Query 015199
Match_columns 411
No_of_seqs 258 out of 882
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 2.1E-18 7E-23 132.2 4.0 56 197-254 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 3.1E-17 1.1E-21 132.1 3.6 61 194-254 10-70 (80)
3 2kiz_A E3 ubiquitin-protein li 98.3 5.3E-07 1.8E-11 68.1 4.4 56 192-254 7-63 (69)
4 1x4j_A Ring finger protein 38; 98.2 4.7E-07 1.6E-11 69.8 3.0 52 195-253 19-71 (75)
5 2ep4_A Ring finger protein 24; 98.2 1.3E-06 4.4E-11 66.8 4.7 52 197-255 13-65 (74)
6 2l0b_A E3 ubiquitin-protein li 98.1 1.2E-06 3.9E-11 70.6 3.6 51 196-253 37-88 (91)
7 2ect_A Ring finger protein 126 98.1 1E-06 3.6E-11 68.0 1.6 55 193-254 9-64 (78)
8 2ct2_A Tripartite motif protei 98.0 4.1E-06 1.4E-10 65.4 4.8 56 194-254 10-68 (88)
9 2ecl_A Ring-box protein 2; RNF 98.0 2E-06 6.9E-11 68.0 2.5 49 199-254 15-76 (81)
10 2ecm_A Ring finger and CHY zin 98.0 2.3E-06 7.8E-11 61.6 2.3 50 197-253 3-54 (55)
11 1v87_A Deltex protein 2; ring- 98.0 4.2E-06 1.4E-10 69.0 4.1 51 199-254 25-94 (114)
12 1iym_A EL5; ring-H2 finger, ub 98.0 1.7E-06 5.7E-11 62.4 1.1 50 197-253 3-54 (55)
13 2ea6_A Ring finger protein 4; 97.9 3.9E-06 1.3E-10 62.6 1.8 51 196-253 12-67 (69)
14 2yur_A Retinoblastoma-binding 97.8 8.4E-06 2.9E-10 62.9 3.0 51 196-253 12-63 (74)
15 2csy_A Zinc finger protein 183 97.8 1.8E-05 6E-10 61.7 4.5 51 194-253 10-60 (81)
16 2d8t_A Dactylidin, ring finger 97.8 1.1E-05 3.7E-10 61.5 2.9 51 195-254 11-61 (71)
17 3dpl_R Ring-box protein 1; ubi 97.8 1.2E-05 4.1E-10 67.5 3.4 48 199-253 37-100 (106)
18 2ysl_A Tripartite motif-contai 97.7 2.1E-05 7.3E-10 59.5 4.0 53 195-254 16-69 (73)
19 2ecw_A Tripartite motif-contai 97.7 3.3E-05 1.1E-09 59.5 4.7 52 196-254 16-71 (85)
20 1chc_A Equine herpes virus-1 r 97.7 1.8E-05 6.2E-10 59.3 3.0 50 197-254 3-52 (68)
21 3ztg_A E3 ubiquitin-protein li 97.7 3.2E-05 1.1E-09 61.3 4.3 54 193-253 7-61 (92)
22 2ct0_A Non-SMC element 1 homol 97.7 1.7E-05 5.8E-10 63.2 2.7 51 197-254 13-64 (74)
23 2ecy_A TNF receptor-associated 97.7 2.2E-05 7.6E-10 58.8 3.1 51 196-254 12-62 (66)
24 3ng2_A RNF4, snurf, ring finge 97.7 1.5E-05 5.1E-10 60.0 2.1 53 195-254 6-63 (71)
25 2ecn_A Ring finger protein 141 97.7 7.1E-06 2.4E-10 62.0 0.2 48 197-254 13-60 (70)
26 2ecv_A Tripartite motif-contai 97.5 5.7E-05 1.9E-09 58.1 4.0 52 196-254 16-71 (85)
27 2ysj_A Tripartite motif-contai 97.5 0.0001 3.6E-09 54.5 5.2 47 195-248 16-63 (63)
28 2djb_A Polycomb group ring fin 97.5 5.9E-05 2E-09 57.5 3.9 49 197-254 13-62 (72)
29 2ecj_A Tripartite motif-contai 97.5 6.6E-05 2.3E-09 54.2 3.8 46 196-248 12-58 (58)
30 2xeu_A Ring finger protein 4; 97.5 3.2E-05 1.1E-09 56.7 2.0 50 198-254 2-56 (64)
31 1t1h_A Gspef-atpub14, armadill 97.5 6.3E-05 2.2E-09 57.9 3.2 52 195-254 4-55 (78)
32 4a0k_B E3 ubiquitin-protein li 97.4 2.9E-05 1E-09 66.6 0.5 48 200-254 49-112 (117)
33 2egp_A Tripartite motif-contai 97.3 4.3E-05 1.5E-09 58.5 0.7 52 196-254 9-65 (79)
34 1e4u_A Transcriptional repress 97.2 0.00017 5.8E-09 57.2 3.5 57 197-257 9-65 (78)
35 4ayc_A E3 ubiquitin-protein li 97.2 4.9E-05 1.7E-09 65.2 -0.4 49 198-255 52-100 (138)
36 3lrq_A E3 ubiquitin-protein li 97.1 0.00014 4.9E-09 59.2 1.5 51 196-254 19-70 (100)
37 1g25_A CDK-activating kinase a 97.0 0.00021 7.1E-09 53.3 2.0 51 198-254 2-55 (65)
38 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00025 8.6E-09 71.5 2.5 56 195-253 304-372 (381)
39 3fl2_A E3 ubiquitin-protein li 97.0 0.0002 6.7E-09 60.1 1.5 50 197-254 50-99 (124)
40 2y43_A E3 ubiquitin-protein li 96.8 0.00024 8.3E-09 57.2 0.9 49 197-254 20-69 (99)
41 2ckl_B Ubiquitin ligase protei 96.8 0.00049 1.7E-08 60.4 2.8 49 197-253 52-101 (165)
42 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00037 1.3E-08 57.5 1.7 54 197-257 5-63 (133)
43 1jm7_A BRCA1, breast cancer ty 96.8 0.0005 1.7E-08 55.9 2.4 50 198-254 20-70 (112)
44 2ckl_A Polycomb group ring fin 96.8 0.00044 1.5E-08 56.6 1.9 49 197-254 13-62 (108)
45 1rmd_A RAG1; V(D)J recombinati 96.7 0.00049 1.7E-08 56.9 1.4 51 196-254 20-70 (116)
46 2y1n_A E3 ubiquitin-protein li 96.6 0.0011 3.6E-08 67.4 3.5 51 197-255 330-380 (389)
47 3hct_A TNF receptor-associated 96.5 0.0013 4.4E-08 54.8 3.2 52 195-254 14-65 (118)
48 1z6u_A NP95-like ring finger p 96.5 0.0012 4E-08 58.0 2.8 50 197-254 76-125 (150)
49 2vje_B MDM4 protein; proto-onc 96.4 0.0011 3.6E-08 50.1 1.7 53 194-254 2-56 (63)
50 3l11_A E3 ubiquitin-protein li 96.4 0.00036 1.2E-08 57.6 -1.2 50 197-254 13-62 (115)
51 4ap4_A E3 ubiquitin ligase RNF 96.3 0.0013 4.5E-08 54.2 2.0 51 197-254 70-125 (133)
52 2kre_A Ubiquitin conjugation f 96.1 0.0078 2.7E-07 49.6 5.4 52 194-254 24-75 (100)
53 2kr4_A Ubiquitin conjugation f 96.0 0.0059 2E-07 48.6 4.1 50 196-254 11-60 (85)
54 1wgm_A Ubiquitin conjugation f 95.9 0.0076 2.6E-07 49.5 4.5 52 195-254 18-69 (98)
55 2c2l_A CHIP, carboxy terminus 95.5 0.0065 2.2E-07 55.9 3.2 50 197-254 206-255 (281)
56 4ic3_A E3 ubiquitin-protein li 95.5 0.0017 5.8E-08 50.2 -0.6 45 197-254 22-67 (74)
57 2vje_A E3 ubiquitin-protein li 95.4 0.0066 2.3E-07 45.8 2.2 48 198-254 7-57 (64)
58 3nw0_A Non-structural maintena 95.2 0.0089 3E-07 56.6 3.0 50 198-254 179-229 (238)
59 1bor_A Transcription factor PM 95.1 0.003 1E-07 46.3 -0.5 46 197-254 4-49 (56)
60 1jm7_B BARD1, BRCA1-associated 95.1 0.0022 7.5E-08 53.3 -1.5 46 197-253 20-66 (117)
61 2ea5_A Cell growth regulator w 94.9 0.015 5E-07 44.6 3.0 51 193-255 9-59 (68)
62 3knv_A TNF receptor-associated 94.7 0.0048 1.6E-07 53.7 -0.3 51 195-253 27-77 (141)
63 3hcs_A TNF receptor-associated 94.1 0.024 8.2E-07 49.6 2.7 51 196-254 15-65 (170)
