Query 015201
Match_columns 411
No_of_seqs 184 out of 1370
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02433 uroporphyrinogen deca 100.0 3.8E-74 8.2E-79 569.3 38.8 344 58-401 1-345 (345)
2 PRK00115 hemE uroporphyrinogen 100.0 5.5E-74 1.2E-78 568.8 39.9 342 52-394 2-345 (346)
3 COG0407 HemE Uroporphyrinogen- 100.0 1.6E-71 3.4E-76 540.4 36.4 343 53-396 5-351 (352)
4 TIGR01464 hemE uroporphyrinoge 100.0 9.5E-71 2.1E-75 544.5 37.8 335 57-392 1-338 (338)
5 cd00717 URO-D Uroporphyrinogen 100.0 1.7E-69 3.6E-74 535.1 37.6 331 60-392 2-335 (335)
6 KOG2872 Uroporphyrinogen decar 100.0 1.1E-70 2.4E-75 503.0 25.4 345 50-395 7-358 (359)
7 PF01208 URO-D: Uroporphyrinog 100.0 5.5E-68 1.2E-72 526.0 31.9 332 53-393 1-343 (343)
8 PRK06252 methylcobalamin:coenz 100.0 2.5E-65 5.4E-70 506.2 34.3 328 52-396 3-339 (339)
9 cd03307 Mta_CmuA_like MtaA_Cmu 100.0 4E-65 8.8E-70 501.9 33.6 317 59-392 1-326 (326)
10 TIGR01463 mtaA_cmuA methyltran 100.0 6.7E-65 1.5E-69 503.2 34.8 319 53-395 4-340 (340)
11 cd03465 URO-D_like The URO-D _ 100.0 4.8E-61 1E-65 473.8 34.9 318 60-392 2-330 (330)
12 cd03308 CmuA_CmuC_like CmuA_Cm 100.0 2.7E-57 5.8E-62 453.5 30.8 323 54-392 5-378 (378)
13 cd00465 URO-D_CIMS_like The UR 100.0 2.8E-47 6.1E-52 371.9 29.1 297 71-392 1-306 (306)
14 cd03309 CmuC_like CmuC_like. P 100.0 6.5E-39 1.4E-43 312.8 27.6 231 152-389 75-318 (321)
15 PRK04326 methionine synthase; 99.9 6.6E-23 1.4E-27 202.3 17.8 254 106-395 48-324 (330)
16 PRK00957 methionine synthase; 99.8 1.2E-18 2.7E-23 170.0 19.6 188 185-393 106-304 (305)
17 cd03311 CIMS_C_terminal_like C 99.7 1.4E-15 3E-20 150.3 14.1 192 187-391 119-331 (332)
18 cd03310 CIMS_like CIMS - Cobal 99.5 1.3E-12 2.9E-17 128.4 17.6 192 173-385 102-310 (321)
19 PRK01207 methionine synthase; 99.3 2.3E-10 5E-15 112.1 19.1 197 174-394 108-340 (343)
20 PRK08575 5-methyltetrahydropte 99.2 1.5E-09 3.2E-14 107.0 18.2 182 188-393 129-322 (326)
21 PRK09121 5-methyltetrahydropte 99.1 1.9E-09 4E-14 106.7 17.4 197 174-394 112-335 (339)
22 PRK06052 5-methyltetrahydropte 99.1 9.3E-09 2E-13 99.5 19.7 208 170-395 94-342 (344)
23 PRK06233 hypothetical protein; 99.1 4E-09 8.6E-14 105.7 16.7 210 173-393 120-370 (372)
24 PRK06520 5-methyltetrahydropte 99.0 1.1E-08 2.4E-13 102.4 16.6 207 174-392 120-366 (368)
25 PRK05222 5-methyltetrahydropte 99.0 1.9E-08 4.1E-13 109.1 17.7 200 174-394 537-753 (758)
26 PLN02475 5-methyltetrahydropte 99.0 3.9E-08 8.5E-13 106.3 19.3 191 187-395 553-760 (766)
27 cd03312 CIMS_N_terminal_like C 98.9 7.5E-08 1.6E-12 96.1 18.5 187 172-381 136-333 (360)
28 PF01717 Meth_synt_2: Cobalami 98.9 3.2E-08 6.9E-13 97.6 15.2 189 188-392 122-324 (324)
29 TIGR01371 met_syn_B12ind 5-met 98.8 1.2E-07 2.7E-12 102.7 18.7 193 186-394 541-748 (750)
30 COG0620 MetE Methionine syntha 98.8 1.4E-07 3E-12 92.7 15.8 190 187-394 125-328 (330)
31 TIGR01371 met_syn_B12ind 5-met 98.7 8.2E-07 1.8E-11 96.4 18.9 186 172-381 132-328 (750)
32 PLN02475 5-methyltetrahydropte 98.7 1.3E-06 2.9E-11 94.6 19.0 173 193-381 155-341 (766)
33 PRK05222 5-methyltetrahydropte 98.6 4.3E-06 9.4E-11 91.0 20.3 180 171-374 137-324 (758)
34 PF08267 Meth_synt_1: Cobalami 96.9 0.02 4.3E-07 56.0 13.7 165 171-359 135-308 (310)
35 KOG2263 Methionine synthase II 96.8 0.0069 1.5E-07 61.0 9.3 190 187-394 553-759 (765)
36 cd07940 DRE_TIM_IPMS 2-isoprop 95.9 0.33 7.2E-06 46.5 15.4 141 234-393 19-184 (268)
37 cd07948 DRE_TIM_HCS Saccharomy 95.5 0.45 9.7E-06 45.5 14.5 141 234-393 21-182 (262)
38 TIGR02660 nifV_homocitr homoci 95.5 0.5 1.1E-05 47.4 15.4 70 234-315 22-91 (365)
39 cd00951 KDGDH 5-dehydro-4-deox 95.4 0.5 1.1E-05 45.8 14.6 73 236-315 22-100 (289)
40 cd07939 DRE_TIM_NifV Streptomy 95.4 0.64 1.4E-05 44.2 15.1 141 234-393 19-180 (259)
41 COG0646 MetH Methionine syntha 95.1 1.4 3.1E-05 42.3 16.0 148 230-391 138-310 (311)
42 TIGR01496 DHPS dihydropteroate 95.1 1.6 3.4E-05 41.7 16.5 151 235-393 23-192 (257)
43 PRK11858 aksA trans-homoaconit 95.0 0.77 1.7E-05 46.3 14.9 70 234-315 25-94 (378)
44 PRK03170 dihydrodipicolinate s 94.8 0.79 1.7E-05 44.4 14.1 74 235-315 22-102 (292)
45 COG5016 Pyruvate/oxaloacetate 94.8 0.3 6.4E-06 48.8 10.8 111 235-361 156-279 (472)
46 PRK05692 hydroxymethylglutaryl 94.7 0.66 1.4E-05 45.0 13.1 145 234-392 25-195 (287)
47 PLN02746 hydroxymethylglutaryl 94.7 0.72 1.6E-05 45.9 13.5 74 234-315 67-140 (347)
48 TIGR00674 dapA dihydrodipicoli 94.7 0.71 1.5E-05 44.6 13.4 74 235-315 19-99 (285)
49 PRK03620 5-dehydro-4-deoxygluc 94.4 1.3 2.7E-05 43.3 14.5 72 237-315 30-107 (303)
50 TIGR02090 LEU1_arch isopropylm 94.4 1.2 2.6E-05 44.7 14.4 141 234-393 21-182 (363)
51 cd00958 DhnA Class I fructose- 94.3 1.9 4.1E-05 40.2 15.0 138 240-390 81-234 (235)
52 PRK07226 fructose-bisphosphate 94.3 1.7 3.7E-05 41.6 14.8 139 241-393 99-254 (267)
53 cd00739 DHPS DHPS subgroup of 94.2 4.2 9.2E-05 38.7 17.1 141 235-383 24-185 (257)
54 TIGR00683 nanA N-acetylneurami 93.3 1.3 2.9E-05 42.9 12.3 74 235-315 21-102 (290)
55 PRK11613 folP dihydropteroate 93.3 7 0.00015 37.8 16.9 154 235-396 38-213 (282)
56 cd00950 DHDPS Dihydrodipicolin 93.0 2.3 4.9E-05 41.0 13.3 74 235-315 21-101 (284)
57 TIGR01949 AroFGH_arch predicte 92.9 4.1 8.9E-05 38.7 14.8 139 240-392 95-249 (258)
58 COG0159 TrpA Tryptophan syntha 92.8 2 4.3E-05 40.9 12.1 153 235-400 31-210 (265)
59 PF03437 BtpA: BtpA family; I 92.7 5 0.00011 38.1 14.7 153 230-390 24-199 (254)
60 cd00408 DHDPS-like Dihydrodipi 92.7 2.5 5.5E-05 40.5 13.2 74 235-315 18-98 (281)
61 cd07938 DRE_TIM_HMGL 3-hydroxy 92.7 2.1 4.7E-05 41.1 12.5 146 234-393 19-190 (274)
62 TIGR00433 bioB biotin syntheta 92.7 4.8 0.0001 38.8 15.2 71 238-316 68-140 (296)
63 cd00423 Pterin_binding Pterin 92.6 9.6 0.00021 36.2 17.1 150 235-393 24-194 (258)
64 PF00682 HMGL-like: HMGL-like 92.6 2.4 5.3E-05 39.5 12.5 142 234-394 13-179 (237)
65 TIGR00674 dapA dihydrodipicoli 92.5 6.4 0.00014 37.9 15.6 97 235-341 80-187 (285)
66 COG2089 SpsE Sialic acid synth 92.4 5.9 0.00013 38.7 14.8 145 238-394 33-206 (347)
67 PRK00915 2-isopropylmalate syn 92.4 3.1 6.8E-05 43.7 14.3 70 234-315 25-98 (513)
68 PRK12330 oxaloacetate decarbox 92.3 3.5 7.5E-05 43.1 14.2 71 235-314 155-230 (499)
69 COG3589 Uncharacterized conser 92.3 3.1 6.7E-05 40.8 12.7 145 235-396 16-172 (360)
70 COG0329 DapA Dihydrodipicolina 92.3 2.9 6.4E-05 40.7 13.0 74 235-315 25-105 (299)
71 PRK04147 N-acetylneuraminate l 92.2 3.4 7.4E-05 40.0 13.5 74 235-315 24-105 (293)
72 TIGR03249 KdgD 5-dehydro-4-deo 92.2 6.2 0.00013 38.3 15.3 71 237-314 28-104 (296)
73 PRK01222 N-(5'-phosphoribosyl) 92.2 5.2 0.00011 36.9 14.0 148 239-393 14-208 (210)
74 PRK07094 biotin synthase; Prov 92.2 8.2 0.00018 37.8 16.4 66 241-316 79-146 (323)
75 PRK09427 bifunctional indole-3 91.9 11 0.00024 39.0 17.2 204 169-393 193-454 (454)
76 cd00954 NAL N-Acetylneuraminic 91.9 4.7 0.0001 38.9 14.0 73 235-314 21-101 (288)
77 cd00952 CHBPH_aldolase Trans-o 91.9 3.4 7.3E-05 40.5 13.0 73 236-315 30-109 (309)
78 COG0434 SgcQ Predicted TIM-bar 91.8 9 0.0002 35.8 14.6 152 230-390 29-204 (263)
79 PRK07535 methyltetrahydrofolat 91.3 14 0.0003 35.3 17.5 136 227-373 17-164 (261)
80 PRK09389 (R)-citramalate synth 91.3 5.6 0.00012 41.6 14.6 70 234-315 23-92 (488)
81 cd03174 DRE_TIM_metallolyase D 91.2 2.7 5.8E-05 39.7 11.3 150 234-395 18-189 (265)
82 TIGR02313 HpaI-NOT-DapA 2,4-di 90.9 8.1 0.00018 37.5 14.5 72 237-315 23-101 (294)
83 PRK05692 hydroxymethylglutaryl 90.7 1.7 3.6E-05 42.2 9.5 72 235-315 155-230 (287)
84 PF00682 HMGL-like: HMGL-like 90.7 1.8 3.8E-05 40.5 9.4 70 237-315 139-212 (237)
85 cd02933 OYE_like_FMN Old yello 90.6 6.7 0.00015 38.9 13.8 113 227-339 144-295 (338)
86 PRK13753 dihydropteroate synth 90.5 17 0.00038 35.0 16.1 145 235-387 25-192 (279)
87 cd00950 DHDPS Dihydrodipicolin 90.5 12 0.00027 35.8 15.3 95 237-341 84-189 (284)
88 PRK03170 dihydrodipicolinate s 90.3 14 0.0003 35.7 15.5 97 235-341 83-190 (292)
89 PRK08227 autoinducer 2 aldolas 90.2 16 0.00034 35.0 15.3 138 241-393 100-249 (264)
90 cd07938 DRE_TIM_HMGL 3-hydroxy 90.1 2 4.3E-05 41.3 9.4 72 235-315 149-224 (274)
91 cd07945 DRE_TIM_CMS Leptospira 90.1 14 0.0003 35.7 15.2 72 234-315 18-93 (280)
92 PF07745 Glyco_hydro_53: Glyco 90.1 3.7 8.1E-05 40.6 11.3 134 227-361 102-280 (332)
93 TIGR03471 HpnJ hopanoid biosyn 90.1 12 0.00025 38.9 15.7 57 248-315 245-303 (472)
94 PRK08508 biotin synthase; Prov 89.8 12 0.00026 36.0 14.5 69 240-316 48-119 (279)
95 PRK13397 3-deoxy-7-phosphohept 89.8 11 0.00024 35.7 13.7 143 241-394 35-184 (250)
96 PRK03620 5-dehydro-4-deoxygluc 89.6 12 0.00027 36.4 14.6 92 238-339 91-191 (303)
97 PRK04452 acetyl-CoA decarbonyl 89.6 8.1 0.00018 38.0 13.1 153 223-393 63-232 (319)
98 PRK12331 oxaloacetate decarbox 89.6 2.3 4.9E-05 43.9 9.8 71 235-315 154-228 (448)
99 cd01306 PhnM PhnM is believed 89.5 15 0.00032 36.3 15.1 125 239-373 99-256 (325)
100 PRK06256 biotin synthase; Vali 89.4 21 0.00045 35.1 16.4 70 238-316 97-169 (336)
101 TIGR00973 leuA_bact 2-isopropy 89.3 10 0.00023 39.7 14.6 31 235-268 23-53 (494)
102 PF00701 DHDPS: Dihydrodipicol 89.2 2 4.2E-05 41.5 8.6 73 235-314 22-101 (289)
103 PLN02417 dihydrodipicolinate s 89.2 5.4 0.00012 38.4 11.6 73 236-315 23-102 (280)
104 PRK12595 bifunctional 3-deoxy- 89.0 11 0.00024 37.7 14.0 148 237-395 134-288 (360)
105 cd07945 DRE_TIM_CMS Leptospira 88.8 2.9 6.4E-05 40.3 9.5 70 236-314 148-221 (280)
106 COG0135 TrpF Phosphoribosylant 88.6 17 0.00037 33.5 13.7 121 245-393 72-208 (208)
107 PRK14041 oxaloacetate decarbox 88.5 2.6 5.6E-05 43.7 9.3 70 235-314 153-226 (467)
108 PLN03228 methylthioalkylmalate 88.4 19 0.00041 37.8 15.6 32 235-269 106-137 (503)
109 cd03174 DRE_TIM_metallolyase D 88.3 3.2 6.9E-05 39.2 9.3 69 237-314 148-220 (265)
110 cd07943 DRE_TIM_HOA 4-hydroxy- 88.1 3.4 7.5E-05 39.3 9.4 71 235-314 141-215 (263)
111 PRK07028 bifunctional hexulose 88.1 11 0.00024 38.7 13.7 133 240-399 73-219 (430)
112 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.1 15 0.00032 35.3 13.8 144 235-393 21-190 (275)
113 PRK12581 oxaloacetate decarbox 88.0 3.1 6.6E-05 43.1 9.4 71 234-314 162-236 (468)
114 TIGR00259 thylakoid_BtpA membr 87.9 20 0.00043 34.2 14.1 133 230-369 23-178 (257)
115 KOG2263 Methionine synthase II 87.9 8.5 0.00018 39.5 12.0 144 227-375 179-332 (765)
116 TIGR01108 oadA oxaloacetate de 87.6 3.1 6.7E-05 44.4 9.5 70 235-314 149-222 (582)
117 PRK09282 pyruvate carboxylase 87.6 2.9 6.4E-05 44.7 9.3 70 235-314 154-227 (592)
118 PRK08883 ribulose-phosphate 3- 87.6 13 0.00028 34.5 12.6 126 239-392 72-217 (220)
119 cd07941 DRE_TIM_LeuA3 Desulfob 87.4 4.2 9.2E-05 39.0 9.6 71 235-314 151-225 (273)
120 cd07940 DRE_TIM_IPMS 2-isoprop 87.4 3.7 8E-05 39.3 9.1 70 236-314 144-219 (268)
121 TIGR00381 cdhD CO dehydrogenas 87.3 18 0.00038 36.4 13.8 153 223-392 127-300 (389)
122 TIGR03569 NeuB_NnaB N-acetylne 87.1 17 0.00037 35.9 13.7 150 235-394 16-194 (329)
123 PF00809 Pterin_bind: Pterin b 87.0 24 0.00053 32.3 16.4 146 241-393 25-191 (210)
124 cd00945 Aldolase_Class_I Class 86.9 11 0.00023 33.5 11.6 133 236-391 14-170 (201)
125 PRK14042 pyruvate carboxylase 86.8 3.5 7.5E-05 44.1 9.3 70 235-314 154-227 (596)
126 COG1856 Uncharacterized homolo 86.7 13 0.00027 34.6 11.5 81 239-329 46-130 (275)
127 PF02581 TMP-TENI: Thiamine mo 86.7 12 0.00025 33.5 11.5 85 236-334 13-98 (180)
128 cd00945 Aldolase_Class_I Class 86.7 6.6 0.00014 34.9 10.0 101 234-339 64-182 (201)
129 PRK14041 oxaloacetate decarbox 86.6 26 0.00056 36.4 15.3 145 234-393 24-194 (467)
130 cd04724 Tryptophan_synthase_al 86.5 20 0.00043 33.7 13.5 80 235-315 14-110 (242)
131 PLN02746 hydroxymethylglutaryl 86.5 4.6 9.9E-05 40.2 9.4 72 235-315 197-272 (347)
132 cd07944 DRE_TIM_HOA_like 4-hyd 86.5 5 0.00011 38.4 9.5 72 235-315 138-214 (266)
133 COG0329 DapA Dihydrodipicolina 86.5 33 0.00072 33.4 18.6 157 173-392 60-227 (299)
134 cd04747 OYE_like_5_FMN Old yel 86.5 16 0.00034 36.7 13.3 110 230-339 139-290 (361)
135 TIGR03586 PseI pseudaminic aci 86.4 35 0.00076 33.7 15.5 149 235-394 17-193 (327)
136 PLN02363 phosphoribosylanthran 86.4 26 0.00057 33.3 14.2 45 346-394 209-255 (256)
137 PRK14040 oxaloacetate decarbox 86.3 3.8 8.3E-05 43.8 9.3 71 234-314 154-228 (593)
138 cd00408 DHDPS-like Dihydrodipi 86.2 28 0.00061 33.2 14.6 95 237-341 81-186 (281)
139 PF03102 NeuB: NeuB family; I 86.0 7.5 0.00016 36.7 10.2 143 241-394 2-172 (241)
140 PRK12999 pyruvate carboxylase; 85.5 13 0.00028 43.1 13.6 71 235-315 691-765 (1146)
141 CHL00200 trpA tryptophan synth 85.5 15 0.00032 35.1 12.1 155 235-398 29-205 (263)
142 PRK09282 pyruvate carboxylase 85.4 24 0.00053 37.8 14.8 142 234-393 25-195 (592)
143 cd07939 DRE_TIM_NifV Streptomy 85.2 5.9 0.00013 37.6 9.3 71 235-315 139-213 (259)
144 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.0 6.2 0.00013 37.9 9.3 70 236-315 150-223 (275)
145 TIGR00693 thiE thiamine-phosph 84.9 29 0.00062 31.1 15.0 78 238-329 16-94 (196)
146 COG1830 FbaB DhnA-type fructos 84.9 37 0.0008 32.4 14.3 138 240-391 102-258 (265)
147 PLN02389 biotin synthase 84.7 37 0.00081 34.3 15.1 130 238-394 122-255 (379)
148 COG0646 MetH Methionine syntha 84.6 41 0.00089 32.7 14.7 153 236-399 54-251 (311)
149 TIGR00262 trpA tryptophan synt 84.4 28 0.00062 33.0 13.4 81 235-315 24-121 (256)
150 PLN02591 tryptophan synthase 83.9 24 0.00052 33.5 12.6 154 235-397 16-191 (250)
151 PRK00164 moaA molybdenum cofac 83.9 17 0.00036 35.7 12.2 60 245-315 62-124 (331)
152 TIGR03128 RuMP_HxlA 3-hexulose 83.6 34 0.00073 30.9 14.0 105 241-371 69-188 (206)
153 TIGR01859 fruc_bis_ald_ fructo 83.6 23 0.00051 34.2 12.6 74 237-318 29-106 (282)
154 TIGR01108 oadA oxaloacetate de 83.5 36 0.00079 36.4 15.1 146 233-393 19-190 (582)
155 TIGR02320 PEP_mutase phosphoen 83.3 8.5 0.00018 37.3 9.4 70 235-316 169-240 (285)
156 PRK12330 oxaloacetate decarbox 83.0 56 0.0012 34.3 15.8 139 234-393 26-196 (499)
157 cd02803 OYE_like_FMN_family Ol 82.9 33 0.00071 33.5 13.8 87 230-316 136-248 (327)
158 cd00951 KDGDH 5-dehydro-4-deox 82.8 28 0.0006 33.6 13.0 91 238-338 84-183 (289)
159 PRK13111 trpA tryptophan synth 82.3 26 0.00056 33.4 12.2 155 235-397 26-202 (258)
160 PRK10605 N-ethylmaleimide redu 82.1 22 0.00048 35.6 12.3 87 230-316 154-269 (362)
161 PF01729 QRPTase_C: Quinolinat 82.1 6.8 0.00015 34.8 7.7 61 241-316 93-155 (169)
162 cd00530 PTE Phosphotriesterase 81.9 31 0.00067 33.0 13.0 100 272-374 135-247 (293)
163 cd08213 RuBisCO_large_III Ribu 81.8 59 0.0013 33.3 15.1 185 169-408 182-404 (412)
164 PRK13398 3-deoxy-7-phosphohept 81.8 47 0.001 31.8 13.8 123 235-368 41-167 (266)
165 TIGR03217 4OH_2_O_val_ald 4-hy 81.6 9.6 0.00021 37.8 9.3 71 235-314 143-218 (333)
166 cd00377 ICL_PEPM Members of th 81.4 6.7 0.00015 37.0 7.9 66 235-317 160-227 (243)
167 cd00740 MeTr MeTr subgroup of 81.3 50 0.0011 31.3 17.8 136 229-376 20-171 (252)
168 PRK07315 fructose-bisphosphate 81.3 28 0.00062 33.8 12.3 75 237-317 31-107 (293)
169 cd00405 PRAI Phosphoribosylant 81.1 39 0.00085 30.6 12.7 117 245-389 70-202 (203)
170 cd04735 OYE_like_4_FMN Old yel 80.9 34 0.00073 34.1 13.1 86 231-316 140-255 (353)
171 PRK12738 kbaY tagatose-bisphos 80.8 8 0.00017 37.5 8.2 120 218-363 152-280 (286)
172 COG0036 Rpe Pentose-5-phosphat 80.8 31 0.00068 32.0 11.6 54 239-307 75-130 (220)
173 PRK09490 metH B12-dependent me 80.7 39 0.00085 39.4 14.9 94 303-405 171-279 (1229)
174 COG2100 Predicted Fe-S oxidore 80.6 57 0.0012 32.1 13.6 142 218-395 138-285 (414)
175 PRK08195 4-hyroxy-2-oxovalerat 80.5 9.1 0.0002 38.0 8.8 139 235-395 144-302 (337)
176 cd07948 DRE_TIM_HCS Saccharomy 80.4 12 0.00026 35.8 9.2 67 238-314 144-214 (262)
177 PRK11449 putative deoxyribonuc 80.3 25 0.00055 33.4 11.5 112 271-393 112-236 (258)
178 PRK08185 hypothetical protein; 80.3 44 0.00094 32.4 13.1 141 237-390 26-197 (283)
179 TIGR01769 GGGP geranylgeranylg 80.1 36 0.00078 31.3 11.9 144 221-390 5-175 (205)
180 KOG2335 tRNA-dihydrouridine sy 79.9 21 0.00045 35.5 10.7 122 169-314 85-231 (358)
181 PRK02083 imidazole glycerol ph 79.8 35 0.00075 32.2 12.3 140 238-389 33-195 (253)
182 COG2513 PrpB PEP phosphonomuta 79.7 8.4 0.00018 37.1 7.8 69 234-317 165-235 (289)
183 PLN02321 2-isopropylmalate syn 79.7 31 0.00067 37.3 12.9 31 236-269 109-139 (632)
184 PLN02705 beta-amylase 79.6 1.8 4E-05 45.5 3.6 110 238-358 271-396 (681)
185 TIGR01235 pyruv_carbox pyruvat 79.2 9.3 0.0002 44.1 9.4 72 234-315 688-763 (1143)
186 TIGR01290 nifB nitrogenase cof 79.2 53 0.0012 33.9 14.2 133 249-395 79-217 (442)
187 TIGR02660 nifV_homocitr homoci 79.1 12 0.00025 37.6 9.1 70 235-314 142-215 (365)
188 cd07941 DRE_TIM_LeuA3 Desulfob 79.0 62 0.0013 31.0 14.8 144 234-393 19-192 (273)
189 TIGR01859 fruc_bis_ald_ fructo 79.0 10 0.00022 36.6 8.4 121 219-363 151-278 (282)
190 KOG4175 Tryptophan synthase al 79.0 21 0.00045 32.6 9.5 109 275-395 5-149 (268)
191 PF00701 DHDPS: Dihydrodipicol 79.0 27 0.00059 33.5 11.5 96 235-340 83-189 (289)
192 PRK10812 putative DNAse; Provi 78.9 27 0.00058 33.4 11.2 114 269-393 107-234 (265)
193 PRK09195 gatY tagatose-bisphos 78.9 50 0.0011 31.9 13.0 140 237-390 31-201 (284)
194 TIGR00423 radical SAM domain p 78.9 65 0.0014 31.3 14.2 64 241-314 45-122 (309)
195 cd00381 IMPDH IMPDH: The catal 78.9 19 0.00042 35.5 10.4 67 238-315 96-162 (325)
196 PRK09195 gatY tagatose-bisphos 78.9 9.3 0.0002 37.0 8.0 120 218-363 152-280 (284)
197 PRK00043 thiE thiamine-phospha 78.8 50 0.0011 29.8 13.5 65 238-316 24-88 (212)
198 cd08205 RuBisCO_IV_RLP Ribulos 78.8 63 0.0014 32.5 14.2 74 239-316 150-230 (367)
199 cd00331 IGPS Indole-3-glycerol 78.8 35 0.00076 31.2 11.7 66 238-316 34-101 (217)
200 PF03932 CutC: CutC family; I 78.7 28 0.00061 31.9 10.7 103 235-354 72-191 (201)
201 PLN02803 beta-amylase 78.6 2 4.4E-05 44.6 3.5 59 237-298 109-171 (548)
202 PRK13958 N-(5'-phosphoribosyl) 78.6 54 0.0012 30.1 13.9 44 346-393 162-206 (207)
203 PRK12737 gatY tagatose-bisphos 78.6 8.8 0.00019 37.1 7.7 120 218-363 152-280 (284)
204 PRK12581 oxaloacetate decarbox 78.5 86 0.0019 32.6 15.3 142 235-394 35-205 (468)
205 cd01299 Met_dep_hydrolase_A Me 78.2 70 0.0015 31.2 15.1 65 239-314 124-198 (342)
206 cd04740 DHOD_1B_like Dihydroor 78.1 14 0.0003 35.7 9.1 91 219-316 135-260 (296)
207 TIGR01858 tag_bisphos_ald clas 78.0 9.5 0.00021 36.9 7.8 120 218-363 150-278 (282)
208 PRK13813 orotidine 5'-phosphat 77.7 56 0.0012 29.8 14.1 127 239-391 71-213 (215)
209 PRK14040 oxaloacetate decarbox 77.5 91 0.002 33.5 15.6 139 234-393 26-196 (593)
210 PRK06852 aldolase; Validated 77.5 75 0.0016 31.1 16.0 137 242-392 122-289 (304)
211 COG0826 Collagenase and relate 77.3 8.5 0.00019 38.3 7.5 87 239-329 17-112 (347)
212 PLN00197 beta-amylase; Provisi 77.3 2.3 4.9E-05 44.3 3.4 110 238-358 130-255 (573)
213 PLN02801 beta-amylase 77.2 2.4 5.2E-05 43.8 3.6 58 238-298 40-101 (517)
214 PLN02905 beta-amylase 77.2 2.3 4.9E-05 44.9 3.4 111 237-358 288-414 (702)
215 COG1609 PurR Transcriptional r 77.0 49 0.0011 32.6 12.8 128 265-397 67-208 (333)
216 PRK05904 coproporphyrinogen II 76.8 80 0.0017 31.5 14.3 60 248-315 56-119 (353)
217 PRK11858 aksA trans-homoaconit 76.8 16 0.00035 36.8 9.4 70 235-314 145-218 (378)
218 PLN02161 beta-amylase 76.8 2.4 5.2E-05 43.8 3.4 58 237-297 119-180 (531)
219 PRK15452 putative protease; Pr 76.7 19 0.0004 37.2 9.9 88 239-337 14-116 (443)
220 cd04726 KGPDC_HPS 3-Keto-L-gul 76.5 57 0.0012 29.2 13.0 106 240-371 69-188 (202)
221 KOG4013 Predicted Cu2+ homeost 76.4 19 0.00042 32.6 8.5 115 241-388 87-202 (255)
222 cd04730 NPD_like 2-Nitropropan 76.3 33 0.00071 31.7 10.8 104 239-372 71-188 (236)
223 PRK07998 gatY putative fructos 76.2 75 0.0016 30.8 13.3 135 238-389 32-197 (283)
224 cd00947 TBP_aldolase_IIB Tagat 76.0 70 0.0015 30.8 13.1 141 236-390 25-195 (276)
225 PRK12738 kbaY tagatose-bisphos 75.9 51 0.0011 31.9 12.1 141 237-390 31-201 (286)
226 cd00947 TBP_aldolase_IIB Tagat 75.9 14 0.00031 35.6 8.3 121 217-363 144-274 (276)
227 cd01310 TatD_DNAse TatD like p 75.9 37 0.0008 31.3 11.2 94 271-373 106-203 (251)
228 PRK12344 putative alpha-isopro 75.8 1.1E+02 0.0024 32.4 15.6 71 234-315 26-104 (524)
229 PF01116 F_bP_aldolase: Fructo 75.8 38 0.00082 32.8 11.3 73 237-317 30-104 (287)
230 COG0352 ThiE Thiamine monophos 75.8 42 0.00091 31.0 11.0 83 238-334 24-107 (211)
231 PRK13125 trpA tryptophan synth 75.7 45 0.00097 31.3 11.6 39 277-316 64-108 (244)
232 PRK10415 tRNA-dihydrouridine s 75.7 52 0.0011 32.3 12.5 123 170-316 77-224 (321)
233 PRK06801 hypothetical protein; 75.6 40 0.00087 32.6 11.4 72 237-317 31-105 (286)
234 PRK13361 molybdenum cofactor b 75.4 44 0.00096 32.9 12.0 64 240-315 53-120 (329)
235 PRK15458 tagatose 6-phosphate 75.0 1E+02 0.0022 31.5 15.1 122 245-392 38-206 (426)
236 COG0159 TrpA Tryptophan syntha 75.0 42 0.0009 32.1 11.0 41 275-315 4-50 (265)
237 TIGR02495 NrdG2 anaerobic ribo 74.8 11 0.00023 33.8 6.9 121 249-398 63-187 (191)
238 PRK08385 nicotinate-nucleotide 74.7 6.2 0.00014 38.0 5.5 66 239-317 193-260 (278)
239 TIGR02666 moaA molybdenum cofa 74.6 54 0.0012 32.2 12.4 61 243-315 54-118 (334)
240 cd00952 CHBPH_aldolase Trans-o 74.6 88 0.0019 30.5 14.3 54 236-297 91-144 (309)
241 PRK06512 thiamine-phosphate py 74.4 40 0.00086 31.3 10.7 80 239-332 30-111 (221)
242 PRK07709 fructose-bisphosphate 74.4 15 0.00032 35.6 8.0 120 218-363 153-281 (285)
243 cd08205 RuBisCO_IV_RLP Ribulos 74.2 84 0.0018 31.6 13.7 162 169-388 181-366 (367)
244 PRK13523 NADPH dehydrogenase N 74.1 29 0.00064 34.4 10.3 87 230-317 137-248 (337)
245 TIGR01361 DAHP_synth_Bsub phos 74.0 61 0.0013 30.9 12.1 123 262-394 65-194 (260)
246 cd00946 FBP_aldolase_IIA Class 73.8 1E+02 0.0022 30.8 14.2 150 235-389 27-233 (345)
247 TIGR02026 BchE magnesium-proto 73.4 1.2E+02 0.0025 31.9 15.1 60 246-315 237-303 (497)
248 cd02931 ER_like_FMN Enoate red 73.3 75 0.0016 32.1 13.2 67 230-296 145-226 (382)
249 PRK09249 coproporphyrinogen II 73.3 55 0.0012 33.8 12.5 124 248-395 102-232 (453)
250 TIGR02090 LEU1_arch isopropylm 73.2 22 0.00047 35.7 9.2 69 236-314 142-214 (363)
251 PRK05628 coproporphyrinogen II 73.1 67 0.0015 32.2 12.9 60 248-315 59-124 (375)
252 TIGR01858 tag_bisphos_ald clas 72.8 69 0.0015 31.0 12.2 142 236-390 28-199 (282)
253 PRK11572 copper homeostasis pr 72.7 47 0.001 31.4 10.7 91 239-341 77-182 (248)
254 PRK09389 (R)-citramalate synth 72.5 21 0.00046 37.3 9.3 69 236-314 144-216 (488)
255 PLN02417 dihydrodipicolinate s 72.5 93 0.002 29.8 14.4 91 237-340 85-183 (280)
256 COG1228 HutI Imidazolonepropio 72.2 19 0.0004 36.8 8.6 100 260-377 215-320 (406)
257 PRK06806 fructose-bisphosphate 72.2 64 0.0014 31.2 11.8 71 238-317 32-105 (281)
258 COG0042 tRNA-dihydrouridine sy 72.0 75 0.0016 31.3 12.5 124 170-316 79-228 (323)
259 cd04733 OYE_like_2_FMN Old yel 71.9 96 0.0021 30.6 13.5 90 227-316 141-256 (338)
260 PRK04147 N-acetylneuraminate l 71.8 68 0.0015 30.9 12.2 52 236-296 87-138 (293)
261 TIGR02319 CPEP_Pphonmut carbox 71.7 23 0.0005 34.4 8.7 65 235-316 165-233 (294)
262 PF13714 PEP_mutase: Phosphoen 71.7 22 0.00048 33.4 8.4 65 235-317 155-220 (238)
263 PRK09875 putative hydrolase; P 71.6 59 0.0013 31.6 11.5 162 223-394 90-273 (292)
264 PRK10076 pyruvate formate lyas 71.5 85 0.0018 28.9 12.2 101 273-394 54-158 (213)
265 PRK05835 fructose-bisphosphate 71.5 12 0.00027 36.5 6.7 120 218-363 152-303 (307)
266 PRK07998 gatY putative fructos 71.4 13 0.00027 36.0 6.8 120 218-363 150-277 (283)
267 COG0191 Fba Fructose/tagatose 71.4 1E+02 0.0022 29.8 13.2 75 235-317 29-106 (286)
268 PRK08610 fructose-bisphosphate 71.2 16 0.00035 35.4 7.4 120 218-363 153-281 (286)
269 PRK12344 putative alpha-isopro 71.2 23 0.00051 37.4 9.3 81 236-326 159-251 (524)
270 PRK14024 phosphoribosyl isomer 71.2 45 0.00097 31.3 10.4 98 218-327 106-238 (241)
271 PRK12331 oxaloacetate decarbox 71.1 1.3E+02 0.0029 31.1 15.0 144 234-392 25-194 (448)
272 COG0269 SgbH 3-hexulose-6-phos 71.0 37 0.0008 31.4 9.3 96 232-341 64-176 (217)
273 PRK06843 inosine 5-monophospha 70.9 16 0.00035 37.2 7.6 68 237-315 154-221 (404)
274 PF00290 Trp_syntA: Tryptophan 70.7 90 0.002 29.8 12.3 153 235-398 24-201 (259)
275 PRK12999 pyruvate carboxylase; 70.5 1.2E+02 0.0026 35.4 15.4 147 231-393 551-732 (1146)
276 PRK07084 fructose-bisphosphate 70.5 81 0.0018 31.1 12.2 145 237-390 37-215 (321)
277 PRK05458 guanosine 5'-monophos 70.4 83 0.0018 31.1 12.4 67 237-314 98-166 (326)
278 PRK07534 methionine synthase I 70.3 57 0.0012 32.4 11.3 68 303-374 138-214 (336)
279 PRK09856 fructoselysine 3-epim 70.3 97 0.0021 29.1 13.0 97 234-332 89-203 (275)
280 PRK12857 fructose-1,6-bisphosp 70.1 23 0.0005 34.2 8.3 121 217-363 151-280 (284)
281 PTZ00170 D-ribulose-5-phosphat 69.9 95 0.0021 28.9 12.8 128 238-392 78-223 (228)
282 PRK08446 coproporphyrinogen II 69.9 1.1E+02 0.0024 30.4 13.4 60 248-315 51-114 (350)
283 PRK08745 ribulose-phosphate 3- 69.4 97 0.0021 28.8 14.5 144 239-390 20-192 (223)
284 TIGR03551 F420_cofH 7,8-dideme 69.4 1.2E+02 0.0026 29.9 14.4 66 239-314 77-156 (343)
285 TIGR03326 rubisco_III ribulose 69.4 1.4E+02 0.003 30.6 14.0 182 169-408 195-404 (412)
286 PRK09058 coproporphyrinogen II 69.3 85 0.0018 32.4 12.8 123 248-381 114-261 (449)
287 PRK12737 gatY tagatose-bisphos 69.1 1.1E+02 0.0024 29.6 12.7 140 236-390 30-201 (284)
288 PRK08673 3-deoxy-7-phosphohept 69.0 1.3E+02 0.0027 30.0 13.3 149 235-394 107-262 (335)
289 TIGR02313 HpaI-NOT-DapA 2,4-di 68.9 1.2E+02 0.0025 29.4 15.4 95 237-340 84-190 (294)
290 PRK09490 metH B12-dependent me 68.8 1.8E+02 0.0039 34.2 16.2 154 229-392 378-551 (1229)
291 PRK02615 thiamine-phosphate py 68.8 98 0.0021 30.9 12.6 84 237-334 159-243 (347)
292 PRK08645 bifunctional homocyst 68.4 1.8E+02 0.0039 31.4 15.5 155 216-392 35-221 (612)
293 PRK15052 D-tagatose-1,6-bispho 68.3 89 0.0019 31.8 12.1 68 244-320 34-128 (421)
294 TIGR00284 dihydropteroate synt 68.3 1.6E+02 0.0035 30.9 15.6 144 235-395 165-312 (499)
295 PRK07315 fructose-bisphosphate 68.2 19 0.0004 35.1 7.2 110 246-363 164-289 (293)
296 PRK00915 2-isopropylmalate syn 68.1 18 0.0004 38.0 7.7 74 235-314 149-226 (513)
297 PRK08255 salicylyl-CoA 5-hydro 68.1 52 0.0011 36.5 11.6 87 230-316 546-658 (765)
298 PRK04180 pyridoxal biosynthesi 67.6 1.2E+02 0.0027 29.3 14.8 80 219-316 59-148 (293)
299 PRK06559 nicotinate-nucleotide 67.5 7.6 0.00017 37.6 4.3 61 239-317 208-270 (290)
300 PRK12857 fructose-1,6-bisphosp 67.5 1.2E+02 0.0026 29.4 12.5 141 236-390 30-201 (284)
301 TIGR02668 moaA_archaeal probab 67.4 98 0.0021 29.8 12.3 58 245-315 53-114 (302)
302 TIGR02109 PQQ_syn_pqqE coenzym 67.3 1.1E+02 0.0024 30.2 12.9 60 243-315 48-111 (358)
303 PRK08185 hypothetical protein; 67.1 30 0.00065 33.5 8.3 120 218-363 146-276 (283)
304 PRK13803 bifunctional phosphor 66.9 1.2E+02 0.0025 32.8 13.7 39 354-392 173-214 (610)
305 cd00003 PNPsynthase Pyridoxine 66.9 30 0.00066 32.3 7.9 116 241-388 76-201 (234)
306 PRK08610 fructose-bisphosphate 66.7 1.3E+02 0.0028 29.2 13.1 142 237-389 31-201 (286)
307 PRK03512 thiamine-phosphate py 66.4 75 0.0016 29.2 10.6 77 240-330 24-101 (211)
308 TIGR01037 pyrD_sub1_fam dihydr 66.4 49 0.0011 32.0 9.9 91 219-316 138-263 (300)
309 cd04731 HisF The cyclase subun 66.2 1.1E+02 0.0024 28.4 13.1 137 238-388 30-190 (243)
310 PLN02274 inosine-5'-monophosph 66.2 28 0.0006 36.6 8.5 68 236-314 248-315 (505)
311 TIGR00977 LeuA_rel 2-isopropyl 65.9 23 0.00049 37.5 7.9 70 236-314 155-228 (526)
312 TIGR02082 metH 5-methyltetrahy 65.9 1.1E+02 0.0024 35.8 13.8 87 304-399 156-257 (1178)
313 PRK13111 trpA tryptophan synth 65.7 56 0.0012 31.1 9.9 56 331-398 91-146 (258)
314 TIGR01334 modD putative molybd 65.5 56 0.0012 31.5 9.8 42 274-316 174-215 (277)
315 TIGR03249 KdgD 5-dehydro-4-deo 65.5 1.2E+02 0.0025 29.4 12.3 90 239-338 90-188 (296)
316 PRK08005 epimerase; Validated 65.5 1.1E+02 0.0024 28.1 11.4 20 373-392 167-186 (210)
317 PRK09250 fructose-bisphosphate 65.4 1.5E+02 0.0033 29.5 15.2 130 241-383 152-330 (348)
318 PF05913 DUF871: Bacterial pro 65.3 17 0.00037 36.4 6.5 88 234-328 13-108 (357)
319 PRK09196 fructose-1,6-bisphosp 65.2 1.4E+02 0.0031 29.7 12.8 73 237-317 31-106 (347)
320 PLN03228 methylthioalkylmalate 65.2 20 0.00044 37.5 7.3 74 235-314 239-316 (503)
321 TIGR00010 hydrolase, TatD fami 65.0 1.1E+02 0.0023 28.1 11.7 93 272-373 107-203 (252)
322 COG0084 TatD Mg-dependent DNas 65.0 1.3E+02 0.0028 28.6 14.2 113 272-395 111-236 (256)
323 PRK11177 phosphoenolpyruvate-p 64.9 29 0.00064 37.1 8.5 82 274-361 484-572 (575)
324 PRK08745 ribulose-phosphate 3- 64.8 1.2E+02 0.0026 28.2 13.0 124 239-390 76-219 (223)
325 PRK07896 nicotinate-nucleotide 64.8 12 0.00026 36.3 5.1 63 240-317 211-275 (289)
326 PRK15108 biotin synthase; Prov 64.8 1.5E+02 0.0033 29.4 13.3 73 236-317 80-154 (345)
327 PRK12858 tagatose 1,6-diphosph 64.6 50 0.0011 32.8 9.6 150 241-394 112-318 (340)
328 COG0157 NadC Nicotinate-nucleo 64.6 13 0.00028 35.7 5.2 62 240-317 200-263 (280)
329 TIGR00167 cbbA ketose-bisphosp 64.4 24 0.00053 34.2 7.2 121 218-363 155-284 (288)
330 PRK14847 hypothetical protein; 64.4 1.6E+02 0.0034 29.3 13.7 132 238-393 57-199 (333)
331 PTZ00413 lipoate synthase; Pro 64.3 1.7E+02 0.0037 29.7 16.1 152 238-402 183-370 (398)
332 CHL00200 trpA tryptophan synth 64.1 56 0.0012 31.2 9.5 26 290-315 17-48 (263)
333 PRK07259 dihydroorotate dehydr 64.1 31 0.00067 33.4 8.0 90 219-315 138-262 (301)
334 PRK13347 coproporphyrinogen II 64.0 91 0.002 32.2 11.8 61 248-316 103-169 (453)
335 TIGR03572 WbuZ glycosyl amidat 64.0 53 0.0012 30.3 9.3 129 173-315 63-226 (232)
336 cd00953 KDG_aldolase KDG (2-ke 63.9 1.4E+02 0.003 28.6 13.2 70 236-315 21-97 (279)
337 TIGR00676 fadh2 5,10-methylene 63.7 1.4E+02 0.003 28.5 14.8 138 239-394 19-183 (272)
338 TIGR00736 nifR3_rel_arch TIM-b 63.6 62 0.0014 30.3 9.5 87 218-316 115-220 (231)
339 PLN02411 12-oxophytodienoate r 63.4 77 0.0017 32.1 10.9 67 230-296 160-239 (391)
340 TIGR00735 hisF imidazoleglycer 63.1 92 0.002 29.3 10.9 80 237-328 157-246 (254)
341 PRK06438 hypothetical protein; 63.0 95 0.0021 30.1 10.8 144 187-374 126-272 (292)
342 PRK07379 coproporphyrinogen II 63.0 1.3E+02 0.0027 30.6 12.5 61 248-316 66-132 (400)
343 TIGR02082 metH 5-methyltetrahy 62.9 3.1E+02 0.0067 32.2 18.7 151 231-395 144-317 (1178)
344 PF10566 Glyco_hydro_97: Glyco 62.8 24 0.00051 34.0 6.7 84 234-317 31-127 (273)
345 PLN02334 ribulose-phosphate 3- 62.7 55 0.0012 30.3 9.1 19 238-256 23-41 (229)
346 TIGR01334 modD putative molybd 62.4 27 0.00059 33.7 7.1 64 239-317 199-264 (277)
347 COG1180 PflA Pyruvate-formate 62.4 66 0.0014 30.6 9.7 120 272-396 98-243 (260)
348 cd01302 Cyclic_amidohydrolases 62.3 1.1E+02 0.0024 30.1 11.7 93 244-349 90-188 (337)
349 TIGR00973 leuA_bact 2-isopropy 62.3 26 0.00057 36.7 7.5 74 235-314 146-223 (494)
350 TIGR00539 hemN_rel putative ox 62.0 1.5E+02 0.0032 29.5 12.6 60 249-316 52-117 (360)
351 PRK14057 epimerase; Provisiona 62.0 67 0.0015 30.6 9.5 34 239-285 89-122 (254)
352 TIGR03278 methan_mark_10 putat 61.9 38 0.00083 34.5 8.4 101 273-396 89-198 (404)
353 TIGR01304 IMP_DH_rel_2 IMP deh 61.6 62 0.0013 32.6 9.7 83 222-314 117-214 (369)
354 PRK13396 3-deoxy-7-phosphohept 61.5 1.8E+02 0.0039 29.1 13.0 147 236-394 116-271 (352)
355 PRK06978 nicotinate-nucleotide 61.4 11 0.00024 36.6 4.2 62 238-317 215-278 (294)
356 TIGR01520 FruBisAldo_II_A fruc 61.4 1.8E+02 0.0039 29.1 15.2 146 235-390 38-246 (357)
357 cd00377 ICL_PEPM Members of th 61.2 1.5E+02 0.0032 27.9 12.2 131 243-389 24-194 (243)
358 PRK05848 nicotinate-nucleotide 61.1 19 0.00042 34.6 5.8 63 240-317 194-258 (273)
359 PF01261 AP_endonuc_2: Xylose 61.1 82 0.0018 27.8 9.8 63 235-299 71-136 (213)
360 PRK09722 allulose-6-phosphate 61.0 1.4E+02 0.0031 27.8 13.1 129 239-393 73-222 (229)
361 PF01791 DeoC: DeoC/LacD famil 60.9 17 0.00036 33.9 5.3 99 238-340 79-204 (236)
362 TIGR00559 pdxJ pyridoxine 5'-p 60.9 45 0.00098 31.2 7.9 89 274-389 111-202 (237)
363 PRK14042 pyruvate carboxylase 60.9 2.4E+02 0.0053 30.4 14.8 140 236-393 27-195 (596)
364 TIGR03151 enACPred_II putative 60.8 1.7E+02 0.0037 28.6 13.3 83 239-340 78-172 (307)
365 cd00452 KDPG_aldolase KDPG and 60.7 1.3E+02 0.0027 27.0 11.5 79 235-330 16-98 (190)
366 cd07947 DRE_TIM_Re_CS Clostrid 60.5 1.6E+02 0.0035 28.3 14.7 144 234-393 20-198 (279)
367 PRK00748 1-(5-phosphoribosyl)- 60.5 1.4E+02 0.003 27.4 12.0 138 238-389 33-188 (233)
368 PRK07428 nicotinate-nucleotide 60.5 30 0.00065 33.6 7.0 62 240-316 208-271 (288)
369 COG0119 LeuA Isopropylmalate/h 60.4 2E+02 0.0044 29.3 13.8 25 235-259 24-48 (409)
370 COG3494 Uncharacterized protei 60.3 60 0.0013 30.8 8.6 125 278-406 20-179 (279)
371 PRK05835 fructose-bisphosphate 60.2 1.8E+02 0.0038 28.6 12.2 141 237-390 30-203 (307)
372 KOG0369 Pyruvate carboxylase [ 60.2 37 0.00081 36.6 7.9 72 235-315 718-793 (1176)
373 cd08210 RLP_RrRLP Ribulose bis 59.9 2E+02 0.0042 29.0 14.9 161 169-390 176-364 (364)
374 PRK06096 molybdenum transport 59.9 28 0.0006 33.7 6.6 65 238-317 199-265 (284)
375 PF01026 TatD_DNase: TatD rela 59.8 40 0.00086 31.8 7.7 113 273-393 111-234 (255)
376 PRK11572 copper homeostasis pr 59.8 60 0.0013 30.8 8.7 127 169-317 72-199 (248)
377 cd04731 HisF The cyclase subun 59.7 97 0.0021 28.8 10.3 80 238-329 152-241 (243)
378 PRK07807 inosine 5-monophospha 59.7 66 0.0014 33.6 9.8 68 233-314 224-294 (479)
379 PF01136 Peptidase_U32: Peptid 59.6 50 0.0011 30.5 8.3 86 236-340 3-97 (233)
380 TIGR03700 mena_SCO4494 putativ 59.6 1.9E+02 0.0041 28.7 14.2 65 240-314 87-165 (351)
381 cd08206 RuBisCO_large_I_II_III 59.5 2.1E+02 0.0046 29.3 13.5 185 169-407 183-405 (414)
382 cd01292 metallo-dependent_hydr 59.2 1.4E+02 0.0031 27.1 13.6 127 246-389 113-254 (275)
383 TIGR00977 LeuA_rel 2-isopropyl 59.0 2.4E+02 0.0053 29.8 15.4 143 235-393 23-195 (526)
384 PRK11320 prpB 2-methylisocitra 58.9 52 0.0011 32.0 8.4 66 235-317 166-235 (292)
385 TIGR03217 4OH_2_O_val_ald 4-hy 58.9 1.9E+02 0.0042 28.6 14.6 142 234-393 23-184 (333)
386 cd00954 NAL N-Acetylneuraminic 58.7 1.5E+02 0.0033 28.4 11.8 94 238-340 86-190 (288)
387 cd02930 DCR_FMN 2,4-dienoyl-Co 58.3 1.2E+02 0.0026 30.1 11.2 86 230-315 132-243 (353)
388 cd01917 ACS_2 Acetyl-CoA synth 57.7 1.1E+02 0.0024 29.4 10.0 75 274-361 142-225 (287)
389 PLN02898 HMP-P kinase/thiamin- 57.6 1.7E+02 0.0036 30.7 12.6 80 238-331 310-390 (502)
390 TIGR03332 salvage_mtnW 2,3-dik 57.3 2.3E+02 0.005 29.0 15.2 180 169-407 190-397 (407)
391 PRK08999 hypothetical protein; 57.2 1.9E+02 0.0041 27.9 12.4 77 239-330 148-225 (312)
392 TIGR00683 nanA N-acetylneurami 57.1 1.9E+02 0.0041 27.9 15.1 51 238-296 86-136 (290)
393 TIGR02317 prpB methylisocitrat 57.0 60 0.0013 31.4 8.5 66 235-317 161-230 (285)
394 TIGR00640 acid_CoA_mut_C methy 57.0 1.2E+02 0.0026 25.6 9.6 75 240-326 45-121 (132)
395 TIGR01305 GMP_reduct_1 guanosi 56.6 73 0.0016 31.6 8.9 113 261-394 77-209 (343)
396 PRK10508 hypothetical protein; 56.6 15 0.00033 36.3 4.4 49 343-392 284-332 (333)
397 PRK09016 quinolinate phosphori 56.3 18 0.00038 35.3 4.6 60 240-317 220-281 (296)
398 COG1038 PycA Pyruvate carboxyl 56.3 37 0.0008 37.4 7.3 71 234-314 693-767 (1149)
399 cd04738 DHOD_2_like Dihydrooro 56.3 83 0.0018 30.9 9.6 91 220-316 179-309 (327)
400 PRK05286 dihydroorotate dehydr 56.2 69 0.0015 31.8 9.0 91 220-315 188-317 (344)
401 PRK15447 putative protease; Pr 56.0 46 0.001 32.4 7.6 81 239-326 19-105 (301)
402 cd02810 DHOD_DHPD_FMN Dihydroo 55.9 84 0.0018 30.1 9.4 92 219-316 143-272 (289)
403 TIGR00742 yjbN tRNA dihydrouri 55.7 70 0.0015 31.4 8.9 131 170-316 67-223 (318)
404 PRK00043 thiE thiamine-phospha 55.7 1.5E+02 0.0034 26.5 12.1 122 239-392 72-210 (212)
405 PRK09529 bifunctional acetyl-C 55.4 1E+02 0.0022 33.4 10.2 107 275-403 151-265 (711)
406 TIGR00737 nifR3_yhdG putative 55.1 2.1E+02 0.0046 27.9 12.7 124 170-316 75-222 (319)
407 KOG1579 Homocysteine S-methylt 55.1 2.1E+02 0.0045 28.1 11.6 151 217-383 46-241 (317)
408 TIGR00343 pyridoxal 5'-phospha 54.9 2.1E+02 0.0045 27.7 12.1 60 238-315 79-140 (287)
409 cd08208 RLP_Photo Ribulose bis 54.8 2.6E+02 0.0056 28.8 15.0 170 169-395 211-404 (424)
410 PRK08091 ribulose-phosphate 3- 54.5 1E+02 0.0022 28.9 9.2 35 238-285 81-115 (228)
411 PRK10425 DNase TatD; Provision 54.5 75 0.0016 30.2 8.6 113 272-395 107-238 (258)
412 cd06556 ICL_KPHMT Members of t 54.5 1.1E+02 0.0023 28.9 9.5 72 238-327 92-186 (240)
413 PF00478 IMPDH: IMP dehydrogen 54.4 45 0.00098 33.3 7.2 91 239-340 111-222 (352)
414 COG0107 HisF Imidazoleglycerol 54.3 80 0.0017 29.6 8.3 140 238-390 33-198 (256)
415 TIGR00167 cbbA ketose-bisphosp 54.0 2.2E+02 0.0047 27.7 11.8 75 236-317 30-108 (288)
416 PRK06543 nicotinate-nucleotide 53.8 18 0.00038 35.0 4.1 61 239-317 204-266 (281)
417 cd04734 OYE_like_3_FMN Old yel 53.6 1.3E+02 0.0029 29.7 10.6 112 227-338 133-294 (343)
418 PRK13209 L-xylulose 5-phosphat 53.2 2E+02 0.0044 27.1 18.6 157 234-393 98-276 (283)
419 PF01116 F_bP_aldolase: Fructo 53.0 12 0.00026 36.3 2.9 122 217-363 151-283 (287)
420 PRK05451 dihydroorotase; Provi 53.0 1.3E+02 0.0029 29.7 10.5 69 275-349 120-207 (345)
421 TIGR03699 mena_SCO4550 menaqui 53.0 2.3E+02 0.0051 27.8 12.6 65 240-314 80-158 (340)
422 cd04722 TIM_phosphate_binding 52.9 1.5E+02 0.0033 25.5 10.7 66 241-317 77-144 (200)
423 PF01373 Glyco_hydro_14: Glyco 52.9 5 0.00011 40.5 0.3 57 236-298 17-80 (402)
424 TIGR00735 hisF imidazoleglycer 52.9 2E+02 0.0044 27.0 13.9 138 239-389 34-197 (254)
425 cd07942 DRE_TIM_LeuA Mycobacte 52.8 2.2E+02 0.0048 27.5 15.6 32 234-268 22-53 (284)
426 PRK13762 tRNA-modifying enzyme 52.6 1.4E+02 0.0031 29.3 10.5 41 272-315 144-185 (322)
427 cd00019 AP2Ec AP endonuclease 52.5 1.4E+02 0.003 28.2 10.3 66 232-299 82-147 (279)
428 cd08210 RLP_RrRLP Ribulose bis 52.2 2.6E+02 0.0057 28.1 13.3 72 241-316 147-225 (364)
429 cd01096 Alkanal_monooxygenase 52.2 14 0.0003 36.2 3.3 33 343-375 272-304 (315)
430 PLN02321 2-isopropylmalate syn 52.2 53 0.0011 35.6 7.8 71 235-314 240-317 (632)
431 cd01294 DHOase Dihydroorotase 51.9 1.1E+02 0.0023 30.1 9.6 23 273-298 113-135 (335)
432 PRK08445 hypothetical protein; 51.8 2.1E+02 0.0045 28.5 11.6 66 238-313 79-158 (348)
433 PRK07807 inosine 5-monophospha 51.7 1.3E+02 0.0028 31.5 10.4 147 239-401 169-337 (479)
434 PRK08883 ribulose-phosphate 3- 51.3 2E+02 0.0044 26.6 16.0 144 239-391 16-189 (220)
435 cd02911 arch_FMN Archeal FMN-b 51.3 1.3E+02 0.0029 28.0 9.6 123 169-320 84-224 (233)
436 cd02071 MM_CoA_mut_B12_BD meth 51.3 1.4E+02 0.003 24.6 9.7 75 241-327 43-119 (122)
437 PRK08649 inosine 5-monophospha 51.3 79 0.0017 31.8 8.5 81 222-315 116-214 (368)
438 PLN02229 alpha-galactosidase 51.2 1.8E+02 0.0038 30.0 11.0 86 243-335 93-213 (427)
439 TIGR01303 IMP_DH_rel_1 IMP deh 51.1 70 0.0015 33.4 8.4 67 234-314 223-292 (475)
440 PRK06806 fructose-bisphosphate 51.0 51 0.0011 31.8 6.9 106 246-363 164-277 (281)
441 TIGR02810 agaZ_gatZ D-tagatose 51.0 2.9E+02 0.0063 28.2 16.2 123 244-392 33-202 (420)
442 cd02940 DHPD_FMN Dihydropyrimi 50.9 43 0.00092 32.5 6.5 43 218-260 148-205 (299)
443 PLN02951 Molybderin biosynthes 50.9 2.7E+02 0.0059 27.9 14.8 62 242-315 100-165 (373)
444 cd04732 HisA HisA. Phosphorib 50.7 2E+02 0.0043 26.3 11.3 138 238-389 32-188 (234)
445 TIGR01125 MiaB-like tRNA modif 50.7 2.2E+02 0.0048 29.1 12.0 39 239-285 171-214 (430)
446 TIGR01235 pyruv_carbox pyruvat 50.7 3.7E+02 0.0079 31.5 14.7 129 252-393 569-730 (1143)
447 PRK07896 nicotinate-nucleotide 50.3 1.3E+02 0.0029 29.1 9.6 46 338-389 220-266 (289)
448 cd00564 TMP_TenI Thiamine mono 50.0 1.8E+02 0.0038 25.4 11.9 77 237-327 14-91 (196)
449 COG3142 CutC Uncharacterized p 50.0 71 0.0015 29.8 7.2 119 223-359 117-240 (241)
450 PRK12290 thiE thiamine-phospha 49.4 2.3E+02 0.005 29.2 11.5 79 240-332 222-301 (437)
451 cd07947 DRE_TIM_Re_CS Clostrid 49.4 2.5E+02 0.0054 27.0 13.2 75 239-315 78-169 (279)
452 TIGR02321 Pphn_pyruv_hyd phosp 49.3 77 0.0017 30.8 7.8 66 235-315 166-234 (290)
453 PRK07084 fructose-bisphosphate 49.2 65 0.0014 31.8 7.3 124 218-362 161-316 (321)
454 PRK13307 bifunctional formalde 48.7 3.1E+02 0.0067 27.9 13.2 122 241-390 243-378 (391)
455 TIGR00262 trpA tryptophan synt 48.6 2.4E+02 0.0053 26.7 11.7 53 239-307 106-161 (256)
456 PRK06106 nicotinate-nucleotide 48.5 23 0.0005 34.2 4.1 59 241-317 207-267 (281)
457 PRK09722 allulose-6-phosphate 48.2 2E+02 0.0043 26.9 10.1 107 278-392 74-192 (229)
458 cd08207 RLP_NonPhot Ribulose b 48.2 3.2E+02 0.0069 27.9 14.9 179 169-407 194-400 (406)
459 cd00453 FTBP_aldolase_II Fruct 48.0 2.9E+02 0.0064 27.4 14.5 149 238-394 27-237 (340)
460 PLN02858 fructose-bisphosphate 47.8 42 0.00092 39.8 6.8 112 241-363 1255-1374(1378)
461 PRK13523 NADPH dehydrogenase N 47.2 3E+02 0.0064 27.3 12.5 66 234-299 36-107 (337)
462 PRK13585 1-(5-phosphoribosyl)- 47.0 1.1E+02 0.0025 28.2 8.5 81 238-330 35-124 (241)
463 PLN02334 ribulose-phosphate 3- 46.7 2.4E+02 0.0051 26.0 12.7 127 239-392 79-224 (229)
464 COG1105 FruK Fructose-1-phosph 46.6 61 0.0013 31.8 6.6 50 346-396 112-161 (310)
465 PRK08599 coproporphyrinogen II 46.6 3.1E+02 0.0067 27.3 16.7 61 248-316 51-117 (377)
466 cd04722 TIM_phosphate_binding 46.6 1E+02 0.0022 26.6 7.9 75 235-317 12-92 (200)
467 TIGR01501 MthylAspMutase methy 46.4 1E+02 0.0022 26.2 7.3 18 305-322 25-42 (134)
468 PRK13587 1-(5-phosphoribosyl)- 46.3 2.5E+02 0.0054 26.2 12.6 135 240-389 36-190 (234)
469 cd07944 DRE_TIM_HOA_like 4-hyd 46.1 2.7E+02 0.0058 26.5 14.6 142 234-393 19-179 (266)
470 TIGR01302 IMP_dehydrog inosine 46.0 2.4E+02 0.0051 29.2 11.3 65 236-314 224-291 (450)
471 PRK15446 phosphonate metabolis 45.5 2.5E+02 0.0054 28.2 11.2 95 270-373 211-307 (383)
472 PLN02617 imidazole glycerol ph 45.3 1.2E+02 0.0025 32.3 9.0 94 238-340 270-394 (538)
473 PRK05437 isopentenyl pyrophosp 45.2 1.3E+02 0.0028 30.0 9.0 68 246-316 146-217 (352)
474 cd07943 DRE_TIM_HOA 4-hydroxy- 45.1 2.7E+02 0.0059 26.2 14.6 142 234-393 21-182 (263)
475 PRK08318 dihydropyrimidine deh 44.8 1.2E+02 0.0027 30.8 9.0 95 218-315 148-281 (420)
476 COG2006 Uncharacterized conser 44.7 42 0.00092 32.2 5.0 54 345-398 11-78 (293)
477 cd02809 alpha_hydroxyacid_oxid 44.6 1.8E+02 0.0039 28.1 9.7 62 242-315 136-199 (299)
478 PF09505 Dimeth_Pyl: Dimethyla 44.4 70 0.0015 31.4 6.5 171 192-385 158-372 (466)
479 cd04740 DHOD_1B_like Dihydroor 44.3 2.9E+02 0.0064 26.4 12.4 69 238-315 105-185 (296)
480 COG0036 Rpe Pentose-5-phosphat 44.2 2.7E+02 0.0058 25.9 13.6 144 239-392 20-192 (220)
481 COG1099 Predicted metal-depend 44.0 2.6E+02 0.0057 26.2 9.8 112 250-375 96-215 (254)
482 COG0826 Collagenase and relate 43.9 1.2E+02 0.0027 30.1 8.5 85 237-340 81-174 (347)
483 PLN02716 nicotinate-nucleotide 43.5 31 0.00068 33.7 4.1 65 239-317 214-291 (308)
484 PRK08208 coproporphyrinogen II 43.2 3.8E+02 0.0083 27.4 12.8 59 249-315 92-157 (430)
485 cd02810 DHOD_DHPD_FMN Dihydroo 43.1 3E+02 0.0065 26.2 11.3 73 241-317 117-197 (289)
486 PTZ00170 D-ribulose-5-phosphat 43.0 2.8E+02 0.006 25.7 11.2 71 239-316 23-95 (228)
487 COG2876 AroA 3-deoxy-D-arabino 42.9 1.2E+02 0.0027 29.0 7.8 120 237-370 61-187 (286)
488 TIGR00970 leuA_yeast 2-isoprop 42.6 4.5E+02 0.0098 28.1 13.8 131 235-404 184-324 (564)
489 PRK15452 putative protease; Pr 42.5 1.2E+02 0.0027 31.2 8.6 85 237-340 78-171 (443)
490 PRK13585 1-(5-phosphoribosyl)- 42.3 2.5E+02 0.0054 25.9 10.1 79 237-327 151-238 (241)
491 PRK04165 acetyl-CoA decarbonyl 42.2 4.2E+02 0.009 27.5 14.2 141 224-391 105-253 (450)
492 PRK07709 fructose-bisphosphate 41.8 3.3E+02 0.0072 26.3 14.7 141 237-389 31-201 (285)
493 PLN02274 inosine-5'-monophosph 41.5 1.1E+02 0.0025 32.1 8.2 117 239-369 186-317 (505)
494 KOG3111 D-ribulose-5-phosphate 41.4 2.8E+02 0.0061 25.4 9.8 85 238-329 20-109 (224)
495 COG3867 Arabinogalactan endo-1 41.4 3.5E+02 0.0077 26.5 10.9 102 232-334 153-280 (403)
496 PRK08207 coproporphyrinogen II 41.1 4.5E+02 0.0097 27.6 15.0 62 248-317 218-287 (488)
497 PLN02428 lipoic acid synthase 40.5 3.9E+02 0.0084 26.7 15.1 151 244-402 142-322 (349)
498 PRK13399 fructose-1,6-bisphosp 40.3 1.5E+02 0.0032 29.7 8.3 73 237-317 31-106 (347)
499 PRK09997 hydroxypyruvate isome 40.3 3.1E+02 0.0067 25.5 14.6 97 236-334 86-202 (258)
500 cd06272 PBP1_hexuronate_repres 40.2 2.6E+02 0.0057 25.4 9.9 122 269-395 12-142 (261)
No 1
>PLN02433 uroporphyrinogen decarboxylase
Probab=100.00 E-value=3.8e-74 Score=569.32 Aligned_cols=344 Identities=64% Similarity=1.130 Sum_probs=326.5
Q ss_pred HHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCe
Q 015201 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVP 137 (411)
Q Consensus 58 v~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~ 137 (411)
++++++|+++||+|||+|+|+|+|+|+|+++++...++.+++.||+++++++++++++||+|++++++|+.++++|||++
T Consensus 1 ~~~~~~g~~~dr~Pv~~~~q~g~~~~ey~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~di~~~~ea~G~~ 80 (345)
T PLN02433 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVILFSDILTPLPAMGIP 80 (345)
T ss_pred ChHHHCCCCCCCCCeeeeecchhccHHHHHHHHhcCCHHHHhCCHHHHHHHHHHHHHHhCCCeEEecCCCCcCHHHcCCe
Confidence 46899999999999999999999999999887655579999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHH
Q 015201 138 FDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIK 216 (411)
Q Consensus 138 ~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l 216 (411)
+.|+++.+|++.+||++++|+++|+.++++. ++.++++++++++++++++|++++++||||+|++|+||++++++++++
T Consensus 81 i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~l~~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~ 160 (345)
T PLN02433 81 FDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIK 160 (345)
T ss_pred EEECCCCCCccCCCCCCHHHHHhccCCCchhhhHHHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHH
Confidence 9999887897788999999999998877755 999999999999999999999999999999999999987788899999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
.+++++||.+|++|+++++.+++|+++++|+||++++++|+|++++||++|+||++||+|++++.+++.+++.|+++|+|
T Consensus 161 ~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c 240 (345)
T PLN02433 161 KMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240 (345)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998755678999999
Q ss_pred CCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC
Q 015201 297 GNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV 376 (411)
Q Consensus 297 G~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~ 376 (411)
|+...++++.++|++++++|+.+|+.++++.+|++++++||+||.+|.||+|+|+++|+++|+.++++|||+++||++|+
T Consensus 241 G~~~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~ 320 (345)
T PLN02433 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLV 320 (345)
T ss_pred CCHHHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Confidence 99767899999999999999999999999999999999999999877899999999999999998777899999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCC
Q 015201 377 GTPEEAVAHFFEVGKSMKYDNSSQN 401 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~~yg~~~~~~~ 401 (411)
+||+||++||++++|+||+.++.|.
