vwd~-~~~~----~~~~~~~~~--------~-------~~~v~~l~~sp 271 (411)
.....|.|. |+..+=+++. -..+ |..|-- ..++ .+..+.... - ..-|+.|.+|.
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 234456665 4444433333 3344 555532 3442 222332210 0 23579999999
Q ss_pred CCCEEEEEe-CCCcEEEEEccccccC
Q 015198 272 NVQWLAVAS-DKGTVHIFSLRVRVVG 296 (411)
Q Consensus 272 dg~~l~s~s-~dg~I~vwd~~~~~~~ 296 (411)
|.++|..++ .+|.|+.||+......
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCC
Confidence 999987655 6899999999987654
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=92.91 E-value=7.6 Score=35.79 Aligned_cols=233 Identities=14% Similarity=0.093 Sum_probs=109.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecC---CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198 44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120 (411)
Q Consensus 44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd 120 (411)
...+++|.|..+..-+++|.++. ||......+.+..... .....+..+.+.++..+++ +.. +.|..-+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~-G~~------g~i~~S~ 115 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRT--LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIV-GQP------SLLLHTT 115 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCE--EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEe-CCC------ceEEEEC
Confidence 55789999987777788887664 4544444444443211 1123345565655443333 322 4333222
Q ss_pred CCCCcEEEEEe----ecCc-eeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 121 DHQSRCIGEFA----FRSD-VRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 121 ~~~~~~~~~~~----~~~~-i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
..|+.-..+. .... .....+.++..+++ ..|.|..=+ +.|+.=..+.... ......+...+++.++++ |
T Consensus 116 -DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~-g- 190 (334)
T PRK13684 116 -DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDA-AGVVRNLRRSPDGKYVAV-S- 190 (334)
T ss_pred -CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCC-cceEEEEEECCCCeEEEE-e-
Confidence 2222222211 1111 11222233322333 333332221 1222211111111 123445555666666554 4
Q ss_pred CCCeEEE-EEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC--CCCcceEEEEeC
Q 015198 195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS 270 (411)
Q Consensus 195 ~dg~i~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s 270 (411)
..|.+.. ++..++.-... ..-...++.+.+.++++.++++ ..|. +++=....|..-...... .....+..+.+.
T Consensus 191 ~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 191 SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLESWSKPIIPEITNGYGYLDLAYR 268 (334)
T ss_pred CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCccccccCCccccccceeeEEEc
Confidence 5666665 23332322222 2335678899999999877665 4565 543233444432222211 012357889999
Q ss_pred CCCCEEEEEeCCCcEEEEEccccc
Q 015198 271 PNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 271 pdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
+++..++ ++.+|.|. ...+.++
T Consensus 269 ~~~~~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 269 TPGEIWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred CCCCEEE-EcCCCeEE-EeCCCCC
Confidence 9877554 55677444 4444444
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.87 E-value=0.8 Score=39.27 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=50.6
Q ss_pred ecCCCCEEEEEcCCCeEEEEEECCCCceEEEE------eCC------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV------RRG------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~------~~~------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
+..++.+|++-+.+|. +++||+.+++.+..- -.. .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999 999999988754322 110 1345788999999998877765 4778999876
Q ss_pred cc
Q 015198 292 VR 293 (411)
Q Consensus 292 ~~ 293 (411)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 55
No 423
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.78 E-value=8.3 Score=35.90 Aligned_cols=187 Identities=10% Similarity=0.099 Sum_probs=100.1
Q ss_pred CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEE------EcCCeEEEE----E-c--CeEEEEEcC--C
Q 015198 97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVK------LSRDRIVVV----L-E--HKIYVYSFV--D 161 (411)
Q Consensus 97 ~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~----~-d--g~i~iwd~~--~ 161 (411)
|...++++.... +-+.+||+ .|+.++.+. .+.++.+. +.....-++ . + ..|++|.+. +
T Consensus 66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 344455555554 88999995 566666664 22333333 322221122 2 2 468999774 3
Q ss_pred ceeeEEEec-------cCCCcceEEEccC-CCceEEEEecCCCCeEEEEEcC----C----cceEEEeccccceeEEEec
Q 015198 162 LKLLHQIET-------LANLRGLCCLSHH-SSTSVLACPGLQRGQVRIEHFG----L----NMIKLINAHDSHIACFTLT 225 (411)
Q Consensus 162 ~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~l~~~g~~dg~i~i~~~~----~----~~~~~~~~~~~~i~~l~~s 225 (411)
+. +..+.. ......-+|+-.+ .++.+.++....+|.+..|... + +.++.|.. ...+..+...
T Consensus 139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD 216 (381)
T PF02333_consen 139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD 216 (381)
T ss_dssp TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence 43 333321 1112234555444 3455556666688887764432 2 34566654 3467888888
Q ss_pred CCCCEEEEEcCCCeEEEEEECCCC-----ceEEEEeCCCCCcceEEEEeC--CCCC--EEEEEeCCCcEEEEEcccc
Q 015198 226 LDGLLLATASTRGTLIRIFNTVDG-----TRLQEVRRGVDRAEIYSIALS--PNVQ--WLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~~~~~~~v~~l~~s--pdg~--~l~s~s~dg~I~vwd~~~~ 293 (411)
.....|+.+-++.. |+-|+.+.. +.+....+......|-.|++- .+++ +|++.-.+++..||+.+..
T Consensus 217 De~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 217 DETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88889999999998 888887522 222222232244577778775 3433 4455556778999998864
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.61 E-value=7.8 Score=36.27 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=72.5
Q ss_pred CceeEEEEcCCeEEEEEc---------------CeEEEEEcCC--cee--eEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198 134 SDVRSVKLSRDRIVVVLE---------------HKIYVYSFVD--LKL--LHQIETLANLRGLCCLSHHSSTSVLACPGL 194 (411)
Q Consensus 134 ~~i~~~~~~~~~~~~~~d---------------g~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 194 (411)
.....|+|.++|++.+.+ +.|.+++-.+ |+. ...+..... ....+.+.+++ ++++ .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~--~p~Gi~~~~~G-lyV~--~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS--MVTGLAVAVGG-VYVA--T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC--CccceeEecCC-EEEe--C
Confidence 345677888887776621 2677776432 332 223322222 23445555566 4332 2
Q ss_pred CCCeEEEEEcCC------cceEEEe---c----cccceeEEEecCCCCEEEEEcCC-------------------CeEEE
Q 015198 195 QRGQVRIEHFGL------NMIKLIN---A----HDSHIACFTLTLDGLLLATASTR-------------------GTLIR 242 (411)
Q Consensus 195 ~dg~i~i~~~~~------~~~~~~~---~----~~~~i~~l~~sp~g~~l~s~s~d-------------------g~~I~ 242 (411)
....+++.+..+ +....+. . +......++|.|||.+.++-+.. +. |.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence 343333433322 1111112 1 23446789999999876654421 44 55
Q ss_pred EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
-+|...++. ..+.. .-.....++|+++|+++++-..+
T Consensus 168 r~~pdg~~~-e~~a~--G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKL-RVVAH--GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeE-EEEec--CcCCCccceECCCCCEEEEccCC
Confidence 566544443 23332 12345789999999987664433
No 425
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.43 E-value=0.4 Score=40.42 Aligned_cols=99 Identities=8% Similarity=0.009 Sum_probs=54.8
Q ss_pred CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-e
Q 015198 56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-F 132 (411)
Q Consensus 56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~ 132 (411)
+.-+++|+ +|.|.+|+..-......... .....+..+... .++.+..++..+ +.|+.|++.-++.+.... |
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~d-----g~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQD-----GRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh-cccccceeccccccccceeEEeccC-----CceeeeccccCceeeeeccc
Confidence 45677888 99999999874333332211 222233333333 233445555555 999999988888776655 4
Q ss_pred c-CceeEEEEcCCeEEEE-----EcCeEEEEEcC
Q 015198 133 R-SDVRSVKLSRDRIVVV-----LEHKIYVYSFV 160 (411)
Q Consensus 133 ~-~~i~~~~~~~~~~~~~-----~dg~i~iwd~~ 160 (411)
. .++..+.....+.++. .|..++.|++.
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4 3443333333333332 34555566553
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.42 E-value=4.2 Score=38.70 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=86.6
Q ss_pred ccCCe-EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe---------EEEE-EcCeEEEEEcCC-c
Q 015198 95 FRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVD-L 162 (411)
Q Consensus 95 ~~~~~-~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~dg~i~iwd~~~-~ 162 (411)
+..+. .++..++.. ..++-.|++.|+.+.+......+ -+.|.|+. .++. .+..|.-.|.+- |
T Consensus 475 h~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 475 HDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred ecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 33433 444455544 78888999999999998855555 56666642 3333 677777777643 3
Q ss_pred eeeEEEeccC--CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCe
Q 015198 163 KLLHQIETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 163 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
..+....... ......+...... .++|+ ++..|.|+++++-+ +....+.+....|..|..+.+|+++++.+.. .
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTes-GyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y 625 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTES-GYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y 625 (776)
T ss_pred CceeeeeehhccccccccccccccC-ceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e
Confidence 2222221111 0011112222222 35665 66899999977655 4445567778899999999999987766643 4
Q ss_pred EEEEEECC
Q 015198 240 LIRIFNTV 247 (411)
Q Consensus 240 ~I~vwd~~ 247 (411)
+.+-|++
T Consensus 626 -llL~d~~ 632 (776)
T COG5167 626 -LLLTDVP 632 (776)
T ss_pred -EEEEecc
Confidence 6677764
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.28 E-value=3.6 Score=39.92 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=65.6
Q ss_pred CceeEEEEcCCe-----EEEE--EcCeEEEEEcC-----CceeeEEEecc---CCCcceEEEccCCCceEEEEecCCCCe
Q 015198 134 SDVRSVKLSRDR-----IVVV--LEHKIYVYSFV-----DLKLLHQIETL---ANLRGLCCLSHHSSTSVLACPGLQRGQ 198 (411)
Q Consensus 134 ~~i~~~~~~~~~-----~~~~--~dg~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~dg~ 198 (411)
..|..+.|.|-+ .+++ ....|.+|.+. ..+.+.....+ .-++-.-...|+|+..+|++-...|-.