64 2f42_A STIP1 homology and U-bo 93.9 0.027 9.2E-07 51.5 2.8 51 196-254 103-153 (179)
65 2ecg_A Baculoviral IAP repeat- 93.9 0.007 2.4E-07 46.6 -1.0 45 197-254 23-68 (75)
66 2yu4_A E3 SUMO-protein ligase 93.5 0.051 1.8E-06 43.7 3.5 49 196-251 4-59 (94)
67 1wim_A KIAA0161 protein; ring 92.8 0.05 1.7E-06 43.3 2.4 51 197-252 3-62 (94)
68 3htk_C E3 SUMO-protein ligase 91.4 0.12 4.3E-06 50.1 3.7 51 197-254 179-232 (267)
69 3t6p_A Baculoviral IAP repeat- 90.9 0.03 1E-06 55.7 -1.1 45 197-254 293-338 (345)
70 2lri_C Autoimmune regulator; Z 88.6 0.13 4.4E-06 39.8 1.0 55 192-253 5-61 (66)
71 2yho_A E3 ubiquitin-protein li 88.5 0.071 2.4E-06 41.8 -0.5 47 197-255 16-62 (79)
72 2bay_A PRE-mRNA splicing facto 85.5 0.39 1.3E-05 36.1 2.1 46 200-254 4-50 (61)
73 2l43_A N-teminal domain from h 76.1 0.55 1.9E-05 38.0 0.1 54 196-252 22-76 (88)
74 1weu_A Inhibitor of growth fam 75.5 1.2 4.2E-05 36.5 2.0 55 191-252 28-86 (91)
75 1weo_A Cellulose synthase, cat 70.3 3.9 0.00013 34.0 3.8 51 198-254 15-70 (93)
76 1wen_A Inhibitor of growth fam 67.8 0.66 2.3E-05 36.2 -1.2 55 191-252 8-66 (71)
77 2ku3_A Bromodomain-containing 65.1 0.8 2.7E-05 35.8 -1.2 52 197-251 14-66 (71)
78 1wev_A Riken cDNA 1110020M19; 64.4 0.23 8E-06 40.1 -4.6 56 195-253 12-74 (88)
79 3u5n_A E3 ubiquitin-protein li 63.3 0.61 2.1E-05 42.6 -2.6 51 196-253 4-56 (207)
80 2l5u_A Chromodomain-helicase-D 60.8 1.6 5.3E-05 32.8 -0.3 49 196-251 8-58 (61)
81 2k16_A Transcription initiatio 60.3 1.3 4.3E-05 34.2 -0.9 54 196-253 15-70 (75)
82 2ri7_A Nucleosome-remodeling f 57.0 1.6 5.4E-05 38.4 -1.0 53 196-252 5-60 (174)
83 2vnf_A ING 4, P29ING4, inhibit 56.2 0.51 1.7E-05 35.6 -3.7 50 194-250 5-58 (60)
84 2jmi_A Protein YNG1, ING1 homo 54.8 0.62 2.1E-05 38.2 -3.7 52 192-250 19-75 (90)
85 1f62_A Transcription factor WS 53.0 2.9 9.9E-05 29.8 0.0 47 200-250 1-49 (51)
86 3ql9_A Transcriptional regulat 50.8 10 0.00035 32.9 3.2 48 196-250 54-110 (129)
87 1wep_A PHF8; structural genomi 48.2 7 0.00024 30.4 1.6 53 196-252 9-64 (79)
88 2lbm_A Transcriptional regulat 38.4 14 0.00049 32.5 2.2 47 197-250 61-116 (142)
89 2ysm_A Myeloid/lymphoid or mix 37.5 4.3 0.00015 33.3 -1.3 39 196-238 4-42 (111)
90 3o36_A Transcription intermedi 37.1 2.9 0.0001 37.2 -2.5 49 197-252 2-52 (184)
91 4gne_A Histone-lysine N-methyl 36.9 4.9 0.00017 33.8 -1.0 48 193-247 9-58 (107)
92 2e6r_A Jumonji/ARID domain-con 34.9 1.7 5.8E-05 35.3 -4.1 53 194-251 11-66 (92)
93 3ixz_A Potassium-transporting 32.1 65 0.0022 35.9 6.6 59 342-403 962-1022(1034)
94 2vpb_A Hpygo1, pygopus homolog 31.7 16 0.00055 27.8 1.2 35 195-233 4-40 (65)
95 2g6q_A Inhibitor of growth pro 31.2 1.4 4.8E-05 33.5 -4.8 50 194-250 6-59 (62)
96 2ko5_A Ring finger protein Z; 30.9 14 0.00047 31.1 0.7 46 199-254 28-73 (99)
97 1mm2_A MI2-beta; PHD, zinc fin 30.6 3.6 0.00012 30.8 -2.6 49 196-251 6-56 (61)
98 2yt5_A Metal-response element- 30.2 9.3 0.00032 28.4 -0.4 53 196-251 3-61 (66)
99 1x4i_A Inhibitor of growth pro 30.2 5.5 0.00019 30.8 -1.7 52 196-252 3-56 (70)
100 4hg6_A Cellulose synthase subu 29.0 1.3E+02 0.0044 32.4 8.1 26 342-367 61-86 (802)
101 3kv5_D JMJC domain-containing 28.7 6 0.00021 41.0 -2.2 52 197-252 35-89 (488)
102 1wem_A Death associated transc 28.6 40 0.0014 25.8 3.0 52 195-251 12-70 (76)
103 2xb1_A Pygopus homolog 2, B-ce 26.2 11 0.00037 31.2 -0.7 51 200-253 4-63 (105)
104 1we9_A PHD finger family prote 25.5 15 0.00052 27.1 0.1 53 196-251 3-58 (64)
105 3v43_A Histone acetyltransfera 25.3 29 0.001 28.5 1.8 35 198-235 4-43 (112)
106 2yql_A PHD finger protein 21A; 25.1 3.1 0.00011 30.5 -3.7 49 195-250 5-55 (56)
107 2kdr_X NS4B, P27, non-structur 24.9 79 0.0027 20.9 3.4 23 325-347 5-27 (28)
108 2lv9_A Histone-lysine N-methyl 24.8 11 0.00038 30.6 -0.8 49 198-251 27-76 (98)
109 3vk6_A E3 ubiquitin-protein li 24.3 43 0.0015 28.1 2.6 34 216-255 17-50 (101)
110 3c6w_A P28ING5, inhibitor of g 23.4 2.3 7.9E-05 31.9 -4.8 48 196-250 6-57 (59)
111 3udc_A Small-conductance mecha 23.2 2.6E+02 0.0088 26.2 8.2 37 363-399 84-120 (285)
112 1wew_A DNA-binding family prot 22.1 63 0.0022 24.9 3.1 56 190-251 7-72 (78)
113 1xwh_A Autoimmune regulator; P 21.6 5.7 0.00019 30.1 -3.0 48 196-250 5-54 (66)
114 3aqp_A Probable secdf protein- 20.3 2.1E+02 0.007 30.8 7.6 25 377-401 329-353 (741)
115 1fp0_A KAP-1 corepressor; PHD 20.2 15 0.00051 29.9 -1.0 49 196-251 22-72 (88)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.72 E-value=2.1e-18 Score=132.20 Aligned_cols=56 Identities=34% Similarity=0.789 Sum_probs=50.4
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..||||+++. ++++++||+|+|++++||++||.+|+.++++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5678999999863 4568999999999999999999999999999999999999973
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=132.10 Aligned_cols=61 Identities=28% Similarity=0.719 Sum_probs=54.6
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+.++++..|+||+++.++++++++||+|+|+++++|++||++|+..+++.+||+|+++|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445677899999887777889999999999999999999999999988999999999974
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.30 E-value=5.3e-07 Score=68.12 Aligned_cols=56 Identities=30% Similarity=0.795 Sum_probs=43.0
Q ss_pred CccccCCCCeeeEecccCCCC-CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 192 DEEIAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 192 ~ed~~eee~~CRICl~~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..+++..|.||++....+ ....+||. +.+|..|+.+|+..+. .|++|+..+..
