Query 015200
Match_columns 411
No_of_seqs 365 out of 1552
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 6.2E-29 2.1E-33 216.7 11.2 111 97-210 16-129 (130)
2 3g0l_A Hwalp4, bromodomain adj 100.0 8.2E-29 2.8E-33 211.9 9.3 103 103-210 13-115 (117)
3 3jvl_A Bromodomain-containing 100.0 5.7E-29 1.9E-33 213.7 7.7 109 99-210 5-116 (120)
4 3d7c_A General control of amin 100.0 3E-28 1E-32 206.9 11.9 104 101-209 5-108 (112)
5 3mb3_A PH-interacting protein; 99.9 2.6E-28 8.9E-33 213.8 9.7 108 100-212 18-126 (135)
6 2oss_A HUNK1 protein, bromodom 99.9 5.2E-28 1.8E-32 210.0 11.4 105 103-210 21-125 (127)
7 3nxb_A CAT eye syndrome critic 99.9 3.9E-28 1.3E-32 207.3 9.7 101 102-207 15-115 (116)
8 3p1f_A CREB-binding protein; s 99.9 6.3E-28 2.2E-32 206.9 10.3 107 101-210 9-116 (119)
9 3q2e_A Bromodomain and WD repe 99.9 6.5E-28 2.2E-32 208.2 10.4 106 103-213 10-116 (123)
10 1e6i_A Transcriptional activat 99.9 5.3E-28 1.8E-32 208.2 9.7 102 103-209 13-114 (121)
11 2i7k_A Bromodomain-containing 99.9 1.8E-27 6.1E-32 203.9 12.5 105 100-209 5-109 (117)
12 2yyn_A Transcription intermedi 99.9 1.6E-27 5.6E-32 208.9 12.0 104 103-212 20-125 (135)
13 4alg_A Bromodomain-containing 99.9 9.7E-28 3.3E-32 214.9 10.7 107 102-211 31-137 (154)
14 2dat_A Possible global transcr 99.9 1.4E-27 4.8E-32 206.1 11.3 104 102-210 12-121 (123)
15 3fkm_X Signaling protein; brom 99.9 1.2E-27 4.3E-32 216.6 11.2 108 99-209 17-124 (166)
16 2d9e_A Peregrin; four-helix bu 99.9 2.2E-27 7.7E-32 204.3 12.0 101 103-208 7-107 (121)
17 3mb4_A Protein polybromo-1; PB 99.9 2.2E-27 7.5E-32 205.1 9.9 104 101-209 13-122 (124)
18 2grc_A Probable global transcr 99.9 2E-27 6.9E-32 206.8 9.5 106 100-210 8-120 (129)
19 3rcw_A Bromodomain-containing 99.9 4.2E-27 1.5E-31 206.1 11.4 106 98-208 8-113 (135)
20 3mqm_A Probable histone-lysine 99.9 5E-27 1.7E-31 203.3 10.2 106 102-212 8-119 (126)
21 3hme_A Bromodomain-containing 99.9 6.1E-27 2.1E-31 202.2 10.5 101 102-207 12-112 (123)
22 3iu5_A Protein polybromo-1; PB 99.9 7.6E-27 2.6E-31 199.4 10.0 103 103-210 5-113 (116)
23 3k2j_A Protein polybromo-1; PB 99.9 1.2E-26 4.2E-31 202.1 10.7 106 99-209 13-124 (130)
24 3ljw_A Protein polybromo-1; al 99.9 1.8E-26 6.3E-31 198.2 10.5 102 102-208 7-114 (120)
25 3uv4_A Second bromodomain of h 99.9 1E-25 3.5E-30 202.5 10.7 105 104-213 30-135 (158)
26 3tlp_A Protein polybromo-1; PB 99.9 1.6E-25 5.4E-30 199.4 10.8 105 106-215 27-138 (150)
27 2ri7_A Nucleosome-remodeling f 99.9 1.8E-25 6.1E-30 203.2 10.2 102 102-208 71-172 (174)
28 3o36_A Transcription intermedi 99.9 3.3E-25 1.1E-29 203.5 10.4 104 101-210 79-184 (184)
29 3dai_A ATPase family AAA domai 99.9 8E-25 2.7E-29 190.6 12.0 102 100-206 7-112 (130)
30 3uv5_A Transcription initiatio 99.9 3.7E-24 1.3E-28 207.2 10.9 106 101-211 12-117 (265)
31 3u5n_A E3 ubiquitin-protein li 99.9 5E-24 1.7E-28 199.2 10.9 108 101-211 79-203 (207)
32 2ro1_A Transcription intermedi 99.9 2.3E-24 8E-29 199.0 7.3 99 103-211 76-179 (189)
33 2dkw_A Hypothetical protein KI 99.9 1.8E-23 6.3E-28 182.3 11.7 99 100-208 9-111 (131)
34 3uv5_A Transcription initiatio 99.9 3.3E-23 1.1E-27 200.6 14.0 101 106-211 139-240 (265)
35 3aad_A Transcription initiatio 99.9 2E-23 6.9E-28 204.8 8.2 103 101-208 45-147 (292)
36 3aad_A Transcription initiatio 99.9 3.4E-22 1.2E-26 196.0 11.9 99 107-210 173-272 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.9E-22 6.4E-27 199.4 7.3 91 117-212 177-268 (311)
38 2r10_A Chromatin structure-rem 99.9 3.3E-22 1.1E-26 201.4 8.0 87 117-208 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 1.6E-20 5.5E-25 189.2 7.5 99 103-208 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 3.4E-20 1.1E-24 183.3 7.5 95 107-208 32-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 1.3E-17 4.6E-22 147.0 11.4 98 103-209 7-110 (147)
42 2jns_A Bromodomain-containing 99.7 4.1E-18 1.4E-22 139.2 4.0 73 265-353 13-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.6 3.3E-15 1.1E-19 136.9 7.6 98 102-215 74-171 (183)
