Query 015199
Match_columns 411
No_of_seqs 258 out of 882
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1609 Protein involved in mR 99.8 4.7E-20 1E-24 177.0 7.4 208 189-396 68-282 (323)
2 PHA02825 LAP/PHD finger-like p 99.7 1.5E-16 3.3E-21 144.8 7.4 60 193-255 2-61 (162)
3 smart00744 RINGv The RING-vari 99.6 6.3E-17 1.4E-21 121.0 3.4 49 201-249 1-49 (49)
4 PHA02862 5L protein; Provision 99.6 9.6E-16 2.1E-20 137.8 5.7 55 199-256 2-56 (156)
5 PF12906 RINGv: RING-variant d 99.6 2.3E-16 5E-21 117.1 0.8 47 202-248 1-47 (47)
6 COG5183 SSM4 Protein involved 99.6 2.8E-15 6E-20 161.5 8.9 66 198-263 11-76 (1175)
7 KOG3053 Uncharacterized conser 99.3 1.3E-12 2.8E-17 126.9 3.0 63 193-255 14-84 (293)
8 KOG4628 Predicted E3 ubiquitin 98.2 1.2E-06 2.6E-11 89.1 3.7 49 200-254 230-279 (348)
9 PF13639 zf-RING_2: Ring finge 97.8 6.1E-06 1.3E-10 59.4 1.2 43 200-249 1-44 (44)
10 PHA02929 N1R/p28-like protein; 97.5 6.7E-05 1.4E-09 73.1 3.3 52 197-255 172-229 (238)
11 COG5540 RING-finger-containing 97.3 0.00017 3.6E-09 72.7 3.9 51 196-253 320-372 (374)
12 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00013 2.7E-09 75.2 3.1 55 191-252 279-344 (491)
13 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00037 8.1E-09 56.0 2.8 44 199-249 19-73 (73)
14 PLN03208 E3 ubiquitin-protein 96.9 0.00086 1.9E-08 63.7 4.2 50 198-254 17-80 (193)
15 PF13920 zf-C3HC4_3: Zinc fing 96.9 0.00053 1.1E-08 50.7 1.9 48 198-254 1-49 (50)
16 PF12861 zf-Apc11: Anaphase-pr 96.9 0.0011 2.5E-08 55.6 4.0 52 199-254 21-83 (85)
17 cd00162 RING RING-finger (Real 96.8 0.0011 2.5E-08 45.4 3.1 45 201-252 1-45 (45)
18 PF11793 FANCL_C: FANCL C-term 96.7 0.0004 8.6E-09 55.6 0.1 52 199-253 2-66 (70)
19 KOG0823 Predicted E3 ubiquitin 96.6 0.0023 5E-08 62.2 4.5 58 195-259 43-104 (230)
20 PF09679 TraQ: Type-F conjugat 96.6 0.0021 4.5E-08 54.3 3.5 47 345-397 16-62 (93)
21 KOG0802 E3 ubiquitin ligase [P 96.5 0.0015 3.3E-08 69.8 2.6 51 195-252 287-340 (543)
22 smart00184 RING Ring finger. E 96.4 0.0031 6.6E-08 41.6 2.7 39 202-248 1-39 (39)
23 KOG1493 Anaphase-promoting com 96.2 0.0024 5.2E-08 53.0 1.5 50 201-254 22-82 (84)
24 PHA02926 zinc finger-like prot 96.1 0.0046 1E-07 60.3 3.5 55 196-255 167-232 (242)
25 COG5219 Uncharacterized conser 96.1 0.0018 3.8E-08 73.1 0.3 55 197-254 1467-1524(1525)
26 KOG4265 Predicted E3 ubiquitin 95.7 0.014 3E-07 60.0 5.0 54 194-255 285-338 (349)
27 PF00097 zf-C3HC4: Zinc finger 95.6 0.0099 2.1E-07 41.7 2.6 40 202-248 1-41 (41)
28 KOG0828 Predicted E3 ubiquitin 94.8 0.021 4.6E-07 61.0 3.1 57 191-253 563-634 (636)
29 smart00504 Ubox Modified RING 94.5 0.041 9E-07 41.5 3.3 45 200-253 2-46 (63)
30 PF13923 zf-C3HC4_2: Zinc fing 94.3 0.029 6.3E-07 39.4 2.0 38 202-248 1-39 (39)
31 COG5194 APC11 Component of SCF 94.2 0.03 6.5E-07 47.0 2.2 27 226-254 56-82 (88)
32 KOG0317 Predicted E3 ubiquitin 93.9 0.069 1.5E-06 53.7 4.3 55 191-254 231-285 (293)
33 KOG0827 Predicted E3 ubiquitin 93.8 0.043 9.3E-07 57.3 2.9 46 199-249 4-52 (465)
34 TIGR00599 rad18 DNA repair pro 93.4 0.053 1.2E-06 56.7 2.7 48 197-253 24-71 (397)
35 PF14634 zf-RING_5: zinc-RING 92.5 0.11 2.5E-06 37.5 2.6 42 202-250 2-44 (44)
36 PF14570 zf-RING_4: RING/Ubox 92.1 0.092 2E-06 39.9 1.8 46 202-253 1-48 (48)
37 KOG0320 Predicted E3 ubiquitin 92.1 0.44 9.4E-06 45.4 6.6 59 188-253 120-178 (187)
38 KOG0804 Cytoplasmic Zn-finger 89.6 0.11 2.4E-06 55.1 0.3 50 195-253 171-222 (493)
39 KOG0825 PHD Zn-finger protein 87.3 0.43 9.3E-06 53.9 2.9 51 198-255 122-173 (1134)
40 KOG1645 RING-finger-containing 86.6 0.53 1.1E-05 49.7 3.0 63 197-264 2-70 (463)
41 KOG1734 Predicted RING-contain 86.6 0.15 3.3E-06 51.2 -0.9 52 197-253 222-281 (328)
42 KOG1785 Tyrosine kinase negati 85.6 0.33 7.1E-06 51.2 0.9 52 197-255 367-418 (563)
43 PF05883 Baculo_RING: Baculovi 85.4 0.38 8.3E-06 43.7 1.1 42 198-239 25-68 (134)
44 PF07895 DUF1673: Protein of u 85.1 9.1 0.0002 36.7 10.3 33 365-403 151-183 (205)
45 PF15227 zf-C3HC4_4: zinc fing 83.9 0.7 1.5E-05 33.5 1.7 40 202-248 1-42 (42)
46 KOG2930 SCF ubiquitin ligase, 82.9 0.76 1.7E-05 40.4 1.8 27 226-254 83-109 (114)
47 COG5175 MOT2 Transcriptional r 81.8 1 2.2E-05 46.8 2.6 51 197-253 12-64 (480)
48 PF13445 zf-RING_UBOX: RING-ty 80.5 1.1 2.4E-05 33.1 1.7 40 202-246 1-43 (43)
49 PLN02638 cellulose synthase A 80.4 1.9 4.2E-05 50.3 4.4 50 198-253 16-70 (1079)
50 KOG4445 Uncharacterized conser 79.5 0.77 1.7E-05 47.0 0.8 49 200-253 116-186 (368)
51 KOG2177 Predicted E3 ubiquitin 78.3 0.98 2.1E-05 40.9 1.0 49 193-250 7-55 (386)
52 KOG0802 E3 ubiquitin ligase [P 77.5 1.2 2.7E-05 48.0 1.7 54 188-254 468-521 (543)
53 PF04564 U-box: U-box domain; 77.4 1.3 2.9E-05 35.2 1.5 48 199-254 4-51 (73)
54 PF07800 DUF1644: Protein of u 77.1 3.1 6.8E-05 39.0 4.0 54 198-255 1-93 (162)
55 KOG2164 Predicted E3 ubiquitin 76.3 68 0.0015 35.2 14.1 58 199-263 186-249 (513)
56 TIGR00570 cdk7 CDK-activating 74.4 3 6.6E-05 42.6 3.4 50 199-254 3-55 (309)
57 PLN02195 cellulose synthase A 74.2 2.9 6.4E-05 48.4 3.6 51 197-253 4-59 (977)
58 COG5236 Uncharacterized conser 73.5 5.3 0.00011 41.9 4.9 59 193-258 55-113 (493)
59 PLN02189 cellulose synthase 72.6 2.5 5.4E-05 49.3 2.6 51 198-253 33-87 (1040)
60 KOG0801 Predicted E3 ubiquitin 71.9 2.1 4.6E-05 40.6 1.5 27 195-221 173-200 (205)
61 PLN02436 cellulose synthase A 71.0 3.1 6.6E-05 48.7 2.8 51 198-253 35-89 (1094)
62 COG5034 TNG2 Chromatin remodel 70.6 2.7 5.8E-05 42.2 1.9 30 220-251 241-270 (271)
63 PLN02400 cellulose synthase 69.7 2.9 6.4E-05 48.9 2.3 50 198-253 35-89 (1085)
64 KOG1039 Predicted E3 ubiquitin 69.4 3.6 7.7E-05 42.7 2.6 54 197-255 159-223 (344)
65 COG5432 RAD18 RING-finger-cont 69.1 2.2 4.8E-05 43.6 1.1 48 198-254 24-71 (391)
66 PF10367 Vps39_2: Vacuolar sor 68.5 1.8 3.9E-05 35.5 0.3 33 198-235 77-109 (109)
67 PF10272 Tmpp129: Putative tra 67.8 4.7 0.0001 42.0 3.1 36 217-255 307-353 (358)
68 KOG1952 Transcription factor N 65.8 5.1 0.00011 45.9 3.1 60 197-259 189-253 (950)
69 KOG4692 Predicted E3 ubiquitin 61.4 4.8 0.0001 42.3 1.8 49 197-254 420-468 (489)
70 KOG1002 Nucleotide excision re 60.9 4.5 9.7E-05 44.5 1.5 53 194-253 531-586 (791)
71 KOG3970 Predicted E3 ubiquitin 60.8 8.1 0.00017 38.5 3.1 52 197-253 48-105 (299)
72 PLN02915 cellulose synthase A 59.9 7.9 0.00017 45.4 3.4 50 198-253 14-68 (1044)
73 PF08746 zf-RING-like: RING-li 58.6 6 0.00013 29.0 1.4 22 227-248 22-43 (43)
74 COG5574 PEX10 RING-finger-cont 58.0 10 0.00022 38.3 3.3 50 196-253 212-262 (271)
75 PF14569 zf-UDP: Zinc-binding 57.1 11 0.00024 31.7 2.8 52 197-254 7-63 (80)
76 KOG1973 Chromatin remodeling p 56.8 3.9 8.5E-05 40.7 0.2 36 218-253 234-270 (274)
77 PRK12585 putative monovalent c 55.8 40 0.00087 32.7 6.8 43 287-329 4-49 (197)
78 KOG0956 PHD finger protein AF1 55.8 5.4 0.00012 45.0 1.1 59 197-255 115-184 (900)
79 PF05290 Baculo_IE-1: Baculovi 55.3 8.7 0.00019 35.3 2.2 55 198-254 79-133 (140)
80 KOG4172 Predicted E3 ubiquitin 55.0 6.6 0.00014 31.2 1.2 50 199-255 7-56 (62)
81 KOG0287 Postreplication repair 54.3 4.9 0.00011 42.0 0.5 46 199-253 23-68 (442)
82 KOG1428 Inhibitor of type V ad 53.7 12 0.00026 45.8 3.4 56 195-255 3482-3546(3738)
83 PRK13727 conjugal transfer pil 53.5 14 0.0003 30.9 2.9 51 345-403 16-66 (80)
84 PF11241 DUF3043: Protein of u 52.2 32 0.0007 32.6 5.5 51 354-404 113-163 (170)
85 PF03616 Glt_symporter: Sodium 52.0 1.2E+02 0.0025 31.6 10.0 48 346-393 309-357 (368)
86 PF01146 Caveolin: Caveolin; 51.6 44 0.00096 30.9 6.2 33 316-353 74-106 (148)
87 KOG3268 Predicted E3 ubiquitin 50.9 13 0.00029 35.8 2.8 57 197-253 163-228 (234)
88 TIGR02741 TraQ type-F conjugat 49.8 19 0.00041 30.1 3.1 51 345-403 16-66 (80)
89 PF10947 DUF2628: Protein of u 49.4 75 0.0016 26.8 6.9 57 341-398 51-107 (108)
90 PRK09477 napH quinol dehydroge 48.8 8.5 0.00018 37.9 1.2 59 307-365 32-90 (271)
91 PF14012 DUF4229: Protein of u 48.0 18 0.00039 29.2 2.7 53 345-404 1-59 (69)
92 KOG0824 Predicted E3 ubiquitin 47.1 14 0.0003 38.0 2.4 46 198-253 6-53 (324)
93 KOG2568 Predicted membrane pro 46.6 92 0.002 34.3 8.5 40 364-404 381-420 (518)
94 COG4095 Uncharacterized conser 45.1 1.5E+02 0.0031 25.6 7.8 73 292-366 8-86 (89)
95 KOG0955 PHD finger protein BR1 44.6 7.7 0.00017 45.6 0.2 56 194-251 214-269 (1051)
96 PRK11618 inner membrane ABC tr 43.6 1.6E+02 0.0036 29.3 9.4 12 368-379 84-95 (317)
97 TIGR02163 napH_ ferredoxin-typ 42.4 13 0.00029 36.3 1.4 59 307-365 25-83 (255)
98 PF12811 BaxI_1: Bax inhibitor 42.3 74 0.0016 32.2 6.6 18 381-398 249-266 (274)
99 COG4129 Predicted membrane pro 42.1 62 0.0013 33.5 6.2 52 314-371 52-103 (332)
100 KOG1941 Acetylcholine receptor 41.6 8.5 0.00018 41.0 -0.1 51 195-250 361-413 (518)
101 PRK05978 hypothetical protein; 41.4 1.6E+02 0.0034 27.3 8.1 19 235-255 47-65 (148)
102 KOG4323 Polycomb-like PHD Zn-f 41.0 38 0.00081 36.7 4.6 59 195-256 164-229 (464)
103 KOG3005 GIY-YIG type nuclease 38.9 17 0.00037 36.8 1.6 54 200-253 183-243 (276)
104 KOG2325 Predicted transporter/ 37.6 48 0.001 36.0 4.8 70 300-369 409-480 (488)
105 PF07331 TctB: Tripartite tric 37.2 1.5E+02 0.0033 25.5 7.0 29 341-370 111-139 (141)
106 PF11674 DUF3270: Protein of u 37.2 71 0.0015 27.4 4.8 24 367-390 62-85 (90)
107 PF06937 EURL: EURL protein; 35.9 36 0.00079 34.6 3.3 56 176-240 10-69 (285)
108 PRK07668 hypothetical protein; 35.6 1.3E+02 0.0029 30.1 7.2 107 286-393 73-196 (254)
109 COG0670 Integral membrane prot 34.5 3.3E+02 0.0072 26.8 9.6 77 313-391 82-164 (233)
110 TIGR01129 secD protein-export 34.1 1.2E+02 0.0025 32.0 6.8 44 358-401 285-328 (397)
111 PF06123 CreD: Inner membrane 33.8 2.2E+02 0.0048 30.6 8.9 57 310-370 345-401 (430)
112 PRK14585 pgaD putative PGA bio 33.7 1.8E+02 0.004 26.8 7.2 23 344-369 57-79 (137)
113 COG2246 Predicted membrane pro 33.5 75 0.0016 28.6 4.7 47 356-402 92-138 (139)
114 PF00689 Cation_ATPase_C: Cati 32.9 2.8E+02 0.006 24.7 8.2 54 343-399 126-181 (182)
115 PF04641 Rtf2: Rtf2 RING-finge 31.8 42 0.00091 33.0 3.0 55 194-256 108-164 (260)
116 PF13571 DUF4133: Domain of un 31.8 76 0.0016 27.6 4.2 47 342-390 16-62 (96)
117 KOG0956 PHD finger protein AF1 31.1 25 0.00055 39.9 1.5 54 200-254 6-74 (900)
118 PF10810 DUF2545: Protein of u 31.1 1.5E+02 0.0033 24.8 5.6 13 295-307 9-21 (80)
119 COG0842 ABC-type multidrug tra 29.9 3.6E+02 0.0079 24.5 8.7 47 311-365 115-161 (286)
120 PRK05812 secD preprotein trans 29.0 1.6E+02 0.0034 32.2 6.9 46 355-400 367-412 (498)
121 PF02592 DUF165: Uncharacteriz 28.9 2.5E+02 0.0055 25.1 7.3 31 371-401 66-96 (145)