T Consensus 7 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 7 EGTEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp TCCSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred CcCcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 334456677899999876543 45678886 4799999999998754 79999998874
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=4.7e-07 Score=69.75 Aligned_cols=52 Identities=19% Similarity=0.635 Sum_probs=41.2
Q ss_pred ccCCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 195 IAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
..+++..|.||++..+.++. ..+||. +.+|..|+.+|++.+ ..|++|++++.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 34567889999987655444 568886 479999999999874 59999998875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-06 Score=66.84 Aligned_cols=52 Identities=25% Similarity=0.685 Sum_probs=40.3
Q ss_pred CCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
+++..|.||++...+++. .++||. +.+|..|+.+|++.+ ..|++|++++..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCcccccc
Confidence 446789999987654443 356875 479999999999875 4999999988754
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=70.55 Aligned_cols=51 Identities=24% Similarity=0.642 Sum_probs=40.7
Q ss_pred cCCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+++..|.||++....++. ..+||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 4567889999987665554 568886 589999999999754 59999998875
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.05 E-value=1e-06 Score=67.97 Aligned_cols=55 Identities=25% Similarity=0.713 Sum_probs=42.1
Q ss_pred ccccCCCCeeeEecccCCCCCe-ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 193 EEIAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
++..+++..|.||++....++. ..+||. +.+|..|+.+|+..+ ..|++|+.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 3444567889999987654433 457886 479999999999754 699999999874
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=65.43 Aligned_cols=56 Identities=18% Similarity=0.490 Sum_probs=43.8
Q ss_pred cccCCCCeeeEecccCCCCC--eecccccccCCccccCHHHHHHHHHhc-CCCccCCCcceecc
Q 015199 194 EIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~s-~~~~CElCk~~y~~ 254 (411)
+..+++..|.||++...+++ +..+||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34455678999998765433 6778885 589999999999876 45799999998764
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=2e-06 Score=67.96 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=35.6
Q ss_pred CCeeeEecccCCC-----------CC-eeccc-ccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 199 EAVCRICLDICEE-----------GN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~ee-----------g~-~Li~P-C~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+..|-||++..++ ++ ....| |. +.+|.+|+.+|+..+ .+|++|++++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 4558888765432 22 34454 76 589999999999875 499999998764
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.99 E-value=2.3e-06 Score=61.59 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=39.5
Q ss_pred CCCCeeeEecccCCC--CCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEE--GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~ee--g~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+++..|.||++...+ ......||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 456789999987543 235678886 489999999999886 69999998764
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.99 E-value=4.2e-06 Score=68.97 Aligned_cols=51 Identities=22% Similarity=0.497 Sum_probs=38.4
Q ss_pred CCeeeEecccCCCCC----------------eecccccccCCccccCHHHHHHHHHh---cCCCccCCCcceecc
Q 015199 199 EAVCRICLDICEEGN----------------TLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~eeg~----------------~Li~PC~CkGslk~VH~~CL~kWl~~---s~~~~CElCk~~y~~ 254 (411)
+..|-||++..++.. ....||. +.+|..||.+|+.. +....|++|+..|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 358999997753311 1157887 58999999999975 346799999999874
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.96 E-value=1.7e-06 Score=62.45 Aligned_cols=50 Identities=26% Similarity=0.705 Sum_probs=38.3
Q ss_pred CCCCeeeEecccCCCCC-eeccc-ccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~-~Li~P-C~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+++..|-||++..++++ ....| |. +.+|..|+.+|++. +..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45667999998865544 45566 75 47999999999976 468999998764
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=3.9e-06 Score=62.59 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=39.0
Q ss_pred cCCCCeeeEecccCCC----CC-eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+++..|-||++...+ ++ ....||. +.+|..|+.+|+.. +..|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3556789999976432 12 2567886 48999999999987 459999999875
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.82 E-value=8.4e-06 Score=62.87 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=41.5
Q ss_pred cCCCCeeeEecccCCCCCeeccc-ccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+++..|.||++... ++..+| |. +.+|..|+.+|+..++...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 355678999987654 577788 76 4789999999999877789999999754
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1.8e-05 Score=61.67 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.0
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+..+++..|.||++... ++.++||. +.+|..|+.+|+.. ...|++|+..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQ--NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCC--SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhc--CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34455678999997653 47788987 47899999999976 569999999986
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.1e-05 Score=61.53 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=40.5
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
..+++..|.||++... ++...||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV--HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCS--SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccC--CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 3455678999997643 56778886 479999999999764 699999999874
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.77 E-value=1.2e-05 Score=67.51 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=35.7
Q ss_pred CCeeeEecccCCCC---------------C-eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 199 EAVCRICLDICEEG---------------N-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 199 e~~CRICl~~~eeg---------------~-~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+..|-||++..++. . ....||. +.+|..|+.+|+.. +.+|++|+.+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 45688998654321 1 2346776 58999999999986 569999999975
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2.1e-05 Score=59.53 Aligned_cols=53 Identities=28% Similarity=0.612 Sum_probs=41.5
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh-cCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-s~~~~CElCk~~y~~ 254 (411)
..+++..|.||++... ++...||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 16 ~~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3455778999998654 57777886 47999999999974 356799999998763
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.71 E-value=3.3e-05 Score=59.45 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=41.2
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc----CCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----GNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s----~~~~CElCk~~y~~ 254 (411)
-+++..|.||++... ++...||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLK--EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCS--SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhC--cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345678999997654 46678886 478999999999884 37899999998763
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.70 E-value=1.8e-05 Score=59.26 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=39.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++...+ .....||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC-CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456789999986542 24678986 479999999999765 599999999874
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.68 E-value=3.2e-05 Score=61.31 Aligned_cols=54 Identities=20% Similarity=0.515 Sum_probs=43.8
Q ss_pred ccccCCCCeeeEecccCCCCCeeccc-ccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
.+..+++-.|.||++... ++...| |. +.++..|+.+|+..++...|++|+..+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECS--SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhc--CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 344466789999997654 577888 75 4789999999999887889999999874
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=1.7e-05 Score=63.16 Aligned_cols=51 Identities=22% Similarity=0.690 Sum_probs=39.2
Q ss_pred CCCCeeeEecccCCCCCeecccc-cccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC-~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+....|-||++....+. -| .|. +-+|..|+.+||+.+++.+|++|++++..
