Query 015200
Match_columns 411
No_of_seqs 365 out of 1552
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 4.6E-35 1E-39 315.2 11.6 247 97-355 216-538 (640)
2 cd05496 Bromo_WDR9_II Bromodom 100.0 1.8E-28 3.9E-33 211.7 11.4 107 102-213 4-111 (119)
3 cd05497 Bromo_Brdt_I_like Brom 100.0 4.8E-28 1E-32 205.5 11.6 102 103-207 5-106 (107)
4 cd05495 Bromo_cbp_like Bromodo 100.0 6.4E-28 1.4E-32 205.1 11.8 105 102-209 2-107 (108)
5 cd05505 Bromo_WSTF_like Bromod 99.9 1.5E-27 3.3E-32 199.1 10.1 95 105-204 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 4.1E-27 8.9E-32 196.4 10.0 96 105-205 2-97 (97)
7 cd05506 Bromo_plant1 Bromodoma 99.9 4.4E-27 9.5E-32 196.5 10.0 99 104-205 1-99 (99)
8 cd05504 Bromo_Acf1_like Bromod 99.9 6.4E-27 1.4E-31 201.1 10.8 104 100-208 9-112 (115)
9 cd05502 Bromo_tif1_like Bromod 99.9 1.4E-26 3E-31 197.1 12.0 102 103-210 4-108 (109)
10 cd05507 Bromo_brd8_like Bromod 99.9 1.9E-26 4E-31 194.8 11.1 100 103-207 3-102 (104)
11 cd05498 Bromo_Brdt_II_like Bro 99.9 2.4E-26 5.1E-31 193.2 10.4 98 105-205 2-102 (102)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 3E-26 6.5E-31 192.7 10.2 98 105-205 2-102 (102)
13 cd05508 Bromo_RACK7 Bromodomai 99.9 3.2E-26 7E-31 191.7 10.3 97 102-204 2-98 (99)
14 cd05501 Bromo_SP100C_like Brom 99.9 6.1E-26 1.3E-30 190.5 11.6 98 105-210 4-101 (102)
15 cd05500 Bromo_BDF1_2_I Bromodo 99.9 5E-26 1.1E-30 191.8 10.9 99 103-204 4-102 (103)
16 cd05510 Bromo_SPT7_like Bromod 99.9 6E-26 1.3E-30 194.1 11.3 102 102-208 6-109 (112)
17 cd05509 Bromo_gcn5_like Bromod 99.9 7.4E-26 1.6E-30 189.9 10.8 99 104-207 2-100 (101)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.3E-25 2.9E-30 190.6 9.8 100 103-207 1-106 (107)
19 cd05528 Bromo_AAA Bromodomain; 99.9 2.4E-25 5.2E-30 190.5 11.4 104 103-211 3-110 (112)
20 cd05513 Bromo_brd7_like Bromod 99.9 4.3E-25 9.2E-30 184.6 10.0 92 104-200 2-93 (98)
21 cd05512 Bromo_brd1_like Bromod 99.9 9.6E-25 2.1E-29 182.5 10.0 91 105-200 3-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 1.1E-24 2.3E-29 186.5 10.4 100 107-211 4-103 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 1.9E-24 4E-29 182.3 9.2 96 105-205 2-103 (103)
24 cd05524 Bromo_polybromo_I Brom 99.9 5.1E-24 1.1E-28 182.6 9.8 102 104-210 3-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 5.2E-24 1.1E-28 180.2 9.4 95 106-205 3-103 (105)
26 cd05520 Bromo_polybromo_III Br 99.9 1.3E-23 2.7E-28 177.3 9.2 81 119-204 22-102 (103)
27 smart00297 BROMO bromo domain. 99.9 3.3E-23 7E-28 174.3 11.1 101 102-207 6-106 (107)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 3.9E-23 8.4E-28 180.8 11.6 99 103-206 24-126 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 2.7E-23 5.8E-28 176.2 10.0 96 104-204 3-104 (106)
30 cd05518 Bromo_polybromo_IV Bro 99.9 1.9E-23 4.1E-28 176.2 8.8 84 116-204 19-102 (103)
31 cd05517 Bromo_polybromo_II Bro 99.9 2.1E-23 4.6E-28 175.9 8.7 93 106-203 3-101 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 8E-22 1.7E-26 166.6 10.2 82 118-204 22-103 (104)
33 cd04369 Bromodomain Bromodomai 99.9 1E-21 2.2E-26 160.6 9.0 95 106-205 3-99 (99)
34 PF00439 Bromodomain: Bromodom 99.9 8.3E-22 1.8E-26 158.7 7.9 84 108-196 1-84 (84)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.8E-21 6E-26 163.8 9.9 95 104-205 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.5E-20 3.2E-25 159.9 10.8 97 108-207 5-105 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 4.1E-18 8.9E-23 144.8 9.1 98 104-208 4-107 (110)
38 KOG1245 Chromatin remodeling c 99.7 2E-18 4.4E-23 197.6 7.3 97 108-210 1306-1402(1404)
39 COG5076 Transcription factor i 99.7 4.5E-17 9.8E-22 166.0 9.6 90 119-213 164-253 (371)
40 KOG1472 Histone acetyltransfer 99.6 9.2E-16 2E-20 164.4 7.0 143 63-210 562-708 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.9E-13 4.1E-18 117.4 4.8 84 103-186 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 4.6E-11 9.9E-16 133.5 11.2 176 3-209 488-666 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.0 4.3E-10 9.3E-15 96.5 3.4 41 144-187 63-103 (119)
44 KOG0008 Transcription initiati 99.0 6.7E-10 1.5E-14 124.2 5.9 94 107-205 1386-1479(1563)
45 KOG0386 Chromatin remodeling c 98.8 4.7E-09 1E-13 115.3 7.1 100 106-210 1027-1132(1157)
46 KOG1827 Chromatin remodeling c 98.7 1.4E-08 3E-13 108.3 6.6 97 104-205 53-155 (629)
47 KOG0008 Transcription initiati 98.7 1.4E-08 3E-13 114.0 6.6 101 101-206 1259-1359(1563)
48 KOG1472 Histone acetyltransfer 98.7 1.3E-08 2.8E-13 110.0 4.4 81 117-202 300-380 (720)
49 KOG1474 Transcription initiati 98.6 1.4E-08 3.1E-13 110.5 1.5 91 115-208 4-94 (640)
50 KOG1828 IRF-2-binding protein 98.0 1.4E-06 3.1E-11 87.6 0.3 88 110-202 26-113 (418)
51 KOG1828 IRF-2-binding protein 97.8 1.2E-05 2.6E-10 81.1 2.9 82 112-199 217-298 (418)
52 COG5076 Transcription factor i 96.9 0.00031 6.6E-09 72.1 0.6 87 115-206 275-361 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.0 0.0069 1.5E-07 53.3 3.9 68 145-215 59-126 (131)
54 KOG0644 Uncharacterized conser 87.5 0.45 9.8E-06 53.0 3.2 60 142-204 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 86.6 0.47 1E-05 54.6 2.8 65 120-187 532-601 (1080)
56 PF14372 DUF4413: Domain of un 71.9 11 0.00023 31.6 5.6 49 160-208 3-51 (101)