122 COG0342 SecD Preprotein transl 28.7 46 0.001 36.2 2.9 10 389-398 411-420 (506)
123 KOG0510 Ankyrin repeat protein 28.5 1.1E+02 0.0023 35.8 5.7 29 355-386 651-679 (929)
124 KOG2846 Predicted membrane pro 27.9 52 0.0011 34.2 3.0 48 357-404 29-76 (328)
125 PRK12911 bifunctional preprote 27.5 1.1E+02 0.0023 37.4 5.8 58 345-402 933-990 (1403)
126 PRK01766 multidrug efflux prot 27.4 4.2E+02 0.0091 27.1 9.5 49 352-401 398-446 (456)
127 TIGR00210 gltS sodium--glutama 27.3 5.1E+02 0.011 27.5 10.1 47 348-394 309-356 (398)
128 KOG4443 Putative transcription 27.2 26 0.00056 39.4 0.7 33 215-249 34-75 (694)
129 PF04418 DUF543: Domain of unk 27.2 51 0.0011 27.3 2.3 8 381-388 59-66 (75)
130 TIGR01129 secD protein-export 27.1 85 0.0018 33.0 4.4 24 354-377 259-282 (397)
131 KOG3899 Uncharacterized conser 26.8 39 0.00085 35.0 1.8 34 219-255 323-367 (381)
132 PF03176 MMPL: MMPL family; I 26.8 2.2E+02 0.0048 28.1 7.1 17 380-396 209-225 (333)
133 PF15361 RIC3: Resistance to i 26.6 67 0.0014 29.7 3.2 21 347-370 88-108 (152)
134 PRK04164 hypothetical protein; 26.4 86 0.0019 29.6 3.9 44 342-398 46-89 (181)
135 PF06459 RR_TM4-6: Ryanodine R 26.3 1.9E+02 0.0041 29.3 6.6 34 339-372 166-199 (274)
136 PRK12592 putative monovalent c 26.0 2.2E+02 0.0048 25.7 6.3 41 286-326 5-48 (126)
137 KOG4159 Predicted E3 ubiquitin 25.2 25 0.00054 37.3 0.1 50 197-255 82-131 (398)
138 KOG2660 Locus-specific chromos 24.8 38 0.00082 35.2 1.4 51 197-255 13-63 (331)
139 KOG2082 K+/Cl- cotransporter K 24.5 3E+02 0.0066 32.4 8.2 80 307-401 560-648 (1075)
140 PF14362 DUF4407: Domain of un 24.4 2.1E+02 0.0046 28.3 6.5 13 319-331 46-58 (301)
141 TIGR00955 3a01204 The Eye Pigm 24.1 3.9E+02 0.0084 29.4 9.0 22 318-339 441-462 (617)
142 PF06170 DUF983: Protein of un 23.8 3.7E+02 0.0081 22.6 6.9 14 242-255 8-21 (86)
143 PRK14584 hmsS hemin storage sy 23.6 1.8E+02 0.0039 27.3 5.4 25 343-370 65-89 (153)
144 PF13894 zf-C2H2_4: C2H2-type 23.1 41 0.0009 19.8 0.8 11 244-254 2-12 (24)
145 PF02932 Neur_chan_memb: Neuro 22.9 4.7E+02 0.01 22.1 9.5 12 349-360 71-82 (237)
146 PF05297 Herpes_LMP1: Herpesvi 22.1 30 0.00064 35.8 0.0 32 293-328 31-62 (381)
147 PF10131 PTPS_related: 6-pyruv 21.9 5.3E+02 0.012 28.8 9.5 40 353-392 126-165 (616)
148 PRK10929 putative mechanosensi 21.6 3.9E+02 0.0084 32.3 8.7 15 357-371 714-728 (1109)
149 TIGR00833 actII Transport prot 21.5 3.8E+02 0.0081 31.1 8.5 19 380-398 239-257 (910)
150 KOG3676 Ca2+-permeable cation 21.1 3E+02 0.0066 31.9 7.5 28 342-369 544-571 (782)
151 PF12263 DUF3611: Protein of u 21.0 4.6E+02 0.0099 25.1 7.7 37 346-382 99-135 (183)
152 KOG1965 Sodium/hydrogen exchan 21.0 3.6E+02 0.0078 30.3 7.8 35 344-378 261-298 (575)
153 COG1320 MnhG Multisubunit Na+/ 20.7 4.2E+02 0.0091 23.5 6.9 81 292-381 8-91 (113)
154 PF10571 UPF0547: Uncharacteri 20.7 46 0.001 22.2 0.7 12 242-253 14-25 (26)
155 PF15013 CCSMST1: CCSMST1 fami 20.4 57 0.0012 27.3 1.3 22 286-307 29-52 (77)
156 PF10958 DUF2759: Protein of u 20.4 3.1E+02 0.0068 21.5 5.2 42 294-337 3-44 (52)
157 PF07343 DUF1475: Protein of u 20.0 2.3E+02 0.005 28.6 5.6 29 342-370 74-102 (254)
No 1
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.80 E-value=4.7e-20 Score=176.97 Aligned_cols=208 Identities=26% Similarity=0.398 Sum_probs=145.9
Q ss_pred CCCCccccCCCCeeeEecccCCCCC--eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccceeeeccCccc
Q 015199 189 ENNDEEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMSSSA 266 (411)
Q Consensus 189 e~~~ed~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~Pv~llr~~~~~ 266 (411)
+++.++.+.++..||||+++.++.+ +++.||.|+|++++||+.|+++|+..+++..||+|++.|.+..+...+.....
T Consensus 68 ~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~ 147 (323)
T KOG1609|consen 68 EESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVIS 147 (323)
T ss_pred CCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehh
Confidence 4566667777899999998765444 78999999999999999999999999999999999999998866654444322
Q ss_pred ccccccccccccccccccccccceeehhhhHHHHHHHHHHHHhhccccchhhHhhh-hhHHHHHHHHHHHHHHHhhHHHH
Q 015199 267 QRDNRRNHSQQTMHSRSVSAWQDFVVLVLISTICYFFFLEQILIHDLKTQAIVLAA-PFAFTLGILSSIFAVILAIREYI 345 (411)
Q Consensus 267 q~~~r~~~~~~~~~~~~~~~Wq~f~VLVliS~l~yf~fleqLlv~~~~t~Ai~isl-pfs~vlgllssi~~~~~~~r~yi 345 (411)
....+...............|..+.+.+.+..+++.++.+..+...++.....++. +..+.+|++...+.+.+....|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (323)
T KOG1609|consen 148 KVRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYI 227 (323)
T ss_pred hhhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHH
Confidence 21111111111100012234444555555666777777776544444333233333 56677788888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHH--hhhccceeeehhHHHHHh
Q 015199 346 WTYAALEFALVAVAVHLLYTILHL--KAIYAILLS--SLLGFGAAMSLNSLYIQY 396 (411)
Q Consensus 346 W~yA~~qf~lv~l~~~ify~~l~~--~~v~ai~la--~~~gfgi~~~~~~~~~~~ 396 (411)
|++....+.++++++.+|...... .+++..++. ...|++++.+...+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T KOG1609|consen 228 FILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTPLYIVS 282 (323)
T ss_pred HHHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccceeeecc
Confidence 999999999999999999877776 233333333 388999999888888775
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.66 E-value=1.5e-16 Score=144.79 Aligned_cols=60 Identities=30% Similarity=0.728 Sum_probs=53.0
Q ss_pred ccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
++.++.++.||||+++++ ....||+|+|++++||++||++|+..+++..||+|+++|...
T Consensus 2 ~~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456678899999997643 356899999999999999999999999999999999999865
No 3
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.65 E-value=6.3e-17 Score=121.01 Aligned_cols=49 Identities=51% Similarity=1.187 Sum_probs=45.8
Q ss_pred eeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCc
Q 015199 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (411)
Q Consensus 201 ~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk 249 (411)
+||||++.+++++++++||+|+|+++|||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999666778999999999999999999999999999999999996
No 4
>PHA02862 5L protein; Provisional
Probab=99.59 E-value=9.6e-16 Score=137.81 Aligned_cols=55 Identities=27% Similarity=0.759 Sum_probs=49.0
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccc
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~P 256 (411)
.+.||||+++++++ ..||+|+|++++||++||.+|++.+++.+||+|+++|..-+
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 46899999876443 69999999999999999999999999999999999998543
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.59 E-value=2.3e-16 Score=117.07 Aligned_cols=47 Identities=47% Similarity=1.128 Sum_probs=38.9
Q ss_pred eeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCC
Q 015199 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (411)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElC 248 (411)
||||+++++++++|+.||.|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999987776789999999999999999999999999999999998
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.58 E-value=2.8e-15 Score=161.49 Aligned_cols=66 Identities=27% Similarity=0.699 Sum_probs=60.4
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccceeeeccC
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMS 263 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~Pv~llr~~ 263 (411)
+.+.||||++++.+|+||.+||+|.|+++|+|++||..|+..+++++||+||++|+.--++.+.+|
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP 76 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMP 76 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCC
Confidence 348899999998889999999999999999999999999999999999999999998777766655
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.3e-12 Score=126.85 Aligned_cols=63 Identities=29% Similarity=0.664 Sum_probs=53.4
Q ss_pred ccccCCCCeeeEecccCCCCC--eecccccccCCccccCHHHHHHHHHhcC------CCccCCCcceeccc
Q 015199 193 EEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKG------NKNCEVCGKEVQNL 255 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~s~------~~~CElCk~~y~~~ 255 (411)
.+..+.|+.||||+..+|+.. .++.||.|+|+.|+||+.||.+|+.+|. ...|+.|.++|..+
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 466788999999997665432 3789999999999999999999998874 47999999999854
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.2e-06 Score=89.11 Aligned_cols=49 Identities=31% Similarity=0.804 Sum_probs=42.7
Q ss_pred CeeeEecccCCCCCee-cccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 200 AVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 200 ~~CRICl~~~eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
..|-||+|++++|+.+ ++||+. .+|..|++.||... ...|++||++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H-----~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSH-----KFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCC-----chhhccchhhHhhc-CccCCCCCCcCCC
Confidence 8999999999988876 699994 78999999999886 4579999998764
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.84 E-value=6.1e-06 Score=59.40 Aligned_cols=43 Identities=30% Similarity=0.885 Sum_probs=33.1
Q ss_pred CeeeEecccCCC-CCeecccccccCCccccCHHHHHHHHHhcCCCccCCCc
Q 015199 200 AVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (411)
Q Consensus 200 ~~CRICl~~~ee-g~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk 249 (411)
+.|-||+++.++ +....++|. +.+|.+|+.+|++.+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 369999988754 345677875 699999999999885 4999996
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.50 E-value=6.7e-05 Score=73.11 Aligned_cols=52 Identities=19% Similarity=0.564 Sum_probs=39.1
Q ss_pred CCCCeeeEecccCCCCC------eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGN------TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~------~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
..+..|-||++...+.+ ....+|. |.+|.+|+.+|+.. +.+|++|+..+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 34578999998643322 2345676 58999999999976 45999999998854
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00017 Score=72.69 Aligned_cols=51 Identities=22% Similarity=0.610 Sum_probs=40.7
Q ss_pred cCCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHH-hcCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFS-TKGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~-~s~~~~CElCk~~y~ 253 (411)
.+.+.+|-||++....++. .++||+. -+|..|+++|+. .+ ..|++|+++..