T Consensus 13 ~~i~~C~IC~~~i~~g~----~C~~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ----SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE----ECSSSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC----ccCCCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45577999998765442 22 443 47899999999998877899999988764
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.2e-05 Score=58.83 Aligned_cols=51 Identities=20% Similarity=0.486 Sum_probs=39.7
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.+++..|.||++... ++...+|. +.+|..|+.+|+. +++..|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEES--SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhc--CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 355788999997654 45567886 4789999999996 446789999998763
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.66 E-value=1.5e-05 Score=59.95 Aligned_cols=53 Identities=23% Similarity=0.589 Sum_probs=40.1
Q ss_pred ccCCCCeeeEecccCCC----CC-eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.++++..|-||++...+ ++ ....||. +.+|..|+.+|++.+ ..|++|+..+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 34557789999976432 22 3578887 479999999999875 599999998863
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=7.1e-06 Score=61.99 Aligned_cols=48 Identities=25% Similarity=0.722 Sum_probs=39.0
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++...+ ..+||. +.+|..|+.+|+. .+..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456789999987543 678986 4799999999997 46799999998774
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=5.7e-05 Score=58.07 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=41.1
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh----cCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST----KGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~----s~~~~CElCk~~y~~ 254 (411)
.+++..|.||++... ++...||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345678999998654 46677886 47899999999987 347899999999873
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0001 Score=54.52 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=36.8
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc-CCCccCCC
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVC 248 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s-~~~~CElC 248 (411)
..+++..|.||++... ++...||. +.+|..|+.+|+... +...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455778999997654 46777886 479999999999864 46799998
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=5.9e-05 Score=57.54 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCCeeeEecccCCCCCeec-ccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++.. .||. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH--CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 45678999997654 3555 4887 47899999999977 4699999999874
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=6.6e-05 Score=54.22 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=35.9
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh-cCCCccCCC
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVC 248 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-s~~~~CElC 248 (411)
.+++..|.||++... ++..+||. +.+|..|+.+|+.. +++..|++|
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999998754 35677886 47899999999875 457899998
No 30
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.51 E-value=3.2e-05 Score=56.71 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=38.4
Q ss_pred CCCeeeEecccCCC----C-CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEE----G-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~ee----g-~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
++..|.||++...+ + .....+|. +.+|..|+.+|+.. +..|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 45679999976432 1 23567886 47999999999987 4599999998874
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.46 E-value=6.3e-05 Score=57.87 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=41.5
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
...++-.|.||++... ++...||. +.++..|+.+|+.. ++.+|++|+..+..
T Consensus 4 ~~~~~~~C~IC~~~~~--~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMK--DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCS--SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CCcccCCCCCcccccc--CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 3456788999997654 57888886 47899999999964 46799999998763
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.38 E-value=2.9e-05 Score=66.63 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=0.0
Q ss_pred CeeeEecccCCC-------------C-C-e-ecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 200 AVCRICLDICEE-------------G-N-T-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 200 ~~CRICl~~~ee-------------g-~-~-Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+.|-||++..++ + + . +..||. +.+|..|+.+|+.. +.+|++|+.+|..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 479999876432 1 1 1 224666 58999999999987 4599999998763
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.32 E-value=4.3e-05 Score=58.53 Aligned_cols=52 Identities=27% Similarity=0.650 Sum_probs=41.1
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc-----CCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s-----~~~~CElCk~~y~~ 254 (411)
-+++..|.||++... ++...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 9 ~~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLT--EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECS--SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccC--CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 355788999998754 46677886 478999999999873 36899999999863
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.25 E-value=0.00017 Score=57.23 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=44.7
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccce
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~Pv 257 (411)
+++..|-||++..+..+....||.|. +.+++.|+.+|... ++..|++|+..|..-++
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence 45678999999765555677888884 46899999998754 56899999999986543
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.18 E-value=4.9e-05 Score=65.23 Aligned_cols=49 Identities=20% Similarity=0.645 Sum_probs=39.2
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
++..|.||++... ++...||. |.+|..|+.+|+.. +..|++|+..+...
T Consensus 52 ~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS--SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC--CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCC
Confidence 3457999997654 57788986 58999999999975 46899999988643
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.08 E-value=0.00014 Score=59.17 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.2
Q ss_pred cCCCCeeeEecccCCCCCeec-ccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
-+++..|.||++... ++.. .+|. +.+|..|+.+|+..++ ..|++|+..+..
T Consensus 19 l~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR--DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCCccCCcccc--CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 345678999998754 4766 8887 4799999999998864 699999999863
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.04 E-value=0.00021 Score=53.32 Aligned_cols=51 Identities=22% Similarity=0.519 Sum_probs=37.6
Q ss_pred CCCeeeEecc-cCCCCC--eecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLD-ICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~-~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
++..|.||++ ...+.. .+..||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3567999998 433221 2457887 47899999999864 46789999998863
No 38
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.99 E-value=0.00025 Score=71.54 Aligned_cols=56 Identities=27% Similarity=0.656 Sum_probs=40.4
Q ss_pred ccCCCCeeeEecccCCCCCee-ccccc---ccCCccccCHHHHHHHHHhcCC---------CccCCCcceec
Q 015199 195 IAEEEAVCRICLDICEEGNTL-KMECS---CKGALRLVHEECAIRWFSTKGN---------KNCEVCGKEVQ 253 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~L-i~PC~---CkGslk~VH~~CL~kWl~~s~~---------~~CElCk~~y~ 253 (411)
.+++...|-||++...++..+ ...|. |+ +.+|..||.+|++...+ ..|+.|++++.
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346678899999876542322 34464 54 58999999999987432 58999999776
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.98 E-value=0.0002 Score=60.07 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=40.0
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++...||. |.+|..|+.+|+. .+...|++|+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34578999997654 57778886 4789999999998 345699999999864
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.85 E-value=0.00024 Score=57.15 Aligned_cols=49 Identities=20% Similarity=0.545 Sum_probs=38.8
Q ss_pred CCCCeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++... ||. +.+|..|+.+|+.. +..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 45678999997654 46555 786 47999999999985 4699999998874
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.83 E-value=0.00049 Score=60.36 Aligned_cols=49 Identities=37% Similarity=0.802 Sum_probs=38.6
Q ss_pred CCCCeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+++..|.||++... ++... ||. +.+|..|+.+|+.. ++..|++|+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34568999997654 46655 886 48999999999984 3679999999985
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.80 E-value=0.00037 Score=57.52 Aligned_cols=54 Identities=22% Similarity=0.546 Sum_probs=41.2
Q ss_pred CCCCeeeEecccCCC----C-CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecccce
Q 015199 197 EEEAVCRICLDICEE----G-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (411)
Q Consensus 197 eee~~CRICl~~~ee----g-~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~Pv 257 (411)
.++..|-||++...+ + ....++|. +.+|.+|+.+|++.+ ..|++|+..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccccc
Confidence 456789999976432 1 23678887 489999999999764 499999999986543
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.79 E-value=0.0005 Score=55.88 Aligned_cols=50 Identities=20% Similarity=0.699 Sum_probs=39.3
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc-CCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s-~~~~CElCk~~y~~ 254 (411)
+...|.||++... ++...||. |.+|..|+.+|+..+ +...|++|+..+..
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4568999997654 46677886 478999999999864 45799999998763
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.77 E-value=0.00044 Score=56.56 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=39.5
Q ss_pred CCCCeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45678999997654 46665 887 478999999999764 799999999874
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.66 E-value=0.00049 Score=56.89 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=40.5
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
-+++..|.||++... ++...||. +.+|..|+.+|+... ...|++|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILA--DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhc--CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 345678999997654 57778886 478999999999874 4689999999864
No 46
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.58 E-value=0.0011 Score=67.44 Aligned_cols=51 Identities=20% Similarity=0.542 Sum_probs=40.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
+....|.||++.. .++...||.. .+|..|+.+|+.. +...|++|+..+...
T Consensus 330 ~~~~~C~ICle~~--~~pv~lpCGH-----~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAEND--KDVKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSB--CCEEEETTCC-----EECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCC--CCeEEeCCCC-----hhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3447999998764 3578899974 6799999999984 457999999998753
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.53 E-value=0.0013 Score=54.80 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.6
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.-+++..|.||++... ++...||. +.++..|+.+|+..++ ..|++|+..+..
T Consensus 14 ~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhc--CeEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 3445678999997654 56777876 4799999999998764 399999998864
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0012 Score=58.01 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=40.2
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++..+||. +.++..|+.+|+.. +...|++|+..+..