44 2lm0_A AF4/FMR2 family member 94.9 0.023 7.7E-07 48.0 4.2 58 268-327 57-115 (125)
45 2yy0_A C-MYC-binding protein; 46.2 32 0.0011 24.5 4.7 31 22-52 17-47 (53)
46 1jcd_A Major outer membrane li 39.0 39 0.0014 24.1 4.2 28 24-51 4-31 (52)
47 3vmx_A Voltage-gated hydrogen 32.2 67 0.0023 22.6 4.3 31 22-52 2-32 (48)
48 1aq5_A Matrilin-1, CMP, cartil 22.1 1E+02 0.0034 21.6 3.7 24 24-47 23-46 (47)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=6.2e-29 Score=216.65 Aligned_cols=111 Identities=41% Similarity=0.790 Sum_probs=102.5
Q ss_pred hhccHHHHHHHHHHHHHHHHcCC---CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHH
Q 015200 97 AGRRMQELKRQFAAIFRQITQHK---WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADV 173 (411)
Q Consensus 97 ~~k~~~el~~~c~~il~~l~~~~---~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv 173 (411)
+.+++.+.++.|..||..|+.++ .+|||..||++..+++||||++|++||||+||++||.++. |.++++|.+||
T Consensus 16 k~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv 92 (130)
T 2ouo_A 16 KSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADV 92 (130)
T ss_dssp ---CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 34567788899999999999987 4899999999988889999999999999999999999999 99999999999
Q ss_pred hchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 174 RLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 174 ~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
+|||.||++||+++|.|+.+|..|+..|++.|..+..
T Consensus 93 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 93 RLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999988753
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=8.2e-29 Score=211.86 Aligned_cols=103 Identities=34% Similarity=0.647 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
+.++.|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+.
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 87 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCET 87 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
||+++|.++.+|..|+..|++.|..++.
T Consensus 88 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 88 FNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988753
No 3
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=5.7e-29 Score=213.75 Aligned_cols=109 Identities=42% Similarity=0.792 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHHHHHcCCC---CCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhc
Q 015200 99 RRMQELKRQFAAIFRQITQHKW---AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (411)
Q Consensus 99 k~~~el~~~c~~il~~l~~~~~---a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~L 175 (411)
+.+.+.++.|..||..|++++. +|||..||++..+++||||++|++||||+||++||.++. |.++++|.+||+|
T Consensus 5 ~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~l 81 (120)
T 3jvl_A 5 SKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRDAQEFGADVRL 81 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHH
Confidence 4456788999999999999886 999999999999899999999999999999999999999 9999999999999
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 176 If~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
||.||++||+++|.|+.+|..|+..|++.|..+..
T Consensus 82 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 82 MFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999988864
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=3e-28 Score=206.91 Aligned_cols=104 Identities=30% Similarity=0.452 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
..++...|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~Dv~li~~Na 79 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRY---YVTRKLFVADLQRVIANC 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCC---CcCHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999987 9999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
++||+++|.++.+|..|+..|++.|..+.