T Consensus 321 ~tp~eNi~a~v~av~~~~~~~~~~~ 345 (345)
T PLN02433 321 GTPEENVAHFFDVARELRYEMIAQA 345 (345)
T ss_pred CCCHHHHHHHHHHHHHhChhhhccC
Confidence 9999999999999999999999874
No 2
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=100.00 E-value=5.5e-74 Score=568.83 Aligned_cols=342 Identities=42% Similarity=0.799 Sum_probs=324.9
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
.+++||++++++|+++||+|||+|.++|+|+|+|++++.+++++.|++.|++++++++++++++||+|++++++|+.+++
T Consensus 2 ~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~~ 81 (346)
T PRK00115 2 ELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTPP 81 (346)
T ss_pred CcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhhH
Confidence 37999999999999999999999999999999999999888679999999999999999999999999999999999999
Q ss_pred ccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 132 PAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 132 ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
+|||+++.|+++.+|++.++|++++|+++|+.++++. ++.++++++++++++++++|++++++||||++++|+||+.++
T Consensus 82 ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~ 161 (346)
T PRK00115 82 DAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSK 161 (346)
T ss_pred HHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCCCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCc
Confidence 9999999999888998888899999999999888765 999999999999999999999999999999999999866677
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
++++++++++++||.+|++|+.+++.+++|+++++++|||+|+++|+++++|||++|+||++||+|++++.+++.+|+.
T Consensus 162 ~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~- 240 (346)
T PRK00115 162 DYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDV- 240 (346)
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999975444
Q ss_pred EEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 291 IVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 291 ~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
.++|.||++. .++++.++|++++++|+.+|+.++++.+|++++++||+||.+|+||+|+|+++|+++|+.++++||||+
T Consensus 241 ~ilh~cg~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~ 320 (346)
T PRK00115 241 PVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFN 320 (346)
T ss_pred CEEEEcCCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeee
Confidence 4789999987 689999999999999999999999999999999999999977789999999999999999877899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
+||++|++||+|||+||++++|+|+
T Consensus 321 ~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 321 LGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred cCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987
No 3
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-71 Score=540.42 Aligned_cols=343 Identities=40% Similarity=0.766 Sum_probs=327.3
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
++++|+++|++||++||+|||+++|||||+|+|+.++++..+|.|+|.|||+++++++++.++||+|++++++|++++++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred chHHHHHHHHcCCCCCCCCeEeeecccccccHHHHHHHhcCCHHHHhcCHHHHHHHHhhhHHHhCCCeeeeehhhcccHH
Confidence 89999999999999999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCC-CCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHH-IDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~-~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
+||++++|.++.+|.+..|+.+.+|.+.+.. ++++. ++.++++++++++++++++|++|+++||||+|++|++|++++
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HcCCeeecCCCCCCccCCCCCchhhhhhccCCcCcccchHHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcc
Confidence 9999999999999998889999999877774 67766 999999999999999999999999999999999999998899
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
++.+++.+|+++||.+|++|++++|.++.|+++|+++|||.|+++|+|++-+++..|++|..||.+++++.+++.+++.|
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p 244 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP 244 (352)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764544
Q ss_pred EEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEE
Q 015201 291 IVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHIL 368 (411)
Q Consensus 291 ~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIl 368 (411)
++|.|++.. +++.+.+.|+|++++|+.++++++++..|++.+++||+||.+|++++|+|+++++++|+.+.+ .||||
T Consensus 245 -ii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If 323 (352)
T COG0407 245 -VIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF 323 (352)
T ss_pred -EEEECCCcHHHHHHHHhcCCcEEeeccccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCcee
Confidence 789999988 689999999999999999999999999999899999999977889999999999999999987 59999
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
++||+|+|+||+||+++|++++++|+..
T Consensus 324 nlGhGI~P~tp~e~v~~lve~v~~~~~~ 351 (352)
T COG0407 324 NLGHGILPETPPENVKALVEAVHEYSRE 351 (352)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999864
No 4
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=100.00 E-value=9.5e-71 Score=544.46 Aligned_cols=335 Identities=44% Similarity=0.845 Sum_probs=316.6
Q ss_pred HHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCC
Q 015201 57 LLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGV 136 (411)
Q Consensus 57 Rv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~ 136 (411)
|++++++|+++||+|||+|+++|+|+|+|++++.+.+++.|++.||+++++++++++++||+|++++++|+.++++|||+
T Consensus 1 ~~~~~~~g~~~dr~Pv~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~d~~~~~ea~G~ 80 (338)
T TIGR01464 1 LFLRAAKGEEVDRPPVWLMRQAGRYLPEYRELRAKAPDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPLQALGL 80 (338)
T ss_pred ChhHHhCCCCCCCCCeeeehhcccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccccccHHHcCC
Confidence 57899999999999999999999999999999888767999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHH
Q 015201 137 PFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTI 215 (411)
Q Consensus 137 ~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~ 215 (411)
++.|+++.+|++.+++++.+|+++|+.++++. ++.++++++++++++++++|++++++||||++++|+||++.++++++
T Consensus 81 ~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~ 160 (338)
T TIGR01464 81 DVDFVEGKGPVIPEPIRTPEDVERLKEFDPESELPYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKA 160 (338)
T ss_pred eeEecCCCCCccCCCCCCHHHHHhcCCCChhhchHHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHH
Confidence 99999888897788899999999999887765 99999999999999999999999999999999999987677889999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
+++++++||.+|++++.+++.+++|+++++|+|+|+++++|+|+++|||++|+||++||++|+++.++++.++.+ ++|.
T Consensus 161 ~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~-ilh~ 239 (338)
T TIGR01464 161 KRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVP-VILF 239 (338)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998733544 7899
Q ss_pred cCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCC
Q 015201 296 NGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLGHG 373 (411)
Q Consensus 296 CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~ 373 (411)
||++. .++++.++|++++++|+.+|+.++++.+|++++++||+||..|+||+|+|+++|+++|+.+++ +||||++||+
T Consensus 240 cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~ 319 (338)
T TIGR01464 240 AKGAGHLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHG 319 (338)
T ss_pred eCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCc
Confidence 99887 689999999999999999999999999999999999999977789999999999999999864 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 015201 374 VLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~ 392 (411)
+|++||+|||+||++++|+
T Consensus 320 i~~~tp~eni~a~v~a~~~ 338 (338)
T TIGR01464 320 ILPDTPPENVKALVEYVHS 338 (338)
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999974
No 5
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=100.00 E-value=1.7e-69 Score=535.07 Aligned_cols=331 Identities=44% Similarity=0.832 Sum_probs=312.3
Q ss_pred HHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCeee
Q 015201 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFD 139 (411)
Q Consensus 60 ~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~~ 139 (411)
+|++|+++||||+|++.++|+|+|+|++++.++ ++.+++.|||++++++++++++||+|++++++|+.+++||||+++.
T Consensus 2 ~a~~g~~~DriPv~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~ 80 (335)
T cd00717 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDVE 80 (335)
T ss_pred ccccCCCCCCCCeeeehhcccccHHHHHHHccC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHcCCeEE
Confidence 689999999999999999999999999999888 7999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHH
Q 015201 140 IEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSM 218 (411)
Q Consensus 140 ~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~ 218 (411)
|+++.+|.+.+++++.+|+++++.+++.. ++.++++++++++++++++|++++++||||++++|+|+++.++|++++++
T Consensus 81 ~~~~~~p~~~~~i~~~~d~~~~~~~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~ 160 (335)
T cd00717 81 FVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKM 160 (335)
T ss_pred eCCCCCCcCCCCCCCHHHHHhccCCChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHH
Confidence 99877887788899999999988777666 99999999999999999999999999999999999986566788999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC
Q 015201 219 CHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN 298 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~ 298 (411)
++++||.+|++++.+++.+++++++++|+|+|+|+++|+++++|||++|+||++||+||+++.+++++|+.+ ++|.||+
T Consensus 161 l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~cg~ 239 (335)
T cd00717 161 MYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVP-VILFAKG 239 (335)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999854554 6788887
Q ss_pred cc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCC
Q 015201 299 GG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLGHGVLV 376 (411)
Q Consensus 299 ~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~ 376 (411)
.. +++++.++|++++++|+.+|+.++++.+|++++++||+||..|.+++|+|+++|+++|+.+++ +||||++||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~ 319 (335)
T cd00717 240 AGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILP 319 (335)
T ss_pred CHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCC
Confidence 76 689999999999999999999999999999999999999987778999999999999999986 8999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 015201 377 GTPEEAVAHFFEVGKS 392 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~~ 392 (411)
+||+|||+||++++|+
T Consensus 320 ~tp~eNi~a~v~a~~~ 335 (335)
T cd00717 320 DTPPENVKALVEAVHS 335 (335)
T ss_pred CcCHHHHHHHHHHHhC
Confidence 9999999999999974
No 6
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-70 Score=503.05 Aligned_cols=345 Identities=44% Similarity=0.828 Sum_probs=334.4
Q ss_pred CCCCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccc
Q 015201 50 SSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILT 129 (411)
Q Consensus 50 ~~~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~ 129 (411)
.+.+|++.+++|.+|+++||+|||+|+|+|||+|+|+++++++ +|.+.|+|||...|.++++.++|..|++++++|+++
T Consensus 7 fp~~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILv 85 (359)
T KOG2872|consen 7 FPALKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILV 85 (359)
T ss_pred CCCCCchHHHHHhcCcccCCCchHHHHHhhcccHHHHHHHHhc-cHHHhcCCccceeeEecchhhccCCceeEEeecccc
Confidence 4578999999999999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred ccccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc--hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCC
Q 015201 130 PLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK--LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGG 207 (411)
Q Consensus 130 ~~ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~--~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~ 207 (411)
++.|||..+.+.++.||++..|+.+++|++++..+++.. ++++.+|++++|.++++++|++||+++|||++++++.|+
T Consensus 86 ipqalgm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGG 165 (359)
T KOG2872|consen 86 IPQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGG 165 (359)
T ss_pred CchhcCceEEEeeccCCCCCCCCCCHHHHHHhccCcchhhhcchHHHHHHHHHHHhcCccceeeecCCchhhheeeecCC
Confidence 999999999999999999999999999999998766543 899999999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 015201 208 TTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP 287 (411)
Q Consensus 208 ~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~ 287 (411)
++++|...-.|++..||..|++|+++|+.+++|+..|+++||..++++|+|++-+||++|+||++||+++|+++++++.+
T Consensus 166 gSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~ 245 (359)
T KOG2872|consen 166 GSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLP 245 (359)
T ss_pred CchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC-----CEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC
Q 015201 288 ET-----PIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 288 g~-----~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~ 362 (411)
.. |++++.-|+...|+.++++|+|++++|+.+|+.+++++.|++++++||+||..|+|++|+|.+.++++++.+|
T Consensus 246 ~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 246 ELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred hhcCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 77 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+.+||++.||++-++||+|++..|+|++|++++
T Consensus 326 ~~ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~~ 358 (359)
T KOG2872|consen 326 KSRYIANLGHGITPGTPPEHVAHFVEAVHKIGY 358 (359)
T ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999985
No 7
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=100.00 E-value=5.5e-68 Score=525.98 Aligned_cols=332 Identities=32% Similarity=0.565 Sum_probs=278.2
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
|||||++++++|+++||||||++++++++++.|.....+. ++.+++.|++++++++++++++||+|++.+++|..++++
T Consensus 1 T~~er~~~~~~~~~~DrvPv~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~~d~~~~ae 79 (343)
T PF01208_consen 1 TSRERVLAALNGEPVDRVPVWPMRQAGRYLPEYAAEKTGI-SFPEYCRDPEKMAEAQIKAYEKFGPDFIKIPFDLTVEAE 79 (343)
T ss_dssp -S--HHHHHHTT---SS--B--TTSSSTTSHHHHHHHHHS-SHHHHCTSHHHHHHHHHHHHHHC--SEEE-S--TTHHHH
T ss_pred CchhHHHHHHcCCCCCCcCeEccccccccChHHHHHhcCc-chHHHhcCHHHHHHHHHHHHHhcCCCEEEecCceeehHH
Confidence 7899999999999999999999888888888776655566 699999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCCCCcc--c-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHH---cC
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE--K-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIV---EG 206 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~--~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~---gg 206 (411)
+||+++.++++.+|.+.+++.+++|+++|+.+++. . ++.++++++++++++++++|+++++.|||++++.|+ |
T Consensus 80 a~G~~v~~~~~~~P~~~~~~~~~eD~~~l~~~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g- 158 (343)
T PF01208_consen 80 ALGCEVEFPEDDGPSVEEPIISPEDLDKLKIPDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRG- 158 (343)
T ss_dssp GCTTEEEEETTTEEEESS---SHHHHHTS--GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-
T ss_pred HcCCeEEecCCCCCccccCcCCHHHHhhhcccCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCC-
Confidence 99999999998889876654499999999999873 3 899999999999999999999999999999999999 6
Q ss_pred CCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 015201 207 GTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC 286 (411)
Q Consensus 207 ~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~ 286 (411)
+++++++|+++||.++++++++++.+++++++++++|+|+|+++|.++++|||++|+||++||+||+++.+|++
T Consensus 159 -----~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~- 232 (343)
T PF01208_consen 159 -----FEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEA- 232 (343)
T ss_dssp ------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHH-
T ss_pred -----HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 68999999999999999999999999999999999999999999977789999999999999999999999998
Q ss_pred CCC-CEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCc-CccCCCHHHHHHHHHHHHHH-hC
Q 015201 287 PET-PIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACLFSPLPALTDEIQRVVKC-AG 362 (411)
Q Consensus 287 ~g~-~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~-~~L~gt~eeV~~ev~~~i~~-~~ 362 (411)
|. ++++|+||++. .++.+.++|+|++++++.+|+.++++++|++++++||+|| ..|.||+|+|+++|+++|+. .+
T Consensus 233 -g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~ 311 (343)
T PF01208_consen 233 -GKDPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLA 311 (343)
T ss_dssp -ETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHC
T ss_pred -CCCceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcC
Confidence 56 89999999997 7899999999999999999999999999999999999999 45569999999999999995 55
Q ss_pred -CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 363 -SRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 363 -~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++||||++||++|++||+||++||++++|+|
T Consensus 312 ~~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 312 GGGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp TSSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999998
No 8
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=100.00 E-value=2.5e-65 Score=506.18 Aligned_cols=328 Identities=24% Similarity=0.356 Sum_probs=301.1
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
=|++||++++++|+++||+|||+++++|++ +|.+++. . ++.|++.||+.+++++++++++||+|++++++|+.+++
T Consensus 3 mt~~er~~~~~~g~~~dr~Pv~~~~~~g~~--e~~~~~g-~-~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~a 78 (339)
T PRK06252 3 LTPKERLLNALKGKEVDRVPVICVTQTGTV--ELMDITG-A-YWPEAHSDPEKMADLAIAGYEVAGFEAVRVPFCMTVEA 78 (339)
T ss_pred CCHHHHHHHHHCCCCCCccCccchhhhHHH--HHHHHcC-C-CchhccCCHHHHHHHHHHHHHhcCCCeeccCcchHHHH
Confidence 378999999999999999999999998876 5655443 4 69999999999999999999999999999999999999
Q ss_pred ccCCCeeeecC-CCCCc-cCCCCCChhhhhcCCCCCcc-c-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCC
Q 015201 132 PAFGVPFDIEE-VRGPV-IQSPIRSEEGLKALHHIDLE-K-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGG 207 (411)
Q Consensus 132 ea~G~~~~~~~-~~~p~-~~~pi~~~eD~~~l~~~d~~-~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~ 207 (411)
++||+++.|.+ +.+|. .++++++.+|+.+++.++.+ . ++.++++++++++++++++|++++++||||++++++|
T Consensus 79 ea~G~~v~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g-- 156 (339)
T PRK06252 79 EAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMG-- 156 (339)
T ss_pred HHhCCeecCCCCCCCCcccccccccChhhhhcccchhhCccHhHHHHHHHHHHHHcCCcCceeCccCChHHHHHHHHH--
Confidence 99999999974 46886 57889999999999764433 3 9999999999999999899999999999999999997
Q ss_pred CCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhh
Q 015201 208 TTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTK 285 (411)
Q Consensus 208 ~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~ 285 (411)
.++++++++++||.+|++++++++.+++|+++++++|+|+|+++|+|++ ++||++|+||++||++|+++.++++
T Consensus 157 ----~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~ 232 (339)
T PRK06252 157 ----PKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL 232 (339)
T ss_pred ----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 4788999999999999999999999999999999999999999999986 9999999999999999999999863
Q ss_pred CCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCc-Ccc-CCCHHHHHHHHHHHHHHhC
Q 015201 286 CPETPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACL-FSPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 286 ~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~-~~L-~gt~eeV~~ev~~~i~~~~ 362 (411)
+.++|+||+.. .++++.++|+|++++++.+|+.++++.+|++++++||+|| ..| .||+|+|+++++++++.
T Consensus 233 ----~~ilH~cG~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~-- 306 (339)
T PRK06252 233 ----PTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED-- 306 (339)
T ss_pred ----CcEEEECCCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc--
Confidence 56899999997 6899999999999999999999999999999999999999 444 69999999999999984
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
|++|+++||+++++||+||++||++++|+||.+
T Consensus 307 -g~~Il~~gcgi~~~tp~enl~a~v~a~~~~~~~ 339 (339)
T PRK06252 307 -GVDILAPGCGIAPKTPLENIKAMVEARKEYYAE 339 (339)
T ss_pred -CCCEEcCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999964
No 9
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00 E-value=4e-65 Score=501.89 Aligned_cols=317 Identities=24% Similarity=0.348 Sum_probs=292.3
Q ss_pred HHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCee
Q 015201 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPF 138 (411)
Q Consensus 59 ~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~ 138 (411)
++|++||++||+|||+++++++ ++|.+.... ++.|++.|||.+++++++++++||+|++++++|+.++++|||+++
T Consensus 1 ~~~~~g~~~dr~Pv~~~~~~~~--~e~~~~~g~--~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~~ea~G~~v 76 (326)
T cd03307 1 LAALNGQPVDRVPVICPTQTGT--VELMEATGA--YWPEAHSDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEALGCEV 76 (326)
T ss_pred CccccCCCCCccCcccchhhHH--HHHHHHhCC--cchhhhcCHHHHHHHHHHHHHHhCCCeeecCCccchHHHhcCCee
Confidence 3689999999999999999887 777666533 599999999999999999999999999999999999999999999
Q ss_pred eecCC-CCCcc-CCCCCChhhhhcCCCCC-ccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHH
Q 015201 139 DIEEV-RGPVI-QSPIRSEEGLKALHHID-LEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTT 214 (411)
Q Consensus 139 ~~~~~-~~p~~-~~pi~~~eD~~~l~~~d-~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~ 214 (411)
.|.++ .+|.+ ++|+++.+|+++++.++ .+. ++.++++++++++++++++|++++++||||++++++| .++
T Consensus 77 ~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g------~~~ 150 (326)
T cd03307 77 DWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG------VEN 150 (326)
T ss_pred ccCCCCCCccccCCCCCCHHHHhhccccccccccHHHHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHh------HHH
Confidence 99865 48976 78899999999886433 233 9999999999999999899999999999999999997 478
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 215 IKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 215 ~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
++++|+++||.+|++++++++.+++|+++++++|+|+|+++|+|++ ++||++|+||++||+||+++.+++ .+++
T Consensus 151 ~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~i 226 (326)
T cd03307 151 FLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG----CPTI 226 (326)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc----CCcE
Confidence 8999999999999999999999999999999999999999999985 889999999999999999999986 3689
Q ss_pred EEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-c-cCCCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 293 LYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-C-LFSPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 293 ~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~-L~gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
+|+||+.. .++.+.++|+|++++|+.+|+.++++.+|++++++||+||. . +.||+|+|+++|+++++. ++|||+
T Consensus 227 lh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~~Il~ 303 (326)
T cd03307 227 LHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLED---GVDILA 303 (326)
T ss_pred EEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cCCEec
Confidence 99999987 68999999999999999999999999999999999999997 4 479999999999999997 369999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHh
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+||++|++||+||++||++++++
T Consensus 304 ~Gc~i~~~tp~env~a~v~a~~e 326 (326)
T cd03307 304 PGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CcCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 10
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=100.00 E-value=6.7e-65 Score=503.24 Aligned_cols=319 Identities=22% Similarity=0.360 Sum_probs=294.2
Q ss_pred CcHHHHHHHHcCCCCCCccc---------ccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEee
Q 015201 53 SSDPLLVKAAKGHPVSRPPA---------WMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVII 123 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv---------~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~ 123 (411)
|++||++++++||++||+|| |+++++|++ +.||+.||+++++++++++++||+|++++
T Consensus 4 t~~er~~~~~~g~~~dr~Pv~~~~~~~~~~~~~~~G~~-------------~~e~~~~~~~~a~~~~~~~~~~~~D~~~~ 70 (340)
T TIGR01463 4 TPKERLFAAVTGQTVDDVPPCVPTQTLTTELMRECGAT-------------WPEAHRDGEAMAHLAIAAYEKFGGEAVRP 70 (340)
T ss_pred CHHHHHHHHhcCCCCCcCCcccchHHHHHHHHHHhCCc-------------chhhcCCHHHHHHHHHHHHHHhCCCeeec
Confidence 78999999999999999999 555555554 55778999999999999999999999999
Q ss_pred ccCcccccccCCCeeeecCCCCCccC-CC-CCChhhhhcCCCCCc-cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHH
Q 015201 124 FSDILTPLPAFGVPFDIEEVRGPVIQ-SP-IRSEEGLKALHHIDL-EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTI 199 (411)
Q Consensus 124 ~~d~~~~~ea~G~~~~~~~~~~p~~~-~p-i~~~eD~~~l~~~d~-~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~ 199 (411)
++|+.++++|||+++.|.++.+|.+. +| +++++|+++++.+|. +. ++.++++++++++++++++|++++++||||+
T Consensus 71 ~~d~~~~aea~G~~i~~~~~~~P~v~~~~~i~~~~d~~~l~~~~~~~~~~~~~l~ai~~l~~~~~~~~pv~g~v~GP~Tl 150 (340)
T TIGR01463 71 PFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIPVVLEAIKILRERYGDTHPIIGPMGGPFTL 150 (340)
T ss_pred CCCcchHHHhcCCeecCCCCCCCccccCCCCCCHHHhccccccCcCCcchhhHHHHHHHHHHHcCCceeeeCCCCcHHHH
Confidence 99999999999999999988789764 47 699999999987753 33 9999999999999999999999999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHH
Q 015201 200 ATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIRE 277 (411)
Q Consensus 200 a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~ 277 (411)
+++|+| .++++++++++||.+|++++.+++.+++++++++++|+|+|+++|++++ ++||++|+||++||+++
T Consensus 151 a~~l~g------~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~ 224 (340)
T TIGR01463 151 AQLMIG------VSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKR 224 (340)
T ss_pred HHHHHC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHH
Confidence 999997 4788999999999999999999999999999999999999999999875 99999999999999999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCc-c-CCCHHHHHHHH
Q 015201 278 IVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPAC-L-FSPLPALTDEI 354 (411)
Q Consensus 278 i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~-L-~gt~eeV~~ev 354 (411)
+++.+++. +.+.++|+||+.. .++.+.++|+|++++|+.+|+.++++.+|++++++||+||.. + .||+|+|++++
T Consensus 225 i~~~i~~~--g~~~ilH~CG~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI~~~v 302 (340)
T TIGR01463 225 LFAYIKEI--GGITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKVKKLA 302 (340)
T ss_pred HHHHHHhc--CCceEEEECCCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHHHHHH
Confidence 99999987 3467899999998 689999999999999999999999999999999999999964 4 59999999999
Q ss_pred HHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 355 QRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 355 ~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+++++. ++|||++||++|++||+||++||++++|+|++
T Consensus 303 ~~~l~~---~~~Il~~gcgi~~~tp~eni~a~v~a~~~~~~ 340 (340)
T TIGR01463 303 KEVLYN---GGDIVMPGCDIDWMTPLENLKAMIEACKSIKY 340 (340)
T ss_pred HHHHHc---CCeEECCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 999984 58999999999999999999999999999984
No 11
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=100.00 E-value=4.8e-61 Score=473.75 Aligned_cols=318 Identities=26% Similarity=0.462 Sum_probs=292.3
Q ss_pred HHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCeee
Q 015201 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFD 139 (411)
Q Consensus 60 ~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~~ 139 (411)
++++|+++||||+|++.+.++ ++|.++ ++.|++.|++++++++++++++|++|++++++|+.+++++||+++.
T Consensus 2 ~a~~g~~~drvPv~~~~~~~~--~~~~g~-----~~~e~~~d~e~~~e~~~~~~~~~~~D~~~~~~d~~~~~ealG~~i~ 74 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGGA--AEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR 74 (330)
T ss_pred chhcCCCCCccceeeeecccc--hhhcCc-----cHHHHhcCHHHHHHHHHHHHHHcCCCeEEeccCccchHHhcCCeEe
Confidence 689999999999999876554 555443 5899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccC-CCCCChhhhhcCCCCCc--cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHH
Q 015201 140 IEEVRGPVIQ-SPIRSEEGLKALHHIDL--EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTI 215 (411)
Q Consensus 140 ~~~~~~p~~~-~pi~~~eD~~~l~~~d~--~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~ 215 (411)
++++.+|.+. +++++.+|++++..+++ +. ++.++++++++++++++++|+++++.||||++.+++| .+++
T Consensus 75 ~~~~~~p~v~~~~~~~~~d~~~~~~~~~~~~~r~~~~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g------~~~~ 148 (330)
T cd03465 75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF 148 (330)
T ss_pred ecCCCCCccccccCCCHHHHhhccCCCcCccchHHHHHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHh------HHHH
Confidence 9988888764 55899999997654333 33 8999999999999999889999999999999999997 5789
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
+++++++||.++++++.+++.+++++++++++|+|+|+++|++++ +|||++|+||++||+||+++.+++. |.++++
T Consensus 149 ~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~l 226 (330)
T cd03465 149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH 226 (330)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEE
Confidence 999999999999999999999999999999999999999999885 7899999999999999999999987 578999
Q ss_pred EecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-cc-CCCHHHHHHHHHHHHHHhCC--CCeEE
Q 015201 294 YINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-CL-FSPLPALTDEIQRVVKCAGS--RGHIL 368 (411)
Q Consensus 294 H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~L-~gt~eeV~~ev~~~i~~~~~--~gfIl 368 (411)
|+||+.. .++.+.++|+|+++++..+|+.++++.+|++++++||+||. .| .||+|+|+++++++|+.+++ +||||
T Consensus 227 H~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il 306 (330)
T cd03465 227 HNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYIL 306 (330)
T ss_pred EECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996 78999999999999999999999999999999999999997 66 59999999999999999875 89999
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
++||++|+++|+|||+||++++|+
T Consensus 307 ~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 307 SSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999985
No 12
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=100.00 E-value=2.7e-57 Score=453.52 Aligned_cols=323 Identities=15% Similarity=0.148 Sum_probs=279.4
Q ss_pred cHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccc--cc
Q 015201 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILT--PL 131 (411)
Q Consensus 54 ~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~--~~ 131 (411)
..||+.++++||++||||+..+ ++.+...|.++ ++.|+++|++++++++.+.+++||+|++.+++++.. ++
T Consensus 5 r~eR~~~~~~g~~~DRvP~~~~--~~~~~~~~~G~-----~~~e~~~d~~~~a~~~~~~~~~~g~D~~~~~~~l~~~~~a 77 (378)
T cd03308 5 RVQRLKDAIEGKKPDRVPILSQ--FTEWFIQYAGM-----TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPPSFY 77 (378)
T ss_pred HHHHHHHHHcCCCCCceeecch--hhHHHHHHcCc-----cHHHHhcCHHHHHHHHHHHHHHcCccccccccccCCchHH
Confidence 4699999999999999998553 23344444333 689999999999999999999999999999999888 79
Q ss_pred ccCCCeeeecCC--CCCcc-CCCCCChhhhhcCCCCCcc---------------------chHHHHHH------------
Q 015201 132 PAFGVPFDIEEV--RGPVI-QSPIRSEEGLKALHHIDLE---------------------KLQFVGDS------------ 175 (411)
Q Consensus 132 ea~G~~~~~~~~--~~p~~-~~pi~~~eD~~~l~~~d~~---------------------~~~~~~ea------------ 175 (411)
++||+++.+.+. ..|.+ .+++++++|++++.. ++. .++.++++
T Consensus 78 ealG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~lpr~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~ 156 (378)
T cd03308 78 QALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIA-DPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNTNG 156 (378)
T ss_pred HHhcccceecCCCCccCcchhhccCCHHHHHHHHh-CHHHHHHHhHhhhhhhhhcccchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999975432 23433 457889999884332 111 24466777
Q ss_pred --HHHHH-HHhCCceeEEEecccHHH-HHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 176 --LKILR-KEVGEHAAVLGFVGAPWT-IATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 176 --ik~l~-~~~~~~~~v~~~~~gPft-~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
+++++ +++|+.+|+.+.+.|||+ +++.|+| +++++++|+++||.+|++|+++++.+++|+++++++|+++
T Consensus 157 ~~~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~g------~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~ 230 (378)
T cd03308 157 PIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLRG------FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPG 230 (378)
T ss_pred HHHHHHHhhccCCccccceeEeCChHHHHHHHhC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888 888888999999999997 8889987 7999999999999999999999999999999999999995
Q ss_pred ---EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc-EEEcCCCCCHHHHHH
Q 015201 252 ---IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD-VIGLDWTVDMADGRK 326 (411)
Q Consensus 252 ---i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d-~l~~d~~~di~~~~~ 326 (411)
++++++|+++|||++|+||++||+||+++.+++. |.++++|+||++. +++++.++|.+ ++++++.+|+.++++
T Consensus 231 ~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~--g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~ 308 (378)
T cd03308 231 PVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR--GQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKE 308 (378)
T ss_pred ceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHH
Confidence 4555668899999999999999999999999986 5789999999998 68999999998 677777799999999
Q ss_pred HhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhC-CCCeEEeCCCCCCCCCc--HHHHHHHHHHHHh
Q 015201 327 RLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAG-SRGHILNLGHGVLVGTP--EEAVAHFFEVGKS 392 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~-~~gfIls~gc~i~~~tp--~Eni~a~~~a~~~ 392 (411)
.+|++++++||+||..| .||+|+|+++|+++|+.++ ++||||++||+++++|| +||++||++++|+
T Consensus 309 ~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~~ 378 (378)
T cd03308 309 KLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred HhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 99999999999999865 5999999999999999998 58999999999999998 9999999999985
No 13
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00 E-value=2.8e-47 Score=371.87 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=264.4
Q ss_pred ccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeec-cCcccccccCCCeeeecCCCCCccC
Q 015201 71 PAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIF-SDILTPLPAFGVPFDIEEVRGPVIQ 149 (411)
Q Consensus 71 Pv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~-~d~~~~~ea~G~~~~~~~~~~p~~~ 149 (411)
|||++++++++.+.|..+ +. ++.+++.|++.+++.....+ ||+|.+..+ +++.+++++||+.+.+.++.+|.+.
T Consensus 1 Pv~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~g~D~~~~~~~~~~~~~ealg~~~~~~~~~~p~v~ 75 (306)
T cd00465 1 PVQCEGQTGIMEASETMA--IS-EEPGETSKAEWGITLVEPEE--IPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CeEEEccCccccHHHHhh--cC-CchhhhCCchhhceeecccc--CCCCeeeecCcceeehhhhcCceEEecCCCCCCCC
Confidence 899999999988876542 22 58899999999999998887 999999999 9999999999999987777677654
Q ss_pred CCCCChhhhhcCCCCCccchHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHH
Q 015201 150 SPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTL 229 (411)
Q Consensus 150 ~pi~~~eD~~~l~~~d~~~~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~l 229 (411)
.+..+. +..+++.++++++.+++.. ++|+++++.||||++.+++|. +.++.+++++|+.++++
T Consensus 76 ~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~GP~Tla~~l~~~------~~~~~~~~~~p~~~~~l 138 (306)
T cd00465 76 EIDEEE---------DPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSMSM------GDALMALYERPEAMHEL 138 (306)
T ss_pred CcccCC---------ChhhHHHHHHHHHHHHhcc--ccceEeecCCHHHHHHHHHcc------cHHHHHHHHChHHHHHH
Confidence 443221 2223788899999999885 689999999999999999983 57789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLER 304 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~ 304 (411)
++.+++.+++++++++++|+|+|++.|++++ ++||++|++|++||+|++++.++.. +.++++|+||+.. .++.
T Consensus 139 l~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~--~~~~~lH~cg~~~~~~~~ 216 (306)
T cd00465 139 IEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAG--EVPIVHHSCYDAADLLEE 216 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhc--CCceEEEECCCHHHHHHH
Confidence 9999999999999999999999999999885 4799999999999999999999875 5688999999976 6899
Q ss_pred HhcCCCcEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcH--H
Q 015201 305 MKGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPE--E 381 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~--E 381 (411)
+.++|+|++++|..+ |+.++++.+|++++++|||+|..+.||+|+|+++++++++.+++ |||+++||++++++|+ |
T Consensus 217 l~~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~~e 295 (306)
T cd00465 217 MIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYKPE 295 (306)
T ss_pred HHHhCcceEecccccCCHHHHHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCcHH
Confidence 999999999999887 99999999999999999999996679999999999999999877 9999999999999999 9
Q ss_pred HHHHHHHHHHh
Q 015201 382 AVAHFFEVGKS 392 (411)
Q Consensus 382 ni~a~~~a~~~ 392 (411)
|++||++++++
T Consensus 296 nl~a~v~a~~~ 306 (306)
T cd00465 296 HLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHhhC
Confidence 99999999985
No 14
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=100.00 E-value=6.5e-39 Score=312.81 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=194.4
Q ss_pred CCChhhhh-cCCCCCccchHHHHHHHH-HHHHHhCCc-eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHH
Q 015201 152 IRSEEGLK-ALHHIDLEKLQFVGDSLK-ILRKEVGEH-AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRT 228 (411)
Q Consensus 152 i~~~eD~~-~l~~~d~~~~~~~~eaik-~l~~~~~~~-~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ 228 (411)
++++.+|. ..+.|+........++.+ .+..--.++ ++.....+|||++++.|+| +++++++|+++||.+|+
T Consensus 75 ~~~~~~w~~~v~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~Gpf~~a~~l~g------~e~~~~~l~~~PE~v~~ 148 (321)
T cd03309 75 VDDITKWKDYVKPPDIQHPLDWQAPARADLQSLDRNDLVIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHE 148 (321)
T ss_pred hHHHHHHHHhccCCCCCCcccchhhhHHHHHhcccccceeccCCCCCHHHHHHHHHH------HHHHHHHHHHCHHHHHH
Confidence 66777774 345555543101111111 111111122 3334456799999999997 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH
Q 015201 229 LLSHLTQAIADYIIYQVES-GAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL 302 (411)
Q Consensus 229 ll~~~~d~~~~~~~~~~e~-G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l 302 (411)
+|+++++.+++|+++++++ |+|+|+++|+|++ +|||++|+||++||+|||++.+|+.+ +.|+++|+||+.. ++
T Consensus 149 lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~~~~l 227 (321)
T cd03309 149 LFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLV 227 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCcHHHH
Confidence 9999999999999999999 9999999999986 69999999999999999999999875 6789999999986 78
Q ss_pred hHHhcCCCcEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCCCC
Q 015201 303 ERMKGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGS-RGHILNLGHGVLVGT 378 (411)
Q Consensus 303 ~~~~e~g~d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~~t 378 (411)
+.+.++|+|++++++.. |+.++++.+|++++++||+||..| . +|+|+|+++|+++++.+++ +|||++++|++|.++
T Consensus 228 ~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~ 307 (321)
T cd03309 228 PSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSI 307 (321)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCccc
Confidence 99999999999999886 999999999999999999999876 4 5689999999999999997 999999999999999
Q ss_pred cHHHHHHHHHH
Q 015201 379 PEEAVAHFFEV 389 (411)
Q Consensus 379 p~Eni~a~~~a 389 (411)
++||++++-+.
T Consensus 308 ~~~~~~~~~~~ 318 (321)
T cd03309 308 FPEVLRRVSAF 318 (321)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 15
>PRK04326 methionine synthase; Provisional
Probab=99.90 E-value=6.6e-23 Score=202.32 Aligned_cols=254 Identities=14% Similarity=0.123 Sum_probs=191.1
Q ss_pred HHhhhhhHHHhCCCEE----------eeccCcccccccCCCeeeecCCC---CCccCCCCCChhhhhcCCCCCccchHHH
Q 015201 106 VQISLQPWEAFHPDGV----------IIFSDILTPLPAFGVPFDIEEVR---GPVIQSPIRSEEGLKALHHIDLEKLQFV 172 (411)
Q Consensus 106 ae~~~~~~~~f~~D~~----------~~~~d~~~~~ea~G~~~~~~~~~---~p~~~~pi~~~eD~~~l~~~d~~~~~~~ 172 (411)
++.....++++|+|.+ ..++....+..++|+.+++.... .|.+..++ ...+ +..
T Consensus 48 ~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~~~~~~~~~~~~~~~P~v~g~~---------~~~~----~~~ 114 (330)
T PRK04326 48 VRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGNNYFRKPSVVGKI---------EYKE----PML 114 (330)
T ss_pred HHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCceeccCceeccccccccCCeEEEec---------cCCC----CCc
Confidence 6677788899999998 44455555566677776643211 13221122 1111 234
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
+++++.+++..++ .++.+.+.||+|++..+.. ++ ..+++|.++ .+.+...++++.+.++|++.|
T Consensus 115 l~~~~~~~~~~~~-~~vk~~l~GP~Tla~~~~~--------~~---y~~~~e~~~----~l~~~~~~~i~~l~~~G~~~i 178 (330)
T PRK04326 115 VDEFEFAKSVTYT-RPVKVPITGPYTIAEWSFN--------EY---YKDKEELVF----DLAKVINEEIKNLVEAGAKYI 178 (330)
T ss_pred HHHHHHHHhcccC-CCceEeccCHHHHHhhccc--------cc---CCCHHHHHH----HHHHHHHHHHHHHHHCCCCEE
Confidence 5666777776644 7889999999999976543 11 123445554 445788888899999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC----CHHHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV----DMADGRK 326 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~----di~~~~~ 326 (411)
++.|+.... +|+.+ +++.++++++++.++ ..+.+|+| |+.. .++.+.++|+|++++|... ++..+++
T Consensus 179 qidEP~l~~-~~~~~-~~~~~~l~~~~~~~~-----~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~ 251 (330)
T PRK04326 179 QIDEPALAT-HPEDV-EIAVEALNRIVKGIN-----AKLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKE 251 (330)
T ss_pred EecCchhhc-CHHHH-HHHHHHHHHHHhCCC-----CEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhc
Confidence 999986653 67777 899999999999772 35789999 8877 5899999999999998755 7788877
Q ss_pred HhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC---CcHHHHHHHHHHHHhcCC
Q 015201 327 RLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG---TPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~---tp~Eni~a~~~a~~~yg~ 395 (411)
..+++..++|+||+... .+++|+|++.++++++.....+++++|+|+++.- ++.+|+++++++++++..
T Consensus 252 ~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a~~~~~ 324 (330)
T PRK04326 252 YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLPREIAYQKLVNMVKATREVRE 324 (330)
T ss_pred cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 65567889999999765 6999999999999999655579999999999766 999999999999998764
No 16
>PRK00957 methionine synthase; Provisional
Probab=99.81 E-value=1.2e-18 Score=170.00 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=149.5
Q ss_pred CceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CCC
Q 015201 185 EHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--GQL 262 (411)
Q Consensus 185 ~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~~i 262 (411)
++.++.+.+.||+|++..+.+ ++++.++ .+++. +..+++...+.++++.++|++.|++.|+.. ++.
T Consensus 106 ~~~~vK~~i~GP~Tla~~~~~-------~~~y~~~-~~~~~----~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~ 173 (305)
T PRK00957 106 PNKGVKGIITGPSTLAYSLRV-------EPFYSDN-KDEEL----IYDLARALRKEAEALEKAGVAMIQIDEPILSTGAY 173 (305)
T ss_pred CCCceeEEecCHHHHHhhccc-------ccccCCc-cHHHH----HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCc
Confidence 567899999999999987653 1122222 33444 444577888888888899999999988743 355
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCC---CCCHHHHHH-HhCCCeeEEcc
Q 015201 263 PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDW---TVDMADGRK-RLGNDISVQGN 337 (411)
Q Consensus 263 Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~---~~di~~~~~-~~g~~~~l~G~ 337 (411)
++ +++.++++++.+.++ ..+.+|+||+.. .++.+.++|+|++++|. ..++..+++ ..+++..++|+
T Consensus 174 ~~----~~~~~~~~~~~~~i~-----~~v~lH~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~Gv 244 (305)
T PRK00957 174 DL----EVAKKAIDIITKGLN-----VPVAMHVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFGC 244 (305)
T ss_pred hH----HHHHHHHHHHHHhhC-----CceEEEECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEEE
Confidence 54 577899999988773 357889999998 57999999999999986 447888874 34567899999
Q ss_pred CCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHhc
Q 015201 338 VDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKSM 393 (411)
Q Consensus 338 vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~y 393 (411)
||+... .+|+|+|++.+++.++..+..+++++|+|++..-+ +.+|+++|++++++|
T Consensus 245 Id~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 245 VDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREI 304 (305)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 999765 69999999999999998866789999999996544 899999999999986
No 17
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=99.65 E-value=1.4e-15 Score=150.31 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=153.3
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecC-CCCCCCHH
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDS-WGGQLPPH 265 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~-~~~~iSp~ 265 (411)
.++.+.+.||+|++..+.+. ... .|.+ .+++++.+++.+.+.++++.++|++.|++.|+ ++.+++++
T Consensus 119 ~~lk~~l~GP~Tla~~~~~~------~~~---~y~~---~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSFVR------FRG---YYPS---REELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred ccccccCCCCeeECCchhhc------ccc---cCCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc
Confidence 56778889999999877641 111 2333 46799999999999999999999999999997 44577777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc----------c-cHhHHhcCCCcEEEcCCCC----CHHHHHHHhC
Q 015201 266 MWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG----------G-FLERMKGTGVDVIGLDWTV----DMADGRKRLG 329 (411)
Q Consensus 266 ~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~----------~-~l~~~~e~g~d~l~~d~~~----di~~~~~~~g 329 (411)
++++..++.+++++.+.+...+..+.+|+| |+. . .++.+.+.++|+++++... ++..+++...
T Consensus 187 -~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~ 265 (332)
T cd03311 187 -PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPY 265 (332)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCC
Confidence 899999999999999986433567899999 776 4 5799999999999987643 6788877555
Q ss_pred CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC---CcHHHHHHHHHHHH
Q 015201 330 NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG---TPEEAVAHFFEVGK 391 (411)
Q Consensus 330 ~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~---tp~Eni~a~~~a~~ 391 (411)
++..+.|.||+... ..|+|+|++.++++++..+...++++|+|+++.. .-...+++|.++++
T Consensus 266 ~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 67889999999765 6999999999999999887667999999998643 34566666666553
No 18
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=99.48 E-value=1.3e-12 Score=128.36 Aligned_cols=192 Identities=17% Similarity=0.109 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.++++.+++..++.+++.+.+.||||++..+.+. +. .|+..+++++.+++...++++++.++|++.|
T Consensus 102 ~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~------~~-------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~i 168 (321)
T cd03310 102 LDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLP------NG-------EPDAYEDLAKSLAEFLREQVKELKNRGIVVV 168 (321)
T ss_pred HHHHHHHHHhcCCCCceEEEecCHHhHhHhhccc------cC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 4566666666666678899999999999888762 11 1788899999999999999999999999999
Q ss_pred EEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCCC-------HHH
Q 015201 253 QIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVD-------MAD 323 (411)
Q Consensus 253 ~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~d-------i~~ 323 (411)
++.|+..+ ..| .++..++.+++++.+++.. +..+.+|+||+ ..++.+.++|+|++++|.... +..
T Consensus 169 qidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~-~~~~~lHic~~-~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~ 242 (321)
T cd03310 169 QIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKS-GGDVEVHLCAP-LDYEALLELGVDVIGFDAAALPSKYLEDLKK 242 (321)
T ss_pred EeCCCcccccccc----ccchHHHHHHHHHHHhhcc-CCceEEEECCC-CCHHHHHhCCCCEEEEecccCcccchhHHHH
Confidence 99998553 556 6778899999999997622 33468999999 667899999999999987543 344
Q ss_pred HHHHh-CCCeeEEccCCcC----ccCCCHHHHHHHHHHHHHHhC---CCCeEEeCCCCCCCCCcHHHHHH
Q 015201 324 GRKRL-GNDISVQGNVDPA----CLFSPLPALTDEIQRVVKCAG---SRGHILNLGHGVLVGTPEEAVAH 385 (411)
Q Consensus 324 ~~~~~-g~~~~l~G~vd~~----~L~gt~eeV~~ev~~~i~~~~---~~gfIls~gc~i~~~tp~Eni~a 385 (411)
+.+.. +++..-.|-+|.. .....+|.+ +...+.++..+ +...+++|+|++.. .|.+-.+.
T Consensus 243 ~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~vtpscgL~~-~p~~~a~~ 310 (321)
T cd03310 243 LLRIGVRTLILGLVVTDNEAKGRNAWKEIERL-EKLVRRLEEPGEVLDEILYLTPDCGLAF-LPPQEARR 310 (321)
T ss_pred HHhcCCceEEEEeeecCCcccCCCHHHHHHHH-HHHHHHhccchhhhhhceeeCCCccCCC-CCHHHHHH
Confidence 43422 3333445666773 111112233 44444454443 24699999999853 44443333
No 19
>PRK01207 methionine synthase; Provisional
Probab=99.29 E-value=2.3e-10 Score=112.07 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=145.1
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVES------ 247 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~------ 247 (411)
+-++.+++.. +.|+-+.+.||+|++.+... ..|.+. .+++..++..+.+-++.+.++
T Consensus 108 ~e~~~a~~~t--~kpvK~~ltGP~Ti~~~S~~------------~~Y~~~---~el~~~iA~al~~Ev~~L~~a~~~~~~ 170 (343)
T PRK01207 108 DEVEFVADNT--KKPIKVPITGPYTMMDWSFN------------DFYRDR---YDLAMEFARIINEELKDIKSAWDRKSP 170 (343)
T ss_pred HHHHHHHHcc--CCCcEEEecCHHHHHHHhcc------------cccCCH---HHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3334444443 36789999999999987653 245555 355566777888888899999
Q ss_pred CCC-EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-C-Ccc-cHhHHhcCCCcEEEcCCCC----
Q 015201 248 GAH-CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-G-NGG-FLERMKGTGVDVIGLDWTV---- 319 (411)
Q Consensus 248 G~d-~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G-~~~-~l~~~~e~g~d~l~~d~~~---- 319 (411)
|++ .|++-+|.-. ....+.++....++..++.+. ..+.+|.| | +.. +++.+.++.+|+++++...
T Consensus 171 G~~~~IQiDEPal~--~~~~~l~~av~a~n~~~~gv~-----~~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~ 243 (343)
T PRK01207 171 GRKLEIQIDEPATT--THPDEMDIVVDSINKSVYGID-----NEFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTL 243 (343)
T ss_pred CCceEEEEeCCCcC--CChHHHHHHHHHHHHHHhCCC-----CcEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCccc
Confidence 887 7999887543 234566777777777777774 24789999 7 455 5799999999999886531
Q ss_pred -------------CHHHHHHHh----CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhC-CCCeEEeCCCCC---CCC
Q 015201 320 -------------DMADGRKRL----GNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAG-SRGHILNLGHGV---LVG 377 (411)
Q Consensus 320 -------------di~~~~~~~----g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~-~~gfIls~gc~i---~~~ 377 (411)
++..+++.. .++..-.|-+|...- .-++|+|++.+++.++..+ +...+++|+|++ +..
T Consensus 244 ~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~ 323 (343)
T PRK01207 244 EPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSRE 323 (343)
T ss_pred ccccccccccchhHHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHH
Confidence 333343321 133456788999864 5899999999999999985 589999999997 456
Q ss_pred CcHHHHHHHHHHHHhcC
Q 015201 378 TPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 378 tp~Eni~a~~~a~~~yg 394 (411)
.-.+.+++|+++++++.
T Consensus 324 ~a~~KL~~mv~aa~~~r 340 (343)
T PRK01207 324 IGEQKLRNMVAAKNNIL 340 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66789999999999876
No 20
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.17 E-value=1.5e-09 Score=107.00 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=139.5
Q ss_pred eEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-C-CCCHH
Q 015201 188 AVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-G-QLPPH 265 (411)
Q Consensus 188 ~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~-~iSp~ 265 (411)
++-..+.||+|++....+ ..|.+ ..+++..+++.+.+.++++.+ |++.|++-|+.- . -++ +
T Consensus 129 ~~K~vl~GP~T~~~~s~~------------~~Y~~---~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~-~ 191 (326)
T PRK08575 129 KLKAVLPGPLTYAVLSDN------------EYYKN---LIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK-R 191 (326)
T ss_pred CccEEEecHHHHHHHhcc------------ccCCC---HHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC-H
Confidence 567788999998864322 12333 356777888888888888888 999999999865 4 343 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc--ccHhHHhcCCCcEEEcCCC---CCHHHHHHHhCCCeeEEccCC
Q 015201 266 MWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG--GFLERMKGTGVDVIGLDWT---VDMADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 266 ~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~--~~l~~~~e~g~d~l~~d~~---~di~~~~~~~g~~~~l~G~vd 339 (411)
.+.+.....++++.+.+ +.++.+|.| |.. ..++.+.++++|++++|.. -++..+.+.+.++....|-||
T Consensus 192 ~~~~~~~~a~~~~~~~~-----~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~GviD 266 (326)
T PRK08575 192 DTLEKLPEVYKTMAKNV-----NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGILN 266 (326)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEEe
Confidence 46677777888887766 246889999 752 3579999999999998752 246667665656667789999
Q ss_pred cCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHHHHHHHHHHHHhc
Q 015201 340 PACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 340 ~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~Eni~a~~~a~~~y 393 (411)
-..- .-|+|+|++.+++.++ .++...+++|+|++ |..+-.+++++|+++ ++.
T Consensus 267 ~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 267 ARNTKMEKISTIRRIVNKVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 9764 5899999999999999 66689999999996 567778999999988 554
No 21
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.14 E-value=1.9e-09 Score=106.71 Aligned_cols=197 Identities=11% Similarity=0.147 Sum_probs=137.5
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +.++-+++.||.+++..+.. ..|.+. .+++.-+++.+.+.++++.++|++.|+
T Consensus 112 ~~~~~~~~~~--~~~vK~~ipgP~tl~~~~~~------------~~Y~~~---~el~~dlA~al~~Ei~~L~~aG~~~IQ 174 (339)
T PRK09121 112 EDAKFLRQQT--TQPIKWALPGPMTMIDTLYD------------DHYKSR---EKLAWEFAKILNQEAKELEAAGVDIIQ 174 (339)
T ss_pred HHHHHHHhcc--CCCceEEeCcHHHHHHHhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3444455443 24578889999999865542 235554 456677777888889999999999999
Q ss_pred EecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc------------------c-cHhHHhcCCCcE
Q 015201 254 IFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG------------------G-FLERMKGTGVDV 312 (411)
Q Consensus 254 i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~------------------~-~l~~~~e~g~d~ 312 (411)
+-|+.-+ +.+ ...++....+.++++.+ ..++.+|+| |+. . .++.+.++++|.
T Consensus 175 iDeP~l~~~~~--~~~~~~v~~~n~~~~g~-----~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~ 247 (339)
T PRK09121 175 FDEPAFNVFFD--EVNDWGVAALERAIEGL-----KCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDI 247 (339)
T ss_pred ecccHHhhhhH--HHHHHHHHHHHHHHcCC-----CCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCCE
Confidence 9887443 332 22333333334444333 245788999 753 2 358888999999
Q ss_pred EEcCCCCC--HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHH
Q 015201 313 IGLDWTVD--MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHF 386 (411)
Q Consensus 313 l~~d~~~d--i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~ 386 (411)
+.++...+ -.+..+.+.++....|-||...- .-++|+|++.+++.++..+....+++|+|++.. ..-.+++++|
T Consensus 248 ~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l 327 (339)
T PRK09121 248 ISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNAL 327 (339)
T ss_pred EEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHH
Confidence 98864321 12333444556677899999864 589999999999999998768999999999753 4457899999
Q ss_pred HHHHHhcC
Q 015201 387 FEVGKSMK 394 (411)
Q Consensus 387 ~~a~~~yg 394 (411)
+++++...
T Consensus 328 ~~~a~~~~ 335 (339)
T PRK09121 328 SAGAEIVR 335 (339)
T ss_pred HHHHHHHH
Confidence 99888765
No 22
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.10 E-value=9.3e-09 Score=99.54 Aligned_cols=208 Identities=14% Similarity=0.097 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGA 249 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~ 249 (411)
..+-+..+..+++.|...++-+.+.||+|++.+..++ . .|.+- .+.+..-+..++.+.++.+.++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~-------~----~Y~d~--~~~la~~ia~~l~~e~~~l~~~gv 160 (344)
T PRK06052 94 EAIEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGG-------T----IYTDI--LLILAKSVERFVENAIKSAKNFKI 160 (344)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCC-------c----cccch--HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444555667888888888999999999999999873 1 12221 245666677777788888889999
Q ss_pred CEEEEecCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccH-hHHhcCC-CcEEEcCCCC---CHHH
Q 015201 250 HCIQIFDSWGGQLPP-HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFL-ERMKGTG-VDVIGLDWTV---DMAD 323 (411)
Q Consensus 250 d~i~i~D~~~~~iSp-~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l-~~~~e~g-~d~l~~d~~~---di~~ 323 (411)
+.|++-+|.-+.-.+ ....+.+...+..+...+...|-++++.+|+ .++ +.+.+++ +|+++++... ++.-
T Consensus 161 ~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~----~l~~~~i~~~~~idvi~~E~A~~~~~L~~ 236 (344)
T PRK06052 161 KTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS----PLYYELICETPGINVIGVESAATPSYLDL 236 (344)
T ss_pred CEEEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh----HhhHHHHhcCCCCCEEeeeccCChHHHHH
Confidence 999999986652111 1122444444444433333222245556677 456 8889998 9999986532 4444
Q ss_pred HHHH----hCCCeeEEccCCc--C------------------------c-cCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 324 GRKR----LGNDISVQGNVDP--A------------------------C-LFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 324 ~~~~----~g~~~~l~G~vd~--~------------------------~-L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
+.+. + ++..-.|-+|. . . -.-|+|||.+.+++.++...+..+.++|+|
T Consensus 237 l~~~~~e~~-dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDC 315 (344)
T PRK06052 237 IDKKVLEDT-DTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDC 315 (344)
T ss_pred Hhhhhhhhc-CCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCC
Confidence 4443 3 34555688887 3 1 126899999999999999988999999999
Q ss_pred CCCC----CCcHHHHHHHHHHHHhcCC
Q 015201 373 GVLV----GTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 373 ~i~~----~tp~Eni~a~~~a~~~yg~ 395 (411)
|+-. ....+.++.|+++++.+..
T Consensus 316 GLK~~~e~~~A~~KL~nmv~aa~~~r~ 342 (344)
T PRK06052 316 GLGSWPSQELAFRLLENVAKAINEFRA 342 (344)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 9852 3346889999999988764
No 23
>PRK06233 hypothetical protein; Provisional
Probab=99.08 E-value=4e-09 Score=105.71 Aligned_cols=210 Identities=15% Similarity=0.061 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
++..+.+++..++..++..++.||.+++..... ......|.+. ++++.-+++.+.+.++++.++|++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~~--------~~~~~~Y~~~---eel~~dlA~a~~~Ei~~L~~aG~~~I 188 (372)
T PRK06233 120 FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNRS--------DNWPKFYDSW---DDYLDDLAQAYHDTIQHFYDLGARYI 188 (372)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcHHhccCccc--------ccccccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 355566666544455678889999988731110 1112356555 46778888888899999999999999
Q ss_pred EEecCC-CCCCC--------H---HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-----------cHhHHhcC
Q 015201 253 QIFDSW-GGQLP--------P---HMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-----------FLERMKGT 308 (411)
Q Consensus 253 ~i~D~~-~~~iS--------p---~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-----------~l~~~~e~ 308 (411)
++-|+. +.+.+ | +.+.++...+.+-+-..++..-.+..+.+|.| ||.. .++.+.++
T Consensus 189 QiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~ 268 (372)
T PRK06233 189 QLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL 268 (372)
T ss_pred EEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhC
Confidence 999874 32222 1 12444444444333333432211445788999 8763 35888999
Q ss_pred CCcEEEcCCCC----CHHHHHHHhC---CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-----
Q 015201 309 GVDVIGLDWTV----DMADGRKRLG---NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL----- 375 (411)
Q Consensus 309 g~d~l~~d~~~----di~~~~~~~g---~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~----- 375 (411)
++|.+.++... ++.-+++... ++.+..|-||...- .-++|+|++.+++.++......++++|+|++.
T Consensus 269 ~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g 348 (372)
T PRK06233 269 NYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEG 348 (372)
T ss_pred CCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCcccccc
Confidence 99999886532 3444444432 46678899999864 58999999999999998866899999999976
Q ss_pred ----CCCcHHHHHHHHHHHHhc
Q 015201 376 ----VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 376 ----~~tp~Eni~a~~~a~~~y 393 (411)
...-.++++.|.+.+++.
T Consensus 349 ~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 349 NILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 233457888888888764
No 24
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=99.01 E-value=1.1e-08 Score=102.37 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=134.7
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +..++..++.||.+++....+. ......|.+. .+++.-+++...+.++++.++|++.|+
T Consensus 120 ~~~~~l~~~~-~~~~~K~~ipgP~~l~~~~~~~-------~~~~~~Y~~~---~~~~~dlA~al~~Ei~~L~~aG~~~IQ 188 (368)
T PRK06520 120 EDFRFLKSIS-GDATPKMTIPSPSVLHFRGGRK-------AIDATVYPDL---DDYFDDLAKTWRDAIKAFYDAGCRYLQ 188 (368)
T ss_pred HHHHHHHhhc-cCCCCCEEcCcHHHHHhhcccc-------ccchhcCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4455555543 3345678899999988442210 0112356665 466777888888899999999999999
Q ss_pred EecCC-CCCCCHHHHHHH---------HHHHHHHHHHHHHhhCC-CCCEEEEec-CCcc-----------cHhHH-hcCC
Q 015201 254 IFDSW-GGQLPPHMWEQW---------SEPYIREIVSLVRTKCP-ETPIVLYIN-GNGG-----------FLERM-KGTG 309 (411)
Q Consensus 254 i~D~~-~~~iSp~~f~ef---------~~Py~k~i~~~i~~~~~-g~~~~~H~C-G~~~-----------~l~~~-~e~g 309 (411)
+-|+. +.++++++...+ ....+.++++.+-+.-| +..+.+|+| |+.. .++.+ .+++
T Consensus 189 iDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~ 268 (368)
T PRK06520 189 LDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVN 268 (368)
T ss_pred ecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcC
Confidence 99874 456665432111 11111133333222111 344677999 8852 35774 5799
Q ss_pred CcEEEcCCCCC----HHHHH--HHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC------
Q 015201 310 VDVIGLDWTVD----MADGR--KRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV------ 376 (411)
Q Consensus 310 ~d~l~~d~~~d----i~~~~--~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~------ 376 (411)
+|.+.++...+ +..++ .. +++.+..|-||...- .-++|+|++.+++.++.......+++|+|++..
T Consensus 269 vd~~~lE~~~~r~g~~e~L~~l~~-~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~ 347 (368)
T PRK06520 269 VDAFFLEYDNERAGGFEPLRFIPP-GHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNS 347 (368)
T ss_pred CCeEEEEeccCCCCCcchHHHhhh-cCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCC
Confidence 99998764321 22222 22 235677899999864 589999999999999998767899999999762
Q ss_pred ---CCcHHHHHHHHHHHHh
Q 015201 377 ---GTPEEAVAHFFEVGKS 392 (411)
Q Consensus 377 ---~tp~Eni~a~~~a~~~ 392 (411)
..-.++++.|.+++++
T Consensus 348 l~~~~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 348 LSEEQQWAKLRLVVEIANE 366 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3345778888888876
No 25
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=98.97 E-value=1.9e-08 Score=109.12 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=143.8
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +.++-+++.||.|++.+... +.+ .+ -.+++..++..+.+.++.+.++|++.|+
T Consensus 537 ~~~~~aq~~t--~~~vK~~ltGP~T~~~~s~~----r~~--------~~---~~e~~~dlA~al~~Ev~~L~~aG~~~IQ 599 (758)
T PRK05222 537 EWIKYAQSLT--DKPVKGMLTGPVTILNWSFV----RDD--------QP---REETARQIALAIRDEVLDLEAAGIKIIQ 599 (758)
T ss_pred HHHHHHHhcc--CCCCcEEEecHHHHHHHHhc----ccC--------CC---HHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3344444433 24688899999998865432 100 11 2566777888888889999999999999
Q ss_pred EecCCC--CC----CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CC-H
Q 015201 254 IFDSWG--GQ----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VD-M 321 (411)
Q Consensus 254 i~D~~~--~~----iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~d-i 321 (411)
+-|+.- ++ ...+.|.++....++..++.+.. +..+.+|.| |+.. +++.+.++++|+++++.. ++ +
T Consensus 600 iDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~---~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L 676 (758)
T PRK05222 600 IDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELL 676 (758)
T ss_pred eeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCC---CCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhH
Confidence 998743 22 23556777776666666665542 355789999 8877 679999999999998753 22 2
Q ss_pred HHHHHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHHhcC
Q 015201 322 ADGRKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 322 ~~~~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~~~a~~~yg 394 (411)
..+.+ .+ ++....|-+|...- .-++|+|++.+++.++......++++|+||+-. ..-...++.|++++++..