T Consensus 76 ~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVY--QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhc--CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 34578999997654 57778987 47899999999985 45689999999874
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.40 E-value=0.0011 Score=50.12 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=38.0
Q ss_pred cccCCCCeeeEecccCCCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+..+.+..|.||++... +..+ .||... .+-.+|+.+|... +..|++|+..+..
T Consensus 2 ~~~~~~~~C~IC~~~~~--~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 2 DCQNLLKPCSLCEKRPR--DGNIIHGRTGHL----VTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp -CGGGGSBCTTTSSSBS--CEEEEETTEEEE----EECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCCCcCCCCcccCCcCC--CeEEEecCCCCH----hHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 34556678999997643 3434 499731 2678999999865 3699999999864
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.36 E-value=0.00036 Score=57.60 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=39.8
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++...||. |.+|..|+.+|+.. ++..|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 44678999997654 57778886 47999999999964 35799999999874
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.32 E-value=0.0013 Score=54.16 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=38.2
Q ss_pred CCCCeeeEecccCCC----C-CeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEE----G-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~ee----g-~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|-||++...+ + .....+|. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 446679999976432 1 22456775 589999999999874 599999998864
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.08 E-value=0.0078 Score=49.57 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=41.3
Q ss_pred cccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+...++-.|-||++... +|.+.||. +.+-+.|+.+|+.. +.+|++|+..+..
T Consensus 24 ~~~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMT--DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCS--SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCccc--CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 34456789999987654 68999975 36789999999974 5799999998863
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.97 E-value=0.0059 Score=48.56 Aligned_cols=50 Identities=6% Similarity=0.103 Sum_probs=40.2
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
..++-.|-||++... +|.+.||. +.+-+.|+.+|+.. +.+|++|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT--DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc--CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 356789999987654 58999975 36789999999985 4699999998763
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.87 E-value=0.0076 Score=49.47 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=40.7
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
...++-.|-||++... +|.+.||. | +.+-+.|+.+|+.. +.+|++|+.++..
T Consensus 18 ~~p~~~~CpI~~~~m~--dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMC--DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCS--SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cCcHhcCCcCcccccc--CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3356789999987654 68888876 1 36779999999986 4699999998874
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.55 E-value=0.0065 Score=55.90 Aligned_cols=50 Identities=6% Similarity=0.027 Sum_probs=39.3
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.+.-.|-||++... +|.+.||. +.+-+.|+.+|+...+. +|++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc--CCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCch
Confidence 45678999987644 69999985 35678999999987543 49999998863
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.54 E-value=0.0017 Score=50.19 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=36.5
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccc-cCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++.. .++...||.. . +...|+.+| ..|++|+..+..
T Consensus 22 ~~~~~C~iC~~~~--~~~~~~pCgH-----~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN--IAIVFVPCGH-----LVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTCC-----BCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC--CCEEEcCCCC-----hhHHHHhhhcC------ccCCCcCcCccC
Confidence 3467899999764 3577889974 5 899999999 699999999875
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.38 E-value=0.0066 Score=45.83 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCeeeEecccCCCCCeecc--cccccCCccc-cCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKM--ECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~--PC~CkGslk~-VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
++..|.||++... +.... ||.. . +=.+|+.+|... +..|++|+..+..
T Consensus 7 ~~~~C~IC~~~~~--~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK--NGCIVHGKTGH-----LMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS--CEEEEETTEEE-----EEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC--CEEEECCCCCC-----hhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 4567999997643 45555 9973 3 358999999975 4589999998874
No 58
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.21 E-value=0.0089 Score=56.57 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=38.5
Q ss_pred CCCeeeEecccCCCCCeeccccc-ccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDICEEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.-..|-||++--..| .-|. |. ..+|..|+.+|++..++..|+.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 377899998765543 2232 54 37999999999998888899999998764
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.08 E-value=0.003 Score=46.26 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=35.5
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++..+||.. .++..|+.+| ...|++|+..+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~~l~CgH-----~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKLLPCLH-----TLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSCSTTSC-----CSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC--CeEEcCCCC-----cccHHHHccC-----CCCCCcCCcEeec
Confidence 55677999997654 467889863 6788998773 5689999998763
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.06 E-value=0.0022 Score=53.31 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=37.5
Q ss_pred CCCCeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
+++..|.||++... ++... ||. +.++..|+.+|+. ..|++|+..+.
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhh--CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45788999997654 46666 886 4789999999987 68999999975
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.95 E-value=0.015 Score=44.64 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=37.0
Q ss_pred ccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
|...+++..|.||++.. .+....||... .+-..|+.+ ...|++|+..+...
T Consensus 9 e~~~~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGT--VNWVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSC--CCCEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCC--CCEEEECCCCh----hhhHHHHhc------CCCCCCCCcchhce
Confidence 34445567899999753 35788999842 166789873 36999999998753
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.72 E-value=0.0048 Score=53.66 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=39.5
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceec
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~ 253 (411)
..+++-.|-||++... ++...+|. +.++..|+.+|+.. +...|++|+.++.
T Consensus 27 ~l~~~~~C~IC~~~~~--~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR--RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhc--CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 4456778999997654 46777876 47899999999964 4569999999753
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.05 E-value=0.024 Score=49.64 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=39.8
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.+++-.|-||++... ++...||. +.+...|+.+|+..++ ..|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc--CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 345678999997654 47777775 4789999999998754 499999998764
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.92 E-value=0.027 Score=51.48 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=40.7
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
..++-.|-||++... +|.+.||. +.+=+.|+.+|+...+. +|++|+.++..
T Consensus 103 ip~~f~CPI~~elm~--DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred CcHhhcccCccccCC--CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 346788999987654 58999985 46789999999987654 79999998763
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.89 E-value=0.007 Score=46.62 Aligned_cols=45 Identities=27% Similarity=0.606 Sum_probs=34.5
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccc-cCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++.. .++...||.. . +...|+.+ ...|++|+..+..
T Consensus 23 ~~~~~C~IC~~~~--~~~~~~pCgH-----~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRN--IAIVFVPCGH-----LVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSC--CCBCCSSSCC-----CCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCC--CCEEEecCCC-----HHHHHHHhhC------CCCCccCCceecC
Confidence 3456899999764 3577889973 5 78999864 2699999999875
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.54 E-value=0.051 Score=43.69 Aligned_cols=49 Identities=16% Similarity=0.433 Sum_probs=38.6
Q ss_pred cCCCCeeeEecccCCCCCeeccc-ccccCCccccCHHHHHHHHHhc----CCCccCC--Ccce
Q 015199 196 AEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTK----GNKNCEV--CGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~s----~~~~CEl--Ck~~ 251 (411)
..++-.|-||++... +|.+.| |. +.+-+.|+.+|+... +..+|++ |+..
T Consensus 4 ~~~~~~CPI~~~~~~--dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK--KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCS--SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhc--CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356788999997654 588886 86 367899999999864 3679999 9866
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.78 E-value=0.05 Score=43.33 Aligned_cols=51 Identities=20% Similarity=0.529 Sum_probs=37.5
Q ss_pred CCCCeeeEecccCCCCCeec-ccccccCCccccCHHHHHHHHHhc---C---CCccCC--Cccee
Q 015199 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTK---G---NKNCEV--CGKEV 252 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~s---~---~~~CEl--Ck~~y 252 (411)
++...|-||++.....+.+. .+|.+ .+..+|+.+++..+ + ...|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH-----~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQC-----IFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTE-----EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCCC-----cccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 34567999998755433333 47874 78999999999764 2 469999 99884
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.12 Score=50.09 Aligned_cols=51 Identities=18% Similarity=0.392 Sum_probs=40.1
Q ss_pred CCCCeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCC--Ccceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEV--CGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CEl--Ck~~y~~ 254 (411)
..+-.|-||++... +|... .|. +.+=+.|+.+|+...+...|++ |+..+..
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc--CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45678999987643 57764 776 3678899999998777789999 9998763
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=90.85 E-value=0.03 Score=55.66 Aligned_cols=45 Identities=29% Similarity=0.746 Sum_probs=36.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccc-cCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
+++..|.||++... ++...||.. . +...|+.+| ..|++|+..+..