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 357788888752 3444 67889999983 23333222111 122222334566666677665445544
Q ss_pred EEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC
Q 015198 199 VRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (411)
Q Consensus 199 i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (411)
|.- -..+...++.--...+.|.|.+|.+||+.|+.+-...-.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 433 2223333333335678899999999999877654333237899843
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=3.7 Score=40.94 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=45.9
Q ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceE-EeecCCCCEEEEEEeccCCeEEEEecC
Q 015198 31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAG 106 (411)
Q Consensus 31 ~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~ 106 (411)
.+|+.+....-.|. .+-.+.|+.+..+|++.-+|++.+|++....... ..-+......|..+.+..+|.++.+.+
T Consensus 71 ~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 71 ISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred ccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 34444444444555 7889999999888888779999999986421111 011122333455655555776666554
No 429
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=91.64 E-value=8.5 Score=35.86 Aligned_cols=169 Identities=16% Similarity=0.204 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCC
Q 015198 114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHS 184 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 184 (411)
+.|.+.| +....+..++ ....|.++.|..|-.+++ .-.-+.+.|+.+. +.+..++.+. ...-+++-+
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG---fS~YLHpig 481 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG---FSEYLHPIG 481 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC---chhhccccC
Confidence 4566666 5566666665 478899999999988888 4556788888654 4444554433 334567777
Q ss_pred CceEEEEecCCCCeEEE--EEcCC----cceEEEec--ccc----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198 185 STSVLACPGLQRGQVRI--EHFGL----NMIKLINA--HDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL 252 (411)
Q Consensus 185 ~~~~l~~~g~~dg~i~i--~~~~~----~~~~~~~~--~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~ 252 (411)
++.+|-. |..+|.++| ++... +.+....- .-. .-.+..|+|...+++.-...+. . |+-++.|..+
T Consensus 482 en~~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g-y-if~iedg~kl 558 (603)
T COG4880 482 ENRLLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG-Y-IFFIEDGSKL 558 (603)
T ss_pred CCcEEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc-E-EEEEecCcee
Confidence 7777765 778899888 44332 11111110 001 1123445555554444333333 2 5555666433
Q ss_pred EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.. ...+...+...-|..| +|...+.. .+.++|-++-+
T Consensus 559 ~k--~~e~k~na~RA~fi~d--ylY~vg~~-ev~~ldenswe 595 (603)
T COG4880 559 RK--RAERKLNADRAFFIKD--YLYLVGGN-EVWKLDENSWE 595 (603)
T ss_pred ee--hhhhcccceeeEEecc--eEEEeccc-eeEEeccchHh
Confidence 22 2225545555555544 44443332 25555544443
No 430
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.54 E-value=14 Score=35.91 Aligned_cols=137 Identities=13% Similarity=0.040 Sum_probs=67.7
Q ss_pred cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccc---eeEEEecCC
Q 015198 151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH---IACFTLTLD 227 (411)
Q Consensus 151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~---i~~l~~sp~ 227 (411)
....+++| ..|.....+......... +...+++.+++..+ ..++..+..++.+......... =..+..-|+
T Consensus 127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC---CceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence 35566677 345665555443321111 44556677776543 6777777778766665433322 345667799
Q ss_pred CCEEEEEcC-------------CCeEEEEEECCCCceEEEEeCCCCC-------------------------cceEEEEe
Q 015198 228 GLLLATAST-------------RGTLIRIFNTVDGTRLQEVRRGVDR-------------------------AEIYSIAL 269 (411)
Q Consensus 228 g~~l~s~s~-------------dg~~I~vwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~ 269 (411)
|++|+.+.. ... |..+| .+|+.+..+....|- .-++++.+
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 998887772 122 55666 677766654321110 14788999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEcccccc
Q 015198 270 SP-NVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 270 sp-dg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.+ ++.+|+++-....|...|.++++.
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 88 555555555555677777666653
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.27 E-value=17 Score=36.28 Aligned_cols=232 Identities=14% Similarity=0.082 Sum_probs=106.6
Q ss_pred CCCCEEEEEe-C------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-CCCCCCeEEEEECCCCc
Q 015198 54 QDYGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 54 ~~g~~la~g~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~d~~i~vwd~~~~~ 125 (411)
..+.++++|+ + ..+..||..+........+ ........+....+..+ +.|+.+ ....-..+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~~~~lY-v~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVLNGKLY-VVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEECCEEE-EEccccCCCcccceEEEecCCCCc
Confidence 3455677777 5 3577888776543333333 22222333444445444 444544 23344788899987776
Q ss_pred EEEEEe--ecCceeEEEEcCCeEEEE--Ec-----CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198 126 CIGEFA--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR 196 (411)
Q Consensus 126 ~~~~~~--~~~~i~~~~~~~~~~~~~--~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 196 (411)
-...-. ....-.+++......+++ .| .+|..||..+.+-...-.... .....+...- ++.+.+ .|+.+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~-~g~iYi-~GG~~ 437 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL-GGKLYI-IGGGD 437 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE-CCEEEE-EcCcC
Confidence 443211 122222233333333444 23 347777776543221111111 1111222221 233333 35544
Q ss_pred CeE------EEEEcCCcceEEE---eccccceeEEEecCCCCEEEEEcCCCe----EEEEEECCCCceEEEEeCCCCCcc
Q 015198 197 GQV------RIEHFGLNMIKLI---NAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRAE 263 (411)
Q Consensus 197 g~i------~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~~ 263 (411)
+.- ..++.....-..+ ........ ++ .-++.+.+.|+.|+. .|..||..+.+-...-........
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 433 2333333222111 11111111 22 236778888887751 277888877664433211112222
Q ss_pred eEEEEeCCCCCEEEEEeCCC-----cEEEEEccccc
Q 015198 264 IYSIALSPNVQWLAVASDKG-----TVHIFSLRVRV 294 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~ 294 (411)
+.... -+++..++|+.|| +|..||..+.+
T Consensus 516 ~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 516 VGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 22222 2567778888886 46666655543
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=2.5 Score=39.57 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=67.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCe
Q 015198 40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTK 115 (411)
Q Consensus 40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~ 115 (411)
-...+++|.++.|++|.+.||+-. +..|.+++..+.+. ....+.+.+...+..+.|..+- ..+++. ..
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~--------~G 133 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD--------QG 133 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec--------CC
Confidence 344566999999999999999998 99999999854332 2223334556668888887653 344442 34
Q ss_pred EEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE
Q 015198 116 VIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV 149 (411)
Q Consensus 116 i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~ 149 (411)
+-+|.... .+.++..+ +...|+...|.++...+.
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 45554322 22233333 777888888988877666
No 433
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.03 E-value=1.1 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEe--C--CcEEEE
Q 015198 41 DVDEIELISVSWNQDYGCFAAGT--S--CGFRIY 70 (411)
Q Consensus 41 ~~h~~~V~~l~~s~~g~~la~g~--d--g~i~iw 70 (411)
......-....|+|||+.|+..+ + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455678999999999998776 6 666666
No 434
>PHA02713 hypothetical protein; Provisional
Probab=90.02 E-value=16 Score=36.41 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCC--eEEEEEECCCCceE
Q 015198 227 DGLLLATASTRG--TLIRIFNTVDGTRL 252 (411)
Q Consensus 227 ~g~~l~s~s~dg--~~I~vwd~~~~~~~ 252 (411)
+|++.++|+.++ . +..||..+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYML-QDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceee-hhhcCccccccc
Confidence 778888998888 6 788888776643
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.77 E-value=2.3 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCC
Q 015198 226 LDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRG 258 (411)
Q Consensus 226 p~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~ 258 (411)
|++++|+++.. ++. |.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence 57777766654 566 999999999888888764
No 436
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.67 E-value=6.1 Score=34.35 Aligned_cols=140 Identities=10% Similarity=0.030 Sum_probs=75.3
Q ss_pred CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE----E--cCeEEEEEcCC----ceeeEEEeccCCCcceEEEc
Q 015198 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----L--EHKIYVYSFVD----LKLLHQIETLANLRGLCCLS 181 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~----~--dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~ 181 (411)
-.-.+||+.+++.. .+. ...-..+-.+.+||+++. . ...+++++..+ ......-..-....+.-...
T Consensus 46 a~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 46 AHSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 34568898887653 233 222233345778998888 2 24578887643 11110000011112223333
Q ss_pred cCCCceEEEEecCCCCeEEEEEcCC--cceEE---Eec-----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198 182 HHSSTSVLACPGLQRGQVRIEHFGL--NMIKL---INA-----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR 251 (411)
Q Consensus 182 ~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~---~~~-----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~ 251 (411)
.-++|+.|++.|....+..+|.... ..... +.. ....---+...|+|++++.+..+.. |||..+.+.
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~---i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI---IYDYKTNTV 201 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE---EEeCCCCeE
Confidence 3467888888776655555554421 11111 110 1111224566799999998887654 789888877
Q ss_pred EEEEeC
Q 015198 252 LQEVRR 257 (411)
Q Consensus 252 ~~~~~~ 257 (411)
++.+..
T Consensus 202 ~~~lP~ 207 (243)
T PF07250_consen 202 VRTLPD 207 (243)
T ss_pred EeeCCC
Confidence 777664
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=5.4 Score=42.42 Aligned_cols=132 Identities=12% Similarity=0.232 Sum_probs=82.5
Q ss_pred CeEEEEECCCCcEEEEEe-ecCceeEEEEc-C-------C--eEEEE-EcCeEEEEEcC----Cce---eeEEEeccCCC
Q 015198 114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLS-R-------D--RIVVV-LEHKIYVYSFV----DLK---LLHQIETLANL 174 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~-~-------~--~~~~~-~dg~i~iwd~~----~~~---~~~~~~~~~~~ 174 (411)
+.+.+|+.+++.....+. ....|..+..- | . ..+++ .--.|.++-+. ++. ....+......
T Consensus 99 n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg 178 (1311)
T KOG1900|consen 99 NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDG 178 (1311)
T ss_pred CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCC
Confidence 899999999977777776 56666666532 2 1 11222 44455555441 111 11223444556
Q ss_pred cceEEEccCCCceEEEEecCCCCeEEE--EEcC----Cc-----------------ceEEEe-ccccceeEEEecCCCCE
Q 015198 175 RGLCCLSHHSSTSVLACPGLQRGQVRI--EHFG----LN-----------------MIKLIN-AHDSHIACFTLTLDGLL 230 (411)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~----~~-----------------~~~~~~-~~~~~i~~l~~sp~g~~ 230 (411)
+.+.++....+|+++. +| .||.|+= +... ++ .+..+. .+..+|..+++......
T Consensus 179 ~~V~~I~~t~nGRIF~-~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFF-AG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred ceEEEEEeccCCcEEE-ee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 6778888777777765 35 5665543 2211 11 112223 56789999999988889
Q ss_pred EEEEcCCCeEEEEEECCC
Q 015198 231 LATASTRGTLIRIFNTVD 248 (411)
Q Consensus 231 l~s~s~dg~~I~vwd~~~ 248 (411)
|.+-++.+. |.+||+..
T Consensus 257 lY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred eeeeccCce-EEEEEccC
Confidence 999999999 99999965
No 438
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=11 Score=40.37 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=83.6
Q ss_pred EEEEcCeEEEEEcCCceeeEEEeccCCCcceEEE-ccCC-----CceEEEEecCCCCeEEEEE----cCCcce------E
Q 015198 147 VVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL-SHHS-----STSVLACPGLQRGQVRIEH----FGLNMI------K 210 (411)
Q Consensus 147 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~l~~~g~~dg~i~i~~----~~~~~~------~ 210 (411)
++..|+.+.+|+.+++.....+.+..+.+-.+.+ .|.| .-+++.+.+ .--.|.|.- ...... .
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCcccccccce
Confidence 3348999999999987777777665554333322 2222 112222222 222333311 111111 2
Q ss_pred EEeccccceeEEEecCCCCEEEEEcCCCeEEE--EEECCCC---c-e----------------EEEEeCCCCCcceEEEE
Q 015198 211 LINAHDSHIACFTLTLDGLLLATASTRGTLIR--IFNTVDG---T-R----------------LQEVRRGVDRAEIYSIA 268 (411)
Q Consensus 211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~--vwd~~~~---~-~----------------~~~~~~~~~~~~v~~l~ 268 (411)
.+......|.++....+|+.+++|- ||. |+ +|....| + + +..+. +.+..+|..+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeE
Confidence 2334466788999888998777655 445 43 2222221 1 0 11122 23567999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 269 LSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 269 ~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
.......|.+-+..|+|.+|++...