57 KOG1827 Chromatin remodeling c 62.7 0.95 2.1E-05 49.4 -3.1 76 121-201 213-288 (629)
58 KOG0644 Uncharacterized conser 54.0 7.2 0.00016 44.0 1.7 75 125-204 87-193 (1113)
59 PF03670 UPF0184: Uncharacteri 53.5 35 0.00075 27.9 5.1 49 4-52 1-54 (83)
60 PHA01750 hypothetical protein 42.7 52 0.0011 25.8 4.3 29 24-52 42-70 (75)
61 PF04728 LPP: Lipoprotein leuc 33.8 74 0.0016 24.1 3.9 29 24-52 3-31 (56)
62 PF11116 DUF2624: Protein of u 28.2 1.3E+02 0.0027 24.8 4.7 41 265-305 10-51 (85)
63 PF04508 Pox_A_type_inc: Viral 28.1 85 0.0019 19.5 2.8 20 32-51 2-21 (23)
64 PF10393 Matrilin_ccoil: Trime 25.2 1.2E+02 0.0027 22.0 3.7 24 24-47 23-46 (47)
65 PRK15396 murein lipoprotein; P 24.1 1.4E+02 0.0031 24.0 4.3 29 24-52 25-53 (78)
66 PF14933 CEP19: CEP19-like pro 22.5 2.3E+02 0.0051 25.8 5.9 35 311-361 106-140 (159)
67 PF11458 Mistic: Membrane-inte 21.6 94 0.002 25.0 2.7 29 270-299 3-31 (84)
68 PF03874 RNA_pol_Rpb4: RNA pol 20.8 96 0.0021 26.1 2.9 35 266-300 81-116 (117)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=4.6e-35 Score=315.21 Aligned_cols=247 Identities=32% Similarity=0.503 Sum_probs=185.3
Q ss_pred hhccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhch
Q 015200 97 AGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (411)
Q Consensus 97 ~~k~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LI 176 (411)
..+.+.+++++|..||..|+.|+++|||..|||+..||+||||+||++||||+||+.||.++. |.++.+|++|||||
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~---Y~~~~eF~~DVRL~ 292 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGE---YKSAEEFAADVRLT 292 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccc---cCCHHHHHHHHHHH
Confidence 556788999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCccchHHHhhhHHH----------------------HHH---Hhhhhh
Q 015200 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEEEKRQEEE----------------------EAK---AQLDMQ 231 (411)
Q Consensus 177 f~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~~~~~~~~~~e----------------------e~~---~~~~~~ 231 (411)
|.||++||++|++||.||+.|+.+|+.+|..+...+.........+ ... ......
T Consensus 293 F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (640)
T KOG1474|consen 293 FDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSE 372 (640)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccc
Confidence 9999999999999999999999999999999765443221100000 000 000000
Q ss_pred hhHHHhhhhHHHHHhhhHHHHHHhHH-----------------------H--------H----HHHHhhhcccCCHHHHH
Q 015200 232 LTQEAVQTNKAKELRSELNEVDMQLE-----------------------N--------L----RETVIQKCRKMSTEEKK 276 (411)
Q Consensus 232 ~~~~~~~~~~~~~l~~el~~~~~~le-----------------------~--------l----~~~~~~~~r~mT~eEK~ 276 (411)
.............+...+..+..++. . . ........+.||..|+.
T Consensus 373 ~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~ 452 (640)
T KOG1474|consen 373 LMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKA 452 (640)
T ss_pred cccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccc
Confidence 00000000000000000000000000 0 0 00112246789999999
Q ss_pred HHHHHhccC-ChHhHHHHHHHH--HhhCCCCCCCCCeEEEeccCCC-------------hHHHHHhccccccccccccch
Q 015200 277 NLGTALTRL-SPEDLCKALEIV--AENNPSFHATAQEVDLDMDAQV-------------HILCWIRLSSDIVCPFFHFLS 340 (411)
Q Consensus 277 ~L~~~I~~L-~~e~L~~Vi~II--~~~~P~~~~~~dEIElDId~L~-------------~~TL~~~L~~~~~~~~~~~~~ 340 (411)
.|...+..| ++..+..+++|+ ....+.+..+.+++++|++.++ ..|+| ++ +.|..
T Consensus 453 ~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~-~~--------~~~~~ 523 (640)
T KOG1474|consen 453 KLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIR-ET--------LKLST 523 (640)
T ss_pred cchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhh-cc--------ccchh
Confidence 999999995 999999999999 6677788889999999999999 99999 99 99999
Q ss_pred hhhHHHHHHHHhccc
Q 015200 341 SYSVFVQESLKAASR 355 (411)
Q Consensus 341 ~~~~yV~~~l~~~~~ 355 (411)
+|........+.+++
T Consensus 524 ~~~~~~s~~~~~~~~ 538 (640)
T KOG1474|consen 524 ERELELSKASSSRSL 538 (640)
T ss_pred hHHHHHHHHhhhhhh
Confidence 999888888776664
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.8e-28 Score=211.72 Aligned_cols=107 Identities=29% Similarity=0.489 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.++.+.|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||+
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~---Y~~~~ef~~D~~lif~Na~ 78 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGN---YDDPMEFAKDVRLIFSNSK 78 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCC-CCHHHHHHHHHHHHHHHHHHhhCccch
Q 015200 182 KYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKVM 213 (411)
Q Consensus 182 ~YN~~-~s~v~~~A~~L~~~Fe~~~~~~~~~~~ 213 (411)
+||++ +|.||.+|..|+..|+++|..+.+.+.
T Consensus 79 ~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 79 SYTPNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 999999999999999999999876553
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=4.8e-28 Score=205.50 Aligned_cols=102 Identities=36% Similarity=0.655 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
++.-.+..||..|++|+.|+||..|||+..+++||||++|++||||+||++||+++. |.++.+|.+||+|||.||+.