T Consensus 80 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 80 REYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998763
No 5
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=2.6e-28 Score=213.81 Aligned_cols=108 Identities=31% Similarity=0.541 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
.+..+.+.|..||..|++++.++||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.|
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGN---YESPMELCKDVRLIFSN 92 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999977 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCC-CCHHHHHHHHHHHHHHHHHHhhCccc
Q 015200 180 AMKYNDE-RDDVHVMAKSLLEKFEEKWLQLLPKV 212 (411)
Q Consensus 180 a~~YN~~-~s~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (411)
|++||++ +|.||.+|..|+..|++.|..+++.+
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999999999887654
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=5.2e-28 Score=209.98 Aligned_cols=105 Identities=35% Similarity=0.666 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
++...|..||..|++|+.+|||..||++..+++||||++|++||||+||++||.++. |.++++|.+||+|||.||++
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 556678889999999999999999999876669999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
||+++|.|+.+|..|+..|++.|..+..
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999987753
No 7
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=3.9e-28 Score=207.32 Aligned_cols=101 Identities=29% Similarity=0.572 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.++...|..||..|++++.++||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGL---YCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999997 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
+||+++|.++.+|..|+..|++.|.+
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=6.3e-28 Score=206.94 Aligned_cols=107 Identities=32% Similarity=0.558 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 101 MQELKRQFAAIFRQITQ-HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~-~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
..++.+.|..+|..|++ ++.++||..||++..+++||||++|++||||+||++||+++. |.++++|.+||+|||.|
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHH
Confidence 45788899999999988 789999999999986669999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|++||+++|.++.+|..|+..|++.|..++.
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987753
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=208.16 Aligned_cols=106 Identities=32% Similarity=0.537 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
.+.++|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++++|..||+|||.||+.
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~~ 84 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKDIRLIFSNAKA 84 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHhhCccch
Q 015200 183 YNDE-RDDVHVMAKSLLEKFEEKWLQLLPKVM 213 (411)
Q Consensus 183 YN~~-~s~v~~~A~~L~~~Fe~~~~~~~~~~~ 213 (411)
||++ +|.||.+|..|+..|++.|..+++.+.
T Consensus 85 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 85 YTPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp HSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 999999999999999999999876543
No 10
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.95 E-value=5.3e-28 Score=208.21 Aligned_cols=102 Identities=32% Similarity=0.610 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
..+..|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~~ 87 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNK---YQKMEDFIYDARLVFNNCRM 87 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999887 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
||+++|.++.+|..|+..|++.|..+.
T Consensus 88 yN~~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 88 YNGENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998873
No 11
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=203.86 Aligned_cols=105 Identities=29% Similarity=0.364 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
...++...|..||..|++++.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.|
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNND---YQSIEELKDNFKLMCTN 79 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTS---CCSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHH
Confidence 345778899999999999999999999999876 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
|++||+++|.++.+|..|++.|++.|....
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997754
No 12
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=208.95 Aligned_cols=104 Identities=31% Similarity=0.528 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcC--CCCCCCCCHHHHHHHHhchhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~--~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
..++.|..||..|++|+.+++|..||+. . +||||++|++||||+||++||.+ +. |.++++|.+||+|||.||
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmDL~tI~~kL~~~~~~---Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-T--VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHHSSSCC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-c--CCCHHHHcCCCCCHHHHHHHHhccccC---CCCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999997 3 99999999999999999999998 47 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhCccc
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (411)
++||+++|.|+.+|..|+..|++.|..+++..
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999998754
No 13
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=9.7e-28 Score=214.85 Aligned_cols=107 Identities=33% Similarity=0.623 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.++...|..||..|++++.+|||..||++..+++||||++|++||||+||++||+++. |.++++|.+||+|||.||+
T Consensus 31 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3555678889999999999999999999997779999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
+||+++|.|+.+|..|+..|++.|..+.+.
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999999999999988654
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=206.10 Aligned_cols=104 Identities=27% Similarity=0.415 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhc
Q 015200 102 QELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~L 175 (411)
..+.+.|..||+.|++++ .++||..||+... +||||++|++||||+||++||+++. |.++++|.+||+|
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~l 86 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLGDLEKDVML 86 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTC---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHH
Confidence 467889999999999986 6999999999887 9999999999999999999999999 9999999999999
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 176 If~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
||.||++||+++|.||.+|..|++.|++.|+.++.
T Consensus 87 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 87 LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999988753
No 15
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.2e-27 Score=216.64 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhh
Q 015200 99 RRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 99 k~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~ 178 (411)
....++...|..||..|++++.++||..||++..+++||||++|++||||+||++||.++. |.++.+|.+||+|||.