T Consensus 677 ~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r 753 (758)
T PRK05222 677 DAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELR 753 (758)
T ss_pred HHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33322 22 34577899999865 589999999999999998778999999999853 444678888999998875
No 26
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=98.95 E-value=3.9e-08 Score=106.27 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=140.4
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CC---
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--GQ--- 261 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~~--- 261 (411)
.|+-+++.||.|++.+..- +. +. + -++++.-++..+.+.++.+.++|++.|++-|+.- ++
T Consensus 553 ~~vK~~ltGP~Ti~~~s~~----r~--------~~-~--~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~ 617 (766)
T PLN02475 553 RPMKGMLTGPVTILNWSFV----RN--------DQ-P--RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 617 (766)
T ss_pred CccceEEecHHHHHhhhhc----cc--------CC-C--HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcC
Confidence 4788999999998865432 10 11 1 3567778888888889999999999999998743 21
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-C---HHHHHHHhC-CCee
Q 015201 262 -LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-D---MADGRKRLG-NDIS 333 (411)
Q Consensus 262 -iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-d---i~~~~~~~g-~~~~ 333 (411)
...+.|.+++...++...+.++. +..+.+|+| |+.. +++.+.++.+|+++++..- + +..+++.++ ++.+
T Consensus 618 ~~~~~~~l~~av~af~~~~~~v~~---~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~I 694 (766)
T PLN02475 618 KSEHAFYLDWAVHSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (766)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCC---CCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeE
Confidence 23445666665555555555542 345788999 8877 6799999999999987532 2 455545232 3456
Q ss_pred EEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHHhcCC
Q 015201 334 VQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 334 l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~~~a~~~yg~ 395 (411)
..|-+|...- .-++|+|++.+++.++..+...++++|+||+-. ..-.+.++.|+++++....
T Consensus 695 glGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r~ 760 (766)
T PLN02475 695 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRA 760 (766)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999865 589999999999999999778999999999853 3445788899999988763
No 27
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=98.92 E-value=7.5e-08 Score=96.09 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
.++..+.+++. + .++-.++.||+|++..... + .-|.++ .++++.++....+.++.+.++|++.
T Consensus 136 ~l~~~~~a~~~-~--~~~K~~i~GP~T~~~ls~~-------~----~~Y~~~---~el~~dla~~y~~el~~L~~aG~~~ 198 (360)
T cd03312 136 LLDEYLEAKAL-G--INTKPVLLGPVTFLKLSKA-------K----GGGFDR---LSLLDKLLPVYKELLKKLAAAGAEW 198 (360)
T ss_pred HHHHHHHHHhc-C--CCCcEEEECHHHHHHHhcc-------c----ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 34444545443 3 4567788899999844321 0 003333 4667778888888889999999999
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHHH
Q 015201 252 IQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADGR 325 (411)
Q Consensus 252 i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~~ 325 (411)
|++-|+.- ..++.+ +.+.+ ++.++.+.+..|+..+.+|.| |+.. .++.+.++++|++++|.. -++..++
T Consensus 199 IQiDEP~l~~~~~~~-~~~~~----~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l~ 273 (360)
T cd03312 199 VQIDEPALVLDLPEE-WLAAF----KRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAVL 273 (360)
T ss_pred EEeeCChhhcCCCHH-HHHHH----HHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHHH
Confidence 99999754 456543 33433 444444443222456899999 8776 578899999999998653 3577776
Q ss_pred HHh-CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 326 KRL-GNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 326 ~~~-g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
+.. .++....|-||.... .-++|++.+.++++.+.. ...++++|+|++ |.++..|
T Consensus 274 ~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~~lP~~~~~e 333 (360)
T cd03312 274 KAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCSLLHVPVDLENE 333 (360)
T ss_pred hcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCcCCCcccccc
Confidence 633 467788899999764 589999999999999977 668999999996 5454333
No 28
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=98.90 E-value=3.2e-08 Score=97.60 Aligned_cols=189 Identities=19% Similarity=0.154 Sum_probs=123.1
Q ss_pred eEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHH
Q 015201 188 AVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQLPPHM 266 (411)
Q Consensus 188 ~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~ 266 (411)
++.+.+.||++++..... + +.....+++.-+.+...+.++++.++|+..|++-|+.- +.++...
T Consensus 122 ~vK~~i~gP~tl~~~~~~----~-----------~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~ 186 (324)
T PF01717_consen 122 PVKGTITGPSTLADPSAN----R-----------YYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDAS 186 (324)
T ss_dssp SBEEEEE-HHHHHHTSEE----S-----------SSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSH
T ss_pred ccccccCHHHHhhchhcc----c-----------cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhc
Confidence 367788999998876543 1 11123456666777778888899999999999999843 2222111
Q ss_pred ---HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCC----CCHHHHHHHhCCCeeEEcc
Q 015201 267 ---WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWT----VDMADGRKRLGNDISVQGN 337 (411)
Q Consensus 267 ---f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~----~di~~~~~~~g~~~~l~G~ 337 (411)
-+.+-.....+.++.+-+. .+.++.+|+|+... .++.+.++++|+++++.. .+++-+++.-.++....|-
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lGv 265 (324)
T PF01717_consen 187 FDRDEYLDEAVAAEALNRAVKG-EDATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRELPSGKKVVLGV 265 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST-TTSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhccCC-CCCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHhCcCCceEEEEE
Confidence 1111111223444433222 36778999997754 358999999999987532 2566666633456778899
Q ss_pred CCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHh
Q 015201 338 VDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKS 392 (411)
Q Consensus 338 vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~ 392 (411)
||+..- .-++|+|.+.+++.++.......+++|+||+..-+ -.+.++.|+++++|
T Consensus 266 v~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 266 VDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp S-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 998764 47999999999999998766899999999997543 33567778888875
No 29
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=98.85 E-value=1.2e-07 Score=102.72 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=130.8
Q ss_pred ceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CC--
Q 015201 186 HAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QL-- 262 (411)
Q Consensus 186 ~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~i-- 262 (411)
+.++-+++.||.|++.+..- + .+ ..-.++++.++....+.++.+.++|++.|++-|+.-. .+
T Consensus 541 ~~~vK~~LtGPvT~l~~s~~----r----------~d-~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~ 605 (750)
T TIGR01371 541 SKPVKGMLTGPVTILNWSFV----R----------DD-IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPL 605 (750)
T ss_pred CCCCceEEechHHHHhhhhh----c----------cC-CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCc
Confidence 35688899999998754321 0 01 1125677788888888889999999999999987432 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-C---HHHHHH--HhCCCeeE
Q 015201 263 PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-D---MADGRK--RLGNDISV 334 (411)
Q Consensus 263 Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-d---i~~~~~--~~g~~~~l 334 (411)
..+.+.++..-.++.+-..+.....+..+.+|+| |+.. +++.+.++++|++++|... + +..+.+ .++. -..
T Consensus 606 ~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~-~ig 684 (750)
T TIGR01371 606 RKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPN-GIG 684 (750)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCC-eEE
Confidence 2234444433333333222221111345789999 6766 6799999999999987532 2 333333 2333 366
Q ss_pred EccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHhcC
Q 015201 335 QGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKSMK 394 (411)
Q Consensus 335 ~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~yg 394 (411)
.|-+|.... .-++|++.+.+++.++.......+++|+|++-.-. -...++.|++++++..
T Consensus 685 ~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~r 748 (750)
T TIGR01371 685 PGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEAR 748 (750)
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 788998765 47899999999999998866789999999986433 3456777888888765
No 30
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=98.81 E-value=1.4e-07 Score=92.71 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.9
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCH-
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPP- 264 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp- 264 (411)
.|+.+.+.||.|++.+-.+ ..+..+ +++...++.++.+.++.+.++|+..|++.++.-+ .+..
T Consensus 125 ~~~K~~ltGP~ti~~~s~~------------~~~~~~---~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~ 189 (330)
T COG0620 125 KPVKGMLTGPVTILLWSFN------------RYYISR---EELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLR 189 (330)
T ss_pred ccceeeeccHHhhHhhhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccc
Confidence 7788899999997766443 122233 5677777888888899999999999999886332 1111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c-cHhHHhcCCCcEEEcCCC---CC-HHHHHHHhCCCeeEEc
Q 015201 265 --HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G-FLERMKGTGVDVIGLDWT---VD-MADGRKRLGNDISVQG 336 (411)
Q Consensus 265 --~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~-~l~~~~e~g~d~l~~d~~---~d-i~~~~~~~g~~~~l~G 336 (411)
+.|.+.+...++..++... .+.-+.+|+|... . .++.+..+.+|+++++.. ++ +..+.+.-.++-.-.|
T Consensus 190 ~~~~~l~~~~~~~~~~~~~~~---~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~~~~~Ig~G 266 (330)
T COG0620 190 RDDDYLEWAVEAINLAAAGVG---ADTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEEVKYDKEIGLG 266 (330)
T ss_pred cchHHHHHHHHHHHHHHhcCC---CCcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHhccCCCeeecc
Confidence 3456666655555555443 2566788999663 4 468888899999987543 33 3333333234555668
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHHHHHHHHHHHHhcC
Q 015201 337 NVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 337 ~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~Eni~a~~~a~~~yg 394 (411)
-+|...- .-++++|.+.+++.++......++++|+|++ |...-.+.++.|+++++...
T Consensus 267 v~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 267 VVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIR 328 (330)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHHh
Confidence 8888765 4789999999999999998889999999997 44566778888998888754
No 31
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=98.69 E-value=8.2e-07 Score=96.41 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
.++.++..++ .| .++-..+.||+|++..... + . -+.++ .++++.++....+.++.+.++|++.
T Consensus 132 ~~~e~~~A~~-~g--~~~Kpvl~GP~T~l~lsk~----~---~----~y~~~---~~ll~~L~~~y~~~l~~L~~~G~~~ 194 (750)
T TIGR01371 132 PLEEYLEAKE-LG--IETKPVLLGPITFLKLSKA----V---E----EPFEP---LSLLEKLLPVYKEVLKKLAEAGATW 194 (750)
T ss_pred HHHHHHHHHh-cC--CCCeEEEECHHHHHHHhCc----c---C----CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 3444444443 23 4566778899998876431 0 0 13344 4667777788888888999999999
Q ss_pred EEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHHH
Q 015201 252 IQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADGR 325 (411)
Q Consensus 252 i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~~ 325 (411)
|++-+|.-. -++++ +.+.+...++++.+.+. +.++++|+| |+.. .++.+.++++|++++|.. .++..+.
T Consensus 195 IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~~~~----~~ki~l~tyFg~~~~~~~~l~~lpvd~l~lD~v~~~~~L~~~~ 269 (750)
T TIGR01371 195 VQIDEPALVTDLSKE-DLAAFKEAYTELSEALS----GLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHGKGTLELVK 269 (750)
T ss_pred EEeeCchhcCCCCHH-HHHHHHHHHHHHHhccC----CceEEEECCCCchHHHHHHHHcCCCCEEEEEeccCcccHHHHH
Confidence 999998653 34443 55656666666655442 356789999 8877 589999999999998753 3566554
Q ss_pred HHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 326 KRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 326 ~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
..++ ++....|-||-... ..+++++.+.++++++.. + ..+++|+|++ |.++..|
T Consensus 270 ~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~-~-~l~v~psCsLlhvP~~~~~e 328 (750)
T TIGR01371 270 AGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV-G-KLVVSTSCSLLHVPVDLELE 328 (750)
T ss_pred hcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC-C-CEEEeCCCCcccCCccCccc
Confidence 3344 56777899999765 689999999999999953 3 5999999996 5554444
No 32
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=98.66 E-value=1.3e-06 Score=94.61 Aligned_cols=173 Identities=15% Similarity=0.094 Sum_probs=127.1
Q ss_pred cccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHH
Q 015201 193 VGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWS 271 (411)
Q Consensus 193 ~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~ 271 (411)
+.||+|++...... . ..+++ ..-.++++.++....+.++.+.++|++.|++-+|.-. -+++ .+.+.+
T Consensus 155 l~GP~T~l~Lsk~~---~-------~~~~~-~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~-~~~~~~ 222 (766)
T PLN02475 155 LVGPVSYLLLSKPA---K-------GVDKS-FDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLES-HKLQAF 222 (766)
T ss_pred EECHHHHHHHhccc---c-------cccCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCH-HHHHHH
Confidence 67999988764420 0 01111 1124677778888888889999999999999998653 3444 567777
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCC-CcEEEcCCC---CCHHHHHHH-hC-CCeeEEccCCcCc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTG-VDVIGLDWT---VDMADGRKR-LG-NDISVQGNVDPAC 342 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g-~d~l~~d~~---~di~~~~~~-~g-~~~~l~G~vd~~~ 342 (411)
...++++.+.+. +.++.+|+| |+.. .++.+.+++ +|++++|.. .++..+++. ++ ++....|-||-..
T Consensus 223 ~~ay~~l~~~~~----~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRN 298 (766)
T PLN02475 223 KTAYAELESTLS----GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRN 298 (766)
T ss_pred HHHHHHHHhccC----CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCC
Confidence 788888776553 357899999 8876 489999999 999998753 356666443 44 5667789999976
Q ss_pred c-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 343 L-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 343 L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
. ..+.+++.+.++++++..++.+++++|+|++ |.+...|
T Consensus 299 iw~~dl~~~~~~i~~~~~~~~~~~l~v~psCsLlhvP~~~~~e 341 (766)
T PLN02475 299 IWANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNE 341 (766)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCccCCcccccc
Confidence 5 5899999999999999876568999999996 5444333
No 33
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=98.58 E-value=4.3e-06 Score=90.96 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..++..+.+++. + .++-.++.||+|++..... . .-+.++ .++++.+.....+.++.+.++|++
T Consensus 137 ~~l~e~~~ak~~-g--~~~K~vl~GP~T~l~ls~~--------~---~~~~~~---~ell~dl~~~y~~~l~~L~~aG~~ 199 (758)
T PRK05222 137 KLLDEFEEAKAL-G--INTKPVLLGPVTFLWLSKS--------K---GEGFDR---LDLLDDLLPVYAELLAELAAAGAE 199 (758)
T ss_pred cHHHHHHHHHhC-C--CCceEEEccHHHHHHHhcc--------c---ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344555555554 3 4567788999999843321 0 011223 466777888888889999999999
Q ss_pred EEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHH
Q 015201 251 CIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADG 324 (411)
Q Consensus 251 ~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~ 324 (411)
.|++-|+.- ..++++ +.+.+...++++.+.. ++..+.+|+| |+.. .++.+.++++|++++|.. .++..+
T Consensus 200 ~IQiDEP~l~~~~~~~-~~~~~~~~y~~l~~~~----~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l 274 (758)
T PRK05222 200 WVQIDEPALVLDLPQE-WLEAFKRAYEALAAAK----PRPKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAAL 274 (758)
T ss_pred EEEeeCchhhcCCCHH-HHHHHHHHHHHHhcCC----CCCCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHH
Confidence 999999754 456654 4454555555555421 1346889999 7765 579999999999998642 367777
Q ss_pred HHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 325 RKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 325 ~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
++.++ ++....|-||.... .-++|++.+.++++.+.. ..++++|+|++
T Consensus 275 ~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL 324 (758)
T PRK05222 275 LKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSL 324 (758)
T ss_pred HhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCC
Confidence 65443 56777899999764 589999999999999876 68999999996
No 34
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=96.94 E-value=0.02 Score=55.99 Aligned_cols=165 Identities=20% Similarity=0.206 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..++.++.. +..| +.+...+-||+|.+..--. .+. . .-.++++.+.....+.++.+.++|+.
T Consensus 135 ~~~~~~~eA-~~~G--~~~kpvL~GP~TfL~Lsk~----~~~--------~---~~~~ll~~l~~vY~~ll~~L~~~G~~ 196 (310)
T PF08267_consen 135 KLLDEFREA-KALG--INTKPVLPGPVTFLLLSKN----EDG--------S---DPLDLLDDLLPVYAELLKELAAAGVE 196 (310)
T ss_dssp HHHHHHHHH-HHTT--GGEEEEEE-HHHHHHTSEE----TTC--------C---HHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHH-Hhhh--cCCeeEEEcHHHHHHHcCc----CCC--------C---CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444444 3444 3456667799998864221 000 1 22468888889989999999999999
Q ss_pred EEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHH
Q 015201 251 CIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADG 324 (411)
Q Consensus 251 ~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~ 324 (411)
.|++.+|.-. =. ++.+.+-+..-++++. .. ++.++++.+- |+.. .++.+.+++++++++|.. .++..+
T Consensus 197 ~VQldEP~Lv~d~-~~~~~~~~~~aY~~L~----~~-~~~~ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 197 WVQLDEPALVLDL-PEEWLEAFEEAYEELA----AA-PRPKILLATYFGDLGDNLELLLDLPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp EEEEE-GGGGSSG-CHHHHHHHHHHHHHHC----CT-TTSEEEEE--SS--CCHHHHHTTSSESEEEEETTTHCHHHHHH
T ss_pred EEEecCCeeecCC-CHHHHHHHHHHHHHHh----cC-CCCcEEEECCCCchhhHHHHHhcCCCcEEEeeccCCcccHHHH
Confidence 9999998653 23 5556666666666665 21 2566666654 5544 689999999999999864 356666
Q ss_pred HH-Hh-CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHH
Q 015201 325 RK-RL-GNDISVQGNVDPACL-FSPLPALTDEIQRVVK 359 (411)
Q Consensus 325 ~~-~~-g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~ 359 (411)
.+ .+ .++....|-||-... ..+.+++.+.++++.+
T Consensus 271 ~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~ 308 (310)
T PF08267_consen 271 LKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLRE 308 (310)
T ss_dssp HHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHh
Confidence 66 34 467777899998764 5788888877777654
No 35
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0069 Score=60.97 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=115.7
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--C-CCC
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--G-QLP 263 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~-~iS 263 (411)
.|+-|++.||.|++.+-.- ++ +.|+ |+.+-.++=.+.+..+-+.++|+.+|++.++.- | -+.
T Consensus 553 rPmKGMLTgPvTiL~WSF~----R~---------D~~~--~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR 617 (765)
T KOG2263|consen 553 RPMKGMLTGPVTILNWSFV----RN---------DQPR--HETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLR 617 (765)
T ss_pred CcccccccCceEEEEeccc----cC---------Ccch--hHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcc
Confidence 5788999999998765432 10 2232 444555555666677778889999999877532 3 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCC-cc-cHhHHhcCCCcEEEcCCCCCHHHHHHH------hCCCeeE
Q 015201 264 PHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGN-GG-FLERMKGTGVDVIGLDWTVDMADGRKR------LGNDISV 334 (411)
Q Consensus 264 p~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~-~~-~l~~~~e~g~d~l~~d~~~di~~~~~~------~g~~~~l 334 (411)
...+ .|.+.+--.-+......-- ..-+--|.|=. .+ ++..++++..|++++++.-+=.++-.. ||..+ -
T Consensus 618 ~aE~-~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~I-G 695 (765)
T KOG2263|consen 618 KAEH-SFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI-G 695 (765)
T ss_pred hhhH-HHHHHHHHHHhhhccccccccchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCc-C
Confidence 3332 3333443333322211000 11234466743 34 579999999999999764332222222 44211 1
Q ss_pred EccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC----CCCcHHHHHHHHHHHHhcC
Q 015201 335 QGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL----VGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 335 ~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~----~~tp~Eni~a~~~a~~~yg 394 (411)
-|-.|.... .-+.+|+.+.+.+++.......+.++|+|++- +.+.+ .++.|+++++...
T Consensus 696 pG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKTR~~~E~~~-~L~~Mv~AAk~~R 759 (765)
T KOG2263|consen 696 PGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKTRGYTEVKP-ALKNMVAAAKLIR 759 (765)
T ss_pred CceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCcccCCCccccH-HHHHHHHHHHHHH
Confidence 233444443 36789999999999998877899999999984 34444 4888999998764
No 36
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.94 E-value=0.33 Score=46.48 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCC----
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTG---- 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g---- 309 (411)
++..+++++.+.++|++.|-++- ...||+.|+ .++.+.+..++..+..+.-++...++...+.|
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~~~~---------~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 19 PEEKLEIARQLDELGVDVIEAGF---PAASPGDFE---------AVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC---CCCCHHHHH---------HHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 45667888899999999986631 124787652 33444443335555555546655677777777
Q ss_pred CcEEEcCCC-----------CC----HHH------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLDWT-----------VD----MAD------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d~~-----------~d----i~~------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+.+-.. .+ +.. ..+..|-++++ +..+. -.-+++.+.+.++++.+.. ...+-+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~G-~~~i~l 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEF-SAEDA--TRTDLDFLIEVVEAAIEAG-ATTINI 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-eeecC--CCCCHHHHHHHHHHHHHcC-CCEEEE
Confidence 888765211 11 111 11223444332 22221 1357888888888877643 223333
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
..++. -..|+.+..+++.+++.
T Consensus 163 --~DT~G-~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 163 --PDTVG-YLTPEEFGELIKKLKEN 184 (268)
T ss_pred --CCCCC-CCCHHHHHHHHHHHHHh
Confidence 33332 23466677777777764
No 37
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.54 E-value=0.45 Score=45.51 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++.+ -.+|++++.. +.+ .+......+..|...+..-++...+.|++.+
T Consensus 21 ~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~-----~~l----~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 21 TEDKIEIAKALDAFGVDYIELTSP---AASPQSRADC-----EAI----AKLGLKAKILTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHH-----HHH----HhCCCCCcEEEEecCCHHHHHHHHHcCcCEE
Confidence 455677888999999999987643 4567776532 222 2211122345565555556888889999988
Q ss_pred EcCC-----------CCCHHHHHHHh----------CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDW-----------TVDMADGRKRL----------GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~-----------~~di~~~~~~~----------g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
++-. ..+.+++.+.+ | +.+..++-- ...-+++.+.+.++++.+. +...+.+. .
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G--~~v~~~~ed-a~r~~~~~l~~~~~~~~~~-g~~~i~l~--D 162 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG--IEVRFSSED-SFRSDLVDLLRVYRAVDKL-GVNRVGIA--D 162 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEe-eCCCCHHHHHHHHHHHHHc-CCCEEEEC--C
Confidence 6521 23333332222 3 222222211 1124567777766666554 32344442 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++. -..|+.+..++..+++.
T Consensus 163 t~G-~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 163 TVG-IATPRQVYELVRTLRGV 182 (262)
T ss_pred cCC-CCCHHHHHHHHHHHHHh
Confidence 332 34456677777777764
No 38
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.53 E-value=0.5 Score=47.43 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+ .+|++.|+. ++.+.+..++..+..+.-.+...++...+.|++.+
T Consensus 22 ~~~k~~ia~~L~~~Gv~~IEvG~p---~~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 22 AAEKLAIARALDEAGVDELEVGIP---AMGEEERAV---------IRAIVALGLPARLMAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHH---------HHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEE
Confidence 355567888889999999876522 256655442 33333332233333333244446788888999988
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 90 ~i 91 (365)
T TIGR02660 90 HI 91 (365)
T ss_pred EE
Confidence 65
No 39
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.41 E-value=0.5 Score=45.79 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTG 309 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g 309 (411)
.+.++++.+++.|++++++..+.|. .+|.++.++++ +..++.+. +.+|++.|++.++. -+ ....+.|
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~----~~~~~~~~---~~~pvi~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVV----RAAVEETA---GRVPVLAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhC---CCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 3445566778899999988887774 79999988873 34444443 25789999876543 23 4555789
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|++.+
T Consensus 95 ad~v~~ 100 (289)
T cd00951 95 ADGILL 100 (289)
T ss_pred CCEEEE
Confidence 888754
No 40
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=95.40 E-value=0.64 Score=44.24 Aligned_cols=141 Identities=13% Similarity=0.032 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++=+ .+++..|+ .++.+.+..++..+..+.-.+...++...+.|++.+
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g~p---~~~~~~~e---------~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVGIP---AMGEEERE---------AIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC---CCCHHHHH---------HHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEE
Confidence 466678888899999999877522 24554432 233333332244444454344445777888999988
Q ss_pred EcCCCCC-----------HH----------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDWTVD-----------MA----------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~~~d-----------i~----------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.+-...+ .+ +..+..|-.+.+ +-.|. -.-+++.+.+.++++.+. +...+.|. .
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~-G~~~i~l~--D 160 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV-GAEDA--SRADPDFLIEFAEVAQEA-GADRLRFA--D 160 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE-eeccC--CCCCHHHHHHHHHHHHHC-CCCEEEeC--C
Confidence 6521111 11 112223433222 21111 125688888887777664 32233332 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++. ...|+.+..++..+++.
T Consensus 161 T~G-~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 161 TVG-ILDPFTTYELIRRLRAA 180 (259)
T ss_pred CCC-CCCHHHHHHHHHHHHHh
Confidence 222 34466677777777653
No 41
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=95.11 E-value=1.4 Score=42.33 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-----c
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-----G 300 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-----~ 300 (411)
++.+.+...+-++.+++-|+|.+.+ +. +.+...- +-+.-..++.++.... ..|+++|.- |.+ .
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLi-ET---~~D~l~~-KaA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~ 209 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILI-ET---IFDTLNA-KAAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTI 209 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEE-eh---hccHHHH-HHHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCcH
Confidence 6666777778888999999999854 33 3344332 2344455555554433 478887752 332 1
Q ss_pred --cHhHHhcCCCcEEEcCCCCC-------HHHHHHHhCCCeeEEccC--CcC---cc-C-CCHHHHHHHHHHHHHHhCCC
Q 015201 301 --FLERMKGTGVDVIGLDWTVD-------MADGRKRLGNDISVQGNV--DPA---CL-F-SPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 301 --~l~~~~e~g~d~l~~d~~~d-------i~~~~~~~g~~~~l~G~v--d~~---~L-~-gt~eeV~~ev~~~i~~~~~~ 364 (411)
++..+...|++.+.+.-..- +.++.+....-++...|- +.. .+ + .+||+..+.++...+.++
T Consensus 210 ~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~-- 287 (311)
T COG0646 210 EAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG-- 287 (311)
T ss_pred HHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC--
Confidence 35667788999886543222 344444444445555543 221 11 2 689999999988888763
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHH
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
.=+=-||. ||.||+|+||.++++
T Consensus 288 -vnIvGGCC---GTTPeHIraia~~v~ 310 (311)
T COG0646 288 -VNIVGGCC---GTTPEHIRAIAEAVK 310 (311)
T ss_pred -ceeecccc---CCCHHHHHHHHHHhc
Confidence 22223554 578999999999886
No 42
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.09 E-value=1.6 Score=41.68 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-C---CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDS-W---GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~-~---~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++.. . ...++++.=.+-+.|. ++.+++.. +.|+.+|+.... .++.-.+.|+
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~----v~~~~~~~-~~plsiDT~~~~-vi~~al~~G~ 96 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPV----IKALRDQP-DVPISVDTYRAE-VARAALEAGA 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH----HHHHHhcC-CCeEEEeCCCHH-HHHHHHHcCC
Confidence 44556677899999999988632 2 2367887533444444 44454442 577777764332 3455555699
Q ss_pred cEEE-cCC--CCCHHHHHHHhCCCeeEEc--cCCcCc---c-C-CCHHHHHHHHHHHHHHhCC-----CCeEEeCCCCCC
Q 015201 311 DVIG-LDW--TVDMADGRKRLGNDISVQG--NVDPAC---L-F-SPLPALTDEIQRVVKCAGS-----RGHILNLGHGVL 375 (411)
Q Consensus 311 d~l~-~d~--~~di~~~~~~~g~~~~l~G--~vd~~~---L-~-gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~i~ 375 (411)
+.++ +.. .-++..+.+++|-.+++|= +++... . + ...+++.+..++.++.+.. ...||-||.+..
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ 176 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFG 176 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcc
Confidence 9985 432 2236677777887666652 221111 1 1 1246677777777665432 467999988755
Q ss_pred CCCcHHHHHHHHHHHHhc
Q 015201 376 VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 376 ~~tp~Eni~a~~~a~~~y 393 (411)
. +..+| ..+++..+++
T Consensus 177 k-s~~~~-~~~l~~i~~l 192 (257)
T TIGR01496 177 K-TPEHN-LELLKHLEEF 192 (257)
T ss_pred c-CHHHH-HHHHHHHHHH
Confidence 4 43333 3333444443
No 43
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.99 E-value=0.77 Score=46.34 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++- ..++++.|+. ++.+.+.+....+..++-.....++...+.|++.+
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~---p~~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGF---PAVSEDEKEA---------IKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeC---CCcChHHHHH---------HHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 34556778888999999986642 2367766542 33443332222234443232335788888999887
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
.+
T Consensus 93 ~i 94 (378)
T PRK11858 93 HI 94 (378)
T ss_pred EE
Confidence 65
No 44
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.84 E-value=0.79 Score=44.40 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c-cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G-FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~-~l---~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|+++.+++ .+.+.+.++. .+|++.|.++.. . .+ ....+
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~----~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEEL----IRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHH----HHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHH
Confidence 34445666778899999988776664 7999998887 3444444432 478999998753 2 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|.+.+
T Consensus 95 ~G~d~v~~ 102 (292)
T PRK03170 95 AGADGALV 102 (292)
T ss_pred cCCCEEEE
Confidence 89998854
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.80 E-value=0.3 Score=48.76 Aligned_cols=111 Identities=22% Similarity=0.242 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHh--cCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMK--GTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~--e~g~ 310 (411)
++..++++.+.+.|+|-|++ -|++|+++|..-. ++++.+|+.. ++|+.+|++.... ..-+++ +.|+
T Consensus 156 e~yv~~akel~~~g~DSIci-KDmaGlltP~~ay--------elVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGv 225 (472)
T COG5016 156 EYYVELAKELLEMGVDSICI-KDMAGLLTPYEAY--------ELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGV 225 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEe-ecccccCChHHHH--------HHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCc
Confidence 45556788889999999977 4567789997644 4567788876 6899999987654 244544 6799
Q ss_pred cEEE-----cCCC---CCHHHHHHHhCCCeeEEc-cCCcCccCCCHHHHHHHHHHHHHHh
Q 015201 311 DVIG-----LDWT---VDMADGRKRLGNDISVQG-NVDPACLFSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 311 d~l~-----~d~~---~di~~~~~~~g~~~~l~G-~vd~~~L~gt~eeV~~ev~~~i~~~ 361 (411)
|++. +..+ .+.......+ .| +-|+.+...-.+++.++.+++.+..
T Consensus 226 D~iDTAisp~S~gtsqP~tEtmv~aL------~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 226 DGIDTAISPLSGGTSQPATETMVAAL------RGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred chhhhhhccccCCCCCCcHHHHHHHh------cCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 9873 2222 2333333333 23 4455433344566777777776665
No 46
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.72 E-value=0.66 Score=44.97 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++ +|.+|+.+-...-+ .+.+..+.+. ++..+. ..+-+..-++.-.+.|++.+
T Consensus 25 ~e~k~~ia~~L~~~Gv~~IEvg----sf~~p~~~p~~~d~--~e~~~~l~~~-~~~~~~-~l~~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 25 TADKIALIDRLSAAGLSYIEVA----SFVSPKWVPQMADA--AEVMAGIQRR-PGVTYA-ALTPNLKGLEAALAAGADEV 96 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCcCcccccccccH--HHHHHhhhcc-CCCeEE-EEecCHHHHHHHHHcCCCEE
Confidence 4566788889999999998664 45555443222211 3444444432 244333 44544445788888999988
Q ss_pred EcCCC-----------CCHHH----------HHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLDWT-----------VDMAD----------GRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d~~-----------~di~~----------~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+-.. .+..+ ..+..| +.+.++|.... -.-+++.+.+.++++.+.+. ..+.
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-d~i~ 173 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGC-YEIS 173 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCC-cEEE
Confidence 54211 11111 122334 23344333211 12467778777777776532 2333
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
|. .++. -..|+.+..+++.+++
T Consensus 174 l~--DT~G-~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 174 LG--DTIG-VGTPGQVRAVLEAVLA 195 (287)
T ss_pred ec--cccC-ccCHHHHHHHHHHHHH
Confidence 32 2222 2345557777766664
No 47
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.72 E-value=0.72 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++.-+++++.+.++|++.|-++ .+.||+..-.+. -.+++++.+++. .+..+. -.|.+..-++...++|++.+
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvG----s~vspk~vPqma--d~~ev~~~i~~~-~~~~~~-~l~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEAT----SFVSPKWVPQLA--DAKDVMAAVRNL-EGARFP-VLTPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC----CCcCcccccccc--cHHHHHHHHHhc-cCCcee-EEcCCHHHHHHHHHcCcCEE
Confidence 3555678889999999998664 234553221111 112233333332 133222 23554446888889999987
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 139 ~i 140 (347)
T PLN02746 139 AV 140 (347)
T ss_pred EE
Confidence 54
No 48
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.70 E-value=0.71 Score=44.57 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++++..+.|- .+|.+++++++ +...+.++. .+|++.|+++... -+ ....+
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~ 91 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVI----EFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAED 91 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHH
Confidence 34455666778899999988777664 79999998874 444555542 4788888876532 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 92 ~Gad~v~v 99 (285)
T TIGR00674 92 VGADGFLV 99 (285)
T ss_pred cCCCEEEE
Confidence 89998854
No 49
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.43 E-value=1.3 Score=43.32 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTGV 310 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g~ 310 (411)
+.+.++.+++.|+++|++....|- .+|++..++++ +...+.+. +.+|++.|+++++. -+ ....+.|+
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~---~~~pvi~gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVV----RAAVETTA---GRVPVIAGAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhC---CCCcEEEecCCCHHHHHHHHHHHHHhCC
Confidence 345556777889999988777774 79999988873 33444443 25789999976543 23 44556899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
|++.+
T Consensus 103 dav~~ 107 (303)
T PRK03620 103 DGILL 107 (303)
T ss_pred CEEEE
Confidence 88753
No 50
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.36 E-value=1.2 Score=44.70 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+ ..|++.|+ .++.+.+.+....+..|...+...++...+.|++.+
T Consensus 21 ~~~k~~ia~~L~~~Gv~~IEvG~p---~~~~~~~e---------~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (363)
T TIGR02090 21 VEQKVEIARKLDELGVDVIEAGFP---IASEGEFE---------AIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSI 88 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCChHHHH---------HHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEE
Confidence 455567788889999999866322 34565542 233333333244455566655556888889999988
Q ss_pred EcCCC-----------CCHHH----------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDWT-----------VDMAD----------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~~-----------~di~~----------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.+-.. .+.++ ..+..|-++.+. -.|. -.-+++.+.+.++++.+. +...+.+.-
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~eda--~r~~~~~l~~~~~~~~~~-g~~~i~l~D-- 162 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS-AEDA--TRTDIDFLIKVFKRAEEA-GADRINIAD-- 162 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE-Eeec--CCCCHHHHHHHHHHHHhC-CCCEEEEeC--
Confidence 65211 12111 112234333221 1121 135677777777766654 323444432
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++ ....|+.+..+++.+++.
T Consensus 163 T~-G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 163 TV-GVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CC-CccCHHHHHHHHHHHhcc
Confidence 22 234456677777776653
No 51
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.34 E-value=1.9 Score=40.21 Aligned_cols=138 Identities=11% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CC-------cccHhH----Hh
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GN-------GGFLER----MK 306 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~-------~~~l~~----~~ 306 (411)
.++..++.|++.+.+-...+.. + .+......+++.+..+++ +.|+++-.+ |. ...+.. ..
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~-~----~~~~~~~i~~v~~~~~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSE-E----EREMLEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCc-h----HHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 3456788999988554444432 1 355666788888888876 788876443 21 112333 55
Q ss_pred cCCCcEEEcCCCCCHHHHH---HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHH
Q 015201 307 GTGVDVIGLDWTVDMADGR---KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAV 383 (411)
Q Consensus 307 e~g~d~l~~d~~~di~~~~---~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni 383 (411)
+.|+|.+-+.+..|+..++ +..+-.+.+.||+.. .|+++..+.++++++.+.. |+.++..- +...-|.+-+
T Consensus 154 ~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~----~~~~~~l~~~~~~~~~Ga~-gv~vg~~i-~~~~dp~~~~ 227 (235)
T cd00958 154 ELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKK----DSEEEFLKMVYDAMEAGAA-GVAVGRNI-FQRPDPVAML 227 (235)
T ss_pred HHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCC----CCHHHHHHHHHHHHHcCCc-EEEechhh-hcCCCHHHHH
Confidence 7899999776555555554 444444656677655 4788888888999885433 66555432 2233355556
Q ss_pred HHHHHHH
Q 015201 384 AHFFEVG 390 (411)
Q Consensus 384 ~a~~~a~ 390 (411)
+++.+.+
T Consensus 228 ~~~~~~~ 234 (235)
T cd00958 228 RAISAVV 234 (235)
T ss_pred HHHHHHh
Confidence 6665543
No 52
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.31 E-value=1.7 Score=41.58 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=89.7
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-------cCCcc--c----HhHHhc
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-------NGNGG--F----LERMKG 307 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-------CG~~~--~----l~~~~e 307 (411)
++..++.|+|.+.+-..+++.- ++...-..+++.+..++. |+|++++. -+... . .....+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~-----~~~~~~~~~~v~~~~~~~--g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSET-----EAEMLEDLGEVAEECEEW--GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChh-----HHHHHHHHHHHHHHHHHc--CCcEEEEEecCCCccCCCccHHHHHHHHHHHHH
Confidence 4457899999988876666422 334566788888888876 78887762 11111 1 133447
Q ss_pred CCCcEEEcCCCCCHHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHH
Q 015201 308 TGVDVIGLDWTVDMADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAV 383 (411)
Q Consensus 308 ~g~d~l~~d~~~di~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni 383 (411)
.|+|.+-..+..++..+++.. +-.+...||++. .|.++..+.++++++.+.. |.. .|-.+ ...-|.+.+
T Consensus 172 ~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GGi~~----~~~~~~l~~v~~~~~aGA~-Gis--~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 172 LGADIVKTNYTGDPESFREVVEGCPVPVVIAGGPKT----DTDREFLEMVRDAMEAGAA-GVA--VGRNVFQHEDPEAIT 244 (267)
T ss_pred HCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-EEe--hhhhhhcCCCHHHHH
Confidence 899999665544565555544 335777898887 4678888888888887554 433 33333 334467777
Q ss_pred HHHHHHHHhc
Q 015201 384 AHFFEVGKSM 393 (411)
Q Consensus 384 ~a~~~a~~~y 393 (411)
+++...+++=
T Consensus 245 ~~l~~~v~~~ 254 (267)
T PRK07226 245 RAISAVVHEG 254 (267)
T ss_pred HHHHHHHhCC
Confidence 7777777653
No 53
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=94.18 E-value=4.2 Score=38.72 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++- +....++++.=.+-+.|.++.+-+.. +.|+. ++-... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-----~~plS--IDT~~~~v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-----DVLIS--VDTFRAEVARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCcEE--EeCCCHHHHHHHHHhC
Confidence 4455667788999999998873 23347899887777777777765433 45543 333333 466666779
Q ss_pred CcEEE-cCCC---CCHHHHHHHhCCCeeEEc--cCCcCc--c--C-CCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 310 VDVIG-LDWT---VDMADGRKRLGNDISVQG--NVDPAC--L--F-SPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 310 ~d~l~-~d~~---~di~~~~~~~g~~~~l~G--~vd~~~--L--~-gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
++.++ +... ..+..+.+++|-.+++|- +++... . + ...+++.+..++.++.+.. ..+|+-||.+
T Consensus 97 ~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 97 ADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIG 176 (257)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCC
Confidence 99986 5332 235555677876666652 222211 0 1 1246677777777776543 3789999987
Q ss_pred CCCCCcHHHH
Q 015201 374 VLVGTPEEAV 383 (411)
Q Consensus 374 i~~~tp~Eni 383 (411)
+... ..+|+
T Consensus 177 f~ks-~~~~~ 185 (257)
T cd00739 177 FGKT-PEHNL 185 (257)
T ss_pred cccC-HHHHH
Confidence 6544 44443
No 54
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.35 E-value=1.3 Score=42.88 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc-cH---hHHh
Q 015201 235 QAIADYIIYQVESG-AHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G-~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~-~l---~~~~ 306 (411)
+.+.++++.+++.| +++|++....|. .+|.++.++++ +...+.... .+|++.|+.+. +. -+ ....
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~~a~ 93 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIF----RIAKDEAKD---QIALIAQVGSVNLKEAVELGKYAT 93 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHH
Confidence 34456677788999 999988887774 79999988864 334444432 47888776443 32 23 4556
Q ss_pred cCCCcEEEc
Q 015201 307 GTGVDVIGL 315 (411)
Q Consensus 307 e~g~d~l~~ 315 (411)
+.|+|++.+
T Consensus 94 ~~Gad~v~v 102 (290)
T TIGR00683 94 ELGYDCLSA 102 (290)
T ss_pred HhCCCEEEE
Confidence 789988754
No 55
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=93.29 E-value=7 Score=37.77 Aligned_cols=154 Identities=9% Similarity=0.076 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++--+ +..+|++.-.+-+.|.++.+.+.. ++|+ -++-... .++.-.+.|
T Consensus 38 ~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-----~~~I--SIDT~~~~va~~AL~~G 110 (282)
T PRK11613 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-----EVWI--SVDTSKPEVIRESAKAG 110 (282)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCeE--EEECCCHHHHHHHHHcC
Confidence 344566778889999999887522 248999887777888888775433 3443 3444433 467777789
Q ss_pred CcEEE-cCC--CCCHHHHHHHhCCCeeEEccC-CcCccC-----CC-HHHHHHHHHHHHHHhC----C-CCeEEeCCCCC
Q 015201 310 VDVIG-LDW--TVDMADGRKRLGNDISVQGNV-DPACLF-----SP-LPALTDEIQRVVKCAG----S-RGHILNLGHGV 374 (411)
Q Consensus 310 ~d~l~-~d~--~~di~~~~~~~g~~~~l~G~v-d~~~L~-----gt-~eeV~~ev~~~i~~~~----~-~gfIls~gc~i 374 (411)
++++| +.. ..++.+..+++|-.+++|=.- .|.... .+ .++|.+..++.++.+. + ..+|+-||-++
T Consensus 111 adiINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF 190 (282)
T PRK11613 111 AHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGF 190 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc
Confidence 99994 322 123444456677677776221 122111 11 3445445455555432 2 47899999887
Q ss_pred CCCCcHHHHHHHH--HHHHhcCCC
Q 015201 375 LVGTPEEAVAHFF--EVGKSMKYD 396 (411)
Q Consensus 375 ~~~tp~Eni~a~~--~a~~~yg~~ 396 (411)
.. +..+|+.-+- +..+++|.+
T Consensus 191 ~k-~~~~n~~ll~~l~~l~~lg~P 213 (282)
T PRK11613 191 GK-NLSHNYQLLARLAEFHHFNLP 213 (282)
T ss_pred CC-CHHHHHHHHHHHHHHHhCCCC
Confidence 53 3456665543 445666543
No 56
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.99 E-value=2.3 Score=40.95 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--c---HhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--F---LERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~---l~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|.+++++++ +...+... +..|++.+.++... - .....+
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~----~~~~~~~~---~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVI----EAVVEAVN---GRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHH----HHHHHHhC---CCCcEEeccCCccHHHHHHHHHHHHH
Confidence 44556677788899999988876664 79999988873 33334443 25788888887542 2 355667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|.+.+
T Consensus 94 ~G~d~v~~ 101 (284)
T cd00950 94 AGADAALV 101 (284)
T ss_pred cCCCEEEE
Confidence 89998753
No 57
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.91 E-value=4.1 Score=38.69 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec------CCcc--cH----hHHhc
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN------GNGG--FL----ERMKG 307 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C------G~~~--~l----~~~~e 307 (411)
.++..++.|++.+.+-+.++. ...+ +++ ...+++.+..+++ |+|++++.- |... .+ ....+
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~---~~~~-~~~-~~~~~i~~~~~~~--g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGS---DTEW-EQI-RDLGMIAEICDDW--GVPLLAMMYPRGPHIDDRDPELVAHAARLGAE 167 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCC---chHH-HHH-HHHHHHHHHHHHc--CCCEEEEEeccCcccccccHHHHHHHHHHHHH
Confidence 355678999999998887664 1222 333 5788888888876 678766321 2111 12 23346
Q ss_pred CCCcEEEcCCCCCHHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHH
Q 015201 308 TGVDVIGLDWTVDMADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAV 383 (411)
Q Consensus 308 ~g~d~l~~d~~~di~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni 383 (411)
.|+|.+-+.+..++..+++.. +-.+...||+.. .|.++..+.+.++++.+.. |+..+ -.+ ...-|.+.+
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~----~~~~~~~~~i~~~~~aGa~-Gia~g--~~i~~~~dp~~~~ 240 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKT----NSDREFLQMIKDAMEAGAA-GVAVG--RNIFQHDDPVGIT 240 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCC----CCHHHHHHHHHHHHHcCCc-EEehh--hHhhcCCCHHHHH
Confidence 899999776665666555443 344666788876 4678888888888887554 44433 333 233356666
Q ss_pred HHHHHHHHh
Q 015201 384 AHFFEVGKS 392 (411)
Q Consensus 384 ~a~~~a~~~ 392 (411)
+++.+.+++
T Consensus 241 ~~l~~~i~~ 249 (258)
T TIGR01949 241 KAVCKIVHE 249 (258)
T ss_pred HHHHHHHhC
Confidence 666665543
No 58
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.81 E-value=2 Score=40.94 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHH----HHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQ----WSEPYIREIVSLVRTKCPETPIVLYINGNGG---- 300 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~e----f~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---- 300 (411)
+..++.++.+.++|+|.+-++ ||.+. .|-...-|- +-.+..-++++.+++.+.++|+++..+-|.-
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 455677788899999998655 55552 222222221 2235555678888877668899999988742
Q ss_pred ---cHhHHhcCCCcEEEc-CC----CCCHHHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 301 ---FLERMKGTGVDVIGL-DW----TVDMADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 301 ---~l~~~~e~g~d~l~~-d~----~~di~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
++...++.|+|++-+ |- ..++.+..+++| +++..|. .|+++- .+++.+.. .|||--.
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g--------i~~I~lvaPtt~~~r---l~~i~~~a--~GFiY~v 177 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG--------IDPIFLVAPTTPDER---LKKIAEAA--SGFIYYV 177 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC--------CcEEEEeCCCCCHHH---HHHHHHhC--CCcEEEE
Confidence 345677899999854 32 223444555444 4554432 455432 33344433 3666555
Q ss_pred CC-CCC-CCCc-HHHHHHHHHHHHhcCCCCCCC
Q 015201 371 GH-GVL-VGTP-EEAVAHFFEVGKSMKYDNSSQ 400 (411)
Q Consensus 371 gc-~i~-~~tp-~Eni~a~~~a~~~yg~~~~~~ 400 (411)
+. ++. ...+ .+-+...++.+|+|...++..
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 54 221 1112 223899999999987666543
No 59
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.72 E-value=5 Score=38.12 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CCcccHh
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GNGGFLE 303 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~~~~l~ 303 (411)
++.+.+..++-++.+.+.|+|+|.+-+-. ..-.+|+ ....+-+++..+++.. ++|+-+.+= +...-+.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~e-----tvaaM~~i~~~v~~~~-~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPE-----TVAAMARIAREVRREV-SVPVGVNVLRNDPKAALA 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHH-----HHHHHHHHHHHHHHhC-CCCEEeeeecCCCHHHHH
Confidence 56677778888999999999999665422 2224543 3456778888887764 566533322 2222344
Q ss_pred HHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc--cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 304 RMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC--LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 304 ~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~--L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
.-..+|.+-+-+ +.. -++-..|+.++-++.++++|+... -.++ ..+.+.++..++.++.-+.
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~~~~~~~~a~~~~~aDav 176 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RDLEEAAKDAVERGGADAV 176 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CCHHHHHHHHHHhcCCCEE
Confidence 444456555421 111 145667888887899999999853 1222 2255667777776665566
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~ 390 (411)
|++-. .....++++.++.+.+.+
T Consensus 177 iVtG~-~TG~~~~~~~l~~vr~~~ 199 (254)
T PF03437_consen 177 IVTGK-ATGEPPDPEKLKRVREAV 199 (254)
T ss_pred EECCc-ccCCCCCHHHHHHHHhcC
Confidence 66533 333345566555555443
No 60
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.71 E-value=2.5 Score=40.51 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|.+..++.+ +.+.+.++. .+|++.|..+... .+ ....+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVI----EAVVEAVAG---RVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHH
Confidence 44556677788889999988887774 79999988763 334444432 5788999887643 23 45667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 89998754
No 61
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.68 E-value=2.1 Score=41.11 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++++.++|++.|-++ ++.||+.+-.+.- ...++..+... .+..+..+ |.+..-++...+.|++.+
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvG----s~~~~~~~p~~~d--~~~~~~~l~~~-~~~~~~~~-~~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVT----SFVSPKWVPQMAD--AEEVLAGLPRR-PGVRYSAL-VPNLRGAERALAAGVDEV 90 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCCCcccccccCC--HHHHHhhcccC-CCCEEEEE-CCCHHHHHHHHHcCcCEE
Confidence 3566788899999999998764 3455543211110 00222222221 13333333 555446888889999988
Q ss_pred EcCC-C----------CCH----------HHHHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLDW-T----------VDM----------ADGRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d~-~----------~di----------~~~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
++-. . .+. .+..+..|. .+.+++.... =.-+++.+.+.++++.+. +...+-
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~--~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~ 167 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL--RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDL-GCDEIS 167 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHc-CCCEEE
Confidence 6421 1 121 112222342 3444433221 013677777777777653 322343
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+.- ++. -..|+.+..+++.+++.
T Consensus 168 l~D--T~G-~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 168 LGD--TIG-VATPAQVRRLLEAVLER 190 (274)
T ss_pred ECC--CCC-ccCHHHHHHHHHHHHHH
Confidence 432 222 23466677777777653
No 62
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=92.66 E-value=4.8 Score=38.78 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
++.++.+.+.|+..+++...... ..++.+ .++++++.+.+++. ++.+.++. |..+ .++.+++.|++.+++
T Consensus 68 ~~~~~~~~~~g~~~~~l~~~g~~-~~~~~~----~~~~~~i~~~~~~~--~i~~~~~~-g~~~~e~l~~Lk~aG~~~v~i 139 (296)
T TIGR00433 68 LEEARKAKAAGATRFCLVASGRG-PKDREF----MEYVEAMVQIVEEM--GLKTCATL-GLLDPEQAKRLKDAGLDYYNH 139 (296)
T ss_pred HHHHHHHHHCCCCEEEEEEecCC-CChHHH----HHHHHHHHHHHHhC--CCeEEecC-CCCCHHHHHHHHHcCCCEEEE
Confidence 44455556678888766554443 334433 56777777777665 56555443 6554 478899999999865
Q ss_pred C
Q 015201 316 D 316 (411)
Q Consensus 316 d 316 (411)
+
T Consensus 140 ~ 140 (296)
T TIGR00433 140 N 140 (296)
T ss_pred c
Confidence 3
No 63
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.61 E-value=9.6 Score=36.21 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.. +..+|++.=.+-+.|..+.+.+.. +.|+. ++-... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-----~~piS--IDT~~~~v~~aaL~~g 96 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-----DVPIS--VDTFNAEVAEAALKAG 96 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-----CCeEE--EeCCcHHHHHHHHHhC
Confidence 455677788999999999877433 237888775555666666654322 45543 333322 467667778
Q ss_pred CcEEE-cCCC---CCHHHHHHHhCCCeeEEccCC-cCc---c---CCCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 310 VDVIG-LDWT---VDMADGRKRLGNDISVQGNVD-PAC---L---FSPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 310 ~d~l~-~d~~---~di~~~~~~~g~~~~l~G~vd-~~~---L---~gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
++.++ +... ..+.++.+++|-.++++-.=+ +.. + ..+.+++.+..++.++.+.. ..+|+-||-+
T Consensus 97 ~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g 176 (258)
T cd00423 97 ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG 176 (258)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCC
Confidence 99885 4322 235666777887677764211 111 1 13557777777777775532 4789999987
Q ss_pred CCCCCcHHHHHHHHHHHHhc
Q 015201 374 VLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~y 393 (411)
... ....|+. +++..+.+
T Consensus 177 ~~k-~~~~~~~-~l~~i~~~ 194 (258)
T cd00423 177 FGK-TEEHNLE-LLRRLDAF 194 (258)
T ss_pred ccC-CHHHHHH-HHHHHHHH
Confidence 554 4344433 44444433
No 64
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.55 E-value=2.4 Score=39.48 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc----HhHHhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF----LERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~----l~~~~e~g 309 (411)
++..+++++.+.++|++.|-++ -.+.+++.|+ .++++.+.... ..+..+.-..... ++.+.+.|
T Consensus 13 ~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~-----~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGVDYIEVG---FPFASEDDFE-----QVRRLREALPN----ARLQALCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE---HCTSSHHHHH-----HHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEc---ccccCHHHHH-----Hhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhcc
Confidence 4566778888899999998775 3467777654 45567766664 2343443333222 44556799
Q ss_pred CcEEEcC-CCCC--------------HHH------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLD-WTVD--------------MAD------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d-~~~d--------------i~~------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+.+- ...| +.. ..+..|.++.+ +..|. -.-+++++.+.++++.+.. ...+.+
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~g-~~~i~l 156 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA--SRTDPEELLELAEALAEAG-ADIIYL 156 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT--GGSSHHHHHHHHHHHHHHT--SEEEE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc--ccccHHHHHHHHHHHHHcC-CeEEEe
Confidence 9998642 2222 222 22334543322 22221 2368899988888887763 334444
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
.-. -.-..|+.+..+++.+++.-
T Consensus 157 ~Dt---~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 157 ADT---VGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp EET---TS-S-HHHHHHHHHHHHHHS
T ss_pred eCc---cCCcCHHHHHHHHHHHHHhc
Confidence 322 22345777888888887653
No 65
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.46 E-value=6.4 Score=37.92 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e 307 (411)
+-.++.++...+.|+|++.+.-+.-.-.|+ +-+.-|++++.+.. +.|++++.. |.. . .+..+.+
T Consensus 80 ~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~i~~~~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 80 EEAISLTKFAEDVGADGFLVVTPYYNKPTQ----EGLYQHFKAIAEEV-----DLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 334566777789999999876654333343 45666888888876 468877753 432 2 3566666
Q ss_pred CCCcEEEc-CCCCCH---HHHHHHhCCCeeEEccCCcC
Q 015201 308 TGVDVIGL-DWTVDM---ADGRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 308 ~g~d~l~~-d~~~di---~~~~~~~g~~~~l~G~vd~~ 341 (411)
.+ +++.+ +...|+ .++++..+++..++.|-|..
T Consensus 151 ~~-~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d~~ 187 (285)
T TIGR00674 151 EP-NIVAIKEATGNLERISEIKAIAPDDFVVLSGDDAL 187 (285)
T ss_pred CC-CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECchHH
Confidence 54 56655 334444 44556666677777776653
No 66
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=92.42 E-value=5.9 Score=38.73 Aligned_cols=145 Identities=8% Similarity=0.134 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCC-------------------HHHHHHHH--HHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLP-------------------PHMWEQWS--EPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iS-------------------p~~f~ef~--~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
.+.+++..++|||.|-+---.. ..|| =++|++.. +.++.++.+.+++. | +++.+
T Consensus 33 ~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~--G--i~~~S 108 (347)
T COG2089 33 KELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKR--G--IIFFS 108 (347)
T ss_pred HHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHc--C--eEEEe
Confidence 4456677789999875543111 2333 24555544 45678999999987 4 34444
Q ss_pred cCCcc-cHhHHhcCCCcEEEcC--CCCCHHHHH--HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 296 NGNGG-FLERMKGTGVDVIGLD--WTVDMADGR--KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 296 CG~~~-~l~~~~e~g~d~l~~d--~~~di~~~~--~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
--.-. ..+.+..+++..+-+. ..+++.-++ .+.++.+.+.-|+ .+-+||.+.+.-+-+...+.-.+|.
T Consensus 109 SPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGm------a~~~ei~~av~~~r~~g~~~i~LLh- 181 (347)
T COG2089 109 SPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGM------ATIEEIEEAVAILRENGNPDIALLH- 181 (347)
T ss_pred cCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEccc------ccHHHHHHHHHHHHhcCCCCeEEEE-
Confidence 33322 4788888999988542 234444433 3345556555444 3577787666555554433233444
Q ss_pred CCCCCCCCcH--HHHHHHHHHHHhcC
Q 015201 371 GHGVLVGTPE--EAVAHFFEVGKSMK 394 (411)
Q Consensus 371 gc~i~~~tp~--Eni~a~~~a~~~yg 394 (411)
|.-..-+|. -|+.+|.+....|+
T Consensus 182 -C~s~YPap~ed~NL~~i~~l~~~Fn 206 (347)
T COG2089 182 -CTSAYPAPFEDVNLKAIPKLAEAFN 206 (347)
T ss_pred -ecCCCCCCHHHhhHHHHHHHHHHhC
Confidence 443334554 58889988888884
No 67
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.39 E-value=3.1 Score=43.72 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhH----HhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLER----MKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~----~~e~g 309 (411)
++-.+++++.+.++|+|.|-++-+ ..||+.|+.+ +++.+..+ +..+..+.-.....++. +.+.|
T Consensus 25 ~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~d~~~v-----~~i~~~~~----~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 25 VEEKLQIAKQLERLGVDVIEAGFP---ASSPGDFEAV-----KRIARTVK----NSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---CCChHHHHHH-----HHHHhhCC----CCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 345567788889999999866322 4688876543 55544332 44455555333333443 44677
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.+++
T Consensus 93 ~~~v~i 98 (513)
T PRK00915 93 APRIHT 98 (513)
T ss_pred CCEEEE
Confidence 777654
No 68
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.32 E-value=3.5 Score=43.07 Aligned_cols=71 Identities=28% Similarity=0.349 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H-hHH--hcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L-ERM--KGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l-~~~--~e~g 309 (411)
++.+++++.+.++|+|.|++.|.. |++.|+...+ ++..+++..| ++|+-+|++.+... + ..+ .+.|
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDta-Gll~P~~~~~--------LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG 225 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMA-ALLKPQPAYD--------IVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG 225 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCc-cCCCHHHHHH--------HHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC
Confidence 556677778889999999886654 5688877544 4556666543 68899999877652 3 433 4689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
+|.+.
T Consensus 226 ad~vD 230 (499)
T PRK12330 226 VDVVD 230 (499)
T ss_pred CCEEE
Confidence 99985
No 69
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=3.1 Score=40.76 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC------cc--cHhHHh
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN------GG--FLERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~------~~--~l~~~~ 306 (411)
+..++|++.+.++|...|+ .++..|+.+++..+-++++|++.+++. |..+++-+-+. ++ .++.+.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IF-----tsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~ 88 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIF-----TSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQ 88 (360)
T ss_pred hhHHHHHHHHHHcCcccee-----eecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHH
Confidence 4456888999999998885 358889999999999999999999998 67778777765 22 378899
Q ss_pred cCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-C---CCCcHHH
Q 015201 307 GTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-L---VGTPEEA 382 (411)
Q Consensus 307 e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~---~~tp~En 382 (411)
+.|++++-+|...+..+..+.-.+.+.+.=| +-.+.+++-.++.....-.-|.+. |+. | .|...|.
T Consensus 89 e~G~~glRlD~gfS~eei~~ms~~~lkieLN---------~S~it~~l~~l~~~~an~~nl~~c-HNyYPr~yTGLS~e~ 158 (360)
T COG3589 89 ELGVDGLRLDYGFSGEEIAEMSKNPLKIELN---------ASTITELLDSLLAYKANLENLEGC-HNYYPRPYTGLSREH 158 (360)
T ss_pred HhhhhheeecccCCHHHHHHHhcCCeEEEEc---------hhhhHHHHHHHHHhccchhhhhhc-ccccCCcccCccHHH
Confidence 9999999999998888887765433333322 222334555555554442222221 232 2 3567788
Q ss_pred HHHHHHHHHhcCCC
Q 015201 383 VAHFFEVGKSMKYD 396 (411)
Q Consensus 383 i~a~~~a~~~yg~~ 396 (411)
+...-+..++|+-+
T Consensus 159 f~~kn~~fk~~~i~ 172 (360)
T COG3589 159 FKRKNEIFKEYNIK 172 (360)
T ss_pred HHHHHHHHHhcCCc
Confidence 88888888888743
No 70
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.27 E-value=2.9 Score=40.72 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+...+.++.+++.|+|+|++.-..|. .+|.++.++. .+...+.+.. .+|++.+..++.. -+ ....+
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHh
Confidence 34445666888999999988877774 7999988775 3444445542 3789999988853 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 98 ~Gad~il~ 105 (299)
T COG0329 98 LGADGILV 105 (299)
T ss_pred cCCCEEEE
Confidence 89999853
No 71
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.24 E-value=3.4 Score=40.02 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH-hCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc-cH---hHHh
Q 015201 235 QAIADYIIYQVE-SGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e-~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~-~l---~~~~ 306 (411)
+.+.++++.+++ .|+++|++....|. .||.++.++++ +..++.+.. .+|++.++... +. -+ ....
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~----~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVL----EIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHH----HHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHH
Confidence 344456667788 99999988877774 79999887763 334444432 47888888443 33 23 5566
Q ss_pred cCCCcEEEc
Q 015201 307 GTGVDVIGL 315 (411)
Q Consensus 307 e~g~d~l~~ 315 (411)
+.|+|++.+
T Consensus 97 ~~Gad~v~v 105 (293)
T PRK04147 97 ELGYDAISA 105 (293)
T ss_pred HcCCCEEEE
Confidence 789999854
No 72
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.24 E-value=6.2 Score=38.31 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTGV 310 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g~ 310 (411)
+.+.++.+++.|+|++++....|. .+|.++.++++.-. .+.++. ..|++.|+.+++. -+ ....+.|+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~----~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIA----VSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHH----HHHhCC---CCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 345555777899999988777774 79999887765433 333332 4788888865433 23 44456787
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
|++.
T Consensus 101 dav~ 104 (296)
T TIGR03249 101 DGYL 104 (296)
T ss_pred CEEE
Confidence 7764
No 73
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=92.24 E-value=5.2 Score=36.85 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCEEEE-ecCCC-CCCCHHHHHHHHH--------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--
Q 015201 239 DYIIYQVESGAHCIQI-FDSWG-GQLPPHMWEQWSE--------------PYIREIVSLVRTKCPETPIVLYINGNGG-- 300 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i-~D~~~-~~iSp~~f~ef~~--------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~-- 300 (411)
+-++...++|||.+=+ +.+.. -++|+++.++... +-...+.+.+++. +. -+++.+|+..
T Consensus 14 eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~--~~-d~vQLHg~e~~~ 90 (210)
T PRK01222 14 EDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV--PL-DLLQLHGDETPE 90 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc--CC-CEEEECCCCCHH
Confidence 3456667889998743 33322 3899999888763 1233566666654 32 3556667654
Q ss_pred cHhHHhc-CCCcEE---EcCCCCCHHHHHHHhCC-CeeEE-------c-------------cCC-cCccCC--CHHHHHH
Q 015201 301 FLERMKG-TGVDVI---GLDWTVDMADGRKRLGN-DISVQ-------G-------------NVD-PACLFS--PLPALTD 352 (411)
Q Consensus 301 ~l~~~~e-~g~d~l---~~d~~~di~~~~~~~g~-~~~l~-------G-------------~vd-~~~L~g--t~eeV~~ 352 (411)
.+..+.+ .++.++ ++....++...++.++. +..+. | +++ |..|.| +||.|.+
T Consensus 91 ~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~~~~~p~~LAGGi~peNv~~ 170 (210)
T PRK01222 91 FCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPAGLAKPWILAGGLNPDNVAE 170 (210)
T ss_pred HHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhhccCCCEEEECCCCHHHHHH
Confidence 3555554 344444 23222234443332211 11111 1 010 111211 4554443
Q ss_pred HHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHHHHHhc
Q 015201 353 EIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 353 ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~a~~~y 393 (411)
. ++..++.|.=+++|=...+| -+++.+++|+++++.+
T Consensus 171 a----i~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 171 A----IRQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred H----HHhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 3 33445556777777766444 4778888888877654
No 74
>PRK07094 biotin synthase; Provisional
Probab=92.23 E-value=8.2 Score=37.79 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
++.+.+.|+..+.+.......+.. +++.++++.+++. +++.+.+ +.|... .++.+++.|++.+++.
T Consensus 79 ~~~~~~~g~~~i~l~gG~~~~~~~--------~~l~~l~~~i~~~-~~l~i~~-~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 79 AKKAYELGYRTIVLQSGEDPYYTD--------EKIADIIKEIKKE-LDVAITL-SLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred HHHHHHCCCCEEEEecCCCCCCCH--------HHHHHHHHHHHcc-CCceEEE-ecCCCCHHHHHHHHHcCCCEEEec
Confidence 344556799988776332223332 4567788888875 2544333 346543 5789999999988653
No 75
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.92 E-value=11 Score=39.03 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHhCCceeEEE--ecccHHHHHHHHHcCCCCccHHHHHH--HHhhCHH---HHHHHHH----HHHHHH
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLG--FVGAPWTIATYIVEGGTTRTYTTIKS--MCHTAPH---VLRTLLS----HLTQAI 237 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~--~~~gPft~a~~l~gg~~~~~~e~~l~--~l~~~Pe---~v~~ll~----~~~d~~ 237 (411)
+...++....|...+++++.++. .+..|-.+.. +..+ .+.+ +. .+++.|+ .+++++. .|.=..
T Consensus 193 ~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~-~~~~--~dav---LiG~~lm~~~d~~~~~~~L~~~~vKICGit~ 266 (454)
T PRK09427 193 LSIDLNRTRELAPLIPADVIVISESGIYTHAQVRE-LSPF--ANGF---LIGSSLMAEDDLELAVRKLILGENKVCGLTR 266 (454)
T ss_pred ceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHH-HHhc--CCEE---EECHHHcCCCCHHHHHHHHhccccccCCCCC
Confidence 33334555556666666654443 3345655433 2221 1111 11 2333332 3344422 233344
Q ss_pred HHHHHHHHHhCCCEEEE-ecC-CCCCCCHHHHHHHHH------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--c
Q 015201 238 ADYIIYQVESGAHCIQI-FDS-WGGQLPPHMWEQWSE------------PYIREIVSLVRTKCPETPIVLYINGNGG--F 301 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i-~D~-~~~~iSp~~f~ef~~------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~ 301 (411)
.+-++...++|||.+=+ +.+ +--.++|++.++... +-...+.+.+++.+ . -+++.+|+.. .
T Consensus 267 ~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~--l-D~vQLHG~e~~~~ 343 (454)
T PRK09427 267 PQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLS--L-AAVQLHGDEDQAY 343 (454)
T ss_pred HHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcC--C-CEEEeCCCCCHHH
Confidence 45567778999998743 433 334899999988764 22335555565542 2 3556677654 3
Q ss_pred HhHHhcC---CCcEE---EcCCC------------------------CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHH
Q 015201 302 LERMKGT---GVDVI---GLDWT------------------------VDMADGRKRLGNDISVQGNVDPACLFSPLPALT 351 (411)
Q Consensus 302 l~~~~e~---g~d~l---~~d~~------------------------~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~ 351 (411)
+..+.+. ++.+| ++... .|...+.........+.||+ +||.|.