T Consensus 293 ~~~~~C~IC~~~~~--~~v~lpCgH-----~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SVVFIPCGH-----LVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC--CEEEETTCC-----EEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC--ceEEcCCCC-----hhHhHHHHhcC------CcCCCCCCCccC
Confidence 45689999997643 577889984 5 788999988 599999999874
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.57 E-value=0.13 Score=39.83 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=37.1
Q ss_pred CccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcceec
Q 015199 192 DEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQ 253 (411)
Q Consensus 192 ~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y~ 253 (411)
+++.+..+..|.||.+. ++ ++ -| .+=-+.+|..||.-.+.. ++.+.|+.|...-.
T Consensus 5 ~~~~~~~~~~C~vC~~~---~~-ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 5 GQQNLAPGARCGVCGDG---TD-VL-RC--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTTCCCTTCCCTTTSCC---TT-CE-EC--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred cccCCCCCCCcCCCCCC---Ce-EE-EC--CCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 34555667789999753 33 33 23 233368999999877755 46899999987644
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=88.51 E-value=0.071 Score=41.83 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=35.2
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
+++..|.||++.. .++...||... .+=..|+.+| ..|++|+..+...
T Consensus 16 ~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEE--INSTFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCccc--CcEEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 3456899999753 35788999842 1557899877 3999999998863
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=85.49 E-value=0.39 Score=36.10 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=34.7
Q ss_pred CeeeEecccCCCCCeecc-cccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 200 ~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
-.|.||++..+ ++.+. +|. +.+=+.|+++|+...+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC--CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 46888876644 57777 554 3678999999998754 69999988764
No 73
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.08 E-value=0.55 Score=38.00 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=34.0
Q ss_pred cCCCCeeeEecccCC-CCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCccee
Q 015199 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (411)
Q Consensus 196 ~eee~~CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y 252 (411)
.+++..|.||...+. +++.|+ -|. +=-..+|..|+.-=..-.+.+.|+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 356688999987642 223333 333 223478999986433335789999997653
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.47 E-value=1.2 Score=36.55 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=35.0
Q ss_pred CCccccCCCCeeeEecccCCCCCeec--ccccccCCccccCHHHHHHHHHh--cCCCccCCCccee
Q 015199 191 NDEEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (411)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y 252 (411)
+.+.++++...| ||..... ++ ++ --|.|.. .++|..|+. +.. +++..|+.|...-
T Consensus 28 ~~~~d~~e~~yC-iC~~~~~-g~-MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVSY-GE-MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBCC-SC-CCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCcCCCCCcEE-ECCCCCC-CC-EeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 444455667778 9976543 33 43 2344652 589999987 333 3679999997643
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.30 E-value=3.9 Score=33.99 Aligned_cols=51 Identities=25% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCCeeeEecccC---CCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
...+|.||-+.- .+|+.++ ..|. --|=+.|.+-=.+ .++..|+.||++|.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 457999998652 3455554 3443 1367789875443 478999999999984
No 76
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=67.85 E-value=0.66 Score=36.21 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=34.6
Q ss_pred CCccccCCCCeeeEecccCCCCCeecc--cccccCCccccCHHHHHHHHHh--cCCCccCCCccee
Q 015199 191 NDEEIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (411)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y 252 (411)
+.+.++++...| ||..... ++ ++. -|.|.. .++|..|+. +.. .++..|+.|...-
T Consensus 8 ~~~~d~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQVSY-GE-MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCCTTSCCCS-TTCCCSC-SS-EECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccccCCCCCCEE-ECCCCCC-CC-EeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 444445667788 8976533 33 432 334642 589999987 433 3689999997643
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=65.13 E-value=0.8 Score=35.77 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=32.4
Q ss_pred CCCCeeeEecccC-CCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcce
Q 015199 197 EEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (411)
Q Consensus 197 eee~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~ 251 (411)
+++..|.||...+ ++++.++ -|. +=-..+|..|+.-=..-++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 2333333 232 22248899998632233578899998654
No 78
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.40 E-value=0.23 Score=40.10 Aligned_cols=56 Identities=21% Similarity=0.463 Sum_probs=36.4
Q ss_pred ccCCCCeeeEecccCCC-CCeecccccccCCccccCHHHHHHHHH------hcCCCccCCCcceec
Q 015199 195 IAEEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFS------TKGNKNCEVCGKEVQ 253 (411)
Q Consensus 195 ~~eee~~CRICl~~~ee-g~~Li~PC~CkGslk~VH~~CL~kWl~------~s~~~~CElCk~~y~ 253 (411)
..+++..|.+|.....+ ++.|+.==.|. +.+|+.|+.-=+. -.+.+.|..|....+
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred cCCCCCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34567899999876432 34444322243 4789999875443 247899999987655
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=63.34 E-value=0.61 Score=42.56 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=33.6
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y~ 253 (411)
++.+..|.+|... |+ ++ - |.+--+.+|..|+.--+.. ++.+.|+.|...-.
T Consensus 4 d~~~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---Cc-eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3456779999754 22 32 2 3333468999998665543 46899999986543
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=60.82 E-value=1.6 Score=32.83 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=31.8
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcce
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~ 251 (411)
.+++..|.+|... ++.+. | .+=-+.+|..|+.-=+.. ++.+.|+.|..+
T Consensus 8 ~~~~~~C~vC~~~---g~ll~--C--D~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIIL--C--DTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEE--C--SSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEE--C--CCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4556789999753 33222 2 233358999998764332 468999999753
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=60.27 E-value=1.3 Score=34.18 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=33.2
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcceec
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQ 253 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y~ 253 (411)
.++...|.||....+ ++.++. | .+=-.++|..|+.--... .+...|+.|.....
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~-C--D~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIG-C--DDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEE-C--SSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCC-CCCEEE-c--CCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455667999976543 333432 2 222369999998643322 25789999976543
No 82
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=56.99 E-value=1.6 Score=38.40 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=33.3
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh---cCCCccCCCccee
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---s~~~~CElCk~~y 252 (411)
++++..| +|....+++..++.=-.|. .++|..|+.---.. .+...|+.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 3567789 9987654444455433454 69999998532221 4578999998653
No 83
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=56.20 E-value=0.51 Score=35.55 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=29.4
Q ss_pred cccCCCCeeeEecccCCCCCeecc--cccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
.++++...| ||..... | .++. -|.|.. .++|..|+. +.. .++..|+.|..
T Consensus 5 ~d~~e~~~C-~C~~~~~-g-~mi~CD~cdC~~--~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEECC-S-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcCC-C-CEEEeCCCCCCC--ceEehhcCC--CCcCCCCCEECcCccC
Confidence 344566777 8976532 3 3442 344542 589999987 433 36788988864
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=54.78 E-value=0.62 Score=38.25 Aligned_cols=52 Identities=23% Similarity=0.509 Sum_probs=31.4
Q ss_pred CccccCCCCeeeEecccCCCCCeec--ccccccCCccccCHHHHHHHHHh--cCCCccCC-Ccc
Q 015199 192 DEEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEV-CGK 250 (411)
Q Consensus 192 ~ed~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~--s~~~~CEl-Ck~ 250 (411)
+++++++...| ||..... |+ ++ --|.|.. .++|..|+. |.. .+...|+. |..
T Consensus 19 ~~~~~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 19 EGNNNQEEVYC-FCRNVSY-GP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -----CCSCCS-TTTCCCS-SS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCCCCcEE-EeCCCCC-CC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34445667788 8976433 33 43 3466763 589999986 322 36799999 973
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.03 E-value=2.9 Score=29.82 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=28.0
Q ss_pred CeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
+.|.||...+++++ ++ -|. +=-+.+|..|+.-=+.. ++.+.|+.|..
T Consensus 1 a~C~vC~~~~~~~~-ll-~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDK-LI-LCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSC-CE-ECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCC-EE-ECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 35889987654433 22 222 22358899998531222 35788999864
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=50.78 E-value=10 Score=32.93 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=31.8
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHH------HH---hcCCCccCCCcc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRW------FS---TKGNKNCEVCGK 250 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kW------l~---~s~~~~CElCk~ 250 (411)
+..+..|++|.+. ..|+ - |.+--+.+|.+|+.+= -+ ..+.+.|..|..