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQ---YAYPSEFVKDVQLIFD 93 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCC---CCCHHHHHHHHHHHHH
Confidence 4455788899999999999999999999999887779999999999999999999999999 9999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 179 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
||++||+++|.|+.+|..|+..|++.|..+.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999998874
No 16
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=204.35 Aligned_cols=101 Identities=26% Similarity=0.350 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
++...|..||..|++|+.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~Na~~ 81 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYR---YLNFDDFEEDFNLIVSNCLK 81 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
||+++|.+|.+|..|++.|+..|..+
T Consensus 82 yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 82 YNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 17
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=2.2e-27 Score=205.12 Aligned_cols=104 Identities=23% Similarity=0.420 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHc------CCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHh
Q 015200 101 MQELKRQFAAIFRQITQ------HKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVR 174 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~------~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~ 174 (411)
..++.+.|..|+..|++ |+.++||..||+... +||||++|++||||+||++||.++. |.++++|.+||+
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~ 87 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANK---YQDIDSMVEDFV 87 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHH
Confidence 34677899999999998 667899999999887 9999999999999999999999999 999999999999
Q ss_pred chhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 175 LVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 175 LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
|||.||++||+++|.||.+|..|++.|++.|+++.
T Consensus 88 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 88 MMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998874
No 18
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=2e-27 Score=206.76 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHH
Q 015200 100 RMQELKRQFAAIFRQITQHK-------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 172 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~-------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~D 172 (411)
+...+.+.|..||..|++++ .++||..||+... +||||++|++||||+||++||.++. |.++.+|.+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D 82 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHK---YRSLNDLEKD 82 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHH
Confidence 34578889999999999875 6899999999877 9999999999999999999999999 9999999999
Q ss_pred HhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 173 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 173 v~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|+|||.||++||+++|.||.+|..|+..|++.|..+..
T Consensus 83 v~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 83 VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999988743
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=4.2e-27 Score=206.10 Aligned_cols=106 Identities=26% Similarity=0.440 Sum_probs=100.5
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchh
Q 015200 98 GRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 98 ~k~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf 177 (411)
..++..+...|..||..|++|+.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||
T Consensus 8 ~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~ 82 (135)
T 3rcw_A 8 ELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQG---YKNLHEFEEDFDLII 82 (135)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Confidence 34556788899999999999999999999999987 9999999999999999999999999 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
.||++||+++|.+|.+|..|++.|++.|...
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999766
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=203.34 Aligned_cols=106 Identities=26% Similarity=0.349 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhc
Q 015200 102 QELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~L 175 (411)
..+...|..|+..|+++. .+|||..||+... +||||++|++||||+||++||.++. |.++++|.+||+|
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~l 82 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGY---YKTVEAFDADMLK 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHH
Confidence 456678889999998864 5999999999987 9999999999999999999999999 9999999999999
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCccc
Q 015200 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKV 212 (411)
Q Consensus 176 If~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~ 212 (411)
||.||++||+++|.+|.+|..|++.|++.|..+.+.+
T Consensus 83 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 83 VFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876544
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.94 E-value=6.1e-27 Score=202.16 Aligned_cols=101 Identities=28% Similarity=0.393 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
..+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.||+
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANE---YKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHHHH
Confidence 3577789999999999999999999999887 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHh
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQ 207 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~ 207 (411)
.||+++|.++.+|..|++.|++.|.+
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=7.6e-27 Score=199.43 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhch
Q 015200 103 ELKRQFAAIFRQITQH------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (411)
Q Consensus 103 el~~~c~~il~~l~~~------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LI 176 (411)
+.++.|..|+..|+++ +.++||..||+... +||||++|++||||+||++||.++. |.++++|.+||+||
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li 79 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLL 79 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTC---CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence 3567899999999988 46999999999887 9999999999999999999999999 99999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 177 f~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
|.||++||+++|.++.+|..|++.|++.|..+..
T Consensus 80 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 80 FNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988754
No 23
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=202.15 Aligned_cols=106 Identities=23% Similarity=0.397 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHH
Q 015200 99 RRMQELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYAD 172 (411)
Q Consensus 99 k~~~el~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~D 172 (411)
.+...+..+|..++..|.++. .++||..||+... +||||++|++||||+||++||.++. |.++++|.+|
T Consensus 13 ~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~---Y~s~~ef~~D 87 (130)
T 3k2j_A 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQE---YETLDHLECD 87 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCC---CCCHHHHHHH
Confidence 344578889999999999864 4999999999887 9999999999999999999999999 9999999999
Q ss_pred HhchhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 173 VRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 173 v~LIf~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
|+|||.||++||+++|.|+.+|..|+..|++.|..+.