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY---YWSASECIQDFNTMFTNCYI 81 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 344456789999999999999999999987779999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
||+++|+|+.+|..|++.|++++.+
T Consensus 82 yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 82 YNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999865
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=6.4e-28 Score=205.11 Aligned_cols=105 Identities=31% Similarity=0.579 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 102 QELKRQFAAIFRQITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~-~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
.+|.+.|..++..|+++ +.||||..||++..+++||||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ---YQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 36788999999999999 99999999999987779999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
+.||+++|.++.+|..|++.|++.+..++
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.5e-27 Score=199.07 Aligned_cols=95 Identities=29% Similarity=0.527 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcC
Q 015200 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (411)
Q Consensus 105 ~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN 184 (411)
.++|..||+.|++++.++||..||++.. +||||++|++||||+||++||+++. |.|+++|.+||+|||.||++||
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGS---YSSVQEFLDDMKLVFSNAEKYY 76 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 3689999999999999999999999887 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 015200 185 DERDDVHVMAKSLLEKFEEK 204 (411)
Q Consensus 185 ~~~s~v~~~A~~L~~~Fe~~ 204 (411)
+++|.|+.+|..|++.|.++
T Consensus 77 ~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 77 ENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.1e-27 Score=196.40 Aligned_cols=96 Identities=34% Similarity=0.720 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcC
Q 015200 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (411)
Q Consensus 105 ~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN 184 (411)
+..|..||..|++|+.+++|+.||++.. +|+||++|++||||+||++||+++. |.|+++|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQ---YKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999987 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 015200 185 DERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 185 ~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
+++|.++.+|..|++.|+++|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 7
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.4e-27 Score=196.53 Aligned_cols=99 Identities=48% Similarity=0.944 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhc
Q 015200 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 104 l~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~Y 183 (411)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++. |.++.+|..||+|||.||++|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~---Y~s~~ef~~D~~li~~Na~~y 77 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE---YSSPEEFAADVRLTFANAMRY 77 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999886679999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 015200 184 NDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
|+++|.++.+|..|++.|+++|
T Consensus 78 n~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 78 NPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.4e-27 Score=201.06 Aligned_cols=104 Identities=33% Similarity=0.581 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
.+......|..||..|++++.++||..||+... +||||++|++||||+||++||..+. |.|+.+|.+||+|||.|
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~---Y~s~~~f~~Dv~LI~~N 83 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGE---YKLAEEFLSDIQLVFSN 83 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 455677899999999999999999999999877 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
|++||+++|.++.+|..|+..|+++++++
T Consensus 84 a~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 84 CFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 9
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=197.12 Aligned_cols=102 Identities=36% Similarity=0.629 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCC---CCCCCCCHHHHHHHHhchhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGK---DGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~---~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
...+.|..||..|++|+.|+||..||++ . +|+||++|++||||+||++||+.+ . |.++++|.+||+|||.|
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~---Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQH---YSSPEEFVADVRLMFKN 77 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999999998 4 999999999999999999999984 6 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|..||+++|.++.+|..|+..|+++|..++|
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999987
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.9e-26 Score=194.85 Aligned_cols=100 Identities=31% Similarity=0.520 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
.|.+.|..|+..|++|+.|+||..||+... +||||++|++||||+||++||+++. |.++++|.+||+|||.||..
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 77 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGT---IRSTAEFQRDVLLMFQNAIM 77 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999876 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
||+++|.|+.+|..|+..|...+..
T Consensus 78 yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 78 YNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999887754
No 11
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.4e-26 Score=193.22 Aligned_cols=98 Identities=46% Similarity=0.901 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 105 KRQFAAIFRQITQH---KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 105 ~~~c~~il~~l~~~---~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
++.|..||..|+++ +.++||..||++...++||||++|++||||+||++||.++. |.|+.+|..||+|||.||+
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE---YADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHH
Confidence 46899999999999 89999999999987679999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3e-26 Score=192.71 Aligned_cols=98 Identities=36% Similarity=0.773 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 105 KRQFAAIFRQITQH---KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 105 ~~~c~~il~~l~~~---~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
++.|..||..|+++ +.++||+.||++...++||||++|++||||+||++||+++. |.++.+|.+||+|||.||+
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~---Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQ---YQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHH
Confidence 46899999999994 57999999999985559999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 13
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.2e-26 Score=191.68 Aligned_cols=97 Identities=28% Similarity=0.511 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.++...+..++..|. |+.||||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~Na~ 75 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKA---YGSTDAFLADAKWILHNAI 75 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 356667888999998 999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEK 204 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~ 204 (411)
.||+++|.++.+|..|.+.|+..
T Consensus 76 ~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 76 IYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.1e-26 Score=190.49 Aligned_cols=98 Identities=19% Similarity=0.347 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcC
Q 015200 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (411)
Q Consensus 105 ~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN 184 (411)
++.|..||..|++++.|++|..++ .. +||||++|++||||+||++||.++. |.|+++|.+||+|||.||++||
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~p--~~--~pdY~~iIk~PMDL~tI~~kL~~~~---Y~s~~ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISKP--YY--IRDYCQGIKEPMWLNKVKERLNERV---YHTVEGFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCCC--CC--CCchHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHc
Confidence 467999999999999999997743 33 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 185 DERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 185 ~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
+++ .++.+|..|++.|+++|..++.
T Consensus 77 ~~~-~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 77 KDD-DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 999 9999999999999999988753
No 15
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5e-26 Score=191.78 Aligned_cols=99 Identities=32% Similarity=0.526 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
+..+.|..|+..|++++.++||..||++...++||||++|++||||+||++||.++. |.++.+|..||+|||.||+.
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV---YTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999987779999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 015200 183 YNDERDDVHVMAKSLLEKFEEK 204 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~ 204 (411)
||+++|.++.+|..|+..|++.
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 16
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6e-26 Score=194.13 Aligned_cols=102 Identities=25% Similarity=0.478 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 102 QELKRQFAAIFRQITQH-KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~-~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
.++...|..|+..|++| +.|+||..||++.. +||||++|++||||+||++||.++. |.|+++|.+||+|||.||
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~Li~~N~ 80 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQ---YKSKAEFVDDLNLIWKNC 80 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHH
Confidence 47888999999999999 89999999999987 9999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCC-HHHHHHHHHHHHHHHHHHhh
Q 015200 181 MKYNDERD-DVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 181 ~~YN~~~s-~v~~~A~~L~~~Fe~~~~~~ 208 (411)
+.||+++| .++.+|..|++.|+..+..+
T Consensus 81 ~~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 81 LLYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99999866 67899999999999998766
No 17
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.4e-26 Score=189.86 Aligned_cols=99 Identities=37% Similarity=0.646 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhc
Q 015200 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 104 l~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~Y 183 (411)
++.+|..|+..|++|+.+++|..||++.. +|+||++|++||||+||++||.++. |.|+.+|..||+|||.||+.|
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~Na~~y 76 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGY---YVTLEEFVADLKLIFDNCRLY 76 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 184 NDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
|+++|.++.+|..|+..|++.+.+
T Consensus 77 N~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 77 NGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998765
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-25 Score=190.60 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhch
Q 015200 103 ELKRQFAAIFRQITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~------a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LI 176 (411)
+|.++|..||..|.++.. ++||..||+... +||||++|++||||+||++||.++. |.++.+|..||.||
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li 75 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLEDLEKDVMLL 75 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHHH
Confidence 366789999999998865 899999999887 9999999999999999999999999 99999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 177 f~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
|.||+.||+++|.||.+|..|+..|++.+.+
T Consensus 76 ~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 76 CQNAQTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998865
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.92 E-value=2.4e-25 Score=190.46 Aligned_cols=104 Identities=29% Similarity=0.503 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
++...|..|+..|+.|+.++||..||++.. +||||++|++||||+||++||+++. |.|+.+|.+||+|||.||+.