T Consensus 54 Dg~~~~C~vC~dG----G~Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3455679999753 2333 2 2344478999999974 23 257899999954
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.24 E-value=7 Score=30.43 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.1
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh---cCCCccCCCccee
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---s~~~~CElCk~~y 252 (411)
+++...| ||....+++..++.=-.|. .++|..|+.-=-.. -....|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456677 8876654344455422454 69999998532222 2578999998764
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=38.42 E-value=14 Score=32.48 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHH---------hcCCCccCCCcc
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS---------TKGNKNCEVCGK 250 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~---------~s~~~~CElCk~ 250 (411)
..+..|++|.+. |+ |+ -| .+=-+.+|..||..=+. ..+.+.|..|..
T Consensus 61 g~~d~C~vC~~G---G~-Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 446789999754 33 33 22 23345899999996542 357899999974
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.49 E-value=4.3 Score=33.32 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.1
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHH
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~ 238 (411)
.++++.|.||.+.++.+ .|+ -| .+=-+.+|..||.-.+.
T Consensus 4 ~~~~~~C~~C~~~g~~~-~ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLL-DQF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTT-TSE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCc-CCe-EC--CCCCCCcChHHhCCccc
Confidence 45678899998765432 232 33 23336899999987654
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=37.08 E-value=2.9 Score=37.17 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=32.3
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCccee
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~y 252 (411)
+++..|.+|..+ |+ + .-| .+--+.+|..|+.--+.. ++.+.|+.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~-l-l~C--d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GE-L-LCC--EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SS-C-EEC--SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---Ce-e-eec--CCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 356779999754 33 2 233 333358999998665543 4679999998653
No 91
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.94 E-value=4.9 Score=33.78 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=27.7
Q ss_pred ccccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCC
Q 015199 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEV 247 (411)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CEl 247 (411)
+...+++..|.+|.+. | . ..-|..++--+.+|..||. +.. ++++.|+-
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~ 58 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPW 58 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGG
T ss_pred CCcCCCCCCCCcCCCC---C-c-EeEECCCCCCcccccccCc--CCcCCCCCEECCC
Confidence 3344667789999742 2 2 3456522223589999997 433 34555553
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.91 E-value=1.7 Score=35.30 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=32.0
Q ss_pred cccCCCCeeeEecccCCCCCeecccc-cccCCccccCHHHHHHHHH--hcCCCccCCCcce
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC-~CkGslk~VH~~CL~kWl~--~s~~~~CElCk~~ 251 (411)
....+...|.||....+++ .+ .-| .|. +.+|..||.-=+. -++.+.|+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~-~l-l~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDD-KL-LFCDGCD---DNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGG-GC-EECTTTC---CEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCC-CE-EEcCCCC---chhccccCCCCcccCCCCCcCCccCcCc
Confidence 3344567899998765432 22 233 243 4899999852111 2467899999764
No 93
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=32.09 E-value=65 Score=35.91 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhhhhhh
Q 015199 342 REYIWTYAALEFALVAVAVHL--LYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTWRVRV 403 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~i--fy~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~wr~~~ 403 (411)
..|+|.-.++.+++.+++.|+ +..+++..++-.....-..++++.+ .++.|..+|-.|+
T Consensus 962 N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~---~~~~e~~K~~~r~ 1022 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLI---FVYDEIRKLGVRC 1022 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 456777677777777776665 4567777666554444445555443 4677888875443
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.70 E-value=16 Score=27.83 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=20.8
Q ss_pred ccCCCCeeeEecccCCCCCeecccc--cccCCccccCHHHH
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMEC--SCKGALRLVHEECA 233 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC--~CkGslk~VH~~CL 233 (411)
.++....|-+|.....++..++ -| .|+ .++|..|+
T Consensus 4 ~~~~~~~C~~C~~p~~~~~~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVNDDQDAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp -----CBCTTTCSBCCTTSCEE-EBTTTTC---CEEEHHHH
T ss_pred CCCCcCcCccCCCccCCCCCeE-ecccCcc---ccCchhcc
Confidence 3566778999998765444333 44 354 59999996
No 95
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.20 E-value=1.4 Score=33.48 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=29.0
Q ss_pred cccCCCCeeeEecccCCCCCeecc--cccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 194 EIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
.++++...| ||..... | .++. -|.|+ ..++|..|+. +.. .+...|+.|..
T Consensus 6 ~d~~e~~yC-~C~~~~~-g-~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 6 IDPNEPTYC-LCNQVSY-G-EMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ----CCEET-TTTEECC-S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cCCCCCcEE-ECCCCCC-C-CeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 344566777 8876532 3 3442 34465 2599999987 332 35788888864
No 96
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=30.91 E-value=14 Score=31.07 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhcCCCccCCCcceecc
Q 015199 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (411)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~ 254 (411)
.-.|..|+.+.. .|+ .|+ -+|.=..||..-++.++ .|+||+++...
T Consensus 28 ~~nCKsCWf~~k---~LV-~C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFENK---GLV-ECN----NHYLCLNCLTLLLSVSN--RCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCCS---SEE-ECS----SCEEEHHHHHHTCSSSS--EETTTTEECCC
T ss_pred cccChhhccccC---Cee-eec----chhhHHHHHHHHHhhcc--CCcccCCcCCc
Confidence 356888886432 355 333 26888899988776654 99999999864
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.59 E-value=3.6 Score=30.84 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=30.3
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcce
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~ 251 (411)
++++..|.+|.+. ++ |+ -| .+=-+.+|..|+.-=+.. ++.+.|+.|...
T Consensus 6 d~~~~~C~vC~~~---g~-ll-~C--d~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LL-CC--DTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CB-CC--SSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CC-EE-Ec--CCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457789999753 22 22 22 222347899998743322 367899999754
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.24 E-value=9.3 Score=28.42 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=32.4
Q ss_pred cCCCCeeeEecccCC-CCCeecccccccCCccccCHHHHHHHHH-----hcCCCccCCCcce
Q 015199 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFS-----TKGNKNCEVCGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~-----~s~~~~CElCk~~ 251 (411)
++++..|.+|..... +++.|+ -|. +=-+.+|..|+.-=+. -.+.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-ICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-ECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 566788999986532 223333 222 2234789999864321 3567888888653
No 99
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=5.5 Score=30.85 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=30.8
Q ss_pred cCCCCeeeEecccCCCCCeec--ccccccCCccccCHHHHHHHHHhcCCCccCCCccee
Q 015199 196 AEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y 252 (411)
+++...| ||.... .| .++ .-|.|.. .++|..|+.-=-...+...|+.|....
T Consensus 3 ~~~~~yC-~C~~~~-~g-~MI~CD~cdC~~--~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVS-YG-EMVGCDNQDCPI--EWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCC-CS-SEECCSCTTCSC--CCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCC-CC-CEeEeCCCCCCc--cCCcccccccCcCCCCCEECCCCCccc
Confidence 4556667 476543 33 343 3455643 599999986211113578899997654
No 100
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=28.96 E-value=1.3e+02 Score=32.40 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015199 342 REYIWTYAALEFALVAVAVHLLYTIL 367 (411)
Q Consensus 342 r~yiW~yA~~qf~lv~l~~~ify~~l 367 (411)
....|...++-+++++...|++|++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~y~~wr~~ 86 (802)
T 4hg6_A 61 DKMVPRFLLLSAASMLVMRYWFWRLF 86 (802)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777778888888899999876
No 101
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.68 E-value=6 Score=41.04 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHhc---CCCccCCCccee
Q 015199 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEV 252 (411)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~s---~~~~CElCk~~y 252 (411)
.+...| ||....+.+..++.=..|. .++|..|+.-=-... +...|+.|....