T Consensus 88 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 124 (130)
T 3k2j_A 88 LNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELA 124 (130)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998773
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=1.8e-26 Score=198.22 Aligned_cols=102 Identities=25% Similarity=0.382 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhc
Q 015200 102 QELKRQFAAIFRQITQHKW------AWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRL 175 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~------a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~L 175 (411)
..+...|..++..|+.++. +++|..||+... +||||++|++||||+||++||.++. |.++++|.+||+|
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~l 81 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGS---YKSIHAMAKDIDL 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCC---CCCHHHHHHHHHH
Confidence 4566789999999998766 999999999887 9999999999999999999999999 9999999999999
Q ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 176 VFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 176 If~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
||.||+.||+++|.|+.+|..|++.|++.|.++
T Consensus 82 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 82 LAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999876
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=1e-25 Score=202.55 Aligned_cols=105 Identities=26% Similarity=0.480 Sum_probs=93.5
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhh
Q 015200 104 LKRQFAAIFRQ-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMK 182 (411)
Q Consensus 104 l~~~c~~il~~-l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~ 182 (411)
+...|..|+.. |+.++.+|||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHH
Confidence 33444555444 666899999999999987 9999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhCccch
Q 015200 183 YNDERDDVHVMAKSLLEKFEEKWLQLLPKVM 213 (411)
Q Consensus 183 YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~~ 213 (411)
||+++|.|+.+|..|...|+..|..+...+.
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754443
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=199.44 Aligned_cols=105 Identities=26% Similarity=0.438 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcC-------CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhh
Q 015200 106 RQFAAIFRQITQH-------KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 106 ~~c~~il~~l~~~-------~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~ 178 (411)
.+|..|+..|+++ +.++||..||+... +||||++|++||||+||++||+++. |.++++|.+||+|||.
T Consensus 27 ~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 27 QRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDK---YAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 3566666666654 45999999999887 9999999999999999999999999 9999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCccchHH
Q 015200 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (411)
Q Consensus 179 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (411)
||++||+++|.||.+|..|+..|++.|..+.+...++
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 9999999999999999999999999999998765443
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=1.8e-25 Score=203.24 Aligned_cols=102 Identities=30% Similarity=0.562 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.+....|..||..|++|+.++||..||++.. +||||++|++||||+||++||+++. |.++++|.+||+|||.||+
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTC---CCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999987 9999999999999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
+||+++|.++.+|..|+..|++.|..+
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998765
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.92 E-value=3.3e-25 Score=203.51 Aligned_cols=104 Identities=31% Similarity=0.531 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcC--CCCCCCCCHHHHHHHHhchhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDG--KDGTGYRNVREIYADVRLVFK 178 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~--~~~~~Y~s~~eF~~Dv~LIf~ 178 (411)
...+.+.|..||..|+.|+.+++|..||+.. +||||++|++||||+||++||++ +. |.++++|.+||+|||.
T Consensus 79 ~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~---Y~s~~ef~~Dv~li~~ 152 (184)
T 3o36_A 79 TPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSM---YSKPEDFVADFRLIFQ 152 (184)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCS---CCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHH
Confidence 3466779999999999999999999999854 89999999999999999999998 57 9999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 179 NAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 179 Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
||++||+++|.|+.+|..|+..|++.|..++|
T Consensus 153 Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 153 NCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999876
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.92 E-value=8e-25 Score=190.57 Aligned_cols=102 Identities=28% Similarity=0.440 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
.+.++...|..++..|..++.++||..||++.. +||||++|++||||+||++||.++. |.++++|.+||+|||.|
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~N 81 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHK---YLTVKDYLRDIDLICSN 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCC---CCCHHHHHHHHHHHHHH
Confidence 345777799999999999999999999999997 9999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCHH----HHHHHHHHHHHHHHHH
Q 015200 180 AMKYNDERDDV----HVMAKSLLEKFEEKWL 206 (411)
Q Consensus 180 a~~YN~~~s~v----~~~A~~L~~~Fe~~~~ 206 (411)
|++||+++|++ +.+|..|++.+...+.
T Consensus 82 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 82 ALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999977 6777888888877775
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=3.7e-24 Score=207.22 Aligned_cols=106 Identities=25% Similarity=0.510 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
...+...|..||..|++++.++||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~---Y~~~~~f~~D~~li~~Na 86 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNS 86 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCC---CCCHHHHHHHHHHHHhhh
Confidence 34777899999999999999999999999998 9999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
++||+++|.|+.+|..|...|++.|..+.++
T Consensus 87 ~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 87 ATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999887543
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=5e-24 Score=199.18 Aligned_cols=108 Identities=30% Similarity=0.530 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
.....+.|..||..|++|+.++||..||+. . +||||++|++||||+||++||+++.++.|.++++|.+||+|||.||
T Consensus 79 s~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 79 SPVDQRKCERLLLYLYCHELSIEFQEPVPA-S--IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp CHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccchhhhhccCCh-h--hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 345667999999999999999999999987 3 9999999999999999999999732223999999999999999999
Q ss_pred hhcCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 181 MKYND-----------------ERDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 181 ~~YN~-----------------~~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
++||+ ++|.|+.+|..|+..|+++|..++|.