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~~ 77 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQ---YLTAKDFLKDIDLIVTNALE 77 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCC---cCCHHHHHHHHHHHHHHHHH
Confidence 566688999999999999999999999998 9999999999999999999999999 99999999999999999999
Q ss_pred cCCC----CCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 183 YNDE----RDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 183 YN~~----~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
||++ ||.++.+|..|++.|.+++.+.+|.
T Consensus 78 yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 78 YNPDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 4799999999999999999888764
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.3e-25 Score=184.60 Aligned_cols=92 Identities=34% Similarity=0.499 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhc
Q 015200 104 LKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 104 l~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~Y 183 (411)
+...|..|++.|+.++.+++|..||+... +||||++|++||||+||++||+++. |.++++|.+||+|||.||++|
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~y 76 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNND---YQSIEEFKDDFKLMCENAMKY 76 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999877 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 015200 184 NDERDDVHVMAKSLLEK 200 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~ 200 (411)
|+++|.+|.+|..|...
T Consensus 77 N~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 77 NKPDTIYYKAAKKLLHS 93 (98)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998654
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.6e-25 Score=182.53 Aligned_cols=91 Identities=29% Similarity=0.505 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcC
Q 015200 105 KRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (411)
Q Consensus 105 ~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN 184 (411)
...|..+|.+|+.|+.+++|..||+... +||||++|++||||+||++||.++. |.++++|..||+|||.||+.||
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQR---YRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 3468899999999999999999999987 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 015200 185 DERDDVHVMAKSLLEK 200 (411)
Q Consensus 185 ~~~s~v~~~A~~L~~~ 200 (411)
+++|.+|.+|..|++.
T Consensus 78 ~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 78 AKDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=186.46 Aligned_cols=100 Identities=30% Similarity=0.540 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCC
Q 015200 107 QFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 186 (411)
Q Consensus 107 ~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 186 (411)
.+..|+..|++++.++||..||++.. +|+||++|++||||+||++||.++. |.++++|.+||+|||.||..||++
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~---Y~s~~ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHK---YQSREEFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999987 9999999999999999999999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 187 RDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 187 ~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
+|.++.+|..|...|+..+..+...
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999998777443
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.9e-24 Score=182.25 Aligned_cols=96 Identities=27% Similarity=0.511 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHc------CCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhh
Q 015200 105 KRQFAAIFRQITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 105 ~~~c~~il~~l~~------~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~ 178 (411)
.+.|..|++.|+. ++.+++|..||+... +||||++|++||||+||++||..+. |.|+.+|..||+|||.
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~---Y~s~~~f~~D~~li~~ 76 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRA---YKSLEEFLEDFHLMFA 76 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHH
Confidence 4678888888884 457999999999888 9999999999999999999999999 9999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 179 NAMKYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 179 Na~~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
||+.||+++|.++.+|..|++.|+++|
T Consensus 77 Na~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 77 NARTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998864
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=5.1e-24 Score=182.56 Aligned_cols=102 Identities=24% Similarity=0.364 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 104 LKRQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 104 l~~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
..+.|..|++.|+++ +.+.+|.++|+... +||||++|++||||+||++||.++. |.|+.+|.+||+|||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~lm~ 77 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEE---YDDVDDLTADFELLI 77 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCC---CCCHHHHHHHHHHHH
Confidence 457899999999974 45678999999877 9999999999999999999999999 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
.||+.||+++|.+|.+|..|++.|++.+..+.+
T Consensus 78 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 78 NNAKAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999877643
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=5.2e-24 Score=180.20 Aligned_cols=95 Identities=26% Similarity=0.517 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 106 RQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 106 ~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
.+|..|+..|..+ +.+++|..||+... +||||++|++||||+||++||.++. |.++++|..||.|||.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~l~~~N 77 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQ---YQSLDDMVSDFVLMFDN 77 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHH
Confidence 4677777777764 57899999999988 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
|+.||+++|.+|.+|..|+..|.+..
T Consensus 78 a~~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 78 ACKYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 26
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.3e-23 Score=177.29 Aligned_cols=81 Identities=28% Similarity=0.505 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHH
Q 015200 119 KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLL 198 (411)
Q Consensus 119 ~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~ 198 (411)
+.++||.+||+... +||||++|++||||+||+.||.++. |.++.+|..||+|||.||++||+++|.++.+|..|+
T Consensus 22 ~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~ 96 (103)
T cd05520 22 LLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGE---YETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQ 96 (103)
T ss_pred CccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 58999999999887 9999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 015200 199 EKFEEK 204 (411)
Q Consensus 199 ~~Fe~~ 204 (411)
+.|+++
T Consensus 97 ~~f~~~ 102 (103)
T cd05520 97 KLMQAK 102 (103)
T ss_pred HHHHHh
Confidence 999874
No 27
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=3.3e-23 Score=174.30 Aligned_cols=101 Identities=41% Similarity=0.732 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
..+...|..|+..+.+|+.+++|..||+... +|+||++|++||||++|++||+++. |.|+.+|.+||++||.||+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~---Y~s~~ef~~D~~li~~Na~ 80 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGK---YSSVEEFVADVQLMFSNAK 80 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999998 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
.||+++|.++.+|..|...|++.|..
T Consensus 81 ~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 81 TYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999865
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.9e-23 Score=180.82 Aligned_cols=99 Identities=26% Similarity=0.437 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHH---cCCCCCCCCCCCCcc-ccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhh
Q 015200 103 ELKRQFAAIFRQIT---QHKWAWPFMHPVDVE-GLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 103 el~~~c~~il~~l~---~~~~a~pF~~PVd~~-~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~ 178 (411)
++...|..++..|+ .++.+++|..||+.. . +|+||++|++||||+||++||.++. |.++++|..||+|||.
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~--~p~Y~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAW--YPDYWNRVPVPMDLETIRSRLENRY---YRSLEALRHDVRLILS 98 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCcccc--CCcHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 45567888899999 899999999999998 6 9999999999999999999999999 9999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 015200 179 NAMKYNDERDDVHVMAKSLLEKFEEKWL 206 (411)
Q Consensus 179 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~ 206 (411)
||+.||+++|.++.+|..|+..|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.7e-23 Score=176.15 Aligned_cols=96 Identities=26% Similarity=0.372 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 104 LKRQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 104 l~~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
+...|..|+..|..+ ..++||.++|+... +||||++|++||||+||++||.++. |.|+++|..||.|||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~---Y~s~~ef~~D~~l~f 77 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGY---YKTPEAFDSDMLKVF 77 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 445677777777764 46799999999988 9999999999999999999999999 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEK 204 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~ 204 (411)
.||+.||+++|.++.+|..|++.|+..