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCC
Confidence 9888889999999999999999873
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.07 E-value=17 Score=32.73 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=87.5
Q ss_pred CeEEEEECCCCcEEEEEee-------cCceeEEEEcCC------eE-EEE--EcCeEEEEEcCCceeeEEEeccCCCc--
Q 015198 114 TKVIIWDDHQSRCIGEFAF-------RSDVRSVKLSRD------RI-VVV--LEHKIYVYSFVDLKLLHQIETLANLR-- 175 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~-------~~~i~~~~~~~~------~~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~-- 175 (411)
-+|.+||+.+++.++.+.. .+.+..+.+... +. ++. ..+.|.++|+.+++.-+.+..+..+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 5889999999999988873 345667777652 22 222 34689999999887765554322111
Q ss_pred -----------------ceEEEcc-CCCceEEEEecCCCCeE-EEE---EcCC---------cceEEEecc-ccceeEEE
Q 015198 176 -----------------GLCCLSH-HSSTSVLACPGLQRGQV-RIE---HFGL---------NMIKLINAH-DSHIACFT 223 (411)
Q Consensus 176 -----------------~~~~~~~-~~~~~~l~~~g~~dg~i-~i~---~~~~---------~~~~~~~~~-~~~i~~l~ 223 (411)
..+++.+ +++++.|.+..-....+ +|- ..+. ..++.+ +. ......++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEE
Confidence 1111211 22334444322111111 120 0010 112222 22 23566788
Q ss_pred ecCCCCEEEEEcCCCeEEEEEECCCC---ceEEEE-eCCCCCcceEEEEeCC--CCCEEEEE
Q 015198 224 LTLDGLLLATASTRGTLIRIFNTVDG---TRLQEV-RRGVDRAEIYSIALSP--NVQWLAVA 279 (411)
Q Consensus 224 ~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~-~~~~~~~~v~~l~~sp--dg~~l~s~ 279 (411)
++++|.++++--..+. |..|+..+. +....+ .....-..+..+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999998888888888 999998651 122222 2211134778899988 77655554
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.98 E-value=16 Score=37.51 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.4
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
.|..|.++|+|++|+..|..| |.|..+..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~ 114 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPR 114 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEecc
Confidence 688999999999999998877 77777743
No 441
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.94 E-value=24 Score=34.41 Aligned_cols=237 Identities=11% Similarity=0.064 Sum_probs=106.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198 42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD 121 (411)
Q Consensus 42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~ 121 (411)
....+|.++.+...|. +-+|++..+..||..+.+ .+..........|..+.-+-++...++.. .-+.+.+.
T Consensus 162 l~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gk-alql~s~~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~ 232 (671)
T COG3292 162 LKDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGK-ALQLASPPLDKAINALIADVQGRLWVGTD-------QGVYLQEA 232 (671)
T ss_pred ccCccceeeeeeccCc-EEEecCCcceEEccccce-EEEcCCCcchhhHHHHHHHhcCcEEEEec-------cceEEEch
Confidence 3456788888888884 556675556667766533 33332212223344444444555544432 45666664
Q ss_pred CCCcEEEEEe--ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198 122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPGLQRG 197 (411)
Q Consensus 122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg 197 (411)
+..+...... ....|..+.-..+|.+-+ .++.+-.+......... ..+.+.....+..+..+.++.+- .+..+|
T Consensus 233 ~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLW--v~t~~g 310 (671)
T COG3292 233 EGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLW--VGTYGG 310 (671)
T ss_pred hhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEe--eeccCc
Confidence 4422111111 234454444444544444 33333333433322221 12223332344556666666655 355666
Q ss_pred eEEEEEcCCcceEEEecccc-ceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198 198 QVRIEHFGLNMIKLINAHDS-HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274 (411)
Q Consensus 198 ~i~i~~~~~~~~~~~~~~~~-~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 274 (411)
.+++-...-.....+....+ .+-..+.+| .+..+.-...-|. +.+-+-.+|..+.....- -...|+.+++..+|.
T Consensus 311 iv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~ 388 (671)
T COG3292 311 IVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGR 388 (671)
T ss_pred eEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCc
Confidence 77763222222222221111 111111222 1111222222233 444444555555443321 223566667766554
Q ss_pred EEEEEeCCCcEEEEEccc
Q 015198 275 WLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 275 ~l~s~s~dg~I~vwd~~~ 292 (411)
+-.++..+-+..|+.++
T Consensus 389 -lWlgs~q~GLsrl~n~n 405 (671)
T COG3292 389 -LWLGSMQNGLSRLDNKN 405 (671)
T ss_pred -EEEEecccchhhhccCC
Confidence 44455553366676665
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.99 E-value=6.6 Score=32.20 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=22.8
Q ss_pred ceEEEEEccC-------CEEEEEEeCCcEEEEEEec
Q 015198 361 THFIAAFGSQ-------NTVVIVSMDGSFYRCSFDP 389 (411)
Q Consensus 361 ~~~~~~~~~~-------~~~~~~~~dg~~~~~~~~~ 389 (411)
.+..++|||. -.|++.+.+|.|.+|.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 5667889984 4588888899999997663
No 443
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=87.93 E-value=6.3 Score=39.95 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=25.9
Q ss_pred cCceeEEEEcCCeEEEE-EcCeEEEEEcCCce
Q 015198 133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK 163 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~ 163 (411)
...|.+++.+.+..++. .+|.|+-|-++...
T Consensus 228 gh~~~qisvs~~HslvLT~~g~Vys~GlN~~h 259 (1267)
T KOG0783|consen 228 GHKVIQISVSHTHSLVLTKFGSVYSWGLNGSH 259 (1267)
T ss_pred ccceEEEEeecceeEEEeecceEEEeecCccc
Confidence 56788999999998888 89999999886543
No 444
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.77 E-value=25 Score=33.54 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=25.4
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV 292 (411)
Q Consensus 263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~ 292 (411)
.|..++..+..+.|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999889999999999999999985
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.16 E-value=40 Score=34.95 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=99.5
Q ss_pred CeEEEEECCCCcEEEEEeecCce---------eEEEEcC-----------------CeEEEE--EcCeEEEEEcCCceee
Q 015198 114 TKVIIWDDHQSRCIGEFAFRSDV---------RSVKLSR-----------------DRIVVV--LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~~~~~i---------~~~~~~~-----------------~~~~~~--~dg~i~iwd~~~~~~~ 165 (411)
+.|.-.|..+|+.+..+.....+ ..+.+.. ++++++ .|+.++-.|.++|+.+
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 88999999999999888743222 1222221 123434 7999999999999988
Q ss_pred EEEeccCC----------CcceEEEccCC---CceEEEEecC---------CCCeEEEEE-cCCcceEEEecc-------
Q 015198 166 HQIETLAN----------LRGLCCLSHHS---STSVLACPGL---------QRGQVRIEH-FGLNMIKLINAH------- 215 (411)
Q Consensus 166 ~~~~~~~~----------~~~~~~~~~~~---~~~~l~~~g~---------~dg~i~i~~-~~~~~~~~~~~~------- 215 (411)
..+..... +.........| ++ .+++.++ -+|.|+-++ .+++.+-.+..-
T Consensus 284 W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~ 362 (764)
T TIGR03074 284 EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAP 362 (764)
T ss_pred EEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccC
Confidence 76532110 00000001111 22 2222211 146666633 444444333210
Q ss_pred ---------c-cce-eEEEecCCCCEEEEEc------------------CCCeEEEEEECCCCceEEEEeCCCCCc----
Q 015198 216 ---------D-SHI-ACFTLTLDGLLLATAS------------------TRGTLIRIFNTVDGTRLQEVRRGVDRA---- 262 (411)
Q Consensus 216 ---------~-~~i-~~l~~sp~g~~l~s~s------------------~dg~~I~vwd~~~~~~~~~~~~~~~~~---- 262 (411)
. ..+ ..++++++..+++.+. ..+. |.-.|.++|+.+-.++..+|.-
T Consensus 363 ~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s-lvALD~~TGk~~W~~Q~~~hD~WD~D 441 (764)
T TIGR03074 363 PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS-LVALDATTGKERWVFQTVHHDLWDMD 441 (764)
T ss_pred CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce-EEEEeCCCCceEEEecccCCcccccc
Confidence 0 011 2345555554444322 1234 7778899999888877533321
Q ss_pred ---ceEEEEeCC-CCC---EEEEEeCCCcEEEEEccccccCC
Q 015198 263 ---EIYSIALSP-NVQ---WLAVASDKGTVHIFSLRVRVVGE 297 (411)
Q Consensus 263 ---~v~~l~~sp-dg~---~l~s~s~dg~I~vwd~~~~~~~~ 297 (411)
...-+.+.. +|+ .++.++.+|.++++|-++|+..-
T Consensus 442 ~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 442 VPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 111122322 563 78899999999999999998654
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.87 E-value=28 Score=32.90 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=59.4
Q ss_pred EccCCCceEEEEecCCCCeEEE-EEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-----eE
Q 015198 180 LSHHSSTSVLACPGLQRGQVRI-EHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----RL 252 (411)
Q Consensus 180 ~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----~~ 252 (411)
+...+++.++++ | ..|.+.. |+..... ...-......+..+.+.+++.+++++ ..|. + ++....++ ..
T Consensus 244 v~~~~dG~~~~v-g-~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 244 VNRSPDGDYVAV-S-SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEEDFDF 318 (398)
T ss_pred EEEcCCCCEEEE-E-CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCcccccce
Confidence 344556666655 3 4566665 4433321 11222335668899999999877665 4565 4 34444554 22
Q ss_pred EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
..+........+.++.|.+++..+ .++..|.+... .+.|+
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS-TDGGK 358 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe-CCCCc
Confidence 333221122358899999887755 45567755443 34444
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.80 E-value=13 Score=28.86 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=63.5
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------ceEEeecCCCCEEEEEEecc--CCeEEEEecCCCCCCCCCeE
Q 015198 48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKV 116 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~~i 116 (411)
..-.|......|++++ .|.|.|++..... .+....+...-..+.+-.+. .+...|+-|+. ..|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~------t~l 75 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ------TSL 75 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc------ceE
Confidence 3456777777899888 9999999876322 22223332222222222333 23344444444 789
Q ss_pred EEEECCCCcEEEEEeecCceeEEEEcC----CeEEEE--EcCeEEEEEcCCceee
Q 015198 117 IIWDDHQSRCIGEFAFRSDVRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLL 165 (411)
Q Consensus 117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~--~dg~i~iwd~~~~~~~ 165 (411)
..||+..+..+..-.....|.++.+-. +..+++ .+..|.-||.+..+..
