BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015201
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 244/341 (71%), Gaps = 1/341 (0%)
Query: 56 PLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEA 115
PLL+ A +G V RPP W+MRQAGRYM Y+ L EK+P FR+RSE DL+V+ISLQPW+
Sbjct: 13 PLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKV 72
Query: 116 FHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGD 174
F PDGVI+FSDILTPL +PFDI + +GPVI P+R+ ++ + EK + +VG+
Sbjct: 73 FRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGE 132
Query: 175 SLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLT 234
+L ILRKEV AAVLGFVGAP+T+A+Y+VEGG+++ +T IK + P VL LL
Sbjct: 133 ALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKFA 192
Query: 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294
++A YI YQ +SGA +QIFDSW +L P +E++S PY+++IV V+ P P++LY
Sbjct: 193 TSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILY 252
Query: 295 INGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEI 354
+G+GG LER+ TGVDV+ LDWTVDMADGR+RLG ++++QGNVDP LF +T+ I
Sbjct: 253 ASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRI 312
Query: 355 QRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
VK AG HILNLGHG+ VGTPEE AHFFE+ K ++Y
Sbjct: 313 NDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Shigella Flexineri: New Insights Into Its Catalytic
Mechanism
Length = 354
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 191/335 (57%), Gaps = 4/335 (1%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ Y+ + F + +L +++LQP +
Sbjct: 10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ E GP SP+ + + L D E +L +V ++++
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+R E+ ++GF G+PWT+ATY+VEGG+++ +T IK M + P L LL L +++
Sbjct: 130 TIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS--LVRTKCPETPIVLYI 295
Y+ Q+++GA + IFD+WGG L ++Q+S Y+ +IV L P+ L+
Sbjct: 190 TLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G G +LE M TG D +GLDWT D+AD R+R+GN +++QGN+DP+ L++P + +E+
Sbjct: 250 KGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVA 309
Query: 356 RVVKCAG-SRGHILNLGHGVLVGTPEEAVAHFFEV 389
++ G GH+ NLGHG+ P E F E
Sbjct: 310 TILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEA 344
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 9/340 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++A P P W+MRQAGRY+ Y + SF ++ D +++LQP E F
Sbjct: 14 FLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFP 73
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL-EKLQFVGDSL 176
D I+FSDILT A G+ D GP P+R+E + L D+ L +V D++
Sbjct: 74 LDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAV 133
Query: 177 KILRK-----EVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLS 231
+ +R+ E + ++GF G+PWT+A Y+VEGG + + T+KSM + P ++ +L
Sbjct: 134 REIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILD 193
Query: 232 HLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK--CPET 289
QA+A Y+ Q+E+GA + IFD+WGG L ++++S YIR +V+ ++ +
Sbjct: 194 VNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARV 253
Query: 290 PIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPA 349
P + + G G +LE + TGVD +GLDWTV++ R+R+ +++QGN+DP LF+P A
Sbjct: 254 PAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEA 313
Query: 350 LTDEIQRVVKCAGSR-GHILNLGHGVLVGTPEEAVAHFFE 388
+ E + V+ G+ GH+ NLGHG+ TP E VA +
Sbjct: 314 IRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVD 353
>pdb|3GW3|A Chain A, Human Urod Mutant K297n
Length = 367
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 177/339 (52%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +GN +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGNTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|C Chain C, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
pdb|2INF|D Chain D, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Bacillus Subtilis
Length = 359
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 183/344 (53%), Gaps = 13/344 (3%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
+KAA+G P W MRQAGR YRKL EK+ F E + +L ++ P E +
Sbjct: 17 FLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLF-EITHQPELCAYVTRLPVEQYG 75
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSL 176
D I++ DI+TPLP+ GV +I+ GPVI PIRS ++ L ID E+ + +V +++
Sbjct: 76 VDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETI 135
Query: 177 KILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA 236
K+L E + ++GF GAP+T+A+Y+ EGG ++ Y K+ ++ P L+S L
Sbjct: 136 KLLVNE-QLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADM 194
Query: 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296
I Y+ Q+++GA IQIFDSW G L + + +P + I S + + P++++
Sbjct: 195 IIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE--NVPLIMFGV 252
Query: 297 GNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQR 356
G +DV+GLDW + + + R + G +VQGN+DP+ L +P + + +
Sbjct: 253 GASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKE 311
Query: 357 VV-KCAGSRGHILNLGHGVLVGTPEE------AVAHFFEVGKSM 393