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H-----~FH~~Cv~kW~~~y~--~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDH-----RFHVGCVDKWLLGYS--NKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCc-----eechhHHHHHHhhhc--ccCCccCCCCC
Confidence 4456899999987655554 5799984 799999999997 54 49999998864
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00013 Score=75.22 Aligned_cols=55 Identities=22% Similarity=0.763 Sum_probs=42.4
Q ss_pred CCccccCCCCeeeEecccC-CCC----------CeecccccccCCccccCHHHHHHHHHhcCCCccCCCccee
Q 015199 191 NDEEIAEEEAVCRICLDIC-EEG----------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (411)
Q Consensus 191 ~~ed~~eee~~CRICl~~~-eeg----------~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y 252 (411)
.+|.-..++..|-||+|+. +.+ .|-.+||. +..|-+||+.|+..++ +|+||+.+.
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 3445567788999999883 222 24578997 4899999999998865 999999985
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.09 E-value=0.00037 Score=55.97 Aligned_cols=44 Identities=23% Similarity=0.695 Sum_probs=30.2
Q ss_pred CCeeeEecccCCC----------CCee-cccccccCCccccCHHHHHHHHHhcCCCccCCCc
Q 015199 199 EAVCRICLDICEE----------GNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (411)
Q Consensus 199 e~~CRICl~~~ee----------g~~L-i~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk 249 (411)
++.|-||++...+ +-++ ..+|. +.+|..||.+|++.+. +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 3449999976521 1222 35676 5899999999997654 999996
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.94 E-value=0.00086 Score=63.73 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc--------------CCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------------GNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s--------------~~~~CElCk~~y~~ 254 (411)
++-.|-||++... ++.+.+|. |.++..|+.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~CpICld~~~--dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR--DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC--CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4578999998643 57888986 488999999998632 34689999999863
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.90 E-value=0.00053 Score=50.67 Aligned_cols=48 Identities=29% Similarity=0.733 Sum_probs=36.9
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccc-cCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
|+..|.||++.. .+....||.. . +...|+.+|++ ....|++|+.++..
T Consensus 1 ~~~~C~iC~~~~--~~~~~~pCgH-----~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLPCGH-----LCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEETTCE-----EEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred CcCCCccCCccC--CceEEeCCCC-----hHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 356799999763 3578899984 5 89999999998 56799999998764
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.89 E-value=0.0011 Score=55.57 Aligned_cols=52 Identities=27% Similarity=0.661 Sum_probs=37.3
Q ss_pred CCeeeEecccCCC--------CC--eecccccccCCccccCHHHHHHHHHhc-CCCccCCCcceecc
Q 015199 199 EAVCRICLDICEE--------GN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~ee--------g~--~Li~PC~CkGslk~VH~~CL~kWl~~s-~~~~CElCk~~y~~ 254 (411)
+++|-||+...+. |+ +++ =+.|. +.+|..|+.+|+... .+..|++|+++++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 6679999865431 22 332 23453 589999999999874 46899999999874
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.84 E-value=0.0011 Score=45.35 Aligned_cols=45 Identities=22% Similarity=0.770 Sum_probs=33.1
Q ss_pred eeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCccee
Q 015199 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (411)
Q Consensus 201 ~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y 252 (411)
.|-||++... ......+|. +.+|..|+.+|+.. ++..|++|+..+
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh-CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 4889987652 223345586 36899999999986 567899999753
No 18
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.73 E-value=0.0004 Score=55.60 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=24.2
Q ss_pred CCeeeEecccCC-CCCeecccc---cccCCccccCHHHHHHHHHhcC---------CCccCCCcceec
Q 015199 199 EAVCRICLDICE-EGNTLKMEC---SCKGALRLVHEECAIRWFSTKG---------NKNCEVCGKEVQ 253 (411)
Q Consensus 199 e~~CRICl~~~e-eg~~Li~PC---~CkGslk~VH~~CL~kWl~~s~---------~~~CElCk~~y~ 253 (411)
+..|.||+.... +++....-| .|+ +.+|..||.+||.... .-.|+.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999997643 333223334 565 4899999999997631 136999999876
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0023 Score=62.21 Aligned_cols=58 Identities=29% Similarity=0.602 Sum_probs=46.3
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcC-CCccCCCcceec---ccceee
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQ---NLPVTL 259 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~-~~~CElCk~~y~---~~Pv~l 259 (411)
.+...-.|-||++.. .++.++.|. |++==-||-||+.... .+.|++||.++. .+|+|-
T Consensus 43 ~~~~~FdCNICLd~a--kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA--KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCCceeeeeecccc--CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 556678899999864 468999998 3677799999999875 577899999996 467664
No 20
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=96.60 E-value=0.0021 Score=54.25 Aligned_cols=47 Identities=13% Similarity=0.320 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhh
Q 015199 345 IWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYF 397 (411)
Q Consensus 345 iW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~ 397 (411)
+|+++.- ++.||+.++++.+|.+|++||++.|+|++|++-+=+++-+
T Consensus 16 ~wv~~lG------~wfHIvarLV~~~P~mA~~LAeiia~~Lvl~GgYrILda~ 62 (93)
T PF09679_consen 16 MWVFSLG------FWFHIVARLVYRQPEMAFFLAEIIAVGLVLSGGYRILDAW 62 (93)
T ss_pred chhhHHH------HHHHHHHHHHHhChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 5777763 4589999999999999999999999999999999998854
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0015 Score=69.81 Aligned_cols=51 Identities=27% Similarity=0.826 Sum_probs=40.5
Q ss_pred ccCCCCeeeEecccCCCC-C--eecccccccCCccccCHHHHHHHHHhcCCCccCCCccee
Q 015199 195 IAEEEAVCRICLDICEEG-N--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg-~--~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y 252 (411)
.......|.||+++...+ + +-++||. +.+|..||.+|++.+ .+|++|+..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 445678999999876432 2 5688997 589999999999985 4999999943
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.37 E-value=0.0031 Score=41.65 Aligned_cols=39 Identities=28% Similarity=0.891 Sum_probs=30.5
Q ss_pred eeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCC
Q 015199 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (411)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElC 248 (411)
|.||++. ..+....||.. .+|..|+.+|+. .+...|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~H-----~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCGH-----TFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCCC-----hHHHHHHHHHHH-hCcCCCCCC
Confidence 6789876 34567889874 689999999998 455689887
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0024 Score=52.97 Aligned_cols=50 Identities=26% Similarity=0.629 Sum_probs=38.0
Q ss_pred eeeEecccCC--------CC--CeecccccccCCccccCHHHHHHHHHhcC-CCccCCCcceecc
Q 015199 201 VCRICLDICE--------EG--NTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQN 254 (411)
Q Consensus 201 ~CRICl~~~e--------eg--~~Li~PC~CkGslk~VH~~CL~kWl~~s~-~~~CElCk~~y~~ 254 (411)
+|-||+...+ .| =||+.. .|. +.+|..|+.+|+..+. ...|+.|+++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 8999986643 12 266655 453 5899999999998764 5799999999874
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=96.14 E-value=0.0046 Score=60.26 Aligned_cols=55 Identities=25% Similarity=0.667 Sum_probs=40.6
Q ss_pred cCCCCeeeEecccCC----CCC---eecccccccCCccccCHHHHHHHHHhcC----CCccCCCcceeccc
Q 015199 196 AEEEAVCRICLDICE----EGN---TLKMECSCKGALRLVHEECAIRWFSTKG----NKNCEVCGKEVQNL 255 (411)
Q Consensus 196 ~eee~~CRICl~~~e----eg~---~Li~PC~CkGslk~VH~~CL~kWl~~s~----~~~CElCk~~y~~~ 255 (411)
..++.+|-||++.-- .++ .+..+|. |.+...|+.+|.+.+. .+.|++|+..+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 345689999997531 111 3567887 4789999999998642 46799999999865
No 25
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.06 E-value=0.0018 Score=73.15 Aligned_cols=55 Identities=27% Similarity=0.796 Sum_probs=38.9
Q ss_pred CCCCeeeEecccCC-CCCeec-cccc-ccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICE-EGNTLK-MECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~e-eg~~Li-~PC~-CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+...+|.||+.-.. -+..+- .-|. || +-+|..||-+|++.+++.+|++|+.++..
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44567999985432 122221 1232 44 36899999999999999999999988764
No 26
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.014 Score=59.99 Aligned_cols=54 Identities=24% Similarity=0.540 Sum_probs=40.0
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
++.++++.|-||+.+. .+.+++||+.- ..=..|.+.-.-. .+.|+||++.+..+
T Consensus 285 ~~~~~gkeCVIClse~--rdt~vLPCRHL----CLCs~Ca~~Lr~q--~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 285 DESESGKECVICLSES--RDTVVLPCRHL----CLCSGCAKSLRYQ--TNNCPICRQPIEEL 338 (349)
T ss_pred ccccCCCeeEEEecCC--cceEEecchhh----ehhHhHHHHHHHh--hcCCCccccchHhh
Confidence 4667899999999763 46789998731 3445798876633 45899999998853
No 27
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.63 E-value=0.0099 Score=41.71 Aligned_cols=40 Identities=28% Similarity=0.900 Sum_probs=32.9
Q ss_pred eeEecccCCCCCee-cccccccCCccccCHHHHHHHHHhcCCCccCCC
Q 015199 202 CRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (411)
Q Consensus 202 CRICl~~~eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~s~~~~CElC 248 (411)
|.||++..+ ++. ..+|. +.++.+|+.+|++..+...|++|
T Consensus 1 C~iC~~~~~--~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 779987654 344 89998 47999999999998778899988
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.021 Score=61.04 Aligned_cols=57 Identities=25% Similarity=0.629 Sum_probs=40.0
Q ss_pred CCccccCCCCeeeEecccCC---CC------------CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 191 NDEEIAEEEAVCRICLDICE---EG------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 191 ~~ed~~eee~~CRICl~~~e---eg------------~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
++|.-.+...+|-||+..-+ .+ +-+.+||. +..|..||++|...- +..|++|+....
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 33444566788999995421 11 23456998 489999999999732 368999998764
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.50 E-value=0.041 Score=41.47 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=36.3
Q ss_pred CeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
-.|.||.+..+ ++.+.||. +.+-+.|+.+|++. +.+|++|+..+.
T Consensus 2 ~~Cpi~~~~~~--~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK--DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC--CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 46999987644 57888874 67899999999987 568999998874
No 30
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.33 E-value=0.029 Score=39.45 Aligned_cols=38 Identities=32% Similarity=0.818 Sum_probs=29.2
Q ss_pred eeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhcCCCccCCC
Q 015199 202 CRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (411)
Q Consensus 202 CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElC 248 (411)
|.||++... ++ ...+|. +.+.++|+.+|++. +..|++|
T Consensus 1 C~iC~~~~~--~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc--CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 778987544 47 578998 47999999999987 4799988
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.25 E-value=0.03 Score=46.98 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=24.3
Q ss_pred cccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 226 k~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+.+|..|+.+|+..++ .|++|+++++.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 4799999999999966 99999999884
No 32
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.069 Score=53.74 Aligned_cols=55 Identities=25% Similarity=0.621 Sum_probs=44.1
Q ss_pred CCccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
++..+++....|-+|++.- .++--+||. +.+=-.|+..|...+. .|++|+..++.
T Consensus 231 ~~~~i~~a~~kC~LCLe~~--~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENR--SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred CCccCCCCCCceEEEecCC--CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 3456677778999999753 367789998 3677799999999876 69999999874
No 33
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.043 Score=57.30 Aligned_cols=46 Identities=30% Similarity=0.796 Sum_probs=32.4
Q ss_pred CCeeeEecccCCCCCee--cccccccCCccccCHHHHHHHHHhcC-CCccCCCc
Q 015199 199 EAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCG 249 (411)
Q Consensus 199 e~~CRICl~~~eeg~~L--i~PC~CkGslk~VH~~CL~kWl~~s~-~~~CElCk 249 (411)
.+.|.||-+.......+ +.-|. +.+|..||.+||..-- ++.||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 46899995433222222 44465 4899999999998764 47999999
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.38 E-value=0.053 Score=56.71 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=39.1
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+....|.||++... ++.+.||. |.+...|+..|+... ..|++|+..+.
T Consensus 24 e~~l~C~IC~d~~~--~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFD--VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhh--CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCccc
Confidence 45678999997653 57788997 478899999999764 48999999886
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.47 E-value=0.11 Score=37.50 Aligned_cols=42 Identities=24% Similarity=0.630 Sum_probs=33.9
Q ss_pred eeEecccCC-CCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcc
Q 015199 202 CRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (411)
Q Consensus 202 CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~ 250 (411)
|-||+.... +..+.+++|. +.+.++|+.++. .....|++|++
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 789998773 3356789997 589999999998 55689999985
No 36
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.10 E-value=0.092 Score=39.92 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=22.9
Q ss_pred eeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc--CCCccCCCcceec
Q 015199 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEVQ 253 (411)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s--~~~~CElCk~~y~ 253 (411)
|.+|.++.+..+.-..||.|. ++-|+.=|.... .+..|+-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 567776654444457899995 678888888776 3789999999884
No 37
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.44 Score=45.35 Aligned_cols=59 Identities=22% Similarity=0.482 Sum_probs=43.8
Q ss_pred CCCCCccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 188 ~e~~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
..+.++...++-.-|-||++..++..+.-.-|. |.+=.+|++.-++. ...|++|+.++.