T Consensus 76 laYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred EEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 999998887666555667777777632 222333 4555666665443433
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.72 E-value=18 Score=34.78 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEEEC----------CCCceEEEEe---------CCCCCcceEEEEeCCCC---CE
Q 015198 218 HIACFTLTLDGLLLATASTRGTLIRIFNT----------VDGTRLQEVR---------RGVDRAEIYSIALSPNV---QW 275 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~spdg---~~ 275 (411)
.|..+..++.|..++-++.+|. + |..+ ++|+.....+ .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi-~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL-M-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCee-E-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4677888999998888888885 3 3333 2343221111 11011256778999976 57
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198 276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS 316 (411)
Q Consensus 276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (411)
|..-+.|+.|++||+......-....+ +.|+---.+|+
T Consensus 183 L~iL~sdnviRiy~lS~~telylqpge---pgRS~tn~Si~ 220 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELYLQPGE---PGRSPTNVSIL 220 (741)
T ss_pred EEEEecCcEEEEEecCCcchhhccCCC---cCCCCccceee
Confidence 788889999999999987665333332 44544445555
No 449
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.02 E-value=26 Score=31.68 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=53.4
Q ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc----ceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198 218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA----EIYSIALSPNVQWLAVASDKGTVHIFSLR 291 (411)
Q Consensus 218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~s~s~dg~I~vwd~~ 291 (411)
-|++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.. .+ .-...+|-.|-+++-.+..++.|.|||=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4677788899999999988888 9999999999998887631 11 11124454566666666788899999973
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.97 E-value=13 Score=32.30 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=73.9
Q ss_pred EEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCC---cce-EEE---eccccceeEEEe
Q 015198 154 IYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGL---NMI-KLI---NAHDSHIACFTL 224 (411)
Q Consensus 154 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~---~~~-~~~---~~~~~~i~~l~~ 224 (411)
-.+||+.+++.. .+....+ ..+..-.+-++|.+|.+.|..+|. ++++.... .+- ... .....+-.....
T Consensus 48 s~~yD~~tn~~r-pl~v~td-~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTD-TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCC-CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 357888776543 3333222 234444566788888876665544 55533222 110 000 112233334555
Q ss_pred cCCCCEEEEEcCCCeEEEEEECCC-CceEEEE--eC----CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198 225 TLDGLLLATASTRGTLIRIFNTVD-GTRLQEV--RR----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 225 sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~--~~----~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 296 (411)
-|||+.|+.|+.......+|.-.. ......+ .. .....---.+...|||++++.+..+. .|||..+++..
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~ 202 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV 202 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence 689999999888765356665422 1111111 11 00111222456679999998887665 67788887653
No 451
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.97 E-value=36 Score=33.26 Aligned_cols=130 Identities=11% Similarity=0.170 Sum_probs=74.8
Q ss_pred CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceE
Q 015198 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV 188 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (411)
+.+.+-+-.+|..+.... -...|+.+++..++..-+ ..+-+..|+.++ +..+....+. ....++++-.++++.+
T Consensus 354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dnsL 432 (671)
T COG3292 354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNSL 432 (671)
T ss_pred ceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCCE
Confidence 555666666676666543 345677777776665554 344566666555 2222222222 1235678888888885
Q ss_pred EEEecCCCCeEEEEEcCCcceEEEe--c---cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLIN--A---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG 249 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~~--~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~ 249 (411)
.+ |..+|.++......+....+. . ..+.+..+.+.|+|++-+. +.+| |..|+-+..
T Consensus 433 WI--GTs~Glvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a-~g~g--va~~~sq~~ 493 (671)
T COG3292 433 WI--GTSGGLVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA-AGSG--VAAWESQRR 493 (671)
T ss_pred EE--eccCCeEecCccccchhcccccccCcCCcchhhhhccCCCCceEEE-ecce--eeeeccccc
Confidence 53 668888887544433332221 2 2345778889999985333 3333 778875443
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.96 E-value=0.11 Score=48.46 Aligned_cols=141 Identities=19% Similarity=0.207 Sum_probs=88.9
Q ss_pred EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce
Q 015198 88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK 163 (411)
Q Consensus 88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~ 163 (411)
...+...|.+++.-++.+..+ ..+..|| +.++.+.....++....++|..++..++ ..+.+++||+.+..
T Consensus 35 v~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 344455566655445544444 7788888 6777777777788888899998876665 78999999996532
Q ss_pred eeEEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec-cccceeEEEecCCCCEEEEEcCCCe
Q 015198 164 LLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 164 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
. ++++. ....... +.|++....++. |...|.+.|+...........+ |...++++++.+.+. .+.++.|..
T Consensus 109 t-qqLE~gg~~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred H-HHHhccCcchHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 2 22221 1111122 455555555554 5678888886655433333344 899999999998874 444555544
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.57 E-value=8.3 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=25.2
Q ss_pred cceeEEEecCCC------CEEEEEcCCCeEEEEEECCC
Q 015198 217 SHIACFTLTLDG------LLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 217 ~~i~~l~~sp~g------~~l~s~s~dg~~I~vwd~~~ 248 (411)
..+..++|||.| -+|++.+.++. |.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence 378899999965 37889999999 99997553
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.11 E-value=22 Score=37.98 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=43.9
Q ss_pred ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
-+..++.+..+......+ .+...+. +-+|+.........+.. ....++.++..++++-.||.+.+||+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLP-------NGQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhccc-------ccccCccCCceEEEEEecCCEEeeecCCC
Confidence 344555555554444332 3344455 66676544333333332 11112889999999999999999999998
Q ss_pred cc
Q 015198 294 VV 295 (411)
Q Consensus 294 ~~ 295 (411)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 54
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=85.00 E-value=32 Score=31.73 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=79.4
Q ss_pred cCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE-EcCCcce
Q 015198 133 RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE-HFGLNMI 209 (411)
Q Consensus 133 ~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~-~~~~~~~ 209 (411)
...+.++.+.+++.+++ ..|.++.-.-..++.-..+... .......+...+++..+++ | ..|.+++- ...+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~v-g-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRN-SSRRLQSMGFQPDGNLWML-A-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCC-CcccceeeeEcCCCCEEEE-e-cCCEEEEccCCCCCcc
Confidence 45788899999988777 4555543211222222222221 1123445555555555554 4 56777652 2222221
Q ss_pred EEEec----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-CCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198 210 KLINA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGT 284 (411)
Q Consensus 210 ~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (411)
..... ....+..+.+.+++..++ ++.+|. |. .....|+.-..... ..-....+.+.|..+++.++ .+..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~-v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGT-LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCe-EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCce
Confidence 21111 224577889999887655 445665 43 44455554433321 11223577888876666554 567787
Q ss_pred EEEEE
Q 015198 285 VHIFS 289 (411)
Q Consensus 285 I~vwd 289 (411)
|.-|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 76664
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.88 E-value=40 Score=32.85 Aligned_cols=188 Identities=10% Similarity=0.035 Sum_probs=89.0
Q ss_pred CCeEEEEec---CCCCCCCCCeEEEEECCCCcEEEEEeec-CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEecc
Q 015198 97 CNILALVGA---GDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL 171 (411)
Q Consensus 97 ~~~~~l~s~---~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~ 171 (411)
.++.+++.. ... ....+.| ..|..+..+... .....+...++|.+++ ....++.+|+- |+.+..+...
T Consensus 113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~ 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLP 185 (477)
T ss_dssp TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--
T ss_pred CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCC-CCEEEeeecC
Confidence 466777776 222 6788888 677777766632 2222267788998888 67888888874 6666665443
Q ss_pred CCC-cceEEEccCCCceEEEEecC-------------CCCeEEEEEcCCcceEEEec--c--------------------
Q 015198 172 ANL-RGLCCLSHHSSTSVLACPGL-------------QRGQVRIEHFGLNMIKLINA--H-------------------- 215 (411)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~l~~~g~-------------~dg~i~i~~~~~~~~~~~~~--~-------------------- 215 (411)
... ..--.+.+.++|.+|+.+.. .|..+.|+ ..++.+..+.. |
T Consensus 186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~ 264 (477)
T PF05935_consen 186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS 264 (477)
T ss_dssp TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccC
Confidence 321 01122334455555554330 23333333 44443333210 0
Q ss_pred -----ccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-----cceEE---------------EEe
Q 015198 216 -----DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-----AEIYS---------------IAL 269 (411)
Q Consensus 216 -----~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-----~~v~~---------------l~~ 269 (411)
-..++++.+.+ ++.+|+++-.... |...|.++++....+-.+..- ..+.. ..|
T Consensus 265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~ 343 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW 343 (477)
T ss_dssp STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS---
T ss_pred CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc
Confidence 02478899988 5555555555556 889998888887776542100 00100 111
Q ss_pred CCCCCEEEEEeCCC---cEEEEEccccc
Q 015198 270 SPNVQWLAVASDKG---TVHIFSLRVRV 294 (411)
Q Consensus 270 spdg~~l~s~s~dg---~I~vwd~~~~~ 294 (411)
+-|++-+.--.+| .|.|||=..+.
T Consensus 344 -~~gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 344 -FWGQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp --SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred -cccccceEEcCCCCeEEEEEEECCCCC
Confidence 2355666666777 89999977655
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.34 E-value=15 Score=34.91 Aligned_cols=37 Identities=8% Similarity=-0.227 Sum_probs=31.3
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC
Q 015198 39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF 75 (411)
Q Consensus 39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~ 75 (411)
.+.+....+.++..+|++++.|+.. -|.|.|+|+...
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 4566778899999999999888877 799999999864
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.98 E-value=18 Score=28.07 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=45.0
Q ss_pred EEecCCCCEEEEEcCCCeEEEEEECCCC--------ceEEEEeCCCCCcceEEEEeCC-----CCCEEEEEeCCCcEEEE
Q 015198 222 FTLTLDGLLLATASTRGTLIRIFNTVDG--------TRLQEVRRGVDRAEIYSIALSP-----NVQWLAVASDKGTVHIF 288 (411)
Q Consensus 222 l~~sp~g~~l~s~s~dg~~I~vwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp-----dg~~l~s~s~dg~I~vw 288 (411)
-.|......|+.++.-|+ |.|++.... ..+..+. -...|++|+-.+ +...|+.|+.. .|..|
T Consensus 4 GkfDG~~pcL~~aT~~gK-V~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~t-~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGK-VFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCE-EEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEE
Confidence 345555567888888888 999986532 2344444 334566665433 34467776655 59999
Q ss_pred EccccccC
Q 015198 289 SLRVRVVG 296 (411)
Q Consensus 289 d~~~~~~~ 296 (411)
|+......
T Consensus 79 DV~~N~d~ 86 (136)
T PF14781_consen 79 DVENNSDL 86 (136)
T ss_pred EcccCchh
Confidence 99988643
No 459
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.79 E-value=16 Score=36.82 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=27.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC
Q 015198 43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP 74 (411)
Q Consensus 43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~ 74 (411)
...-++++.-+|.|+-++.+. ||.|++|+..+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 345678888899999999999 99999999865
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.59 E-value=4.1 Score=40.50 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.2
Q ss_pred ceEEEEeCC----CCCEEEEEeCCCcEEEEEcccccc
Q 015198 263 EIYSIALSP----NVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 263 ~v~~l~~sp----dg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
.+..++++. +..+|++.+.|+++++||+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 455566666 678999999999999999999998
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.33 E-value=27 Score=29.60 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=36.6
Q ss_pred CEEEEEcCCCeEEEEEECC--CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198 229 LLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282 (411)
Q Consensus 229 ~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d 282 (411)
..|+.+..... |.+|++. ..+.+.+|.. -+.|..+.++..|++|++--.+
T Consensus 29 d~Lfva~~g~~-Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCK-VEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCE-EEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence 34444455566 9999987 3456667764 4689999999999999986544
No 462
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.80 E-value=42 Score=31.39 Aligned_cols=194 Identities=14% Similarity=0.049 Sum_probs=98.5
Q ss_pred cCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198 53 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF 132 (411)
Q Consensus 53 s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~ 132 (411)
.-+++.++...+|.|.-.|.++...+....+......+..-....++.++++... +.+..+|..+|+.+.....