T Consensus 344 ~~~l~~~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~~~~~~p~iLAGGL-------~peNV~ 416 (454)
T PRK09427 344 IDALREALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLPGQSLDNVLLAGGL-------NPDNCQ 416 (454)
T ss_pred HHHHHhhcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhhhcccCCEEEECCC-------CHHHHH
Confidence 4555431 23333 22111 12222111111112222222 566665
Q ss_pred HHHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHHHHHhc
Q 015201 352 DEIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 352 ~ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~a~~~y 393 (411)
+.+ ..++-|.=+++|-...|| -+++.+++|+++++.|
T Consensus 417 ~ai-----~~~P~gVDVsSGVE~~pG~KD~~Ki~~Fi~~vr~~ 454 (454)
T PRK09427 417 QAA-----QLGCAGLDFNSGVESAPGIKDAQKLASVFQTLRAY 454 (454)
T ss_pred HHH-----hcCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhhC
Confidence 543 246667888888877666 5889999999999875
No 76
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.89 E-value=4.7 Score=38.94 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC-Ccc-cH---hHHh
Q 015201 235 QAIADYIIYQVES-GAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING-NGG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~-G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG-~~~-~l---~~~~ 306 (411)
+.+.++++.+++. |++++.+....|. .+|.++.++++ +...+.... .+|++.++.+ ++. -+ ....
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~----~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIA----EIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHH
Confidence 3445666778888 9999988887774 79998888763 333444432 4678877743 343 23 5566
Q ss_pred cCCCcEEE
Q 015201 307 GTGVDVIG 314 (411)
Q Consensus 307 e~g~d~l~ 314 (411)
+.|+|++.
T Consensus 94 ~~Gad~v~ 101 (288)
T cd00954 94 ELGYDAIS 101 (288)
T ss_pred HcCCCEEE
Confidence 78999874
No 77
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.87 E-value=3.4 Score=40.49 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+++|++..+.|. .+|.++.++++.- ..+.+. +.+|++.|..+... -+ ....+.
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~---grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVAT----VVETVA---GRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHH----HHHHhC---CCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 3445566778899999998888774 7999998886543 333343 25788888876432 23 556678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 9998754
No 78
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.81 E-value=9 Score=35.84 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG-----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL 302 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l 302 (411)
++.+.|...+-++++.+.|+|++ +.+.+++ -+.|+. .-++-.+++.+++.- ++|+-+..=-|-. -+
T Consensus 29 ~~~vid~A~~dA~~leegG~Dav-ivEN~gD~Pf~k~v~~~t-----vaaMa~iv~~v~r~v-~iPvGvNVLrNd~vaA~ 101 (263)
T COG0434 29 LEAVIDRAVRDAAALEEGGVDAV-IVENYGDAPFLKDVGPET-----VAAMAVIVREVVREV-SIPVGVNVLRNDAVAAL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCChHH-----HHHHHHHHHHHHHhc-cccceeeeeccccHHHH
Confidence 45556666777889999999998 5565553 344433 445666777766553 6776554433322 23
Q ss_pred hHHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc-c-CCCHHHHHHHHHHHHHHhCCCC
Q 015201 303 ERMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC-L-FSPLPALTDEIQRVVKCAGSRG 365 (411)
Q Consensus 303 ~~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~-L-~gt~eeV~~ev~~~i~~~~~~g 365 (411)
..-.-.|.+-+-+ |+. -.+.+.+.+++.++.+.-+++..- . ++++ .+.+.++..++....-+
T Consensus 102 ~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDa 180 (263)
T COG0434 102 AIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEAVKDTVERGLADA 180 (263)
T ss_pred HHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHHHHHHHHccCCCE
Confidence 3333446555521 221 135556778888899999988853 2 3544 58888999998877667
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~ 390 (411)
.|++ |......+++|.++...+++
T Consensus 181 VI~t-G~~TG~~~d~~el~~a~~~~ 204 (263)
T COG0434 181 VIVT-GSRTGSPPDLEELKLAKEAV 204 (263)
T ss_pred EEEe-cccCCCCCCHHHHHHHHhcc
Confidence 7765 44444444555555554444
No 79
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=91.31 E-value=14 Score=35.30 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHh
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMK 306 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~ 306 (411)
+++.+.=.+.+++.++.|++.|||.|-+.-. .+++.=.+-+.|..+.+. +.. +.|+.+-+ -+...++.-.
T Consensus 17 ~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~----~~~~eE~~r~~~~v~~l~----~~~-~~plsIDT-~~~~v~eaaL 86 (261)
T PRK07535 17 EAIEAKDAAFIQKLALKQAEAGADYLDVNAG----TAVEEEPETMEWLVETVQ----EVV-DVPLCIDS-PNPAAIEAGL 86 (261)
T ss_pred HHHHcCCHHHHHHHHHHHHHCCCCEEEECCC----CCchhHHHHHHHHHHHHH----HhC-CCCEEEeC-CCHHHHHHHH
Confidence 4445556678888899999999999866533 344332234555555543 332 56754322 2222455555
Q ss_pred cC--CCcEEE-cCCC---C-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 307 GT--GVDVIG-LDWT---V-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 307 e~--g~d~l~-~d~~---~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
+. |.++++ +... . .+.++.+++|-.++++-. +..-.-.|.++..+..++.++.+.. ..+|+-||-+
T Consensus 87 ~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~-~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~ 164 (261)
T PRK07535 87 KVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM-DDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVL 164 (261)
T ss_pred HhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 54 999885 4321 1 245566778866666542 2221224566666666666665432 4679999876
No 80
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.27 E-value=5.6 Score=41.55 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|+|.|-++-+. .|++.|+- .+++.+ ...+..+..+.......++...+.|++.+
T Consensus 23 ~e~K~~ia~~L~~~Gv~~IE~G~p~---~~~~d~e~-----v~~i~~----~~~~~~i~a~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 23 PEEKLEIARKLDELGVDVIEAGSAI---TSEGEREA-----IKAVTD----EGLNAEICSFARAVKVDIDAALECDVDSV 90 (488)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCc---CCHHHHHH-----HHHHHh----cCCCcEEEeecccCHHHHHHHHhCCcCEE
Confidence 3455677888899999998664332 46666543 233332 22133334444433335778888898887
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 91 ~i 92 (488)
T PRK09389 91 HL 92 (488)
T ss_pred EE
Confidence 64
No 81
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.23 E-value=2.7 Score=39.72 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+...-..| ..+...++++.+++.+++.++..++-.....++...+.|++.+
T Consensus 18 ~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i 91 (265)
T cd03174 18 TEDKLEIAEALDEAGVDSIEVGSGASPKAVP------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEV 91 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCcCccccc------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEE
Confidence 4555677778889999998765433220002 1233445566666654344443444332346888999999998
Q ss_pred EcCC-CC--------------CHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 314 GLDW-TV--------------DMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 314 ~~d~-~~--------------di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.+-. .. ++..+ .+..| +.+..++-... -.-+++++.+.++++.+.+ ...+.+...
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt 168 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDT 168 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechh
Confidence 6421 11 12222 12234 33444432211 1257888888888777654 334444322
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+ ....|+.+..+++.+++...
T Consensus 169 --~-G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 169 --V-GLATPEEVAELVKALREALP 189 (265)
T ss_pred --c-CCcCHHHHHHHHHHHHHhCC
Confidence 2 23557778888888887653
No 82
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.89 E-value=8.1 Score=37.50 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~g 309 (411)
+.++++.+++.|++++++....|. .+|.++..+++. ...+.+. +.+|++.|..++.. -+ ....+.|
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~----~~~~~~~---g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIE----NAIDQIA---GRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHH----HHHHHhC---CCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 345566777899999988887774 799998877654 3333343 25788888887643 23 4556789
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|++.+
T Consensus 96 ad~v~v 101 (294)
T TIGR02313 96 ADAAMV 101 (294)
T ss_pred CCEEEE
Confidence 999854
No 83
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.74 E-value=1.7 Score=42.16 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
+++.+.++.+.++|+|.|.+.|..|. ++|....++ ++.+++..+++++-+|.+.+... + ..+ .+.|+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGV-GTPGQVRAV--------LEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCc-cCHHHHHHH--------HHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 45556667788899999988776664 788776553 44444444457899999988762 3 333 36799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 226 ~~id~ 230 (287)
T PRK05692 226 TVFDA 230 (287)
T ss_pred CEEEE
Confidence 98854
No 84
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=90.69 E-value=1.8 Score=40.45 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~ 312 (411)
+.++++.+.++|+|.|.+.|..|. ++|....+ +++.+++..+++++-+|.+.+... + .. -.+.|++.
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~v~~--------lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADTVGI-MTPEDVAE--------LVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTS--S-HHHHHH--------HHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHcCCeEEEeeCccCC-cCHHHHHH--------HHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 334455666779999988887765 78876543 456666665557899999988763 3 33 33679999
Q ss_pred EEc
Q 015201 313 IGL 315 (411)
Q Consensus 313 l~~ 315 (411)
+..
T Consensus 210 id~ 212 (237)
T PF00682_consen 210 IDG 212 (237)
T ss_dssp EEE
T ss_pred EEc
Confidence 853
No 85
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=90.57 E-value=6.7 Score=38.93 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH---HHHH------HHHHHHHHHHHHHhhCCCCCEEE
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM---WEQW------SEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~---f~ef------~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
++-++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =.|| =.-+..++++.+++..|.-++.+
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~v 223 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGI 223 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEE
Confidence 333555566666677788899999998875433 3777721 1111 13556677888877643326777
Q ss_pred EecCC----------c-c----cHhHHhcCCCcEEEcCCC-C----------CHHHHHHHhCCCeeEEccCC
Q 015201 294 YINGN----------G-G----FLERMKGTGVDVIGLDWT-V----------DMADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 294 H~CG~----------~-~----~l~~~~e~g~d~l~~d~~-~----------di~~~~~~~g~~~~l~G~vd 339 (411)
-+.+. . . +++.+.+.|+|.+++... . ....+|+.++-.+...|+++
T Consensus 224 Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 224 RLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred EECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 66532 1 1 235566779999987321 1 13445666654555566653
No 86
>PRK13753 dihydropteroate synthase; Provisional
Probab=90.49 E-value=17 Score=35.00 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=.+-+.|.++.+.+ . +.++ =++-... .++.-.+.|
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~----~--~~~I--SIDT~~~~va~~al~aG 96 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD----Q--MHRV--SIDSFQPETQRYALKRG 96 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh----C--CCcE--EEECCCHHHHHHHHHcC
Confidence 455566778889999999887633 3489999877777888877653 2 3443 2222223 357777899
Q ss_pred CcEEE-cCCCCC--HHHHHHHhCCCeeEEccC-----CcCc-c--CCC-HHHHHHHHHHHHHHhC----C-CCeEEeCCC
Q 015201 310 VDVIG-LDWTVD--MADGRKRLGNDISVQGNV-----DPAC-L--FSP-LPALTDEIQRVVKCAG----S-RGHILNLGH 372 (411)
Q Consensus 310 ~d~l~-~d~~~d--i~~~~~~~g~~~~l~G~v-----d~~~-L--~gt-~eeV~~ev~~~i~~~~----~-~gfIls~gc 372 (411)
+++++ +....| +.++...++-.+++|=+- .+.. . +.+ -++|.++.++.++.+. + ...||-||-
T Consensus 97 adiINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGi 176 (279)
T PRK13753 97 VGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGM 176 (279)
T ss_pred CCEEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC
Confidence 99985 433223 444445566667775431 1211 1 111 2345555555444432 2 589999999
Q ss_pred CCCC-CCcHHHHHHHH
Q 015201 373 GVLV-GTPEEAVAHFF 387 (411)
Q Consensus 373 ~i~~-~tp~Eni~a~~ 387 (411)
++.. .++.+|+.-+-
T Consensus 177 GF~k~k~~~~n~~ll~ 192 (279)
T PRK13753 177 GFFLSPAPETSLHVLS 192 (279)
T ss_pred CCCCCCChHHHHHHHH
Confidence 9852 45567766543
No 87
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=90.48 E-value=12 Score=35.81 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g 309 (411)
.++.++...++|+|++.+.-+.-...++ +-+..|++++++.. +.|++++.. |.. + .+..+.+.+
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~----~~l~~~~~~ia~~~-----~~pi~lYn~P~~~g~~ls~~~~~~L~~~p 154 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQ----EGLYAHFKAIAEAT-----DLPVILYNVPGRTGVNIEPETVLRLAEHP 154 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCH----HHHHHHHHHHHhcC-----CCCEEEEEChhHhCCCCCHHHHHHHhcCC
Confidence 3677778889999999876554332343 44668999998864 578877764 332 1 245555553
Q ss_pred CcEEEc-CCCCCH---HHHHHHhCCCeeEEccCCcC
Q 015201 310 VDVIGL-DWTVDM---ADGRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 310 ~d~l~~-d~~~di---~~~~~~~g~~~~l~G~vd~~ 341 (411)
++..+ +...|+ .++.+.+++++.++.+-|..
T Consensus 155 -~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~~ 189 (284)
T cd00950 155 -NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDAL 189 (284)
T ss_pred -CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChHh
Confidence 45444 222344 44556666677777666653
No 88
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.25 E-value=14 Score=35.68 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC----Cc-c--cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING----NG-G--FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG----~~-~--~l~~~~e 307 (411)
+-.++.++...++|+|++.+.-+.-.-.|+ +-+.-|++++++.. +.|++++.+. .. . .+..+.+
T Consensus 83 ~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~----~~i~~~~~~ia~~~-----~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 83 AEAIELTKFAEKAGADGALVVTPYYNKPTQ----EGLYQHFKAIAEAT-----DLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHHc
Confidence 344566777888999999876654333444 44557888888765 4688777653 22 1 2344444
Q ss_pred CCCcEEEc-CCCCCHHH---HHHHhCCCeeEEccCCcC
Q 015201 308 TGVDVIGL-DWTVDMAD---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 308 ~g~d~l~~-d~~~di~~---~~~~~g~~~~l~G~vd~~ 341 (411)
.+ ++..+ +...|+.. +.+..+++..++.|-|..
T Consensus 154 ~p-~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 190 (292)
T PRK03170 154 HP-NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL 190 (292)
T ss_pred CC-CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh
Confidence 43 45444 33345544 444456666666666553
No 89
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.16 E-value=16 Score=34.97 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=86.0
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE-EecCCcc-c-HhH-------HhcCCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL-YINGNGG-F-LER-------MKGTGV 310 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~-H~CG~~~-~-l~~-------~~e~g~ 310 (411)
.+..++.|+|++.+.=.+|+ + ++.-.+--+-++.+.++++ |.|++. +.-|... . .+. =.|+|.
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs---~--~E~~~l~~l~~v~~ea~~~--G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGS---E--YEHQSIKNIIQLVDAGLRY--GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEEEecCC---H--HHHHHHHHHHHHHHHHHHh--CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 44577899999987666663 2 3344555578899999998 788755 4555421 1 222 237899
Q ss_pred cEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHHHHHHH
Q 015201 311 DVIGLDWTV-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAVAHFFE 388 (411)
Q Consensus 311 d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni~a~~~ 388 (411)
|++=+.+.- ++.++.+..+-.+.+.||=. .+.+++-+.+++.++.++ .|..+ |=+| +..-|.+-++|+..
T Consensus 173 DiVK~~y~~~~f~~vv~a~~vPVviaGG~k-----~~~~~~L~~v~~ai~aGa-~Gv~~--GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 173 QIIKTYYVEEGFERITAGCPVPIVIAGGKK-----LPERDALEMCYQAIDEGA-SGVDM--GRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CEEecCCCHHHHHHHHHcCCCcEEEeCCCC-----CCHHHHHHHHHHHHHcCC-ceeee--chhhhccCCHHHHHHHHHH
Confidence 999776543 45555554444455555432 266889999999999543 34443 4444 44455566666666
Q ss_pred HHHhc
Q 015201 389 VGKSM 393 (411)
Q Consensus 389 a~~~y 393 (411)
.+++-
T Consensus 245 IVh~~ 249 (264)
T PRK08227 245 VVHEN 249 (264)
T ss_pred HHhCC
Confidence 66543
No 90
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.12 E-value=2 Score=41.32 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++++++++.+.+.|+|.|.+.|..|. ++|....++ ++.+++..|++++-+|.+.+... + .. -.+.|+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIGV-ATPAQVRRL--------LEAVLERFPDEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCc-cCHHHHHHH--------HHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 44556666777889999988777665 788776554 44444444567899999988752 3 33 336799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 220 ~~id~ 224 (274)
T cd07938 220 RRFDS 224 (274)
T ss_pred CEEEE
Confidence 98753
No 91
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.09 E-value=14 Score=35.65 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhC--CCCCEEEEecCCcccHhHHhcCC
Q 015201 234 TQAIADYIIYQV-ESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKC--PETPIVLYINGNGGFLERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~-e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~--~g~~~~~H~CG~~~~l~~~~e~g 309 (411)
++.-+++++.++ +.|++.|-+ +.+ .||+.| ...+++.+.-...+ .+..+.-+. .+..-++...++|
T Consensus 18 ~e~K~~i~~~L~~~~Gv~~IEv----g~~~~s~~e~-----~av~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~A~~~g 87 (280)
T cd07945 18 PSEKLNIAKILLQELKVDRIEV----ASARVSEGEF-----EAVQKIIDWAAEEGLLDRIEVLGFV-DGDKSVDWIKSAG 87 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEe----cCCCCCHHHH-----HHHHHHHHHhhhhccccCcEEEEec-CcHHHHHHHHHCC
Confidence 345567788875 459999865 334 789776 23344443221110 012222232 2222477778888
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.+++
T Consensus 88 ~~~i~i 93 (280)
T cd07945 88 AKVLNL 93 (280)
T ss_pred CCEEEE
Confidence 888754
No 92
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.09 E-value=3.7 Score=40.60 Aligned_cols=134 Identities=20% Similarity=0.350 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCEEEEecCCC-CCCC----HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-
Q 015201 227 RTLLSHLTQAIADYIIYQVESG--AHCIQIFDSWG-GQLP----PHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN- 298 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G--~d~i~i~D~~~-~~iS----p~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~- 298 (411)
.++.+.+.++....++++.++| +|.|+++.-.. +|+- +..|.. +.-+++.-++++++..|++++++|+..-
T Consensus 102 ~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~-~a~ll~ag~~AVr~~~p~~kV~lH~~~~~ 180 (332)
T PF07745_consen 102 DQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDN-LAKLLNAGIKAVREVDPNIKVMLHLANGG 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHH-HHHHHHHHHHHHHTHSSTSEEEEEES-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHH-HHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 4566677888888889999988 57888886433 3554 455544 4556777788899888889999998743
Q ss_pred -c---c-cHhHHhcCC--CcEEEcCC----CC-------CHHHHHHHhCCCeeEE--c------cCCcCc-c--------
Q 015201 299 -G---G-FLERMKGTG--VDVIGLDW----TV-------DMADGRKRLGNDISVQ--G------NVDPAC-L-------- 343 (411)
Q Consensus 299 -~---~-~l~~~~e~g--~d~l~~d~----~~-------di~~~~~~~g~~~~l~--G------~vd~~~-L-------- 343 (411)
. . +++.+...| +|++.+.. .. .+..+.++|++++.+. | +-|... .
T Consensus 181 ~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~ 260 (332)
T PF07745_consen 181 DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLIS 260 (332)
T ss_dssp SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGT
T ss_pred chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccC
Confidence 2 2 457777754 67775431 11 3566788898766662 2 001110 0
Q ss_pred --CCCHHHHHHHHHHHHHHh
Q 015201 344 --FSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 344 --~gt~eeV~~ev~~~i~~~ 361 (411)
--|++.-++.++++++..
T Consensus 261 ~yp~t~~GQ~~~l~~l~~~v 280 (332)
T PF07745_consen 261 GYPATPQGQADFLRDLINAV 280 (332)
T ss_dssp TS-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 137888778777777754
No 93
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=90.05 E-value=12 Score=38.93 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
|+..+++.|+.-+ .++ ++.+++++.+++. ++........+.+ .++.+++.|+..+++
T Consensus 245 ~~~~i~f~Dd~f~-~~~--------~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 245 EVREFFFDDDTFT-DDK--------PRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred CCcEEEEeCCCCC-CCH--------HHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 7788877776432 233 4566777777765 4443333333343 478899999998865
No 94
>PRK08508 biotin synthase; Provisional
Probab=89.80 E-value=12 Score=36.02 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~~d 316 (411)
.++...+.|+..+.+.++.-+ ++. ....|+.++++.+++.+++ +.+|.| |... .+..+++.|++.++.+
T Consensus 48 ~a~~a~~~g~~~~~lv~sg~~-~~~-----~~~e~~~ei~~~ik~~~p~--l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 48 EAKMAKANGALGFCLVTSGRG-LDD-----KKLEYVAEAAKAVKKEVPG--LHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred HHHHHHHCCCCEEEEEeccCC-CCc-----ccHHHHHHHHHHHHhhCCC--cEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 333444569988877544333 232 2457888999999987433 345655 5544 4788999999999753
No 95
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.77 E-value=11 Score=35.72 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=88.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC--C
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW--T 318 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~--~ 318 (411)
++...++|+..+ ....|-..-||.-|+.+....++.+.+..++. |++++- .--+...++.+.+ .+|++-+.. .
T Consensus 35 a~~~~~~g~~~~-r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~--Gl~~~T-ev~d~~~v~~~~e-~vdilqIgs~~~ 109 (250)
T PRK13397 35 ASSAKKLGYNYF-RGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF--GLLSVS-EIMSERQLEEAYD-YLDVIQVGARNM 109 (250)
T ss_pred HHHHHHcCCCEE-EecccCCCCCCcccCCCCHHHHHHHHHHHHHc--CCCEEE-eeCCHHHHHHHHh-cCCEEEECcccc
Confidence 334667898876 44555567899999999999899998888887 677543 2222335777777 599987643 2
Q ss_pred CCHHHHH--HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH---HHHHHHHHHHhc
Q 015201 319 VDMADGR--KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE---AVAHFFEVGKSM 393 (411)
Q Consensus 319 ~di~~~~--~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E---ni~a~~~a~~~y 393 (411)
.+..-++ .+.|..+.+-- -...|++|+...+..+.+. |...++|.-=|....+++.+ |+.++...-+.+
T Consensus 110 ~n~~LL~~va~tgkPVilk~-----G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 110 QNFEFLKTLSHIDKPILFKR-----GLMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT 183 (250)
T ss_pred cCHHHHHHHHccCCeEEEeC-----CCCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHh
Confidence 2333333 22332221111 1236999999999887754 45578887644444445544 555555444446
Q ss_pred C
Q 015201 394 K 394 (411)
Q Consensus 394 g 394 (411)
+
T Consensus 184 ~ 184 (250)
T PRK13397 184 D 184 (250)
T ss_pred C
Confidence 5
No 96
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.59 E-value=12 Score=36.37 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHh-cCCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMK-GTGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~-e~g~d~ 312 (411)
++.++...++|+|++.+.-++-...|+ +-+.-|++.+.+.. +.|++++.+.... .+..+. +.+ ++
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~----~~i~~~f~~va~~~-----~lpi~lYn~~g~~l~~~~l~~L~~~~p-ni 160 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQ----EGLAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAERCP-NL 160 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEcCCCCCCCHHHHHHHHhhCC-CE
Confidence 456667788999999886665444454 55667888888765 4677665554322 245555 543 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEccCC
Q 015201 313 IGL-DWTVDMAD---GRKRLGNDISVQGNVD 339 (411)
Q Consensus 313 l~~-d~~~di~~---~~~~~g~~~~l~G~vd 339 (411)
+.+ +...|+.. +.+..+++..++.|.|
T Consensus 161 ~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d 191 (303)
T PRK03620 161 VGFKDGVGDIELMQRIVRALGDRLLYLGGLP 191 (303)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCeEEEeCCC
Confidence 555 33446554 4445566666666654
No 97
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=89.58 E-value=8.1 Score=37.97 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQV-ESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~-e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.+++-++.+.+--.++++++. ++|+|.|.+....++ --+++.|.+ ..+++.+.+ ++|+++-+||
T Consensus 63 ~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~----~Vk~V~eav-----d~PL~Id~s~ 133 (319)
T PRK04452 63 PEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAK----TVEEVLQAV-----DVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHH----HHHHHHHhC-----CCCEEEecCC
Confidence 44566666666555577888887 899999988754443 235555544 333443333 7899899999
Q ss_pred Cc----ccHhHHhc-C-CCc-EE-Ec--CCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-CC
Q 015201 298 NG----GFLERMKG-T-GVD-VI-GL--DWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-RG 365 (411)
Q Consensus 298 ~~----~~l~~~~e-~-g~d-~l-~~--d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~g 365 (411)
|. ..++.-.+ + |-. .+ +. +..-.+..+.+.||-.+....-.| .+.. +..-+.+...| + ..
T Consensus 134 n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D-------ln~a-k~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 134 NPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD-------INLA-KQLNILLTELGVPRER 205 (319)
T ss_pred CCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH-------HHHH-HHHHHHHHHcCCCHHH
Confidence 63 23544333 3 232 33 22 222235566677775444433122 2222 22223333444 3 67
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+++-|+. .+-++..|.....++..|..
T Consensus 206 IviDP~~-~~lg~g~e~~~~~~e~IR~a 232 (319)
T PRK04452 206 IVMDPTT-GALGYGIEYSYSVMERIRLA 232 (319)
T ss_pred EEEeCCc-ccccCCHHHHHHHHHHHHHH
Confidence 8999986 34455555555555555544
No 98
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=89.57 E-value=2.3 Score=43.92 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..+.++.+.++|+|.|++.|..| ++.|....+ ++..+++.. ++|+-+|.+.+... + ..+ .+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAG-ILTPYVAYE--------LVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCC
Confidence 4445666677889999998876554 588877554 566666654 57899999887652 3 333 36899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 224 d~vD~ 228 (448)
T PRK12331 224 DIIDT 228 (448)
T ss_pred CEEEe
Confidence 99853
No 99
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=89.51 E-value=15 Score=36.33 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHHHHh-CCCEEEEecCCCC---C---------------CCHHHHHHHH-----------HHHHHHHHHHHHhhCCC
Q 015201 239 DYIIYQVES-GAHCIQIFDSWGG---Q---------------LPPHMWEQWS-----------EPYIREIVSLVRTKCPE 288 (411)
Q Consensus 239 ~~~~~~~e~-G~d~i~i~D~~~~---~---------------iSp~~f~ef~-----------~Py~k~i~~~i~~~~~g 288 (411)
+.+..+++. +++.+.+-|..-+ + +|++.+++++ .+..+++++..+++ |
T Consensus 99 ~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~--g 176 (325)
T cd01306 99 PELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARAR--G 176 (325)
T ss_pred HHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHC--C
Confidence 334445543 5888888885432 3 5666655553 36677888999988 7
Q ss_pred CCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHH--HhCCCeeEEccCCcCccC-CCHHHHHHHHHHHHHHhCCCC
Q 015201 289 TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRK--RLGNDISVQGNVDPACLF-SPLPALTDEIQRVVKCAGSRG 365 (411)
Q Consensus 289 ~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~--~~g~~~~l~G~vd~~~L~-gt~eeV~~ev~~~i~~~~~~g 365 (411)
+|+..|.+.....++...+.|+++.. +.++...++. ..|- .+++| . |..+. ++... ...++++++.+ -.
T Consensus 177 l~vasH~d~~~~~v~~a~~~Gv~~~E--~p~t~e~a~~a~~~G~-~vv~g-a-pn~lrg~s~~g-~~~~~~ll~~G--v~ 248 (325)
T cd01306 177 IPLASHDDDTPEHVAEAHELGVVISE--FPTTLEAAKAARELGL-QTLMG-A-PNVVRGGSHSG-NVSARELAAHG--LL 248 (325)
T ss_pred CcEEEecCCChHHHHHHHHCCCeecc--CCCCHHHHHHHHHCCC-EEEec-C-cccccCccccc-cHhHHHHHHCC--Ce
Confidence 89999987765678888888988764 3445444443 3343 33444 2 33333 22111 12244455432 24
Q ss_pred eEEeCCCC
Q 015201 366 HILNLGHG 373 (411)
Q Consensus 366 fIls~gc~ 373 (411)
.++++++.
T Consensus 249 ~al~SD~~ 256 (325)
T cd01306 249 DILSSDYV 256 (325)
T ss_pred EEEEcCCC
Confidence 68888874
No 100
>PRK06256 biotin synthase; Validated
Probab=89.44 E-value=21 Score=35.14 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~ 314 (411)
++.++.+.+.|+..+++.....+.-.+ -.+++.++++.+++. .++. ++.+ |... .+..+++.|++.++
T Consensus 97 ~~~~~~~~~~g~~~~~l~~~g~~p~~~------~~~~~~e~i~~i~~~-~~i~--~~~~~g~l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 97 IEAAKEAIEEGAGTFCIVASGRGPSGK------EVDQVVEAVKAIKEE-TDLE--ICACLGLLTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHCCCCEEEEEecCCCCCch------HHHHHHHHHHHHHhc-CCCc--EEecCCcCCHHHHHHHHHhCCCEEe
Confidence 333444566787766555433322111 136778888888875 2432 2333 4443 46889999999886
Q ss_pred cC
Q 015201 315 LD 316 (411)
Q Consensus 315 ~d 316 (411)
+.
T Consensus 168 ~~ 169 (336)
T PRK06256 168 HN 169 (336)
T ss_pred cC
Confidence 53
No 101
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.27 E-value=10 Score=39.66 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHH
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWE 268 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ 268 (411)
+--+++++.+.++|+|.|-++-+ -.|+..|+
T Consensus 23 e~K~~ia~~L~~~GV~~IEvG~p---~~s~~d~e 53 (494)
T TIGR00973 23 EEKLQIALALERLGVDIIEAGFP---VSSPGDFE 53 (494)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC---CCCHHHHH
Confidence 44567788889999999865322 24676664
No 102
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=89.18 E-value=2 Score=41.55 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++.+....|. .+|.+++++++ +...+.++. .+|++.++-+... -+ ....+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELL----EIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHH----HHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhh
Confidence 44456677888999999988887774 79999987763 344555543 5788877665432 23 55667
Q ss_pred CCCcEEE
Q 015201 308 TGVDVIG 314 (411)
Q Consensus 308 ~g~d~l~ 314 (411)
.|+|++.
T Consensus 95 ~Gad~v~ 101 (289)
T PF00701_consen 95 AGADAVL 101 (289)
T ss_dssp TT-SEEE
T ss_pred cCceEEE
Confidence 8999874
No 103
>PLN02417 dihydrodipicolinate synthase
Probab=89.18 E-value=5.4 Score=38.39 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+++|++....|. .+|.++.++.+ +...+.+.. .+|++.|+.++.. -+ ....+.
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGG---KIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHH----HHHHHHhCC---CCcEEEECCCccHHHHHHHHHHHHHc
Confidence 3445666778899999988887774 79999888753 333444432 4788887766432 23 445678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 96 Gadav~~ 102 (280)
T PLN02417 96 GMHAALH 102 (280)
T ss_pred CCCEEEE
Confidence 9998754
No 104
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=88.99 E-value=11 Score=37.70 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
+++.++.+.+.|+..+. ...+-.--||.-|+.+....++.+.+..++. |++++- ..-+...++.+.++ +|++-+.
T Consensus 134 ~~~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~--Gl~~~t-~v~d~~~~~~l~~~-vd~lkI~ 208 (360)
T PRK12595 134 VEAVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEY--GLAVIS-EIVNPADVEVALDY-VDVIQIG 208 (360)
T ss_pred HHHHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHc--CCCEEE-eeCCHHHHHHHHHh-CCeEEEC
Confidence 33445556678887653 3334456777889999999999999998887 677543 22333357778888 8988664
Q ss_pred C--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CCCC-C-CCCcHHHHHHHHHH
Q 015201 317 W--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GHGV-L-VGTPEEAVAHFFEV 389 (411)
Q Consensus 317 ~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc~i-~-~~tp~Eni~a~~~a 389 (411)
. ..+..-+++ ..|..+.+-- -+..|.+|+...+..+... |...++|.- |... | ++-..-|+.++...
T Consensus 209 s~~~~n~~LL~~~a~~gkPVilk~-----G~~~t~~e~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 209 ARNMQNFELLKAAGRVNKPVLLKR-----GLSATIEEFIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred cccccCHHHHHHHHccCCcEEEeC-----CCCCCHHHHHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 2 234433333 2332222211 1236999999998888754 455788875 3322 2 11112277777765
Q ss_pred HHhcCC
Q 015201 390 GKSMKY 395 (411)
Q Consensus 390 ~~~yg~ 395 (411)
-+.|+.
T Consensus 283 k~~~~~ 288 (360)
T PRK12595 283 KQETHL 288 (360)
T ss_pred HHHhCC
Confidence 555763
No 105
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.84 E-value=2.9 Score=40.33 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d 311 (411)
++.++++.+.++|++.|.+.|..|. ++|....+ +++.+++..|+.++-+|.+-+... + .. -.+.|++
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~--------l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLGI-LSPFETYT--------YISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCC-CCHHHHHH--------HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 5556666778889999988777665 77876444 455555544567888999887652 3 33 3467999
Q ss_pred EEE
Q 015201 312 VIG 314 (411)
Q Consensus 312 ~l~ 314 (411)
.++
T Consensus 219 ~vd 221 (280)
T cd07945 219 GLH 221 (280)
T ss_pred EEE
Confidence 885
No 106
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=88.58 E-value=17 Score=33.50 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=76.6
Q ss_pred HHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE--EEEecCCcc-cHhHHhcCCCcEEEcCC----
Q 015201 245 VESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI--VLYINGNGG-FLERMKGTGVDVIGLDW---- 317 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~--~~H~CG~~~-~l~~~~e~g~d~l~~d~---- 317 (411)
.+.+.|.|+++.+ .+|+.+ +.+++.. +.++ .++.-.... .........+|.+-+|.
T Consensus 72 ~~~~ld~VQlHG~----e~~~~~------------~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~ 134 (208)
T COG0135 72 EELGLDAVQLHGD----EDPEYI------------DQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPG 134 (208)
T ss_pred HhcCCCEEEECCC----CCHHHH------------HHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCC
Confidence 3567899998655 555543 3444432 2344 334433333 22333344566665543
Q ss_pred -------CCCHHHHHHH-hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC-cHHHHHHHHH
Q 015201 318 -------TVDMADGRKR-LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT-PEEAVAHFFE 388 (411)
Q Consensus 318 -------~~di~~~~~~-~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t-p~Eni~a~~~ 388 (411)
..|...+... ...+..+.||++| +.|.+.|+...+-|.=+|+|-...||. +++.++++++
T Consensus 135 ~~GGtG~~fDW~~l~~~~~~~~~~LAGGL~p-----------~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~ 203 (208)
T COG0135 135 LPGGTGQTFDWNLLPKLRLSKPVMLAGGLNP-----------DNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFFE 203 (208)
T ss_pred CCCCCCcEECHHHhccccccCCEEEECCCCH-----------HHHHHHHHhcCCceEEeccccccCCCCCCHHHHHHHHH
Confidence 1355565554 5566888898887 456677777666788899998888775 7899999999
Q ss_pred HHHhc
Q 015201 389 VGKSM 393 (411)
Q Consensus 389 a~~~y 393 (411)
.++.+
T Consensus 204 ~vk~~ 208 (208)
T COG0135 204 AVKRA 208 (208)
T ss_pred HHhcC
Confidence 99864
No 107
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=88.52 E-value=2.6 Score=43.70 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++.++.++.+.++|+|.|++.|..| ++.|....+ ++..+++.. ++|+-+|.+.+... + ..+ .+.|+
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAG-LLTPKRAYE--------LVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccC-CcCHHHHHH--------HHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 5556667778899999998877655 578876544 455666554 47899999887652 3 433 36799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 223 d~vD 226 (467)
T PRK14041 223 DMFD 226 (467)
T ss_pred CEEE
Confidence 9985
No 108
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=88.37 E-value=19 Score=37.78 Aligned_cols=32 Identities=3% Similarity=-0.126 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHH
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQ 269 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~e 269 (411)
+--+++++.+.++|+|.|-++- .-.||++++-
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~~e~e~ 137 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF---PGSSEEEFEA 137 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCCCHHHHHH
Confidence 3445677888899999886633 2467888764
No 109
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.30 E-value=3.2 Score=39.19 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~ 312 (411)
+.+.++.+.++|++.|.+.|..| .++|+.++++ ++.+++..+++++-+|.+-+... + .. -.+.|++.
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~l--------i~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~ 218 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVG-LATPEEVAEL--------VKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR 218 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE
Confidence 34555567788999998887755 5999887765 44444444347889999988752 3 22 23579988
Q ss_pred EE
Q 015201 313 IG 314 (411)
Q Consensus 313 l~ 314 (411)
+.
T Consensus 219 id 220 (265)
T cd03174 219 VD 220 (265)
T ss_pred EE
Confidence 74
No 110
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.14 E-value=3.4 Score=39.33 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+.+.+.++...++|+|.|.+.|..|. +.|+...++ ++.++++.+.+++-+|.+-+... + .. -.+.|+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa 211 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGA-MLPDDVRER--------VRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGA 211 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC-cCHHHHHHH--------HHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCC
Confidence 34555666777899999988777765 788775553 44555544234789999988652 2 22 336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 212 ~~vd 215 (263)
T cd07943 212 TRID 215 (263)
T ss_pred CEEE
Confidence 9874
No 111
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=88.11 E-value=11 Score=38.69 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=76.6
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE--EecCCc-ccHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL--YINGNG-GFLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~--H~CG~~-~~l~~~~e~g~d~l~~d 316 (411)
+++.+.++|+|++.+.... +.. ..+++++.++++ |.++++ .+|... ..+....+.|+|.+.+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~----~~~--------~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA----DDS--------TIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecCC----ChH--------HHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7778899999999765321 110 135677788876 555554 244332 23555677899998643
Q ss_pred CC--------CC---HHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHH
Q 015201 317 WT--------VD---MADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAH 385 (411)
Q Consensus 317 ~~--------~d---i~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a 385 (411)
.. .. +.++++.++-.+.+.|||++ +.+.++++.+. .++++++. =+...-|.+.+++
T Consensus 139 pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~-----------~n~~~~l~aGA-dgv~vGsa-I~~~~d~~~~~~~ 205 (430)
T PRK07028 139 VGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDA-----------ETAAKAVAAGA-DIVIVGGN-IIKSADVTEAARK 205 (430)
T ss_pred eccchhhcCCChHHHHHHHHhhCCCcEEEECCCCH-----------HHHHHHHHcCC-CEEEEChH-HcCCCCHHHHHHH
Confidence 21 11 33444444444667787765 23455555433 35555544 1223346677888
Q ss_pred HHHHHHhcCCCCCC
Q 015201 386 FFEVGKSMKYDNSS 399 (411)
Q Consensus 386 ~~~a~~~yg~~~~~ 399 (411)
+.+..++|-.-+++
T Consensus 206 l~~~i~~~~~~~~~ 219 (430)
T PRK07028 206 IREAIDSGKPVKID 219 (430)
T ss_pred HHHHHhccCCcccc
Confidence 88888777554443
No 112
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.09 E-value=15 Score=35.35 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-----------
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG-----GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN----------- 298 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~-----~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~----------- 298 (411)
+..+++++.+.++|++.|-++-+.. .+++.+.|+. ++.+.+..++.++..++.|.
T Consensus 21 ~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~---------i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~ 91 (275)
T cd07937 21 EDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWER---------LRELRKAMPNTPLQMLLRGQNLVGYRHYPDD 91 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHH---------HHHHHHhCCCCceehhcccccccCccCCCcH
Confidence 4445567888899999886654321 1344444332 33333332345666676652
Q ss_pred -cc-cHhHHhcCCCcEEEcC-CCCCHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 299 -GG-FLERMKGTGVDVIGLD-WTVDMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 299 -~~-~l~~~~e~g~d~l~~d-~~~di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
.. .++...+.|++.+.+- ...|+..+ .+..|. .+..+++... -.-+++.+.+.++++.+.+.. .+
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~---~i 166 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK--HVEGAICYTGSPVHTLEYYVKLAKELEDMGAD---SI 166 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC---EE
Confidence 11 3566778899998653 33344332 233453 3334554322 236888888888887775422 33
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+...++. -..|+.+..+++.+++.
T Consensus 167 ~l~DT~G-~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 167 CIKDMAG-LLTPYAAYELVKALKKE 190 (275)
T ss_pred EEcCCCC-CCCHHHHHHHHHHHHHh
Confidence 3333333 33467788888888764
No 113
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=88.00 E-value=3.1 Score=43.08 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g 309 (411)
.++..+.++.+.++|+|.|++.|..| ++.|+...+ +++.+++. +++|+-+|.+.+... + .. -.+.|
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG-~l~P~~v~~--------Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAG 231 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAG-ILTPKAAKE--------LVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAG 231 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHH--------HHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcC
Confidence 35666777788899999998866554 588877555 44455554 368899999887652 3 33 34689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 232 ad~vD 236 (468)
T PRK12581 232 ADRID 236 (468)
T ss_pred CCEEE
Confidence 99984
No 114
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=87.94 E-value=20 Score=34.19 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCcccH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG-----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGGFL 302 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~~l 302 (411)
++.+.+..++-++++.+.|+|+|.+ +.+++ -++|+. .-.+-+++..+++.. .+|+- +..++...-+
T Consensus 23 ~~~i~e~A~~ea~~l~~~GvD~viv-eN~~d~P~~~~~~p~t-----va~m~~i~~~v~~~~-~~p~GvnvL~nd~~aal 95 (257)
T TIGR00259 23 LNAVIDKAWKDAMALEEGGVDAVMF-ENFFDAPFLKEVDPET-----VAAMAVIAGQLKSDV-SIPLGINVLRNDAVAAL 95 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-ecCCCCCCcCCCCHHH-----HHHHHHHHHHHHHhc-CCCeeeeeecCCCHHHH
Confidence 5566677788889999999999965 44443 244443 345667777777654 34542 2333333335
Q ss_pred hHHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 303 ERMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 303 ~~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
..-...|.+-+-+ |+. -.+...++.++.++.+..+|.+.. -.-..-.+.+.++..+..+..-+.
T Consensus 96 ~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDav 175 (257)
T TIGR00259 96 AIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAV 175 (257)
T ss_pred HHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEE
Confidence 5444566655521 221 145567888898899999998852 111122355556666655543344
Q ss_pred EEe
Q 015201 367 ILN 369 (411)
Q Consensus 367 Ils 369 (411)
|++
T Consensus 176 ivt 178 (257)
T TIGR00259 176 ILS 178 (257)
T ss_pred EEC
Confidence 443
No 115
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=87.90 E-value=8.5 Score=39.53 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCcc-c-H
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNGG-F-L 302 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~~-~-l 302 (411)
..++.++.....+.+..+.++||..|++.++.-.+ +.-+. ...+++.+..+.+.-.+..+++-. -|+.. . .
T Consensus 179 lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~-----l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a~ 253 (765)
T KOG2263|consen 179 LSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEK-----LQAFKGAYAELESTLSGLNVLLATYFADVPAEAY 253 (765)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHH-----HHHHHHHHHHHHhhccccceeehhhhccCCHHHH
Confidence 56788888888999999999999999998886542 33322 223344444444322122333322 35554 3 5
Q ss_pred hHHhcC-CCcEEEcCC---CCCHHHHHHHhCC-CeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 303 ERMKGT-GVDVIGLDW---TVDMADGRKRLGN-DISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 303 ~~~~e~-g~d~l~~d~---~~di~~~~~~~g~-~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
+.+..+ |+.++++|- .-.+..++..+|. ++.+.|-||-..+ ..+-..--.-+.+++...|..+.+++++|++.
T Consensus 254 ~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlL 332 (765)
T KOG2263|consen 254 KTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLL 332 (765)
T ss_pred HHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhh
Confidence 667776 488888764 2357777888875 5666788887654 34444455666777888888899999999974
No 116
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=87.63 E-value=3.1 Score=44.42 Aligned_cols=70 Identities=26% Similarity=0.282 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..+.++.+.++|+|.|++.|..|. +.|.... +++..+++.. ++|+-+|++-+... + ..+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~-~~P~~v~--------~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGI-LTPKAAY--------ELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC-cCHHHHH--------HHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 45566677888899999988776665 7776643 4455666554 47888999877652 3 333 36799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 219 ~~vd 222 (582)
T TIGR01108 219 DGID 222 (582)
T ss_pred CEEE
Confidence 9985
No 117
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.60 E-value=2.9 Score=44.71 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++.++.++.+.++|+|.|++.|..|. +.|... .++++.+++.. ++|+-+|++.+... + .. -.+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~-~~P~~~--------~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGL-LTPYAA--------YELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCC-cCHHHH--------HHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence 55566777888899999988877665 777765 44566666654 47889999877652 3 33 336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 224 d~vD 227 (592)
T PRK09282 224 DIID 227 (592)
T ss_pred CEEE
Confidence 9984
No 118
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.57 E-value=13 Score=34.52 Aligned_cols=126 Identities=11% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhc-CC-CcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKG-TG-VDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e-~g-~d~l~ 314 (411)
+|++.+.++|+|.|.++--. .+...++++.+|+. |....+-.+-.+. .++.+.+ .. +-+++
T Consensus 72 ~~i~~~~~~gad~i~~H~Ea-------------~~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 72 RIIPDFAKAGASMITFHVEA-------------SEHVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHhCCCEEEEcccC-------------cccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 56678889999999875332 13467788999998 5556555555554 4544443 32 22234
Q ss_pred cCCCC-----------CHHHHHHHhCC-----CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC
Q 015201 315 LDWTV-----------DMADGRKRLGN-----DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT 378 (411)
Q Consensus 315 ~d~~~-----------di~~~~~~~g~-----~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t 378 (411)
++.+. .+.++++...+ .+.+-|||++ +.++++++.+ ..+++++++ =+..+-
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~-----------eni~~l~~aG-Ad~vVvGSa-If~~~d 203 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV-----------DNIREIAEAG-ADMFVAGSA-IFGQPD 203 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH-----------HHHHHHHHcC-CCEEEEeHH-HhCCCC
Confidence 43211 25555555431 2556777765 3445555543 347777765 122334
Q ss_pred cHHHHHHHHHHHHh
Q 015201 379 PEEAVAHFFEVGKS 392 (411)
Q Consensus 379 p~Eni~a~~~a~~~ 392 (411)
+.++++.+.+..++
T Consensus 204 ~~~~i~~l~~~~~~ 217 (220)
T PRK08883 204 YKAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777766554
No 119
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=87.44 E-value=4.2 Score=39.01 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+++.++++.+.++|++.|.+.|..|. ++|+...+++ +.+++..|++++-+|.+-+... + .. -.+.|+
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~v~~lv--------~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa 221 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGG-TLPHEIAEIV--------KEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGA 221 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHHH--------HHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCC
Confidence 33444555666789999988777765 8887765544 4555444457899999987652 2 22 235799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 222 ~~id 225 (273)
T cd07941 222 TQVQ 225 (273)
T ss_pred CEEE
Confidence 9885
No 120
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.36 E-value=3.7 Score=39.26 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC--CCEEEEecCCccc-H---hHHhcCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE--TPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g--~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
++.+.++.+.++|++.|.+.|..|. +.|+...++ ++.+++..++ +++-+|.+-+... + -.-.+.|
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG 214 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVGY-LTPEEFGEL--------IKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAG 214 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhC
Confidence 3344555667789999988777765 788776653 4445444433 6889999887652 2 2233679
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 215 ~~~iD 219 (268)
T cd07940 215 ARQVE 219 (268)
T ss_pred CCEEE
Confidence 99874
No 121
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=87.26 E-value=18 Score=36.42 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQV-ESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~-e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.+++-++.+.+--.++.+..+ +.|+|.|.+....++ -=||+.|-+- .|++.+.+ ++|+++-+||
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~----vk~V~~av-----~vPLIL~gsg 197 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKV----LEDVLQAV-----DVPIVIGGSG 197 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHH----HHHHHHhC-----CCCEEEeCCC
Confidence 45566666666644457777776 689999998865553 3577666543 23333333 6899999999
Q ss_pred Ccc-c---HhHHhc-C-CCcEE--Ec--C-CCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-C
Q 015201 298 NGG-F---LERMKG-T-GVDVI--GL--D-WTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-R 364 (411)
Q Consensus 298 ~~~-~---l~~~~e-~-g~d~l--~~--d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~ 364 (411)
+.. . ++.-.+ + |-..+ +. + +.-.+.++.+.||-.+.+++-. +.+..+...+++. ..| + .
T Consensus 198 ~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~-------Din~ak~Ln~kL~-~~Gv~~e 269 (389)
T TIGR00381 198 NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVVLSWTIM-------DINMQKTLNRYLL-KRGLMPR 269 (389)
T ss_pred CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeEEEEcCC-------cHHHHHHHHHHHH-HcCCCHH
Confidence 875 2 433333 3 42333 22 3 2235666777888644444322 2344555555555 544 3 5
Q ss_pred CeEEeCCCC-CCCCC--cHHHHHHHHHHHHh
Q 015201 365 GHILNLGHG-VLVGT--PEEAVAHFFEVGKS 392 (411)
Q Consensus 365 gfIls~gc~-i~~~t--p~Eni~a~~~a~~~ 392 (411)
..||-|++. +..+. ..+++.++..++-+
T Consensus 270 DIVlDP~t~alG~Gieya~s~~erIRraALk 300 (389)
T TIGR00381 270 DIVMDPTTCALGYGIEFSITNMERIRLSGLK 300 (389)
T ss_pred HEEEcCCCccccCCHHHHHHHHHHHHHHHhc
Confidence 899999863 33332 34566666666654
No 122
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=87.05 E-value=17 Score=35.92 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CC------C-CCCC---------HHHHHHHH--HHHHHHHHHHHHhhCCCCCEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SW------G-GQLP---------PHMWEQWS--EPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~------~-~~iS---------p~~f~ef~--~Py~k~i~~~i~~~~~g~~~~ 292 (411)
+..++.+++..++|||.|-+-- .. . .+.+ -++|+++. +..++++.++.++. |++ +
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~ 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK--GIE-F 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh--CCc-E
Confidence 3445566677889999875431 11 0 1111 13455543 45788999999988 554 2
Q ss_pred EEecCCcccHhHHhcCCCcEEEcCC--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCC-CeE
Q 015201 293 LYINGNGGFLERMKGTGVDVIGLDW--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSR-GHI 367 (411)
Q Consensus 293 ~H~CG~~~~l~~~~e~g~d~l~~d~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~-gfI 367 (411)
+=+.=+...++.+.++|++++-+.. .+++.-+++ +.|..+.+.-|. .|.+||++.+..+.+.+.+. .++
T Consensus 93 ~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm------atl~Ei~~Av~~i~~~G~~~~~i~ 166 (329)
T TIGR03569 93 LSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM------ATLEEIEAAVGVLRDAGTPDSNIT 166 (329)
T ss_pred EEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC------CCHHHHHHHHHHHHHcCCCcCcEE
Confidence 2222333368888899999986643 345444433 245444443222 58999999888876543222 466
Q ss_pred EeCCCCCCCCCcH--HHHHHHHHHHHhcC
Q 015201 368 LNLGHGVLVGTPE--EAVAHFFEVGKSMK 394 (411)
Q Consensus 368 ls~gc~i~~~tp~--Eni~a~~~a~~~yg 394 (411)
|-= |.-...+|+ -|+.++-..-+.|+
T Consensus 167 llh-C~s~YP~~~~~~nL~~I~~Lk~~f~ 194 (329)
T TIGR03569 167 LLH-CTTEYPAPFEDVNLNAMDTLKEAFD 194 (329)
T ss_pred EEE-ECCCCCCCcccCCHHHHHHHHHHhC
Confidence 622 332222333 46666665555565
No 123
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=87.02 E-value=24 Score=32.32 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=84.3
Q ss_pred HHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE-c
Q 015201 241 IIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG-L 315 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~-~ 315 (411)
++.++++|||+|-+.-.+ +..++++.=.+.+.|.++.+.+.. .++|+.+-+ -+...++.-.+.|++.++ .
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~----~~~plSIDT-~~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN----PDVPLSIDT-FNPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH----TTSEEEEEE-SSHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC----CCeEEEEEC-CCHHHHHHHHHcCcceEEec
Confidence 888999999999887543 247888876677788777777622 156655433 122245555556999985 3
Q ss_pred CC---CCCHHHHHHHhCCCeeEEccCC-cCccCCC-------HHHHHHHHHHHHHH---hC-C-CCeEEeCCCCCCCCCc
Q 015201 316 DW---TVDMADGRKRLGNDISVQGNVD-PACLFSP-------LPALTDEIQRVVKC---AG-S-RGHILNLGHGVLVGTP 379 (411)
Q Consensus 316 d~---~~di~~~~~~~g~~~~l~G~vd-~~~L~gt-------~eeV~~ev~~~i~~---~~-~-~gfIls~gc~i~~~tp 379 (411)
.. .-.+..+.++++-.+++|=.-. |..+..+ .+++.+..++.++. .| + ...|+-||-+. +..
T Consensus 100 ~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf--~~~ 177 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF--GKD 177 (210)
T ss_dssp TTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS--STT
T ss_pred ccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc--CCC
Confidence 22 3357777788887766664331 2222222 23344444433222 34 3 68999999766 444
Q ss_pred HHHHHHHHHHHHhc
Q 015201 380 EEAVAHFFEVGKSM 393 (411)
Q Consensus 380 ~Eni~a~~~a~~~y 393 (411)
.+.-..+++..+.+
T Consensus 178 ~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 178 PEQNLELLRNIEEL 191 (210)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444445544
No 124
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.92 E-value=11 Score=33.49 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CCCEEEEecCCc-----c----cHhH
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP--ETPIVLYINGNG-----G----FLER 304 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~--g~~~~~H~CG~~-----~----~l~~ 304 (411)
...+.++.+++.|++++.+.- ++++.+.+..+ .+|++.+..... . ..+.
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHH
Confidence 344556677779999986542 33333332222 367788776554 2 2366
Q ss_pred HhcCCCcEEEcCC----CCC--HH-------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 305 MKGTGVDVIGLDW----TVD--MA-------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 305 ~~e~g~d~l~~d~----~~d--i~-------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
..+.|+|.+.+.. ..+ .+ ++.+..+.++.++-...|... .+++++.+.++.+ ...+--++-.+++
T Consensus 74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~-~~~g~~~iK~~~~ 151 (201)
T cd00945 74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIA-AEAGADFIKTSTG 151 (201)
T ss_pred HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHH-HHhCCCEEEeCCC
Confidence 7788999986421 112 22 233332112333322223222 4677777665544 3332223434443
Q ss_pred CCCCCCCcHHHHHHHHHHHH
Q 015201 372 HGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~ 391 (411)
. .+.+...+.++.+.+...
T Consensus 152 ~-~~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 152 F-GGGGATVEDVKLMKEAVG 170 (201)
T ss_pred C-CCCCCCHHHHHHHHHhcc
Confidence 2 223446778887776553
No 125
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=86.84 E-value=3.5 Score=44.08 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..++++.+.++|+|.|++.|.. |++.|....+ ++..+++.. ++|+-+|++.+... + ..+ .+.|+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDta-G~l~P~~v~~--------lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMA-GLLTPTVTVE--------LYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGC 223 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcc-cCCCHHHHHH--------HHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCC
Confidence 555667778888999999886654 5688877554 445555544 57899999877652 3 333 46899
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
|.+.
T Consensus 224 d~iD 227 (596)
T PRK14042 224 NHID 227 (596)
T ss_pred CEEE
Confidence 9984
No 126
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=86.72 E-value=13 Score=34.60 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~ 314 (411)
+.+..+...|-.++.++..+- +.+.-.-|. ..++++++.. |..+..|. |-.. .++.+++.++|+.+
T Consensus 46 k~~~el~kkGy~g~llSGGm~srg~VPl~kf~--------d~lK~lke~~-~l~inaHv-GfvdE~~~eklk~~~vdvvs 115 (275)
T COG1856 46 KRCMELEKKGYEGCLLSGGMDSRGKVPLWKFK--------DELKALKERT-GLLINAHV-GFVDESDLEKLKEELVDVVS 115 (275)
T ss_pred HHHHHHHhcCceeEEEeCCcCCCCCccHHHHH--------HHHHHHHHhh-CeEEEEEe-eeccHHHHHHHHHhcCcEEE
Confidence 344456677888888876443 345544433 3456677765 56667777 5554 67999999999999
Q ss_pred cCCCCCHHHHHHHhC
Q 015201 315 LDWTVDMADGRKRLG 329 (411)
Q Consensus 315 ~d~~~di~~~~~~~g 329 (411)
+|.--|-..+++.|+
T Consensus 116 LDfvgDn~vIk~vy~ 130 (275)
T COG1856 116 LDFVGDNDVIKRVYK 130 (275)
T ss_pred EeecCChHHHHHHHc
Confidence 887656666666665
No 127
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=86.69 E-value=12 Score=33.46 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
...+.+++.++.|++.+++-+.. ++.+.+.+ ..+++.+.++++ +.++++|. ..+...+.|+|++|+
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~---~~~~~~~~----~a~~l~~~~~~~--~~~liin~-----~~~la~~~~~dGvHl 78 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD---LSDEELLE----LARRLAELCQKY--GVPLIIND-----RVDLALELGADGVHL 78 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS---S-HHHHHH----HHHHHHHHHHHT--TGCEEEES------HHHHHHCT-SEEEE
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC---CCccHHHH----HHHHHHHHhhcc--eEEEEecC-----CHHHHHhcCCCEEEe
Confidence 34566777889999999886653 34555544 456667777766 67888876 567777899999998
Q ss_pred CC-CCCHHHHHHHhCCCeeE
Q 015201 316 DW-TVDMADGRKRLGNDISV 334 (411)
Q Consensus 316 d~-~~di~~~~~~~g~~~~l 334 (411)
.. ..+..++++.++.+..+
T Consensus 79 ~~~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 79 GQSDLPPAEARKLLGPDKII 98 (180)
T ss_dssp BTTSSSHHHHHHHHTTTSEE
T ss_pred cccccchHHhhhhcccceEE
Confidence 54 46888888888765543
No 128
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.65 E-value=6.6 Score=34.90 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc-c--cHh----HH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG-G--FLE----RM 305 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~-~--~l~----~~ 305 (411)
++..++.++...++|+|++.+.-++....+.. .+....+++++.+.+ +. +.|+++... +.. . .+. ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~--~~~~~~~~~~i~~~~-~~--~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGD--WEEVLEEIAAVVEAA-DG--GLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCC--HHHHHHHHHHHHHHh-cC--CceEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566777888899999997644432211100 367788888888877 32 678766554 322 1 222 23
Q ss_pred hcCCCcEEEcCCC-----CCHHH---HHHHhCC--CeeEEccCC
Q 015201 306 KGTGVDVIGLDWT-----VDMAD---GRKRLGN--DISVQGNVD 339 (411)
Q Consensus 306 ~e~g~d~l~~d~~-----~di~~---~~~~~g~--~~~l~G~vd 339 (411)
.+.|++++-.... .|+.. +++.+++ ++...|+++
T Consensus 139 ~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 4679999854332 24444 4454442 355566665
No 129
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.57 E-value=26 Score=36.44 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEe-----cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---------
Q 015201 234 TQAIADYIIYQVESGAHCIQIF-----DSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------- 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~-----D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------- 299 (411)
++-.++.++++.++|++.|-+. |....|++++-|+. ++.+++..++.++..+.-|..
T Consensus 24 t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~---------l~~l~~~~~~~~l~~l~r~~N~~G~~~~~d 94 (467)
T PRK14041 24 TEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWER---------LKEIRKRLKNTKIQMLLRGQNLVGYRHYAD 94 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHH---------HHHHHHhCCCCEEEEEeccccccCcccccc
Confidence 4455667778888899988552 11123688885543 444444333555555444521
Q ss_pred ---c-cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 300 ---G-FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 300 ---~-~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
. +++...+.|+|.+.+ +...|+..++ +..|. .+.|+++-.. ..-|++.+.+.++++.+.+.. .
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~-- 169 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA--HVQGAISYTVSPVHTLEYYLEFARELVDMGVD-S-- 169 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-E--
Confidence 1 146667889999864 4443433322 33453 4556664332 134678888888877664322 3
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++.. +...-..|+.+..++.++++-
T Consensus 170 I~i~-Dt~G~l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 170 ICIK-DMAGLLTPKRAYELVKALKKK 194 (467)
T ss_pred EEEC-CccCCcCHHHHHHHHHHHHHh
Confidence 3332 233334577788888888763
No 130
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=86.55 E-value=20 Score=33.71 Aligned_cols=80 Identities=26% Similarity=0.255 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHH---------HHHHHHHHHHHHhhCCCCCEEEEecCC------
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWS---------EPYIREIVSLVRTKCPETPIVLYINGN------ 298 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~---------~Py~k~i~~~i~~~~~g~~~~~H~CG~------ 298 (411)
+...++++.+.++|+|.+-+.=+... .+.-..-++.. ....-++++.+++.. .+|+++-+=-+
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 45567788889999999987633332 22222222211 123334555565543 56744322222
Q ss_pred -cccHhHHhcCCCcEEEc
Q 015201 299 -GGFLERMKGTGVDVIGL 315 (411)
Q Consensus 299 -~~~l~~~~e~g~d~l~~ 315 (411)
..+++.+++.|++++.+
T Consensus 93 ~~~fi~~~~~aG~~giii 110 (242)
T cd04724 93 LERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 22578889999999876
No 131
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.54 E-value=4.6 Score=40.24 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++++++++.+.++|+|.|.+.|..|- ..|....++ ++.+++..+..++-+|.+.+... + ..+ .+.|+
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G~-a~P~~v~~l--------v~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa 267 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIGV-GTPGTVVPM--------LEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGI 267 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcCC-cCHHHHHHH--------HHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 44556677788899999988777664 778776554 33444433334688899888652 3 444 36799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 268 ~~vd~ 272 (347)
T PLN02746 268 STVDS 272 (347)
T ss_pred CEEEE
Confidence 98853
No 132
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.50 E-value=5 Score=38.39 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H-h--HHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L-E--RMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l-~--~~~e~g 309 (411)
+.+.++++.+.++|++.|.+.|+.|. +.|+...++ +..+++..+ ++|+-+|.+.+... + . .-.+.|
T Consensus 138 ~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG 208 (266)
T cd07944 138 EELLELLELVNEIKPDVFYIVDSFGS-MYPEDIKRI--------ISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELG 208 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHH--------HHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcC
Confidence 34445566777889999988887775 888876654 334444332 37899999988652 2 2 234689
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.++.
T Consensus 209 a~~vd~ 214 (266)
T cd07944 209 VEIIDA 214 (266)
T ss_pred CCEEEE
Confidence 988753
No 133
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=86.49 E-value=33 Score=33.36 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++..++..++++|+++.+++. -|+-.+++++...+.|+|++
T Consensus 60 ~~v~~~~v~~~~grvpviaG~g~~------------------------------------~t~eai~lak~a~~~Gad~i 103 (299)
T COG0329 60 KEVLEAVVEAVGGRVPVIAGVGSN------------------------------------STAEAIELAKHAEKLGADGI 103 (299)
T ss_pred HHHHHHHHHHHCCCCcEEEecCCC------------------------------------cHHHHHHHHHHHHhcCCCEE
Confidence 344566677778888888765432 12344577788889999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---c-cHhHHhcC--CCcEEEc-CCCCCHHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---G-FLERMKGT--GVDVIGL-DWTVDMADGR 325 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---~-~l~~~~e~--g~d~l~~-d~~~di~~~~ 325 (411)
.+.-+.-.-.+ .+-..-|++++++.. +.|+++...-.. . ..+.+..+ .-+++.+ |...|+..+.
T Consensus 104 l~v~PyY~k~~----~~gl~~hf~~ia~a~-----~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~ 174 (299)
T COG0329 104 LVVPPYYNKPS----QEGLYAHFKAIAEAV-----DLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLE 174 (299)
T ss_pred EEeCCCCcCCC----hHHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHH
Confidence 87666544344 467778889999888 368888887432 1 23444433 3466666 4555777766
Q ss_pred HH---hCCC-eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 326 KR---LGND-ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 326 ~~---~g~~-~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+. .+++ ..+ +.|..+.. ...+. +|..|+|-+++|-. |+-...|++++++
T Consensus 175 ~~~~~~~~~~f~v--------~~G~d~~~----~~~~~-~G~~G~is~~~N~~-----p~~~~~l~~~~~~ 227 (299)
T COG0329 175 EIIAALGDRDFIV--------LSGDDELA----LPALL-LGADGVISVTANVA-----PELAVELYRAAKA 227 (299)
T ss_pred HHHHhcCccCeeE--------EeCchHHH----HHHHh-CCCCeEEecccccC-----HHHHHHHHHHHHc
Confidence 54 5542 222 22433322 22233 45567877766544 3445555555543
No 134
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.49 E-value=16 Score=36.71 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------HH---HHHHHHHHHHHHHHHhhC-CCCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------WE---QWSEPYIREIVSLVRTKC-PETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f~---ef~~Py~k~i~~~i~~~~-~g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. |- |-=.-+..++++.+++.. ++.|+.+-+
T Consensus 139 I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 139 IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 444445555666777889999998876543 2666632 10 112445667777887764 356777655
Q ss_pred cC-----------Ccc-----cHhHHhcCCCcEEEcCCC-----------CCH-HHHHHHhCCCeeEEccCC
Q 015201 296 NG-----------NGG-----FLERMKGTGVDVIGLDWT-----------VDM-ADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 296 CG-----------~~~-----~l~~~~e~g~d~l~~d~~-----------~di-~~~~~~~g~~~~l~G~vd 339 (411)
.+ ... ++..+.+.|+|.+++... .++ ..+|+..+..+...|++.
T Consensus 219 s~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~ 290 (361)
T cd04747 219 SQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVG 290 (361)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcc
Confidence 43 110 123456789999977321 122 346777776788889884
No 135
>TIGR03586 PseI pseudaminic acid synthase.