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999 99999999999999999999999884
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=2.3e-24 Score=198.96 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcC--CCCChHHHHHHhcCC---CCCCCCCHHHHHHHHhchh
Q 015200 103 ELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIE--KPMDFSTIKNKMDGK---DGTGYRNVREIYADVRLVF 177 (411)
Q Consensus 103 el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk--~PMDL~tIk~KL~~~---~~~~Y~s~~eF~~Dv~LIf 177 (411)
..++.|..||..|+.|+.+|||++||+ |+||+||+ +||||+||++||+++ . |.++++|.+||+|||
T Consensus 76 ~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~---Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPP---YSSPQEFAQDVGRMF 146 (189)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcc---cCCHHHHHHHHHHHH
Confidence 445789999999999999999999997 78999998 899999999999999 7 999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 178 KNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 178 ~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
.||++|| +++.++.+|..|++.|+++|..+++.
T Consensus 147 ~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 147 KQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999 58889999999999999999999764
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=182.31 Aligned_cols=99 Identities=27% Similarity=0.483 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhh
Q 015200 100 RMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKN 179 (411)
Q Consensus 100 ~~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~N 179 (411)
.+.++...|..||..|++++.++||..| +||||++|++||||+||++||.++. |.++.+|.+||+|||.|
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~~f~~D~~Li~~N 78 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHN---YLTAKDFLKDIDLICSN 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTC---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCC---CCCHHHHHHHHHHHHHH
Confidence 4457778999999999999999999998 7999999999999999999999999 99999999999999999
Q ss_pred hhhcCCCCCH----HHHHHHHHHHHHHHHHHhh
Q 015200 180 AMKYNDERDD----VHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 180 a~~YN~~~s~----v~~~A~~L~~~Fe~~~~~~ 208 (411)
|++||+++|+ |+.+|..|++.|...+..-
T Consensus 79 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~ 111 (131)
T 2dkw_A 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAE 111 (131)
T ss_dssp HHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 5689999999998888543
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=3.3e-23 Score=200.59 Aligned_cols=101 Identities=27% Similarity=0.488 Sum_probs=93.0
Q ss_pred HHHHHHHHH-HHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcC
Q 015200 106 RQFAAIFRQ-ITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYN 184 (411)
Q Consensus 106 ~~c~~il~~-l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN 184 (411)
..|..++.. ++.|+.+|||..||++.. +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++||
T Consensus 139 ~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~---Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 139 FILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHC
Confidence 355565544 788999999999999988 9999999999999999999999999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCcc
Q 015200 185 DERDDVHVMAKSLLEKFEEKWLQLLPK 211 (411)
Q Consensus 185 ~~~s~v~~~A~~L~~~Fe~~~~~~~~~ 211 (411)
+++|.||.+|..|+..|+..|..+...
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=204.76 Aligned_cols=103 Identities=25% Similarity=0.526 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhh
Q 015200 101 MQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNA 180 (411)
Q Consensus 101 ~~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na 180 (411)
...+...|..||..|+.++.++||..||++.. +||||++|++||||+||++||+++. |.++.+|.+||+|||.||
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~---Y~s~~~f~~D~~li~~Na 119 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNS 119 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCC---cCCHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999987 9999999999999999999999999 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 181 MKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 181 ~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
++||+++|+++.+|..|...|++.|..+
T Consensus 120 ~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 120 ATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999888665
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=195.99 Aligned_cols=99 Identities=26% Similarity=0.502 Sum_probs=90.6
Q ss_pred HHHHHHH-HHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCC
Q 015200 107 QFAAIFR-QITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYND 185 (411)
Q Consensus 107 ~c~~il~-~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 185 (411)
.|..++. .|+.++.+|||..||+... +||||++|++||||+||++||.++. |.++.+|.+||+|||.||++||+
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~---Y~s~~~f~~D~~Li~~Na~~yN~ 247 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNG 247 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444443 4778999999999999887 9999999999999999999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCc
Q 015200 186 ERDDVHVMAKSLLEKFEEKWLQLLP 210 (411)
Q Consensus 186 ~~s~v~~~A~~L~~~Fe~~~~~~~~ 210 (411)
++|.||.+|..|+..|+..|..+..