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------GKLYALDASTGTLVWSRNV 139 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc------ceEEEEECCCCcEEEEEec
Confidence 3345444443477777777776655544333110111111122226666665443 8899999889999988885
Q ss_pred cC--ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCC-CcceEEEcc-CCCceEEEEecCC--CCeEEE-EE
Q 015198 133 RS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSH-HSSTSVLACPGLQ--RGQVRI-EH 203 (411)
Q Consensus 133 ~~--~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~g~~--dg~i~i-~~ 203 (411)
.. .+..-.+-.++.... .++.++..|..+|+....+..... ..... ..+ ..++ .+.. +.. ++.+.- ..
T Consensus 140 ~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~-~vy~-~~~~~~~~~~a~~~ 216 (370)
T COG1520 140 GGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY-GSPAIASG-TVYV-GSDGYDGILYALNA 216 (370)
T ss_pred CCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccc-cCceeecc-eEEE-ecCCCcceEEEEEc
Confidence 54 222333344555555 378999999888888777654321 11111 111 1122 2222 323 332322 22
Q ss_pred cCCcceEEEecc----ccceeEE-Ee-----cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198 204 FGLNMIKLINAH----DSHIACF-TL-----TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (411)
Q Consensus 204 ~~~~~~~~~~~~----~~~i~~l-~~-----sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (411)
.++......+.+ ...+... .+ .-++ -+..++.++. +...|..+|+.+..+..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~-~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGK-LLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCe-EEEEEcCCCceEEEEec
Confidence 244333332111 0001000 11 1122 2356677787 88889999998888775
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.54 E-value=0.21 Score=46.75 Aligned_cols=139 Identities=11% Similarity=0.109 Sum_probs=89.9
Q ss_pred EEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc-
Q 015198 140 KLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH- 215 (411)
Q Consensus 140 ~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~- 215 (411)
.|-+.+..++ .+..+..|| +.++....+.. +...+.+.++-++..++...-..+.+++|+.+.+..+++...
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYD-KAGQVILELNP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eEecCCCceehhhhhhHHHhhh-hhcceecccCC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3444443343 566677777 33444433322 225567777777777766666889999999887665555321
Q ss_pred ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH 286 (411)
Q Consensus 216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~ 286 (411)
...-.-+.|++.+..++.+...|. +.|++..+.+.+...- .|...++++++.+.+. .+.++.|..+.
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~iiv~G--kh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRIIVMG--KHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred cchHHHHhhccCCccccccccccc-eEEEeccchhhhhhhc--ccccceeEEEecccce-eeecCcHHHHH
Confidence 111222678999999999999999 9999977766553333 2777899999998765 44555554443
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.16 E-value=44 Score=31.24 Aligned_cols=149 Identities=12% Similarity=0.033 Sum_probs=71.6
Q ss_pred EEEEEeccCCeEEEEecCCCC------CCCCC-eEEEEECCC--CcE--EEEEe-ecCceeEEEEcCCeEEEEEcCeEEE
Q 015198 89 RIVEMLFRCNILALVGAGDNS------QYPPT-KVIIWDDHQ--SRC--IGEFA-FRSDVRSVKLSRDRIVVVLEHKIYV 156 (411)
Q Consensus 89 ~~~~~~~~~~~~~l~s~~~d~------~~~d~-~i~vwd~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~~~~dg~i~i 156 (411)
....+.+.+++.++++...+- ....+ .|.+++..+ |+. ...+. .-.....+++.+++.+++....|..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~ 94 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF 94 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence 345667777777766642110 00113 677776433 332 22332 2345678999999955555555655
Q ss_pred E-EcCC-c----eeeEEEeccCC-----CcceEEEccCCCceEEEEecCCC------------------CeEEEEEcCCc
Q 015198 157 Y-SFVD-L----KLLHQIETLAN-----LRGLCCLSHHSSTSVLACPGLQR------------------GQVRIEHFGLN 207 (411)
Q Consensus 157 w-d~~~-~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~d------------------g~i~i~~~~~~ 207 (411)
| |... + +....+..-.. ......+.+.+++.+.++.|+.. |.|.-.+..+.
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~ 174 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG 174 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence 5 4321 1 21111211111 11233455666766665555321 22222333333
Q ss_pred ceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198 208 MIKLINAHDSHIACFTLTLDGLLLATASTR 237 (411)
Q Consensus 208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 237 (411)
....+...-.....++|+++|+++++-..+
T Consensus 175 ~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 175 KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 333333223334678899988877664433
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.07 E-value=44 Score=31.23 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=86.7
Q ss_pred eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec----CCCCE--EEEEcC-C---CeEEEEEECC--CCceEEE
Q 015198 187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT----LDGLL--LATAST-R---GTLIRIFNTV--DGTRLQE 254 (411)
Q Consensus 187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s----p~g~~--l~s~s~-d---g~~I~vwd~~--~~~~~~~ 254 (411)
.+++. ...++-+.+++.+++.++.+.. +.++.+..- -+|+. |+.++. + .. |++|.+. ++ .+..
T Consensus 69 SlIig-TdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~-l~~f~id~~~g-~L~~ 143 (381)
T PF02333_consen 69 SLIIG-TDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS-LRLFRIDPDTG-ELTD 143 (381)
T ss_dssp -EEEE-EETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E-EEEEEEETTTT-EEEE
T ss_pred ceEEE-EeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCe-EEEEEecCCCC-cceE
Confidence 34443 4577889999999999888753 334443332 13442 444443 2 45 9999775 33 3334
Q ss_pred EeCCC-----CCcceEEEEeC--C-CCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198 255 VRRGV-----DRAEIYSIALS--P-NVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP 325 (411)
Q Consensus 255 ~~~~~-----~~~~v~~l~~s--p-dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (411)
+.... ....++.+|+- + +|. +.++...+|.+..|.+.......
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~---------------------------- 195 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK---------------------------- 195 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS----------------------------
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc----------------------------
Confidence 33211 12346777764 3 455 55677889999999997543221
Q ss_pred CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCCCc
Q 015198 326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGE 394 (411)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~ 394 (411)
+ .-..+.+|+++.....+++-...+.|+++=++--|+.|..+++.+..
T Consensus 196 ---------------v------~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~ 243 (381)
T PF02333_consen 196 ---------------V------SATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGND 243 (381)
T ss_dssp ---------------E------EEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S-
T ss_pred ---------------E------eeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCc
Confidence 0 01124578888866666655666999998888878888877765543
No 466
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.59 E-value=15 Score=26.35 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=27.5
Q ss_pred cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198 235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280 (411)
Q Consensus 235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 280 (411)
..+|. +.-||..+++....+.+ -.-.+.+++++|+.+|+.+-
T Consensus 34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEEe
Confidence 44677 88999988876444443 22578999999999776653
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.22 E-value=8.9 Score=22.38 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=21.0
Q ss_pred CCCCEEEEEe--CCcEEEEecCCCcceEEee
Q 015198 54 QDYGCFAAGT--SCGFRIYNCEPFKETFRRD 82 (411)
Q Consensus 54 ~~g~~la~g~--dg~i~iw~~~~~~~~~~~~ 82 (411)
|++++|.++. ++.|.++|..+........
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6788777766 8999999987755444433
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.19 E-value=6.3 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=19.7
Q ss_pred EeccccceeEEEecCCCCEEEEEcC-C--CeEEEEE
Q 015198 212 INAHDSHIACFTLTLDGLLLATAST-R--GTLIRIF 244 (411)
Q Consensus 212 ~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vw 244 (411)
+...........|+|||+.|+-.+. + |. -.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 3344556678899999998776554 3 44 5554
No 469
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.78 E-value=83 Score=32.88 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=49.1
Q ss_pred ccccceeEEEec---C----CCCEEEEEcCCCeEEEEEE------CCC---------CceEEEEeCCC-CCcceEEEEeC
Q 015198 214 AHDSHIACFTLT---L----DGLLLATASTRGTLIRIFN------TVD---------GTRLQEVRRGV-DRAEIYSIALS 270 (411)
Q Consensus 214 ~~~~~i~~l~~s---p----~g~~l~s~s~dg~~I~vwd------~~~---------~~~~~~~~~~~-~~~~v~~l~~s 270 (411)
....+|..|+|. . ..++|++-.. .. +.|+. +.. ..++..+.... ...+..+++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~s-t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TS-TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CE-EEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence 457788889887 2 2246655443 34 67776 111 12334444211 12367889999
Q ss_pred C-CCCEEEEEeCCCcEEEEEcccc
Q 015198 271 P-NVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 271 p-dg~~l~s~s~dg~I~vwd~~~~ 293 (411)
| +.+.||+....|.-.||++...
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~ 178 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGR 178 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccc
Confidence 8 4458999999999999999333
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.01 E-value=17 Score=34.33 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=87.3
Q ss_pred ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee-EEE-eccCCCc--ceE-EEccCCCceEEEEecCCCCeEEEEE-
Q 015198 132 FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQI-ETLANLR--GLC-CLSHHSSTSVLACPGLQRGQVRIEH- 203 (411)
Q Consensus 132 ~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~-~~~-~~~~~~~--~~~-~~~~~~~~~~l~~~g~~dg~i~i~~- 203 (411)
....+..+-..||++.+. ....+.++++.+.... +++ ....+.. .+. .+..-..+.-+.+ ++.||.|.-|-
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv-~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV-VHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE-EcCCCceeeeee
Confidence 346777888999998887 6678889888543221 111 1111100 000 1110111222333 56888888753
Q ss_pred cCC------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198 204 FGL------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA 277 (411)
Q Consensus 204 ~~~------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 277 (411)
... ..++.++-...++..+.-..+.+-+++-+.+|+ +.++.....+.+ -+.. .-..+.-+++||.+.+|+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccchhe
Confidence 221 112222222333433333334456777788888 887764333333 2222 222567789999999987
Q ss_pred EEeCCCcEEEEEccccccC
Q 015198 278 VASDKGTVHIFSLRVRVVG 296 (411)
Q Consensus 278 s~s~dg~I~vwd~~~~~~~ 296 (411)
+- +.|.|+++.+++....