Probab=86.40 E-value=35 Score=33.74 Aligned_cols=149 Identities=11% Similarity=0.153 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CC----C------------CCCCHHHHHHH--HHHHHHHHHHHHHhhCCCCCEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SW----G------------GQLPPHMWEQW--SEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~----~------------~~iSp~~f~ef--~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
+...+.++...++|||.|-+-- .. . +.-..++|+++ ...+++++.++.++. |++++
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~~~ 94 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKEL--GLTIF 94 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHh--CCcEE
Confidence 3445566677788999864321 11 0 00123455554 345566899999987 56532
Q ss_pred EEecCCcccHhHHhcCCCcEEEcCC--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 293 LYINGNGGFLERMKGTGVDVIGLDW--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 293 ~H~CG~~~~l~~~~e~g~d~l~~d~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
=..=+...++.+.++|++.+-+.. .+++.-+++ +.|..+.+.-|. .|.+||...+..+.+. |...++|
T Consensus 95 -stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------~t~~Ei~~Av~~i~~~-g~~~i~L 166 (327)
T TIGR03586 95 -SSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------ATLEEIQEAVEACREA-GCKDLVL 166 (327)
T ss_pred -EccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC------CCHHHHHHHHHHHHHC-CCCcEEE
Confidence 222222357888899999997643 234443333 234333332221 5899998888877643 3445666
Q ss_pred eCCCCCCCCCcHH--HHHHHHHHHHhcC
Q 015201 369 NLGHGVLVGTPEE--AVAHFFEVGKSMK 394 (411)
Q Consensus 369 s~gc~i~~~tp~E--ni~a~~~a~~~yg 394 (411)
.= |.-...+|++ |+.+|-..-+.|+
T Consensus 167 lh-C~s~YP~~~~~~nL~~i~~lk~~f~ 193 (327)
T TIGR03586 167 LK-CTSSYPAPLEDANLRTIPDLAERFN 193 (327)
T ss_pred Ee-cCCCCCCCcccCCHHHHHHHHHHhC
Confidence 43 4333334554 5666655555565
No 136
>PLN02363 phosphoribosylanthranilate isomerase
Probab=86.38 E-value=26 Score=33.33 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC--CcHHHHHHHHHHHHhcC
Q 015201 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVG--TPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~--tp~Eni~a~~~a~~~yg 394 (411)
+||-| +++++..++-|.=+++|=...+| -+++.|++|++.+++..
T Consensus 209 ~peNV----~~ai~~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~~~ 255 (256)
T PLN02363 209 TPENV----HEAVSLLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKSVA 255 (256)
T ss_pred CHHHH----HHHHHhcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHhhc
Confidence 55544 44455666667778888887777 48899999999988653
No 137
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.30 E-value=3.8 Score=43.84 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g 309 (411)
.++..+.++.+.++|+|.|++.|..|. +.|....+ +++.+++.. ++|+-+|++.+... + ..+ .+.|
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~--------lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGL-LKPYAAYE--------LVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC-cCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcC
Confidence 355666777788899999988776665 77876544 344555543 57899999887652 3 333 3679
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 224 a~~vD 228 (593)
T PRK14040 224 IDGVD 228 (593)
T ss_pred CCEEE
Confidence 99985
No 138
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.17 E-value=28 Score=33.22 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---c----cHhHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---G----FLERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---~----~l~~~~e~g 309 (411)
.++.++...++|+|++.+.-+.-.-.|+ +-+.-|++++.+.. ++|++++..... . .+..+.+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~~~~~~~~ia~~~-----~~pi~iYn~P~~tg~~l~~~~~~~L~~~- 150 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQ----EGIVAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAEH- 150 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHhcC-
Confidence 4566667788899999876654433454 44566777777763 578888876532 1 23444443
Q ss_pred CcEEEc-CCCCCHHH---HHHHhCCCeeEEccCCcC
Q 015201 310 VDVIGL-DWTVDMAD---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 310 ~d~l~~-d~~~di~~---~~~~~g~~~~l~G~vd~~ 341 (411)
-++..+ +...|+.. +.+..++++.++.|-|..
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 186 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDL 186 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchHH
Confidence 244444 33335544 445455566666555653
No 139
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=86.05 E-value=7.5 Score=36.68 Aligned_cols=143 Identities=9% Similarity=0.116 Sum_probs=69.2
Q ss_pred HHHHHHhCCCEEEEe--cC--C-------CCCCCH---------HHHHHHHH--HHHHHHHHHHHhhCCCCCEEEEecCC
Q 015201 241 IIYQVESGAHCIQIF--DS--W-------GGQLPP---------HMWEQWSE--PYIREIVSLVRTKCPETPIVLYINGN 298 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~--D~--~-------~~~iSp---------~~f~ef~~--Py~k~i~~~i~~~~~g~~~~~H~CG~ 298 (411)
++...++|||.|-+- +. . ..+.++ ++|+++.+ ..+++|.+.+++. |+ .+.+.-.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--gi--~f~stpf 77 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKEL--GI--DFFSTPF 77 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHT--T---EEEEEE-
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHc--CC--EEEECCC
Confidence 567788999997543 21 0 012222 45665544 4577999999998 54 2323222
Q ss_pred -cccHhHHhcCCCcEEEcC--CCCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE-eCCC
Q 015201 299 -GGFLERMKGTGVDVIGLD--WTVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL-NLGH 372 (411)
Q Consensus 299 -~~~l~~~~e~g~d~l~~d--~~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl-s~gc 372 (411)
..-++.+.++|++.+=+. ..+++.-+++. .|..+.+.-| ..|.+||++.++-+-+. +...++| -.--
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG------~stl~EI~~Av~~~~~~-~~~~l~llHC~s 150 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG------MSTLEEIERAVEVLREA-GNEDLVLLHCVS 150 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T------T--HHHHHHHHHHHHHH-CT--EEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC------CCCHHHHHHHHHHHHhc-CCCCEEEEecCC
Confidence 235788888899998542 23455444433 4443333221 25789998877666444 4434444 3222
Q ss_pred CCCCCCcHHHHHHHHHHHHhcC
Q 015201 373 GVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~yg 394 (411)
..|..-..-|++.|-..-+.|+
T Consensus 151 ~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 151 SYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp SSS--GGG--TTHHHHHHHHST
T ss_pred CCCCChHHcChHHHHHHHHhcC
Confidence 3342222346666666666676
No 140
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.53 E-value=13 Score=43.12 Aligned_cols=71 Identities=27% Similarity=0.399 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..++++.+.++|+|.|.+.|. +|++.|....+ ++..+++.. ++|+-+|++.+... + ..+ .+.|+
T Consensus 691 ~~~~~~a~~l~~~Ga~~i~ikDt-~G~l~P~~~~~--------lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGa 760 (1146)
T PRK12999 691 DYYVDLAKELEKAGAHILAIKDM-AGLLKPAAAYE--------LVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGV 760 (1146)
T ss_pred HHHHHHHHHHHHcCCCEEEECCc-cCCCCHHHHHH--------HHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCC
Confidence 55567778888899999877665 45688876544 455666654 67899999877652 3 333 36899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
|.++.
T Consensus 761 d~vD~ 765 (1146)
T PRK12999 761 DIVDV 765 (1146)
T ss_pred CEEEe
Confidence 99854
No 141
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.52 E-value=15 Score=35.13 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHHH----HHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWSE----PYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~~----Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++++.+.|||.+-++ ||.+. .|-...-+-+-. ...-++++.+++. ..+|+++-..-|.
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 445566778899999998755 56553 333332222111 1222344455543 3678777777663
Q ss_pred -c-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCCCCeEEeCC-CCC
Q 015201 300 -G-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGSRGHILNLG-HGV 374 (411)
Q Consensus 300 -~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~~gfIls~g-c~i 374 (411)
. +++.+++.|+|++.+..- .+.+..+.+. .+---|+++..| . .|+++ ..+++.+.. .|||.-.+ -++
T Consensus 108 ~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~--~~~~~gi~~I~lv~PtT~~e---ri~~i~~~a--~gFIY~vS~~Gv 179 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDL-PYEESDYLIS--VCNLYNIELILLIAPTSSKS---RIQKIARAA--PGCIYLVSTTGV 179 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCC-CHHHHHHHHH--HHHHcCCCEEEEECCCCCHH---HHHHHHHhC--CCcEEEEcCCCC
Confidence 1 467788899999875321 2233322211 111123455443 2 55543 333444433 36766522 222
Q ss_pred CC--CCcHHHHHHHHHHHHhcCCCCC
Q 015201 375 LV--GTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 375 ~~--~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
.. ..-+++++.+++.+|++...++
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~t~~Pi 205 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKMTNKPI 205 (263)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCCE
Confidence 21 2335789999999998755444
No 142
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=85.40 E-value=24 Score=37.83 Aligned_cols=142 Identities=19% Similarity=0.344 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-----c-
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-----G- 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-----~- 299 (411)
++-.+..++.+.++|.+.|-+ |++ +++++-|+. ++ .+++..++.++..+.-|. .
T Consensus 25 t~d~l~ia~~l~~~G~~~iE~---~ggatfd~~~rfl~edp~e~-----l~----~l~~~~~~~~l~~l~Rg~N~~gy~~ 92 (592)
T PRK09282 25 TEDMLPIAEKLDKVGFWSLEV---WGGATFDVCIRYLNEDPWER-----LR----KLKKALPNTPLQMLLRGQNLVGYRH 92 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEe---cCCccchhhcccCCccHHHH-----HH----HHHHhCCCCEEEEEecccccccccc
Confidence 344556777888889888755 432 678877664 33 333333355665554441 1
Q ss_pred -----c--cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCC
Q 015201 300 -----G--FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 300 -----~--~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~ 364 (411)
. +++...+.|+|++.+ +...|+..++ +..|. .+.+++.-.. -.-|++.+.+.++++.+. |..
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad 169 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA--HVQGTISYTTSPVHTIEKYVELAKELEEM-GCD 169 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCC
Confidence 1 256667789999964 4444433322 33453 3456553321 135788888888888664 322
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+.| |+......|+.+..+++++++-
T Consensus 170 ~I~i---~Dt~G~~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 170 SICI---KDMAGLLTPYAAYELVKALKEE 195 (592)
T ss_pred EEEE---CCcCCCcCHHHHHHHHHHHHHh
Confidence 3333 4445556788899999888764
No 143
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=85.20 E-value=5.9 Score=37.61 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~ 310 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++..+ +++-+|.+-+... + . .-.+.|+
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~ 208 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGI-LDPFTTYEL--------IRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGA 208 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCC
Confidence 34445556667789999988887775 778776553 444544443 6889999987652 2 2 2336799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.+..
T Consensus 209 ~~vd~ 213 (259)
T cd07939 209 THVSV 213 (259)
T ss_pred CEEEE
Confidence 98743
No 144
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=84.96 E-value=6.2 Score=37.94 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~d 311 (411)
++.+.++...++|+|.|.+.|+.|. +.|+...+ +++.++++. ++++-+|.+-+... + . .-.+.|++
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~--------lv~~l~~~~-~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGL-LTPYAAYE--------LVKALKKEV-GLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCC-CCHHHHHH--------HHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 3445555677889999988877765 77876544 345555544 36889999887652 2 2 23367999
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
.++.
T Consensus 220 ~vd~ 223 (275)
T cd07937 220 IVDT 223 (275)
T ss_pred EEEE
Confidence 8853
No 145
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=84.88 E-value=29 Score=31.11 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
.+.++..++.|++.+++-+.. .+... .....+++.+.++++ +.++++|. .++...+.|.+++++..
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~---~~~~~----~~~~~~~l~~~~~~~--~~~l~i~~-----~~~la~~~g~~GvHl~~ 81 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKG---SNTRE----RLALAEKLQELCRRY--GVPFIVND-----RVDLALALGADGVHLGQ 81 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCC---CCHHH----HHHHHHHHHHHHHHh--CCeEEEEC-----HHHHHHHcCCCEEecCc
Confidence 355667888999998775432 23333 344556666677665 57788865 46667788999988743
Q ss_pred -CCCHHHHHHHhC
Q 015201 318 -TVDMADGRKRLG 329 (411)
Q Consensus 318 -~~di~~~~~~~g 329 (411)
..+...+++.++
T Consensus 82 ~~~~~~~~r~~~~ 94 (196)
T TIGR00693 82 DDLPASEARALLG 94 (196)
T ss_pred ccCCHHHHHHhcC
Confidence 345555555443
No 146
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.86 E-value=37 Score=32.39 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-------c-HhHH------
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-------F-LERM------ 305 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-------~-l~~~------ 305 (411)
..+..+..|+|++.+.=-+++--+.+|.+++ -++.+..+++ |.|++.+.=..-. . -+.+
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~-----~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRl 174 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENI-----SQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARL 174 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHH-----HHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHH
Confidence 3455668899999887778876667776664 5788889988 7898876543211 1 1222
Q ss_pred -hcCCCcEEEcCCCC---CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-CCCcH
Q 015201 306 -KGTGVDVIGLDWTV---DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL-VGTPE 380 (411)
Q Consensus 306 -~e~g~d~l~~d~~~---di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-~~tp~ 380 (411)
.++|.|++-..+.- ...++-+-.+-.+.+.||=.. ++++++.+.++..|+.++. | +..|-++- .+-|.
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~----~~~~~~l~~~~~ai~aGa~-G--~~~GRNifQ~~~p~ 247 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKT----ETEREFLEMVTAAIEAGAM-G--VAVGRNIFQHEDPE 247 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCC----CChHHHHHHHHHHHHccCc-c--hhhhhhhhccCChH
Confidence 37899999766544 345555555655666665433 5888999999999998543 3 33455553 33443
Q ss_pred HHHHHHHHHHH
Q 015201 381 EAVAHFFEVGK 391 (411)
Q Consensus 381 Eni~a~~~a~~ 391 (411)
.=++|+...++
T Consensus 248 ~m~~Ai~~Ivh 258 (265)
T COG1830 248 AMVKAIQAIVH 258 (265)
T ss_pred HHHHHHHHHhc
Confidence 33344444333
No 147
>PLN02389 biotin synthase
Probab=84.70 E-value=37 Score=34.26 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=76.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
++.++...+.|+..+++...+.+...++. .++++.++++.+++. +.. +.-+.|... .+..+++.|+|.++.
T Consensus 122 l~~a~~~~~~G~~~~~ivts~rg~~~e~~----~~e~i~eiir~ik~~--~l~-i~~s~G~l~~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 122 LEAAKRAKEAGSTRFCMGAAWRDTVGRKT----NFNQILEYVKEIRGM--GME-VCCTLGMLEKEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCCChh----HHHHHHHHHHHHhcC--CcE-EEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 33455556779999888766655455433 247778888888865 332 223346554 478899999999876
Q ss_pred CCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 316 DWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS--RGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 316 d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~--~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.-.. ..+.|.. ++ + ..+.++..+.++.+.+.+-. .|+|++.| . ..|.+..++...+++
T Consensus 195 ~LeT----s~~~y~~-i~------~---~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlg-----E-t~edrv~~l~~Lr~L 254 (379)
T PLN02389 195 NLDT----SREYYPN-VI------T---TRSYDDRLETLEAVREAGISVCSGGIIGLG-----E-AEEDRVGLLHTLATL 254 (379)
T ss_pred eecC----ChHHhCC-cC------C---CCCHHHHHHHHHHHHHcCCeEeEEEEECCC-----C-CHHHHHHHHHHHHhc
Confidence 3222 1233432 22 1 13677777776666665433 46777543 2 345555566677776
Q ss_pred C
Q 015201 394 K 394 (411)
Q Consensus 394 g 394 (411)
.
T Consensus 255 ~ 255 (379)
T PLN02389 255 P 255 (379)
T ss_pred c
Confidence 3
No 148
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=84.57 E-value=41 Score=32.66 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHH--HHHHHHHHHHHHHHHHhhCC--C--CCEEEE-ecCCcc-------
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMW--EQWSEPYIREIVSLVRTKCP--E--TPIVLY-INGNGG------- 300 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f--~ef~~Py~k~i~~~i~~~~~--g--~~~~~H-~CG~~~------- 300 (411)
.+.+.-++++|+|||.|.. +.++ +.++-+.| +.-++.-.++-++..++... + .|.++- +=|-+.
T Consensus 54 ~I~~IH~aY~eAGADiIeT-NTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~ 132 (311)
T COG0646 54 VIEAIHRAYIEAGADIIET-NTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISP 132 (311)
T ss_pred HHHHHHHHHHhccCcEEEe-cCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCC
Confidence 3445567899999998843 4444 45665554 34555555544433332210 1 233222 222211
Q ss_pred ---------------cHhHHhcCCCcEEEcCCCCCHHHHHHHh----------CCC--eeEEccCCcCc--cCC-CHHHH
Q 015201 301 ---------------FLERMKGTGVDVIGLDWTVDMADGRKRL----------GND--ISVQGNVDPAC--LFS-PLPAL 350 (411)
Q Consensus 301 ---------------~l~~~~e~g~d~l~~d~~~di~~~~~~~----------g~~--~~l~G~vd~~~--L~g-t~eeV 350 (411)
-++-+++-|+|++-++...|+.++|..+ |.+ +.+.|-++..- |.| ++++.
T Consensus 133 ~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~ 212 (311)
T COG0646 133 DFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAF 212 (311)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHH
Confidence 0223456799999888777776654332 333 45567777752 444 45544
Q ss_pred HHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCCCCC
Q 015201 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSS 399 (411)
Q Consensus 351 ~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~ 399 (411)
-.. ++.. +-++++..|.+.| +.++..++...++....++
T Consensus 213 ~~~----l~~~--~~~~vGlNCa~Gp----~~m~~~l~~ls~~~~~~vs 251 (311)
T COG0646 213 LNS----LEHL--GPDAVGLNCALGP----DEMRPHLRELSRIADAFVS 251 (311)
T ss_pred HHH----hhcc--CCcEEeeccccCH----HHHHHHHHHHHhccCceEE
Confidence 332 3333 4788999999885 4555555555554433333
No 149
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.37 E-value=28 Score=33.04 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHH----HHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWS----EPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~----~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++++.++|+|.|-++ ||.+. .|-...-+-+- ....-++++.+++...++|+++-.--|.
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G 103 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKG 103 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhh
Confidence 445567778889999998755 55553 33332222111 1223344555654322678663333443
Q ss_pred -c-cHhHHhcCCCcEEEc
Q 015201 300 -G-FLERMKGTGVDVIGL 315 (411)
Q Consensus 300 -~-~l~~~~e~g~d~l~~ 315 (411)
. +++.+++.|++++-+
T Consensus 104 ~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 2 567888999999865
No 150
>PLN02591 tryptophan synthase
Probab=83.90 E-value=24 Score=33.47 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHH----HHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWS----EPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~----~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++.+.++|+|.+-++ ||.+. .|-...-+-+- ..-.-++++.+++. ..+|+++-..-|.
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhH
Confidence 455677888999999998755 56553 33322222111 01122333444433 2678777777663
Q ss_pred --ccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHhCCCCeEEeCC-CCC
Q 015201 300 --GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCAGSRGHILNLG-HGV 374 (411)
Q Consensus 300 --~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~~~~gfIls~g-c~i 374 (411)
.+++..++.|+|++-+-. ..+++..+... .+--=|+++..|. .|+++ .++++.+.. .|||--.+ .++
T Consensus 95 ~~~F~~~~~~aGv~GviipD-LP~ee~~~~~~--~~~~~gl~~I~lv~Ptt~~~---ri~~ia~~~--~gFIY~Vs~~Gv 166 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPD-LPLEETEALRA--EAAKNGIELVLLTTPTTPTE---RMKAIAEAS--EGFVYLVSSTGV 166 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCC-CCHHHHHHHHH--HHHHcCCeEEEEeCCCCCHH---HHHHHHHhC--CCcEEEeeCCCC
Confidence 246778889999986522 23333322211 1111234444332 34332 222333322 35555322 233
Q ss_pred CC--CCcHHHHHHHHHHHHhcCCCC
Q 015201 375 LV--GTPEEAVAHFFEVGKSMKYDN 397 (411)
Q Consensus 375 ~~--~tp~Eni~a~~~a~~~yg~~~ 397 (411)
.. ..-++++..+++.+|++..-+
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~~~~P 191 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEVTDKP 191 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhcCCCc
Confidence 21 122567888888888864433
No 151
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=83.86 E-value=17 Score=35.72 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 245 VESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+.|+..|.+.. | .++.++ +.++++.+++..+...+.+.+.|... .++.+.+.|++.+++
T Consensus 62 ~~~gi~~I~~tG--GEPll~~~---------l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~I 124 (331)
T PRK00164 62 VALGVRKVRLTG--GEPLLRKD---------LEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNV 124 (331)
T ss_pred HHCCCCEEEEEC--CCCcCccC---------HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEE
Confidence 345888887743 2 255543 34556666665323456677777642 467788899987643
No 152
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=83.62 E-value=34 Score=30.94 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=61.1
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d~ 317 (411)
++.+.++|+|.|.+.--. ++ ...+++++.++++ |.++++=.++..+ .+....+.|+|.+.+..
T Consensus 69 ~~~~~~~Gad~i~vh~~~----~~--------~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA----DD--------ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHcCCCEEEEeccC----CH--------HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 667789999998654221 11 2456788889887 6777654344332 34556778999987643
Q ss_pred C--------CC---HHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 318 T--------VD---MADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 318 ~--------~d---i~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
. .. +.++++.++. .+.+.||+++ +. ++++++. |-.++++++.
T Consensus 135 g~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~-------~n----~~~~~~~-Ga~~v~vGsa 188 (206)
T TIGR03128 135 GLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINL-------DT----IPDVIKL-GPDIVIVGGA 188 (206)
T ss_pred CcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCH-------HH----HHHHHHc-CCCEEEEeeh
Confidence 2 12 3555555543 3444688843 22 3344543 3346666554
No 153
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=83.57 E-value=23 Score=34.18 Aligned_cols=74 Identities=8% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPE-TPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g-~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
+...+++..+.+.+.|....... .+++. | +.+.++.+.+.+.. . +|+.+|.|-... .+....+.|++.
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~~~~~--~-~~~~~~~~~~a~~~-----~~vpv~lhlDH~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIKYMGG--Y-KMAVAMVKTLIERM-----SIVPVALHLDHGSSYESCIKAIKAGFSS 100 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhccCc--H-HHHHHHHHHHHHHC-----CCCeEEEECCCCCCHHHHHHHHHcCCCE
Confidence 33445566677888875432211 12221 1 22345555554443 4 799999874332 567777889999
Q ss_pred EEcCCC
Q 015201 313 IGLDWT 318 (411)
Q Consensus 313 l~~d~~ 318 (411)
+.+|..
T Consensus 101 Vmid~s 106 (282)
T TIGR01859 101 VMIDGS 106 (282)
T ss_pred EEECCC
Confidence 988753
No 154
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=83.48 E-value=36 Score=36.43 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec-----CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------
Q 015201 233 LTQAIADYIIYQVESGAHCIQIFD-----SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-------- 299 (411)
Q Consensus 233 ~~d~~~~~~~~~~e~G~d~i~i~D-----~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-------- 299 (411)
-++-.+++++.+.++|.+.|-+.. ..-.+++++-|+. ++.+++..++.++..+.-|..
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~---------l~~l~~~~~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWER---------LRELKKALPNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHH---------HHHHHHhCCCCEEEEEEccccccccccCc
Confidence 345566778888899999875531 1124788885543 344444334666766655521
Q ss_pred ----c-cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 300 ----G-FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 300 ----~-~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
. +++...+.|+|.+.+ +...|...++ +..|. .+.+++.-.. -.-|++.+.+.++++.+.+. ..+
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Ga-d~I 166 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA--HAQGTISYTTSPVHTLETYLDLAEELLEMGV-DSI 166 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 1 246667889999864 4443433322 33453 3444443221 13578888888888776532 233
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+ |+......|+.+..++.++++.
T Consensus 167 ~i---~Dt~G~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 167 CI---KDMAGILTPKAAYELVSALKKR 190 (582)
T ss_pred EE---CCCCCCcCHHHHHHHHHHHHHh
Confidence 33 3444455677788888888764
No 155
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=83.33 E-value=8.5 Score=37.28 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
+-.++.++++.++|||++++. +..-++++.+++ ++.++...|.+|+++.. +... .++.+.++|++.
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~--------~~~~~~~~p~~pl~~~~-~~~~~~~~~eL~~lG~~~ 236 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIH---SRKKDPDEILEF--------ARRFRNHYPRTPLVIVP-TSYYTTPTDEFRDAGISV 236 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHH--------HHHhhhhCCCCCEEEec-CCCCCCCHHHHHHcCCCE
Confidence 445667889999999999874 234667665553 44444433456765433 4322 478999999999
Q ss_pred EEcC
Q 015201 313 IGLD 316 (411)
Q Consensus 313 l~~d 316 (411)
+++.
T Consensus 237 v~~~ 240 (285)
T TIGR02320 237 VIYA 240 (285)
T ss_pred EEEh
Confidence 8774
No 156
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=82.98 E-value=56 Score=34.29 Aligned_cols=139 Identities=17% Similarity=0.328 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc------
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG------ 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~------ 299 (411)
++-.+..++++-++|.+.|-+ ||| +++.+-|++ ++.+++..++.++....-|..
T Consensus 26 t~d~l~ia~~ld~~G~~siE~---~GGatfd~~~rfl~Edpwer---------lr~lr~~~~nt~lqmL~Rg~N~vGy~~ 93 (499)
T PRK12330 26 MEDMVGACEDIDNAGYWSVEC---WGGATFDACIRFLNEDPWER---------LRTFRKLMPNSRLQMLLRGQNLLGYRH 93 (499)
T ss_pred HHHHHHHHHHHHhcCCCEEEe---cCCcchhhhhcccCCCHHHH---------HHHHHHhCCCCeEEEEEcccccCCccC
Confidence 344455666777788887644 543 577777765 445554445667777776651
Q ss_pred -----c--cHhHHhcCCCcEEEc-CCCCCHHHH------HHHhCCCeeEEccC----CcCccCCCHHHHHHHHHHHHHHh
Q 015201 300 -----G--FLERMKGTGVDVIGL-DWTVDMADG------RKRLGNDISVQGNV----DPACLFSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 300 -----~--~l~~~~e~g~d~l~~-d~~~di~~~------~~~~g~~~~l~G~v----d~~~L~gt~eeV~~ev~~~i~~~ 361 (411)
. +++...+.|+|++.+ +...|+... .++.|.. ..|.| +| .-|+|.+.+.++++.+.+
T Consensus 94 y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~--~~~~i~yt~sp---~~t~e~~~~~a~~l~~~G 168 (499)
T PRK12330 94 YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKH--AQGTICYTVSP---IHTVEGFVEQAKRLLDMG 168 (499)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCe--EEEEEEEecCC---CCCHHHHHHHHHHHHHcC
Confidence 1 244556789999964 555554332 2334542 22322 33 248888888888887754
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 362 GSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 362 ~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
. -+++.... ..-..|+.+..++.+.++.
T Consensus 169 a---d~I~IkDt-aGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 169 A---DSICIKDM-AALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred C---CEEEeCCC-ccCCCHHHHHHHHHHHHHh
Confidence 2 23443333 2334567788888888764
No 157
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.89 E-value=33 Score=33.52 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------H---HHHHHHHHHHHHHHHHhhC-CCCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------W---EQWSEPYIREIVSLVRTKC-PETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f---~ef~~Py~k~i~~~i~~~~-~g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||.. | -+-=..+..++++.+++.. ++.++.+-.
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 444455555667788899999998764322 2666631 1 0111234456666666653 355676644
Q ss_pred cCC------c---c---cHhHHhcCCCcEEEcC
Q 015201 296 NGN------G---G---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 296 CG~------~---~---~l~~~~e~g~d~l~~d 316 (411)
... . . +++.+.+.|+|.+++.
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 422 1 1 2466778899999753
No 158
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=82.81 E-value=28 Score=33.63 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHhc-CCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMKG-TGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~e-~g~d~ 312 (411)
++.++...++|+|++.+.-+.-.-.|+ +=+.-|++.+.+.. ++|++++.+.... .+..+.+ .+ ++
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~----~~i~~~f~~v~~~~-----~~pi~lYn~~g~~l~~~~l~~L~~~~p-ni 153 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQ----EGLYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAERCP-NL 153 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEeCCCCCCCHHHHHHHHhcCC-CE
Confidence 456677788999999876665433454 44555778887754 4688776653322 2444554 43 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEccC
Q 015201 313 IGL-DWTVDMAD---GRKRLGNDISVQGNV 338 (411)
Q Consensus 313 l~~-d~~~di~~---~~~~~g~~~~l~G~v 338 (411)
..+ +...|+.. +.+..+++..++.|.
T Consensus 154 vgiKds~~d~~~~~~~~~~~~~~~~v~~G~ 183 (289)
T cd00951 154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeCC
Confidence 554 33445555 445556666666554
No 159
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.30 E-value=26 Score=33.40 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHH----HHHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQW----SEPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef----~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...++++.+.+.|||.|-++ ||.+. .|-....+-+ -..-.-++++.+++...++|+++-..-|.
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 445567778889999998765 55542 3322222211 11122233444553334678777776653
Q ss_pred --ccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCCCCeEEe--CCCC
Q 015201 300 --GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGSRGHILN--LGHG 373 (411)
Q Consensus 300 --~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~~gfIls--~gc~ 373 (411)
.+++..++.|+|++.+- ...+.+..+... .+--=|+++..| . .|+++ .++++.+. ..|||-- .-..
T Consensus 106 ~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~--~~~~~gl~~I~lvap~t~~e---ri~~i~~~--s~gfIY~vs~~Gv 177 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIP-DLPPEEAEELRA--AAKKHGLDLIFLVAPTTTDE---RLKKIASH--ASGFVYYVSRAGV 177 (258)
T ss_pred HHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHH--HHHHcCCcEEEEeCCCCCHH---HHHHHHHh--CCCcEEEEeCCCC
Confidence 24688889999998762 233444433221 011122444332 1 34432 22222222 2467743 2111
Q ss_pred CC-CCCcHHHHHHHHHHHHhcCCCC
Q 015201 374 VL-VGTPEEAVAHFFEVGKSMKYDN 397 (411)
Q Consensus 374 i~-~~tp~Eni~a~~~a~~~yg~~~ 397 (411)
.. ....++++..+++.+|++..-+
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~~~~p 202 (258)
T PRK13111 178 TGARSADAADLAELVARLKAHTDLP 202 (258)
T ss_pred CCcccCCCccHHHHHHHHHhcCCCc
Confidence 11 1123466888888888875433
No 160
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=82.15 E-value=22 Score=35.65 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------HH---HHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------WE---QWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f~---ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.+.+-..+.++...++|.|+|.+.-.-+ .|+||.. |= |-=.-+..++++.+++..|.-.+.+.+.
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 444555555567778899999999876544 3777741 10 1113445566666666543324555553
Q ss_pred CC----------c----c--cHhHHhcCCCcEEEcC
Q 015201 297 GN----------G----G--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 297 G~----------~----~--~l~~~~e~g~d~l~~d 316 (411)
+. . . ++..+.+.|+|.+++.
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 21 1 0 1244556799999874
No 161
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=82.11 E-value=6.8 Score=34.83 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=40.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
++..+++|+|+|.+ |. +||++ ++++++.+++..+. +.+-.+|.++ .++.+.++|+|++++.
T Consensus 93 ~~ea~~~g~d~I~l-D~----~~~~~--------~~~~v~~l~~~~~~--v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 93 AEEALEAGADIIML-DN----MSPED--------LKEAVEELRELNPR--VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHTT-SEEEE-ES-----CHHH--------HHHHHHHHHHHTTT--SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHhCCCEEEe-cC----cCHHH--------HHHHHHHHhhcCCc--EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 33455689999844 44 36755 45566666666433 5667788876 5999999999999874
No 162
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=81.89 E-value=31 Score=32.98 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCC--c-c-cHhHHhcCCCc-----EEEcCCCCCHHHHHHHh--CCCeeEEccCCc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGN--G-G-FLERMKGTGVD-----VIGLDWTVDMADGRKRL--GNDISVQGNVDP 340 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~--~-~-~l~~~~e~g~d-----~l~~d~~~di~~~~~~~--g~~~~l~G~vd~ 340 (411)
...+++.++..++. |.|+++|+... . . .++.+.+.|+. +.|.....|...+++.. |-.+.+-|.. .
T Consensus 135 ~~~f~~~~~lA~~~--~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~-~ 211 (293)
T cd00530 135 EKVLRAAARAQKET--GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIG-K 211 (293)
T ss_pred HHHHHHHHHHHHHH--CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCC-c
Confidence 35566777777776 79999998752 2 2 46888887764 23555334666666654 3222222211 1
Q ss_pred Cc-c-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 341 AC-L-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 341 ~~-L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
.. - .-+.++..+.++++++......++++++..-
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 212 DKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred ccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCc
Confidence 10 0 1123456667888888765578899998754
No 163
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=81.79 E-value=59 Score=33.26 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++. +.+++.++...++|
T Consensus 182 v~~~~~a~~~a~~eTG~~~~y~~NiT~~~-------------------------------------~em~~ra~~a~e~G 224 (412)
T cd08213 182 AKESLKARDKAEAETGERKAYLANITAPV-------------------------------------REMERRAELVADLG 224 (412)
T ss_pred HHHHHHHHHHHHHhhCCcceEEEEecCCH-------------------------------------HHHHHHHHHHHHhC
Confidence 67778888888888876554444444431 11223345567789
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c-c-H-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G-F-L-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~-~-l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+ |. +..+.+...+. +.|+..|-.+.- . . + ..+.=.|+|.+++
T Consensus 225 ~~~~mv~~~~~G~-~~----------l~~l~~~~~~~--~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~ 291 (412)
T cd08213 225 GKYVMIDVVVAGW-SA----------LQYLRDLAEDY--GLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVDQLHI 291 (412)
T ss_pred CCeEEeeccccCh-HH----------HHHHHHhcccc--CeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCCcccc
Confidence 9987443334442 22 22233333222 566666665431 1 1 2 3333469999875
Q ss_pred CC-----CCCHH---HHHHHhCCCe-----------eEEccCCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 316 DW-----TVDMA---DGRKRLGNDI-----------SVQGNVDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 316 d~-----~~di~---~~~~~~g~~~-----------~l~G~vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.. ..+-+ .+.+.+.... .-+|++.+.+. - | ++.. +.++++.+|. -+|+..|.
T Consensus 292 ~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~~----~p~~~~~~G~-Dvil~~GG 366 (412)
T cd08213 292 GTAVGKMEGDKEEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPVASGGLHPGL----VPDVIDILGK-DIVIQVGG 366 (412)
T ss_pred CCccCCcCCCHHHHHHHHHHHHhccccccchhccccCccccCCCceEecCCCCChhH----HHHHHHHhCC-ceEEecCC
Confidence 32 11222 2333332211 12567766652 2 1 4443 4566677774 58888888
Q ss_pred CC--CCCCcHHHHHHHHHHHHhcCCCCCCCCccccccc
Q 015201 373 GV--LVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESK 408 (411)
Q Consensus 373 ~i--~~~tp~Eni~a~~~a~~~yg~~~~~~~~~~~~~~ 408 (411)
++ -|+-+-+..+|+.+++...-.....++.|-+.|.
T Consensus 367 Gi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~e 404 (412)
T cd08213 367 GVHGHPDGTRAGAKAVRQAIEAALEGISLDEYAKDHKE 404 (412)
T ss_pred ceecCCCCchhHHHHHHHHHHHHHcCCCHHHHhhcCHH
Confidence 87 3567788899998887776443344444444443
No 164
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.76 E-value=47 Score=31.80 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+...++++.+.++|+..+.. ..+-..-||.-|+.+....++.+.+..++. |++++-=.. +...++.+.++ ++.+-
T Consensus 41 ~~~~~~A~~lk~~g~~~~r~-~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~-d~~~~~~l~~~-vd~~k 115 (266)
T PRK13398 41 EQMVKVAEKLKELGVHMLRG-GAFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVM-DTRDVEEVADY-ADMLQ 115 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEE-eeecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeC-ChhhHHHHHHh-CCEEE
Confidence 34556777788889887643 222244456677777788888888888887 677653222 22346777777 78876
Q ss_pred cCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 315 LDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 315 ~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
+.. ..+..-+++. .|..+.+-- -..+|.+|+...+..+.. .|+...+|
T Consensus 116 Iga~~~~n~~LL~~~a~~gkPV~lk~-----G~~~s~~e~~~A~e~i~~-~Gn~~i~L 167 (266)
T PRK13398 116 IGSRNMQNFELLKEVGKTKKPILLKR-----GMSATLEEWLYAAEYIMS-EGNENVVL 167 (266)
T ss_pred ECcccccCHHHHHHHhcCCCcEEEeC-----CCCCCHHHHHHHHHHHHh-cCCCeEEE
Confidence 643 2243333332 232221111 123589999998877654 34434444
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=81.60 E-value=9.6 Score=37.76 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-PETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-~g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++.. +++++-+|.+-+... + -.-.+.|
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 213 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAGA-MLPDDVRDR--------VRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG 213 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCC-CCHHHHHHH--------HHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC
Confidence 44556667778889999988777665 778776553 34444432 247899999988752 2 2244689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 214 a~~iD 218 (333)
T TIGR03217 214 ATRID 218 (333)
T ss_pred CCEEE
Confidence 99874
No 166
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=81.45 E-value=6.7 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--ccHhHHhcCCCcE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--GFLERMKGTGVDV 312 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--~~l~~~~e~g~d~ 312 (411)
+-.++.++++.++|||++++.-+. +++++++ +.+.+ +.|+++..-.+. ..++.+.++|++.
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~----~~~~~~~--------~~~~~-----~~Pl~~~~~~~~~~~~~~~l~~lG~~~ 222 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK----DPEEIRA--------FAEAP-----DVPLNVNMTPGGNLLTVAELAELGVRR 222 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC----CHHHHHH--------HHhcC-----CCCEEEEecCCCCCCCHHHHHHCCCeE
Confidence 446677889999999999774332 5544443 44443 468776654444 2579999999999
Q ss_pred EEcCC
Q 015201 313 IGLDW 317 (411)
Q Consensus 313 l~~d~ 317 (411)
+++..
T Consensus 223 v~~~~ 227 (243)
T cd00377 223 VSYGL 227 (243)
T ss_pred EEECh
Confidence 88754
No 167
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.27 E-value=50 Score=31.30 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhc
Q 015201 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKG 307 (411)
Q Consensus 229 ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e 307 (411)
+.+.-.+..++.++.+++.|||.|-++-..+ .++++. -++|+++.+.+.. +.|+.+-+ ... .++.-.+
T Consensus 20 ~~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~~e-------e~~r~v~~i~~~~-~~piSIDT--~~~~v~e~aL~ 88 (252)
T cd00740 20 IKAEDYDEALDVARQQVEGGAQILDLNVDYG-GLDGVS-------AMKWLLNLLATEP-TVPLMLDS--TNWEVIEAGLK 88 (252)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHH-------HHHHHHHHHHHhc-CCcEEeeC--CcHHHHHHHHh
Confidence 3444456777888899999999997765332 455533 2344444444433 56754433 222 4555555
Q ss_pred C--CCcEEE-cCCCC------CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHH----hC-C-CCeEEeCCC
Q 015201 308 T--GVDVIG-LDWTV------DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKC----AG-S-RGHILNLGH 372 (411)
Q Consensus 308 ~--g~d~l~-~d~~~------di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~----~~-~-~gfIls~gc 372 (411)
. |.+.++ +.... .+.++.+++|-.++++-. ++.-.-.|.++..+.++++++. .+ + ..+|+-||-
T Consensus 89 ~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~-~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgi 167 (252)
T cd00740 89 CCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF-DEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLI 167 (252)
T ss_pred hCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCc
Confidence 4 999885 43221 133445668866766642 2221223444444444444443 23 2 489999998
Q ss_pred CCCC
Q 015201 373 GVLV 376 (411)
Q Consensus 373 ~i~~ 376 (411)
+...
T Consensus 168 g~~~ 171 (252)
T cd00740 168 LPIA 171 (252)
T ss_pred cccc
Confidence 8543
No 168
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=81.27 E-value=28 Score=33.79 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-ccHhHHhcCCCcEEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-GFLERMKGTGVDVIG 314 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~~l~~~~e~g~d~l~ 314 (411)
+...+++..+.+.++|.-..+.. .++++ -+++.++.+.+.+... ..+|+.+|.+-.. ..+....+.|++.+.
T Consensus 31 ~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~---~~vPV~lHLDH~~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 31 TQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMG---ITVPVAIHLDHGHYEDALECIEVGYTSIM 104 (293)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcC---CCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 33455566777888875322221 23332 1334555555555531 1469999997442 356777889999998
Q ss_pred cCC
Q 015201 315 LDW 317 (411)
Q Consensus 315 ~d~ 317 (411)
+|.
T Consensus 105 ~d~ 107 (293)
T PRK07315 105 FDG 107 (293)
T ss_pred EcC
Confidence 874
No 169
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=81.14 E-value=39 Score=30.59 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=64.5
Q ss_pred HHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCccc-HhHHhcCCCcEEEcCCC---
Q 015201 245 VESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGGF-LERMKGTGVDVIGLDWT--- 318 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~~-l~~~~e~g~d~l~~d~~--- 318 (411)
.+.|+|+|+++.+- +++.. +.+++.. +.+++ +|.-..... +..-...++|.+-+|..
T Consensus 70 ~~~~~d~Vqlhg~e----~~~~~------------~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~ 132 (203)
T cd00405 70 EELGLDVVQLHGDE----SPEYC------------AQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGG 132 (203)
T ss_pred HhcCCCEEEECCCC----CHHHH------------HHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCC
Confidence 45799999987532 34332 2233221 23344 444333221 11122357777755431
Q ss_pred --------CCHHHHHHHh-CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHH
Q 015201 319 --------VDMADGRKRL-GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFE 388 (411)
Q Consensus 319 --------~di~~~~~~~-g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~ 388 (411)
.|+..+++.. .-.+.+.||++| +.+.++++...+.|+.+++|=...|+ -+++.++++++
T Consensus 133 ~~Gg~g~~~~~~~l~~~~~~~PvilaGGI~~-----------~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~ 201 (203)
T cd00405 133 GGGGTGKTFDWSLLRGLASRKPVILAGGLTP-----------DNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIE 201 (203)
T ss_pred CCCCCcceEChHHhhccccCCCEEEECCCCh-----------HHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHH
Confidence 3444454432 334677777766 33455555554568888888655555 68899999987
Q ss_pred H
Q 015201 389 V 389 (411)
Q Consensus 389 a 389 (411)
+
T Consensus 202 ~ 202 (203)
T cd00405 202 A 202 (203)
T ss_pred h
Confidence 5
No 170
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.91 E-value=34 Score=34.11 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH---HH------HHHHHHHHHHHHHHHhhCC-----CCCEE
Q 015201 231 SHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM---WE------QWSEPYIREIVSLVRTKCP-----ETPIV 292 (411)
Q Consensus 231 ~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~---f~------ef~~Py~k~i~~~i~~~~~-----g~~~~ 292 (411)
+.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =. |-=.-+..++++.+++..| +.++.
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 33444444556677789999998865433 2566522 11 1223455677777777643 55666
Q ss_pred EEecCC-------c--c---cHhHHhcCCCcEEEcC
Q 015201 293 LYINGN-------G--G---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 293 ~H~CG~-------~--~---~l~~~~e~g~d~l~~d 316 (411)
+...+. . . ++..+.+.|+|.+++.
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 665542 1 1 2356667899999874
No 171
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=80.80 E-value=8 Score=37.45 Aligned_cols=120 Identities=17% Similarity=0.271 Sum_probs=74.8
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++.+. .|+|.+.++=... |.. .| ++-+..+++|-+.+ ++|+++|
T Consensus 152 ~~~T~peea~~Fv~~--------------TgvD~LAvaiGt~HG~Y~~~p----~Ldfd~l~~I~~~~-----~vPLVLH 208 (286)
T PRK12738 152 AFLTDPQEAKRFVEL--------------TGVDSLAVAIGTAHGLYSKTP----KIDFQRLAEIREVV-----DVPLVLH 208 (286)
T ss_pred hcCCCHHHHHHHHHH--------------hCCCEEEeccCcccCCCCCCC----cCCHHHHHHHHHHh-----CCCEEEe
Confidence 678999988776653 3888765543221 221 23 23344555554444 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-+-... .+....++|+.-+|+....- ...+++.+.+. -+.+||..+ ....+.+++.+++.|+.++.
T Consensus 209 GgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (286)
T PRK12738 209 GASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAEN---PQGNDPRYYMRVGMDAMKEVVRNKINVCGS 280 (286)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875544 47778889999999875332 12233434221 123677644 46678899999999998864
No 172
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=80.77 E-value=31 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKG 307 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e 307 (411)
+|++.+.++|||.|.+.- | .-+...|+++.+|+. |+..-+-.|-.+. .++++.+
T Consensus 75 ~~i~~fa~agad~It~H~-----------E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 75 RYIEAFAKAGADIITFHA-----------E--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHHHhCCCEEEEEe-----------c--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHh
Confidence 677888999999998742 2 456778899999998 5666666666654 4655554
No 173
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.74 E-value=39 Score=39.40 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=54.5
Q ss_pred hHHhcCCCcEEEcCCCCCHHHHHHHh----------CC--CeeEEccC-CcC--ccCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 303 ERMKGTGVDVIGLDWTVDMADGRKRL----------GN--DISVQGNV-DPA--CLFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 303 ~~~~e~g~d~l~~d~~~di~~~~~~~----------g~--~~~l~G~v-d~~--~L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
+.+.+.|+|.+-++...|+.+++..+ +. .+.+...+ |.. ++.|++- +.+...++. .+-..
T Consensus 171 ~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~---ea~~~~l~~--~~~~a 245 (1229)
T PRK09490 171 RGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTT---EAFWNSLRH--AKPLS 245 (1229)
T ss_pred HHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcH---HHHHHHHhc--CCCCE
Confidence 34567899999998888887765333 22 34445556 322 3456542 122222222 25667
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhcCCCCCCCCcccc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFE 405 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~~~~~~~ 405 (411)
++..|+.. |+.+...++...++...++.=.+|..
T Consensus 246 vGlNCs~G----P~~m~~~l~~l~~~~~~pi~vyPNAG 279 (1229)
T PRK09490 246 IGLNCALG----ADELRPYVEELSRIADTYVSAHPNAG 279 (1229)
T ss_pred EEEcCCCc----HHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 88889876 66777777777666544444334333
No 174
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=80.57 E-value=57 Score=32.15 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=91.6
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE-EecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC-EEEEe
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ-IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP-IVLYI 295 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~-i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~-~~~H~ 295 (411)
+.+-|||.+-+.+++++++- .+++- --|..|. -+.+|++-+++++++++ +++- +.+.+
T Consensus 138 dy~Vd~eyLl~w~~kVa~~K-----------gkglEaHlDGqGE--------P~lYP~l~~lVqalk~~-~~v~vVSmQT 197 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFK-----------GKGLEAHLDGQGE--------PLLYPHLVDLVQALKEH-KGVEVVSMQT 197 (414)
T ss_pred ceEecHHHHHHHHHHHHhhh-----------CCCeEEEecCCCC--------CccchhHHHHHHHHhcC-CCceEEEEee
Confidence 55678987777777766642 22221 2244443 24578999999999987 3543 34555
Q ss_pred cCCc-c--cHhHHhcCCCcEEEcC-CCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 296 NGNG-G--FLERMKGTGVDVIGLD-WTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 296 CG~~-~--~l~~~~e~g~d~l~~d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.|.. + .++.+.+.|.|-++++ +..|.+.+|...|-+ | -+.+.|.+-++-+++ .+=..+++|-
T Consensus 198 ng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~-------d-----Ydv~kvle~aE~i~~--a~idvlIaPv 263 (414)
T COG2100 198 NGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRK-------D-----YDVKKVLEVAEYIAN--AGIDVLIAPV 263 (414)
T ss_pred CceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCcc-------c-----cCHHHHHHHHHHHHh--CCCCEEEeee
Confidence 5653 2 4689999999999774 346888888755421 1 134445444443333 2235666663
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+-||.+.+.+.++++.|++.|.
T Consensus 264 --~lPG~ND~E~~~iIe~A~~iGa 285 (414)
T COG2100 264 --WLPGVNDDEMPKIIEWAREIGA 285 (414)
T ss_pred --ecCCcChHHHHHHHHHHHHhCC
Confidence 5689999999999999999873
No 175
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.53 E-value=9.1 Score=38.01 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-PETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-~g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++.. |++++-+|.+-+... + -...+.|
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGA-LLPEDVRDR--------VRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 44455567778899999988777765 777665443 34444332 467899999988752 2 2244689
Q ss_pred CcEEEc-----CC---CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-C------CeEEeCCCCC
Q 015201 310 VDVIGL-----DW---TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-R------GHILNLGHGV 374 (411)
Q Consensus 310 ~d~l~~-----d~---~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~------gfIls~gc~i 374 (411)
++.+.. .. ..+++.+...+.. . |+++. -+.+.+.+.++..+....+ . +++++-
T Consensus 215 a~~iD~Sl~GlG~~aGN~~tE~lv~~L~~-~----g~~tg---idl~~l~~~a~~~~~p~~~~~~~~~~~~~~~g~---- 282 (337)
T PRK08195 215 ATRIDGSLAGLGAGAGNTPLEVLVAVLDR-M----GWETG---VDLYKLMDAAEDLVRPLMDRPVRVDREALTLGY---- 282 (337)
T ss_pred CCEEEecChhhcccccCccHHHHHHHHHh-c----CCCCC---cCHHHHHHHHHHHHhhhccCCCCCCHHHHhhhh----
Confidence 998742 11 2355554433321 1 22221 1345555555556555442 1 333322
Q ss_pred CCCCcHHHHHHHHHHHHhcCC
Q 015201 375 LVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a~~~yg~ 395 (411)
.++.-..+...-+++++||-
T Consensus 283 -ag~~s~~~~~~~~~~~~~~~ 302 (337)
T PRK08195 283 -AGVYSSFLLHAERAAERYGV 302 (337)
T ss_pred -cccchhhHHHHHHHHHHhCC
Confidence 34445556666667777753
No 176
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=80.39 E-value=12 Score=35.76 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDVI 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~l 313 (411)
.++++.+.++|++.|.+.|..| .++|+...+ ++..+++.. ++++-+|.+.+... + .. -.+.|++.+
T Consensus 144 ~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~--------~~~~~~~~~-~~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 144 LRVYRAVDKLGVNRVGIADTVG-IATPRQVYE--------LVRTLRGVV-SCDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHHHHcCCCEEEECCcCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 3556666788999998877766 578876444 344555544 47889999988652 3 22 336799987
Q ss_pred E
Q 015201 314 G 314 (411)
Q Consensus 314 ~ 314 (411)
.
T Consensus 214 d 214 (262)
T cd07948 214 D 214 (262)
T ss_pred E
Confidence 4
No 177
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=80.28 E-value=25 Score=33.37 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc---EEEcCCCCCHHHHHHHhC--CCeeEEccCCcCccC
Q 015201 271 SEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD---VIGLDWTVDMADGRKRLG--NDISVQGNVDPACLF 344 (411)
Q Consensus 271 ~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d---~l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~L~ 344 (411)
-...+++.++.+++. +.|+++|+.+... .++.+++.+.. ++++ +.-+...+++.+. -.+.| .+...+
T Consensus 112 Q~~vf~~ql~lA~~~--~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~-fsG~~~~a~~~l~~G~~iS~----~g~it~ 184 (258)
T PRK11449 112 QQWLLDEQLKLAKRY--DLPVILHSRRTHDKLAMHLKRHDLPRTGVVHG-FSGSLQQAERFVQLGYKIGV----GGTITY 184 (258)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecCccHHHHHHHHhcCCCCCeEEEc-CCCCHHHHHHHHHCCCEEEe----Cccccc
Confidence 346677777888877 7999999999887 57888876542 5555 2235666666553 23333 332223
Q ss_pred CCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-------CcHHHHHHHHHHHHhc
Q 015201 345 SPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG-------TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 345 gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-------tp~Eni~a~~~a~~~y 393 (411)
...++ .+++++......+.+-|++...+- --|.++...++.+-+.
T Consensus 185 ~~~~~----~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l 236 (258)
T PRK11449 185 PRASK----TRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCEL 236 (258)
T ss_pred cCcHH----HHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 22333 455555554468899998865221 1156666666664444
No 178
>PRK08185 hypothetical protein; Provisional
Probab=80.25 E-value=44 Score=32.36 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+..+|.-..... ...+. + +.++.+.+.+.. .+|+.+|.+-..+ .+....+.|++.+
T Consensus 26 ~~avi~AAee~~sPvIl~~~~~~~~~~~~----~-~~~~~~~~a~~~-----~vPV~lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 26 LRAVVEEAEANNAPAIIAIHPNELDFLGD----N-FFAYVRERAKRS-----PVPFVIHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred HHHHHHHHHHhCCCEEEEeCcchhhhccH----H-HHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455667778888875333222 23331 2 456666555543 5899999974433 5777888999999
Q ss_pred EcCCC-CC----HHHHH------HHhCCCe----eEEccCCcC-------ccCCCHHHHHHHHHHH-HHHhCCCCeEEeC
Q 015201 314 GLDWT-VD----MADGR------KRLGNDI----SVQGNVDPA-------CLFSPLPALTDEIQRV-VKCAGSRGHILNL 370 (411)
Q Consensus 314 ~~d~~-~d----i~~~~------~~~g~~~----~l~G~vd~~-------~L~gt~eeV~~ev~~~-i~~~~~~gfIls~ 370 (411)
.+|.. .+ +...+ +.+|-.+ -..|+..-. .++-+|||+.+.+++. ++.+ ..-+++
T Consensus 96 M~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~L---AvaiGt 172 (283)
T PRK08185 96 MIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTL---AVAIGT 172 (283)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEE---EeccCc
Confidence 88643 22 22222 3333111 112221111 1123788887777663 4433 222334
Q ss_pred CCCC-----CCCCcHHHHHHHHHHH
Q 015201 371 GHGV-----LVGTPEEAVAHFFEVG 390 (411)
Q Consensus 371 gc~i-----~~~tp~Eni~a~~~a~ 390 (411)
-|++ .|+.++|.++.+.+.+
T Consensus 173 ~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 173 AHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred ccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 4554 2556777777776643
No 179
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=80.14 E-value=36 Score=31.27 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=75.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 015201 221 TAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG 300 (411)
Q Consensus 221 ~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~ 300 (411)
-||++. +...+.+++..++|+|+|.++-+.+ ++++... ++++.+|+.. ++|+++.. |+..
T Consensus 5 iDP~k~--------e~~~~ia~~v~~~gtDaI~VGGS~g--vt~~~~~--------~~v~~ik~~~-~lPvilfp-~~~~ 64 (205)
T TIGR01769 5 IDPEKS--------DEIEKIAKNAKDAGTDAIMVGGSLG--IVESNLD--------QTVKKIKKIT-NLPVILFP-GNVN 64 (205)
T ss_pred cCCCcH--------HHHHHHHHHHHhcCCCEEEEcCcCC--CCHHHHH--------HHHHHHHhhc-CCCEEEEC-CCcc
Confidence 367766 2233466778899999998865422 3444433 3456667654 78999864 4443
Q ss_pred -cHhHHhcCCCcEE---EcCCCCC------H-HHHH---HHhCCCeeEEcc--CCcC----cc-------CCCHHHHHHH
Q 015201 301 -FLERMKGTGVDVI---GLDWTVD------M-ADGR---KRLGNDISVQGN--VDPA----CL-------FSPLPALTDE 353 (411)
Q Consensus 301 -~l~~~~e~g~d~l---~~d~~~d------i-~~~~---~~~g~~~~l~G~--vd~~----~L-------~gt~eeV~~e 353 (411)
..+ ++|.+ ++-+..| . .++. +++|..+...|- ++|. .+ .-++|++..+
T Consensus 65 ~i~~-----~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~ 139 (205)
T TIGR01769 65 GLSR-----YADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAY 139 (205)
T ss_pred ccCc-----CCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHH
Confidence 222 35665 2211111 1 2223 556654444444 3332 11 1356666555
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 354 v~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~ 390 (411)
+.- .+..|-.-+-|--+.+....++++-++++.+..
T Consensus 140 a~a-a~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~ 175 (205)
T TIGR01769 140 CLA-AKYFGMKWVYLEAGSGASYPVNPETISLVKKAS 175 (205)
T ss_pred HHH-HHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh
Confidence 433 333333456665556665557766665555543
No 180
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=79.90 E-value=21 Score=35.47 Aligned_cols=122 Identities=22% Similarity=0.343 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHH------------
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA------------ 236 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~------------ 236 (411)
...+++|++++... .|.+ =-.+++|-..+.. |+ |- ..|.++||+|++++..+...
T Consensus 85 p~~ll~Aa~lv~~y-~D~i--dlNcGCPq~~a~~--g~-----yG---a~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 85 PENLLKAARLVQPY-CDGI--DLNCGCPQKVAKR--GG-----YG---AFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred HHHHHHHHHHhhhh-cCcc--cccCCCCHHHHhc--CC-----cc---ceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 34567777766554 3543 3468889665543 43 21 46789999999999988654
Q ss_pred -----HHHHHHHHHHhCCCEEEEecCCC---C-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhH
Q 015201 237 -----IADYIIYQVESGAHCIQIFDSWG---G-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LER 304 (411)
Q Consensus 237 -----~~~~~~~~~e~G~d~i~i~D~~~---~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~ 304 (411)
.++|++...++|++.+.++.-.. | ...|-.|+- +..+++..+.+|+ -.-|++.. .+.
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~---------i~~v~~~~~~ipv--iaNGnI~~~~d~~~ 220 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEA---------IKAVRENVPDIPV--IANGNILSLEDVER 220 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHH---------HHHHHHhCcCCcE--EeeCCcCcHHHHHH
Confidence 57899999999999998886432 3 466666543 4445544334554 46688763 444
Q ss_pred H-hcCCCcEEE
Q 015201 305 M-KGTGVDVIG 314 (411)
Q Consensus 305 ~-~e~g~d~l~ 314 (411)
. +.+|+|++.
T Consensus 221 ~~~~tG~dGVM 231 (358)
T KOG2335|consen 221 CLKYTGADGVM 231 (358)
T ss_pred HHHHhCCceEE
Confidence 4 448999984
No 181
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.81 E-value=35 Score=32.15 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~~~e~g~d~l~ 314 (411)
.+.++.+.++|++.+.+.|-.+.. +....-+...+++.+.+ ++| +...|.... ++.+.+.|++.+.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~----~~~~~~~~~i~~i~~~~-----~ip--v~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS----EGRDTMLDVVERVAEQV-----FIP--LTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc----ccCcchHHHHHHHHHhC-----CCC--EEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 345666668899999999865431 11123344444444433 456 456777653 5556678999987
Q ss_pred cCCC-----CCHHHHHHHhC-CCeeEEccCC------c-Cc-cC-C---CHHHHHHHHHHHHHHhCCCCeEEeC--CCCC
Q 015201 315 LDWT-----VDMADGRKRLG-NDISVQGNVD------P-AC-LF-S---PLPALTDEIQRVVKCAGSRGHILNL--GHGV 374 (411)
Q Consensus 315 ~d~~-----~di~~~~~~~g-~~~~l~G~vd------~-~~-L~-g---t~eeV~~ev~~~i~~~~~~gfIls~--gc~i 374 (411)
+... --+.++.+.|| +++++.=++. + .. .. | +.....+.++++.+ .+-..+|+.+ ..+.
T Consensus 102 igt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~~~ii~~~i~~~g~ 180 (253)
T PRK02083 102 INSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-LGAGEILLTSMDRDGT 180 (253)
T ss_pred EChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH-cCCCEEEEcCCcCCCC
Confidence 6532 13667778886 4455443221 1 11 11 1 22234444444433 3334566643 2244
Q ss_pred CCCCcHHHHHHHHHH
Q 015201 375 LVGTPEEAVAHFFEV 389 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a 389 (411)
..+.+.+.++.+.+.
T Consensus 181 ~~g~d~~~i~~~~~~ 195 (253)
T PRK02083 181 KNGYDLELTRAVSDA 195 (253)
T ss_pred CCCcCHHHHHHHHhh
Confidence 456666666666554
No 182
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=79.72 E-value=8.4 Score=37.09 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-c-HhHHhcCCCc
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-F-LERMKGTGVD 311 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~-l~~~~e~g~d 311 (411)
.|-.|+.+++++|+|||+|+. -++-|+++|++|. +.++ . =+|+.+-.-|.+. + ++.+.++|+.
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~----~al~~~e~i~~f~--------~av~--~-pl~~N~t~~g~tp~~~~~~L~~~Gv~ 229 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP----EALTDLEEIRAFA--------EAVP--V-PLPANITEFGKTPLLTVAELAELGVK 229 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEcc----ccCCCHHHHHHHH--------HhcC--C-CeeeEeeccCCCCCcCHHHHHhcCce
Confidence 566778899999999999853 2456788888763 4453 1 1355555667765 3 6899999999
Q ss_pred EEEcCC
Q 015201 312 VIGLDW 317 (411)
Q Consensus 312 ~l~~d~ 317 (411)
.+++..
T Consensus 230 ~V~~~~ 235 (289)
T COG2513 230 RVSYGL 235 (289)
T ss_pred EEEECc
Confidence 987753
No 183
>PLN02321 2-isopropylmalate synthase
Probab=79.66 E-value=31 Score=37.28 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHH
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQ 269 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~e 269 (411)
--+++++.+.+.|+|.|-++- .+.||+.|+.
T Consensus 109 eKl~Ia~~L~~lGVd~IEvGf---P~~Sp~D~e~ 139 (632)
T PLN02321 109 EKLDIARQLAKLGVDIIEAGF---PIASPDDLEA 139 (632)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---cCCCccHHHH
Confidence 345667788899999986521 2588887654
No 184
>PLN02705 beta-amylase
Probab=79.64 E-value=1.8 Score=45.46 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC----EEEEecCCc-c----c-H-hHHh
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP----IVLYINGNG-G----F-L-ERMK 306 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~----~~~H~CG~~-~----~-l-~~~~ 306 (411)
...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.+ +-+|-||.. . + | .++.
T Consensus 271 ~a~L~aLK~aGVdGV-mvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~--GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~ 347 (681)
T PLN02705 271 RQELSHMKSLNVDGV-VVDCWWGIVEGWNPQKYVWSGYRELFNIIREF--KLKLQVVMAFHEYGGNASGNVMISLPQWVL 347 (681)
T ss_pred HHHHHHHHHcCCCEE-EEeeeeeEeecCCCCcCCcHHHHHHHHHHHHc--CCeEEEEEEeeccCCCCCCcccccCCHHHH
Confidence 345567788999998 55776665443333678899999999999998 444 357988642 1 2 4 3445
Q ss_pred cCC---CcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-ccC-CCHHHHHHHHHHHH
Q 015201 307 GTG---VDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-CLF-SPLPALTDEIQRVV 358 (411)
Q Consensus 307 e~g---~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~L~-gt~eeV~~ev~~~i 358 (411)
+.| .|++-.|.. .++ ++=+|.=++|.. +|. -||-+++.+.-+-.
T Consensus 348 e~g~~nPDifftDr~-----G~r---n~EyLSlg~D~~pvl~GRTplq~Y~DFM~SF 396 (681)
T PLN02705 348 EIGKDNQDIFFTDRE-----GRR---NTECLSWSIDKERVLKGRTGIEVYFDFMRSF 396 (681)
T ss_pred HhcccCCCceeecCC-----CCc---ccceeeeecCcccccCCCCHHHHHHHHHHHH
Confidence 543 344433321 000 112333345554 344 57777766655444
No 185
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=79.21 E-value=9.3 Score=44.14 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g 309 (411)
.++.++.++.+.++|+|.|++.|. +|++.|....+ ++..+++.. ++|+-+|++.+... + ..+ .+.|
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt-~Gll~P~~~~~--------Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaG 757 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDM-AGLLKPAAAKL--------LIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAG 757 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCC-cCCcCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhC
Confidence 466778888889999999977665 45688876544 455666554 67899999877652 3 333 3679
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|.++.
T Consensus 758 ad~vD~ 763 (1143)
T TIGR01235 758 VDVVDV 763 (1143)
T ss_pred CCEEEe
Confidence 999853
No 186
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=79.17 E-value=53 Score=33.89 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC-CCCHHHH
Q 015201 249 AHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW-TVDMADG 324 (411)
Q Consensus 249 ~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~-~~di~~~ 324 (411)
..+|.+.. +| .++.|+ +.+. .+..+++..+++.+.+-++|... .++.+.+.|+|.+.++- .+|.+.-
T Consensus 79 ~~~V~iaG-~GEPLl~~e----~~~~----~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~ 149 (442)
T TIGR01290 79 LSVVGIAG-PGDPLANIG----KTFQ----TLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVG 149 (442)
T ss_pred CCEEEEec-CCCcccCcc----ccHH----HHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHH
Confidence 45565542 33 377763 2222 23344443346777888889753 57889999999887653 3465555
Q ss_pred HHHhCCCeeEEccCCcCccCC-CHHH-HHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 325 RKRLGNDISVQGNVDPACLFS-PLPA-LTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 325 ~~~~g~~~~l~G~vd~~~L~g-t~ee-V~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
++.++ .+ ..+|- .+.| +... ..+.+.+.|+.+...|..+.....+-|+.+.+++.++.+.+++.|.
T Consensus 150 ~~Iy~-~v-~~~g~---~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg~ 217 (442)
T TIGR01290 150 EKIYP-WV-WYEGE---RYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKQVKELGA 217 (442)
T ss_pred hhcch-hh-ccccc---cccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCCC
Confidence 55443 11 11111 1111 1112 2344444444443323333333444567777999999999999874
No 187
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=79.10 E-value=12 Score=37.64 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+++.+++++..++|+|.|.+.|..|. ++|+.+.+++ +.+++.. ++++-+|.+-+... + .. -.+.|+
T Consensus 142 ~~l~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~lv--------~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa 211 (365)
T TIGR02660 142 DFLVELAEVAAEAGADRFRFADTVGI-LDPFSTYELV--------RALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGA 211 (365)
T ss_pred HHHHHHHHHHHHcCcCEEEEcccCCC-CCHHHHHHHH--------HHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCC
Confidence 34445555667789999988887775 7888877654 3333332 46789999887652 2 22 336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 212 ~~vd 215 (365)
T TIGR02660 212 THVN 215 (365)
T ss_pred CEEE
Confidence 8884
No 188
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=79.03 E-value=62 Score=30.97 Aligned_cols=144 Identities=11% Similarity=0.022 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--------cHhHH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--------FLERM 305 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--------~l~~~ 305 (411)
++..+++++.+.++|++.|-++-+ ..||+. .|+.+++.+... ++..+..+...... .++..