T Consensus 78 ~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 78 RNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999864
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=1.9e-23 Score=176.25 Aligned_cols=84 Identities=30% Similarity=0.510 Sum_probs=79.7
Q ss_pred HcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHH
Q 015200 116 TQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAK 195 (411)
Q Consensus 116 ~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~ 195 (411)
..+..+.+|..||+... +||||++|++||||+||++||.++. |.|+.+|.+||+|||.||+.||+++|.|+.+|.
T Consensus 19 ~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~ 93 (103)
T cd05518 19 SGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDK---YATEEELMDDFKLMFRNARHYNEEGSQVYEDAN 93 (103)
T ss_pred CCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 34568999999999988 9999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015200 196 SLLEKFEEK 204 (411)
Q Consensus 196 ~L~~~Fe~~ 204 (411)
.|+..|+++
T Consensus 94 ~le~~~~~~ 102 (103)
T cd05518 94 ILEKVLKEK 102 (103)
T ss_pred HHHHHHHhc
Confidence 999999864
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.1e-23 Score=175.93 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 106 RQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 106 ~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
+.|..|+..|+.+ +.+++|..+|+... +||||++|++||||+||++||.++. |.++.+|..||+|||.|
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~lm~~N 77 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGY---YKSIEDMEKDLDLMVKN 77 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCC---CCCHHHHHHHHHHHHHH
Confidence 5677888888875 46799999999988 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHH
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEE 203 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~ 203 (411)
|+.||+++|.++.+|..|++.|+.
T Consensus 78 a~~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 78 AKTFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999975
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=8e-22 Score=166.62 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHH
Q 015200 118 HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSL 197 (411)
Q Consensus 118 ~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L 197 (411)
++.+++|..+|+... +||||++|++||||+||++||..+. |.++.+|..||+|||.||+.||+++|.++.+|..|
T Consensus 22 ~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l 96 (104)
T cd05522 22 RLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRK---YKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLL 96 (104)
T ss_pred CcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 568999999999887 9999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 015200 198 LEKFEEK 204 (411)
Q Consensus 198 ~~~Fe~~ 204 (411)
++.|++.
T Consensus 97 ~~~f~~l 103 (104)
T cd05522 97 EKEARLL 103 (104)
T ss_pred HHHHHHh
Confidence 9999874
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=1e-21 Score=160.55 Aligned_cols=95 Identities=38% Similarity=0.646 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhc
Q 015200 106 RQFAAIFRQITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 106 ~~c~~il~~l~~~--~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~Y 183 (411)
..|..|+..+..+ +.+++|..||++.. +|+||++|++||||++|+.||..+. |.++.+|.+||++||.||+.|
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~---Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGE---YKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999 99999999999977 9999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 015200 184 NDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
|+++|.++.+|..|...|++.|
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=8.3e-22 Score=158.71 Aligned_cols=84 Identities=38% Similarity=0.706 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCC
Q 015200 108 FAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (411)
Q Consensus 108 c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 187 (411)
|..|+..|++|+.+++|..||+... +|+|+++|++||||++|+.||.++. |.++.+|..||++||.||+.||+++
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~---Y~s~~~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGK---YKSIEEFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTS---SSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccc---hhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 8899999999999999999998887 9999999999999999999999999 9999999999999999999999999
Q ss_pred CHHHHHHHH
Q 015200 188 DDVHVMAKS 196 (411)
Q Consensus 188 s~v~~~A~~ 196 (411)
|.+|.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999974
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.8e-21 Score=163.83 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 104 l~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
|.++|..|+..|+..+ .+.+|..+++... +||||++|++||||+||++||.. |.++.+|.+||.|||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~-----Y~s~~ef~~D~~li~ 74 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH-----YTNAQEFVNDLAQIP 74 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 3456777888877654 5679999998877 99999999999999999999986 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
.||+.||+++|.+|.+|..|+..|..++
T Consensus 75 ~Na~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 75 WNARLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999875
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.5e-20 Score=159.85 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=84.3
Q ss_pred HHHHHHHHHc-CCCCCCCCCCCCcc---ccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhc
Q 015200 108 FAAIFRQITQ-HKWAWPFMHPVDVE---GLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 108 c~~il~~l~~-~~~a~pF~~PVd~~---~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~Y 183 (411)
+..++..+.+ -+.++||..||... ..++|+||++|++||||+||++||.++. |+++++|.+||.|||+||..|
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK---YTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 3455666666 57789999999743 3349999999999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 184 NDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
|+++|.++.+|..|.......+..
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~E 105 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLRE 105 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877665544
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.75 E-value=4.1e-18 Score=144.81 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 104 l~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
+...+..|+..+++|. ++.||.+.++ . .|+||.+|+.||||++|++||.+|. |.++++|..||.|||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~---Y~~ld~~~~D~~lmf 76 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGR---YRRLDKFQEDMFEVL 76 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCC---cCcHHHHHHHHHHHH
Confidence 3446777888888874 6899999988 2 5788999999999999999999999 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
.||++||.+||.+|.+|..|+.+|......+
T Consensus 77 ~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 77 ERARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.74 E-value=2e-18 Score=197.62 Aligned_cols=97 Identities=35% Similarity=0.732 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCC
Q 015200 108 FAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (411)
Q Consensus 108 c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 187 (411)
|..||..|+.|..||||++||++.. +||||+||++||||+||+.|+..+. |.++.+|..||.|||.||.+||++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~---Y~~~eef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGI---YPSPEEFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhccc---CCCHHHHHHHHHHHHHHHHHhccc-
Confidence 8999999999999999999999999 9999999999999999999999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCc
Q 015200 188 DDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 188 s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|.|+..+..|..+|+..|...+|
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhhcC
Confidence 99999999999999999988765
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=4.5e-17 Score=165.98 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHH
Q 015200 119 KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLL 198 (411)
Q Consensus 119 ~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~ 198 (411)
..+++|..+|+... +|+||.||+.||||++|+++|..+. |.++++|..|+.|||.||.+||+++|.||.+|..|+
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~---Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~ 238 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGR---YKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHH
Confidence 57999999999998 9999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccch
Q 015200 199 EKFEEKWLQLLPKVM 213 (411)
Q Consensus 199 ~~Fe~~~~~~~~~~~ 213 (411)
..|...+..+.+...