T Consensus 374 ~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 374 SE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ee-cCCceEEEEecCCCCC
Confidence 64 4567999999987654
No 471
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.97 E-value=88 Score=32.70 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=69.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCc----ceEEeecC-CC--------CEEEEEEeccCCeEEEEecCCC
Q 015198 44 EIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFK----ETFRRDLK-SG--------GFRIVEMLFRCNILALVGAGDN 108 (411)
Q Consensus 44 ~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~----~~~~~~~~-~~--------~~~~~~~~~~~~~~~l~s~~~d 108 (411)
..+...++|+|. .+.||+-. .|...||++.... ..+..... .+ ......+.|.++...++.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 346788999985 56788888 9999999992111 11111100 01 111224556666545555444
Q ss_pred CCCCCCeEEEEECCCCcEEE-E--EeecCceeEEEEcCC--eE-EEEEcCeEEEEEcCC
Q 015198 109 SQYPPTKVIIWDDHQSRCIG-E--FAFRSDVRSVKLSRD--RI-VVVLEHKIYVYSFVD 161 (411)
Q Consensus 109 ~~~~d~~i~vwd~~~~~~~~-~--~~~~~~i~~~~~~~~--~~-~~~~dg~i~iwd~~~ 161 (411)
..+.++|+++..... . .+....|.++.-++. .. ++.....|...++..
T Consensus 224 -----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred -----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 788888988876533 2 225678889988887 33 334778888888865
No 472
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=76.49 E-value=20 Score=37.17 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=53.7
Q ss_pred EEEecCCCCeEEEEEcCCcceEEE-eccccceeEEEecCCCCEEEE-EcCCC---e-EEEEEECCCC-ceEEEEeCCCCC
Q 015198 189 LACPGLQRGQVRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLAT-ASTRG---T-LIRIFNTVDG-TRLQEVRRGVDR 261 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s-~s~dg---~-~I~vwd~~~~-~~~~~~~~~~~~ 261 (411)
||+.....+.|.+-+.++...+.+ ..+..+|...+|||||+.|+. .+.++ . .|++-|+.+. ..+..+.. ..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--EN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--cc
Confidence 344332335777766777666656 567889999999999999987 44444 1 2888888753 33334443 34
Q ss_pred cceEEEEeCCCCCE
Q 015198 262 AEIYSIALSPNVQW 275 (411)
Q Consensus 262 ~~v~~l~~spdg~~ 275 (411)
..|-.-...++|..
T Consensus 399 aaiprwrv~e~gdt 412 (912)
T TIGR02171 399 AAIPRWRVLENGDT 412 (912)
T ss_pred ccccceEecCCCCe
Confidence 45555555566654
No 473
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.18 E-value=8.2 Score=21.17 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.3
Q ss_pred EEEEEcCCCeEEEEEECCCCceEEEE
Q 015198 230 LLATASTRGTLIRIFNTVDGTRLQEV 255 (411)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~ 255 (411)
.++.++.++. +..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 5777888899 999999999877553
No 474
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.57 E-value=64 Score=28.88 Aligned_cols=189 Identities=10% Similarity=0.034 Sum_probs=104.3
Q ss_pred EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEE---EeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCc---
Q 015198 90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE---FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL--- 162 (411)
Q Consensus 90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~--- 162 (411)
+..+.++.+..+++-.+ .-+++.|+.+...-.. +...+--.++..+-+-.+++ .|..+.+.|+.+.
T Consensus 89 ~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 89 FADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 34455666666665533 6789999776543333 33446667777887777777 5777788888654
Q ss_pred eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCe
Q 015198 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
.+...+...... ....+.+++..+.+ ..|+-+.|-+......-.+.+| ...+.++..+++..+++... ..
T Consensus 162 ~lagrya~~~~d--~~~v~ISGn~AYvA---~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--eg 234 (370)
T COG5276 162 QLAGRYALPGGD--THDVAISGNYAYVA---WRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EG 234 (370)
T ss_pred eeeeeeccCCCC--ceeEEEecCeEEEE---EeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cc
Confidence 233333333221 12344445443433 2566666644444333333333 23677887777766665543 33
Q ss_pred EEEEEECCCCceEEEEeCCCCCcceEEE-EeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 240 LIRIFNTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
+.+-|..+.+....+... ....+.++ .+.-.+++......+.-+.+-|++++.
T Consensus 235 -vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 235 -VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred -eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 777787666544333322 22222222 233345666666667667888887765
No 475
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.25 E-value=35 Score=36.25 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=79.9
Q ss_pred EEEEEEeccCC--eEEEEecCCCCCCCCCeEEEEECCCCcE--------EEEEe----ecCceeEEEEcCCe---EEEE-
Q 015198 88 FRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSRC--------IGEFA----FRSDVRSVKLSRDR---IVVV- 149 (411)
Q Consensus 88 ~~~~~~~~~~~--~~~l~s~~~d~~~~d~~i~vwd~~~~~~--------~~~~~----~~~~i~~~~~~~~~---~~~~- 149 (411)
..++.+...+| ...++....+ ..|..||+++-.. ++.-. ...-..++.|+|.- ..+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng-----~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNG-----EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCC-----ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence 33444444444 3334444434 6889999765321 11111 12345567787742 2222
Q ss_pred EcCeEEEEEcCCcee-eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc----ccceeEEEe
Q 015198 150 LEHKIYVYSFVDLKL-LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH----DSHIACFTL 224 (411)
Q Consensus 150 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~----~~~i~~l~~ 224 (411)
.|+.|++..+..... ...+ .-.....++.|++.|..+++ |...|++.-+.........+... ...|.+|+|
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~i-G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFI-GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred cccchhhhhhhhhhhhhccc---CcccceeeEEeccccceeeE-ecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence 788888887643221 1111 12234567788888888876 88888888777777655555322 467899999
Q ss_pred cCCCCEEEE
Q 015198 225 TLDGLLLAT 233 (411)
Q Consensus 225 sp~g~~l~s 233 (411)
-....+|++
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 877776664
No 476
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.16 E-value=1.1e+02 Score=31.35 Aligned_cols=144 Identities=7% Similarity=0.042 Sum_probs=80.2
Q ss_pred CCEEEEEeCCcEEEEecCCCcceEE----eec------------------CCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198 56 YGCFAAGTSCGFRIYNCEPFKETFR----RDL------------------KSGGFRIVEMLFRCNILALVGAGDNSQYPP 113 (411)
Q Consensus 56 g~~la~g~dg~i~iw~~~~~~~~~~----~~~------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d 113 (411)
+.+|+++..+.|.||+.+....... ..+ ..|.+..+.+..-.+..+|+.+.+|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd----- 123 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD----- 123 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-----
Confidence 7788888899999999875433211 000 1233334444444556667777776
Q ss_pred CeEEEEECCC-------C-------------cEEEEEeecCceeEEEEc--CCeEEEE---EcCeEEEEEcCC--ceeeE
Q 015198 114 TKVIIWDDHQ-------S-------------RCIGEFAFRSDVRSVKLS--RDRIVVV---LEHKIYVYSFVD--LKLLH 166 (411)
Q Consensus 114 ~~i~vwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~~~---~dg~i~iwd~~~--~~~~~ 166 (411)
|.|.+|.+++ . ++-..+.....+++++++ ...++++ ....|.||-+.. .+...
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 9999997421 1 012223356788999998 7777777 334565554422 22111
Q ss_pred E-EeccCCCcceEEEccCC---CceEEEEecCCCCeEEEEEc
Q 015198 167 Q-IETLANLRGLCCLSHHS---STSVLACPGLQRGQVRIEHF 204 (411)
Q Consensus 167 ~-~~~~~~~~~~~~~~~~~---~~~~l~~~g~~dg~i~i~~~ 204 (411)
. -..+.+.+..++|..+. .|...+++++-.|.+.++..
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 11234445556665544 23223334567787777444
No 477
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=73.68 E-value=14 Score=32.28 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceE
Q 015198 274 QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFA 353 (411)
Q Consensus 274 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (411)
..|+.|+++|.|+|.|-+.-... .
T Consensus 196 scLViGTE~~~i~iLd~~af~il--------------------------------------------------------~ 219 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTIL--------------------------------------------------------K 219 (257)
T ss_pred ceEEEEecCCeEEEECchhheeE--------------------------------------------------------E
Confidence 36889999999999987665432 3
Q ss_pred EEEeCCCceEEEEEc----cCCEEEEEEeCCcEEEE
Q 015198 354 QFHIPEVTHFIAAFG----SQNTVVIVSMDGSFYRC 385 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~----~~~~~~~~~~dg~~~~~ 385 (411)
++++|.....+++.+ -+-+|+++|-||.||..
T Consensus 220 ~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 220 QVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred EEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 677776555655543 55799999999988864
No 478
>PHA03098 kelch-like protein; Provisional
Probab=73.34 E-value=1e+02 Score=30.56 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=15.7
Q ss_pred CCCEEEEEcCC-----CeEEEEEECCCCc
Q 015198 227 DGLLLATASTR-----GTLIRIFNTVDGT 250 (411)
Q Consensus 227 ~g~~l~s~s~d-----g~~I~vwd~~~~~ 250 (411)
++++++.|+.+ .. |.+||..+.+
T Consensus 487 ~~~iyv~GG~~~~~~~~~-v~~yd~~~~~ 514 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINE-IEVYDDKTNT 514 (534)
T ss_pred CCEEEEEcCCcCCcccce-eEEEeCCCCE
Confidence 66777777654 35 8888877654
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=73.30 E-value=1.3e+02 Score=31.95 Aligned_cols=136 Identities=14% Similarity=0.045 Sum_probs=73.9
Q ss_pred eEEEEEcCCceeeEEEeccCC--Cc--ceEEEccCCCceEEEEecC----------CCCeEEEEE--cCCcceEEEecc-
Q 015198 153 KIYVYSFVDLKLLHQIETLAN--LR--GLCCLSHHSSTSVLACPGL----------QRGQVRIEH--FGLNMIKLINAH- 215 (411)
Q Consensus 153 ~i~iwd~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~g~----------~dg~i~i~~--~~~~~~~~~~~~- 215 (411)
.|+++|..+++.+..+....+ .. ....++..+...++++.+. .+|.++.+. .+++.+..+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 377888777777666654433 11 2233333444334433221 123344422 222322222111
Q ss_pred -ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 216 -DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 216 -~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.+++ .++.|-..++.+|- ... +++||+...++++..+....+..|..+++. +..+++|...-.+.++..+...
T Consensus 934 ~~~~v--~Ai~~f~~~~Lagv-G~~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQGRVLAGV-GRF-LRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCccc--eEEeccCCEEEEec-ccE-EEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCC
Confidence 2233 45566666555544 345 999999887777666554346678888874 4678888777677777665543
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.93 E-value=1.3e+02 Score=31.89 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCeEEEEEC-CCCcEEEEEe---ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198 113 PTKVIIWDD-HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS 187 (411)
Q Consensus 113 d~~i~vwd~-~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (411)
++.++.|++ +.|+.+.-+. -.+.+.+++-..+ .+++ ....+++||+...++++..+...-+..+..+.+...
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-- 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-- 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecce--
Confidence 366777773 4455332222 3456666654444 4444 889999999988777766554443445555555443
Q ss_pred EEEEecCCCCeEEE-EEcCCcceEEEecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECC
Q 015198 188 VLACPGLQRGQVRI-EHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247 (411)
Q Consensus 188 ~l~~~g~~dg~i~i-~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~ 247 (411)
.++++-..++...+ |....+.+..+... ...|+++.+- |...+|.+..-|. +.+-.+.