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 444555 7766544344566544565 599999984321111 358999998654
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.64 E-value=40 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=30.9
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHH-------hcCCCccCCCcce
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-------TKGNKNCEVCGKE 251 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~-------~s~~~~CElCk~~ 251 (411)
.+++...| ||..... +..++.==.|. .++|..|+.-=.. ......|+.|...
T Consensus 12 ~d~~~~~C-~C~~~~~-~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 12 YDPNALYC-ICRQPHN-NRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCTTCCCS-TTCCCCC-SSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cCCCCCEE-ECCCccC-CCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 33445777 7876544 33444322454 6999999842111 2357899999754
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.23 E-value=11 Score=31.24 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=33.1
Q ss_pred CeeeEecccCCCCCeecccc-cccCCccccCHHHHHH----HHH----hcCCCccCCCcceec
Q 015199 200 AVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIR----WFS----TKGNKNCEVCGKEVQ 253 (411)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC-~CkGslk~VH~~CL~k----Wl~----~s~~~~CElCk~~y~ 253 (411)
..|.||.....++..++.=| .|+ .++|..|+.- .-. ..+...|+.|...-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46999987754444455555 686 5999999731 111 114689999987543
No 104
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.51 E-value=15 Score=27.12 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=32.3
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh---cCCCccCCCcce
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---s~~~~CElCk~~ 251 (411)
++++..|.||....+++..++.==.|. .++|..|+.--... -....|+.|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCE---MWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSC---CEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCC---CCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 466788999987654444454311343 69999997532221 145778888653
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.26 E-value=29 Score=28.52 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=21.0
Q ss_pred CCCeeeEecccCC-----CCCeecccccccCCccccCHHHHHH
Q 015199 198 EEAVCRICLDICE-----EGNTLKMECSCKGALRLVHEECAIR 235 (411)
Q Consensus 198 ee~~CRICl~~~e-----eg~~Li~PC~CkGslk~VH~~CL~k 235 (411)
...+|.+|+...+ +++.|+. | .+=-+.+|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~-C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS-C--ADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE-C--TTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE-h--hhcCCCCCCchhcC
Confidence 4578999986532 2234442 2 22235789999953
No 106
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.15 E-value=3.1 Score=30.45 Aligned_cols=49 Identities=29% Similarity=0.538 Sum_probs=29.0
Q ss_pred ccCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
.++++..|.+|... ++ |+ -|. +=-+.+|..|+..=+.. ++.+.|+.|..
T Consensus 5 ~~~~~~~C~vC~~~---g~-ll-~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQ-LL-MCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SC-CE-ECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---Ce-EE-EcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567789999763 22 22 232 33358899998643222 35677877753
No 107
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=24.88 E-value=79 Score=20.93 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 015199 325 AFTLGILSSIFAVILAIREYIWT 347 (411)
Q Consensus 325 s~vlgllssi~~~~~~~r~yiW~ 347 (411)
.-|.++++|.+++.++.|..-|+
T Consensus 5 ~~VtaiLssLTvTsLlr~lh~wi 27 (28)
T 2kdr_X 5 ARVTAILSSLTVTQLLRRLHQWI 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778899999999999988886
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.82 E-value=11 Score=30.65 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHH-hcCCCccCCCcce
Q 015199 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-TKGNKNCEVCGKE 251 (411)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~-~s~~~~CElCk~~ 251 (411)
+...| ||....+++ .++.==.| -.++|..|+.-=.. ..+...|+.|+..
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C---~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKC---SVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTT---CBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCC---CCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34557 786554433 44432234 35999999742111 1236899999743
No 109
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=24.26 E-value=43 Score=28.12 Aligned_cols=34 Identities=29% Similarity=0.620 Sum_probs=27.4
Q ss_pred cccccccCCccccCHHHHHHHHHhcCCCccCCCcceeccc
Q 015199 216 KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (411)
Q Consensus 216 i~PC~CkGslk~VH~~CL~kWl~~s~~~~CElCk~~y~~~ 255 (411)
..||+ +.+=.+|+..|-+. +.++|+.|+.+++.+
T Consensus 17 mIPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRI 50 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEE
T ss_pred ecccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeee
Confidence 56888 36778999999765 357999999999865
No 110
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.36 E-value=2.3 Score=31.89 Aligned_cols=48 Identities=25% Similarity=0.537 Sum_probs=28.9
Q ss_pred cCCCCeeeEecccCCCCCeec--ccccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 196 AEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
+++...| ||..... | .++ --|.|.. .++|..|+. +.. +++..|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~-g-~mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-G-EMIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-C-CeeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 3456677 8876532 3 344 2344642 489999987 433 25788888864
No 111
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=23.18 E-value=2.6e+02 Score=26.18 Aligned_cols=37 Identities=3% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHhhcchhHHHHHHHhhhccceeeehhHHHHHhhhh
Q 015199 363 LYTILHLKAIYAILLSSLLGFGAAMSLNSLYIQYFTW 399 (411)
Q Consensus 363 fy~~l~~~~v~ai~la~~~gfgi~~~~~~~~~~~~~w 399 (411)
....++++.---+..+++.|++||...-.++-.++.+
T Consensus 84 ~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~G 120 (285)
T 3udc_A 84 ILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISG 120 (285)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677644444455667777777766666555543
No 112
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.10 E-value=63 Score=24.93 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCccccCCCCeeeEecccCCCCCeeccccc---ccCCccccCHHHHHHHHHh-------cCCCccCCCcce
Q 015199 190 NNDEEIAEEEAVCRICLDICEEGNTLKMECS---CKGALRLVHEECAIRWFST-------KGNKNCEVCGKE 251 (411)
Q Consensus 190 ~~~ed~~eee~~CRICl~~~eeg~~Li~PC~---CkGslk~VH~~CL~kWl~~-------s~~~~CElCk~~ 251 (411)
.+++..+++...| ||....+.+ .++ -|. |.- ++|..|+.-=-.. .....|+.|+..
T Consensus 7 ~dd~~~~~~~~~C-iC~~~~~~g-~MI-~CD~~~C~~---W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 7 GEDPFQPEIKVRC-VCGNSLETD-SMI-QCEDPRCHV---WQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCSSSCCCCCCC-SSCCCCCCS-CEE-ECSSTTTCC---EEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cccccCCCCCEEe-ECCCcCCCC-CEE-EECCccCCc---cccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3444555677888 897664333 333 343 553 9999997421111 136788888754
No 113
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.61 E-value=5.7 Score=30.06 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=30.1
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcc
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~ 250 (411)
++++..|.||.+. ++ |+ -| .+=-+.+|..|+..=+.. ++.+.|+.|..
T Consensus 5 ~~~~~~C~vC~~~---g~-ll-~C--D~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LI-CC--DGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CE-EC--SSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---CC-EE-Ec--CCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4567889999864 23 22 22 233358899998743322 36788999964
No 114
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=20.29 E-value=2.1e+02 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHhhhccceeeehhHHHHHhhhhhh
Q 015199 377 LSSLLGFGAAMSLNSLYIQYFTWRV 401 (411)
Q Consensus 377 la~~~gfgi~~~~~~~~~~~~~wr~ 401 (411)
.+-+.++|+++-.+-+++|.++-..
T Consensus 329 ~glil~iGi~VD~~I~i~eri~e~~ 353 (741)
T 3aqp_A 329 AGLVLTLGAAVDGNVLSFERIKEEL 353 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHH
Confidence 3445667777777777888766543
No 115
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.15 E-value=15 Score=29.95 Aligned_cols=49 Identities=20% Similarity=0.542 Sum_probs=31.8
Q ss_pred cCCCCeeeEecccCCCCCeecccccccCCccccCHHHHHHHHHh--cCCCccCCCcce
Q 015199 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (411)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--s~~~~CElCk~~ 251 (411)
.+++..|.+|... |+ |+ - |.+=-+.+|..|+.-=+.. ++.+.|..|...
T Consensus 22 d~n~~~C~vC~~~---g~-LL-~--CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LV-M--CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CE-E--CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EE-E--CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3556789999854 23 22 2 3344568999998543322 468999999854
Done!