T Consensus 239 ~~~~~~i~~~~~~~~ 253 (371)
T COG5076 239 KYFLKLIEEIPEEML 253 (371)
T ss_pred HHHHHHHHhccccch
Confidence 999999998866543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=9.2e-16 Score=164.44 Aligned_cols=143 Identities=25% Similarity=0.401 Sum_probs=119.4
Q ss_pred CCCCCchhhhccccCCC---CCCchhhhhhHhhhhHh-hhccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCh
Q 015200 63 NTSKSISIAKEKLKDRH---VASIEKQQQDAFHREEA-AGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDY 138 (411)
Q Consensus 63 ~~~~g~s~~k~~~r~r~---~~~~kk~~~~~~~~~~~-~~k~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdY 138 (411)
-++||.++++...+.++ +++.+...+........ ..+....+...+..++.+|..|..+|||.+||+..+ +|||
T Consensus 562 kv~~gl~~~~~~~~~~~~~~iPg~~E~~~~~~~~~~r~~~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdy 639 (720)
T KOG1472|consen 562 KVYPGLECFKDGVPQIPPRKIPGFRESGWKPEKESYRQEYKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDY 639 (720)
T ss_pred ccccccccccccccccCcccCCCchhhccCcchHHHHhhhcccchhhHHHHhHHhhhhcCCccCCccCcccccc--CCcH
Confidence 38899999998866654 55555444433322222 113444666788999999999999999999999999 9999
Q ss_pred hhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 139 YEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 139 y~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|++|++||||.||+.+|..+. |..+..|.+|+..||.||+.||+.++..|+.|..|...|...+...+.
T Consensus 640 y~~I~~pmDl~tM~~~l~~~~---y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 640 YDVIKHPMDLRTMQNRLKDNQ---YTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred HHHhcccccHHHHhhhccccc---hhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhh
Confidence 999999999999999999999 999999999999999999999999999999999999999888766543
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.40 E-value=1.9e-13 Score=117.41 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCC----CCCCCCHHHHHHHHhchhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKD----GTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~----~~~Y~s~~eF~~Dv~LIf~ 178 (411)
+.+..|..+|..++.++.+|||..||++...++||||++|++||||+||+.+|.+.. ...|..-..+..++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 345678888888888999999999999966679999999999999999999999862 1235556667777777777
Q ss_pred hhhhcCCC
Q 015200 179 NAMKYNDE 186 (411)
Q Consensus 179 Na~~YN~~ 186 (411)
||..+|..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777663
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.22 E-value=4.6e-11 Score=133.46 Aligned_cols=176 Identities=21% Similarity=0.268 Sum_probs=134.8
Q ss_pred CCCC-CCccCCCcCCCCCC--CChhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhccccCCC
Q 015200 3 PMSG-LNQDLGNVGLGKAE--GDTVEVEGLNKTIDDILQKVTQLEQKLNDVEQFYLTKDNNQPNTSKSISIAKEKLKDRH 79 (411)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~le~~~~ev~~~~~~~~~~~~~~~~g~s~~k~~~r~r~ 79 (411)
|.-| |++...++++.++. +.+.+-..+.++..++....+++++...-++. ...+.
T Consensus 488 pLl~~lq~~~~s~rn~~~~~~~~D~~~~~~~d~~k~~~~L~~~~~s~~~l~e~----------------~r~r~------ 545 (1051)
T KOG0955|consen 488 PLLGRLQSLSKSSRNKEQVGREGDLKNKARVDSLKYWQALRLDLESAQLLVEL----------------TRKRE------ 545 (1051)
T ss_pred chhhhhhhhhhccccchhcccccCccchhhhHHHHHHHHHHHHHHHHHHHHHh----------------hhhHH------
Confidence 3344 77778888888885 22244566677777787778888877766665 00000
Q ss_pred CCCchhhhhhHhhhhHhhhccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCC
Q 015200 80 VASIEKQQQDAFHREEAAGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKD 159 (411)
Q Consensus 80 ~~~~kk~~~~~~~~~~~~~k~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~ 159 (411)
..+. ......... ....+....+.+..++..+........|..|||..+ +|||.++|++||||.||+.++.++.
T Consensus 546 --~lk~-~~~~~~~~~-~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~ 619 (1051)
T KOG0955|consen 546 --KLKR-ILVKSQKEA-LELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGA 619 (1051)
T ss_pred --HHHH-HHhchhhhh-hcccCchHHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccc
Confidence 0000 000111111 112455677788899999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 160 GTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 160 ~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
|.++++|.+|+.||..||+.||..+..+|..|..+++.....+....
T Consensus 620 ---y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 620 ---YSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred ---hhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999888876653
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.95 E-value=4.3e-10 Score=96.47 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=39.2
Q ss_pred CCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCC
Q 015200 144 KPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDER 187 (411)
Q Consensus 144 ~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 187 (411)
.||||+||++||.+|. |.++.+|.+||+|||.||.+||+++
T Consensus 63 y~MDL~tIe~RL~ng~---Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGY---YATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 5899999999999999 9999999999999999999999873
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.95 E-value=6.7e-10 Score=124.25 Aligned_cols=94 Identities=28% Similarity=0.494 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCC
Q 015200 107 QFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDE 186 (411)
Q Consensus 107 ~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 186 (411)
.+..|+.+++.-+.+|+|++||+++. +|+||.+|++||||.+|.+++..+. |.+.++|.+||++|+.||..||+.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~---y~s~~e~l~dv~~i~~n~~~~ng~ 1460 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHK---YDSRSEFLDDVNLIYVNSVEYNGA 1460 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccc---cccHHHHhhhhHhhcccceeecCc
Confidence 45667888888899999999999999 9999999999999999999999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 015200 187 RDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 187 ~s~v~~~A~~L~~~Fe~~~ 205 (411)
.+.+..-|+.+-++-...+
T Consensus 1461 e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1461 ESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9998888887666654443
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.83 E-value=4.7e-09 Score=115.34 Aligned_cols=100 Identities=26% Similarity=0.405 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 106 RQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 106 ~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
+.|..|+....++ ..+..|...++... +||||.||+.||++..|+++|..+. |.+..+...||.++|.|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~n 1101 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHK---YNSLKELEKDFMLLFNN 1101 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccc---cchHHHHHHHHHhhcch
Confidence 4577777777754 46899999999998 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|.+||..||.||..|..|+.+|......+..
T Consensus 1102 a~~~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1102 ARTYNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hhhhccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999998877653
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=1.4e-08 Score=108.32 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 104 LKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 104 l~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
+.-++..||..+..+. ....|.+.++... .|+||.+|..||.|..|++|+..+. |.+.+.|..|+.||+
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~---y~~~~~f~~D~~lm~ 127 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGR---YKRLSFFQLDFLLMT 127 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcc---cccHHHHHHHHHHHH
Confidence 3446777777777653 5788999999998 9999999999999999999999999 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKW 205 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~ 205 (411)
.||..||.++|.++.++..|+..|...-
T Consensus 128 ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 128 ENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999999999998754
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.73 E-value=1.4e-08 Score=113.98 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
.-.+...+..|+.++..-+...||..||+... ++|||.||+.||||.|+++.+.... |.+-++|..|+.||++|.