T Consensus 19 ~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~a 87 (273)
T cd07941 19 VEDKLRIARKLDELGVDYIEGGWP---GSNPKD-----TEFFARAKKLKL---KHAKLAAFGSTRRAGVKAEEDPNLQAL 87 (273)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCC---cCCHHH-----HHHHHHHHHcCC---CCcEEEEEecccccCCCccchHHHHHH
Confidence 466678888999999999865221 356665 445565554321 12334444433211 24667
Q ss_pred hcCCCcEEEcCC-----------CCC----------HHHHHHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCC
Q 015201 306 KGTGVDVIGLDW-----------TVD----------MADGRKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 306 ~e~g~d~l~~d~-----------~~d----------i~~~~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~ 363 (411)
.+.|++.+.+-. ..+ ..+..+..|-.+++. ..+-.. -.-+++.+.+.++++.+. +.
T Consensus 88 ~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~-g~ 165 (273)
T cd07941 88 LEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEA-GA 165 (273)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhC-CC
Confidence 889999876421 111 111222345433331 111100 124688888888888764 33
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 364 RGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 364 ~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
..+.+.-..+ -..|+.+..+++.+++-
T Consensus 166 ~~i~l~DT~G---~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 166 DWLVLCDTNG---GTLPHEIAEIVKEVRER 192 (273)
T ss_pred CEEEEecCCC---CCCHHHHHHHHHHHHHh
Confidence 3454443222 34466788888887763
No 189
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=79.02 E-value=10 Score=36.62 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=70.4
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 219 CHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIF-DSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~-D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
.+.+||.+.++.+ +.|+|.+.++ .+.-+..... ..+-++.++++.+.+ ++|+++|-.-
T Consensus 151 ~~t~~eea~~f~~--------------~tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-----~iPlv~hGgS 209 (282)
T TIGR01859 151 ELADPDEAEQFVK--------------ETGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-----NIPLVLHGAS 209 (282)
T ss_pred ccCCHHHHHHHHH--------------HHCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-----CCCEEEECCC
Confidence 3567776655543 2489987643 2211111100 112233445554444 5899998764
Q ss_pred Ccc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 298 NGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 298 ~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
.+. .+....+.|++.+++....- ...+++.+.++ -+..||..+ ....+.+.+.+++.|+.++.
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs 278 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEK---KDEYDPRKILGPAREAIKETVKEKMRLFGS 278 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 544 58888999999999865321 22334444221 123566544 46678899999999998864
No 190
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.01 E-value=21 Score=32.63 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHhcCCCcEEEcC-----CCCC-----------------H----H
Q 015201 275 IREIVSLVRTKCPETPIVLYINGNGG------FLERMKGTGVDVIGLD-----WTVD-----------------M----A 322 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~e~g~d~l~~d-----~~~d-----------------i----~ 322 (411)
+++-+..+|+.+.+.-+-+-.||+.+ .+.-+.+.|.|++.+. .-.| + .
T Consensus 5 l~~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~e 84 (268)
T KOG4175|consen 5 LSETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIE 84 (268)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHH
Confidence 45667777776544445677899853 2467778899998542 1111 1 1
Q ss_pred HHHHHhC----CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 323 DGRKRLG----NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 323 ~~~~~~g----~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
-+++.-. =.+.+||-.+|.+-+|... .... ++..|..|||+ +|.|||.-..+.+.+++.|-
T Consensus 85 mvk~ar~~gvt~PIiLmgYYNPIl~yG~e~----~iq~-ak~aGanGfii-------vDlPpEEa~~~Rne~~k~gi 149 (268)
T KOG4175|consen 85 MVKEARPQGVTCPIILMGYYNPILRYGVEN----YIQV-AKNAGANGFII-------VDLPPEEAETLRNEARKHGI 149 (268)
T ss_pred HHHHhcccCcccceeeeecccHHHhhhHHH----HHHH-HHhcCCCceEe-------ccCChHHHHHHHHHHHhcCc
Confidence 1222211 2377888888854456322 2222 23334467776 45566666667666666653
No 191
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.00 E-value=27 Score=33.53 Aligned_cols=96 Identities=23% Similarity=0.348 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e 307 (411)
+-.++.++...++|+|++.+.-|.-.-.|++. +.-|++.+.+.. +.|++++.. |.. . .+..+.+
T Consensus 83 ~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~----l~~y~~~ia~~~-----~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 83 EEAIELARHAQDAGADAVLVIPPYYFKPSQEE----LIDYFRAIADAT-----DLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTSSSCCHHH----HHHHHHHHHHHS-----SSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCceEEEEeccccccchhhH----HHHHHHHHHhhc-----CCCEEEEECCCccccCCCHHHHHHHhc
Confidence 34456677788999999988877665577755 556778888554 578888886 432 2 3455666
Q ss_pred CCCcEEEc-CCCCCH---HHHHHHhCCCeeEEccCCc
Q 015201 308 TGVDVIGL-DWTVDM---ADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 308 ~g~d~l~~-d~~~di---~~~~~~~g~~~~l~G~vd~ 340 (411)
.+ ++..+ +...|+ .++.+..++++.++.|-|.
T Consensus 154 ~~-nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~ 189 (289)
T PF00701_consen 154 IP-NVVGIKDSSGDLERLIQLLRAVGPDFSVFCGDDE 189 (289)
T ss_dssp ST-TEEEEEESSSBHHHHHHHHHHSSTTSEEEESSGG
T ss_pred CC-cEEEEEcCchhHHHHHHHhhhcccCeeeeccccc
Confidence 43 55544 333344 3444555666666655554
No 192
>PRK10812 putative DNAse; Provisional
Probab=78.94 E-value=27 Score=33.38 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc----EEEcCCCCCHHHHHHHhC--CCeeEEccCCcC
Q 015201 269 QWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD----VIGLDWTVDMADGRKRLG--NDISVQGNVDPA 341 (411)
Q Consensus 269 ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d----~l~~d~~~di~~~~~~~g--~~~~l~G~vd~~ 341 (411)
+.=...+++.++..++. +.|+++|+-+... .++.+.+.+.. ++++.. -+...+++.+. -.+.+-| .
T Consensus 107 ~~Q~~vf~~ql~lA~e~--~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~fs-G~~~~a~~~~~~G~~is~~g----~ 179 (265)
T PRK10812 107 VRQQESFRHHIQIGREL--NKPVIVHTRDARADTLAILREEKVTDCGGVLHCFT-EDRETAGKLLDLGFYISFSG----I 179 (265)
T ss_pred HHHHHHHHHHHHHHHHh--CCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEeec-CCHHHHHHHHHCCCEEEECe----e
Confidence 34446666777777776 7999999887766 57777775542 455543 36666666553 2233332 2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-------CcHHHHHHHHHHHHhc
Q 015201 342 CLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG-------TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 342 ~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-------tp~Eni~a~~~a~~~y 393 (411)
..+.+.+ .++++++.....++++.+++..... -.|.++...++.+-+.
T Consensus 180 ~t~~~~~----~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l 234 (265)
T PRK10812 180 VTFRNAE----QLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVL 234 (265)
T ss_pred eecCccH----HHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHH
Confidence 2233333 3455555544468999999854211 2366777766665544
No 193
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.88 E-value=50 Score=31.94 Aligned_cols=140 Identities=10% Similarity=0.098 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+...|.-..+.. .+... +++.++.+.+.+.. .+|+.+|.+-..+ .+..-++.|++.+
T Consensus 31 ~~avi~AAee~~sPvIiq~~~~~~~~~g~----~~~~~~~~~~A~~~-----~VPV~lHLDHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 31 MQVVVETAAELHSPVIIAGTPGTFSYAGT----EYLLAIVSAAAKQY-----HHPLALHLDHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred HHHHHHHHHHhCCCEEEEcChhHHhhCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455566677888775322221 23332 23455555555543 5899999974433 5677778999999
Q ss_pred EcCCC-CC----HHHH------HHHhCCCeeE------EccCCcC-------ccCCCHHHHHHHHHH-HHHHhCCCCeEE
Q 015201 314 GLDWT-VD----MADG------RKRLGNDISV------QGNVDPA-------CLFSPLPALTDEIQR-VVKCAGSRGHIL 368 (411)
Q Consensus 314 ~~d~~-~d----i~~~------~~~~g~~~~l------~G~vd~~-------~L~gt~eeV~~ev~~-~i~~~~~~gfIl 368 (411)
.+|.. .+ +... ...+| +.+ .|+-.-. .++-+|||..+-+++ -++.+ -.-+
T Consensus 102 M~DgS~l~~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Avai 176 (284)
T PRK09195 102 MIDGSHLPFAQNISLVKEVVDFCHRFD--VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSL---AVAI 176 (284)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEE---eecc
Confidence 88742 23 2222 22233 222 2222111 124588888777764 22322 3335
Q ss_pred eCCCCCC---CCCcHHHHHHHHHHH
Q 015201 369 NLGHGVL---VGTPEEAVAHFFEVG 390 (411)
Q Consensus 369 s~gc~i~---~~tp~Eni~a~~~a~ 390 (411)
++-|++. |....+.++.+.+++
T Consensus 177 Gt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 177 GTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred CccccccCCCCcCCHHHHHHHHHHh
Confidence 5567774 456677777776654
No 194
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=78.87 E-value=65 Score=31.35 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=38.6
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE------------ecCCcc--cHhHHh
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY------------INGNGG--FLERMK 306 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H------------~CG~~~--~l~~~~ 306 (411)
++...+.|+..|++.+....... ..++.++++.+++.++++ -+| +.|... .++.++
T Consensus 45 ~~~~~~~G~~~i~l~gg~~~~~~--------~~~~~~i~~~Ik~~~~~i--~~~~~s~~e~~~~~~~~g~~~~e~l~~Lk 114 (309)
T TIGR00423 45 VKEAVAKGATEVCIQGGLNPQLD--------IEYYEELFRAIKQEFPDV--HIHAFSPMEVYFLAKNEGLSIEEVLKRLK 114 (309)
T ss_pred HHHHHHCCCCEEEEecCCCCCCC--------HHHHHHHHHHHHHHCCCc--eEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33445679999888643222222 246778899998875332 222 223332 468888
Q ss_pred cCCCcEEE
Q 015201 307 GTGVDVIG 314 (411)
Q Consensus 307 e~g~d~l~ 314 (411)
+.|++.+.
T Consensus 115 eAGl~~i~ 122 (309)
T TIGR00423 115 KAGLDSMP 122 (309)
T ss_pred HcCCCcCC
Confidence 99988773
No 195
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.87 E-value=19 Score=35.48 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
.+.++.++|+|++.|.+.-..+. + +...++++.+++.+|+++++...+........+.+.|+|.+.+
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~---~--------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGH---S--------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC---c--------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 46677888999999865332221 2 2334556677776545666654443333467788999999864
No 196
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.86 E-value=9.3 Score=36.98 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.++++++ +.|+|.+.++=... |+. .| ++=+..+++|-+.+ ++|+++|
T Consensus 152 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~p----~Ld~~~L~~I~~~~-----~vPLVLH 208 (284)
T PRK09195 152 ALYTDPAQAREFVE--------------ATGIDSLAVAIGTAHGMYKGEP----KLDFDRLENIRQWV-----NIPLVLH 208 (284)
T ss_pred ccCCCHHHHHHHHH--------------HHCcCEEeeccCccccccCCCC----cCCHHHHHHHHHHh-----CCCeEEe
Confidence 56899988877766 56888765543221 221 23 23344555555544 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCCH---HHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVDM---ADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~di---~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-.-.+. .+...++.|+.-+|+...+.. ..+++.+..+ -+.+||..+ ....+.+++.+++.|+.++.
T Consensus 209 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK09195 209 GASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEH---PEANDPRHYLQPAKSAMKDVVSKVIADCGC 280 (284)
T ss_pred cCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875544 477788899999998653321 2233333211 123677644 45678899999999998864
No 197
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.84 E-value=50 Score=29.79 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
.+.++.+++.|++.+.+-..- .+...+.+.+ +++.+..+.. ++++++| ..++...+.|+|++++.
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~---~~~~~~~~~~----~~~~~~~~~~--~~~l~~~-----~~~~~a~~~gad~vh~~ 88 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKG---LDTRERLELA----RALKELCRRY--GVPLIVN-----DRVDLALAVGADGVHLG 88 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCC---CCHHHHHHHH----HHHHHHHHHh--CCeEEEe-----ChHHHHHHcCCCEEecC
Confidence 345667888999998764332 3444444433 3333444443 5677765 35777888888888774
No 198
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=78.77 E-value=63 Score=32.50 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCCcc-c---HhHHhcCCCc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPE-TPIVLYINGNGG-F---LERMKGTGVD 311 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g-~~~~~H~CG~~~-~---l~~~~e~g~d 311 (411)
+.+..+.+.|+|+|......+. +++.+.=.+.+..- ++.+.+.+|+ ++++..+++... . .+...+.|.|
T Consensus 150 ~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~a----v~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad 225 (367)
T cd08205 150 ELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEA----VRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGAN 225 (367)
T ss_pred HHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHH----HHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 3444677889999865555664 77777665554444 4444433334 334556666654 2 2567789999
Q ss_pred EEEcC
Q 015201 312 VIGLD 316 (411)
Q Consensus 312 ~l~~d 316 (411)
++.+.
T Consensus 226 ~vmv~ 230 (367)
T cd08205 226 ALLIN 230 (367)
T ss_pred EEEEe
Confidence 98553
No 199
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=78.76 E-value=35 Score=31.22 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~ 315 (411)
.++++.+.++||+++.+.|.-+.+ =+++ .++.+++.. ++|+.+..-+... .++...+.|+|.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~------------~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLE------------DLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHH------------HHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 467788899999999988754431 2232 233343332 5787753211223 468888899999875
Q ss_pred C
Q 015201 316 D 316 (411)
Q Consensus 316 d 316 (411)
.
T Consensus 101 ~ 101 (217)
T cd00331 101 I 101 (217)
T ss_pred e
Confidence 3
No 200
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=78.75 E-value=28 Score=31.88 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEe--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe----cCCcc-cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIF--DSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI----NGNGG-FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~--D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~----CG~~~-~l~~~~e 307 (411)
+.+.+-++.+.+.|+|++.++ ++-+. .=.+..+++++.++ +.++.+|- +-+.. -++.+.+
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~dg~---------iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~ 138 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTEDGE---------IDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIE 138 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETTSS---------B-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCCCC---------cCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHh
Q ss_pred CCCcEEEcCCCCC--------HHHHHHHhCCCeeEE--ccCCcCccCCCHHHHHHHH
Q 015201 308 TGVDVIGLDWTVD--------MADGRKRLGNDISVQ--GNVDPACLFSPLPALTDEI 354 (411)
Q Consensus 308 ~g~d~l~~d~~~d--------i~~~~~~~g~~~~l~--G~vd~~~L~gt~eeV~~ev 354 (411)
+|++.+--..... ++++.+..++++.++ |||++ .+.+++.+++
T Consensus 139 lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~----~nv~~l~~~t 191 (201)
T PF03932_consen 139 LGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRA----ENVPELVEET 191 (201)
T ss_dssp HT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--T----TTHHHHHHHH
T ss_pred cCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCH----HHHHHHHHhh
No 201
>PLN02803 beta-amylase
Probab=78.60 E-value=2 Score=44.55 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE----EEEecCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI----VLYINGN 298 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~----~~H~CG~ 298 (411)
+...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.++ -+|-||.
T Consensus 109 l~~~L~~LK~~GVdGV-mvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~--GLKlq~vmSFHqCGG 171 (548)
T PLN02803 109 MNASLMALRSAGVEGV-MVDAWWGLVEKDGPMKYNWEGYAELVQMVQKH--GLKLQVVMSFHQCGG 171 (548)
T ss_pred HHHHHHHHHHcCCCEE-EEEeeeeeeccCCCCcCCcHHHHHHHHHHHHc--CCeEEEEEEecccCC
Confidence 3345667788999998 55766554443333678899999999999998 4443 5798864
No 202
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=78.57 E-value=54 Score=30.06 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHH-HhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 346 PLPALTDEIQRVVK-CAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 346 t~eeV~~ev~~~i~-~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
|||-|.+ ++. ..++.|.=+++|-..+.--+++.|++|++++++.
T Consensus 162 ~peNV~~----a~~~~~~p~gVDvsSGVE~~G~KD~~ki~~f~~~v~~~ 206 (207)
T PRK13958 162 NSENIQT----VEQLKLSHQGYDIASGIETNGRKDINKMTAIVNIVKGD 206 (207)
T ss_pred CHHHHHH----HHhcCCCCCEEEcccccCCCCCCCHHHHHHHHHHHHhc
Confidence 6666654 222 2344567778887766335788899988888754
No 203
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.56 E-value=8.8 Score=37.14 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=74.3
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++++. .|+|.+.++=... |.. .| ++=+..+++|-+.+ ++|+++|
T Consensus 152 ~~~T~peeA~~Fv~~--------------TgvD~LAvaiGt~HG~y~~~p----~Ld~~~L~~I~~~~-----~iPLVlH 208 (284)
T PRK12737 152 AMYTNPDAAAEFVER--------------TGIDSLAVAIGTAHGLYKGEP----KLDFERLAEIREKV-----SIPLVLH 208 (284)
T ss_pred ccCCCHHHHHHHHHH--------------hCCCEEeeccCccccccCCCC----cCCHHHHHHHHHHh-----CCCEEEe
Confidence 568999988877764 5888765543221 221 22 22233444444433 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-.-.+. .+...++.|+.-+|++.... ...+++.+..+ -+.+||..+ ....+.+++.+++.|+.++.
T Consensus 209 GgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK12737 209 GASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYEN---PKANDPRKYMTPGKAAMKEVVREKIKVCGS 280 (284)
T ss_pred CCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875443 47778889999999975432 22334444221 134676544 45678899999999998864
No 204
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.49 E-value=86 Score=32.63 Aligned_cols=142 Identities=18% Similarity=0.284 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-------
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG------- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~------- 299 (411)
+-+...+.++-++|.+.+ +-||| +...+-|++ ++.+-+.+ ++.++-++.-|..
T Consensus 35 ~d~l~ia~~ld~~G~~si---E~wGGAtfd~~~rfl~edpwer-----lr~~r~~~----~nt~lqmLlRG~n~vgy~~y 102 (468)
T PRK12581 35 EDMLPVLTILDKIGYYSL---ECWGGATFDACIRFLNEDPWER-----LRTLKKGL----PNTRLQMLLRGQNLLGYRHY 102 (468)
T ss_pred HHHHHHHHHHHhcCCCEE---EecCCcchhhhhcccCCCHHHH-----HHHHHHhC----CCCceeeeeccccccCccCC
Confidence 334445666667787766 44543 455555554 44444444 4567766777721
Q ss_pred ----c--cHhHHhcCCCcEEE-cCCCCCHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCC
Q 015201 300 ----G--FLERMKGTGVDVIG-LDWTVDMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRG 365 (411)
Q Consensus 300 ----~--~l~~~~e~g~d~l~-~d~~~di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~g 365 (411)
. +++...+.|+|++- +|..+|+..+ .++.|.. ..+.+.-.. -.-|.+-+.+.++++.+. |-..
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~--~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~ 179 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKE--AQLCIAYTTSPVHTLNYYLSLVKELVEM-GADS 179 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCE--EEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCE
Confidence 1 24556678999984 5665554433 2334543 222222111 023555566666666553 3223
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
+.+. +...-..|+.+..+++++++..
T Consensus 180 I~Ik---DtaG~l~P~~v~~Lv~alk~~~ 205 (468)
T PRK12581 180 ICIK---DMAGILTPKAAKELVSGIKAMT 205 (468)
T ss_pred EEEC---CCCCCcCHHHHHHHHHHHHhcc
Confidence 3332 2333456788999999988754
No 205
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=78.24 E-value=70 Score=31.18 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCEEEEecCCC----------CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWG----------GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGT 308 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~----------~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~ 308 (411)
+.++.+++.|++.|-++-+.+ ..++++. ++++++.++++ |.++.+|.++.. .++...+.
T Consensus 124 ~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~--------l~~~~~~A~~~--g~~v~~H~~~~~-~i~~~l~~ 192 (342)
T cd01299 124 AAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEE--------LRAIVDEAHKA--GLYVAAHAYGAE-AIRRAIRA 192 (342)
T ss_pred HHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHH--------HHHHHHHHHHc--CCEEEEEeCCHH-HHHHHHHc
Confidence 344556778999987765322 1455554 45577888887 688999988753 35566678
Q ss_pred CCcEEE
Q 015201 309 GVDVIG 314 (411)
Q Consensus 309 g~d~l~ 314 (411)
|++.+.
T Consensus 193 G~~~i~ 198 (342)
T cd01299 193 GVDTIE 198 (342)
T ss_pred CCCEEe
Confidence 988873
No 206
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=78.15 E-value=14 Score=35.75 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=52.7
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCC-----------------CCCHHH
Q 015201 219 CHTAPHVLRTLLSHLTQA---------------IADYIIYQVESGAHCIQIFDSWGG-----------------QLPPHM 266 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~---------------~~~~~~~~~e~G~d~i~i~D~~~~-----------------~iSp~~ 266 (411)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+.....+ .+|...
T Consensus 135 ~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 214 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPA 214 (296)
T ss_pred ccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcc
Confidence 446777777777777655 446677788899999877643222 122222
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 267 WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 267 f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
.....+++.+ .+++.. ++|++ .+|.+. ....+.+.|+|.+.+.
T Consensus 215 ~~~~~~~~i~----~i~~~~-~ipii--~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 215 IKPIALRMVY----QVYKAV-EIPII--GVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred cchHHHHHHH----HHHHhc-CCCEE--EECCCCCHHHHHHHHHcCCCEEEEc
Confidence 2223334444 444332 46644 456653 3555556898888764
No 207
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=78.03 E-value=9.5 Score=36.85 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=74.3
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-C-CC-CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-G-QL-PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~-~i-Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++.+ +.|+|.+.++=... | .- .| ++=++.+++|-+.+ ++|+++|
T Consensus 150 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~yk~~p----~Ldf~~L~~I~~~~-----~iPLVlH 206 (282)
T TIGR01858 150 ALYTDPQEAKEFVE--------------ATGVDSLAVAIGTAHGLYKKTP----KLDFDRLAEIREVV-----DVPLVLH 206 (282)
T ss_pred hccCCHHHHHHHHH--------------HHCcCEEecccCccccCcCCCC----ccCHHHHHHHHHHh-----CCCeEEe
Confidence 67899988777665 45888765443221 2 21 23 33344555554444 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-+-... .+...++.|+.-+|++...- ...+++.+..+ -+.+||..+ ..-.+.+++.+++.|+.++.
T Consensus 207 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 278 (282)
T TIGR01858 207 GASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAEN---PQANDPRYYMRPGKDAMKKVVRNKINVCGS 278 (282)
T ss_pred cCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875554 47778889999999875322 12233434221 123666544 45568899999999998864
No 208
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=77.71 E-value=56 Score=29.79 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCc---c----cHhHH----h
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNG---G----FLERM----K 306 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~---~----~l~~~----~ 306 (411)
.+++.+.++|+|.+.++-..+ ++ ..+++++.++++ |.++.+=. +... . .++.+ .
T Consensus 71 ~~~~~~~~~gad~vtvh~e~g----~~--------~l~~~i~~~~~~--g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~ 136 (215)
T PRK13813 71 LICEAVFEAGAWGIIVHGFTG----RD--------SLKAVVEAAAES--GGKVFVVVEMSHPGALEFIQPHADKLAKLAQ 136 (215)
T ss_pred HHHHHHHhCCCCEEEEcCcCC----HH--------HHHHHHHHHHhc--CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 344777889999987654322 22 356677888876 45553311 1221 1 12222 2
Q ss_pred cCCCcEEEcCCCC--CHHHHHHHhCCCee-EEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-CCCcHHH
Q 015201 307 GTGVDVIGLDWTV--DMADGRKRLGNDIS-VQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL-VGTPEEA 382 (411)
Q Consensus 307 e~g~d~l~~d~~~--di~~~~~~~g~~~~-l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-~~tp~En 382 (411)
+.|.++.-+.... .+.++++..+.++. +.|||.+.. ++ ++.+++. |..++|++.+ +- ..-|.+.
T Consensus 137 e~G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g--~~-------~~~~~~a-Gad~iV~Gr~--I~~~~d~~~~ 204 (215)
T PRK13813 137 EAGAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQG--GK-------AADAIKA-GADYVIVGRS--IYNAADPREA 204 (215)
T ss_pred HhCCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCCC--CC-------HHHHHHc-CCCEEEECcc--cCCCCCHHHH
Confidence 4688887665432 35577777775433 446666631 12 5556654 3346777654 43 2336677
Q ss_pred HHHHHHHHH
Q 015201 383 VAHFFEVGK 391 (411)
Q Consensus 383 i~a~~~a~~ 391 (411)
++++.+..+
T Consensus 205 ~~~l~~~~~ 213 (215)
T PRK13813 205 AKAINEEIR 213 (215)
T ss_pred HHHHHHHHh
Confidence 777766543
No 209
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=77.53 E-value=91 Score=33.54 Aligned_cols=139 Identities=21% Similarity=0.328 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc------
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG------ 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~------ 299 (411)
++-.+..++++.++|.+.|-+ ||| +++.+-|+. ++.+++..++.++..+.-|..
T Consensus 26 ~~d~l~ia~~ld~~G~~siE~---~GGatf~~~~~~~~e~p~e~---------lr~l~~~~~~~~lqml~Rg~n~vg~~~ 93 (593)
T PRK14040 26 LDDMLPIAAKLDKVGYWSLES---WGGATFDACIRFLGEDPWER---------LRELKKAMPNTPQQMLLRGQNLLGYRH 93 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEe---cCCcchhhhccccCCCHHHH---------HHHHHHhCCCCeEEEEecCcceecccc
Confidence 344455667777889887744 543 567766654 344444444667767776631
Q ss_pred ------c-cHhHHhcCCCcEEEc-CCCCCHHHH------HHHhCCCeeEEccC----CcCccCCCHHHHHHHHHHHHHHh
Q 015201 300 ------G-FLERMKGTGVDVIGL-DWTVDMADG------RKRLGNDISVQGNV----DPACLFSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 300 ------~-~l~~~~e~g~d~l~~-d~~~di~~~------~~~~g~~~~l~G~v----d~~~L~gt~eeV~~ev~~~i~~~ 361 (411)
. +++...+.|+|++.+ +...|+..+ .+..|.. ..|.| +| .-|.+.+.+.++++.+.
T Consensus 94 ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~--~~~~i~yt~~p---~~~~~~~~~~a~~l~~~- 167 (593)
T PRK14040 94 YADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAH--AQGTLSYTTSP---VHTLQTWVDLAKQLEDM- 167 (593)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCe--EEEEEEEeeCC---ccCHHHHHHHHHHHHHc-
Confidence 1 245566789999965 444444322 2334542 22222 23 23677777777776554
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 362 GSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 362 ~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
|. .+++. |+......|+.+..++.++++.
T Consensus 168 Ga--d~i~i-~Dt~G~l~P~~~~~lv~~lk~~ 196 (593)
T PRK14040 168 GV--DSLCI-KDMAGLLKPYAAYELVSRIKKR 196 (593)
T ss_pred CC--CEEEE-CCCCCCcCHHHHHHHHHHHHHh
Confidence 32 23333 3334445677788888887763
No 210
>PRK06852 aldolase; Validated
Probab=77.51 E-value=75 Score=31.10 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=80.7
Q ss_pred HHHHHhC------CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE--EecCCc--c--cHhH-----
Q 015201 242 IYQVESG------AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL--YINGNG--G--FLER----- 304 (411)
Q Consensus 242 ~~~~e~G------~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~--H~CG~~--~--~l~~----- 304 (411)
+..++.| ||++.+.=-+++ .++.-.+.-+.++.+.++++ |.|++. +.-|.. . ..+.
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v~~Gs-----~~E~~ml~~l~~v~~ea~~~--GlPll~~~yprG~~i~~~~~~~~ia~aa 194 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTIYLGS-----EYESEMLSEAAQIIYEAHKH--GLIAVLWIYPRGKAVKDEKDPHLIAGAA 194 (304)
T ss_pred HHHHhcCCccCCCceEEEEEEecCC-----HHHHHHHHHHHHHHHHHHHh--CCcEEEEeeccCcccCCCccHHHHHHHH
Confidence 3455666 888877666663 23444555578999999998 789875 445642 1 1122
Q ss_pred --HhcCCCcEEEcCCC-----CCHHHHHHH---hCCC-eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 305 --MKGTGVDVIGLDWT-----VDMADGRKR---LGND-ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 305 --~~e~g~d~l~~d~~-----~di~~~~~~---~g~~-~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
-.|+|.|++=+.+. -|.+..++. .|.. +.+.||=. .+.+++-+++++.++..|..|.++ |=+
T Consensus 195 RiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k-----~~~~e~L~~v~~ai~~aGa~Gv~~--GRN 267 (304)
T PRK06852 195 GVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSS-----TDPEEFLKQLYEQIHISGASGNAT--GRN 267 (304)
T ss_pred HHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCC-----CCHHHHHHHHHHHHHHcCCceeee--chh
Confidence 23789999976654 444444443 3221 33344321 266789999999998666556555 444
Q ss_pred CCC-CCc--HHHHHHHHHHHHh
Q 015201 374 VLV-GTP--EEAVAHFFEVGKS 392 (411)
Q Consensus 374 i~~-~tp--~Eni~a~~~a~~~ 392 (411)
+.. .-| .+-++|+...+++
T Consensus 268 IfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 268 IHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred hhcCCCchHHHHHHHHHHHHhC
Confidence 533 333 4455666555544
No 211
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.34 E-value=8.5 Score=38.35 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec------CCc--c-cHhHHhcCC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN------GNG--G-FLERMKGTG 309 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C------G~~--~-~l~~~~e~g 309 (411)
+-++..+++|||.|+++..--+.=.+. .+|..+.+++.++.+|++ |+.+.+=+. +-. . .++.+.++|
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a--~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRA--LNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred HHHHHHHHcCCCEEEeCCccccccccc--ccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 445677889999999987722222222 467777789999999998 554333332 222 1 356788899
Q ss_pred CcEEEcCCCCCHHHHHHHhC
Q 015201 310 VDVIGLDWTVDMADGRKRLG 329 (411)
Q Consensus 310 ~d~l~~d~~~di~~~~~~~g 329 (411)
+|.+-+...-=+.-+++.++
T Consensus 93 vDaviv~Dpg~i~l~~e~~p 112 (347)
T COG0826 93 VDAVIVADPGLIMLARERGP 112 (347)
T ss_pred CCEEEEcCHHHHHHHHHhCC
Confidence 99987743212344555543
No 212
>PLN00197 beta-amylase; Provisional
Probab=77.28 E-value=2.3 Score=44.34 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE----EEEecCCc-c----c-Hh-HHh
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI----VLYINGNG-G----F-LE-RMK 306 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~----~~H~CG~~-~----~-l~-~~~ 306 (411)
...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.++ -+|-||.. . + || ++.
T Consensus 130 ~~~L~~LK~~GVdGV-mvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~--GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~ 206 (573)
T PLN00197 130 KASLQALKSAGVEGI-MMDVWWGLVERESPGVYNWGGYNELLEMAKRH--GLKVQAVMSFHQCGGNVGDSCTIPLPKWVV 206 (573)
T ss_pred HHHHHHHHHcCCCEE-EEeeeeeeeccCCCCcCCcHHHHHHHHHHHHc--CCeEEEEEEecccCCCCCCcccccCCHHHH
Confidence 345667788999998 55766555443333678899999999999998 4443 57988642 1 2 43 344
Q ss_pred cC---CCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-ccC-CCHHHHHHHHHHHH
Q 015201 307 GT---GVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-CLF-SPLPALTDEIQRVV 358 (411)
Q Consensus 307 e~---g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~L~-gt~eeV~~ev~~~i 358 (411)
+. ..|++--|.. .++ ++=+|.=++|.. +|. -||-+++.+--+-.
T Consensus 207 ~~g~~dpDifftDr~-----G~r---n~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SF 255 (573)
T PLN00197 207 EEVDKDPDLAYTDQW-----GRR---NYEYVSLGCDTLPVLKGRTPVQCYADFMRAF 255 (573)
T ss_pred HhhccCCCceeecCC-----CCc---ccceeccccccccccCCCCHHHHHHHHHHHH
Confidence 43 3344433321 000 122444445554 244 47777666554444
No 213
>PLN02801 beta-amylase
Probab=77.22 E-value=2.4 Score=43.76 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE----EEEecCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI----VLYINGN 298 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~----~~H~CG~ 298 (411)
...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.++ -+|-||.
T Consensus 40 ~~~L~~LK~~GVdGV-mvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~--GLKlq~vmSFHqCGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGV-MVDVWWGIVESKGPKQYDWSAYRSLFELVQSF--GLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHHcCCCEE-EEeeeeeeeccCCCCccCcHHHHHHHHHHHHc--CCeEEEEEEecccCC
Confidence 345567788999998 55766554443333578899999999999998 4443 6798974
No 214
>PLN02905 beta-amylase
Probab=77.19 E-value=2.3 Score=44.95 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC----EEEEecCCc-----cc-Hh-HH
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP----IVLYINGNG-----GF-LE-RM 305 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~----~~~H~CG~~-----~~-l~-~~ 305 (411)
+...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.+ +-+|-||.. .+ || ++
T Consensus 288 l~a~L~aLK~aGVdGV-mvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~--GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 364 (702)
T PLN02905 288 LLKQLRILKSINVDGV-KVDCWWGIVEAHAPQEYNWNGYKRLFQMVREL--KLKLQVVMSFHECGGNVGDDVCIPLPHWV 364 (702)
T ss_pred HHHHHHHHHHcCCCEE-EEeeeeeeeecCCCCcCCcHHHHHHHHHHHHc--CCeEEEEEEecccCCCCCCcccccCCHHH
Confidence 3455667788999998 55766665443333678899999999999998 444 357988643 12 43 34
Q ss_pred hcC---CCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCc-cC-CCHHHHHHHHHHHH
Q 015201 306 KGT---GVDVIGLDWTVDMADGRKRLGNDISVQGNVDPAC-LF-SPLPALTDEIQRVV 358 (411)
Q Consensus 306 ~e~---g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~-L~-gt~eeV~~ev~~~i 358 (411)
.+. ..|++-.|.. .+ -++=+|.=++|..- |. -||-+++.+.-+-.
T Consensus 365 ~e~g~~nPDifftDrs-----G~---rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SF 414 (702)
T PLN02905 365 AEIGRSNPDIFFTDRE-----GR---RNPECLSWGIDKERILRGRTALEVYFDYMRSF 414 (702)
T ss_pred HHhhhcCCCceEecCC-----CC---ccCceeeeecccccccCCCCHHHHHHHHHHHH
Confidence 443 3344443321 00 01224444566653 44 57877776544443
No 215
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=76.98 E-value=49 Score=32.58 Aligned_cols=128 Identities=10% Similarity=0.056 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c----cHhHHhcCCCcEEEcCC---CCCHHHHHHHhCCCeeEEc
Q 015201 265 HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G----FLERMKGTGVDVIGLDW---TVDMADGRKRLGNDISVQG 336 (411)
Q Consensus 265 ~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~----~l~~~~e~g~d~l~~d~---~~di~~~~~~~g~~~~l~G 336 (411)
+....|+....+-+-+.+.++ |.-++++.+.+. . .++.+.+.++|++-+.. ..+..+..+..+-.+++.+
T Consensus 67 ~~~~~~~~~i~~gi~~~~~~~--gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 67 DITNPFFAEILKGIEEAAREA--GYSLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred CCCCchHHHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEe
Confidence 333367777778888888887 566788888762 1 35778889999985532 2234445555576788888
Q ss_pred cCCcC--c--c-CCCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCCC
Q 015201 337 NVDPA--C--L-FSPLPALTDEIQRVVKCAGS-RGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDN 397 (411)
Q Consensus 337 ~vd~~--~--L-~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~~ 397 (411)
...+. . . .-..+-.+..++.+++.+.+ =+||-++. ...+..+.+..+.++.++.|...
T Consensus 145 ~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~---~~~~~~~R~~Gf~~al~~~~~~~ 208 (333)
T COG1609 145 RSPPGLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPL---DSSASRERLEGYRAALREAGLPI 208 (333)
T ss_pred CCCccCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCC---ccccHhHHHHHHHHHHHHCCCCC
Confidence 76552 2 2 25666678888888887655 35555443 34466899999999999999653
No 216
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=76.76 E-value=80 Score=31.49 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=35.9
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCC-cc--cHhHHhcCCCcEEEc
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGN-GG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~ 315 (411)
.++-|+++....++++++..++ |++.+++..+ +..+.+-.-.+ .+ .++.+++.|++-+++
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~--------ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisi 119 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDI--------LLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISL 119 (353)
T ss_pred CeEEEEECCCccccCCHHHHHH--------HHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEE
Confidence 4677888777778999988744 4444443311 22222222222 22 468888999999875
No 217
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=76.76 E-value=16 Score=36.83 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+++.+.++...++|++.|.+.|..| .+.|..+.+++. .+++.. ++++-+|.+.+... + .. -.+.|+
T Consensus 145 ~~l~~~~~~~~~~Ga~~I~l~DT~G-~~~P~~v~~lv~--------~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa 214 (378)
T PRK11858 145 DFLIEFAKAAEEAGADRVRFCDTVG-ILDPFTMYELVK--------ELVEAV-DIPIEVHCHNDFGMATANALAGIEAGA 214 (378)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC-CCCHHHHHHHHH--------HHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCC
Confidence 3444555667788999999988875 588888776544 333332 46789999887652 2 22 235788
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 215 ~~vd 218 (378)
T PRK11858 215 KQVH 218 (378)
T ss_pred CEEE
Confidence 8874
No 218
>PLN02161 beta-amylase
Probab=76.75 E-value=2.4 Score=43.75 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE----EEEecC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI----VLYING 297 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~----~~H~CG 297 (411)
+...++++..+|+|+| +.|-|=|++-.+-=.+|-|-+|+++++.+++. |.++ -+|.||
T Consensus 119 l~~~L~~LK~~GVdGV-mvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~--GLKlq~vmSFHqCG 180 (531)
T PLN02161 119 LTVSLKALKLAGVHGI-AVEVWWGIVERFSPLEFKWSLYEELFRLISEA--GLKLHVALCFHSNM 180 (531)
T ss_pred HHHHHHHHHHcCCCEE-EEEeeeeeeecCCCCcCCcHHHHHHHHHHHHc--CCeEEEEEEecccC
Confidence 3345667788999998 55766554443333678899999999999998 4443 569875
No 219
>PRK15452 putative protease; Provisional
Probab=76.69 E-value=19 Score=37.23 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCEEEEecCC-C-----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE---ecCCcc------cHh
Q 015201 239 DYIIYQVESGAHCIQIFDSW-G-----GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY---INGNGG------FLE 303 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~-~-----~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H---~CG~~~------~l~ 303 (411)
+-+++.+++|||.|+++-+. + .-++. .-+++.++.+|++ |+.+.+- ...+.. .++
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~--------edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH--------ENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCH--------HHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHH
Confidence 45667889999999886532 2 23443 3477788888987 5555443 222211 245
Q ss_pred HHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEcc
Q 015201 304 RMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGN 337 (411)
Q Consensus 304 ~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~ 337 (411)
.+.++|+|++-+.+.--+..+++.+. ++.+.+.
T Consensus 84 ~l~~~gvDgvIV~d~G~l~~~ke~~p-~l~ih~s 116 (443)
T PRK15452 84 PVIAMKPDALIMSDPGLIMMVREHFP-EMPIHLS 116 (443)
T ss_pred HHHhCCCCEEEEcCHHHHHHHHHhCC-CCeEEEE
Confidence 55688999988764323445566543 3455543
No 220
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=76.45 E-value=57 Score=29.21 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=62.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE--EecCCcccHhHHhcCCCcEEEcC-
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL--YINGNGGFLERMKGTGVDVIGLD- 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~--H~CG~~~~l~~~~e~g~d~l~~d- 316 (411)
.++.+.++|+|++.+.+.. +++ ..+++++.++++ |+++++ +.+.+..........|+|.+.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~----~~~--------~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~ 134 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAA----PLS--------TIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR 134 (202)
T ss_pred HHHHHHhcCCCEEEEEeeC----CHH--------HHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcC
Confidence 3577889999999776532 122 234567778776 566664 66666553323666788886442
Q ss_pred --------CCCCHHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 317 --------WTVDMADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 317 --------~~~di~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.......+++.. .-.++.-|||++. .++++++.+. .++++++.
T Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~-----------~i~~~~~~Ga-d~vvvGsa 188 (202)
T cd04726 135 GIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPD-----------TLPEFKKAGA-DIVIVGRA 188 (202)
T ss_pred cccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHH-----------HHHHHHhcCC-CEEEEeeh
Confidence 122345555443 3357777877652 2455555432 46777765
No 221
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=76.36 E-value=19 Score=32.58 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=65.6
Q ss_pred HHHHHHhCCCEEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCC
Q 015201 241 IIYQVESGAHCIQIFDS-WGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTV 319 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~-~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~ 319 (411)
++.+.++|||++.++.- ..+-|..+.-+ .+-+..+..|+.+|--=+.. .|+..
T Consensus 87 v~llk~~GAdGfVFGaLt~dgsid~~~C~------------si~~~~rplPVTFHRAfD~~--------------~D~k~ 140 (255)
T KOG4013|consen 87 VELLKKAGADGFVFGALTSDGSIDRTSCQ------------SIIETARPLPVTFHRAFDVA--------------YDWKT 140 (255)
T ss_pred HHHHHHcCCCceEEeecCCCCCcCHHHHH------------HHHHhcCCCceeeeeehhhh--------------cCHHH
Confidence 45667899999866542 22456665432 22222336788888521111 11211
Q ss_pred CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHH
Q 015201 320 DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFE 388 (411)
Q Consensus 320 di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~ 388 (411)
=++.+-..+|=+.++..|.+|..|.|- .-++++|+. .+|.+++.|||+|- ..+.+||.....
T Consensus 141 ~lE~~l~~lGF~rvLtSG~~psAldGv-----~~i~~lie~-hkg~i~VmpG~Gi~-~sNl~~ile~s~ 202 (255)
T KOG4013|consen 141 CLEDALLDLGFKRVLTSGQEPSALDGV-----YIIRELIEL-HKGKIDVMPGCGIN-SSNLANILEWSK 202 (255)
T ss_pred HHHHHHHHhhHHHHhhcCCCcccccch-----HHHHHHHHH-hcCCEEEecCCCcc-hHHHHHHHhhcc
Confidence 122233345555667788888877663 234555554 45799999999984 445666655443
No 222
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.31 E-value=33 Score=31.69 Aligned_cols=104 Identities=11% Similarity=0.136 Sum_probs=58.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWT 318 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~ 318 (411)
+.++.+.++|+|+|.+.+. .++ ++.+.+++. ++++ +..+.....+..+.+.|+|.+.++..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~----~~~------------~~~~~~~~~--~i~~-i~~v~~~~~~~~~~~~gad~i~~~~~ 131 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG----PPA------------EVVERLKAA--GIKV-IPTVTSVEEARKAEAAGADALVAQGA 131 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC----CCH------------HHHHHHHHc--CCEE-EEeCCCHHHHHHHHHcCCCEEEEeCc
Confidence 4455667789999988654 222 223344443 4554 45665544566677789998865320
Q ss_pred -----------C---CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 319 -----------V---DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 319 -----------~---di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
. -+.++++.++-.+++.|||.+ ++++ +++++ .+.-|+++++.-
T Consensus 132 ~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~------~~~v----~~~l~-~GadgV~vgS~l 188 (236)
T cd04730 132 EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIAD------GRGI----AAALA-LGADGVQMGTRF 188 (236)
T ss_pred CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCC------HHHH----HHHHH-cCCcEEEEchhh
Confidence 1 134455555556777777765 3433 44443 344567776653
No 223
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.25 E-value=75 Score=30.75 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHH----HHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWE----QWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVD 311 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~----ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d 311 (411)
...+++..+.+...|.- ++|...+ +.+.++.+.+.+.. .+|+.+|.+-... .+..-.+.|++
T Consensus 32 ~avi~AAe~~~sPvIl~-------~~~~~~~~~g~~~~~~~~~~~A~~~-----~vPV~lHLDH~~~~e~i~~Ai~~Gft 99 (283)
T PRK07998 32 ISILNAIERSGLPNFIQ-------IAPTNAQLSGYDYIYEIVKRHADKM-----DVPVSLHLDHGKTFEDVKQAVRAGFT 99 (283)
T ss_pred HHHHHHHHHhCCCEEEE-------CcHhHHhhCCHHHHHHHHHHHHHHC-----CCCEEEECcCCCCHHHHHHHHHcCCC
Confidence 34455666778887743 3333332 23444444443333 6899999974333 46666788999
Q ss_pred EEEcCCC-CCH----H------HHHHHhCCCeeE---EccC----Cc----CccCCCHHHHHHHHHHHH-HHhCCCCeEE
Q 015201 312 VIGLDWT-VDM----A------DGRKRLGNDISV---QGNV----DP----ACLFSPLPALTDEIQRVV-KCAGSRGHIL 368 (411)
Q Consensus 312 ~l~~d~~-~di----~------~~~~~~g~~~~l---~G~v----d~----~~L~gt~eeV~~ev~~~i-~~~~~~gfIl 368 (411)
.+.+|.. .+. . +..+.+| +++ .|.| |. ..++-+||++.+-+++.= +.+ -.-+
T Consensus 100 SVM~DgS~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L---Avai 174 (283)
T PRK07998 100 SVMIDGAALPFEENIAFTKEAVDFAKSYG--VPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDML---AVSI 174 (283)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCee---ehhc
Confidence 9987642 232 2 2233344 333 2222 11 123468888866665421 111 2224
Q ss_pred eCCCCCC--CCCcHHHHHHHHHH
Q 015201 369 NLGHGVL--VGTPEEAVAHFFEV 389 (411)
Q Consensus 369 s~gc~i~--~~tp~Eni~a~~~a 389 (411)
++-|++- |+...|.++.+.++
T Consensus 175 Gt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 175 GNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred cccccCCCCCCcCHHHHHHHHhh
Confidence 4455554 45556666666554
No 224
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=76.02 E-value=70 Score=30.81 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
.+...+++..+.+.++|.-..+.. .+.+ -+++.++.+.+.+.. .+|+.+|.+-..+ .+..-++.|++.
T Consensus 25 ~~~avi~AAe~~~sPvIi~~~~~~~~~~~----~~~~~~~~~~~a~~~-----~VPV~lHLDH~~~~~~i~~ai~~GftS 95 (276)
T cd00947 25 TLKAILEAAEETRSPVILQISEGAIKYAG----LELLVAMVKAAAERA-----SVPVALHLDHGSSFELIKRAIRAGFSS 95 (276)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhhhCC----HHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHhCCCE
Confidence 334455566677888875333222 2333 244566666655444 5899999974433 566677889999
Q ss_pred EEcCCCC-----CHHHHH------HHhCCCeeE---EccC---C-c----CccCCCHHHHHHHHHHH-HHHhCCCCeEEe
Q 015201 313 IGLDWTV-----DMADGR------KRLGNDISV---QGNV---D-P----ACLFSPLPALTDEIQRV-VKCAGSRGHILN 369 (411)
Q Consensus 313 l~~d~~~-----di~~~~------~~~g~~~~l---~G~v---d-~----~~L~gt~eeV~~ev~~~-i~~~~~~gfIls 369 (411)
+.+|... ++...+ +.+| +.+ .|.| . . ..++-+||++.+.+++. ++.+ -.-++
T Consensus 96 VMiD~S~l~~eeNi~~t~~vv~~ah~~g--v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L---AvsiG 170 (276)
T cd00947 96 VMIDGSHLPFEENVAKTKEVVELAHAYG--VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL---AVAIG 170 (276)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE---EeccC
Confidence 9887432 232222 2232 333 2222 1 1 12346788888877763 2222 22244
Q ss_pred CCCCCC----CCCcHHHHHHHHHHH
Q 015201 370 LGHGVL----VGTPEEAVAHFFEVG 390 (411)
Q Consensus 370 ~gc~i~----~~tp~Eni~a~~~a~ 390 (411)
+-|++- |...+|.++.+.+++
T Consensus 171 t~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 171 TSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred ccccccCCCCCccCHHHHHHHHHHh
Confidence 456654 335666666666655
No 225
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=75.93 E-value=51 Score=31.94 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~ 314 (411)
+...+++..+.+..+|.- +|+..++-.-.+++..++..+.+.. .+|+.+|.+-... .+..-++.|++.+.
T Consensus 31 ~~avi~AAee~~sPvIlq-------~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~i~~ai~~GFtSVM 102 (286)
T PRK12738 31 IQAILEVCSEMRSPVILA-------GTPGTFKHIALEEIYALCSAYSTTY-NMPLALHLDHHESLDDIRRKVHAGVRSAM 102 (286)
T ss_pred HHHHHHHHHHHCCCEEEE-------cCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCeEe
Confidence 344555667778887742 3333333223333333443333332 6899999974433 56667788999998
Q ss_pred cCCC-CC----HHHHHH------HhCCCeeE------EccC-Cc---C---ccCCCHHHHHHHHHHH-HHHhCCCCeEEe
Q 015201 315 LDWT-VD----MADGRK------RLGNDISV------QGNV-DP---A---CLFSPLPALTDEIQRV-VKCAGSRGHILN 369 (411)
Q Consensus 315 ~d~~-~d----i~~~~~------~~g~~~~l------~G~v-d~---~---~L~gt~eeV~~ev~~~-i~~~~~~gfIls 369 (411)
+|.. .+ +...++ .+| +.+ .|+. |. . .++-+||++.+-+++. ++.+ -.-++
T Consensus 103 ~DgS~lp~eeNi~~T~evv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L---AvaiG 177 (286)
T PRK12738 103 IDGSHFPFAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL---AVAIG 177 (286)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEE---EeccC
Confidence 8742 22 332322 222 222 2222 11 1 1345788887777653 2222 23345
Q ss_pred CCCCCC---CCCcHHHHHHHHHHH
Q 015201 370 LGHGVL---VGTPEEAVAHFFEVG 390 (411)
Q Consensus 370 ~gc~i~---~~tp~Eni~a~~~a~ 390 (411)
+.|++- |....+.++.+.+++
T Consensus 178 t~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 178 TAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred cccCCCCCCCcCCHHHHHHHHHHh
Confidence 557764 445666666665544
No 226
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=75.90 E-value=14 Score=35.56 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=74.7
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC---CHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL---PPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i---Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
..+|.+||.+.++++. .|+|.+.++=... |.. .|+ +=+..+++|-+.+ ++|++
T Consensus 144 ~~~~T~pe~a~~Fv~~--------------TgvD~LAvsiGt~HG~Y~~~~p~----L~~~~L~~i~~~~-----~vPLV 200 (276)
T cd00947 144 EGLLTDPEEAEEFVEE--------------TGVDALAVAIGTSHGAYKGGEPK----LDFDRLKEIAERV-----NVPLV 200 (276)
T ss_pred cccCCCHHHHHHHHHH--------------HCCCEEEeccCccccccCCCCCc----cCHHHHHHHHHHh-----CCCEE
Confidence 4678999888777664 5788765443211 221 232 2233455555555 58999
Q ss_pred EEecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 293 LYINGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 293 ~H~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
+|-+-... .+....+.|+.-+|+...+- ...+++.+... -+..|+..+ ....+.+.+.+++.|+.++.
T Consensus 201 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 201 LHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAEN---PKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99875554 47778899999999865331 22334444211 133566544 46677899999999988753
No 227
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=75.86 E-value=37 Score=31.27 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC--CcEE-EcCCCCCHHHHHHHhCCCeeEEccCCcCccCCC
Q 015201 271 SEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG--VDVI-GLDWTVDMADGRKRLGNDISVQGNVDPACLFSP 346 (411)
Q Consensus 271 ~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g--~d~l-~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt 346 (411)
-.+.++++++.+.+. +.|+++|+.+... .++.+.+.| ..++ +... -+...+++.....+-+ .+++..+..+
T Consensus 106 q~~~~~~~~~~a~e~--~~pv~iH~~~~~~~~~~l~~~~~~~~~~i~H~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~~ 180 (251)
T cd01310 106 QKEVFRAQLELAKEL--NLPVVIHSRDAHEDVLEILKEYGPPKRGVFHCFS-GSAEEAKELLDLGFYI--SISGIVTFKN 180 (251)
T ss_pred HHHHHHHHHHHHHHh--CCCeEEEeeCchHHHHHHHHhcCCCCCEEEEccC-CCHHHHHHHHHcCCEE--EeeeeeccCC
Confidence 347777788888887 7999999655544 457788876 2332 3322 3455666554322222 2233223333
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 347 LPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
++ +++++++..+..+++++++..
T Consensus 181 ~~----~~~~~~~~~~~dril~~TD~p 203 (251)
T cd01310 181 AN----ELREVVKEIPLERLLLETDSP 203 (251)
T ss_pred CH----HHHHHHHhCChHHEEEcccCC
Confidence 33 345556666557899999864
No 228
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=75.78 E-value=1.1e+02 Score=32.38 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-c--CCc----c-cHhHH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-N--GNG----G-FLERM 305 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-C--G~~----~-~l~~~ 305 (411)
++..+++++.+.++|+|.|-++-+ ..||+.|+ +.+++.+.--+ +..+.... | ++. . .++.+
T Consensus 26 ~e~Kl~ia~~L~~~Gvd~IEvG~p---~as~~d~~-----~~~~i~~~~l~---~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 26 VEDKLRIARKLDELGVDYIEGGWP---GSNPKDTE-----FFKRAKELKLK---HAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---cCChhHHH-----HHHHHHHhCCC---CcEEEEEeeccccCCCcccHHHHHHH
Confidence 345567788888999999865322 36677643 24555431101 22333222 2 111 1 24567
Q ss_pred hcCCCcEEEc
Q 015201 306 KGTGVDVIGL 315 (411)
Q Consensus 306 ~e~g~d~l~~ 315 (411)
.+.|++.+++
T Consensus 95 ~~~g~~~i~i 104 (524)
T PRK12344 95 LDAGTPVVTI 104 (524)
T ss_pred HhCCCCEEEE
Confidence 7788887765
No 229
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=75.77 E-value=38 Score=32.83 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--ccHhHHhcCCCcEEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--GFLERMKGTGVDVIG 314 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--~~l~~~~e~g~d~l~ 314 (411)
+...+++..+.+.++|. .+||...+.+..+++-.++..+.+.. ++|+.+|.+-.. ..+..-++.|++.+.
T Consensus 30 ~~avi~AAe~~~sPvIl-------q~~~~~~~~~~~~~~~~~~~~~a~~~-~vPValHLDH~~~~e~i~~ai~~GftSVM 101 (287)
T PF01116_consen 30 ARAVIEAAEELNSPVIL-------QISPSEVKYMGLEYLAAMVKAAAEEA-SVPVALHLDHGKDFEDIKRAIDAGFTSVM 101 (287)
T ss_dssp HHHHHHHHHHTTS-EEE-------EEEHHHHHHHHHHHHHHHHHHHHHHS-TSEEEEEEEEE-SHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHHhCCCEEE-------EcchhhhhhhhHHHHHHHHHHHHHHc-CCCEEeecccCCCHHHHHHHHHhCccccc
Confidence 34455667777888874 47887777776777777776666554 799999997332 256777778999988
Q ss_pred cCC
Q 015201 315 LDW 317 (411)
Q Consensus 315 ~d~ 317 (411)
+|.
T Consensus 102 ~Dg 104 (287)
T PF01116_consen 102 IDG 104 (287)
T ss_dssp EE-
T ss_pred ccC
Confidence 874
No 230
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=75.75 E-value=42 Score=30.97 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
.+.++..++.|++.+++-+-.. +.+.+ ...-+++.+.++++ +++++++- .++.-.+.|.|++|+..
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~---~~~~~----~~~a~~~~~lc~~~--~v~liINd-----~~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDL---SDEEY----LALAEKLRALCQKY--GVPLIIND-----RVDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCC---ChHHH----HHHHHHHHHHHHHh--CCeEEecC-----cHHHHHhCCCCEEEcCC
Confidence 4667788899999998865332 22233 45566778888877 67766532 46666689999999965
Q ss_pred -CCCHHHHHHHhCCCeeE
Q 015201 318 -TVDMADGRKRLGNDISV 334 (411)
Q Consensus 318 -~~di~~~~~~~g~~~~l 334 (411)
.+++.++++.+++++.+
T Consensus 90 ~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 90 DDMPLAEARELLGPGLII 107 (211)
T ss_pred cccchHHHHHhcCCCCEE
Confidence 47889999988876544
No 231
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.72 E-value=45 Score=31.32 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCCCEEEEe-----cCCcc-cHhHHhcCCCcEEEcC
Q 015201 277 EIVSLVRTKCPETPIVLYI-----NGNGG-FLERMKGTGVDVIGLD 316 (411)
Q Consensus 277 ~i~~~i~~~~~g~~~~~H~-----CG~~~-~l~~~~e~g~d~l~~d 316 (411)
++++.+++.. ++|++++. .-+.. +++.+.+.|++.+.+.
T Consensus 64 ~~v~~vr~~~-~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 64 PLLEEVRKDV-SVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred HHHHHHhccC-CCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 4666666543 67875542 11222 5788999999999763
No 232
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=75.71 E-value=52 Score=32.33 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHH-------------
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA------------- 236 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~------------- 236 (411)
..+.++++.+.+ .+-+. +=-.+++|-.....--+| ..+.++|+.+.++++.+.+.
T Consensus 77 ~~~~~aa~~~~~-~g~d~-IdlN~gCP~~~v~~~g~G----------s~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 77 KEMADAARINVE-SGAQI-IDINMGCPAKKVNRKLAG----------SALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred HHHHHHHHHHHH-CCCCE-EEEeCCCCHHHHcCCCcc----------cHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 445667766544 33222 344677887543321111 25778999999999988653
Q ss_pred ------HHHHHHHHHHhCCCEEEEecCCC-CCCCH-HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHH
Q 015201 237 ------IADYIIYQVESGAHCIQIFDSWG-GQLPP-HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERM 305 (411)
Q Consensus 237 ------~~~~~~~~~e~G~d~i~i~D~~~-~~iSp-~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~ 305 (411)
..++++.+.++|+|.|.+..-.. ...+. .. +.+ +..+++.. ++|++ .+|++. ....+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~-----~~~----i~~ik~~~-~iPVI--~nGgI~s~~da~~~ 212 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE-----YDS----IRAVKQKV-SIPVI--ANGDITDPLKARAV 212 (321)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcC-----hHH----HHHHHHhc-CCcEE--EeCCCCCHHHHHHH
Confidence 34667777889999998775322 22222 22 233 44444432 56743 567764 24444
Q ss_pred h-cCCCcEEEcC
Q 015201 306 K-GTGVDVIGLD 316 (411)
Q Consensus 306 ~-e~g~d~l~~d 316 (411)
. ..|+|++.+.
T Consensus 213 l~~~gadgVmiG 224 (321)
T PRK10415 213 LDYTGADALMIG 224 (321)
T ss_pred HhccCCCEEEEC
Confidence 5 4799999775
No 233
>PRK06801 hypothetical protein; Provisional
Probab=75.64 E-value=40 Score=32.65 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.++..|.-..... .+.+. +.+.++.+.+.+.. .+|+.+|.+-... .++.-.+.|++.+
T Consensus 31 ~~avi~AAe~~~~PvIl~~~~~~~~~~~~----~~~~~~~~~~a~~~-----~vpV~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 31 LRALFAAAKQERSPFIINIAEVHFKYISL----ESLVEAVKFEAARH-----DIPVVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred HHHHHHHHHHHCCCEEEEeCcchhhcCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHhCCcEE
Confidence 33455566677888875332222 23443 33444444444433 6899999974433 5677788899999
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
.+|.
T Consensus 102 m~D~ 105 (286)
T PRK06801 102 MFDG 105 (286)
T ss_pred EEcC
Confidence 8864
No 234
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=75.35 E-value=44 Score=32.85 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 240 YIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPET-PIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~-~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.++.+.+.|+..|.+.. | .++.++. .++++.+++.+ +. .+.+.+-|..- .++.+++.|++.+++
T Consensus 53 li~~~~~~Gv~~I~~tG--GEPllr~dl---------~~li~~i~~~~-~l~~i~itTNG~ll~~~~~~L~~aGl~~v~I 120 (329)
T PRK13361 53 LAQAFTELGVRKIRLTG--GEPLVRRGC---------DQLVARLGKLP-GLEELSLTTNGSRLARFAAELADAGLKRLNI 120 (329)
T ss_pred HHHHHHHCCCCEEEEEC--cCCCccccH---------HHHHHHHHhCC-CCceEEEEeChhHHHHHHHHHHHcCCCeEEE
Confidence 33444567888887743 2 2565532 24566666653 33 34556666532 467888999998754
No 235
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=74.95 E-value=1e+02 Score=31.46 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=72.3
Q ss_pred HHhCCCEEEEec-----CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE-EEEecCCcc----------------
Q 015201 245 VESGAHCIQIFD-----SWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPI-VLYINGNGG---------------- 300 (411)
Q Consensus 245 ~e~G~d~i~i~D-----~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~-~~H~CG~~~---------------- 300 (411)
.+.+...++.+. ..|| =|.|..|++|+.. +.+.+ |.|. -+-.||++-
T Consensus 38 ~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~----iA~~~-----gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~ 108 (426)
T PRK15458 38 LANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQ----LADSL-----NFPQEALILGGDHLGPNRWQNLPAAQAMAN 108 (426)
T ss_pred hhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHH----HHHHc-----CCChhhEEeecCCCCCccccCCCHHHHHHH
Confidence 445555554432 2344 5999999998764 55544 4443 445666631
Q ss_pred ---cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHH---Hh-----CC--CCeE
Q 015201 301 ---FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVK---CA-----GS--RGHI 367 (411)
Q Consensus 301 ---~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~---~~-----~~--~gfI 367 (411)
.+....+.|++-|++|..|+ ..| ||.- -+.+.|.+.+.++++ .. +. -.||
T Consensus 109 A~~li~ayV~AGF~kIHLD~Sm~-------------cag--dp~p--L~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYv 171 (426)
T PRK15458 109 ADDLIKSYVAAGFKKIHLDCSMS-------------CAD--DPIP--LTDEIVAERAARLAKIAEETCREHFGESDLVYV 171 (426)
T ss_pred HHHHHHHHHHcCCceEEecCCCC-------------CCC--CCCC--CChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 12334467888888888776 112 2211 244556666665555 21 21 4699
Q ss_pred EeCCCCCCCC----------CcHHHHHHHHHHHHh
Q 015201 368 LNLGHGVLVG----------TPEEAVAHFFEVGKS 392 (411)
Q Consensus 368 ls~gc~i~~~----------tp~Eni~a~~~a~~~ 392 (411)
++|---+|.| |++|..++.+++-++
T Consensus 172 IGTEvP~pGGa~~~~~~~~vTs~e~~~~Ti~~h~~ 206 (426)
T PRK15458 172 IGTEVPVPGGAHETLSELAVTTPDAARATLEAHRH 206 (426)
T ss_pred eccccCCCCchhhhccccCCCCHHHHHHHHHHHHH
Confidence 9876656665 788989888887744
No 236
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=74.95 E-value=42 Score=32.12 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHhcCCCcEEEc
Q 015201 275 IREIVSLVRTKCPETPIVLYINGNGG------FLERMKGTGVDVIGL 315 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~e~g~d~l~~ 315 (411)
+.+.++.++..+.+..+-+-.+|+.. ++..+.+.|+|++-+
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iEL 50 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILEL 50 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 44556666655434567888899842 245566789999954
No 237
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=74.78 E-value=11 Score=33.76 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=64.6
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC-CcEEEcCCCCCHHHHHH
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG-VDVIGLDWTVDMADGRK 326 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g-~d~l~~d~~~di~~~~~ 326 (411)
...|.+.. --.++.|+ +. ++++.+++. |..+.+.+.|... .++.+.+.| ++.++++-..+-....+
T Consensus 63 ~~~i~~sG-GEPll~~~-l~--------~li~~~~~~--g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~ 130 (191)
T TIGR02495 63 IDGVVITG-GEPTLQAG-LP--------DFLRKVREL--GFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPE 130 (191)
T ss_pred CCeEEEEC-CcccCcHh-HH--------HHHHHHHHC--CCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHH
Confidence 45555542 11266665 33 345555555 5567888888755 577788888 57766644323222333
Q ss_pred HhCCCeeEEccCCcCccCCCH-HHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHHHHHHHHHHhcCCCCC
Q 015201 327 RLGNDISVQGNVDPACLFSPL-PALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L~gt~-eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
.+|. + ++. +++.+.++.+.+ .+- .+.+. ..+ +...+.+.+..+.+..++.+.+.+
T Consensus 131 ~~g~--------~-----~~~~~~~~~~i~~l~~-~gi-~~~i~--~~v~~~~~~~~ei~~~~~~l~~~~~~~~ 187 (191)
T TIGR02495 131 LYGL--------E-----KNGSNNILKSLEILLR-SGI-PFELR--TTVHRGFLDEEDLAEIATRIKENGTYVL 187 (191)
T ss_pred HHCC--------C-----CchHHHHHHHHHHHHH-cCC-CEEEE--EEEeCCCCCHHHHHHHHHHhccCCcEEe
Confidence 3331 1 111 456665554433 221 12222 222 334456789999999988874433
No 238
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.72 E-value=6.2 Score=38.02 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
+.++..+++|+|+|. .|. |||++-++ +++.+++.+.+..+.+-..|+++ .++.+.++|+|+++..
T Consensus 193 eea~~a~~agaDiI~-LDn----~~~e~l~~--------~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 193 EDALKAAKAGADIIM-LDN----MTPEEIRE--------VIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred HHHHHHHHcCcCEEE-ECC----CCHHHHHH--------HHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 344556788999874 344 47776544 45556554211235677888887 5899999999999875
Q ss_pred C
Q 015201 317 W 317 (411)
Q Consensus 317 ~ 317 (411)
.