T Consensus 248 ~~s~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 248 PESQYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987744
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.86 E-value=1.9e-22 Score=199.43 Aligned_cols=91 Identities=30% Similarity=0.497 Sum_probs=85.5
Q ss_pred cCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHH
Q 015200 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (411)
Q Consensus 117 ~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~ 196 (411)
.|+.+|||+.||++.. +||||+||++||||+||++||.++. |.++.+|.+||+|||.||++||+++|.||.+|..
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 251 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 251 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3678999999999987 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-Cccc
Q 015200 197 LLEKFEEKWLQL-LPKV 212 (411)
Q Consensus 197 L~~~Fe~~~~~~-~~~~ 212 (411)
|+..|++.|.+. +|.+
T Consensus 252 L~~~f~~~~~~~~~p~~ 268 (311)
T 2r0y_A 252 LTNYFNYLIQKEFFPEL 268 (311)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 999999999874 4433
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=3.3e-22 Score=201.43 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=83.8
Q ss_pred cCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhhhcCCCCCHHHHHHHH
Q 015200 117 QHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKS 196 (411)
Q Consensus 117 ~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~ 196 (411)
.|+.+|||+.||+... +||||+||++||||+||++||.++. |.++++|.+||+|||.||++||+++|.||.+|..
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~---Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~ 301 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 301 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTC---CCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3678999999999987 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 015200 197 LLEKFEEKWLQL 208 (411)
Q Consensus 197 L~~~Fe~~~~~~ 208 (411)
|+..|+..|...
T Consensus 302 L~~~f~~~~~~~ 313 (361)
T 2r10_A 302 LTNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.81 E-value=1.6e-20 Score=189.19 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCC-CHHHHHHHHhchhhh
Q 015200 103 ELKRQFAAIFRQITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKN 179 (411)
Q Consensus 103 el~~~c~~il~~l~~~--~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~-s~~eF~~Dv~LIf~N 179 (411)
.+...|..+|..+.+. ..++||+.||+... +||||+||++||||+||++|| +. |. ++++|.+||+|||.|
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~---y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CC---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hc---cCCCHHHHHHHHHHHHHH
Confidence 3445788888888664 46899999999888 999999999999999999998 34 55 899999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 180 AMKYNDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 180 a~~YN~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
|++||+++|.||.+|..|++.|++.|.+.
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.80 E-value=3.4e-20 Score=183.32 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcC--CCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCC-CHHHHHHHHhchhhhhhhc
Q 015200 107 QFAAIFRQITQH--KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYR-NVREIYADVRLVFKNAMKY 183 (411)
Q Consensus 107 ~c~~il~~l~~~--~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~-s~~eF~~Dv~LIf~Na~~Y 183 (411)
.|..+|..+.+. ..++||+.||+... +||||+||++||||+||++|| +. |. ++++|.+||+|||.||++|
T Consensus 32 ~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~---y~~s~~~f~~D~~li~~Na~~y 104 (311)
T 2r0y_A 32 FISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YE---YEDGPSNFLLDVELLTKNCQAY 104 (311)
T ss_dssp HHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CC---STTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hc---ccCCHHHHHHHHHHHHHHHHHc
Confidence 444455555542 47999999999888 999999999999999999999 44 55 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 015200 184 NDERDDVHVMAKSLLEKFEEKWLQL 208 (411)
Q Consensus 184 N~~~s~v~~~A~~L~~~Fe~~~~~~ 208 (411)
|+++|.||.+|..|++.|++.|.+.
T Consensus 105 N~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 105 NEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999775
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=147.02 Aligned_cols=98 Identities=15% Similarity=0.274 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhch
Q 015200 103 ELKRQFAAIFRQITQHK------WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLV 176 (411)
Q Consensus 103 el~~~c~~il~~l~~~~------~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LI 176 (411)
.+...+..|+..++.+. .+.+|+..|+.. |+||. +.||+|.+|++||..+. |.++++|..||.||
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~---Y~sld~f~~D~~lm 77 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNR---YRRLDLFQEHMFEV 77 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Confidence 45567888999999874 689999998876 68998 99999999999999999 99999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 015200 177 FKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLL 209 (411)
Q Consensus 177 f~Na~~YN~~~s~v~~~A~~L~~~Fe~~~~~~~ 209 (411)
|.||++||.+||+||.+|..|+.+|.+.+..+.