T Consensus 1259 ~V~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~---y~~r~~fle~~~~~~~ns 1333 (1563)
T KOG0008|consen 1259 SVSLSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRL---YESREHFLEELPLIVSNS 1333 (1563)
T ss_pred eeecccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHH---HHHHHHHHHHhHHHhhch
Confidence 33444568889999999999999999999998 9999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWL 206 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~ 206 (411)
.+||++-+.+...+..+....-+.|.
T Consensus 1334 ~~yng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1334 TKYNGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988887776665554
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.68 E-value=1.3e-08 Score=110.04 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=71.2
Q ss_pred cCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHH
Q 015200 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (411)
Q Consensus 117 ~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~ 196 (411)
.+..+++|..+|+... .|+||.||+.||||+|+.+++..+. |.+.++|+.|+.+||.||.+||.+.+....+-..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~---y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~v 374 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGP---YCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAV 374 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhcccc---ccchhHHHHHHHHHHhcchhhccccchhhhhhhh
Confidence 4789999999999999 9999999999999999999999999 9999999999999999999999977665555444
Q ss_pred HHHHHH
Q 015200 197 LLEKFE 202 (411)
Q Consensus 197 L~~~Fe 202 (411)
+..-+.
T Consensus 375 v~~~~s 380 (720)
T KOG1472|consen 375 IMNSKS 380 (720)
T ss_pred hhccCc
Confidence 444444
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.59 E-value=1.4e-08 Score=110.49 Aligned_cols=91 Identities=40% Similarity=0.698 Sum_probs=84.4
Q ss_pred HHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHH
Q 015200 115 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMA 194 (411)
Q Consensus 115 l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A 194 (411)
..+|.++|+|..||+...+++|+||.+|++|||++||..++.++. |.+..+..+|+.-+|.||..||..+.+|+.++
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~---~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~ 80 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNY---YFSASECIADFKTKFSNCYLFNDSGDDVVRMK 80 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCc---cccHhhhhhhccccccchhcccCCccchhhcc
Confidence 457889999999999999999999999999999999999999866 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 015200 195 KSLLEKFEEKWLQL 208 (411)
Q Consensus 195 ~~L~~~Fe~~~~~~ 208 (411)
..++..|.......
T Consensus 81 ~~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 81 QSLEKLFPKKLRSM 94 (640)
T ss_pred ccchhhcccccccc
Confidence 99999987655544
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.99 E-value=1.4e-06 Score=87.62 Aligned_cols=88 Identities=26% Similarity=0.263 Sum_probs=75.9
Q ss_pred HHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCH
Q 015200 110 AIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDD 189 (411)
Q Consensus 110 ~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~ 189 (411)
.++..+-+...-..|.-||...- .|+|.+||+.|||+.|++.|++-+. |.+..+|..|.+++..||..||...+.
T Consensus 26 hhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~---yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 26 HHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTR---YLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred HHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCcc---ceechhhhhhhcccccchhhhhcCCcc
Confidence 34444455555566777888777 8999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015200 190 VHVMAKSLLEKFE 202 (411)
Q Consensus 190 v~~~A~~L~~~Fe 202 (411)
++..|++|..+-.
T Consensus 101 ~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 101 PIVAAKRLCPVRL 113 (418)
T ss_pred ccccccccchhhc
Confidence 9999999876543
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.79 E-value=1.2e-05 Score=81.12 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=73.8
Q ss_pred HHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHH
Q 015200 112 FRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVH 191 (411)
Q Consensus 112 l~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~ 191 (411)
.+++........|..||.... +|.|.-+|++|+|++|++.+..++. |.| -+|..|+.||+.||++||.++..+|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~and---y~S-~~f~~D~kl~~l~amT~gehsk~yy 290 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSAND---YES-LSFTQDRKLIALKAVTNGEHSKSYY 290 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhh---hhh-hhhhcccchhhHHHHhcCCcchHHH
Confidence 444455567888899998888 9999999999999999999999999 999 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 015200 192 VMAKSLLE 199 (411)
Q Consensus 192 ~~A~~L~~ 199 (411)
.+|+.+..
T Consensus 291 elank~lh 298 (418)
T KOG1828|consen 291 ELANKQLH 298 (418)
T ss_pred HHHHhhhh
Confidence 99998765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.87 E-value=0.00031 Score=72.06 Aligned_cols=87 Identities=36% Similarity=0.516 Sum_probs=79.4
Q ss_pred HHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHH
Q 015200 115 ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMA 194 (411)
Q Consensus 115 l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A 194 (411)
...+..+|+|..++.... .|+|+++|..+|+++|.+.++..+. |....+|..|..++|.||..||+...+.+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 275 SQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNY---YRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred cccccccccccccCCccc--ccchhhhhhcccccccchhhhhccc---CCCccccccccchhhhcccccchhhhhhhhhc
Confidence 345567899999999998 9999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 015200 195 KSLLEKFEEKWL 206 (411)
Q Consensus 195 ~~L~~~Fe~~~~ 206 (411)
..+...+.....
T Consensus 350 ~~~~~~~~~~~~ 361 (371)
T COG5076 350 NVLEDFVIKKTR 361 (371)
T ss_pred cchhhhHhhhhh
Confidence 988888776543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.05 E-value=0.0069 Score=53.33 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCccchHH
Q 015200 145 PMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (411)
Q Consensus 145 PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (411)
|.||.-|++||+.|. |.++.+|.+||-.|+.-++.=.+....+-+....+..+|-+.+..+++++..+
T Consensus 59 p~dL~~V~kkl~~G~---Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGF---YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccc---eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 899999999999999 99999999999999998887766555555556667778888998888876543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.50 E-value=0.45 Score=53.05 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=52.8
Q ss_pred cCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 015200 142 IEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEK 204 (411)
Q Consensus 142 Ik~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~ 204 (411)
-.-|..|..|+.+|+++. |.+.+.|..||-.|..||.+|.+.+-.+...+..|...|...
T Consensus 1050 fpvpls~evi~~rlEn~y---Yrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNY---YRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhh---hhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 456789999999999998 999999999999999999999998887777777777777654
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=0.47 Score=54.57 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCCCCCCCCCccc---cCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHH--HHhchhhhhhhcCCCC
Q 015200 120 WAWPFMHPVDVEG---LGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYA--DVRLVFKNAMKYNDER 187 (411)
Q Consensus 120 ~a~pF~~PVd~~~---l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~--Dv~LIf~Na~~YN~~~ 187 (411)
.+..|..|++... +.+++|..+|+.|||+...-.++..+. |.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~---~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL---KLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh---HHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3567888887432 225689999999999999999999999 999999999 9999999999999975
No 56
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=71.94 E-value=11 Score=31.56 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 160 GTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 160 ~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
|+.|.|..-|...|..|-.....++..+..+..||..+...|++.|...
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4469999999999988888888777778899999999999999999765
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=62.68 E-value=0.95 Score=49.42 Aligned_cols=76 Identities=8% Similarity=-0.101 Sum_probs=68.3
Q ss_pred CCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHHHHHH
Q 015200 121 AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEK 200 (411)
Q Consensus 121 a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~ 200 (411)
...|..-++... +|+||.+++-||.++...+++..+. |.....|..|+.++|.|++.|+....-++..+..|.+.