++ + S G I NLGHGV E A H + K M
Sbjct: 312 ILDQGMESDGFIFNLGHGVFPDVSPEVLKKLTAFVHEYSQNKKM 355
>pdb|3GW0|A Chain A, Urod Mutant G318r
Length = 367
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 RQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase
pdb|1R3Q|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-I
pdb|1R3Y|A Chain A, Uroporphyrinogen Decarboxylase In Complex With
Coproporphyrinogen-Iii
pdb|3GVQ|A Chain A, Urod Single-Chain Dimer
pdb|3GVR|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
Length = 367
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation
pdb|3GVW|A Chain A, Single-Chain Urod F217y (Yf) Mutation
Length = 367
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+++S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLYESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 175/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 98
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 99 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 158
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 159 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 218
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 219 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 278
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++ + LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 279 MITFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 338
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 339 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 175/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 98
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 99 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 158
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 159 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 218
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ + + PYIR++ V+ + E P
Sbjct: 219 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKLALPYIRDVAKQVKARLREAGLAPVP 278
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 279 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 338
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 339 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex
With Coproporphyrinogen-Iii
Length = 367
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ T++VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTFMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n
Length = 367
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFS+IL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSNILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In
Complex With Coproporphyrinogen-I
Length = 367
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFS+IL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSEILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 175/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 40 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 98
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 99 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 158
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF APWT+ TY+VEGG + T K + P LL LT
Sbjct: 159 ITLTRQRLAGRVPLIGFADAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 218
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 219 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 278
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 279 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 338
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 339 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 377
>pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-I
pdb|1R3T|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In
Complex With Coproporphyrinogen-Iii
Length = 367
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 175/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFS IL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 78 LDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL LT
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 356
>pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme
In Complex With Coproporphyrinogen-Iii
pdb|2Q6Z|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Apo-
Enzyme
Length = 356
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 175/339 (51%), Gaps = 8/339 (2%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
++AA G P W MRQAGRY+ +R+ F + + +++LQP F
Sbjct: 9 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 67
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFVGDS 175
D IIFSDIL A G+ + +GP P+R E+ L+ L ++ +L +V +
Sbjct: 68 LDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 127
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+ + R+ + ++GF GAPWT+ TY+VE G + T K + P LL LT
Sbjct: 128 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVERGGSSTMAQAKRWLYQRPQASHQLLRILTD 187
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-----P 290