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN-i~~vR~P 1048 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGN-IAVVRIP 1048 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCc-EEEEECC
Confidence 34443445555555 77777777776543 3456666554 4445777777787 6666543
No 481
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.66 E-value=88 Score=29.65 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=75.6
Q ss_pred eeEEEEcCCeEEEE--EcCeEEE-EEcCCceee-EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----
Q 015198 136 VRSVKLSRDRIVVV--LEHKIYV-YSFVDLKLL-HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---- 207 (411)
Q Consensus 136 i~~~~~~~~~~~~~--~dg~i~i-wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---- 207 (411)
...+..++++.+++ ..|.+.. || .++.. ..+.. ........+.+.+++.++++ + ..|.+..-...+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~-g-~~G~l~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-ASARRIQNMGWRADGGLWLL-T-RGGGLYVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-CCccceeeeeEcCCCCEEEE-e-CCceEEEecCCCCcccc
Confidence 44455667776655 4454433 33 22221 11111 11224455556667767654 3 5677766333332
Q ss_pred -ceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198 208 -MIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG 283 (411)
Q Consensus 208 -~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg 283 (411)
....... ....+..+.|.+++..+++ +..|. +... ...|+.-.... ...-....+.+.|.++++.++ .+.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~-v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGI-LLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE-ECCCc-EEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCc
Confidence 2222221 2235888999988876555 45675 5444 35555433333 111345788999987766555 45778
Q ss_pred cEEEE
Q 015198 284 TVHIF 288 (411)
Q Consensus 284 ~I~vw 288 (411)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 66544
No 482
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=72.45 E-value=1.5e+02 Score=32.14 Aligned_cols=176 Identities=10% Similarity=0.136 Sum_probs=92.7
Q ss_pred CeEEEEECCCCcEEEEEe--ecCceeEEEEc-----C----CeEEEE------------EcCeEEEEEcC-----Cc---
Q 015198 114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLS-----R----DRIVVV------------LEHKIYVYSFV-----DL--- 162 (411)
Q Consensus 114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~-----~----~~~~~~------------~dg~i~iwd~~-----~~--- 162 (411)
..|.+...++++.+-.+. ....+.+++.. . ...+++ ..|.+++||+- -+
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 567777777776665554 23344444432 1 112332 35899999982 22
Q ss_pred --eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCe
Q 015198 163 --KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT 239 (411)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 239 (411)
..++.+......-.+.+++ .-+|.++.+ ....|.+|.+ +...+.-..--.-++.......-+++|+.|.--..
T Consensus 1084 t~~KlKel~~eE~KGtVsavc-eV~G~l~~~---~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVC-EVRGHLLSS---QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred ccceeeeeehhhcccceEEEE-EeccEEEEc---cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhc
Confidence 2233332222111222222 224445433 3467888776 33222211112223333333344567777777676
Q ss_pred EEEEEECCCC-ceEEEEeCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198 240 LIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 240 ~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~ 294 (411)
|.+.-.... ..+..+......-.+.++.|--||. .++++..|++|++|-..-..
T Consensus 1160 -isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1160 -ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred -eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 776655433 3333344333334688888887776 56788899999999766443
No 483
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.56 E-value=17 Score=20.95 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred EEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198 230 LLATASTRGTLIRIFNTVDGTRLQEVRRG 258 (411)
Q Consensus 230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~ 258 (411)
.++.++.+|. |+-.|.++|+.+..+...
T Consensus 2 ~v~~~~~~g~-l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGY-LYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSE-EEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCE-EEEEECCCCCEEEeeeCC
Confidence 3556689999 999999999999888753
No 484
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=71.44 E-value=3.6 Score=41.95 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=48.1
Q ss_pred ccceeEEEec---CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE-----------EeCCCCCEEEEEeC
Q 015198 216 DSHIACFTLT---LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI-----------ALSPNVQWLAVASD 281 (411)
Q Consensus 216 ~~~i~~l~~s---p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l-----------~~spdg~~l~s~s~ 281 (411)
...+.-+.|. ++..++..+-.++. |++..+..... ..+.. |...+..+ ..||||..++.++.
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~-~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR-SLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCc-eeEeeechHHH-HHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 3344445554 45567778888888 88877654322 12222 33333322 36899999999999
Q ss_pred CCcEEEEEcccccc
Q 015198 282 KGTVHIFSLRVRVV 295 (411)
Q Consensus 282 dg~I~vwd~~~~~~ 295 (411)
||.+++|.+.--.+
T Consensus 256 dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGK 269 (1283)
T ss_pred CCccceeeeeeecc
Confidence 99999888865443
No 485
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=71.43 E-value=1.1e+02 Score=30.24 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=100.8
Q ss_pred CCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEcc
Q 015198 112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSH 182 (411)
Q Consensus 112 ~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~ 182 (411)
..+.|.+.| .+.+.+..+. ....|.++.|-.+.-+++ .-.-+++.|+.+. +.+-.++.+. ..--++|
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG---fS~YLHP 377 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG---FSDYLHP 377 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECcc---chhceeE
Confidence 447888888 7777777776 478899999999999988 3456888898664 4555555443 3344666
Q ss_pred CCCceEEEEecCCCCe---------EEE--EEcCC----cceEEEec-c-------ccceeEEEecCCCCEEEEEcC---
Q 015198 183 HSSTSVLACPGLQRGQ---------VRI--EHFGL----NMIKLINA-H-------DSHIACFTLTLDGLLLATAST--- 236 (411)
Q Consensus 183 ~~~~~~l~~~g~~dg~---------i~i--~~~~~----~~~~~~~~-~-------~~~i~~l~~sp~g~~l~s~s~--- 236 (411)
-.++.+|-+ |..... ++| ++... +.+....- . ...-.++.|+++.++|+.--.
T Consensus 378 ~~e~~LlGi-G~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~ 456 (521)
T PF09826_consen 378 YDENHLLGI-GKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSY 456 (521)
T ss_pred CCCCeEEEE-cccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEcc
Confidence 666666655 533322 555 55432 11221111 1 112346778887777664322
Q ss_pred ----CCeEEEEEECCCCc---eEEEEeCCCCCc-------ceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198 237 ----RGTLIRIFNTVDGT---RLQEVRRGVDRA-------EIYSIALSPNVQWLAVASDKGTVHIFSLRVR 293 (411)
Q Consensus 237 ----dg~~I~vwd~~~~~---~~~~~~~~~~~~-------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 293 (411)
-.. +.|+++...+ ....+. |.. .+....+.. ..|.+.+.++ |+++|+++-
T Consensus 457 ~~~~~~g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi~--d~lYtvS~~~-i~~~~l~t~ 520 (521)
T PF09826_consen 457 GYFNFQG-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYIG--DTLYTVSDNG-IKAYDLNTL 520 (521)
T ss_pred Cccccce-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEEC--CEEEEEECCE-EEEEehHhc
Confidence 123 7788876222 223333 332 255555543 4677776554 999998864
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.17 E-value=75 Score=28.19 Aligned_cols=196 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcC-eEEEEEcCCceee-E
Q 015198 91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEH-KIYVYSFVDLKLL-H 166 (411)
Q Consensus 91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg-~i~iwd~~~~~~~-~ 166 (411)
..+...+++.+-.++... +.|--.|..+|+....-- ....-..+...||+..-+ ..+ -|.-.|-++.+.. .
T Consensus 65 ~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred cccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEe
Q ss_pred EEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT 246 (411)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~ 246 (411)
.+.........-...+++.+.+-++ +...-.=+++-.+......-......-+.|+..|+|..-++.-.++. |-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt-~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna-iaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFT-GQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA-IARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEe-eccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-eEEccc
Q ss_pred CCCceEEEEeCCCC-CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 247 VDGTRLQEVRRGVD-RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 247 ~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
.++ .-..+..... ...-..+--+|.|+.-++-...+.++.||-.+..
T Consensus 218 ~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 218 FAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.17 E-value=78 Score=28.38 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=109.2
Q ss_pred CCCCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC---cEEE
Q 015198 54 QDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS---RCIG 128 (411)
Q Consensus 54 ~~g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~---~~~~ 128 (411)
-.|++..++. +..+.+.|+.+.. ..+.............+..+.+..+.+. .| +-+.+-|+... ..+.
T Consensus 136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~--~d-----~GL~ivDVSnp~sPvli~ 208 (370)
T COG5276 136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAW--RD-----GGLTIVDVSNPHSPVLIG 208 (370)
T ss_pred ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEE--eC-----CCeEEEEccCCCCCeEEE
Confidence 3477888888 7788888886432 2222222112222233344444444332 22 77888886554 3344
Q ss_pred EEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEE--eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC
Q 015198 129 EFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG 205 (411)
Q Consensus 129 ~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~ 205 (411)
.......+.++..+++..+++ .+..+.+-|..+.+....+ ....++.....+....+..+++= | ..|-..++. .
T Consensus 209 ~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-g-a~gl~~idi-s 285 (370)
T COG5276 209 SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-G-AKGLPIIDI-S 285 (370)
T ss_pred EEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-c-ccCceeEec-c
Confidence 444566899999999998888 7888888888766644443 22333333333444444333321 2 222222222 1
Q ss_pred CcceEEEecc----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC
Q 015198 206 LNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281 (411)
Q Consensus 206 ~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 281 (411)
...-..+..| ...-..+.. .+.++..+..+ . ..+-|....+......+ ....+.+.+.+-+.+.+.+...
T Consensus 286 np~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 286 NPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred CCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeec
Confidence 1111111111 111112221 23344444433 2 33444433222211111 1123334444445667788888
Q ss_pred CCcEEEEEcc
Q 015198 282 KGTVHIFSLR 291 (411)
Q Consensus 282 dg~I~vwd~~ 291 (411)
++.+.||+..
T Consensus 360 ~~gl~i~~~~ 369 (370)
T COG5276 360 NGGLSIIEYL 369 (370)
T ss_pred CCCEEEEEec
Confidence 8889999853
No 488
>PHA03098 kelch-like protein; Provisional
Probab=71.10 E-value=1.1e+02 Score=30.20 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCCEEEEEcCC--------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-----CcEEEEEcccc
Q 015198 227 DGLLLATASTR--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-----GTVHIFSLRVR 293 (411)
Q Consensus 227 ~g~~l~s~s~d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~ 293 (411)
++.+++.|+.+ .. +.+||..+++-...-...........+.+ ++++++.|+.+ +.|.+||..+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNI-VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccce-EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 56666776643 24 78889877653221111001111122222 66777777654 46888887765
Q ss_pred c
Q 015198 294 V 294 (411)
Q Consensus 294 ~ 294 (411)
+
T Consensus 514 ~ 514 (534)
T PHA03098 514 T 514 (534)
T ss_pred E
Confidence 3
No 489
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=70.08 E-value=28 Score=22.79 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=25.3
Q ss_pred EEEccCCEEEEEEeCCcEEEEEEecCCCCcEEEeee
Q 015198 365 AAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEY 400 (411)
Q Consensus 365 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~ 400 (411)
+.--.++.+.+.+.+|.+.||.+++..+ +..+.+-
T Consensus 24 m~ql~~N~Fav~~e~~~iKIfkyd~~tN-ei~L~KE 58 (63)
T PF14157_consen 24 MTQLEHNHFAVVDEDGQIKIFKYDEDTN-EITLKKE 58 (63)
T ss_dssp EEE-STTEEEEE-ETTEEEEEEEETTTT-EEEEEEE
T ss_pred eEEecCCEEEEEecCCeEEEEEeCCCCC-eEEEEEe
Confidence 3334558888889999999999999775 6666443
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.86 E-value=12 Score=37.18 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=29.6
Q ss_pred ceeEEEecC----CCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198 218 HIACFTLTL----DGLLLATASTRGTLIRIFNTVDGTRLQEVRR 257 (411)
Q Consensus 218 ~i~~l~~sp----~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~ 257 (411)
....++++. +..+|++.+.|+. +|+||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEecc
Confidence 345566665 6679999999999 99999999999776643
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=69.59 E-value=80 Score=32.39 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=74.9
Q ss_pred EEEEEcCCCCEEEEEe--C---CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE--
Q 015198 48 ISVSWNQDYGCFAAGT--S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-- 120 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~--d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd-- 120 (411)
.-+.|-.|.++.+++. . ..+++|..+..-.... ......-..+.|.|+|..+++-+.|.......|.++.