T Consensus 120 ~k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 120 DKDVDPLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred cccccccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 345556666667889999998776555556776 47778999988765 569999997543
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.59 E-value=0.11 Score=55.06 Aligned_cols=50 Identities=24% Similarity=0.665 Sum_probs=36.4
Q ss_pred ccCCCCeeeEecccCCCC--CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 195 IAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg--~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
...|-+.|-+|++..+++ ..+-.+|. +-+|..|+++|-.. +|++|++.-.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 345679999999765443 23556777 47899999999644 7888887655
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.31 E-value=0.43 Score=53.89 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=37.4
Q ss_pred CCCeeeEecccCCCCC-eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 198 EEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 198 ee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
....|-+|+...-++. .-..+|.| |+|..|+..|-+.-+ +|++|+.+|-.+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhhcc--cCchhhhhhhee
Confidence 3467888875443222 22467887 999999999987754 999999999754
No 40
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=0.53 Score=49.71 Aligned_cols=63 Identities=27% Similarity=0.653 Sum_probs=45.7
Q ss_pred CCCCeeeEecccCC-CCC-eeccc-ccccCCccccCHHHHHHHHHhcCCCccCCCcceecc---cceeeeccCc
Q 015199 197 EEEAVCRICLDICE-EGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN---LPVTLLRMSS 264 (411)
Q Consensus 197 eee~~CRICl~~~e-eg~-~Li~P-C~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~---~Pv~llr~~~ 264 (411)
+.+..|-||+++.+ .+| .++.| |. +.+-.+|+++|+..+....|++|+.+... .|.+.+|+++
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 44678999998864 444 34444 44 48899999999976667899999988753 4555666664
No 41
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=0.15 Score=51.22 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=38.2
Q ss_pred CCCCeeeEecccC---C--C---CCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDIC---E--E---GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~---e--e---g~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.++.+|-+|-... + + ++.-.+-|+ +.+|+.|+.-|--..++.+|+-||.+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3456899996321 1 1 133456787 4899999999998777889999998865
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=85.57 E-value=0.33 Score=51.24 Aligned_cols=52 Identities=19% Similarity=0.548 Sum_probs=40.8
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
..-..|.||-+.+ .+.-+-||. +..-..||..|....+...|+.|+.+++..
T Consensus 367 sTFeLCKICaend--KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 367 STFELCKICAEND--KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred chHHHHHHhhccC--CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 3346899997543 345578997 367789999999888789999999999853
No 43
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.43 E-value=0.38 Score=43.68 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=28.4
Q ss_pred CCCeeeEecccCCC-CCeecccccccCCc-cccCHHHHHHHHHh
Q 015199 198 EEAVCRICLDICEE-GNTLKMECSCKGAL-RLVHEECAIRWFST 239 (411)
Q Consensus 198 ee~~CRICl~~~ee-g~~Li~PC~CkGsl-k~VH~~CL~kWl~~ 239 (411)
...+|+||++.-.+ +..+..+|...-.+ +.+|.+|+++|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 35789999986544 33455666544443 45999999999544
No 44
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=85.13 E-value=9.1 Score=36.66 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=21.5
Q ss_pred HhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhh
Q 015199 365 TILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRV 403 (411)
Q Consensus 365 ~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~ 403 (411)
..+..+.+++. ++|+.+.|=+ .|.+.+.|+.+-
T Consensus 151 ~~~~~~~~~sf----l~g~~~~~wl--~y~q~iywekkn 183 (205)
T PF07895_consen 151 SFISFQSLLSF----LSGLLLLMWL--VYFQIIYWEKKN 183 (205)
T ss_pred HHhhHHHHHHH----HHHHHHHHHH--HHHHHheeeccC
Confidence 44555666665 6788877444 457788888754
No 45
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=83.85 E-value=0.7 Score=33.53 Aligned_cols=40 Identities=25% Similarity=0.733 Sum_probs=27.9
Q ss_pred eeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCC--CccCCC
Q 015199 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGN--KNCEVC 248 (411)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~--~~CElC 248 (411)
|-||++-.+ +|..++|. +.+=+.||.+|.+..+. ..|++|
T Consensus 1 CpiC~~~~~--~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 778987654 68899997 36778999999987654 589887
No 46
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=82.89 E-value=0.76 Score=40.42 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.4
Q ss_pred cccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 226 k~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+.+|..|+.+|++.++ .|++|..+...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 4799999999999865 99999988764
No 47
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.84 E-value=1 Score=46.85 Aligned_cols=51 Identities=20% Similarity=0.601 Sum_probs=38.0
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcC--CCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG--NKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~--~~~CElCk~~y~ 253 (411)
+|++.|-.|.++.+-.+.-..||.|. -+-|---|-.+++ +-.|+-|+..|.
T Consensus 12 deed~cplcie~mditdknf~pc~cg------y~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCG------YQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcc------cHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 45566999998765445557899994 2567666876664 679999999986
No 48
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=80.51 E-value=1.1 Score=33.07 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=22.1
Q ss_pred eeEecccCCCCC-eecccccccCCccccCHHHHHHHHHhc--CCCccC
Q 015199 202 CRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK--GNKNCE 246 (411)
Q Consensus 202 CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~s--~~~~CE 246 (411)
|-||++-.++++ |.++||. +.+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 678887323334 6889987 478899999999875 455664
No 49
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=80.38 E-value=1.9 Score=50.32 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCCeeeEecccC---CCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+.+|+||-|+- .+|++++ ..|. --|=+.|.+ .=...|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchh
Confidence 456999998652 4567664 4552 125558873 334457999999999998
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.49 E-value=0.77 Score=46.97 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=35.4
Q ss_pred CeeeEecccCCCCC-eecccccccCCccccCHHHHHHHHHhc---------------------CCCccCCCcceec
Q 015199 200 AVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK---------------------GNKNCEVCGKEVQ 253 (411)
Q Consensus 200 ~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~s---------------------~~~~CElCk~~y~ 253 (411)
..|-||+-..-+++ -.+++|. +|+|..||.+.+..- -...|++|+..+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 45888875554444 4578997 599999998877541 0367999998876
No 51
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=0.98 Score=40.94 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=38.6
Q ss_pred ccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcc
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~ 250 (411)
.+..+++-.|.||++...+ +.+.||. +.+=..|+..+.. ....|+.|+.
T Consensus 7 ~~~~~~~~~C~iC~~~~~~--p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFRE--PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhhccccccChhhHHHhhc--Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 3445678899999987654 4788997 3667799999998 6789999995
No 52
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=1.2 Score=47.95 Aligned_cols=54 Identities=24% Similarity=0.601 Sum_probs=42.0
Q ss_pred CCCCCccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 188 ~e~~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.+++.++..+.+++|+||+.+. ..-+.+|. |..|+.+|+..+. .|++|+....+
T Consensus 468 s~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~ 521 (543)
T KOG0802|consen 468 SEATPSQLREPNDVCAICYQEM---SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKE 521 (543)
T ss_pred CCCChhhhhcccCcchHHHHHH---Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhc
Confidence 4567788888999999998764 12345665 9999999998865 89999887763
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=77.44 E-value=1.3 Score=35.24 Aligned_cols=48 Identities=10% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+-.|-||++-.. +|.+.||. +.+-+.|+++|+.. +..+|++|+..+..
T Consensus 4 ~f~CpIt~~lM~--dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMR--DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-S--SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhh--CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 446888876543 68888865 47899999999987 56799999887764
No 54
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=77.14 E-value=3.1 Score=38.97 Aligned_cols=54 Identities=26% Similarity=0.684 Sum_probs=37.3
Q ss_pred CCCeeeEecccCCCCCeecc-------ccc---ccCCccccCHHHHHHHHHhcC--------------------------
Q 015199 198 EEAVCRICLDICEEGNTLKM-------ECS---CKGALRLVHEECAIRWFSTKG-------------------------- 241 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~-------PC~---CkGslk~VH~~CL~kWl~~s~-------------------------- 241 (411)
|+..|-||++- .-|...+ .|+ |..+ |-|..||++.-+..+
T Consensus 1 ed~~CpICme~--PHNAVLLlCSS~~kgcRpymc~Ts--~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 1 EDVTCPICMEH--PHNAVLLLCSSHEKGCRPYMCDTS--YRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CCccCceeccC--CCceEEEEeccccCCccccccCCc--cchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 46789999964 2333333 333 6654 889999999886532
Q ss_pred ---CCccCCCcceeccc
Q 015199 242 ---NKNCEVCGKEVQNL 255 (411)
Q Consensus 242 ---~~~CElCk~~y~~~ 255 (411)
+..|++|+=++..+
T Consensus 77 ~~~~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 77 EQPELACPLCRGEVKGW 93 (162)
T ss_pred ccccccCccccCceece
Confidence 35799999888764
No 55
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.31 E-value=68 Score=35.18 Aligned_cols=58 Identities=21% Similarity=0.594 Sum_probs=40.7
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc---CCCccCCCcceecc---cceeeeccC
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEVQN---LPVTLLRMS 263 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s---~~~~CElCk~~y~~---~Pv~llr~~ 263 (411)
+..|-||+++.. -+..+-|. +.+=-.||.+.+... +-..|++|...+.. .|++.+..+
T Consensus 186 ~~~CPICL~~~~--~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~q 249 (513)
T KOG2164|consen 186 DMQCPICLEPPS--VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQ 249 (513)
T ss_pred CCcCCcccCCCC--cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecccc
Confidence 889999997543 24455565 356678998887654 56899999998864 466665443
No 56
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.35 E-value=3 Score=42.63 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCeeeEecccCC--CCC-eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 199 EAVCRICLDICE--EGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~e--eg~-~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+..|-+|....- .+- -++.+|. |-+=..|+.+.+.. +...|++|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 368999997532 211 2566786 35667999997643 56799999988764
No 57
>PLN02195 cellulose synthase A
Probab=74.23 E-value=2.9 Score=48.42 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=34.7
Q ss_pred CCCCeeeEecccC---CCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
....+|+||-+.- .+|++++ ..|. --|=+.|. ..=+.-|+..|+.||++|+
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCccc
Confidence 3467899998642 3566664 4452 12556887 3334457999999999998
No 58
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.52 E-value=5.3 Score=41.89 Aligned_cols=59 Identities=24% Similarity=0.525 Sum_probs=37.9
Q ss_pred ccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccccee
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~Pv~ 258 (411)
+|.+|++..|-||-...+- .-+.||.. -.-+.|..+-..-=.++.|.+|+++...+-++
T Consensus 55 ddtDEen~~C~ICA~~~TY--s~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT 113 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY--SARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEAVVFT 113 (493)
T ss_pred cccccccceeEEecCCceE--EEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence 3445667889999754332 24789983 22335665554444567999999998866443
No 59
>PLN02189 cellulose synthase
Probab=72.63 E-value=2.5 Score=49.29 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=35.4
Q ss_pred CCCeeeEecccC---CCCCeeccccc-ccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+.+|+||-++- .+|+++ -.|+ |. --|=+.|. ..-...|+..|+.||++|.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 356899998762 345544 4565 42 12667898 4455568999999999998
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=2.1 Score=40.56 Aligned_cols=27 Identities=33% Similarity=0.957 Sum_probs=21.1
Q ss_pred ccCCCCeeeEecccCCCCCee-cccccc
Q 015199 195 IAEEEAVCRICLDICEEGNTL-KMECSC 221 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~L-i~PC~C 221 (411)
-.++.-+|-||+++.+.|+.+ .+||-|
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEE
Confidence 344556799999988877765 799999
No 61
>PLN02436 cellulose synthase A
Probab=70.95 E-value=3.1 Score=48.74 Aligned_cols=51 Identities=25% Similarity=0.653 Sum_probs=35.3
Q ss_pred CCCeeeEeccc---CCCCCeeccccc-ccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDI---CEEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~---~eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
...+|.||-|+ ..+|+++ --|+ |. --|=+.|. ..-...++..|+.||++|.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 35699999876 2456655 4454 31 12666898 4455568999999999998
No 62
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=70.62 E-value=2.7 Score=42.15 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=20.0
Q ss_pred cccCCccccCHHHHHHHHHhcCCCccCCCcce
Q 015199 220 SCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (411)
Q Consensus 220 ~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~ 251 (411)
+|+.+ |+|..|+--=---||+++|+-||..
T Consensus 241 nCkrE--WFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKRE--WFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCchh--heeccccccCCCCCCcEeCHHhHhc
Confidence 56654 8888884311112579999999864
No 63
>PLN02400 cellulose synthase
Probab=69.72 E-value=2.9 Score=48.90 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=33.5
Q ss_pred CCCeeeEeccc---CCCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDI---CEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~---~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+.+|+||-|+ .++|++++ ..|. --|=+.|.+ .=..-|+..|+.||++|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCccc
Confidence 45699999875 24567664 4552 124457863 223347899999999998
No 64
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.36 E-value=3.6 Score=42.67 Aligned_cols=54 Identities=20% Similarity=0.496 Sum_probs=37.5
Q ss_pred CCCCeeeEecccCCCCC-----eeccc-ccccCCccccCHHHHHHHHHhcC-----CCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGN-----TLKME-CSCKGALRLVHEECAIRWFSTKG-----NKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~-----~Li~P-C~CkGslk~VH~~CL~kWl~~s~-----~~~CElCk~~y~~~ 255 (411)
..+.+|-||++...+-. --++| |+ +.+=..|+.+|-..+. .+.|++|+..-..+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 56889999997643211 11334 76 3556689999997665 68999999887654
No 65
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=69.11 E-value=2.2 Score=43.63 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=36.0
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.-.-||||.+-.. -+++++|.. -+-.-|+.+.+... -.|++|+.++..