A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E P
Sbjct: 188 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 247
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++ +
Sbjct: 248 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 307
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
+++++ G +I NLGHG+ E V F +
Sbjct: 308 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDA 346
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
pdb|2EJA|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
Length = 338
Score = 187 bits (475), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 182/338 (53%), Gaps = 9/338 (2%)
Query: 57 LLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAF 116
LL+++ +G P+ R P W+MRQAGRYM YRK+ + +F E + DL +ISL P +
Sbjct: 6 LLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLKIL 65
Query: 117 HPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSL 176
D +IIFSDIL PL GV + E GP + + + L D + +V + +
Sbjct: 66 GVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSGKVSD----LKKYDPSQNAYVYEII 121
Query: 177 KILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA 236
K + KE + V+GF GAP+T+ +Y++EGG ++ + + K P + L+ LT+
Sbjct: 122 KRV-KEAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILTET 180
Query: 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296
+ Y+ Q+++GA +QIFDSW L + ++ PY+ ++S ++ +TP++ +
Sbjct: 181 VLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKD-FSDTPVIYFFR 239
Query: 297 GNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQR 356
G+ F++ D + +DW+VD+ + K D QGN++PA L++ + ++
Sbjct: 240 GSSSFIDLAVDYRADALSVDWSVDIPELFKIY--DKGFQGNLEPAVLYASEEVIEEKTLG 297
Query: 357 VVKCAGSRG-HILNLGHGVLVGTPEEAVAHFFEVGKSM 393
+++ + ++ NLGHG+ E V + ++ KS
Sbjct: 298 LLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei
pdb|4AY7|B Chain B, Methyltransferase From Methanosarcina Mazei
Length = 348
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 18/221 (8%)
Query: 168 KLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLR 227
++ V +++KI+R++VG ++G + P T+A+ +V + ++ K+ +L
Sbjct: 129 RIPVVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIKKT------DLLE 182
Query: 228 TLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQ--LPPHMWEQWSEPYIREIVSLVRTK 285
L T+A Y VE+GA I I D + P + Q+ + +++ S V +
Sbjct: 183 QALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSV 242
Query: 286 CPETPIVLYINGN-GGFLERMKGTGVDVIGLDWTVDMA-DGRKRLGNDISVQGNVDPACL 343
VL+I GN L M G + + ++ + A G++ +G + GNV +
Sbjct: 243 T-----VLHICGNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNV--SSP 295
Query: 344 FSPLPALTDEIQRVVKCAGSRG-HILNLGHGVLVGTPEEAV 383
F+ LP D+I+ K A G +L G G+ TP E V
Sbjct: 296 FTLLPGPVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENV 336
>pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei
pdb|4AY8|B Chain B, Semet-Derivative Of A Methyltransferase From M. Mazei
Length = 348
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 18/221 (8%)
Query: 168 KLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLR 227
++ V +++KI+R++VG ++G P T+A+ +V + ++ K+ +L
Sbjct: 129 RIPVVLEAIKIIREKVGPDVPIVGGXEGPVTVASDLVSVKSFXKWSIKKT------DLLE 182
Query: 228 TLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQ--LPPHMWEQWSEPYIREIVSLVRTK 285
L T+A Y VE+GA I I D P + Q+ + +++ S V +
Sbjct: 183 QALDIATEASIIYANAXVEAGADVIAIADPVASPDLXSPDSFRQFLKSRLQKFASSVNSV 242
Query: 286 CPETPIVLYINGN-GGFLERMKGTGVDVIGLDWTVDMA-DGRKRLGNDISVQGNVDPACL 343
VL+I GN L G + + ++ + A G++ +G + GNV +
Sbjct: 243 T-----VLHICGNVNPILSDXADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNV--SSP 295
Query: 344 FSPLPALTDEIQRVVKCAGSRG-HILNLGHGVLVGTPEEAV 383
F+ LP D+I+ K A G +L G G+ TP E V
Sbjct: 296 FTLLPGPVDKIKAEAKEALEGGIDVLAPGCGIAPXTPLENV 336
>pdb|3NXQ|A Chain A, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
pdb|3NXQ|B Chain B, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
Length = 629
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWG---GQLPPHMWEQWSEPYIREIVSLVRT 284
+H T A+ Q E+ + ++WG +L +W+Q+++P +R I+ VRT
Sbjct: 41 AHDTNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRT 97
>pdb|2XYD|A Chain A, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
pdb|2XYD|B Chain B, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
Length = 610
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWG---GQLPPHMWEQWSEPYIREIVSLVRT 284
+H T A+ Q E+ + ++WG +L +W+Q+++P +R I+ VRT
Sbjct: 41 AHDTNITAENARRQEEAALLSQEFAEAWGQKAKELYEPIWQQFTDPQLRRIIGAVRT 97
>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
Length = 491
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 277 EIVSLVRTKCPETPIVLY----INGNGGFLERMK 306
++ ++RT PETP++L+ G GG E +K
Sbjct: 162 DVYRIIRTYAPETPVLLFSYAVFGGKGGAAEALK 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,366,987
Number of Sequences: 62578
Number of extensions: 542347
Number of successful extensions: 1241
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 25
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)