T Consensus 78 f~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~ 110 (147)
T 3iu6_A 78 LERARRMNRTDSEIYEDAVELQQFFIKIRDELC 110 (147)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987764
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=4.1e-18 Score=139.19 Aligned_cols=73 Identities=26% Similarity=0.507 Sum_probs=69.5
Q ss_pred hhcccCCHHHHHHHHHHhccCChHhHHHHHHHHHhhCCCCC-CCCCeEEEeccCCChHHHHHhccccccccccccchhhh
Q 015200 265 QKCRKMSTEEKKNLGTALTRLSPEDLCKALEIVAENNPSFH-ATAQEVDLDMDAQVHILCWIRLSSDIVCPFFHFLSSYS 343 (411)
Q Consensus 265 ~~~r~mT~eEK~~L~~~I~~L~~e~L~~Vi~II~~~~P~~~-~~~dEIElDId~L~~~TL~~~L~~~~~~~~~~~~~~~~ 343 (411)
+.+++||++||++|+.+|+.||+++|.+||+||++++|++. .+++|||||||.|++.||| +| +
T Consensus 13 ~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~-~L---------------~ 76 (90)
T 2jns_A 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLR-EL---------------E 76 (90)
T ss_dssp SSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHH-HH---------------H
T ss_pred CCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHH-HH---------------H
Confidence 46899999999999999999999999999999999999987 6899999999999999999 99 9
Q ss_pred HHHHHHHHhc
Q 015200 344 VFVQESLKAA 353 (411)
Q Consensus 344 ~yV~~~l~~~ 353 (411)
+||.+||+.+
T Consensus 77 ~yV~~~l~~k 86 (90)
T 2jns_A 77 RYVTSCLRKK 86 (90)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.56 E-value=3.3e-15 Score=136.89 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCChhhhcCCCCChHHHHHHhcCCCCCCCCCHHHHHHHHhchhhhhh
Q 015200 102 QELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAM 181 (411)
Q Consensus 102 ~el~~~c~~il~~l~~~~~a~pF~~PVd~~~l~~PdYy~iIk~PMDL~tIk~KL~~~~~~~Y~s~~eF~~Dv~LIf~Na~ 181 (411)
.++.+.+..||..|..++.++||+.+. ++.||||+||++||+.+. |.++.+|.+||.|||.||.
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y~-------------~k~PmDL~~i~kKl~~~~---Y~s~~eF~~Dv~lIf~n~~ 137 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRYR-------------QQQPLDLEGVKRKMDQGN---YTSVLEFSDDIVKIIQAAI 137 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTCC-------------C--CCSHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhhh-------------hcCCccHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHh
Confidence 466778999999999999999997732 599999999999999999 9999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHhhCccchHH
Q 015200 182 KYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 215 (411)
Q Consensus 182 ~YN~~~s~v~~~A~~L~~~Fe~~~~~~~~~~~~~ 215 (411)
.||.+.+.+..++..|+.+|++.+..++|+....
T Consensus 138 ~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~ 171 (183)
T 3lqh_A 138 NSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVK 171 (183)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGG
T ss_pred hccCCChhhhhhhhHHHHHHHHHHHHHCCCCCcc
Confidence 9999999999999999999999999999987543
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=94.89 E-value=0.023 Score=48.03 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=50.2
Q ss_pred ccCCHHHHHHHHHHhccCC-hHhHHHHHHHHHhhCCCCCCCCCeEEEeccCCChHHHHHhc
Q 015200 268 RKMSTEEKKNLGTALTRLS-PEDLCKALEIVAENNPSFHATAQEVDLDMDAQVHILCWIRL 327 (411)
Q Consensus 268 r~mT~eEK~~L~~~I~~L~-~e~L~~Vi~II~~~~P~~~~~~dEIElDId~L~~~TL~~~L 327 (411)
.+--.+|-+.|...|..|. .+.|.+||++|.+. ..+...+..+++|+.+||..|++ +|
T Consensus 57 ~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~-kl 115 (125)
T 2lm0_A 57 DKAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVR-KL 115 (125)
T ss_dssp SCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHH-HH
Confidence 3345689999999999994 67899999999985 35668889999999999999999 99
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.17 E-value=32 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=27.9
Q ss_pred ChhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 22 DTVEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
+.++++.++...+++..+++.|.+++.+...
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999988765
No 46
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=38.95 E-value=39 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.098 Sum_probs=23.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKLNDVE 51 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~~ev~ 51 (411)
..+++|-.+|+++.++|++|...|..+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999776554
No 47
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.25 E-value=67 Score=22.55 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=26.1
Q ss_pred ChhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015200 22 DTVEVEGLNKTIDDILQKVTQLEQKLNDVEQ 52 (411)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~le~~~~ev~~ 52 (411)
+.-.+..|++--+.+..+|..||..+.++++
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQ 32 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQ 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 3456778899999999999999999988886
No 48
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=22.11 E-value=1e+02 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=18.6
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHH
Q 015200 24 VEVEGLNKTIDDILQKVTQLEQKL 47 (411)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~le~~~ 47 (411)
..++.|.++++.+..++.+||.++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888888888888888765
Done!