T Consensus 260 a 260 (278)
T PRK08385 260 A 260 (278)
T ss_pred h
Confidence 3
No 239
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=74.65 E-value=54 Score=32.18 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 243 YQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPET-PIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 243 ~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~-~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+.+.|+..|.+.. | .++.|+ +.++++.+++.. ++ .+.+.+-|... .++.+.+.|++.+++
T Consensus 54 ~~~~~gv~~V~ltG--GEPll~~~---------l~~li~~i~~~~-gi~~v~itTNG~ll~~~~~~L~~~gl~~v~I 118 (334)
T TIGR02666 54 AFVGLGVRKVRLTG--GEPLLRKD---------LVELVARLAALP-GIEDIALTTNGLLLARHAKDLKEAGLKRVNV 118 (334)
T ss_pred HHHHCCCCEEEEEC--ccccccCC---------HHHHHHHHHhcC-CCCeEEEEeCchhHHHHHHHHHHcCCCeEEE
Confidence 44567888876643 2 255543 334555555532 44 46667767643 467888999987753
No 240
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.59 E-value=88 Score=30.51 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
-.++.++...++|+|++.+.-+.-...++ +=+.-|++.+++... +.|++++..-
T Consensus 91 ~ai~~a~~A~~~Gad~vlv~~P~y~~~~~----~~l~~yf~~va~a~~----~lPv~iYn~P 144 (309)
T cd00952 91 DTIARTRALLDLGADGTMLGRPMWLPLDV----DTAVQFYRDVAEAVP----EMAIAIYANP 144 (309)
T ss_pred HHHHHHHHHHHhCCCEEEECCCcCCCCCH----HHHHHHHHHHHHhCC----CCcEEEEcCc
Confidence 34566677778899998776664322333 556777788887642 3677666553
No 241
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=74.41 E-value=40 Score=31.30 Aligned_cols=80 Identities=6% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHhC-CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 239 DYIIYQVESG-AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 239 ~~~~~~~e~G-~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
+.++..++.| ++.|++-+.. ++.+.+.+. .+++.+.++++ |++++++. .++.-.+.|.|++|+..
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~---l~~~~~~~~----a~~l~~l~~~~--gv~liINd-----~~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYG---LDEATFQKQ----AEKLVPVIQEA--GAAALIAG-----DSRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCC---CCHHHHHHH----HHHHHHHHHHh--CCEEEEeC-----HHHHHHHhCCCEEEECc
Confidence 4556778889 6999886543 456555443 45566666766 67877763 46767788999999864
Q ss_pred -CCCHHHHHHHhCCCe
Q 015201 318 -TVDMADGRKRLGNDI 332 (411)
Q Consensus 318 -~~di~~~~~~~g~~~ 332 (411)
..++.++++++|.+.
T Consensus 96 ~d~~~~~~r~~~~~~~ 111 (221)
T PRK06512 96 NLAALAEAIEKHAPKM 111 (221)
T ss_pred cccCHHHHHHhcCCCC
Confidence 357888998887544
No 242
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=74.39 E-value=15 Score=35.63 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++.+ +.|+|.+.++=... |.. .| ++-+..+++|.+.+ ++|+++|
T Consensus 153 ~~yT~peeA~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~~p----~L~~~~L~~I~~~~-----~iPLVLH 209 (285)
T PRK07709 153 VIYADPAECKHLVE--------------ATGIDCLAPALGSVHGPYKGEP----NLGFAEMEQVRDFT-----GVPLVLH 209 (285)
T ss_pred ccCCCHHHHHHHHH--------------HhCCCEEEEeecccccCcCCCC----ccCHHHHHHHHHHH-----CCCEEEe
Confidence 56899987766654 34888766543221 221 23 22233444444433 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-+-... .+...++.|+.-+|++...- ...+++.+... -..+||..+ ..-.+.+++.+++.|+.++.
T Consensus 210 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs 281 (285)
T PRK07709 210 GGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKD---QEVYDPRKFIGPGRDAIKATVIGKIREFGS 281 (285)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875443 47778889999999975321 22334444321 123676544 35567799999999998864
No 243
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=74.22 E-value=84 Score=31.57 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
.....++++...+++|+..++++.+.++. +-+++.++...++|
T Consensus 181 ~~~v~~av~~a~~~TG~~~~y~~nit~~~-------------------------------------~e~i~~a~~a~~~G 223 (367)
T cd08205 181 VRACMEAVRRANEETGRKTLYAPNITGDP-------------------------------------DELRRRADRAVEAG 223 (367)
T ss_pred HHHHHHHHHHHHHhhCCcceEEEEcCCCH-------------------------------------HHHHHHHHHHHHcC
Confidence 55666777777788777666666554421 22234556667889
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-----------cc-cH-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-----------GG-FL-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-----------~~-~l-~~~~e~g~d~l~~ 315 (411)
+|++.+.-++.++-+.+.- .+ . .+.|+..|-.+. .. .+ ....-.|+|.+++
T Consensus 224 ad~vmv~~~~~g~~~~~~l-----------~~----~-~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~ 287 (367)
T cd08205 224 ANALLINPNLVGLDALRAL-----------AE----D-PDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIF 287 (367)
T ss_pred CCEEEEecccccccHHHHH-----------Hh----c-CCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCcccc
Confidence 9998665555554443222 11 1 156788888772 11 13 2344478998865
Q ss_pred CC---C--CCHHHHHHHhCCCeeEEccCCcCcc--C--CCHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcHHHHH
Q 015201 316 DW---T--VDMADGRKRLGNDISVQGNVDPACL--F--SPLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPEEAVA 384 (411)
Q Consensus 316 d~---~--~di~~~~~~~g~~~~l~G~vd~~~L--~--gt~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~Eni~ 384 (411)
.. . .+..++.+....-..=++++.+..- - .++ ..+.++++.+++ .+|+..|.++ .|+-+-+..+
T Consensus 288 ~~~~gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~----~~v~~l~~~~G~-dv~~~~GGgi~gHp~g~~ag~~ 362 (367)
T cd08205 288 PGPGGRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHP----GRVPELYRDYGP-DVILLAGGGILGHPDGAAAGVR 362 (367)
T ss_pred CCCccCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCH----HHHHHHHHHhCC-cEEEEcCchhcCCCCChHHHHH
Confidence 32 2 2333333322100112566666542 2 233 445667777764 6888888887 4566778888
Q ss_pred HHHH
Q 015201 385 HFFE 388 (411)
Q Consensus 385 a~~~ 388 (411)
||.+
T Consensus 363 a~r~ 366 (367)
T cd08205 363 AFRQ 366 (367)
T ss_pred HHhc
Confidence 8765
No 244
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=74.10 E-value=29 Score=34.39 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH---HHHH------HHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM---WEQW------SEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~---f~ef------~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. -.+| =.-+..++++.+++.. +.|+.+-+.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis 215 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRIS 215 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEec
Confidence 333444445566777889999998875433 3677632 1111 1345567777777765 457777665
Q ss_pred C-------Cc-c----cHhHHhcCCCcEEEcCC
Q 015201 297 G-------NG-G----FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 297 G-------~~-~----~l~~~~e~g~d~l~~d~ 317 (411)
. .. . ++..+.+.|+|.+++..
T Consensus 216 ~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 216 ASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3 22 1 12556677999997743
No 245
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=74.03 E-value=61 Score=30.87 Aligned_cols=123 Identities=10% Similarity=0.088 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC--CCCHH--HHHHHhCCCeeEEcc
Q 015201 262 LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW--TVDMA--DGRKRLGNDISVQGN 337 (411)
Q Consensus 262 iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~--~~di~--~~~~~~g~~~~l~G~ 337 (411)
-||.-|+.+...-++.+.+..++. |++++- ..-+...++.+.+. +|++-+.. ..+.. +.....|..+.+--|
T Consensus 65 tsp~s~~g~g~~gl~~l~~~~~~~--Gl~~~t-~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 65 TSPYSFQGLGEEGLKLLRRAADEH--GLPVVT-EVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred CCCccccccHHHHHHHHHHHHHHh--CCCEEE-eeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCC
Confidence 344456776677777777777776 676543 22233356777777 88886532 22333 333333432222211
Q ss_pred CCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CC-CC-CCCCcHHHHHHHHHHHHhcC
Q 015201 338 VDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GH-GV-LVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 338 vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc-~i-~~~tp~Eni~a~~~a~~~yg 394 (411)
..+|.+|+.+.+..+.+. |...++|.- |. +. |..-..-|++++....+.|+
T Consensus 141 -----~~~t~~e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~ 194 (260)
T TIGR01361 141 -----MGNTIEEWLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH 194 (260)
T ss_pred -----CCCCHHHHHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC
Confidence 235999999998888754 444566632 22 22 33233346666665555555
No 246
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=73.84 E-value=1e+02 Score=30.79 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHH-----------HHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG-GQLPPHMW-----------EQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG- 300 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f-----------~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~- 300 (411)
+.+...+++..+.+.++|.-.-... .+++...+ -..+.++.+.+.+.. .+|+.+|.+ |...
T Consensus 27 e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~-----~VPValHLDHg~~~~ 101 (345)
T cd00946 27 STINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHY-----GVPVVLHTDHCAKKL 101 (345)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC-----CCCEEEECCCCCCcc
Confidence 4455666777778888875333221 23333211 224566666655544 589999997 3331
Q ss_pred c----------HhHHh---cCCCcEEEcCCC-C----CHHHHHHHh----CCCeeE------EccC-Cc--------Ccc
Q 015201 301 F----------LERMK---GTGVDVIGLDWT-V----DMADGRKRL----GNDISV------QGNV-DP--------ACL 343 (411)
Q Consensus 301 ~----------l~~~~---e~g~d~l~~d~~-~----di~~~~~~~----g~~~~l------~G~v-d~--------~~L 343 (411)
. .+.+. +.|++.+.+|.. . ++...|+.. .-.+.+ +|+. |- ..+
T Consensus 102 ~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~ 181 (345)
T cd00946 102 LPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAEL 181 (345)
T ss_pred chhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCccccccccccc
Confidence 1 22222 457888877642 2 333333332 001222 2222 11 124
Q ss_pred CCCHHHHHHHHHHHHHHhC-C-CCeEEeCCCCCCC----CCcHHHHHHHHHH
Q 015201 344 FSPLPALTDEIQRVVKCAG-S-RGHILNLGHGVLV----GTPEEAVAHFFEV 389 (411)
Q Consensus 344 ~gt~eeV~~ev~~~i~~~~-~-~gfIls~gc~i~~----~tp~Eni~a~~~a 389 (411)
+-+|||..+-+++.-...+ + =-.-+++-|++-. ...+|.++.+.+.
T Consensus 182 yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~ 233 (345)
T cd00946 182 YTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDY 233 (345)
T ss_pred CCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHH
Confidence 5689999888887522111 0 1233555677654 3466777766554
No 247
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=73.37 E-value=1.2e+02 Score=31.86 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=34.8
Q ss_pred HhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCC-c--c--cHhHHhcCCCcEEEc
Q 015201 246 ESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGN-G--G--FLERMKGTGVDVIGL 315 (411)
Q Consensus 246 e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~-~--~--~l~~~~e~g~d~l~~ 315 (411)
+.|+..+.+.|+.-+ ++++. .+++++.+.+.+ ...+. ..+..+ . + .++.+++.|+..+++
T Consensus 237 ~~gv~~~~~~Dd~f~-~~~~~--------~~~l~~~l~~~~-~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~i 303 (497)
T TIGR02026 237 THGVGFFILADEEPT-INRKK--------FQEFCEEIIARN-PISVTWGINTRVTDIVRDADILHLYRRAGLVHISL 303 (497)
T ss_pred HcCCCEEEEEecccc-cCHHH--------HHHHHHHHHhcC-CCCeEEEEecccccccCCHHHHHHHHHhCCcEEEE
Confidence 468888888876543 45543 356677776652 12222 222222 1 2 467888899988765
No 248
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=73.31 E-value=75 Score=32.06 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCC-C----CCCCHHH---HHHH------HHHHHHHHHHHHHhhCC-CCCEEEE
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSW-G----GQLPPHM---WEQW------SEPYIREIVSLVRTKCP-ETPIVLY 294 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~-~----~~iSp~~---f~ef------~~Py~k~i~~~i~~~~~-g~~~~~H 294 (411)
++.+.+...+.++...++|.|+|.+.-.- + .|+||.. =+|| =.-+..++++.+++..| +.++.+.
T Consensus 145 I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 145 VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 33444444555667778999999887533 3 3777632 1111 13455677777777653 4567776
Q ss_pred ec
Q 015201 295 IN 296 (411)
Q Consensus 295 ~C 296 (411)
++
T Consensus 225 i~ 226 (382)
T cd02931 225 YS 226 (382)
T ss_pred Ee
Confidence 65
No 249
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=73.28 E-value=55 Score=33.81 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=64.3
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCC-cc--cHhHHhcCCCcEEEcCCC-CC
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP---ETPIVLYINGN-GG--FLERMKGTGVDVIGLDWT-VD 320 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~---g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~d~~-~d 320 (411)
+++.|.++....++++++..+++ ++.+++..+ +..+.+=+-+. .+ .++.+++.|++.+++.-. .+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~l--------l~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~ 173 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRL--------MALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFD 173 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 46677776666678888876654 444443311 22222222232 22 578899999999987432 23
Q ss_pred HHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 321 MADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 321 i~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
- +..+.++.. .+.+++.+.++.+-+.+-+ .+-+..-.++| +-..|.++..++.+.+.+.
T Consensus 174 ~-~~L~~l~r~-------------~~~~~~~~ai~~l~~~G~~-~v~~dli~GlP-gqt~e~~~~~l~~~~~l~~ 232 (453)
T PRK09249 174 P-EVQKAVNRI-------------QPFEFTFALVEAARELGFT-SINIDLIYGLP-KQTPESFARTLEKVLELRP 232 (453)
T ss_pred H-HHHHHhCCC-------------CCHHHHHHHHHHHHHcCCC-cEEEEEEccCC-CCCHHHHHHHHHHHHhcCC
Confidence 2 333334421 2566666555544443211 11111112344 3346667777777776653
No 250
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=73.21 E-value=22 Score=35.70 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d 311 (411)
++.+.++.+.++|+|.|.+.|..| .+.|+.+.+++ +.+++.. ++++-+|.+-+... + .. -.+.|++
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~li--------~~l~~~~-~~~l~~H~Hnd~GlA~AN~laA~~aGa~ 211 (363)
T TIGR02090 142 FLIKVFKRAEEAGADRINIADTVG-VLTPQKMEELI--------KKLKENV-KLPISVHCHNDFGLATANSIAGVKAGAE 211 (363)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCC-ccCHHHHHHHH--------HHHhccc-CceEEEEecCCCChHHHHHHHHHHCCCC
Confidence 334445566788999999988875 58887765544 3444443 36788999877652 2 22 2356988
Q ss_pred EEE
Q 015201 312 VIG 314 (411)
Q Consensus 312 ~l~ 314 (411)
.++
T Consensus 212 ~vd 214 (363)
T TIGR02090 212 QVH 214 (363)
T ss_pred EEE
Confidence 874
No 251
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=73.15 E-value=67 Score=32.17 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=37.0
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC---CCCCEEEEec-CCcc--cHhHHhcCCCcEEEc
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC---PETPIVLYIN-GNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~---~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~~ 315 (411)
.++.|++++...++++++..+++ ++.+++.. ++..+.+-+- +..+ .++.+.+.|++-+++
T Consensus 59 ~i~~i~~GGGTPs~l~~~~l~~l--------l~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvsl 124 (375)
T PRK05628 59 PVSTVFVGGGTPSLLGAEGLARV--------LDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSL 124 (375)
T ss_pred ceeEEEeCCCccccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEE
Confidence 36788888888889999776654 44444432 1111221111 2223 578899999999876
No 252
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=72.79 E-value=69 Score=30.96 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc-ccHhHHhcCCCcEE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG-GFLERMKGTGVDVI 313 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~-~~l~~~~e~g~d~l 313 (411)
.+...+++..+.++.+|.- +|+...+-.-.+.+..++..+.+.. .+|+.+|.+ |.. ..+..-++.|++.+
T Consensus 28 ~~~avi~AAee~~sPvIlq-------~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHLDHg~~~e~i~~ai~~GFtSV 99 (282)
T TIGR01858 28 TIQAVVETAAEMRSPVILA-------GTPGTFKHAGTEYIVALCSAASTTY-NMPLALHLDHHESLDDIRQKVHAGVRSA 99 (282)
T ss_pred HHHHHHHHHHHhCCCEEEE-------eCccHHhhCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 3344555667778887743 2332222222233333444333332 689999997 433 25777888899999
Q ss_pred EcCCC-CC----HHHHH------HHhCCCeeE------EccCCcC-------ccCCCHHHHHHHHHHH-HHHhCCCCeEE
Q 015201 314 GLDWT-VD----MADGR------KRLGNDISV------QGNVDPA-------CLFSPLPALTDEIQRV-VKCAGSRGHIL 368 (411)
Q Consensus 314 ~~d~~-~d----i~~~~------~~~g~~~~l------~G~vd~~-------~L~gt~eeV~~ev~~~-i~~~~~~gfIl 368 (411)
.+|.. .+ +...+ ..+| +.+ .|+..-. .++-+||++.+.+++. ++.+ -.-+
T Consensus 100 M~DgS~lp~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L---Avai 174 (282)
T TIGR01858 100 MIDGSHFPFAQNVKLVKEVVDFCHRQD--CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSL---AVAI 174 (282)
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEE---eccc
Confidence 88742 22 32222 2233 222 2222111 1345788777776633 1221 3335
Q ss_pred eCCCCCCC---CCcHHHHHHHHHHH
Q 015201 369 NLGHGVLV---GTPEEAVAHFFEVG 390 (411)
Q Consensus 369 s~gc~i~~---~tp~Eni~a~~~a~ 390 (411)
++.|++.. ....|.++.+.+.+
T Consensus 175 Gt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 175 GTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred CccccCcCCCCccCHHHHHHHHHHh
Confidence 55677754 45666666665544
No 253
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=72.74 E-value=47 Score=31.44 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe----cCCcc-cHhHHhcCCCcE
Q 015201 239 DYIIYQVESGAHCIQIFD-SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI----NGNGG-FLERMKGTGVDV 312 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D-~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~----CG~~~-~l~~~~e~g~d~ 312 (411)
+-++.+.+.|+|+|.++- +-.+-+.. +..+++++..+ +.++.+|- |-+.. -++.++++|++.
T Consensus 77 ~di~~~~~~GadGvV~G~L~~dg~vD~--------~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~al~~l~~lG~~r 144 (248)
T PRK11572 77 EDIATVRELGFPGLVTGVLDVDGHVDM--------PRMRKIMAAAG----PLAVTFHRAFDMCANPLNALKQLADLGVAR 144 (248)
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcCH--------HHHHHHHHHhc----CCceEEechhhccCCHHHHHHHHHHcCCCE
Confidence 335566788999997653 11223443 45667777774 57889986 33433 489999999987
Q ss_pred EEcC-CC-------CCHHHHHHHhCCCe-eEEccCCcC
Q 015201 313 IGLD-WT-------VDMADGRKRLGNDI-SVQGNVDPA 341 (411)
Q Consensus 313 l~~d-~~-------~di~~~~~~~g~~~-~l~G~vd~~ 341 (411)
+-.. .. ..+.++.+..++++ ..-|||.+.
T Consensus 145 ILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~ 182 (248)
T PRK11572 145 ILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLS 182 (248)
T ss_pred EECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 6321 11 12445555556553 334667663
No 254
>PRK09389 (R)-citramalate synthase; Provisional
Probab=72.52 E-value=21 Score=37.28 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H---hHHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L---ERMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l---~~~~e~g~d 311 (411)
++.+.+++..++|++.|.+.|..|. +.|..+.+++ ..+++.. ++++-+|.+-+... + -.-.+.|++
T Consensus 144 ~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~~lv--------~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~ 213 (488)
T PRK09389 144 FLKELYKAGIEAGADRICFCDTVGI-LTPEKTYELF--------KRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGAD 213 (488)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCC-cCHHHHHHHH--------HHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCC
Confidence 3344445566789999988887775 7888877653 3333332 46788999877652 2 223367888
Q ss_pred EEE
Q 015201 312 VIG 314 (411)
Q Consensus 312 ~l~ 314 (411)
.++
T Consensus 214 ~Vd 216 (488)
T PRK09389 214 QVH 216 (488)
T ss_pred EEE
Confidence 874
No 255
>PLN02417 dihydrodipicolinate synthase
Probab=72.47 E-value=93 Score=29.83 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g 309 (411)
.++.++...++|+|++.+.-+.-.-.|+ +-+.-|++++.+. . |++++.. |.. . .+..+.+.+
T Consensus 85 ~i~~a~~a~~~Gadav~~~~P~y~~~~~----~~i~~~f~~va~~------~-pi~lYn~P~~tg~~l~~~~l~~l~~~p 153 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHINPYYGKTSQ----EGLIKHFETVLDM------G-PTIIYNVPGRTGQDIPPEVIFKIAQHP 153 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCccCCCCH----HHHHHHHHHHHhh------C-CEEEEEChhHhCcCCCHHHHHHHhcCC
Confidence 3456667778888888776554322333 4455566666652 2 5655533 322 1 234444443
Q ss_pred CcEEEc-CCCCCHHHHHHHhCCCeeEEccCCc
Q 015201 310 VDVIGL-DWTVDMADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 310 ~d~l~~-d~~~di~~~~~~~g~~~~l~G~vd~ 340 (411)
+++.+ +...| ....+..++++.++.|-|.
T Consensus 154 -ni~giKdss~~-~~~~~~~~~~~~v~~G~d~ 183 (280)
T PLN02417 154 -NFAGVKECTGN-DRVKQYTEKGILLWSGNDD 183 (280)
T ss_pred -CEEEEEeCCCc-HHHHHHhcCCeEEEEcccH
Confidence 44444 33345 5555555556666666554
No 256
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.18 E-value=19 Score=36.79 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCC---CHHHHHHHhCCCeeEEc
Q 015201 260 GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTV---DMADGRKRLGNDISVQG 336 (411)
Q Consensus 260 ~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~---di~~~~~~~g~~~~l~G 336 (411)
..+|+++- +++++..+++ |+|+-+|..+.. -+...++.|++.+.-.... +...++++ + .|
T Consensus 215 ~~fs~~e~--------~~~l~~a~~~--g~~v~~HA~~~~-g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~-~-----~g 277 (406)
T COG1228 215 GQFSPEEI--------RAVLAAALKA--GIPVKAHAHGAD-GIKLAIRLGAKSAEHGTLLDHETAALLAEK-G-----AG 277 (406)
T ss_pred cccCHHHH--------HHHHHHHHHC--CCceEEEecccc-hHHHHHHhCcceehhhhhcCHhHHHHHhhc-c-----CC
Confidence 35666543 7788899887 799999998876 4566677787766322222 23333332 1 33
Q ss_pred c-CCcCccCCCHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCCC
Q 015201 337 N-VDPACLFSPLPALTDEIQRVVKCAGS--RGHILNLGHGVLVG 377 (411)
Q Consensus 337 ~-vd~~~L~gt~eeV~~ev~~~i~~~~~--~gfIls~gc~i~~~ 377 (411)
- + |.++.++.-++++..++-++.+.+ -.+.++++|+..+.
T Consensus 278 ~~~-~~l~p~~~~~l~e~~~~~~~~l~~~GV~vai~TD~~~~~~ 320 (406)
T COG1228 278 TPV-PVLLPRTKFELRELDYKPARKLIDAGVKVAIGTDHNPGTS 320 (406)
T ss_pred Ccc-ccccchhhhhhhcccchhHHHHHHCCCEEEEEcCCCCCch
Confidence 2 4 444556666666665555554443 36777777776553
No 257
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=72.16 E-value=64 Score=31.16 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~ 314 (411)
...+++..+.+..+|.-..+.. ...+. +++.++.+...+ +. .+|+.+|.+-..+ .+....+.|++.+.
T Consensus 32 ~avi~aAe~~~~Pvii~~~~~~~~~~~~----~~~~~~~~~~a~---~~--~vpv~lHlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 32 MGAIKAAEELNSPIILQIAEVRLNHSPL----HLIGPLMVAAAK---QA--KVPVAVHFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred HHHHHHHHHhCCCEEEEcCcchhccCCh----HHHHHHHHHHHH---HC--CCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 3445566677888775332222 12222 344455554443 33 5899999974433 57888889999998
Q ss_pred cCC
Q 015201 315 LDW 317 (411)
Q Consensus 315 ~d~ 317 (411)
+|.
T Consensus 103 ~d~ 105 (281)
T PRK06806 103 FDG 105 (281)
T ss_pred EcC
Confidence 864
No 258
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=72.04 E-value=75 Score=31.33 Aligned_cols=124 Identities=21% Similarity=0.358 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHH-----------
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIA----------- 238 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~----------- 238 (411)
....++.+++.+ .+-+. +=-.+++|-.....--.| ..|.++||++.++++.+.+..-
T Consensus 79 ~~l~eaA~~~~~-~g~~~-IdlN~GCP~~~V~~~g~G----------a~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG 146 (323)
T COG0042 79 ELLAEAAKIAEE-LGADI-IDLNCGCPSPKVVKGGAG----------AALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG 146 (323)
T ss_pred HHHHHHHHHHHh-cCCCE-EeeeCCCChHHhcCCCcc----------hhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc
Confidence 345566665544 34111 224677886655432111 3788999999999999988872
Q ss_pred ---------HHHHHHHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---c-Hh
Q 015201 239 ---------DYIIYQVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---F-LE 303 (411)
Q Consensus 239 ---------~~~~~~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~-l~ 303 (411)
++++...++|++.+.++--.. ..-+|..|+ +++++-+.+. .+|++ .-|++. . .+
T Consensus 147 ~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~-----~I~~vk~~~~----~ipvi--~NGdI~s~~~a~~ 215 (323)
T COG0042 147 WDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWD-----YIKELKEAVP----SIPVI--ANGDIKSLEDAKE 215 (323)
T ss_pred cCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHH-----HHHHHHHhCC----CCeEE--eCCCcCCHHHHHH
Confidence 356666788999999887543 355664443 3444444442 34544 446543 2 35
Q ss_pred HHhcCCCcEEEcC
Q 015201 304 RMKGTGVDVIGLD 316 (411)
Q Consensus 304 ~~~e~g~d~l~~d 316 (411)
.+..+|+|++.+.
T Consensus 216 ~l~~tg~DgVMig 228 (323)
T COG0042 216 MLEYTGADGVMIG 228 (323)
T ss_pred HHHhhCCCEEEEc
Confidence 5666899998774
No 259
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.91 E-value=96 Score=30.61 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHHH---HHH------HHHHHHHHHHHHHhhCC-CCCEE
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHMW---EQW------SEPYIREIVSLVRTKCP-ETPIV 292 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~f---~ef------~~Py~k~i~~~i~~~~~-g~~~~ 292 (411)
.+-++.+.+...+.++...++|.|+|.+.-.-+ .|+||..= .|| =.-+..++++.+++..| +.++.
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 333555555555667778899999998764322 26666320 112 13344466666666543 46677
Q ss_pred EEec-------CCc-----ccHhHHhcCCCcEEEcC
Q 015201 293 LYIN-------GNG-----GFLERMKGTGVDVIGLD 316 (411)
Q Consensus 293 ~H~C-------G~~-----~~l~~~~e~g~d~l~~d 316 (411)
+-.. |.. .+++.+.+.|+|.+++.
T Consensus 221 vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 221 IKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred EEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 6554 322 12366777899998853
No 260
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.81 E-value=68 Score=30.92 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
-.++.++...+.|+|++.+.-+.-.-.|+ +-+.-|++++++.. +.|++++..
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~P~y~~~~~----~~l~~~f~~va~a~-----~lPv~iYn~ 138 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVTPFYYPFSF----EEICDYYREIIDSA-----DNPMIVYNI 138 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeC
Confidence 34556667778899998776654322332 45677888888765 457777754
No 261
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=71.73 E-value=23 Score=34.44 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCcc--cHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGG--FLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~--~l~~~~e~g~ 310 (411)
+-.++.++++.++|||+|++. +.-|+++.+ ++.+.+. .|+. +..-|... .++.+.++|+
T Consensus 165 deaI~Ra~aY~eAGAD~ifi~----~~~~~~ei~--------~~~~~~~-----~P~~~nv~~~~~~p~~s~~eL~~lG~ 227 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFLE----AMLDVEEMK--------RVRDEID-----APLLANMVEGGKTPWLTTKELESIGY 227 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEec----CCCCHHHHH--------HHHHhcC-----CCeeEEEEecCCCCCCCHHHHHHcCC
Confidence 445667889999999999773 356776644 4444442 3552 22224443 3788999999
Q ss_pred cEEEcC
Q 015201 311 DVIGLD 316 (411)
Q Consensus 311 d~l~~d 316 (411)
+.+++.
T Consensus 228 ~~v~~~ 233 (294)
T TIGR02319 228 NLAIYP 233 (294)
T ss_pred cEEEEc
Confidence 998764
No 262
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=71.73 E-value=22 Score=33.43 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVI 313 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l 313 (411)
+-.++.++++.++|||+|++ -+..+.++.+ ++.+.+ +.|+.+.. +... .++++.++|+..+
T Consensus 155 deaI~R~~aY~eAGAD~ifi----~~~~~~~~i~--------~~~~~~-----~~Pl~v~~-~~~~~~~~eL~~lGv~~v 216 (238)
T PF13714_consen 155 DEAIERAKAYAEAGADMIFI----PGLQSEEEIE--------RIVKAV-----DGPLNVNP-GPGTLSAEELAELGVKRV 216 (238)
T ss_dssp HHHHHHHHHHHHTT-SEEEE----TTSSSHHHHH--------HHHHHH-----SSEEEEET-TSSSS-HHHHHHTTESEE
T ss_pred HHHHHHHHHHHHcCCCEEEe----CCCCCHHHHH--------HHHHhc-----CCCEEEEc-CCCCCCHHHHHHCCCcEE
Confidence 34456678899999999875 2335555543 445555 25776666 4323 5899999999999
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
++..
T Consensus 217 ~~~~ 220 (238)
T PF13714_consen 217 SYGN 220 (238)
T ss_dssp EETS
T ss_pred EEcH
Confidence 8754
No 263
>PRK09875 putative hydrolase; Provisional
Probab=71.59 E-value=59 Score=31.57 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=85.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH-hCCCEEEEec---CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRT-LLSHLTQAIADYIIYQVE-SGAHCIQIFD---SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~-ll~~~~d~~~~~~~~~~e-~G~d~i~i~D---~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.++. -.+.+++.+++-+...++ .|+..-++.. ++ +.++|..- .-++..+.+.++. |.|++.|...
T Consensus 90 p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~-~~it~~E~-----kvl~Aaa~a~~~T--G~pi~~Ht~~ 161 (292)
T PRK09875 90 PEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSE-GKITPLEE-----KVFIAAALAHNQT--GRPISTHTSF 161 (292)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCC-CCCCHHHH-----HHHHHHHHHHHHH--CCcEEEcCCC
Confidence 444443 245555555554444443 2322222322 23 23666543 3334444455554 7999999764
Q ss_pred C-cc--cHhHHhcCCC--cEE---EcCCCCCHHHHHHHhCCCeeEEccCCcCcc--CCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 298 N-GG--FLERMKGTGV--DVI---GLDWTVDMADGRKRLGNDISVQGNVDPACL--FSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 298 ~-~~--~l~~~~e~g~--d~l---~~d~~~di~~~~~~~g~~~~l~G~vd~~~L--~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
. .. .++.+.+.|+ +-+ |.|...|+...++.... -+..+ +|.... .-+.++..+.++.+++.+.....+
T Consensus 162 ~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~-G~~l~-fD~~g~~~~~pd~~r~~~i~~L~~~Gy~dril 239 (292)
T PRK09875 162 STMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDL-GAYVQ-FDTIGKNSYYPDEKRIAMLHALRDRGLLNRVM 239 (292)
T ss_pred ccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHc-CCEEE-eccCCCcccCCHHHHHHHHHHHHhcCCCCeEE
Confidence 3 22 3688889998 333 45666788888887532 12222 333211 123455666666676665456888
Q ss_pred EeCCCCCCCC-Cc------HHHHHHHHHHHHhcC
Q 015201 368 LNLGHGVLVG-TP------EEAVAHFFEVGKSMK 394 (411)
Q Consensus 368 ls~gc~i~~~-tp------~Eni~a~~~a~~~yg 394 (411)
||.+=+-... .+ ..-+..++-..++.|
T Consensus 240 LS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~G 273 (292)
T PRK09875 240 LSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSG 273 (292)
T ss_pred EeCCCCCcccccccCCCChhHHHHHHHHHHHHcC
Confidence 8766432211 11 233566666666655
No 264
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=71.51 E-value=85 Score=28.94 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCC-CCHHHHHHHhCCCeeEEccCCcCccCCCHHH
Q 015201 273 PYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWT-VDMADGRKRLGNDISVQGNVDPACLFSPLPA 349 (411)
Q Consensus 273 Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~-~di~~~~~~~g~~~~l~G~vd~~~L~gt~ee 349 (411)
++...+++.+|+. |+.+.+++||... .++.+.+. +|.+.+|-. +|...-++..| ++.+.
T Consensus 54 ~fl~~l~~~~k~~--gi~~~leTnG~~~~~~~~~l~~~-~D~~l~DiK~~d~~~~~~~tG---------------~~~~~ 115 (213)
T PRK10076 54 EFATRFLQRLRLW--GVSCAIETAGDAPASKLLPLAKL-CDEVLFDLKIMDATQARDVVK---------------MNLPR 115 (213)
T ss_pred HHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHh-cCEEEEeeccCCHHHHHHHHC---------------CCHHH
Confidence 3445566677777 6889999999875 46666654 677776643 35444444333 22355
Q ss_pred HHHHHHHHHHHhCCCCeEEeCCCCCCC-CCcHHHHHHHHHHHHhcC
Q 015201 350 LTDEIQRVVKCAGSRGHILNLGHGVLV-GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 350 V~~ev~~~i~~~~~~gfIls~gc~i~~-~tp~Eni~a~~~a~~~yg 394 (411)
|.+..+.+.+... .+.+-+- -||. +-.+|+++++.+.+++++
T Consensus 116 il~nl~~l~~~g~--~v~iR~~-vIPg~nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 116 VLENLRLLVSEGV--NVIPRLP-LIPGFTLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHHHHHhCCC--cEEEEEE-EECCCCCCHHHHHHHHHHHHHcC
Confidence 6555555544322 2333211 1232 345788999988888875
No 265
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=71.46 E-value=12 Score=36.52 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=69.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC---C-HHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL---P-PHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i---S-p~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
.+|.+||.+.++.+. .|+|.+.++=... |.. + | ++=++.+++|.+.+ ++|++
T Consensus 152 ~~~TdPeeA~~Fv~~--------------TgvD~LAvaiGt~HG~Yk~~~~p----~L~f~~L~~I~~~~-----~iPLV 208 (307)
T PRK05835 152 AVLVNPKEAEQFVKE--------------SQVDYLAPAIGTSHGAFKFKGEP----KLDFERLQEVKRLT-----NIPLV 208 (307)
T ss_pred ccCCCHHHHHHHHHh--------------hCCCEEEEccCccccccCCCCCC----ccCHHHHHHHHHHh-----CCCEE
Confidence 568999887776653 4888765543222 332 2 3 23334455554443 68999
Q ss_pred EEecCCcc-----------------------cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CC
Q 015201 293 LYINGNGG-----------------------FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FS 345 (411)
Q Consensus 293 ~H~CG~~~-----------------------~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~g 345 (411)
+|-+-.+. .+...++.|+.-+|++.... ...+++.+... -..+||..+ ..
T Consensus 209 LHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~ 285 (307)
T PRK05835 209 LHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANED---KSQFDLRKFFSP 285 (307)
T ss_pred EeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhC---CccCCHHHHHHH
Confidence 99874432 23334567888888865321 22344444221 123566544 35
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 015201 346 PLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~ 363 (411)
..+.+.+.+++.|+.++.
T Consensus 286 ~~~~~~~~v~~~i~~~gs 303 (307)
T PRK05835 286 AQLALKNVVKERMKLLGS 303 (307)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 567888888888888764
No 266
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.42 E-value=13 Score=36.04 Aligned_cols=120 Identities=14% Similarity=0.239 Sum_probs=70.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-C-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-G-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
.+|.+||.+.++.+ +.|+|.+.++=... | .-.|+. -+..+++ +++.. ++|+++|-
T Consensus 150 ~~~T~pe~a~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~p~l----~~~~l~~----I~~~~-~vPLVlHG 206 (283)
T PRK07998 150 DCKTEPEKVKDFVE--------------RTGCDMLAVSIGNVHGLEDIPRI----DIPLLKR----IAEVS-PVPLVIHG 206 (283)
T ss_pred cccCCHHHHHHHHH--------------HhCcCeeehhccccccCCCCCCc----CHHHHHH----HHhhC-CCCEEEeC
Confidence 66899987744333 45777654432211 2 212432 1223344 44443 68999998
Q ss_pred cCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 296 NGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 296 CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
.-... .+...++.|+.-+|++...- ...+++.+... -..+||..+ ....+.+.+.+++.|+.++.
T Consensus 207 gSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 277 (283)
T PRK07998 207 GSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNN---HNEANLARVMAKAKQAVEEDVYSKIKMMNS 277 (283)
T ss_pred CCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 75444 47778889999999965321 22233433211 123666544 35668899999999998875
No 267
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=71.39 E-value=1e+02 Score=29.82 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCEEE-EecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCc
Q 015201 235 QAIADYIIYQVESGAHCIQ-IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVD 311 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~-i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d 311 (411)
+.+...+++..+..+++|. ++.....+++- .+++.++.+.+++.. ++|+.+|.+ |... .+..-.+.|+.
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg---~~~~~~~v~~~a~~~-----~vPV~lHlDHg~~~~~~~~ai~~GFs 100 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGG---ADSLAHMVKALAEKY-----GVPVALHLDHGASFEDCKQAIRAGFS 100 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhch---HHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHhcCCc
Confidence 3444555566677888763 22222224442 233444444444333 599999997 4333 46666778888
Q ss_pred EEEcCC
Q 015201 312 VIGLDW 317 (411)
Q Consensus 312 ~l~~d~ 317 (411)
...+|.
T Consensus 101 SvMiDg 106 (286)
T COG0191 101 SVMIDG 106 (286)
T ss_pred eEEecC
Confidence 887763
No 268
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=71.22 E-value=16 Score=35.39 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++.+ +.|+|.+.++=... |.- .|+ +=+..+++|.+.+ ++|+++|
T Consensus 153 ~~yT~peea~~Fv~--------------~TgvD~LAvaiGt~HG~Y~~~p~----Ld~~~L~~I~~~~-----~vPLVLH 209 (286)
T PRK08610 153 IIYADPKECQELVE--------------KTGIDALAPALGSVHGPYKGEPK----LGFKEMEEIGLST-----GLPLVLH 209 (286)
T ss_pred cccCCHHHHHHHHH--------------HHCCCEEEeeccccccccCCCCC----CCHHHHHHHHHHH-----CCCEEEe
Confidence 66899988777664 56888765543211 211 232 2233444444433 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-+-... .+...++.|+.-+|++...- ...+++.+..+ -..+||..+ ....+.+.+.+++.|+.++.
T Consensus 210 GgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs 281 (286)
T PRK08610 210 GGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNND---KEVYDPRKYLGPAREAIKETVKGKIKEFGT 281 (286)
T ss_pred CCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 874443 47778889999999865321 22334434211 123677654 45678899999999998864
No 269
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=71.22 E-value=23 Score=37.37 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H---hHHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L---ERMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l---~~~~e~g~d 311 (411)
++.+.++.+.++|++.|.+.|..| .+.|..+.+++.-..+ .+ ++++-+|.+.+... + -.-.+.|++
T Consensus 159 ~l~~~~~~~~~~Gad~i~l~DTvG-~~~P~~v~~li~~l~~----~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~ 228 (524)
T PRK12344 159 YALATLKAAAEAGADWVVLCDTNG-GTLPHEVAEIVAEVRA----AP-----GVPLGIHAHNDSGCAVANSLAAVEAGAR 228 (524)
T ss_pred HHHHHHHHHHhCCCCeEEEccCCC-CcCHHHHHHHHHHHHH----hc-----CCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 344445556689999998877665 5889888776533322 22 46789999987652 2 223357999
Q ss_pred EEEc-----CC---CCCHHHHHH
Q 015201 312 VIGL-----DW---TVDMADGRK 326 (411)
Q Consensus 312 ~l~~-----d~---~~di~~~~~ 326 (411)
.++. .. ..++.++.-
T Consensus 229 ~Vd~Tl~GlGERaGNa~lE~lv~ 251 (524)
T PRK12344 229 QVQGTINGYGERCGNANLCSIIP 251 (524)
T ss_pred EEEEecccccccccCcCHHHHHH
Confidence 8843 22 346666553
No 270
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=71.20 E-value=45 Score=31.25 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHhhCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHH
Q 015201 218 MCHTAPHVLRTLLSHLTQA-----------------------IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEP 273 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~-----------------------~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~P 273 (411)
.+.++||+++++.+.+.+. ..++++.+.+.|++.+.+.+-.. +..+.-. +.
T Consensus 106 ~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d-----~~ 180 (241)
T PRK14024 106 AALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPN-----LE 180 (241)
T ss_pred hHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCC-----HH
Confidence 3456777777777654321 24566677788888887776322 2222211 34
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcccHhHHh------cCCCcEEEc-----CCCCCHHHHHHH
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGGFLERMK------GTGVDVIGL-----DWTVDMADGRKR 327 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~------e~g~d~l~~-----d~~~di~~~~~~ 327 (411)
.++++.+.. ++|++ ..|....++++. +.|++++-+ +...++.++++.
T Consensus 181 ~i~~i~~~~-----~ipvi--asGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 181 LLREVCART-----DAPVV--ASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred HHHHHHhhC-----CCCEE--EeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 444444432 46755 356554443332 248887644 345677777654
No 271
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=71.10 E-value=1.3e+02 Score=31.07 Aligned_cols=144 Identities=13% Similarity=0.188 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC-----CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC-----C-----
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDS-----WGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING-----N----- 298 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~-----~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG-----~----- 298 (411)
++-.++.++.+.++|++.|-+... .-.+++++-|+. ++.+++..++.++..+.-| .
T Consensus 25 t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~---------l~~l~~~~~~~~l~~l~r~~N~~G~~~~pd 95 (448)
T PRK12331 25 TEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWER---------LRKIRKAVKKTKLQMLLRGQNLLGYRNYAD 95 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHH---------HHHHHHhCCCCEEEEEeccccccccccCch
Confidence 455566777888899998865311 113688885543 3344433335555555544 2
Q ss_pred -c-c-cHhHHhcCCCcEEEc-CCCCCH---HH---HHHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 299 -G-G-FLERMKGTGVDVIGL-DWTVDM---AD---GRKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 299 -~-~-~l~~~~e~g~d~l~~-d~~~di---~~---~~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
. . .++...+.|+|++.+ +...|. .+ ..++.|.. +.+++.... -.-|++.+.+.++++.+.+.. .+-
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~--v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad-~I~ 172 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGH--AQVAISYTTSPVHTIDYFVKLAKEMQEMGAD-SIC 172 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCe--EEEEEEeecCCCCCHHHHHHHHHHHHHcCCC-EEE
Confidence 1 1 246667889999864 333232 22 22334532 233332221 135788888888887665322 333
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+ ... ..-..|+.+..+++++++
T Consensus 173 i--~Dt-~G~l~P~~v~~lv~alk~ 194 (448)
T PRK12331 173 I--KDM-AGILTPYVAYELVKRIKE 194 (448)
T ss_pred E--cCC-CCCCCHHHHHHHHHHHHH
Confidence 3 222 223456678888888775
No 272
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=70.99 E-value=37 Score=31.39 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhHHhcC
Q 015201 232 HLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LERMKGT 308 (411)
Q Consensus 232 ~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~~~e~ 308 (411)
+++|.-.-..++..++|||.+.+.-. -.. +-.++.++..++. |+.+.+-.=|+++. ..++.++
T Consensus 64 Kt~D~G~~e~~ma~~aGAd~~tV~g~----A~~--------~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~ 129 (217)
T COG0269 64 KTADAGAIEARMAFEAGADWVTVLGA----ADD--------ATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKEL 129 (217)
T ss_pred eecchhHHHHHHHHHcCCCEEEEEec----CCH--------HHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHh
Confidence 45666666677889999999865321 111 2345567788887 45677777788752 4667779
Q ss_pred CCcEEEc----C-------C-CCCHHHHHHHhC--CCeeEEccCCcC
Q 015201 309 GVDVIGL----D-------W-TVDMADGRKRLG--NDISVQGNVDPA 341 (411)
Q Consensus 309 g~d~l~~----d-------~-~~di~~~~~~~g--~~~~l~G~vd~~ 341 (411)
|+|.+.+ | + ..|+.+.++... -++++.||++|.
T Consensus 130 gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~ 176 (217)
T COG0269 130 GVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPE 176 (217)
T ss_pred CCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHH
Confidence 9998743 2 1 235778888765 479999999884
No 273
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.88 E-value=16 Score=37.18 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
..+.+++++++|+|.|.+ |...+- |. ...++++.+++..|+.+++...|........+.++|+|++.+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~g~-~~---------~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAHGH-ST---------RIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCCCC-Ch---------hHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEE
Confidence 456788899999999865 544432 22 233456677777667666666666665567788899999854
No 274
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=70.67 E-value=90 Score=29.77 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHH----HHHHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQ----WSEPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~e----f~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++.+.+.|+|.+-++ ||.+. .|-...-+- +-..-.-++++.+++..+.+|+++-.=-|.
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G 103 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYG 103 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccc
Confidence 445567778889999998766 55552 333322221 223333356667773335788877654332
Q ss_pred --ccHhHHhcCCCcEEEc-CCC----CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC-
Q 015201 300 --GFLERMKGTGVDVIGL-DWT----VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG- 371 (411)
Q Consensus 300 --~~l~~~~e~g~d~l~~-d~~----~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g- 371 (411)
.++....+.|+|++-+ |-. .++.++.++.| +.+.-=+.| .|+++ .++++.+.. .|||-..+
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~g--l~~I~lv~p----~t~~~---Ri~~i~~~a--~gFiY~vs~ 172 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHG--LDLIPLVAP----TTPEE---RIKKIAKQA--SGFIYLVSR 172 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT---EEEEEEET----TS-HH---HHHHHHHH---SSEEEEESS
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcC--CeEEEEECC----CCCHH---HHHHHHHhC--CcEEEeecc
Confidence 2456677889999854 321 12333444444 222222222 35542 334444433 47776532
Q ss_pred CCCC-C-CCcHHHHHHHHHHHHhcCCCCC
Q 015201 372 HGVL-V-GTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 372 c~i~-~-~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
.++. . ..-++.+..+++.+|++...++
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv 201 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHTDLPV 201 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTTSS-E
T ss_pred CCCCCCcccchHHHHHHHHHHHhhcCcce
Confidence 2332 1 1235789999999999875443
No 275
>PRK12999 pyruvate carboxylase; Reviewed
Probab=70.48 E-value=1.2e+02 Score=35.41 Aligned_cols=147 Identities=20% Similarity=0.295 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC--
Q 015201 231 SHLTQAIADYIIYQVES--GAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-- 298 (411)
Q Consensus 231 ~~~~d~~~~~~~~~~e~--G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-- 298 (411)
..-++-.+..++++-++ |.+.| +-|+| +++.+-|++ ++.+++..|+.++.+.+-|.
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~si---E~~ggatfd~~~r~l~e~p~er---------l~~~r~~~~~~~~q~l~Rg~n~ 618 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSL---EMWGGATFDVAYRFLKEDPWER---------LAELREAAPNVLFQMLLRGSNA 618 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEE---EeeCCcchhhhccccCCCHHHH---------HHHHHHhCCCCeEEEEeccccc
Confidence 33455566777778888 87766 44442 667766665 44555544566776666661
Q ss_pred ---------c-c-cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCC----CeeEEccC-CcCccCCCHHHHHHHHH
Q 015201 299 ---------G-G-FLERMKGTGVDVIGL-DWTVDMADGR------KRLGN----DISVQGNV-DPACLFSPLPALTDEIQ 355 (411)
Q Consensus 299 ---------~-~-~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~----~~~l~G~v-d~~~L~gt~eeV~~ev~ 355 (411)
. . +++...+.|+|++.+ |...|+..++ +..|. .++..|.+ ||..-.-|++-+.+.++
T Consensus 619 vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 619 VGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred ccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 1 1 245566789999964 5555543322 22353 23444543 44332357888888888
Q ss_pred HHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 356 RVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 356 ~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++.+.+ -.+++.-.. ..-..|+.+..++.+.++-
T Consensus 699 ~l~~~G---a~~i~ikDt-~G~l~P~~~~~lv~~lk~~ 732 (1146)
T PRK12999 699 ELEKAG---AHILAIKDM-AGLLKPAAAYELVSALKEE 732 (1146)
T ss_pred HHHHcC---CCEEEECCc-cCCCCHHHHHHHHHHHHHH
Confidence 776643 234443322 2334567788888887753
No 276
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=70.48 E-value=81 Score=31.08 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+...|.-..+.. .+... .+.+.+.+..+.+.+... ..+|+.+|.+-..+ .+..-++.|++.+
T Consensus 37 ~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~---~~VPV~lHLDHg~~~e~i~~ai~~GftSV 112 (321)
T PRK07084 37 LQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELG---CPIPIVLHLDHGDSFELCKDCIDSGFSSV 112 (321)
T ss_pred HHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455566677888775332222 23332 222334444444433331 14799999974433 5677788999998
Q ss_pred EcCCC-CC----HHH------HHHHhCCCeeE------EccC-Cc----CccCCCHHHHHHHHHHH-HHHhCCCCeEEeC
Q 015201 314 GLDWT-VD----MAD------GRKRLGNDISV------QGNV-DP----ACLFSPLPALTDEIQRV-VKCAGSRGHILNL 370 (411)
Q Consensus 314 ~~d~~-~d----i~~------~~~~~g~~~~l------~G~v-d~----~~L~gt~eeV~~ev~~~-i~~~~~~gfIls~ 370 (411)
.+|.. .+ +.. ..+.+| +.+ +|+. |. ..++-+||++++.+++. ++.+ -.-+++
T Consensus 113 MiD~S~lp~eeNI~~T~evv~~Ah~~G--vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~L---AvaiGt 187 (321)
T PRK07084 113 MIDGSHLPYEENVALTKKVVEYAHQFD--VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSL---AISIGT 187 (321)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEE---eecccc
Confidence 87642 22 222 223333 222 2222 22 12346899888888762 2222 222444
Q ss_pred CCCCC--------CCCcHHHHHHHHHHH
Q 015201 371 GHGVL--------VGTPEEAVAHFFEVG 390 (411)
Q Consensus 371 gc~i~--------~~tp~Eni~a~~~a~ 390 (411)
-|+.. |....|.++.+-+++
T Consensus 188 ~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 188 SHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred ccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 46653 456777777766655
No 277
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.44 E-value=83 Score=31.10 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCC--CEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 237 IADYIIYQVESGA--HCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 237 ~~~~~~~~~e~G~--d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
..+.+++++++|+ |.|.+--..+. .....++++.+++..|+.+++.=.++...-...+.+.|+|++-
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh-----------~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGH-----------SDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc-----------hHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 3466788899955 99866322221 1233444777777766776665456654456778899999974
No 278
>PRK07534 methionine synthase I; Validated
Probab=70.28 E-value=57 Score=32.39 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=38.0
Q ss_pred hHHhcCCCcEEEcCCCCCHHHHH------HHhCCCeeEEccCCcC-cc-CCCH-HHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 303 ERMKGTGVDVIGLDWTVDMADGR------KRLGNDISVQGNVDPA-CL-FSPL-PALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 303 ~~~~e~g~d~l~~d~~~di~~~~------~~~g~~~~l~G~vd~~-~L-~gt~-eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
+.+.+.|+|.|-++...++.|++ +..+..+.+.=.++.. .| .|++ +++.+.+. ..+.+-..++..|+
T Consensus 138 ~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~----~~~~~~~avGvNC~ 213 (336)
T PRK07534 138 EGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVE----KLGEPPLAFGANCG 213 (336)
T ss_pred HHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHH----hcCCCceEEEecCC
Confidence 34557899999988777777754 2334333333334443 24 4654 44444442 23323467788887
Q ss_pred C
Q 015201 374 V 374 (411)
Q Consensus 374 i 374 (411)
.
T Consensus 214 ~ 214 (336)
T PRK07534 214 V 214 (336)
T ss_pred C
Confidence 5
No 279
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.27 E-value=97 Score=29.14 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------c-cHh
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------G-FLE 303 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------~-~l~ 303 (411)
.+.+.+.++.....|++.+.++-...+ .-+.+...+.....++++.+.++++ |+.+.+|..+.. . .+.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gv~l~iE~~~~~~~~~~~t~~~~~~ 166 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI--GMDLILEPLTPYESNVVCNANDVLH 166 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEEEEecCCCCcccccCCHHHHHH
Confidence 344555666777889999866432222 3456666677778999999999998 788888876521 1 234
Q ss_pred HHhcCCCcE--EEcC------CCCCHHHHHHHhCCCe
Q 015201 304 RMKGTGVDV--IGLD------WTVDMADGRKRLGNDI 332 (411)
Q Consensus 304 ~~~e~g~d~--l~~d------~~~di~~~~~~~g~~~ 332 (411)
.+.+.+-.. +.+| ...++.+..+.+|+++
T Consensus 167 l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~rI 203 (275)
T PRK09856 167 ALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKL 203 (275)
T ss_pred HHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCCcE
Confidence 444444211 2222 2347777777788774
No 280
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.06 E-value=23 Score=34.24 Aligned_cols=121 Identities=22% Similarity=0.303 Sum_probs=74.2
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
..+|.+||.+.++.+ +.|+|.+.++=... |.. .| ++=+..+++|-+.+ ++|+++
T Consensus 151 ~~~~T~pe~a~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~p----~Ld~~~L~~i~~~~-----~vPLVl 207 (284)
T PRK12857 151 EAAMTDPEEARRFVE--------------ETGVDALAIAIGTAHGPYKGEP----KLDFDRLAKIKELV-----NIPIVL 207 (284)
T ss_pred hhhcCCHHHHHHHHH--------------HHCCCEEeeccCccccccCCCC----cCCHHHHHHHHHHh-----CCCEEE
Confidence 367999987777664 33778765443221 221 12 23333445554443 589999
Q ss_pred EecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 294 YINGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 294 H~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
|-+-.+. .+....++|+.-+|+...+- ...+++.+..+ -+.+||..+ ....+.+++.+++.|+.++.
T Consensus 208 HGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK12857 208 HGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKN---PDEIDPRKILGPAREAAKEVIREKIRLFGS 280 (284)
T ss_pred eCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9875554 47888899999999875432 22334444321 123666544 46678899999999998864
No 281
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=69.90 E-value=95 Score=28.86 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCC-CcEE-
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTG-VDVI- 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g-~d~l- 313 (411)
..+++.+.++|+|.+.+.-... +.+ .++.++.+++. |..+.+=....+. .+..+.+.+ +|.+
T Consensus 78 ~~~i~~~~~~Gad~itvH~ea~----~~~--------~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~Vl 143 (228)
T PTZ00170 78 EKWVDDFAKAGASQFTFHIEAT----EDD--------PKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMVL 143 (228)
T ss_pred HHHHHHHHHcCCCEEEEeccCC----chH--------HHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhHH
Confidence 3556677789999987743321 111 45678888887 4445444444443 344444222 3332
Q ss_pred --EcCCC-----------CCHHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCc
Q 015201 314 --GLDWT-----------VDMADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTP 379 (411)
Q Consensus 314 --~~d~~-----------~di~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp 379 (411)
+++.+ ..+.++++.+++ .+.+-|||++. .++.+.+. |...+|++++= ...+-|
T Consensus 144 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~-----------ti~~~~~a-Gad~iVvGsaI-~~a~d~ 210 (228)
T PTZ00170 144 VMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLE-----------TIDIAADA-GANVIVAGSSI-FKAKDR 210 (228)
T ss_pred hhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHH-----------HHHHHHHc-CCCEEEEchHH-hCCCCH
Confidence 22211 124555555442 45566888772 33344443 33466776542 122347
Q ss_pred HHHHHHHHHHHHh
Q 015201 380 EEAVAHFFEVGKS 392 (411)
Q Consensus 380 ~Eni~a~~~a~~~ 392 (411)
.+.++.+.+..++
T Consensus 211 ~~~~~~i~~~~~~ 223 (228)
T PTZ00170 211 KQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877765
No 282
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=69.88 E-value=1.1e+02 Score=30.38 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=37.7
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCCCEEEEecCC-cc--cHhHHhcCCCcEEEc
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK-CPETPIVLYINGN-GG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~-~~g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~ 315 (411)
+++.|++++...++++|+..+++. +.+++. ..+..+.+-+-++ .+ .++.+++.|++-+++
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll--------~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSi 114 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIF--------EIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISF 114 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHH--------HHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEE
Confidence 677888877777899998877654 333221 1123333333333 22 578899999999876
No 283
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=69.39 E-value=97 Score=28.80 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCEEEEe--cC-CC-C-CCCHHHHHHHHHHH-------------HHHHHHHHHhhCCCCCEEEEecCCcc
Q 015201 239 DYIIYQVESGAHCIQIF--DS-WG-G-QLPPHMWEQWSEPY-------------IREIVSLVRTKCPETPIVLYINGNGG 300 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~--D~-~~-~-~iSp~~f~ef~~Py-------------~k~i~~~i~~~~~g~~~~~H~CG~~~ 300 (411)
+.++.+.++|+|.+.+- |. +. + -++|+..+.+-.-+ -.+.++.+.+.|++ -+.+|.-....
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad-~I~~H~Ea~~~ 98 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGAT-TISFHPEASRH 98 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCC-EEEEcccCccc
Confidence 44566677899987642 21 21 1 36676543332110 12344444444433 25666653322
Q ss_pred ---cHhHHhcCCCcE-EEcCCCCCHHHHHHHhC--CCeeEEccCCcCc----cC-CCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 301 ---FLERMKGTGVDV-IGLDWTVDMADGRKRLG--NDISVQGNVDPAC----LF-SPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 301 ---~l~~~~e~g~d~-l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~----L~-gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
.+..+++.|+.+ +.+...+++..+...+. |.+.+|. ++|.. +. .+-+.| +++++.++..+ ..+.+.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt-V~PGf~GQ~fi~~~l~KI-~~l~~~~~~~~-~~~~Ie 175 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMS-VNPGFGGQAFIPSALDKL-RAIRKKIDALG-KPIRLE 175 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEE-ECCCCCCccccHHHHHHH-HHHHHHHHhcC-CCeeEE
Confidence 356666666544 44555555555554443 3344444 45531 11 233333 23344444321 124343
Q ss_pred CCCCCCCCCcHHHHHHHHHHH
Q 015201 370 LGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~ 390 (411)
. ..|+..||+..+.++.
T Consensus 176 V----DGGI~~eti~~l~~aG 192 (223)
T PRK08745 176 I----DGGVKADNIGAIAAAG 192 (223)
T ss_pred E----ECCCCHHHHHHHHHcC
Confidence 3 3445577777776654
No 284
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=69.38 E-value=1.2e+02 Score=29.93 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec------------CCcc--cHhH
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN------------GNGG--FLER 304 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C------------G~~~--~l~~ 304 (411)
+.++...+.|+..|.+.+....... ..++.++++.+++.++++. +|.. |... .+..
T Consensus 77 e~~~~~~~~G~~~i~l~gG~~p~~~--------~~~~~~i~~~Ik~~~~~i~--~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 77 ERAAEAWKAGATEVCIQGGIHPDLD--------GDFYLDILRAVKEEVPGMH--IHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred HHHHHHHHCCCCEEEEEeCCCCCCC--------HHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 3344556779999888743222222 2466788889988744432 2221 2222 3677
Q ss_pred HhcCCCcEEE
Q 015201 305 MKGTGVDVIG 314 (411)
Q Consensus 305 ~~e~g~d~l~ 314 (411)
+++.|++.++
T Consensus 147 LkeAGl~~i~ 156 (343)
T TIGR03551 147 LKEAGLDSMP 156 (343)
T ss_pred HHHhCccccc
Confidence 8889988775
No 285
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=69.36 E-value=1.4e+02 Score=30.57 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++. +-+++.++...++|
T Consensus 195 v~~~~~a~~~a~~eTG~~~~ya~NiT~~~-------------------------------------~em~~ra~~~~~~G 237 (412)
T TIGR03326 195 VEKLYKVRDKVEAETGERKEYLANITAPV-------------------------------------REMERRAELVADLG 237 (412)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEEecCCH-------------------------------------HHHHHHHHHHHHhC
Confidence 67778888888899886554444444431 11123344556789
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c-c-H-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G-F-L-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~-~-l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+ +. ++.+.+..... +.|+..|-.+.- . . + ..+.=.|+|.+++
T Consensus 238 ~~~~mv~~~~~G~-~~----------l~~l~~~~~~~--~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~~ 304 (412)
T TIGR03326 238 GQYVMVDVVVCGW-SA----------LQYIRELTEDL--GLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLHT 304 (412)
T ss_pred CCeEEEEeeccch-HH----------HHHHHHhhccC--CeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCeeee
Confidence 9987543344442 21 22222221221 567777766531 1 1 2 3333469999875
Q ss_pred CCC------CCH---HHHHHHhCCCeeEEccCCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcH
Q 015201 316 DWT------VDM---ADGRKRLGNDISVQGNVDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPE 380 (411)
Q Consensus 316 d~~------~di---~~~~~~~g~~~~l~G~vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~ 380 (411)
... .+- ..+.+.+-.. +|++.+.+. - | ++..+ .++++.+|. -+|+..|.++ .|+-+-
T Consensus 305 ~t~~~Gk~~~~~~~~~~~~~~~~~~---~~~~k~~~Pv~sGG~~~~~v----p~~~~~~G~-Dvil~~GGGi~gHp~G~~ 376 (412)
T TIGR03326 305 GTAGVGKLEGGKEDTKQINDFLRQK---WHHIKPVFPVSSGGLHPGLV----PPLIDALGK-DLVIQAGGGVHGHPDGPR 376 (412)
T ss_pred CCCccCCCCCCHHHHHHHHHHHhCc---ccCCCCceEecCCCCChhHH----HHHHHhcCC-ceEEecCCccccCCCChh
Confidence 322 122 3334444322 677777652 2 2 44433 556677774 6889889888 367778
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccccccc
Q 015201 381 EAVAHFFEVGKSMKYDNSSQNHVFEESK 408 (411)
Q Consensus 381 Eni~a~~~a~~~yg~~~~~~~~~~~~~~ 408 (411)
+..+||.+++...-+.-..++.|.+.|.
T Consensus 377 aGa~A~rqA~ea~~~G~~l~e~Ak~~~e 404 (412)
T TIGR03326 377 AGAKALRAAIDAIIEGISLDEKAKSVPE 404 (412)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHhcCHH
Confidence 9999999888876544344444444443
No 286
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=69.26 E-value=85 Score=32.39 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC-EEEEecCC---cc--cHhHHhcCCCcEEEcCC-C--
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP-IVLYINGN---GG--FLERMKGTGVDVIGLDW-T-- 318 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~-~~~H~CG~---~~--~l~~~~e~g~d~l~~d~-~-- 318 (411)
.++.|++++...++++++..++ |++.+++..+-.+ .-+-+.++ .+ .++.+++.|++-+++.- .
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~--------ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~ 185 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLAR--------LITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFN 185 (449)
T ss_pred eeeEEEECCCccccCCHHHHHH--------HHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCC
Confidence 4677888888888999987655 4555555321111 11222232 22 57889999999998632 1
Q ss_pred ----------CCHHHHHHHhCCCeeEEc--cCCcCccC----CCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH
Q 015201 319 ----------VDMADGRKRLGNDISVQG--NVDPACLF----SPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE 381 (411)
Q Consensus 319 ----------~di~~~~~~~g~~~~l~G--~vd~~~L~----gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E 381 (411)
.+..++.+.+.. +.=.| +|...+++ -|.|++++.++.+++ .+..+.-+- .-.+-++|+..
T Consensus 186 d~vLk~lgR~~~~~~~~~~i~~-l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~-l~~~~is~y-~L~~~pgT~l~ 261 (449)
T PRK09058 186 TQVRRRAGRKDDREEVLARLEE-LVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRD-LGLDGVDLY-ALNLLPGTPLA 261 (449)
T ss_pred HHHHHHhCCCCCHHHHHHHHHH-HHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHh-cCCCEEEEe-ccccCCCCHHH
Confidence 123333322210 00012 22222223 467777777666665 343333222 24556777654
No 287
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.07 E-value=1.1e+02 Score=29.63 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc-ccHhHHhcCCCcE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG-GFLERMKGTGVDV 312 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~-~~l~~~~e~g~d~ 312 (411)
.+...+++..+.++.+|.-..+.. .+.+. +++.++.+.+.+.. .+|+.+|.+ |.. ..+..-++.|++.
T Consensus 30 ~~~avi~AAee~~sPvIiq~~~~~~~~~g~----~~~~~~~~~~a~~~-----~VPValHLDH~~~~e~i~~ai~~GftS 100 (284)
T PRK12737 30 TLQVVVETAAELRSPVILAGTPGTFSYAGT----DYIVAIAEVAARKY-----NIPLALHLDHHEDLDDIKKKVRAGIRS 100 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccHHhhCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 334555667777888875322211 12332 23344444444333 689999997 433 3577788889999
Q ss_pred EEcCCC-CC----HHHH------HHHhCCCeeE------EccCCcC-------ccCCCHHHHHHHHHHHHHHhC-C-CCe
Q 015201 313 IGLDWT-VD----MADG------RKRLGNDISV------QGNVDPA-------CLFSPLPALTDEIQRVVKCAG-S-RGH 366 (411)
Q Consensus 313 l~~d~~-~d----i~~~------~~~~g~~~~l------~G~vd~~-------~L~gt~eeV~~ev~~~i~~~~-~-~gf 366 (411)
+.+|.. .+ +... .+.+| +++ .|+..-. .++-+||+..+-+++. + + =-.