T Consensus 24 s~lrC~IC~~~i~--ip~~TtCgH-----tFCslCIR~hL~~q--p~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRIS--IPCETTCGH-----TFCSLCIRRHLGTQ--PFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheee--cceeccccc-----chhHHHHHHHhcCC--CCCccccccHHh
Confidence 3467999986433 467888873 56678888888764 499999999864
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=68.52 E-value=1.8 Score=35.47 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=23.2
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHH
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR 235 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~k 235 (411)
++..|.+|...-..+.-.+.||. +.+|..|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 35679999876544334568885 5899999763
No 67
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=67.77 E-value=4.7 Score=42.03 Aligned_cols=36 Identities=25% Similarity=0.698 Sum_probs=27.6
Q ss_pred ccccccCCccccCHHHHHHHHHhcC-----------CCccCCCcceeccc
Q 015199 217 MECSCKGALRLVHEECAIRWFSTKG-----------NKNCEVCGKEVQNL 255 (411)
Q Consensus 217 ~PC~CkGslk~VH~~CL~kWl~~s~-----------~~~CElCk~~y~~~ 255 (411)
.+|.|+- .-=-+|+-|||..++ +..|+.|+..|-.+
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4677764 334699999998764 57999999998753
No 68
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=65.83 E-value=5.1 Score=45.94 Aligned_cols=60 Identities=22% Similarity=0.542 Sum_probs=43.4
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc-----CCCccCCCcceecccceee
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQNLPVTL 259 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s-----~~~~CElCk~~y~~~Pv~l 259 (411)
.+..+|-||++.-....+.- +|+.=.+.+|-.|+.+|-+.+ ..+.|+-|.+.++.+|.+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~W---SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y 253 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVW---SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTY 253 (950)
T ss_pred cCceEEEEeeeeccccCCce---ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCccc
Confidence 44579999997644322221 344445789999999998764 2689999999999888654
No 69
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.38 E-value=4.8 Score=42.27 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=35.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.|+..|-||+... -+..+.||+.+. -..|+.+-+.. ++.|=.||+....
T Consensus 420 sEd~lCpICyA~p--i~Avf~PC~H~S-----C~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP--INAVFAPCSHRS-----CYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc--chhhccCCCCch-----HHHHHHHHHhc--CCeeeEecceeee
Confidence 5678899998652 356889998432 34677776654 5699999999885
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=60.94 E-value=4.5 Score=44.46 Aligned_cols=53 Identities=21% Similarity=0.508 Sum_probs=40.1
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh---cCCCccCCCcceec
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQ 253 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---s~~~~CElCk~~y~ 253 (411)
++..++.+|.+|++..+ +.+..-|.. .+-+.|+..++.. ..+.+|+.|.-...
T Consensus 531 ~enk~~~~C~lc~d~ae--d~i~s~ChH-----~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAE--DYIESSCHH-----KFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhh--hhHhhhhhH-----HHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 44567789999998754 467788873 5678999998854 34799999997765
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=8.1 Score=38.48 Aligned_cols=52 Identities=23% Similarity=0.545 Sum_probs=41.5
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc------CCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s------~~~~CElCk~~y~ 253 (411)
+...-|+.|-....+|+...+-|- +.+|=+||..|-..- ....|+-|..++-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 445679999877777888788886 589999999998753 1479999999873
No 72
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=59.93 E-value=7.9 Score=45.36 Aligned_cols=50 Identities=26% Similarity=0.637 Sum_probs=34.5
Q ss_pred CCCeeeEecccC---CCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
...+|.||-++- .+|++++ ..|. --|-+.|. ..=...|+..|+.||++|.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCchh
Confidence 567899998652 4567664 4552 12555887 3334457899999999998
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=58.63 E-value=6 Score=29.03 Aligned_cols=22 Identities=27% Similarity=0.890 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHhcCCCccCCC
Q 015199 227 LVHEECAIRWFSTKGNKNCEVC 248 (411)
Q Consensus 227 ~VH~~CL~kWl~~s~~~~CElC 248 (411)
-+|..|+.++++...+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4899999999998877789987
No 74
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.05 E-value=10 Score=38.26 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=37.6
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHH-HHHhcCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR-WFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~k-Wl~~s~~~~CElCk~~y~ 253 (411)
++.+..|-||++.- +.+..+||. +.+=-.||.. |-..+ ...|++|+....
T Consensus 212 p~~d~kC~lC~e~~--~~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~ 262 (271)
T COG5574 212 PLADYKCFLCLEEP--EVPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVY 262 (271)
T ss_pred cccccceeeeeccc--CCccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhcc
Confidence 34567799998753 357889997 4677789998 87654 357999998765
No 75
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.07 E-value=11 Score=31.72 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCCCeeeEecccC---CCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
-...+|.||-+.- +.|+.++ +.|. --|-+.|.+-=.+ -++..|+.||++|..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErk-eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERK-EGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHH-TS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhh-cCcccccccCCCccc
Confidence 3567899997642 4566554 3443 2467788775443 368999999999984
No 76
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=56.76 E-value=3.9 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=25.9
Q ss_pred cccccCCc-cccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 218 ECSCKGAL-RLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 218 PC~CkGsl-k~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.|.|.+-- .|+|-.|.--=..-+|+++|+-|+..-.
T Consensus 234 ~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 234 GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 57766544 7999999653333468899999987643
No 77
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=55.84 E-value=40 Score=32.71 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=26.5
Q ss_pred ccceeehhhhHHHHHHHHHHHHhh---ccccchhhHhhhhhHHHHH
Q 015199 287 WQDFVVLVLISTICYFFFLEQILI---HDLKTQAIVLAAPFAFTLG 329 (411)
Q Consensus 287 Wq~f~VLVliS~l~yf~fleqLlv---~~~~t~Ai~islpfs~vlg 329 (411)
|.+.++.+++.+-+.|+++..+-+ .|.+++..+.+.+-.+.++
T Consensus 4 i~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~ 49 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVS 49 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHH
Confidence 334455555556666777765533 6889988777765554443
No 78
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=55.78 E-value=5.4 Score=44.96 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=40.1
Q ss_pred CCCCeeeEecccCCCCCe---ecccccccCCccccCHHHHHHHH---Hhc-----CCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNT---LKMECSCKGALRLVHEECAIRWF---STK-----GNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~---Li~PC~CkGslk~VH~~CL~kWl---~~s-----~~~~CElCk~~y~~~ 255 (411)
...+.|.||.+++.+.+. -.+-|+=.|--+-+|..|.++-= .+. +-++|--|+|-|..+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 456899999876543222 34667755555689999987641 111 248999999999753
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=55.30 E-value=8.7 Score=35.26 Aligned_cols=55 Identities=20% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.--+|-||.+...| +.+..|=.|-|. +.---=|..-|--.+-.-.|++||+.|+.
T Consensus 79 ~lYeCnIC~etS~e-e~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAE-ERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccch-hhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 34569999876543 567788777773 33344557778766667899999999985
No 80
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.98 E-value=6.6 Score=31.21 Aligned_cols=50 Identities=16% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
.++|.||++.-- +..+.-|... ..-.+|-.+-.+- ...+|++|+.+++.+
T Consensus 7 ~dECTICye~pv--dsVlYtCGHM----CmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSVLYTCGHM----CMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcc--hHHHHHcchH----HhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 377999997532 2233344311 1223676554432 456999999887743
No 81
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=54.26 E-value=4.9 Score=41.99 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=35.8
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
---|-||++=.. -+++.||.. .+-.-|+.+.+..+ ..|+.|..+++
T Consensus 23 lLRC~IC~eyf~--ip~itpCsH-----tfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFN--IPMITPCSH-----TFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhc--Cceeccccc-----hHHHHHHHHHhccC--CCCCceecccc
Confidence 456999986433 489999873 56678899998775 59999999986
No 82
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=53.71 E-value=12 Score=45.78 Aligned_cols=56 Identities=20% Similarity=0.672 Sum_probs=38.8
Q ss_pred ccCCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhc--------CCCccCCCcceeccc
Q 015199 195 IAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTK--------GNKNCEVCGKEVQNL 255 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s--------~~~~CElCk~~y~~~ 255 (411)
..+.+++|-||+.+.-..-| +.+-|. +.+|-.|..+=+..+ +-..|++|+.++..+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 45567899999965433222 345555 589999997755543 247899999998754
No 83
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=53.50 E-value=14 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhh
Q 015199 345 IWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRV 403 (411)
Q Consensus 345 iW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~ 403 (411)
+|+++.-. +.||--+++.-+|-+|++||.+.|.|++..+-+=++.- |-+|+
T Consensus 16 mwv~~lG~------wfhiVarlVy~~PemA~~laeiiav~lVl~GgYRilda--~iarv 66 (80)
T PRK13727 16 MWVFSLGV------WFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDA--WIARV 66 (80)
T ss_pred eehhhhhH------HHHHHHHHHHcChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHH
Confidence 57776633 47999999999999999999999999999998877764 43444
No 84
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=52.16 E-value=32 Score=32.57 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhhh
Q 015199 354 ALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRVA 404 (411)
Q Consensus 354 ~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~~ 404 (411)
.++++-..+.++-++-...-.+--++-.++|++|=.-+=-+++=+||.-.+
T Consensus 113 ~~~iid~~~l~r~vkk~v~~kFp~~~~~~~gl~~Ya~~Ra~q~Rr~R~PkP 163 (170)
T PF11241_consen 113 LLVIIDGVILGRRVKKRVAEKFPDTTESGRGLGWYAFMRAMQIRRWRLPKP 163 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCcchhhHHHHHHhccccccCCCC
Confidence 445555556666665555555555556789999988888899999997655
No 85
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=51.96 E-value=1.2e+02 Score=31.60 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHhhhccceeeehhHHH
Q 015199 346 WTYAALEFALVAVAV-HLLYTILHLKAIYAILLSSLLGFGAAMSLNSLY 393 (411)
Q Consensus 346 W~yA~~qf~lv~l~~-~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~ 393 (411)
.+.-++|..+.++|+ ++.|++++-+==-+++-|.+.|||.+++-|++.
T Consensus 309 liil~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a~a 357 (368)
T PF03616_consen 309 LIILAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNAMA 357 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHHHH
Confidence 344567777766665 556899998887888899999999999999875
No 86
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=51.57 E-value=44 Score=30.94 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=25.4
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 015199 316 QAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEF 353 (411)
Q Consensus 316 ~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf 353 (411)
-+++++.|++++.|++-+++++. +||++.=+-.
T Consensus 74 Ls~ilaiP~A~~~Gi~FA~lsf~-----hIW~v~P~ik 106 (148)
T PF01146_consen 74 LSLILAIPLAFLWGILFACLSFL-----HIWCVMPCIK 106 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45678999999999998888777 7777665433
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=13 Score=35.80 Aligned_cols=57 Identities=19% Similarity=0.478 Sum_probs=33.4
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc----C-----CCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----G-----NKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s----~-----~~~CElCk~~y~ 253 (411)
++-..|-||+.-.-+|..--.-|.-..--+-+|+-||-.|++.- + --.|+-|..++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 45567999984322222112234322223689999999999742 1 147888877643
No 88
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=49.83 E-value=19 Score=30.06 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhh
Q 015199 345 IWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRV 403 (411)
Q Consensus 345 iW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~ 403 (411)
+|+++.-. +.||--+++.-+|-+|++||.+.|.|++..+-+=++.- |-+|+
T Consensus 16 mwv~~lG~------wfhiVarlVy~~P~mA~~laeliav~lVl~G~YRiLda--wiarv 66 (80)
T TIGR02741 16 LWVFSLGI------WFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDA--WIARV 66 (80)
T ss_pred chhhHhhH------HHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHH
Confidence 57777633 47899999999999999999999999999998877764 43444
No 89
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=49.44 E-value=75 Score=26.79 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhh
Q 015199 341 IREYIWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFT 398 (411)
Q Consensus 341 ~r~yiW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~ 398 (411)
.-+=+|.++++-+ ++.++..+...+++....+...+.-+..+-.+|.+|.++...++
T Consensus 51 l~r~mw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~y~~~~~ 107 (108)
T PF10947_consen 51 LYRKMWLYAIIFL-ALLVALAIILILLGFPPGLGLGLSLAISLFFGMFANYWYYRHLK 107 (108)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677774444 34444456666666555555555555677778888888766553
No 90
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=48.81 E-value=8.5 Score=37.89 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=34.7
Q ss_pred HHhhccccchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015199 307 QILIHDLKTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYT 365 (411)
Q Consensus 307 qLlv~~~~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~ 365 (411)
+++.+|+.+.-++-.+|.++-+|++-.+.+.....-.++|..+++-+...+++.++|..
T Consensus 32 ~~~~g~~~~s~~~~~~~~~dp~~~~q~~~a~~~~~~~~l~g~~iv~~~~~l~~GR~fCg 90 (271)
T PRK09477 32 WILKGNLSSSLLFDTIPLTDPLATLQSLAAGHLPATVALIGALIITVFYALAGGRAFCS 90 (271)
T ss_pred eeEEecchHHHhcCCccccCHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhccccee
Confidence 45566665543343477777777777777766665556655555444445555555543
No 91
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=48.05 E-value=18 Score=29.16 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhH------HHHHHHhhhccceeeehhHHHHHhhhhhhhhh
Q 015199 345 IWTYAALEFALVAVAVHLLYTILHLKAI------YAILLSSLLGFGAAMSLNSLYIQYFTWRVRVA 404 (411)
Q Consensus 345 iW~yA~~qf~lv~l~~~ify~~l~~~~v------~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~~ 404 (411)
+|.|....+++++...-++| +++.... ++.++|-+ |+|..++++. -+||.+..
T Consensus 1 v~~Ytl~Rl~lfv~~~~vi~-~v~~~~~~~~p~~~~~l~A~v----is~~lS~~ll--~~~R~~~~ 59 (69)
T PF14012_consen 1 VLRYTLARLGLFVVLFAVIW-LVGLLIGVEVPLLVAALLALV----ISMPLSYVLL--RRLRDRAS 59 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHH----HHHHHHHHHH--HHHHHHHH
Confidence 36899999998888888877 6665555 55555444 4555555554 45565554
No 92
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=14 Score=38.03 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=28.9
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHH--HhcCCCccCCCcceec
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF--STKGNKNCEVCGKEVQ 253 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl--~~s~~~~CElCk~~y~ 253 (411)
..++|-||+.... -|..++|. |.-|..--- ...+...|.+|+.++.