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~E---vfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQE---VFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhccc---ceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 566777777777 9999999999999999999999999 99999999999999999999999998888888877665
Q ss_pred H
Q 015200 201 F 201 (411)
Q Consensus 201 F 201 (411)
+
T Consensus 288 d 288 (629)
T KOG1827|consen 288 D 288 (629)
T ss_pred c
Confidence 3
No 58
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=54.00 E-value=7.2 Score=44.01 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=54.4
Q ss_pred CCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCC--------------C----------CHHH------HHHHHh
Q 015200 125 MHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGY--------------R----------NVRE------IYADVR 174 (411)
Q Consensus 125 ~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y--------------~----------s~~e------F~~Dv~ 174 (411)
.-++|... .|-|..+..-|.+|+|++..|.+.. | . ++.+ ...-+.
T Consensus 87 v~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~---k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~ 161 (1113)
T KOG0644|consen 87 VPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRA---KDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAP 161 (1113)
T ss_pred ccCcCCCC--CcceeeeecccchhcchhHHHHhhh---hhcccccccccccccccccCcccccceeccCCcchhhhhcCc
Confidence 45666666 8889999999999999999998876 5 2 3333 667788
Q ss_pred chhhhhhhcCCCCCHHHH--HHHHHHHHHHHH
Q 015200 175 LVFKNAMKYNDERDDVHV--MAKSLLEKFEEK 204 (411)
Q Consensus 175 LIf~Na~~YN~~~s~v~~--~A~~L~~~Fe~~ 204 (411)
+|-.||..++.|++.|-. +.++|.-.|...
T Consensus 162 ~i~~at~~~akPgtmvqkmk~ikrLlgH~naV 193 (1113)
T KOG0644|consen 162 SIGCATFSIAKPGTMVQKMKNIKRLLGHRNAV 193 (1113)
T ss_pred ccccceeeecCcHHHHHHHHHHHHHHhhhhhe
Confidence 999999999999994432 233344444333
No 59
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.46 E-value=35 Score=27.92 Aligned_cols=49 Identities=29% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCCCCccCCCcCCCCCCC-----ChhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 4 MSGLNQDLGNVGLGKAEG-----DTVEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
|||-|.+....--....+ +..|...++.++|+|.+-++.||++-..+..
T Consensus 1 ms~~ngd~~~~~e~~~~~~~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~ 54 (83)
T PF03670_consen 1 MSGPNGDDGMSVEDGGEEEDDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHLHA 54 (83)
T ss_pred CCCCCCCCCCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 788877655432222221 2356678888999999999888888766654
No 60
>PHA01750 hypothetical protein
Probab=42.68 E-value=52 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=26.6
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
.|+..++-++.++.-+.+.|++++.|+.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 58899999999999999999999999876
No 61
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.83 E-value=74 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=24.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
..+++|-..|..+.++|++|...|+.+..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999998876653
No 62
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=28.20 E-value=1.3e+02 Score=24.81 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=35.0
Q ss_pred hhcccCCHHHHHHHHHHhc-cCChHhHHHHHHHHHhhCCCCC
Q 015200 265 QKCRKMSTEEKKNLGTALT-RLSPEDLCKALEIVAENNPSFH 305 (411)
Q Consensus 265 ~~~r~mT~eEK~~L~~~I~-~L~~e~L~~Vi~II~~~~P~~~ 305 (411)
.+...+|.+|-.+++...+ .+++++...|+.|++....++.
T Consensus 10 ~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIf 51 (85)
T PF11116_consen 10 QKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIF 51 (85)
T ss_pred HHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 4557799999999999988 5799999999999998776654
No 63
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.12 E-value=85 Score=19.53 Aligned_cols=20 Identities=15% Similarity=0.541 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015200 32 TIDDILQKVTQLEQKLNDVE 51 (411)
Q Consensus 32 ~~~~~~~~~~~le~~~~ev~ 51 (411)
.++.+-+++.+||++++++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 46667777888899988765
No 64
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=25.22 E-value=1.2e+02 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=19.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKL 47 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~ 47 (411)
+.++.|.+.++++..++++||.++
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888888888765
No 65
>PRK15396 murein lipoprotein; Provisional
Probab=24.06 E-value=1.4e+02 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
.+++.+..+|+.+.++++++.+.+.....
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~ 53 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRS 53 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999877764
No 66
>PF14933 CEP19: CEP19-like protein
Probab=22.48 E-value=2.3e+02 Score=25.80 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred EEEeccCCChHHHHHhccccccccccccchhhhHHHHHHHHhcccCCCCCC
Q 015200 311 VDLDMDAQVHILCWIRLSSDIVCPFFHFLSSYSVFVQESLKAASRSSGDMG 361 (411)
Q Consensus 311 IElDId~L~~~TL~~~L~~~~~~~~~~~~~~~~~yV~~~l~~~~~~~~~~~ 361 (411)
-+.|+..|++.+|. +- +.-+...++.-..++|.-|
T Consensus 106 ~~~dlNk~~~~eL~-~~---------------K~~Md~~F~~N~~~p~D~~ 140 (159)
T PF14933_consen 106 PEEDLNKLDDEELA-KV---------------KEIMDELFEKNRIKPGDPG 140 (159)
T ss_pred CccccccCCHHHHH-HH---------------HHHHHHHHHHcCCCCCCCC
Confidence 56799999999999 99 8888888888777777654
No 67
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=21.60 E-value=94 Score=24.98 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHhccCChHhHHHHHHHHHh
Q 015200 270 MSTEEKKNLGTALTRLSPEDLCKALEIVAE 299 (411)
Q Consensus 270 mT~eEK~~L~~~I~~L~~e~L~~Vi~II~~ 299 (411)
.|..||.+|+.+|.++ .+-|..+|+.-.+
T Consensus 3 Vt~~EkeQLS~AID~m-nEGLD~fI~lYNe 31 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRM-NEGLDTFIQLYNE 31 (84)
T ss_pred CchHHHHHHHHHHHHH-HhhHHHHHHHHcc
Confidence 6889999999999999 4567777666554
No 68
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=20.77 E-value=96 Score=26.09 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=29.0
Q ss_pred hcccCCHHHHHHHHHHhc-cCChHhHHHHHHHHHhh
Q 015200 266 KCRKMSTEEKKNLGTALT-RLSPEDLCKALEIVAEN 300 (411)
Q Consensus 266 ~~r~mT~eEK~~L~~~I~-~L~~e~L~~Vi~II~~~ 300 (411)
+-+|-|.+|-+.|...+. +++++++..|+++|.+.
T Consensus 81 Nl~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 81 NLRPTTAVELRAIIESLESRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp HH--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 457888999999999998 58999999999999875
Done!