T Consensus 205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~s---ep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN 281 (1243)
T COG5290 205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSAS---EPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN 281 (1243)
T ss_pred eEEEEccCcceeeecchhcccccceeeecccccccccc---CCcccchhccccccCCceeeeeccCCCCCcceEEEEccC
Confidence 4567878888888877 2 3467776542111000 0112223346788988888876544222234566665
Q ss_pred -CCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198 121 -DHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA 190 (411)
Q Consensus 121 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (411)
++.|+.-........+..++|+-....++ ..+.+.+|-..+-.-.-.....-..+..+.|.|..++.+++
T Consensus 282 GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 282 GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred CcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEE
Confidence 22233222222345556666765555444 67889999866543322222222234567777776655554
No 492
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.29 E-value=96 Score=30.20 Aligned_cols=27 Identities=11% Similarity=-0.144 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCcEEEEe
Q 015198 45 IELISVSWNQDYGCFAAGT-SCGFRIYN 71 (411)
Q Consensus 45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~ 71 (411)
-.|..+..++.|..++..+ +|.+.++-
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3578888899999888777 77665544
No 493
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=68.51 E-value=1.2e+02 Score=29.68 Aligned_cols=230 Identities=11% Similarity=0.035 Sum_probs=109.3
Q ss_pred cCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCC-CEEEEEEeccCCe--EEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198 53 NQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSG-GFRIVEMLFRCNI--LALVGAGDNSQYPPTKVIIWDDHQSRCI 127 (411)
Q Consensus 53 s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~l~s~~~d~~~~d~~i~vwd~~~~~~~ 127 (411)
..++..++.+. +|.+....+..... +....+ +. .....++.+..++ .+++++.. .|+.+.-|....-+.+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~----gds~l~~~~~~~l~~~ 293 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEF----GDSQLLQISLSNLEVL 293 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESS----S-EEEEEEESESEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEec----CCcEEEEEeCCCcEEE
Confidence 45677788888 99988877765332 111212 11 2223344444554 55444433 2378888886666777
Q ss_pred EEEeecCceeEEEEcCC-----e------EEEE-----EcCeEEEEEcCCcee--eEEEeccCCCcceEEEccCC-CceE
Q 015198 128 GEFAFRSDVRSVKLSRD-----R------IVVV-----LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS-STSV 188 (411)
Q Consensus 128 ~~~~~~~~i~~~~~~~~-----~------~~~~-----~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (411)
..+..-++|.++++.+. . .+++ .+|.+++..-.-+-. ......-.....+..+.... +..+
T Consensus 294 ~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 294 DSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSY 373 (504)
T ss_dssp EEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSE
T ss_pred EeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceE
Confidence 77778889999988532 1 3444 578888875311111 11111112222333333221 1445
Q ss_pred EEEecCCCCeEEEEEc---CCcceEEEe-----ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC
Q 015198 189 LACPGLQRGQVRIEHF---GLNMIKLIN-----AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD 260 (411)
Q Consensus 189 l~~~g~~dg~i~i~~~---~~~~~~~~~-----~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~ 260 (411)
|+.+- .+.+..+-.. ....+..+. .....+.+-.+. +..++=.... . |++.+...++....+... .
T Consensus 374 lv~S~-~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~-i~l~~~~~~~~~~~w~~~-~ 447 (504)
T PF10433_consen 374 LVLSF-PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-G-IRLIDLEDGKLTQEWKPP-A 447 (504)
T ss_dssp EEEEE-SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-E-EEEEESSSTSEEEEEE-T-T
T ss_pred EEEEc-CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-e-EEEEECCCCeEEEEEeCC-C
Confidence 55532 3333333111 122222211 111222222222 3333333333 3 888888888877766543 3
Q ss_pred CcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198 261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV 295 (411)
Q Consensus 261 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 295 (411)
...|.+.+.. +.+++.+-.++.+..+.++....
T Consensus 448 ~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 448 GSIIVAASIN--DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp S---SEEEES--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred CCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCce
Confidence 3456666554 35677777788899999887664
No 494
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=68.13 E-value=91 Score=28.00 Aligned_cols=155 Identities=11% Similarity=0.103 Sum_probs=78.5
Q ss_pred eeEEEEcCCeEEEEE---------------cCeEEEEEcCCceeeEEEeccCCC----cceEEEccCC--C---ceEEEE
Q 015198 136 VRSVKLSRDRIVVVL---------------EHKIYVYSFVDLKLLHQIETLANL----RGLCCLSHHS--S---TSVLAC 191 (411)
Q Consensus 136 i~~~~~~~~~~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~--~---~~~l~~ 191 (411)
|..+.+.+.+++.+. .-+|.+||+.+.+.++++..+... .....+..+. . ..++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 556666666665551 127889999999998888654321 1222332222 1 123333
Q ss_pred ecCCCCeEEEEEcCCcceEEEecc--------------------ccceeEEEecC---CCCEEEEEcCCCeEEEEEECCC
Q 015198 192 PGLQRGQVRIEHFGLNMIKLINAH--------------------DSHIACFTLTL---DGLLLATASTRGTLIRIFNTVD 248 (411)
Q Consensus 192 ~g~~dg~i~i~~~~~~~~~~~~~~--------------------~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~ 248 (411)
+-...+-|.+++........+..+ ...+..++.+| +|+.|.-....+. ++|.+.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T 160 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPT 160 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEH
Confidence 333344555555444222222111 12255566654 6666665554442 3443322
Q ss_pred -----C---------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198 249 -----G---------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV 294 (411)
Q Consensus 249 -----~---------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~ 294 (411)
. +.+..+-. .......++++++|.++++--..+.|..|+..+.-
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~ 218 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGD--KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPY 218 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB
T ss_pred HHhhCccccccccccccceeccc--cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCc
Confidence 1 01122211 11245668888999999898899999999988743
No 495
>PHA02790 Kelch-like protein; Provisional
Probab=67.68 E-value=1.3e+02 Score=29.46 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-----CcEEEEEccccc
Q 015198 226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV 294 (411)
Q Consensus 226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~ 294 (411)
-+|++.+.| |. +.+||..+++-...-...........+. -+|+..+.|+.+ ..|..||..+++
T Consensus 406 ~~~~IYv~G---G~-~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 406 FGRRLFLVG---RN-AEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ECCEEEEEC---Cc-eEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 356666666 35 7788887665332111110111222222 366777777754 357788877653
No 496
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.47 E-value=1.2e+02 Score=28.92 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=74.8
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEecCCCcce--EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198 48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR 125 (411)
Q Consensus 48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~ 125 (411)
+.+-|...++.|.+...|.+.=|.......- ..... .....+.++.|++|..+++.--.+ +.|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm-~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM-DDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee-cCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCc
Confidence 4455555566666555777777776543321 22222 233488999999999999998777 999999964444
Q ss_pred EEEEEe-----ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCc-eeeEEEeccCC
Q 015198 126 CIGEFA-----FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLAN 173 (411)
Q Consensus 126 ~~~~~~-----~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~ 173 (411)
....+. ....|....|.....+.+ .+..+.+|..... +.++..+.+.-
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~ 154 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNL 154 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhccc
Confidence 333322 234588999988765555 7888888876432 23333344443
No 497
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=66.39 E-value=89 Score=32.24 Aligned_cols=72 Identities=26% Similarity=0.355 Sum_probs=49.0
Q ss_pred ccceeEEEec----CCCC--EEEEEcCCCeEEEEEECCCCc-----eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198 216 DSHIACFTLT----LDGL--LLATASTRGTLIRIFNTVDGT-----RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT 284 (411)
Q Consensus 216 ~~~i~~l~~s----p~g~--~l~s~s~dg~~I~vwd~~~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~ 284 (411)
....+.|+.+ .++. .|+.|+++|+.+++-.+.... .+.++..-.+..+|..|.+++....|++|+..|.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 5566666665 4555 467899999855565554411 3445544335578999999998888999998875
Q ss_pred EEE
Q 015198 285 VHI 287 (411)
Q Consensus 285 I~v 287 (411)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 443
No 498
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.78 E-value=17 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=15.9
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198 264 IYSIALSPNVQWLAVASDKGTVHIF 288 (411)
Q Consensus 264 v~~l~~spdg~~l~s~s~dg~I~vw 288 (411)
...++.+++|+++++=.....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4566777777766666666656554
No 499
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=62.62 E-value=7.9 Score=38.12 Aligned_cols=79 Identities=24% Similarity=0.272 Sum_probs=54.2
Q ss_pred cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe-------C---CCCCcceEEEEeCCCC
Q 015198 204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR-------R---GVDRAEIYSIALSPNV 273 (411)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~-------~---~~~~~~v~~l~~spdg 273 (411)
.....+..++.|..++..++|.+.|.++++++-.|..|.++.+. +.+.+.. . ......|..++|+...
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim--et~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s 380 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM--ETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVS 380 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec--cccccccccccccccchhcchHHHHHHHhhhhhc
Confidence 33456778899999999999999999999999888656655432 2221111 1 1112245668888888
Q ss_pred CEEEEEeCCCc
Q 015198 274 QWLAVASDKGT 284 (411)
Q Consensus 274 ~~l~s~s~dg~ 284 (411)
++++.++.+|.
T Consensus 381 ~~r~~gsc~Ge 391 (788)
T KOG2109|consen 381 TIRTAGSCEGE 391 (788)
T ss_pred ceEeecccCCC
Confidence 88888887663
No 500
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=60.93 E-value=1e+02 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=30.9
Q ss_pred CeEEEEECC--CCcEEEEEeecCceeEEEEcCCeEEEE
Q 015198 114 TKVIIWDDH--QSRCIGEFAFRSDVRSVKLSRDRIVVV 149 (411)
Q Consensus 114 ~~i~vwd~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 149 (411)
+.|.+|++. ..+.+..+..-+.|..+.++..|.+++
T Consensus 38 ~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv 75 (215)
T PF14761_consen 38 CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV 75 (215)
T ss_pred CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence 899999987 445677777779999999999999998
Done!