T Consensus 6 ~~~eC~IC~nt~n--~Pv~l~C~--------HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGN--CPVNLYCF--------HKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCC--cCcccccc--------chhhhhhhcchhhcCCCCCceecCCCC
Confidence 3567999996532 25667776 666632211 0123578999999985
No 93
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=46.59 E-value=92 Score=34.30 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhhh
Q 015199 364 YTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRVA 404 (411)
Q Consensus 364 y~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~~ 404 (411)
||.+. |++..-.+|.|++.++.+-.-++..---.||.+|-
T Consensus 381 Yr~F~-n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv 420 (518)
T KOG2568|consen 381 YRKFT-NTLAFSVVASFAFILVETIFYSIMSCNKDWKERWV 420 (518)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 44443 56666667777777777666665555567888774
No 94
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=45.12 E-value=1.5e+02 Score=25.65 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred ehhhhHHHHHHHHHHHHhh--ccccchh----hHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015199 292 VLVLISTICYFFFLEQILI--HDLKTQA----IVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYT 365 (411)
Q Consensus 292 VLVliS~l~yf~fleqLlv--~~~~t~A----i~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~ 365 (411)
+..+.+++--|-|+-|+.- ..-.+.+ .++.+-+++.+=++-++....+..--.-|++ +-++++++|..|.|.
T Consensus 8 iG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~--~il~liIl~~kI~~~ 85 (89)
T COG4095 8 IGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIIS--FILSLIILFYKIKYI 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHH--HHHHHHHHHHHHHHH
Confidence 3445677788889999854 2222333 2222223333333333333333444444554 457889999999887
Q ss_pred h
Q 015199 366 I 366 (411)
Q Consensus 366 ~ 366 (411)
+
T Consensus 86 ~ 86 (89)
T COG4095 86 L 86 (89)
T ss_pred H
Confidence 5
No 95
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=44.56 E-value=7.7 Score=45.55 Aligned_cols=56 Identities=34% Similarity=0.548 Sum_probs=33.2
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcce
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~ 251 (411)
-.-+++..|-||++.+.+....+.-|. |--.+||++|.-.=+...|.+.|--|-+.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhccC
Confidence 344678999999987654323344443 33358999998722222345666666544
No 96
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=43.65 E-value=1.6e+02 Score=29.33 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=4.6
Q ss_pred cchhHHHHHHHh
Q 015199 368 HLKAIYAILLSS 379 (411)
Q Consensus 368 ~~~~v~ai~la~ 379 (411)
++....++.++-
T Consensus 84 g~~~~~a~~~a~ 95 (317)
T PRK11618 84 GWSPLLAFPLVL 95 (317)
T ss_pred CCcHHHHHHHHH
Confidence 333333333333
No 97
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=42.44 E-value=13 Score=36.28 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=33.2
Q ss_pred HHhhccccchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015199 307 QILIHDLKTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYT 365 (411)
Q Consensus 307 qLlv~~~~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~ 365 (411)
+++.+|+.+.-++-.+|.++=+|.+-++.+...+.-.+++.-..+-+...+++.++|..
T Consensus 25 ~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~GR~fCg 83 (255)
T TIGR02163 25 WILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRAFCS 83 (255)
T ss_pred eEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhccccee
Confidence 45667776655554577777777777666666554444444433333334444555543
No 98
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=42.30 E-value=74 Score=32.23 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=11.0
Q ss_pred hccceeeehhHHHHHhhh
Q 015199 381 LGFGAAMSLNSLYIQYFT 398 (411)
Q Consensus 381 ~gfgi~~~~~~~~~~~~~ 398 (411)
.+||+..+.=-+|+|++|
T Consensus 249 ~AfGL~vTLVWLYlEILR 266 (274)
T PF12811_consen 249 AAFGLLVTLVWLYLEILR 266 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666655
No 99
>COG4129 Predicted membrane protein [Function unknown]
Probab=42.14 E-value=62 Score=33.46 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=29.4
Q ss_pred cchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 015199 314 KTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYTILHLKA 371 (411)
Q Consensus 314 ~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~~l~~~~ 371 (411)
.+--.++..-.++++|++.+++.+.++- +.-|+++ +++++...+-..+++++
T Consensus 52 ~s~~~~~~r~~g~~iG~~~a~l~~~l~g-~~~~~~~-----v~~~i~i~~~~~~~~~~ 103 (332)
T COG4129 52 RSLKRALQRLLGNALGAILAVLFFLLFG-QNPIAFG-----VVLLIIIPLLVLLKLEN 103 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-ccHHHHH-----HHHHHHHHHHHHHhccc
Confidence 3334456666788888877766655543 5555554 44444444444555554
No 100
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.58 E-value=8.5 Score=40.98 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=39.0
Q ss_pred ccCCCCeeeEecccC-CCCCee-cccccccCCccccCHHHHHHHHHhcCCCccCCCcc
Q 015199 195 IAEEEAVCRICLDIC-EEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (411)
Q Consensus 195 ~~eee~~CRICl~~~-eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~ 250 (411)
..+-+-.|-.|-+.. ...+.| -+||. +.+|..||...+...+.+.|+-|+.
T Consensus 361 ~~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 361 VEETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345677899996543 222334 58998 4899999999998889999999994
No 101
>PRK05978 hypothetical protein; Provisional
Probab=41.39 E-value=1.6e+02 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.662 Sum_probs=14.2
Q ss_pred HHHHhcCCCccCCCcceeccc
Q 015199 235 RWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 235 kWl~~s~~~~CElCk~~y~~~ 255 (411)
.+++. +.+|+.|+.+|...
T Consensus 47 g~Lkv--~~~C~~CG~~~~~~ 65 (148)
T PRK05978 47 AFLKP--VDHCAACGEDFTHH 65 (148)
T ss_pred ccccc--CCCccccCCccccC
Confidence 45555 45999999999853
No 102
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=41.01 E-value=38 Score=36.73 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=41.6
Q ss_pred ccCCCCeeeEecccC-CCCCeecccccccCCccccCHHHHHHHHHhc------CCCccCCCcceecccc
Q 015199 195 IAEEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQNLP 256 (411)
Q Consensus 195 ~~eee~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s------~~~~CElCk~~y~~~P 256 (411)
......+|-+|++.. .+.|.++.=|+|+- ++|+.|-+--++.. ..+.|.+|...-..+|
T Consensus 164 ~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~---~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 164 GHKVNLQCSVCYCGGPGAGNRMLQCDKCRQ---WYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred cccccceeeeeecCCcCccceeeeeccccc---HHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 334445599999764 34577777788864 99999976655432 2689999998877653
No 103
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=38.94 E-value=17 Score=36.79 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=38.4
Q ss_pred CeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cC-----CCccCCCcceec
Q 015199 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KG-----NKNCEVCGKEVQ 253 (411)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~-----~~~CElCk~~y~ 253 (411)
..|.+|.++.++.+..+.-|.-++--...|-.||..-+.. -+ ...|+.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 6899998776444556667766665668999999983322 12 469999998654
No 104
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=37.56 E-value=48 Score=36.04 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhccccc--hhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015199 300 CYFFFLEQILIHDLKT--QAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYTILHL 369 (411)
Q Consensus 300 ~yf~fleqLlv~~~~t--~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~~l~~ 369 (411)
....+-+.|--.|.++ ++..++..++.+.|-+.+....++..-+|+|.++.+.+..++....++|+.+..
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r~~~ 480 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKRLVP 480 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333344443444444 777788889999988778888888899999999999999999999999987753
No 105
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=37.25 E-value=1.5e+02 Score=25.50 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 015199 341 IREYIWTYAALEFALVAVAVHLLYTILHLK 370 (411)
Q Consensus 341 ~r~yiW~yA~~qf~lv~l~~~ify~~l~~~ 370 (411)
.|++.+.+.. =.++.+++..+|..+++++
T Consensus 111 ~r~~~~~~~~-s~~~~~~i~~~F~~~L~v~ 139 (141)
T PF07331_consen 111 ERRWLRLLLI-SVVFAAVIYFVFAKLLGVP 139 (141)
T ss_pred CCcHHHHHHH-HHHHHHHHHHHHHHHHCCC
Confidence 3445554332 2345555666677777653
No 106
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=37.17 E-value=71 Score=27.43 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.3
Q ss_pred hcchhHHHHHHHhhhccceeeehh
Q 015199 367 LHLKAIYAILLSSLLGFGAAMSLN 390 (411)
Q Consensus 367 l~~~~v~ai~la~~~gfgi~~~~~ 390 (411)
++++++.|+.+|...|||+.....
T Consensus 62 ~kl~t~~Af~~Ai~~Sl~~~~~~~ 85 (90)
T PF11674_consen 62 LKLNTFWAFPLAILISLAITQLVR 85 (90)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988765443
No 107
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=35.92 E-value=36 Score=34.56 Aligned_cols=56 Identities=27% Similarity=0.551 Sum_probs=32.0
Q ss_pred cCCCCCCCccC-CCCCCCccccCCCCeeeEecccCCCCCe---ecccccccCCccccCHHHHHHHHHhc
Q 015199 176 TDTSDDQIVPA-PMENNDEEIAEEEAVCRICLDICEEGNT---LKMECSCKGALRLVHEECAIRWFSTK 240 (411)
Q Consensus 176 ~~~~~~~~~~~-~~e~~~ed~~eee~~CRICl~~~eeg~~---Li~PC~CkGslk~VH~~CL~kWl~~s 240 (411)
.+.|||.|=.+ +.+.| -+.-..|.||++..-+|-+ |..-=.=+| |++|+++|-.+.
T Consensus 10 IDLnddniCsVCkl~Td----~~tLsfChiCfEl~iegvpks~llHtkSlRG-----HrdCFEK~HlIa 69 (285)
T PF06937_consen 10 IDLNDDNICSVCKLGTD----TETLSFCHICFELSIEGVPKSNLLHTKSLRG-----HRDCFEKYHLIA 69 (285)
T ss_pred eccCCCceeeeeeeccc----ccceeecceeeccccccCccccccccccccc-----hHHHHHHHHHHH
Confidence 34566665554 33332 2445679999875433322 222212233 999999998775
No 108
>PRK07668 hypothetical protein; Validated
Probab=35.63 E-value=1.3e+02 Score=30.11 Aligned_cols=107 Identities=14% Similarity=0.350 Sum_probs=60.0
Q ss_pred cccceeehhhhHHHHHHHHHHHHhhc-cc---cchhhHhhhhhHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHH-
Q 015199 286 AWQDFVVLVLISTICYFFFLEQILIH-DL---KTQAIVLAAPFAFTLGILSSIFAVILAI-------REYIWTYAALEF- 353 (411)
Q Consensus 286 ~Wq~f~VLVliS~l~yf~fleqLlv~-~~---~t~Ai~islpfs~vlgllssi~~~~~~~-------r~yiW~yA~~qf- 353 (411)
-|.......++++++|+.+-.-+.++ |. .+-.-.+-.|+.+++|+...+.++-... +.|+-.|.....
T Consensus 73 ~~~~~l~~~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~~~~~p 152 (254)
T PRK07668 73 ENIKLILFIIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIP 152 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 45565666777888887776655444 21 3344445555566665554444333321 224333333332
Q ss_pred -HHHHHHHHHH----HHhhcchhHHHHHHHhhhccceeeehhHHH
Q 015199 354 -ALVAVAVHLL----YTILHLKAIYAILLSSLLGFGAAMSLNSLY 393 (411)
Q Consensus 354 -~lv~l~~~if----y~~l~~~~v~ai~la~~~gfgi~~~~~~~~ 393 (411)
++.++...++ |.+++++..-+++++.+. |=|+|..|..+
T Consensus 153 ~~l~i~i~~l~k~yp~~~~~ls~~qs~il~~~~-~i~~~~~~~~~ 196 (254)
T PRK07668 153 MLLIVAIMFLNKWYGTPMLQFTQMQSYILAGLI-FLITVIINIYF 196 (254)
T ss_pred HHHHHHHHHHHhhcCceEEEecchHHHHHHHHH-HHHHHHHHHHH
Confidence 3333333332 456788999999998887 66667666544
No 109
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=34.48 E-value=3.3e+02 Score=26.75 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=46.3
Q ss_pred ccchhhHhhhhhHHHHHHHHHHHHHHHhhHH---HHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhcccee
Q 015199 313 LKTQAIVLAAPFAFTLGILSSIFAVILAIRE---YIW---TYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAA 386 (411)
Q Consensus 313 ~~t~Ai~islpfs~vlgllssi~~~~~~~r~---yiW---~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~ 386 (411)
....+.++-..|+...|+..+-+........ -+| .+++..| ..+-.+.+...-.+...-+.+...+.|..|+
T Consensus 82 s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F--~~ls~~g~~tk~Dls~l~~~l~~aligLiia 159 (233)
T COG0670 82 SSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVF--GALSLYGYTTKRDLSSLGSFLFMALIGLIIA 159 (233)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4556767777777777776555444433322 133 2333333 3455666777777777777777777777777
Q ss_pred eehhH
Q 015199 387 MSLNS 391 (411)
Q Consensus 387 ~~~~~ 391 (411)
+-.|.
T Consensus 160 svvn~ 164 (233)
T COG0670 160 SLVNI 164 (233)
T ss_pred HHHHH
Confidence 75554
No 110
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=34.12 E-value=1.2e+02 Score=32.01 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhh
Q 015199 358 VAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRV 401 (411)
Q Consensus 358 l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~ 401 (411)
++...++.+++..-=+.-+.+-+..+|+++-.+-+++|.++-..
T Consensus 285 ~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~erire~l 328 (397)
T TIGR01129 285 VLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEEL 328 (397)
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEeHHHHHHH
Confidence 33444455555443344444555678888888888888776543
No 111
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=33.80 E-value=2.2e+02 Score=30.57 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=30.4
Q ss_pred hccccchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 015199 310 IHDLKTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYTILHLK 370 (411)
Q Consensus 310 v~~~~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~~l~~~ 370 (411)
.+++..-+.+-.+..+.+.++++..+..++-.++.=+++++ .|++|.+. .|.+++++
T Consensus 345 lSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~---~L~~LY~~-Ly~lLq~E 401 (430)
T PF06123_consen 345 LSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAG---LLAALYGF-LYVLLQSE 401 (430)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH---HHHHHHHH-HHHHHHhh
Confidence 34554444444444455556666666666666666566555 44444444 45556654
No 112
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=33.74 E-value=1.8e+02 Score=26.81 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015199 344 YIWTYAALEFALVAVAVHLLYTILHL 369 (411)
Q Consensus 344 yiW~yA~~qf~lv~l~~~ify~~l~~ 369 (411)
|+|+.++ .-|+|++--.|.+.++
T Consensus 57 Y~~iAv~---nAvvLI~WA~YNq~RF 79 (137)
T PRK14585 57 YFLLAVA---NAVVLIVWALYNKLRF 79 (137)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHh
Confidence 5555554 5566666666666664
No 113
>COG2246 Predicted membrane protein [Function unknown]
Probab=33.48 E-value=75 Score=28.62 Aligned_cols=47 Identities=34% Similarity=0.495 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhh
Q 015199 356 VAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVR 402 (411)
Q Consensus 356 v~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~ 402 (411)
+.+-..++|-+.+.-...++.+|.+.|.++++-.|+++-..+-||.+
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~a~~i~~~~~~i~nfi~s~~v~~~~~ 138 (139)
T COG2246 92 LAVLLLVLYILTLGLLLVAYLIANLIGIVAAFIINFLLSKRVFWRVR 138 (139)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 33444455555554555668999999999999999999999999865
No 114
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=32.87 E-value=2.8e+02 Score=24.70 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhh
Q 015199 343 EYIWTYAALEFALVAVAVHL--LYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTW 399 (411)
Q Consensus 343 ~yiW~yA~~qf~lv~l~~~i--fy~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~w 399 (411)
+|+|.-.++-+++.+++.++ +-+++++.++-.....-..++|+ ...++.|..||
T Consensus 126 ~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~---~~~~~~ei~K~ 181 (182)
T PF00689_consen 126 KWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALAL---LPFIVDEIRKL 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHC---HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56666666677777778887 77888888774444433333333 23445555554
No 115
>PF04641 Rtf2: Rtf2 RING-finger
Probab=31.84 E-value=42 Score=32.97 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=36.7
Q ss_pred cccCCCCeeeEecccCCCCCe--ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccc
Q 015199 194 EIAEEEAVCRICLDICEEGNT--LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~--Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~P 256 (411)
+..+..-+|-|+..+...... .+.||.| .+-+.||.+- . ....|++|+.+|...-
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~-k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL-K--KSKKCPVCGKPFTEED 164 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh-c--ccccccccCCccccCC
Confidence 334555666666655433223 3579998 7788888775 2 3567999999998543
No 116
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=31.79 E-value=76 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehh
Q 015199 342 REYIWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLN 390 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~ 390 (411)
..|+|.+|..-.++.++|+.+| +.+++..+.|.+.-.+|-.+.+..-
T Consensus 16 aQYl~~faGgll~~~il~~iLY--i~Gv~~~ici~~~~~~~~~lv~~~f 62 (96)
T PF13571_consen 16 AQYLFYFAGGLLGLFILFVILY--IAGVNQWICIGFGVVSGSLLVWQTF 62 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhccchhhhHHHHHHHhhhhheeee
Confidence 4699999997777777775444 7799999999888887777665543
No 117
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=31.14 E-value=25 Score=39.92 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=35.5
Q ss_pred CeeeEecccC-CCCCeecccccccCCccccCHHHH-------HHHHHhcC-------CCccCCCcceecc
Q 015199 200 AVCRICLDIC-EEGNTLKMECSCKGALRLVHEECA-------IRWFSTKG-------NKNCEVCGKEVQN 254 (411)
Q Consensus 200 ~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL-------~kWl~~s~-------~~~CElCk~~y~~ 254 (411)
--|-+|-||. =.+|||+. |.=.+---.||+.|- -.||-.|- ..+||+|-+++--
T Consensus 6 GGCCVCSDErGWaeNPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGA 74 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGA 74 (900)
T ss_pred cceeeecCcCCCccCceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccc
Confidence 3488998763 34688873 321111236999997 46885542 4799999999864
No 118
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=31.07 E-value=1.5e+02 Score=24.75 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHH
Q 015199 295 LISTICYFFFLEQ 307 (411)
Q Consensus 295 liS~l~yf~fleq 307 (411)
.++++|+=+++.|
T Consensus 9 ~lsIlcVSgYigQ 21 (80)
T PF10810_consen 9 ALSILCVSGYIGQ 21 (80)
T ss_pred HHHHHHhhhHHHH
Confidence 3566777666666
No 119
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=29.85 E-value=3.6e+02 Score=24.51 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=29.0
Q ss_pred ccccchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015199 311 HDLKTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYT 365 (411)
Q Consensus 311 ~~~~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~ 365 (411)
...++..-..+.|.+....++..++... +.+.++.++++++.+.++.
T Consensus 115 ~~~g~~~~~~~sp~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~g 161 (286)
T COG0842 115 REFGTLERLLVSPVSRLFILLGKIVPYL--------VVASLIAGLVLLVIAFLLG 161 (286)
T ss_pred HhhCcHHHHHhCCCcHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHc
Confidence 4667777777888886555555554444 3445555666666666665
No 120
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=28.99 E-value=1.6e+02 Score=32.18 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhh
Q 015199 355 LVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWR 400 (411)
Q Consensus 355 lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr 400 (411)
+-++++..++.++++.-=+.-+.+-+.++|+++-.|-++.|.++-.
T Consensus 367 ~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~ErIree 412 (498)
T PRK05812 367 ANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREE 412 (498)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeHHHHHH
Confidence 3444555556666655444445555567888888888888877643
No 121
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=28.92 E-value=2.5e+02 Score=25.06 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.4
Q ss_pred hHHHHHHHhhhccceeeehhHHHHHhhhhhh
Q 015199 371 AIYAILLSSLLGFGAAMSLNSLYIQYFTWRV 401 (411)
Q Consensus 371 ~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~ 401 (411)
+..-+.+|++.+|.++.-.|..+.+++|-|.
T Consensus 66 ~~~ri~~aS~~a~lisq~~d~~if~~lk~~~ 96 (145)
T PF02592_consen 66 PTPRIALASLIAFLISQLLDVYIFSKLKRKT 96 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667889999999999999999998887663
No 122
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=28.75 E-value=46 Score=36.25 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.7
Q ss_pred hhHHHHHhhh
Q 015199 389 LNSLYIQYFT 398 (411)
Q Consensus 389 ~~~~~~~~~~ 398 (411)
.|-++-|-+|
T Consensus 411 aNVlI~ERIr 420 (506)
T COG0342 411 ANVLIFERIR 420 (506)
T ss_pred ccEEeeHHHH
Confidence 4555544443
No 123
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.51 E-value=1.1e+02 Score=35.76 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhhhcccee
Q 015199 355 LVAVAVHLLYTILHLKAIYAILLSSLLGFGAA 386 (411)
Q Consensus 355 lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~ 386 (411)
+|+++..|.=++++.-+|+++++ .|||+.
T Consensus 651 fvvM~~~I~ktflk~f~vfs~ll---iaF~ls 679 (929)
T KOG0510|consen 651 FVVMLEVILKTFLKSFMVFSILL---IAFGLS 679 (929)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH---HHhhhh
Confidence 47788889999999999999998 555554
No 124
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=27.90 E-value=52 Score=34.19 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhhh
Q 015199 357 AVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRVA 404 (411)
Q Consensus 357 ~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~~ 404 (411)
..++|++|.....|..++..++-|.--||+...-.+++-|+.||..+.
T Consensus 29 ~~i~~~~~~~~~~q~~~~~~~p~l~~~~I~~~~~~~~~~y~~~~~~r~ 76 (328)
T KOG2846|consen 29 SQIHQLDYAPEKSQSILSQWQPNLGFPGIILTVRRLSYTYFEYRLNRN 76 (328)
T ss_pred HHHHhhhccCchhHHHHHHHHHHhcchHHHHHHHHHHHhhhheecccc
Confidence 335788999999999999999999999999999999999999998764
No 125
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=27.54 E-value=1.1e+02 Score=37.44 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhh
Q 015199 345 IWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVR 402 (411)
Q Consensus 345 iW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~ 402 (411)
-++.|.+-..+.++++..++.+++..-=+.-+.+-++.+|+++=.|-++.|.++=..+
T Consensus 933 ~GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREELr 990 (1403)
T PRK12911 933 GGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYL 990 (1403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHHHH
Confidence 3444444444445555566666665544444455556788888888888888776544
No 126
>PRK01766 multidrug efflux protein; Reviewed
Probab=27.39 E-value=4.2e+02 Score=27.08 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhh
Q 015199 352 EFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRV 401 (411)
Q Consensus 352 qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~ 401 (411)
.+.+.+.+.+++....++. +..+..+.+.+.-+....+..++...+||.
T Consensus 398 ~~~~~i~~~~~l~~~~~~G-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 398 YWVLGLPLGYILALTDPMG-PFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHhccCCC-ceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544433332 455666666666666666666666677765
No 127
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=27.25 E-value=5.1e+02 Score=27.50 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHhhhccceeeehhHHHH
Q 015199 348 YAALEFALVAVAV-HLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYI 394 (411)
Q Consensus 348 yA~~qf~lv~l~~-~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~ 394 (411)
..+.|..+.++++ ++-|++++-+==-||+-|.+-|||.+.+-|++..
T Consensus 309 il~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaian 356 (398)
T TIGR00210 309 ILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIAN 356 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHH
Confidence 3455666666444 5778888877556889999999999999998864
No 128
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=27.24 E-value=26 Score=39.44 Aligned_cols=33 Identities=33% Similarity=0.754 Sum_probs=25.9
Q ss_pred ecccccccCCccccCHHHHHHHHHhc---C------CCccCCCc
Q 015199 215 LKMECSCKGALRLVHEECAIRWFSTK---G------NKNCEVCG 249 (411)
Q Consensus 215 Li~PC~CkGslk~VH~~CL~kWl~~s---~------~~~CElCk 249 (411)
...-|+|.| ++.|..|+.-|+.+. + .+.||-|+
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 355688887 578999999999875 1 47888888
No 129
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=27.20 E-value=51 Score=27.26 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=5.7
Q ss_pred hccceeee
Q 015199 381 LGFGAAMS 388 (411)
Q Consensus 381 ~gfgi~~~ 388 (411)
+|||++|+
T Consensus 59 ~G~G~G~a 66 (75)
T PF04418_consen 59 AGFGIGMA 66 (75)
T ss_pred cccccchh
Confidence 67777765
No 130
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=27.11 E-value=85 Score=33.02 Aligned_cols=24 Identities=33% Similarity=0.478 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHH
Q 015199 354 ALVAVAVHLLYTILHLKAIYAILL 377 (411)
Q Consensus 354 ~lv~l~~~ify~~l~~~~v~ai~l 377 (411)
.+|++++.+||+..++-+++++.+
T Consensus 259 ilV~l~~~~~yr~~gl~a~ial~~ 282 (397)
T TIGR01129 259 VLVLVFMILYYRLFGLIAAIALVI 282 (397)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444444444444444433
No 131
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.81 E-value=39 Score=34.95 Aligned_cols=34 Identities=26% Similarity=0.639 Sum_probs=25.7
Q ss_pred ccccCCccccCHHHHHHHHHhc-----------CCCccCCCcceeccc
Q 015199 219 CSCKGALRLVHEECAIRWFSTK-----------GNKNCEVCGKEVQNL 255 (411)
Q Consensus 219 C~CkGslk~VH~~CL~kWl~~s-----------~~~~CElCk~~y~~~ 255 (411)
|-|+- .--.+||.+|+.-+ |+.+|+.|+..|-..
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 44654 45679999999654 368999999999854
No 132
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=26.76 E-value=2.2e+02 Score=28.07 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.9
Q ss_pred hhccceeeehhHHHHHh
Q 015199 380 LLGFGAAMSLNSLYIQY 396 (411)
Q Consensus 380 ~~gfgi~~~~~~~~~~~ 396 (411)
...+|+++--+..+++.
T Consensus 209 ~l~lgvgidy~i~l~~r 225 (333)
T PF03176_consen 209 VLLLGVGIDYSIHLINR 225 (333)
T ss_pred hhHHHhhhhhHHHHHHH
Confidence 34556655555555543
No 133
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=26.57 E-value=67 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcch
Q 015199 347 TYAALEFALVAVAVHLLYTILHLK 370 (411)
Q Consensus 347 ~yA~~qf~lv~l~~~ify~~l~~~ 370 (411)
+|++ |+|++|.|+||++..-+
T Consensus 88 lYti---GI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 88 LYTI---GIVLFILYTLFKIKKKK 108 (152)
T ss_pred HHHH---HHHHHHHHHHHHHHhcC
Confidence 5888 99999999999987543
No 134
>PRK04164 hypothetical protein; Provisional
Probab=26.42 E-value=86 Score=29.60 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhh
Q 015199 342 REYIWTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFT 398 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~ 398 (411)
--.||++|+- .++-.+-+...+ +|--.|||+++-..+.+++++.
T Consensus 46 e~~i~i~~~~---------~v~~~l~~~~~~----~aYa~Gf~~g~~Vg~~ied~l~ 89 (181)
T PRK04164 46 EVLIYVVALG---------LVFQNLDNPQNI----IAYALGFAVGIYVGMKIEEKLA 89 (181)
T ss_pred HHHHHHHHHH---------HHHhCCccHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888883 333333333333 3444699999999998888764
No 135
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=26.30 E-value=1.9e+02 Score=29.27 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 015199 339 LAIREYIWTYAALEFALVAVAVHLLYTILHLKAI 372 (411)
Q Consensus 339 ~~~r~yiW~yA~~qf~lv~l~~~ify~~l~~~~v 372 (411)
+....|---|.++=.+|+|-|.-||||+-...+.
T Consensus 166 lARNFYNlr~lALflAFaINFILLFYKVs~~~~~ 199 (274)
T PF06459_consen 166 LARNFYNLRFLALFLAFAINFILLFYKVSTSPPE 199 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3455677778888889999999999998766544
No 136
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.00 E-value=2.2e+02 Score=25.73 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=27.8
Q ss_pred cccceeehhhhHHHHHHHHHHHHhh---ccccchhhHhhhhhHH
Q 015199 286 AWQDFVVLVLISTICYFFFLEQILI---HDLKTQAIVLAAPFAF 326 (411)
Q Consensus 286 ~Wq~f~VLVliS~l~yf~fleqLlv---~~~~t~Ai~islpfs~ 326 (411)
.|.+.++.+++-+-+.|+++..+-+ .|.+++-.+-+.+-.+
T Consensus 5 ~~~~il~~~lll~G~~f~l~gaiGllRfPD~ytRlHAaTKa~Tl 48 (126)
T PRK12592 5 LFTDIVSLVFILSGAFLSFSASIGLIRFRDTMSRVHAITKPQTT 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHcccchhhhhH
Confidence 4566666666667778888776633 6889977777765443
No 137
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=25 Score=37.30 Aligned_cols=50 Identities=22% Similarity=0.425 Sum_probs=35.2
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
-.+-.|-||..... ++..+||.-.- =..|+++=+. .+..|++|+.++...
T Consensus 82 ~sef~c~vc~~~l~--~pv~tpcghs~-----c~~Cl~r~ld--~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--PPVVTPCGHSF-----CLECLDRSLD--QETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcC--CCccccccccc-----cHHHHHHHhc--cCCCCcccccccccc
Confidence 56778999976533 47788997433 3347777333 578999999999864
No 138
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=24.83 E-value=38 Score=35.21 Aligned_cols=51 Identities=20% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
.....|++|-.- --+-..+..|-| -+=+.||.+.+.. +.+|+.|+-.....
T Consensus 13 n~~itC~LC~GY-liDATTI~eCLH-----TFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGY-LIDATTITECLH-----TFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccce-eecchhHHHHHH-----HHHHHHHHHHHHH--hccCCccceeccCc
Confidence 346789999432 222345778864 5667999999988 67999999887654
No 139
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=24.51 E-value=3e+02 Score=32.35 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=46.1
Q ss_pred HHhhccccchhhHhhhhhHHHHHHHH-HHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015199 307 QILIHDLKTQAIVLAAPFAFTLGILS-SIFAVILA--------IREYIWTYAALEFALVAVAVHLLYTILHLKAIYAILL 377 (411)
Q Consensus 307 qLlv~~~~t~Ai~islpfs~vlglls-si~~~~~~--------~r~yiW~yA~~qf~lv~l~~~ify~~l~~~~v~ai~l 377 (411)
.+|.+++..-|-.+++=|..-++..- +++.-++. .|||-|.+..+--.| .++..|..-|- =|++|+++
T Consensus 560 gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sL--C~~iMF~~SWy-yAlvAm~~ 636 (1075)
T KOG2082|consen 560 GILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASL--CLAIMFISSWY-YALVAMLI 636 (1075)
T ss_pred hheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 45678888888888876665553332 33333333 499999998864433 23333322222 24555554
Q ss_pred HhhhccceeeehhHHHHHhhhhhh
Q 015199 378 SSLLGFGAAMSLNSLYIQYFTWRV 401 (411)
Q Consensus 378 a~~~gfgi~~~~~~~~~~~~~wr~ 401 (411)
| .+|-.|+.||.
T Consensus 637 a------------~~IYKYiEykG 648 (1075)
T KOG2082|consen 637 A------------GVIYKYIEYKG 648 (1075)
T ss_pred H------------HHHHHHHhhcc
Confidence 3 46677777775
No 140
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.36 E-value=2.1e+02 Score=28.26 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=7.3
Q ss_pred HhhhhhHHHHHHH
Q 015199 319 VLAAPFAFTLGIL 331 (411)
Q Consensus 319 ~islpfs~vlgll 331 (411)
..+++|+++.|++
T Consensus 46 ~~ai~~glvwgl~ 58 (301)
T PF14362_consen 46 WAAIPFGLVWGLV 58 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666555554
No 141
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=24.11 E-value=3.9e+02 Score=29.38 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=13.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHH
Q 015199 318 IVLAAPFAFTLGILSSIFAVIL 339 (411)
Q Consensus 318 i~islpfs~vlgllssi~~~~~ 339 (411)
++..+|+.++..++-++++-.|
T Consensus 441 ~l~~lp~~~~~~~if~~i~Y~~ 462 (617)
T TIGR00955 441 TIAELPLFIILPALFTSITYWM 462 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhhee
Confidence 4455888887765544444443
No 142
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=23.85 E-value=3.7e+02 Score=22.60 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.5
Q ss_pred CCccCCCcceeccc
Q 015199 242 NKNCEVCGKEVQNL 255 (411)
Q Consensus 242 ~~~CElCk~~y~~~ 255 (411)
..+|+.|+.+|...
T Consensus 8 ~~~C~~CG~d~~~~ 21 (86)
T PF06170_consen 8 APRCPHCGLDYSHA 21 (86)
T ss_pred CCcccccCCccccC
Confidence 45999999999853
No 143
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=23.60 E-value=1.8e+02 Score=27.26 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 015199 343 EYIWTYAALEFALVAVAVHLLYTILHLK 370 (411)
Q Consensus 343 ~yiW~yA~~qf~lv~l~~~ify~~l~~~ 370 (411)
.|+|+.++ .-++|+.--.|..++++
T Consensus 65 ~yl~ial~---nAvlLI~WA~YN~~RF~ 89 (153)
T PRK14584 65 LYLAIAAF---NAVLLIIWAKYNQVRFQ 89 (153)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 37777666 67777777778777764
No 144
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.13 E-value=41 Score=19.81 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=7.7
Q ss_pred ccCCCcceecc
Q 015199 244 NCEVCGKEVQN 254 (411)
Q Consensus 244 ~CElCk~~y~~ 254 (411)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999999885
No 145
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=22.88 E-value=4.7e+02 Score=22.09 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 015199 349 AALEFALVAVAV 360 (411)
Q Consensus 349 A~~qf~lv~l~~ 360 (411)
++++|++|++..
T Consensus 71 ~~~~~avv~~~~ 82 (237)
T PF02932_consen 71 ASLEFAVVVYNI 82 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhhhhhhh
Confidence 444555444444
No 146
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.08 E-value=30 Score=35.79 Aligned_cols=32 Identities=31% Similarity=0.684 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhccccchhhHhhhhhHHHH
Q 015199 293 LVLISTICYFFFLEQILIHDLKTQAIVLAAPFAFTL 328 (411)
Q Consensus 293 LVliS~l~yf~fleqLlv~~~~t~Ai~islpfs~vl 328 (411)
|.++.++.|||.+ -+|.-..|..+--.|+.++
T Consensus 31 lll~ail~w~~ii----msd~t~~a~~vl~sfAvvl 62 (381)
T PF05297_consen 31 LLLVAILVWFFII----MSDLTQGALTVLYSFAVVL 62 (381)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHH----HhccccchHHHHHHHHHHH
Confidence 3344555555533 4566556655555555555
No 147
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.87 E-value=5.3e+02 Score=28.80 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHhhhccceeeehhHH
Q 015199 353 FALVAVAVHLLYTILHLKAIYAILLSSLLGFGAAMSLNSL 392 (411)
Q Consensus 353 f~lv~l~~~ify~~l~~~~v~ai~la~~~gfgi~~~~~~~ 392 (411)
+++++++..++|..++.+....+..+.-.++|++++.-.+
T Consensus 126 ~~l~~~~~lLi~~~~~~~~~~~l~~~~a~~lgl~lsafwL 165 (616)
T PF10131_consen 126 TGLALIVFLLIYLIQRKRFKRNLIKLVAIVLGLLLSAFWL 165 (616)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333333333334556666554433
No 148
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.56 E-value=3.9e+02 Score=32.30 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhcchh
Q 015199 357 AVAVHLLYTILHLKA 371 (411)
Q Consensus 357 ~l~~~ify~~l~~~~ 371 (411)
+++-|+.|||+-++.
T Consensus 714 ~l~y~~~~R~l~i~~ 728 (1109)
T PRK10929 714 LVVYHIIRRWMLIQR 728 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344567777765543
No 149
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=21.47 E-value=3.8e+02 Score=31.13 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.6
Q ss_pred hhccceeeehhHHHHHhhh
Q 015199 380 LLGFGAAMSLNSLYIQYFT 398 (411)
Q Consensus 380 ~~gfgi~~~~~~~~~~~~~ 398 (411)
..+||+++--.-.+++.++
T Consensus 239 ~l~lGl~vDy~I~lv~r~~ 257 (910)
T TIGR00833 239 ALVIGAGTDYAVFLTGRYH 257 (910)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666655555555544
No 150
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.13 E-value=3e+02 Score=31.90 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015199 342 REYIWTYAALEFALVAVAVHLLYTILHL 369 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~ify~~l~~ 369 (411)
=+|.|+|+.+-+|+...|.-||=..-+.
T Consensus 544 ~RF~~IY~Vfl~GFsqAfy~if~~~~~~ 571 (782)
T KOG3676|consen 544 FRFLLIYLVFLVGFSQAFYSIFQTCDRD 571 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 5799999999999888877777555444
No 151
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=21.04 E-value=4.6e+02 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhc
Q 015199 346 WTYAALEFALVAVAVHLLYTILHLKAIYAILLSSLLG 382 (411)
Q Consensus 346 W~yA~~qf~lv~l~~~ify~~l~~~~v~ai~la~~~g 382 (411)
++.-.++.|+++-..-++..++++++.+..++++...
T Consensus 99 ~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~ls 135 (183)
T PF12263_consen 99 DVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAKALS 135 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456678899999999999999999999999998653
No 152
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=20.98 E-value=3.6e+02 Score=30.28 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhcchhHHHHHHH
Q 015199 344 YIWTYAALEFALVAVAVHLLYT---ILHLKAIYAILLS 378 (411)
Q Consensus 344 yiW~yA~~qf~lv~l~~~ify~---~l~~~~v~ai~la 378 (411)
|+.-+..+|+++.+++.|+=|- +.|+.-|++|+.-
T Consensus 261 ~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFc 298 (575)
T KOG1965|consen 261 YLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFC 298 (575)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4445899999999999988765 6899999999873
No 153
>COG1320 MnhG Multisubunit Na+/H+ antiporter, MnhG subunit [Inorganic ion transport and metabolism]
Probab=20.73 E-value=4.2e+02 Score=23.54 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=42.0
Q ss_pred ehhhhHHHHHHHHHHHHhh---ccccchhhHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015199 292 VLVLISTICYFFFLEQILI---HDLKTQAIVLAAPFAFTLGILSSIFAVILAIREYIWTYAALEFALVAVAVHLLYTILH 368 (411)
Q Consensus 292 VLVliS~l~yf~fleqLlv---~~~~t~Ai~islpfs~vlgllssi~~~~~~~r~yiW~yA~~qf~lv~l~~~ify~~l~ 368 (411)
+.+++-.-+.|.|+..+-+ -|.|++..+-+..- ++|....++.+.+ |.|....+ |.+-.++.-+|+-+.
T Consensus 8 ~~~~lliGa~~~l~aaiGl~R~PD~YtRlHaatk~~--t~G~~~~llgv~i----~~~~~~~~-~~~~~il~~lfi~lt- 79 (113)
T COG1320 8 VSILLLIGALFSLLAAIGLLRFPDVYTRLHAATKAT--TLGAGLLLLGVII----YFLSLLGF-FALKLILLALFILLT- 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCchHHHHHHhccccc--cccHHHHHHHHHH----HHHHHhhH-HHHHHHHHHHHHHHH-
Confidence 3344444455566665532 47788887765533 3333333333331 22221111 355555555665553
Q ss_pred chhHHHHHHHhhh
Q 015199 369 LKAIYAILLSSLL 381 (411)
Q Consensus 369 ~~~v~ai~la~~~ 381 (411)
+||.+.+++.-+
T Consensus 80 -~Pv~ah~iarAa 91 (113)
T COG1320 80 -APVGAHAIARAA 91 (113)
T ss_pred -hHHHHHHHHHHH
Confidence 899999887643
No 154
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.72 E-value=46 Score=22.23 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.1
Q ss_pred CCccCCCcceec
Q 015199 242 NKNCEVCGKEVQ 253 (411)
Q Consensus 242 ~~~CElCk~~y~ 253 (411)
.+.|+.|+|+|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 569999999885
No 155
>PF15013 CCSMST1: CCSMST1 family
Probab=20.44 E-value=57 Score=27.30 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=14.2
Q ss_pred cccceeehh--hhHHHHHHHHHHH
Q 015199 286 AWQDFVVLV--LISTICYFFFLEQ 307 (411)
Q Consensus 286 ~Wq~f~VLV--liS~l~yf~fleq 307 (411)
.|-...++. ++..+.|||||..
T Consensus 29 PWyq~~~is~sl~~fliyFC~lRe 52 (77)
T PF15013_consen 29 PWYQVYPISLSLAAFLIYFCFLRE 52 (77)
T ss_pred cceeeehhHHHHHHHHHHHhhccc
Confidence 455544433 3667799999974
No 156
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=20.42 E-value=3.1e+02 Score=21.52 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHhhccccchhhHhhhhhHHHHHHHHHHHHH
Q 015199 294 VLISTICYFFFLEQILIHDLKTQAIVLAAPFAFTLGILSSIFAV 337 (411)
Q Consensus 294 VliS~l~yf~fleqLlv~~~~t~Ai~islpfs~vlgllssi~~~ 337 (411)
.++++++.+-.+++|...|+ -++..++--..++|.|+.||++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~--l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNF--LGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888766553 3444555555666776666544
No 157
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=20.01 E-value=2.3e+02 Score=28.55 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 015199 342 REYIWTYAALEFALVAVAVHLLYTILHLK 370 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~ify~~l~~~ 370 (411)
...+|+..++-||-+..-+||+++++++.
T Consensus 74 ssi~Wivll~~lGsi~t~~Yl~i~l~~L~ 102 (254)
T PF07343_consen 74 SSIFWIVLLICLGSIATCAYLVIQLLKLS 102 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 56789999999999999999999999985
Done!