T Consensus 101 VMiDgS~lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T----gvD~LAv 174 (284)
T PRK12737 101 VMIDGSHLSFEENIAIVKEVVEFCHRYD--ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT----GIDSLAV 174 (284)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh----CCCEEee
Confidence 877642 22 2222 23333 233 2222111 1345888887777653 2 2 123
Q ss_pred EEeCCCCCC---CCCcHHHHHHHHHHH
Q 015201 367 ILNLGHGVL---VGTPEEAVAHFFEVG 390 (411)
Q Consensus 367 Ils~gc~i~---~~tp~Eni~a~~~a~ 390 (411)
-+++-|++- |....+.++.+-+.+
T Consensus 175 aiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 175 AIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred ccCccccccCCCCcCCHHHHHHHHHHh
Confidence 345557764 345666666665544
No 288
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=69.00 E-value=1.3e+02 Score=29.95 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+.++++++.+.++|++.+ .+..+-.--||.-|+.+...-++.+.+..++. |+|++-=. =+...++.+.++ +|++-
T Consensus 107 e~~~~~A~~lk~~ga~~~-r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~--Gl~v~tev-~d~~~~~~l~~~-vd~lq 181 (335)
T PRK08673 107 EQILEIARAVKEAGAQIL-RGGAFKPRTSPYSFQGLGEEGLKLLAEAREET--GLPIVTEV-MDPRDVELVAEY-VDILQ 181 (335)
T ss_pred HHHHHHHHHHHHhchhhc-cCcEecCCCCCcccccccHHHHHHHHHHHHHc--CCcEEEee-CCHHHHHHHHHh-CCeEE
Confidence 344566667777777643 22222345677777777777777777777776 67755322 222357777787 88887
Q ss_pred cCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CC-CCCC-CCcHHHHHHHH
Q 015201 315 LDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GH-GVLV-GTPEEAVAHFF 387 (411)
Q Consensus 315 ~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc-~i~~-~tp~Eni~a~~ 387 (411)
+.. ..+..-+++. .|..+.+--| +.+|.+|+...+..+... |+...+|.- |. +.++ .-..=|+.++.
T Consensus 182 IgAr~~~N~~LL~~va~~~kPViLk~G-----~~~ti~E~l~A~e~i~~~-GN~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 182 IGARNMQNFDLLKEVGKTNKPVLLKRG-----MSATIEEWLMAAEYILAE-GNPNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred ECcccccCHHHHHHHHcCCCcEEEeCC-----CCCCHHHHHHHHHHHHHc-CCCeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 643 2344444432 2221211111 235899999988887643 444566643 22 2322 22334555555
Q ss_pred HHHHhcC
Q 015201 388 EVGKSMK 394 (411)
Q Consensus 388 ~a~~~yg 394 (411)
..-+.++
T Consensus 256 ~lk~~~~ 262 (335)
T PRK08673 256 VIKKLTH 262 (335)
T ss_pred HHHHhcC
Confidence 4444444
No 289
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=68.89 E-value=1.2e+02 Score=29.44 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC----Cc-c--cHhHHh-cC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING----NG-G--FLERMK-GT 308 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG----~~-~--~l~~~~-e~ 308 (411)
.++.++...+.|+|++.+.-+.-.-.|+ +=+.-|++.+++... +.|++++.+. .. . .+..+. +.
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~y~~~~~----~~l~~~f~~ia~a~~----~lpv~iYn~P~~tg~~l~~~~l~~L~~~~ 155 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPYYNKPNQ----EALYDHFAEVADAVP----DFPIIIYNIPGRAAQEIAPKTMARLRKDC 155 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCCCCH----HHHHHHHHHHHHhcc----CCCEEEEeCchhcCcCCCHHHHHHHHhhC
Confidence 3455666677899998776665332333 455667777777652 4677777543 22 1 234444 33
Q ss_pred CCcEEEc-CCCCCHHHH---HHHhCCCeeEEccCCc
Q 015201 309 GVDVIGL-DWTVDMADG---RKRLGNDISVQGNVDP 340 (411)
Q Consensus 309 g~d~l~~-d~~~di~~~---~~~~g~~~~l~G~vd~ 340 (411)
+ ++..+ +...|+..+ .+..+++..++.|.|.
T Consensus 156 p-nv~giK~ss~d~~~~~~~~~~~~~~~~v~~G~d~ 190 (294)
T TIGR02313 156 P-NIVGAKESNKDFEHLNHLFLEAGRDFLLFCGIEL 190 (294)
T ss_pred C-CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchH
Confidence 3 44443 333355443 3334545555555543
No 290
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=68.82 E-value=1.8e+02 Score=34.17 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhc
Q 015201 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKG 307 (411)
Q Consensus 229 ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e 307 (411)
+.+.=.+..++.++.|++.||+.|-+.-+.. .++.+.=-+.+.|.+..+- +.. ++|+.+ +-... .++.-.+
T Consensus 378 i~~~d~~~al~~A~~qve~GA~iIDVn~g~~-~id~~eem~rvv~~i~~~~----~~~-~vPlsI--DS~~~~ViEaaLk 449 (1229)
T PRK09490 378 IKEEDYDEALDVARQQVENGAQIIDINMDEG-MLDSEAAMVRFLNLIASEP----DIA-RVPIMI--DSSKWEVIEAGLK 449 (1229)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHHHHHHHHHHHHhhh----ccC-CceEEE--eCCcHHHHHHHHh
Confidence 3445557778889999999999987753322 4665544344444443332 211 466543 32222 4555555
Q ss_pred C--CCcEEE-cCC--C-C---CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHh----C-C-CCeEEeCCC
Q 015201 308 T--GVDVIG-LDW--T-V---DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCA----G-S-RGHILNLGH 372 (411)
Q Consensus 308 ~--g~d~l~-~d~--~-~---di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~----~-~-~gfIls~gc 372 (411)
. |.+++| +.. . - .+..+.++||-.+++| -+|..-.-.|.|+-.+-++|+++.+ | + ..+|+-|.-
T Consensus 450 ~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m-~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv 528 (1229)
T PRK09490 450 CIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVM-AFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFDPNI 528 (1229)
T ss_pred hcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCCc
Confidence 4 888885 322 1 1 2566678899766555 4666545567787777777777753 3 2 578887663
Q ss_pred CCCCCCcHH----HHHHHHHHHHh
Q 015201 373 GVLVGTPEE----AVAHFFEVGKS 392 (411)
Q Consensus 373 ~i~~~tp~E----ni~a~~~a~~~ 392 (411)
++-.|..| +....+++.+.
T Consensus 529 -~~v~t~~ee~~~~~~~~leair~ 551 (1229)
T PRK09490 529 -FAVATGIEEHNNYAVDFIEATRW 551 (1229)
T ss_pred -ceeecChHHHHHHHHHHHHHHHH
Confidence 34455443 44555666663
No 291
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=68.79 E-value=98 Score=30.88 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
..+.++..++.|++.|++=+.. .+...+. ...+++.+.++++ +.++++|. .++.-...|+|++|+.
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~---~~~~~~~----~~a~~L~~l~~~~--~~~lIIND-----~vdlAl~~~aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKT---ADDRQRL----EEAKKLKELCHRY--GALFIVND-----RVDIALAVDADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCC---CCHHHHH----HHHHHHHHHHHHh--CCeEEEeC-----hHHHHHHcCCCEEEeC
Confidence 3455677789999999875433 2343333 3344555666665 56777764 3566667899999985
Q ss_pred C-CCCHHHHHHHhCCCeeE
Q 015201 317 W-TVDMADGRKRLGNDISV 334 (411)
Q Consensus 317 ~-~~di~~~~~~~g~~~~l 334 (411)
. ...+.++++.+|.+..+
T Consensus 225 q~dl~~~~aR~llg~~~iI 243 (347)
T PRK02615 225 QEDLPLAVARQLLGPEKII 243 (347)
T ss_pred hhhcCHHHHHHhcCCCCEE
Confidence 4 34567777777654433
No 292
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=68.39 E-value=1.8e+02 Score=31.43 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG---QLPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~---~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
-.++.++||.+.+ .-+.++++|+|+| ....++. -+.+.-+.+-+....++.++.+++.......+
T Consensus 35 ~~~~l~~Pe~i~~-----------vH~~yl~AGAdvi-~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~V 102 (612)
T PRK08645 35 EELNLSHPELILR-----------IHREYIEAGADVI-QTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYV 102 (612)
T ss_pred HHhhccCHHHHHH-----------HHHHHHHhCCCEE-ecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 4577889987666 4567889999976 4444432 11111122335555666666555543111122
Q ss_pred EEecCC---------cc----------cHhHHhcCCCcEEEcCCCCCHHHHH------HHhCCCeeEEcc--CCcC-cc-
Q 015201 293 LYINGN---------GG----------FLERMKGTGVDVIGLDWTVDMADGR------KRLGNDISVQGN--VDPA-CL- 343 (411)
Q Consensus 293 ~H~CG~---------~~----------~l~~~~e~g~d~l~~d~~~di~~~~------~~~g~~~~l~G~--vd~~-~L- 343 (411)
.=+-|- .+ .++.+.+.|+|.+-++...++.|++ +..++ +.++-. ++.. .+
T Consensus 103 agsiGP~g~~~~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~-~p~~~Sf~~~~~g~l~ 181 (612)
T PRK08645 103 AGTIGPIGGRGPLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTD-LPIIAQVAFHEDGVTQ 181 (612)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCC-CcEEEEEEECCCCeeC
Confidence 222231 10 1344557899999888777777654 22332 333433 3332 23
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 344 FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 344 ~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
.|++ +.+.+..+ +..+ -..++..|+.. |+.+...++....
T Consensus 182 ~G~~--~~~~~~~~-~~~~--~~avGiNC~~~----p~~~~~~l~~l~~ 221 (612)
T PRK08645 182 NGTS--LEEALKEL-VAAG--ADVVGLNCGLG----PYHMLEALERIPI 221 (612)
T ss_pred CCCC--HHHHHHHH-HhCC--CCEEEecCCCC----HHHHHHHHHHHHh
Confidence 4653 33333333 2232 45566777653 4667776666655
No 293
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=68.34 E-value=89 Score=31.83 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=41.1
Q ss_pred HHHhCCCEEEEec-----CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE-EEEecCCcc-c-------------
Q 015201 244 QVESGAHCIQIFD-----SWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPI-VLYINGNGG-F------------- 301 (411)
Q Consensus 244 ~~e~G~d~i~i~D-----~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~-~~H~CG~~~-~------------- 301 (411)
..+.+...++.+. ..|| =|.|..|++|+.. +.+.+ |.|. -+-.||++- -
T Consensus 34 a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~----iA~~~-----gf~~~~iiLggDHlGPn~Wq~~pa~eAM~ 104 (421)
T PRK15052 34 DLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYG----IADKV-----GFPRERIILGGDHLGPNCWQQEPADAAME 104 (421)
T ss_pred HhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHH----HHHHc-----CCChhcEEeecCCCCCccccCCCHHHHHH
Confidence 3455555554432 2344 5999999998754 55544 4444 445666631 1
Q ss_pred -----HhHHhcCCCcEEEcCCCCC
Q 015201 302 -----LERMKGTGVDVIGLDWTVD 320 (411)
Q Consensus 302 -----l~~~~e~g~d~l~~d~~~d 320 (411)
+....+.|++-|++|..|+
T Consensus 105 ~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 105 KSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred HHHHHHHHHHHcCCceEEecCCCC
Confidence 2334567999999987665
No 294
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=68.34 E-value=1.6e+02 Score=30.93 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVI 313 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l 313 (411)
+.+.+.++.+++.|||.|-++-.... | .-+- ++.+++.+++.. +.|+.+ +-... .++.-.+.|++.+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p--~~~~----v~~~V~~l~~~~-~~pISI--DT~~~~v~eaAL~aGAdiI 232 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---D--DPDV----VKEKVKTALDAL-DSPVIA--DTPTLDELYEALKAGASGV 232 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---C--cHHH----HHHHHHHHHhhC-CCcEEE--eCCCHHHHHHHHHcCCCEE
Confidence 66777888999999999977543321 2 1122 445555555543 456443 32222 4666667799998
Q ss_pred E-cCCCC--CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 314 G-LDWTV--DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 314 ~-~d~~~--di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~ 390 (411)
+ ++... .+..+.+.+|-.++++=. + -...-+...+.+.++.+.+- ..+|+-||=+.+..--.+++.++...-
T Consensus 233 NsVs~~~~d~~~~l~a~~g~~vVlm~~-~---~~~~~~~l~~~ie~a~~~Gi-~~IIlDPglg~~~~~l~~sL~~l~~~r 307 (499)
T TIGR00284 233 IMPDVENAVELASEKKLPEDAFVVVPG-N---QPTNYEELAKAVKKLRTSGY-SKVAADPSLSPPLLGLLESIIRFRRAS 307 (499)
T ss_pred EECCccchhHHHHHHHHcCCeEEEEcC-C---CCchHHHHHHHHHHHHHCCC-CcEEEeCCCCcchHHHHHHHHHHHHHH
Confidence 5 43321 233345667766666632 1 01112334444433333222 367998887643222345555554444
Q ss_pred HhcCC
Q 015201 391 KSMKY 395 (411)
Q Consensus 391 ~~yg~ 395 (411)
++++.
T Consensus 308 ~~~~~ 312 (499)
T TIGR00284 308 RLLNV 312 (499)
T ss_pred HhcCC
Confidence 45553
No 295
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=68.19 E-value=19 Score=35.08 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred HhCCCEEEEec-CCCCCC---CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCCC
Q 015201 246 ESGAHCIQIFD-SWGGQL---PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWTV 319 (411)
Q Consensus 246 e~G~d~i~i~D-~~~~~i---Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~~ 319 (411)
+.|+|.+-++= +.-|+. +| ..-+..++++.+.+ +++|+++|-.-.+. .+....+.|++.+++....
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~k----~l~~e~L~~i~~~~----~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENWE----GLDLDHLEKLTEAV----PGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HcCCCEEeeccccccccCCCCCC----cCCHHHHHHHHHhc----cCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 56889876651 221212 23 23344455555544 24899999763343 5888999999999986532
Q ss_pred --CHHHHHHHhCCCeeE-------EccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 320 --DMADGRKRLGNDISV-------QGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 320 --di~~~~~~~g~~~~l-------~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
+..+..+.+-....- -..+||..+ ....+.+++.+++.|+.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 289 (293)
T PRK07315 236 QIAFANATRKFARDYEANEAEYDKKKLFDPRKFLAPGVKAIQASVEERIDVFGS 289 (293)
T ss_pred HHHHHHHHHHHHHhcccccccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333332322111100 123666544 45678899999999998864
No 296
>PRK00915 2-isopropylmalate synthase; Validated
Probab=68.14 E-value=18 Score=38.03 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H---hHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L---ERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l---~~~~e~g~ 310 (411)
+++.+.+++..++|++.|.+.|..|. +.|..+.+++.-. .+.+... .++++-+|.+-+... + -.-.+.|+
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~~~i~~l----~~~~~~~-~~v~l~~H~HND~GlAvANslaAv~aGa 222 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGY-TTPEEFGELIKTL----RERVPNI-DKAIISVHCHNDLGLAVANSLAAVEAGA 222 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCC-CCHHHHHHHHHHH----HHhCCCc-ccceEEEEecCCCCHHHHHHHHHHHhCC
Confidence 45556666777889999988887776 6787776554322 2222211 126789999877652 2 22335788
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 223 ~~Vd 226 (513)
T PRK00915 223 RQVE 226 (513)
T ss_pred CEEE
Confidence 8874
No 297
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=68.06 E-value=52 Score=36.48 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------H---HHHHHHHHHHHHHHHHhhCC-CCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------W---EQWSEPYIREIVSLVRTKCP-ETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f---~ef~~Py~k~i~~~i~~~~~-g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||-. | -|-=.-+..++++.+++..| +.|+.+-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri 625 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRI 625 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 444444455566777889999998875433 2666632 1 11124566678888887653 46777766
Q ss_pred cCC------c---c---cHhHHhcCCCcEEEcC
Q 015201 296 NGN------G---G---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 296 CG~------~---~---~l~~~~e~g~d~l~~d 316 (411)
... . . +.+.+.+.|+|.+++.
T Consensus 626 ~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 626 SAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 531 1 1 1255667899999874
No 298
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=67.57 E-value=1.2e+02 Score=29.32 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=46.9
Q ss_pred HhhCHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 219 CHTAPHVLRTLLSHL--------TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~--------~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
...+|+.+.++.+.+ -.-....++.+.++|+|.| | -...++| .-+++..+|..+ +.
T Consensus 59 Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI---D-~Te~lrp----------ad~~~~~~K~~f-~~- 122 (293)
T PRK04180 59 RMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI---D-ESEVLTP----------ADEEYHIDKWDF-TV- 122 (293)
T ss_pred ecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE---e-ccCCCCc----------hHHHHHHHHHHc-CC-
Confidence 356888888776542 1111344566678999987 4 2236777 224555666553 33
Q ss_pred EEEEecCCcccHhH--HhcCCCcEEEcC
Q 015201 291 IVLYINGNGGFLER--MKGTGVDVIGLD 316 (411)
Q Consensus 291 ~~~H~CG~~~~l~~--~~e~g~d~l~~d 316 (411)
...||..++=+. -.+.|+|.+...
T Consensus 123 --~fmad~~~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 123 --PFVCGARNLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred --CEEccCCCHHHHHHHHHCCCCeeecc
Confidence 456776554333 335688888653
No 299
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.49 E-value=7.6 Score=37.61 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
+.++..+++|+|.|++ | -|||++-++.+ +.+++ .+.+-..|+++ .++.+..+|+|+++..
T Consensus 208 eea~~a~~agaDiImL-D----nmspe~l~~av--------~~~~~-----~~~leaSGGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 208 AAAEEAAAAGADIIML-D----NMSLEQIEQAI--------TLIAG-----RSRIECSGNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHcCCCEEEE-C----CCCHHHHHHHH--------HHhcC-----ceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3455667889999843 3 47888766544 33432 25677888887 5899999999999875
Q ss_pred C
Q 015201 317 W 317 (411)
Q Consensus 317 ~ 317 (411)
.
T Consensus 270 a 270 (290)
T PRK06559 270 S 270 (290)
T ss_pred c
Confidence 3
No 300
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=67.49 E-value=1.2e+02 Score=29.39 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
.+...+++..+.+..+|.-..+.. .+..- +++.++.+.+.+.. .+|+.+|.+-..+ .+..-++.|++.
T Consensus 30 ~~~avi~AAee~~sPvIlq~~~~~~~~~g~----~~~~~~~~~~A~~~-----~VPValHLDH~~~~e~i~~ai~~GftS 100 (284)
T PRK12857 30 IVQAIVAAAEAEKSPVIIQASQGAIKYAGI----EYISAMVRTAAEKA-----SVPVALHLDHGTDFEQVMKCIRNGFTS 100 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEechhHhhhCCH----HHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 334455566777888775332221 23332 34556666555443 5899999974433 567777889999
Q ss_pred EEcCCC-CC----HHHHHH------HhCCCeeE------EccCCcC-------ccCCCHHHHHHHHHHH-HHHhCCCCeE
Q 015201 313 IGLDWT-VD----MADGRK------RLGNDISV------QGNVDPA-------CLFSPLPALTDEIQRV-VKCAGSRGHI 367 (411)
Q Consensus 313 l~~d~~-~d----i~~~~~------~~g~~~~l------~G~vd~~-------~L~gt~eeV~~ev~~~-i~~~~~~gfI 367 (411)
+.+|.. .+ +...++ .+| +.+ .|+-.-. .++-+||++++-+++. ++.+ -.-
T Consensus 101 VM~DgS~lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~L---Ava 175 (284)
T PRK12857 101 VMIDGSKLPLEENIALTKKVVEIAHAVG--VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDAL---AIA 175 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEE---eec
Confidence 887642 23 222222 232 233 2222111 1345788887777543 2222 233
Q ss_pred EeCCCCCC---CCCcHHHHHHHHHHH
Q 015201 368 LNLGHGVL---VGTPEEAVAHFFEVG 390 (411)
Q Consensus 368 ls~gc~i~---~~tp~Eni~a~~~a~ 390 (411)
+++-|++- |...++.++.+.+.+
T Consensus 176 iGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 176 IGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred cCccccccCCCCcCCHHHHHHHHHHh
Confidence 45556664 456677777776544
No 301
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=67.37 E-value=98 Score=29.77 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=34.5
Q ss_pred HHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 245 VESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPET-PIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~-~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+.|+..|.+.. | .++.++ +.++++.+++. +. .+.+.+.|... .++.+.+.|++.+++
T Consensus 53 ~~~gi~~I~~tG--GEPll~~~---------l~~iv~~l~~~--g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~i 114 (302)
T TIGR02668 53 SEFGVRKVKITG--GEPLLRKD---------LIEIIRRIKDY--GIKDVSMTTNGILLEKLAKKLKEAGLDRVNV 114 (302)
T ss_pred HHcCCCEEEEEC--cccccccC---------HHHHHHHHHhC--CCceEEEEcCchHHHHHHHHHHHCCCCEEEE
Confidence 456888877643 2 255553 23466667665 33 45556666532 356778889987754
No 302
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=67.29 E-value=1.1e+02 Score=30.22 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=37.1
Q ss_pred HHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c--cHhHHhcCCCcEEEc
Q 015201 243 YQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G--FLERMKGTGVDVIGL 315 (411)
Q Consensus 243 ~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~--~l~~~~e~g~d~l~~ 315 (411)
.+.+.|+..|.+.. | .++.|+. .++++.++++ +..+.+.+-|.. + .++.+.+.|++.+.+
T Consensus 48 ~~~~~g~~~v~~~G--GEPll~~~~---------~~ii~~~~~~--g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~i 111 (358)
T TIGR02109 48 QAAELGVLQLHFSG--GEPLARPDL---------VELVAHARRL--GLYTNLITSGVGLTEARLDALADAGLDHVQL 111 (358)
T ss_pred HHHhcCCcEEEEeC--ccccccccH---------HHHHHHHHHc--CCeEEEEeCCccCCHHHHHHHHhCCCCEEEE
Confidence 33456777665532 2 2666642 2567777776 555666677753 2 468888899987744
No 303
>PRK08185 hypothetical protein; Provisional
Probab=67.07 E-value=30 Score=33.49 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCC----CHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSW-GGQL----PPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~-~~~i----Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
.++.+||.+.++.+. .|+|.+.++=.. .++. .|+. -+..+++|.+.+ ++|++
T Consensus 146 ~~~t~peea~~f~~~--------------TgvD~LAvaiGt~HG~y~~~~kp~L----~~e~l~~I~~~~-----~iPLV 202 (283)
T PRK08185 146 IIYTDPEQAEDFVSR--------------TGVDTLAVAIGTAHGIYPKDKKPEL----QMDLLKEINERV-----DIPLV 202 (283)
T ss_pred ccCCCHHHHHHHHHh--------------hCCCEEEeccCcccCCcCCCCCCCc----CHHHHHHHHHhh-----CCCEE
Confidence 567889877555442 388887663221 1222 1322 144455554443 68999
Q ss_pred EEecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 293 LYINGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 293 ~H~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
+|-.-.+. .+...++.|+.-+|++...- ...+++.+..+ -..+|+..+ ....+.+.+.+++.|+.++.
T Consensus 203 lHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs 276 (283)
T PRK08185 203 LHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDN---PSLYEPNQIYPSAIEAAKEVVRHKMDLFNS 276 (283)
T ss_pred EECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhC---cCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99875554 46777889999999865332 22234433211 123566544 45668899999999998874
No 304
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=66.95 E-value=1.2e+02 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.8
Q ss_pred HHHHHHHhCCC--CeEEeCCCCCCCC-CcHHHHHHHHHHHHh
Q 015201 354 IQRVVKCAGSR--GHILNLGHGVLVG-TPEEAVAHFFEVGKS 392 (411)
Q Consensus 354 v~~~i~~~~~~--gfIls~gc~i~~~-tp~Eni~a~~~a~~~ 392 (411)
++++++...+. |+=+++|=...|+ -+++.|++|++.+++
T Consensus 173 V~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ki~~fi~~~k~ 214 (610)
T PRK13803 173 FDRIINLTHPQILGIDVSSGFEDSPGNKKLTLLKSFITNVKK 214 (610)
T ss_pred HHHHHhhhCCCceEEEccCcccCCCCCcCHHHHHHHHHHHHH
Confidence 34455555555 7778888776666 478999999999987
No 305
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=66.86 E-value=30 Score=32.32 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=71.8
Q ss_pred HHHHHHhCCCEEEEecC-------CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 241 IIYQVESGAHCIQIFDS-------WGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~-------~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++...+..++.+++.-. -+| +.-.-.. .+++++++.+++. |+.+.+++..+...++.-+++|+|.+
T Consensus 76 ~~ia~~~kP~~vtLVPEkr~E~TTegG-ldv~~~~----~~l~~~i~~l~~~--gI~VSLFiDPd~~qi~~A~~~GAd~V 148 (234)
T cd00003 76 LEIALEVKPHQVTLVPEKREELTTEGG-LDVAGQA----EKLKPIIERLKDA--GIRVSLFIDPDPEQIEAAKEVGADRV 148 (234)
T ss_pred HHHHHHCCCCEEEECCCCCCCccCCcc-chhhcCH----HHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCcCEE
Confidence 33445667777765521 122 1111112 3456667777887 78899999999888999999999998
Q ss_pred EcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC---CCCeEEeCCCCCCCCCcHHHHHHHHH
Q 015201 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG---SRGHILNLGHGVLVGTPEEAVAHFFE 388 (411)
Q Consensus 314 ~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~---~~gfIls~gc~i~~~tp~Eni~a~~~ 388 (411)
-+.... ...+ + +.++..++..++.+... .-|..++.||++- .+|+..+.+
T Consensus 149 ELhTG~-Ya~a---~-----------------~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLn----y~Nv~~i~~ 201 (234)
T cd00003 149 ELHTGP-YANA---Y-----------------DKAEREAELERIAKAAKLARELGLGVNAGHGLN----YENVKPIAK 201 (234)
T ss_pred EEechh-hhcC---C-----------------CchhHHHHHHHHHHHHHHHHHcCCEEecCCCCC----HHHHHHHHh
Confidence 664320 1110 0 12334445555554432 3699999999986 778887765
No 306
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.67 E-value=1.3e+02 Score=29.18 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+...|.-..+.. .++++ -+.+.++.+.+.+..+- .+|+.+|.+-..+ .+..-++.|++.+
T Consensus 31 ~~avi~AAee~~sPvIl~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~---~vPV~lHLDHg~~~e~i~~ai~~GftSV 104 (286)
T PRK08610 31 TQAILEASQEENAPVILGVSEGAARYMSG---FYTVVKMVEGLMHDLNI---TIPVAIHLDHGSSFEKCKEAIDAGFTSV 104 (286)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCC---CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 33455566777888875322222 12231 12345555555544421 3799999974433 5677788999998
Q ss_pred EcCCC-CC----HHHHH------HHhCCCeeE------EccC-Cc----CccCCCHHHHHHHHHHH-HHHhCCCCeEEeC
Q 015201 314 GLDWT-VD----MADGR------KRLGNDISV------QGNV-DP----ACLFSPLPALTDEIQRV-VKCAGSRGHILNL 370 (411)
Q Consensus 314 ~~d~~-~d----i~~~~------~~~g~~~~l------~G~v-d~----~~L~gt~eeV~~ev~~~-i~~~~~~gfIls~ 370 (411)
.+|.. .+ +...+ ..+| +.+ .|+. |. ..++-+||++.+-+++. ++.+ -.-+++
T Consensus 105 M~DgS~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~L---AvaiGt 179 (286)
T PRK08610 105 MIDASHSPFEENVATTKKVVEYAHEKG--VSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL---APALGS 179 (286)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEE---Eeeccc
Confidence 87642 22 32222 2233 222 2222 11 12356898888877642 2222 233455
Q ss_pred CCCCC---CCCcHHHHHHHHHH
Q 015201 371 GHGVL---VGTPEEAVAHFFEV 389 (411)
Q Consensus 371 gc~i~---~~tp~Eni~a~~~a 389 (411)
-|++. |+...+.++.+.+.
T Consensus 180 ~HG~Y~~~p~Ld~~~L~~I~~~ 201 (286)
T PRK08610 180 VHGPYKGEPKLGFKEMEEIGLS 201 (286)
T ss_pred cccccCCCCCCCHHHHHHHHHH
Confidence 67775 45666766666544
No 307
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.39 E-value=75 Score=29.19 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCC-
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWT- 318 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~- 318 (411)
.++..+++|+..|++-+.. ++.+.|. ...+++.+..+++ +.++++|. .++.-.++|+|++|+...
T Consensus 24 ~l~~~l~~G~~~vqLR~k~---~~~~~~~----~la~~l~~~~~~~--~~~liInd-----~~~lA~~~~adGVHlg~~d 89 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKD---RRDEEVE----ADVVAAIALGRRY--QARLFIND-----YWRLAIKHQAYGVHLGQED 89 (211)
T ss_pred HHHHHHhCCCCEEEEcCCC---CCHHHHH----HHHHHHHHHHHHh--CCeEEEeC-----HHHHHHHcCCCEEEcChHh
Confidence 4678889999999886543 4555554 3445556666665 67888874 356566678888887542
Q ss_pred CCHHHHHHHhCC
Q 015201 319 VDMADGRKRLGN 330 (411)
Q Consensus 319 ~di~~~~~~~g~ 330 (411)
++..++++.+|.
T Consensus 90 ~~~~~~r~~~~~ 101 (211)
T PRK03512 90 LETADLNAIRAA 101 (211)
T ss_pred CCHHHHHHhcCC
Confidence 344566665553
No 308
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=66.37 E-value=49 Score=31.97 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=50.7
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCC-----------------CCCHHH
Q 015201 219 CHTAPHVLRTLLSHLTQA---------------IADYIIYQVESGAHCIQIFDSWGG-----------------QLPPHM 266 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~---------------~~~~~~~~~e~G~d~i~i~D~~~~-----------------~iSp~~ 266 (411)
+..+|+.+.++++.+.+. ..++++.+.++|+|+|.+.....+ -+|...
T Consensus 138 l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~ 217 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA 217 (300)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh
Confidence 445666666666655443 356677778899999987643221 123222
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 267 WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 267 f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
.+|...+.+..+++.. ++|++ .+|.+. ....+...|+|.+.+.
T Consensus 218 ----~~~~~l~~v~~i~~~~-~ipvi--~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 218 ----IKPIALRMVYDVYKMV-DIPII--GVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ----hhHHHHHHHHHHHhcC-CCCEE--EECCCCCHHHHHHHHHcCCCceeec
Confidence 2233334444555543 46644 466653 3444556788877653
No 309
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=66.22 E-value=1.1e+02 Score=28.35 Aligned_cols=137 Identities=16% Similarity=0.146 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~~~e~g~d~l~ 314 (411)
.+.++.+.++|++.+.+.|-.+....+ +...+++..+.+.. ++|+ ..+|.+.. ++.+.+.|++.+.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~~~~~--------~~~~~~i~~i~~~~-~~pv--~~~GGI~s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITASSEGR--------ETMLDVVERVAEEV-FIPL--TVGGGIRSLEDARRLLRAGADKVS 98 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcccccC--------cccHHHHHHHHHhC-CCCE--EEeCCCCCHHHHHHHHHcCCceEE
Confidence 456677778899999998865431111 22334444444432 4564 47787753 5566678998876
Q ss_pred cCCC----C-CHHHHHHHhCC-CeeEEccCCcC--------c-----cCCCHHHHHHHHHHHHHHhCCCCeEEeCCC--C
Q 015201 315 LDWT----V-DMADGRKRLGN-DISVQGNVDPA--------C-----LFSPLPALTDEIQRVVKCAGSRGHILNLGH--G 373 (411)
Q Consensus 315 ~d~~----~-di~~~~~~~g~-~~~l~G~vd~~--------~-----L~gt~eeV~~ev~~~i~~~~~~gfIls~gc--~ 373 (411)
+... . -+.++.+.++. ++.+. +|.. . ...+.++..+.++++.+. +-..++++.=. +
T Consensus 99 ig~~~~~~p~~~~~i~~~~~~~~i~~~--ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-G~d~i~v~~i~~~g 175 (243)
T cd04731 99 INSAAVENPELIREIAKRFGSQCVVVS--IDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDG 175 (243)
T ss_pred ECchhhhChHHHHHHHHHcCCCCEEEE--EEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC-CCCEEEEeccCCCC
Confidence 5432 1 25556677764 44432 3311 1 122444555555555443 32345553211 1
Q ss_pred CCCCCcHHHHHHHHH
Q 015201 374 VLVGTPEEAVAHFFE 388 (411)
Q Consensus 374 i~~~tp~Eni~a~~~ 388 (411)
...+.+.+-++.+.+
T Consensus 176 ~~~g~~~~~i~~i~~ 190 (243)
T cd04731 176 TKKGYDLELIRAVSS 190 (243)
T ss_pred CCCCCCHHHHHHHHh
Confidence 223445565555544
No 310
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=66.17 E-value=28 Score=36.64 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
...+.+++++++|+|.|.+ |..-+ -|..+| +.++.+|+.+|+.+++.=.|.....-..+.+.|+|++-
T Consensus 248 ~~~~r~~~l~~ag~d~i~i-D~~~g-~~~~~~---------~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVL-DSSQG-DSIYQL---------EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred cHHHHHHHHHHcCCCEEEE-eCCCC-CcHHHH---------HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEE
Confidence 3457788999999999865 44222 333333 34667777655655443333333345677889999983
No 311
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=65.90 E-value=23 Score=37.47 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d 311 (411)
++++.+++..++|++.|.++|..| .+.|..+.++ ++.+++..+..++-+|.+-+... + .. -.+.|++
T Consensus 155 ~l~~~~~~a~~aGad~i~i~DTvG-~~~P~~v~~l--------i~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~ 225 (526)
T TIGR00977 155 YALATLATAQQAGADWLVLCDTNG-GTLPHEISEI--------TTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGAT 225 (526)
T ss_pred HHHHHHHHHHhCCCCeEEEecCCC-CcCHHHHHHH--------HHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCC
Confidence 334444555689999999987766 4888887765 33333333233478899877652 3 22 3357888
Q ss_pred EEE
Q 015201 312 VIG 314 (411)
Q Consensus 312 ~l~ 314 (411)
.++
T Consensus 226 ~Vd 228 (526)
T TIGR00977 226 MVQ 228 (526)
T ss_pred EEE
Confidence 874
No 312
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=65.86 E-value=1.1e+02 Score=35.79 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHhcCCCcEEEcCCCCCHHHHHHHh----------CCCeeEEcc---CCcC--ccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 304 RMKGTGVDVIGLDWTVDMADGRKRL----------GNDISVQGN---VDPA--CLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 304 ~~~e~g~d~l~~d~~~di~~~~~~~----------g~~~~l~G~---vd~~--~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
.+.+.|+|.+-++...|+.+++..+ +.++.++-. +|.. ++.|++ +.+.+ ..++. .+-..+
T Consensus 156 ~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~--~~~~~-~~l~~--~~~~av 230 (1178)
T TIGR02082 156 GLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQT--IEAFL-TSLEH--AGIDMI 230 (1178)
T ss_pred HHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCc--HHHHH-HHHhc--CCCCEE
Confidence 4557799999998888887765221 223444443 3443 234543 22222 22222 245678
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhcCCCCCC
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSMKYDNSS 399 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~ 399 (411)
+..|+.. |+.+...++...++...++.
T Consensus 231 GlNCs~g----P~~m~~~l~~l~~~~~~pi~ 257 (1178)
T TIGR02082 231 GLNCALG----PDEMRPHLKHLSEHAEAYVS 257 (1178)
T ss_pred EeCCCCC----HHHHHHHHHHHHHhcCceEE
Confidence 8888865 56677777777666543333
No 313
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.68 E-value=56 Score=31.11 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=33.6
Q ss_pred CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCCCC
Q 015201 331 DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 331 ~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
.+.+|+-.+|..=+| .| +-++++.+. |-.|.|+ ||.|+|....+++.++++|-..+
T Consensus 91 p~vlm~Y~N~i~~~G-~e---~f~~~~~~a-GvdGvii-------pDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 91 PIVLMTYYNPIFQYG-VE---RFAADAAEA-GVDGLII-------PDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred CEEEEecccHHhhcC-HH---HHHHHHHHc-CCcEEEE-------CCCCHHHHHHHHHHHHHcCCcEE
Confidence 466777777642123 22 333333333 3246666 36677888888888888886554
No 314
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=65.52 E-value=56 Score=31.53 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
-+++.++.+++..|+.++.+= |.+........+.|+|++-+|
T Consensus 174 ~i~~av~~~r~~~~~~kIeVE-v~tleea~ea~~~GaDiI~lD 215 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVE-ADTIEQALTVLQASPDILQLD 215 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEE-CCCHHHHHHHHHcCcCEEEEC
Confidence 455566666655433333322 222222333445566666555
No 315
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=65.48 E-value=1.2e+02 Score=29.41 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCc-c--cHhHHhc-CCCcEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNG-G--FLERMKG-TGVDVI 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~-~--~l~~~~e-~g~d~l 313 (411)
+.++...++|+|++.+.-++-...|+ +=+.-|++++.+.. +.|++++. .|.. . .+..+.+ .+ ++.
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~----~~i~~~f~~v~~a~-----~~pvilYn~~g~~l~~~~~~~La~~~~-nvv 159 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQ----EGLYAHVEAVCEST-----DLGVIVYQRDNAVLNADTLERLADRCP-NLV 159 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHhcc-----CCCEEEEeCCCCCCCHHHHHHHHhhCC-CEE
Confidence 45667788999999876665433444 44666888888865 45765544 4532 2 2455554 33 444
Q ss_pred Ec-CCCCCHHH---HHHHhCCCeeEEccC
Q 015201 314 GL-DWTVDMAD---GRKRLGNDISVQGNV 338 (411)
Q Consensus 314 ~~-d~~~di~~---~~~~~g~~~~l~G~v 338 (411)
.+ +...|+.. +.+..+++..++.|.
T Consensus 160 giKds~~d~~~~~~~~~~~~~~~~v~~G~ 188 (296)
T TIGR03249 160 GFKDGIGDMEQMIEITQRLGDRLGYLGGM 188 (296)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEEeCC
Confidence 44 33345544 445556667766665
No 316
>PRK08005 epimerase; Validated
Probab=65.45 E-value=1.1e+02 Score=28.14 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=13.3
Q ss_pred CCCCCCcHHHHHHHHHHHHh
Q 015201 373 GVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~ 392 (411)
.+-.|+..+|+..+.++.-+
T Consensus 167 ~VDGGI~~~~i~~l~~aGad 186 (210)
T PRK08005 167 WADGGITLRAARLLAAAGAQ 186 (210)
T ss_pred EEECCCCHHHHHHHHHCCCC
Confidence 34456778888877775444
No 317
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=65.44 E-value=1.5e+02 Score=29.53 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=73.5
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe--cCCc-c--c-----HhHH-----
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI--NGNG-G--F-----LERM----- 305 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~--CG~~-~--~-----l~~~----- 305 (411)
++..++.|||+|.+.=-+|+ + ++.-.+.-+.++++.++++ |.|++..+ -|.. . . .+.+
T Consensus 152 VedAlrLGAdAV~~tvy~Gs---~--~E~~ml~~l~~i~~ea~~~--GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaR 224 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS---E--ESRRQIEEISEAFEEAHEL--GLATVLWSYLRNSAFKKDGDYHTAADLTGQANH 224 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC---H--HHHHHHHHHHHHHHHHHHh--CCCEEEEecccCcccCCcccccccHHHHHHHHH
Confidence 44577899999877666663 2 2233444578899999998 78987644 4532 1 1 1222
Q ss_pred --hcCCCcEEEcCCCCCHHHHHHH-------------------------hCCCeeEEccCCcCccC----CCHHHHHHHH
Q 015201 306 --KGTGVDVIGLDWTVDMADGRKR-------------------------LGNDISVQGNVDPACLF----SPLPALTDEI 354 (411)
Q Consensus 306 --~e~g~d~l~~d~~~di~~~~~~-------------------------~g~~~~l~G~vd~~~L~----gt~eeV~~ev 354 (411)
.++|.|++=+.+..|.....+. .. -|+.|.+.- ++. .+.+++-+++
T Consensus 225 iaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~--ac~ag~vpV-viAGG~k~~~~e~L~~v 301 (348)
T PRK09250 225 LAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVA--NCYMGRRGL-INSGGASKGEDDLLDAV 301 (348)
T ss_pred HHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHH--hhccCCceE-EEeCCCCCCHHHHHHHH
Confidence 2789999966554433332222 11 233343322 111 2567788888
Q ss_pred HHH---HHHhCCCCeEEeCCCCCCCCCcHHHH
Q 015201 355 QRV---VKCAGSRGHILNLGHGVLVGTPEEAV 383 (411)
Q Consensus 355 ~~~---i~~~~~~gfIls~gc~i~~~tp~Eni 383 (411)
+.+ ++.+ ..|.++ |-++...-.+|.+
T Consensus 302 ~~a~~~i~aG-a~Gv~i--GRNIfQ~~~~ea~ 330 (348)
T PRK09250 302 RTAVINKRAG-GMGLII--GRKAFQRPMAEGV 330 (348)
T ss_pred HHHHHhhhcC-Ccchhh--chhhhcCCcHHHH
Confidence 888 7733 335444 4555444455555
No 318
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=65.32 E-value=17 Score=36.37 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--------cHhHH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--------FLERM 305 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--------~l~~~ 305 (411)
.+...+|++.+.++|...|+. ++..|+.-.+-....++++++.+++. |..++.-+-+..- .++.+
T Consensus 13 ~~~~~~yi~~a~~~Gf~~iFT-----SL~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~~l~~lg~~~~dl~~~ 85 (357)
T PF05913_consen 13 FEENKAYIEKAAKYGFKRIFT-----SLHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPKVLKKLGISYDDLSFF 85 (357)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-----EE---------HHHHHHHHHHHHHHC--T-EEEEEE-CCHHHTTT-BTTBTHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEC-----CCCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHH
Confidence 355678888899999888753 46777777778889999999999998 6667776666531 26678
Q ss_pred hcCCCcEEEcCCCCCHHHHHHHh
Q 015201 306 KGTGVDVIGLDWTVDMADGRKRL 328 (411)
Q Consensus 306 ~e~g~d~l~~d~~~di~~~~~~~ 328 (411)
+++|++++=+|++.+..+..+.-
T Consensus 86 ~~lGi~~lRlD~Gf~~~~ia~ls 108 (357)
T PF05913_consen 86 KELGIDGLRLDYGFSGEEIAKLS 108 (357)
T ss_dssp HHHT-SEEEESSS-SCHHHHHHT
T ss_pred HHcCCCEEEECCCCCHHHHHHHH
Confidence 89999999999988887777754
No 319
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=65.20 E-value=1.4e+02 Score=29.71 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+..+|.-..... .++.. ++ +..++..+.+..+.+|+.+|.+-..+ .+..-++.|++.+
T Consensus 31 ~~avi~AAee~~sPvIiq~s~~~~~~~g~----~~----~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 31 VQAIMEAADETDSPVILQASAGARKYAGE----PF----LRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSV 102 (347)
T ss_pred HHHHHHHHHHhCCCEEEECCccHhhhCCH----HH----HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455566777888875322222 12332 23 34444444333224799999974433 5677788999999
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
.+|.
T Consensus 103 MiDg 106 (347)
T PRK09196 103 MMDG 106 (347)
T ss_pred EecC
Confidence 7764
No 320
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=65.17 E-value=20 Score=37.54 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+++.++++.+.++|+|.|.+.|..|. +.|..+.+++. .+.+.+... +++++-+|.+.+... + .. -.+.|+
T Consensus 239 efl~~~~~~a~~~Gad~I~l~DTvG~-~tP~~v~~lV~----~l~~~~~~~-~~i~I~~H~HND~GlAvANslaAi~aGa 312 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIADTVGI-NMPHEFGELVT----YVKANTPGI-DDIVFSVHCHNDLGLATANTIAGICAGA 312 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCC-CCHHHHHHHHH----HHHHHhccc-cCceeEecccCCcChHHHHHHHHHHhCC
Confidence 34466677788899999988877665 78877666542 222233211 146788898877642 2 22 236798
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 313 ~~Vd 316 (503)
T PLN03228 313 RQVE 316 (503)
T ss_pred CEEE
Confidence 8885
No 321
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=65.04 E-value=1.1e+02 Score=28.14 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC--CcEE-EcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCH
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG--VDVI-GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPL 347 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g--~d~l-~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~ 347 (411)
.+.++++++.+++. +.|+.+|+-+... .++.+.+.| ..++ ++. ..+...+++.....+-+. ++......+.
T Consensus 107 ~~~~~~~~~~a~~~--~~pv~iH~~~~~~~~~~~l~~~~~~~~~i~H~~-~~~~~~~~~~~~~g~~~~--~~~~~~~~~~ 181 (252)
T TIGR00010 107 EEVFRAQLQLAEEL--NLPVIIHARDAEEDVLDILREEKPKVGGVLHCF-TGDAELAKKLLDLGFYIS--ISGIVTFKNA 181 (252)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEecCccHHHHHHHHhcCCCCCEEEEcc-CCCHHHHHHHHHCCCeEe--eceeEecCCc
Confidence 46666777777776 7899999876655 467777764 2333 443 446777777654222221 2221112233
Q ss_pred HHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 348 PALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 348 eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
+.++++++.....+++++++..
T Consensus 182 ----~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 182 ----KSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred ----HHHHHHHHhCCHHHeEecccCC
Confidence 3445555555557999999864
No 322
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=65.01 E-value=1.3e+02 Score=28.63 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC--CcE-EEcCCCCCHHHHHHHh--CCCeeEEccCCcCccCC
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG--VDV-IGLDWTVDMADGRKRL--GNDISVQGNVDPACLFS 345 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g--~d~-l~~d~~~di~~~~~~~--g~~~~l~G~vd~~~L~g 345 (411)
...+++.++..++. +.|+++|+-+... .++.+.+.+ ..+ +|+ +.-+...+++.+ |-.+.| .....+.
T Consensus 111 ~~~F~~ql~lA~~~--~lPviIH~R~A~~d~~~iL~~~~~~~~gi~Hc-FsGs~e~a~~~~d~G~yisi----sG~itfk 183 (256)
T COG0084 111 EEVFEAQLELAKEL--NLPVIIHTRDAHEDTLEILKEEGAPVGGVLHC-FSGSAEEARKLLDLGFYISI----SGIVTFK 183 (256)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEccccHHHHHHHHHhcCCCCCEEEEc-cCCCHHHHHHHHHcCeEEEE----CceeecC
Confidence 34455566667766 7899999999887 578888875 343 344 233677777765 323333 3333333
Q ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC-------cHHHHHHHHHHHHhcCC
Q 015201 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT-------PEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t-------p~Eni~a~~~a~~~yg~ 395 (411)
..+++ +++++..--.+..+-|++-...-. -|+++...++.+.+...
T Consensus 184 ~a~~~----~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~ 236 (256)
T COG0084 184 NAEKL----REVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKG 236 (256)
T ss_pred CcHHH----HHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHhC
Confidence 44444 444444433578888887542111 27888888888877653
No 323
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=64.88 E-value=29 Score=37.06 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeE--EccCCcCcc-CCC
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGG----FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISV--QGNVDPACL-FSP 346 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l--~G~vd~~~L-~gt 346 (411)
-++++++.++++ |+|+ -.||... .++.+..+|++-||+... .+..+|+.+.. +.+ .-.+-...| ..|
T Consensus 484 ~i~~v~~~a~~~--g~~v--~vCGe~A~dp~~~~lLlglGi~~lSm~p~-~i~~vk~~i~~-~~~~~~~~~a~~~l~~~~ 557 (575)
T PRK11177 484 LIKQVIDASHAE--GKWT--GMCGELAGDERATLLLLGMGLDEFSMSAI-SIPRIKKIIRN-TNFEDAKALAEQALAQPT 557 (575)
T ss_pred HHHHHHHHHHhc--CCeE--EEeCCCCCCHHHHHHHHHCCCCeEEECHH-HHHHHHHHHHh-CCHHHHHHHHHHHHcCCC
Confidence 567777788877 6664 5999863 369999999999998653 56666665532 111 011111234 489
Q ss_pred HHHHHHHHHHHHHHh
Q 015201 347 LPALTDEIQRVVKCA 361 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~ 361 (411)
.++|++.+++.++..
T Consensus 558 ~~~v~~~~~~~~~~~ 572 (575)
T PRK11177 558 ADELMTLVNKFIEEK 572 (575)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998877643
No 324
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=64.83 E-value=1.2e+02 Score=28.19 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhc-CC-CcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKG-TG-VDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e-~g-~d~l~ 314 (411)
.|++.+.++|+|.|.++--. .++..++++.+|++ |...-+=.+-.+. .++.+.+ .. +-+++
T Consensus 76 ~~i~~~~~~gad~I~~H~Ea-------------~~~~~~~l~~Ir~~--g~k~GlalnP~T~~~~i~~~l~~vD~VlvMt 140 (223)
T PRK08745 76 RIVPDFADAGATTISFHPEA-------------SRHVHRTIQLIKSH--GCQAGLVLNPATPVDILDWVLPELDLVLVMS 140 (223)
T ss_pred HHHHHHHHhCCCEEEEcccC-------------cccHHHHHHHHHHC--CCceeEEeCCCCCHHHHHHHHhhcCEEEEEE
Confidence 45678888999999875332 13456788999998 4555444444443 4654444 32 22334
Q ss_pred cCCCC-----------CHHHHHHHhCC-----CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC
Q 015201 315 LDWTV-----------DMADGRKRLGN-----DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT 378 (411)
Q Consensus 315 ~d~~~-----------di~~~~~~~g~-----~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t 378 (411)
++.+. .+.++++...+ ++.+=|||+. +.++++.+. |...+|.+++- +-.+-
T Consensus 141 V~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~-----------eti~~l~~a-GaDi~V~GSai-F~~~d 207 (223)
T PRK08745 141 VNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKA-----------DNIGAIAAA-GADTFVAGSAI-FNAPD 207 (223)
T ss_pred ECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCH-----------HHHHHHHHc-CCCEEEEChhh-hCCCC
Confidence 43321 24555554332 2555566654 223344443 33467776652 11223
Q ss_pred cHHHHHHHHHHH
Q 015201 379 PEEAVAHFFEVG 390 (411)
Q Consensus 379 p~Eni~a~~~a~ 390 (411)
+-++++.+.+..
T Consensus 208 ~~~~~~~lr~~~ 219 (223)
T PRK08745 208 YAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHHHHH
Confidence 566666665543
No 325
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.81 E-value=12 Score=36.29 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
-+...+++|+|+|.+ | -|||++-++. ++.+++..+ .+.+-..|+++ .+..+.++|+|+++...
T Consensus 211 ea~eal~~gaDiI~L-D----nm~~e~vk~a--------v~~~~~~~~--~v~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 211 QLDEVLAEGAELVLL-D----NFPVWQTQEA--------VQRRDARAP--TVLLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHcCCCEEEe-C----CCCHHHHHHH--------HHHHhccCC--CEEEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 344456789999844 4 4678776554 444443322 25677888887 58999999999998753
No 326
>PRK15108 biotin synthase; Provisional
Probab=64.78 E-value=1.5e+02 Score=29.38 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
-+++.++...+.|+.-+++.-.+. .|. ..-.+|+.++++.+|+. ++.+ ..+.|... .++.+++.|+|.+
T Consensus 80 EI~~~a~~~~~~G~~~i~i~~~g~---~p~---~~~~e~i~~~i~~ik~~--~i~v-~~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 80 QVLESARKAKAAGSTRFCMGAAWK---NPH---ERDMPYLEQMVQGVKAM--GLET-CMTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCC---CCC---cchHHHHHHHHHHHHhC--CCEE-EEeCCcCCHHHHHHHHHcCCCEE
Confidence 334445556678998886643321 331 12356888889999875 4544 45667765 4789999999998
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
++.-
T Consensus 151 n~~l 154 (345)
T PRK15108 151 NHNL 154 (345)
T ss_pred eecc
Confidence 7643
No 327
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.59 E-value=50 Score=32.85 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=83.4
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe----cCC----------c--cc---
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI----NGN----------G--GF--- 301 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~----CG~----------~--~~--- 301 (411)
.+..++.|+|++.+.=-+++--.+ .-++--.-++.++.+.+++. |+|+++.. .|. . ..
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~-~~~~~~~~~l~rv~~ec~~~--giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~ 188 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDD-AINDRKHAFVERVGAECRAN--DIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIK 188 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcch-HHHHHHHHHHHHHHHHHHHc--CCceEEEEeccCCCccccccccccccCHHHHHH
Confidence 345688999998664444421111 12456777899999999998 78987752 221 1 11
Q ss_pred -HhHHh--cCCCcEEEcCCCCCH---------------HHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHh
Q 015201 302 -LERMK--GTGVDVIGLDWTVDM---------------ADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCA 361 (411)
Q Consensus 302 -l~~~~--e~g~d~l~~d~~~di---------------~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~ 361 (411)
...+. ++|+|++=+....|+ .++.+.+.. ++-..+++...|- .+.++..+.++..++.+
T Consensus 189 a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~-~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aG 267 (340)
T PRK12858 189 TMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFRE-QSDATDLPFIFLSAGVSPELFRRTLEFACEAG 267 (340)
T ss_pred HHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHH-HHhhCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 23455 499999966544332 323333321 1112233222232 26677888888888875
Q ss_pred CC-CCeEEeCC---CCCCC--------------CCcHHHHHHHHHHHHhcC
Q 015201 362 GS-RGHILNLG---HGVLV--------------GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 362 ~~-~gfIls~g---c~i~~--------------~tp~Eni~a~~~a~~~yg 394 (411)
.+ .|++.+=. ++++. .+-.+||+.+-+..++..
T Consensus 268 a~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~~g~~~~~~l~~v~~~~~ 318 (340)
T PRK12858 268 ADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNTEGVANITRLNEVLERTA 318 (340)
T ss_pred CCccchhhhHHHHhhhhccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 53 45554321 12221 223467777777666654
No 328
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.57 E-value=13 Score=35.68 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
-++..+++|+|.| +.| -|||++-++ .++.++.+ + .+++-.-|+++ .++.+.++|+|.+|...
T Consensus 200 ~~~eAl~agaDiI-mLD----Nm~~e~~~~--------av~~l~~~--~-~~~lEaSGgIt~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 200 EAEEALEAGADII-MLD----NMSPEELKE--------AVKLLGLA--G-RALLEASGGITLENIREYAETGVDVISVGA 263 (280)
T ss_pred HHHHHHHcCCCEE-Eec----CCCHHHHHH--------HHHHhccC--C-ceEEEEeCCCCHHHHHHHhhcCCCEEEeCc
Confidence 3456678899988 434 377866554 34443222 2 46788889987 59999999999998754
No 329
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=64.38 E-value=24 Score=34.19 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=72.6
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.+++ .+.|+|.+.++=... |.. .|+. +=+..+++| ++.. ++|+++|
T Consensus 155 ~~~T~peea~~Fv--------------~~TgvD~LAvaiGt~HG~y~~~p~~---Ld~~~L~~I----~~~v-~vPLVlH 212 (288)
T TIGR00167 155 ALYTDPEEAKEFV--------------KLTGVDSLAAAIGNVHGVYKGEPKG---LDFERLEEI----QKYV-NLPLVLH 212 (288)
T ss_pred ccCCCHHHHHHHH--------------hccCCcEEeeccCccccccCCCCCc---cCHHHHHHH----HHHh-CCCEEEe
Confidence 6789998666555 246888766543222 222 2330 222234444 4433 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-.-... .+...++.|+.-+|+...+- ...+++.+..+ -+..||..+ ....+.+.+.+++.|+.++.
T Consensus 213 GgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 284 (288)
T TIGR00167 213 GGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAEN---KDYYDPRVWLRPGEKAMKEVVLEKIKLFGS 284 (288)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875444 47778889999999865321 22334443211 123677544 45678899999999998864
No 330
>PRK14847 hypothetical protein; Provisional
Probab=64.37 E-value=1.6e+02 Score=29.30 Aligned_cols=132 Identities=9% Similarity=0.066 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcC----CCcEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGT----GVDVI 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~----g~d~l 313 (411)
+++++.+.+.|+|.|-++-+ -+|++.|+ ..++|.+... ...+..+..++-.....|+.-.+. +.+.+
T Consensus 57 l~IA~~L~~lGVd~IEvG~P---a~s~~e~e-----~ir~I~~~~~-~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~V 127 (333)
T PRK14847 57 LRLFEQLVAVGLKEIEVAFP---SASQTDFD-----FVRKLIDERR-IPDDVTIEALTQSRPDLIARTFEALAGSPRAIV 127 (333)
T ss_pred HHHHHHHHHcCCCEEEeeCC---CCCHHHHH-----HHHHHHHhCC-CCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEE
Confidence 45677788999999855333 36777765 3444443321 000122222332333334444443 33445
Q ss_pred EcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCC-----C--eEEeCCCCCCCCCcHHHHHHH
Q 015201 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSR-----G--HILNLGHGVLVGTPEEAVAHF 386 (411)
Q Consensus 314 ~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~-----g--fIls~gc~i~~~tp~Eni~a~ 386 (411)
++--.++--..+.+++ .|.+++.+.+.+.++..... | +.+.-+..=...++++.+..+
T Consensus 128 hi~~p~Sd~h~~~kl~---------------~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~ 192 (333)
T PRK14847 128 HLYNPIAPQWRRIVFG---------------MSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREV 192 (333)
T ss_pred EEEecCCHHHHHHHhC---------------CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHH
Confidence 5433333333333332 57888888888777765532 2 244544444556788888888
Q ss_pred HHHHHhc
Q 015201 387 FEVGKSM 393 (411)
Q Consensus 387 ~~a~~~y 393 (411)
++++.+.
T Consensus 193 ~~~a~~~ 199 (333)
T PRK14847 193 CDAVSAI 199 (333)
T ss_pred HHHHHHH
Confidence 8877554
No 331
>PTZ00413 lipoate synthase; Provisional
Probab=64.29 E-value=1.7e+02 Score=29.69 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc----ccHhHHhcCCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG----GFLERMKGTGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~----~~l~~~~e~g~d~ 312 (411)
.+.+++..+.|+..+.+......-++..-++ .+.+.++.|++..+++ .+..+ |+. ..+..+++.|+++
T Consensus 183 ~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-----~~a~~I~~Ir~~~p~~--~IevligDf~g~~e~l~~L~eAG~dv 255 (398)
T PTZ00413 183 EKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-----HVARCVELIKESNPEL--LLEALVGDFHGDLKSVEKLANSPLSV 255 (398)
T ss_pred HHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-----HHHHHHHHHHccCCCC--eEEEcCCccccCHHHHHHHHhcCCCE
Confidence 3445566677888665443333334444443 4557788888764443 33333 543 3588999999999
Q ss_pred EEc--CC-----------CCC-------HHHHHHHhCCCeeEEccCCc--Ccc--C-CCHHHHHHHHHHHHHHhCC----
Q 015201 313 IGL--DW-----------TVD-------MADGRKRLGNDISVQGNVDP--ACL--F-SPLPALTDEIQRVVKCAGS---- 363 (411)
Q Consensus 313 l~~--d~-----------~~d-------i~~~~~~~g~~~~l~G~vd~--~~L--~-gt~eeV~~ev~~~i~~~~~---- 363 (411)
++- +. ..+ +..+++.| -|++.. ..+ . -|.||+.+-.+.+.+..-+
T Consensus 256 ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f------~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 256 YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFT------NGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHh------cCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEee
Confidence 953 21 112 22333432 233333 122 2 4888887777777765432
Q ss_pred CCeEEeCCCCCC--CCCcHHHHHHHHHHHHhcCCCCCCCCc
Q 015201 364 RGHILNLGHGVL--VGTPEEAVAHFFEVGKSMKYDNSSQNH 402 (411)
Q Consensus 364 ~gfIls~gc~i~--~~tp~Eni~a~~~a~~~yg~~~~~~~~ 402 (411)
|.|.--+-..+| .-++||....+-+.+.+.|-.-....+
T Consensus 330 GQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgP 370 (398)
T PTZ00413 330 GQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGP 370 (398)
T ss_pred ccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecC
Confidence 444444444444 458999999999999998865444444
No 332
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.12 E-value=56 Score=31.22 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=17.0
Q ss_pred CEEEEecCCcc------cHhHHhcCCCcEEEc
Q 015201 290 PIVLYINGNGG------FLERMKGTGVDVIGL 315 (411)
Q Consensus 290 ~~~~H~CG~~~------~l~~~~e~g~d~l~~ 315 (411)
.+-+-.+|+.+ .+..+.+.|+|++-+
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl 48 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIEL 48 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34555678743 245677889999854
No 333
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.06 E-value=31 Score=33.42 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=49.6
Q ss_pred HhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCC-----------------CCCHHH
Q 015201 219 CHTAPHVLRTLLSHLTQA---------------IADYIIYQVESGAHCIQIFDSWGG-----------------QLPPHM 266 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~---------------~~~~~~~~~e~G~d~i~i~D~~~~-----------------~iSp~~ 266 (411)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+.....+ -+|+..
T Consensus 138 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 217 (301)
T PRK07259 138 FGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPA 217 (301)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcC
Confidence 345677777777766543 245567777899999876543221 133322
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEc
Q 015201 267 WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGL 315 (411)
Q Consensus 267 f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~ 315 (411)
.. |+..+.+..+++.. ++|++ .+|.+. ....+...|+|.+.+
T Consensus 218 ~~----p~~l~~v~~i~~~~-~ipvi--~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 218 IK----PIALRMVYQVYQAV-DIPII--GMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred cc----cccHHHHHHHHHhC-CCCEE--EECCCCCHHHHHHHHHcCCCceeE
Confidence 22 23333344444432 46644 456553 345555678887765
No 334
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=63.99 E-value=91 Score=32.20 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=36.6
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCC-cc--cHhHHhcCCCcEEEcC
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP---ETPIVLYINGN-GG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~---g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~d 316 (411)
++.-|.+++...++++++.++++ ++.++++.+ +..+.+-+.+. .+ .++.+++.|++.+++.
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~l--------l~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiG 169 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERL--------MAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFG 169 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHH--------HHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEEC
Confidence 45667776777778999877664 444444321 22222222222 22 5788999999998764
No 335
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=63.96 E-value=53 Score=30.33 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHH----------------
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA---------------- 236 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~---------------- 236 (411)
.+.++.+.++.+..+-+.|.+...-.+...+-.| .... .+=..++++|+.++++.+.....
T Consensus 63 ~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G--~~~v-ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~ 139 (232)
T TIGR03572 63 FELISNLAEECFMPLTVGGGIRSLEDAKKLLSLG--ADKV-SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSD 139 (232)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC--CCEE-EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCc
Q ss_pred ---------------HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc
Q 015201 237 ---------------IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF 301 (411)
Q Consensus 237 ---------------~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~ 301 (411)
.++.++.+.++|++.+.+.+ +-...+.+.+-++.++++.+.+ ++|++ ..|....
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~----i~~~g~~~g~~~~~~~~i~~~~-----~ipvi--a~GGi~s 208 (232)
T TIGR03572 140 YKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNS----IDRDGTMKGYDLELIKTVSDAV-----SIPVI--ALGGAGS 208 (232)
T ss_pred EEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeC----CCccCCcCCCCHHHHHHHHhhC-----CCCEE--EECCCCC
Q ss_pred HhH----HhcCCCcEEEc
Q 015201 302 LER----MKGTGVDVIGL 315 (411)
Q Consensus 302 l~~----~~e~g~d~l~~ 315 (411)
+++ +.+.|++.+.+
T Consensus 209 ~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 209 LDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHHcCCCEEEE
No 336
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=63.93 E-value=1.4e+02 Score=28.60 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c-cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G-FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~-~l---~~~~e~ 308 (411)
.+.+.++.+++.|+|++++....|. .+|.++.++.+.-..+ .. + +++.|+.+.. . -+ ....+.
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~----~~-----~-~vi~gvg~~~~~~ai~~a~~a~~~ 90 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSD----IT-----D-KVIFQVGSLNLEESIELARAAKSF 90 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHH----Hc-----C-CEEEEeCcCCHHHHHHHHHHHHHc
Confidence 3445566788899999998888774 7999988775543322 22 2 2566654432 2 23 445568
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 91 Gad~v~v 97 (279)
T cd00953 91 GIYAIAS 97 (279)
T ss_pred CCCEEEE
Confidence 9998753
No 337
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=63.74 E-value=1.4e+02 Score=28.53 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=78.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c--cH----hHHhcCCCc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G--FL----ERMKGTGVD 311 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~--~l----~~~~e~g~d 311 (411)
+-++.+.+.|+|+|.+.|.-++-... .-.++...+++.. |++.+.|.+... + -+ ..+.+.|++
T Consensus 19 ~~~~~l~~~~pd~isvT~~~~~~~~~---------~t~~~a~~l~~~~-g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~ 88 (272)
T TIGR00676 19 ETVDRLSPLDPDFVSVTYGAGGSTRD---------RTVRIVRRIKKET-GIPTVPHLTCIGATREEIREILREYRELGIR 88 (272)
T ss_pred HHHHHHhcCCCCEEEeccCCCCCcHH---------HHHHHHHHHHHhc-CCCeeEEeeecCCCHHHHHHHHHHHHHCCCC
Confidence 34455668899999998865542221 1335566776443 678888886542 2 13 334567888
Q ss_pred EEE-c--CCC--------------CCH-HHHHHHhCCCeeEEccCCcCc-cC-CCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 312 VIG-L--DWT--------------VDM-ADGRKRLGNDISVQGNVDPAC-LF-SPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 312 ~l~-~--d~~--------------~di-~~~~~~~g~~~~l~G~vd~~~-L~-gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.+- + |.. +++ ..+++.++ +..+.+...|.- .. .+.++-.+..++-++.+. .|+++
T Consensus 89 nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~-~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA--~f~iT-- 163 (272)
T TIGR00676 89 HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG-DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGA--DYAIT-- 163 (272)
T ss_pred EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCC--CeEee--
Confidence 653 1 111 122 23344444 577777777752 32 333333333444444332 46664
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg 394 (411)
++--..+.+..+++.+++.|
T Consensus 164 ---Q~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 164 ---QLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred ---ccccCHHHHHHHHHHHHHcC
Confidence 34456788889998888876
No 338
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=63.57 E-value=62 Score=30.29 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHhhCHHHHHHHHHHHHH----------------HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015201 218 MCHTAPHVLRTLLSHLTQ----------------AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSL 281 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d----------------~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~ 281 (411)
.|.++|+.+.++++.+.+ ...+.++++.++|+|+|.+.....+- |. --+.+.+++.+.
T Consensus 115 ~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~--~~----a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK--PY----ADMDLLKILSEE 188 (231)
T ss_pred hhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC--ch----hhHHHHHHHHHh
Confidence 567799999999887752 34577788889999999884222220 10 123344444443
Q ss_pred HHhhCCCCCEEEEecCCccc---HhHHhcCCCcEEEcC
Q 015201 282 VRTKCPETPIVLYINGNGGF---LERMKGTGVDVIGLD 316 (411)
Q Consensus 282 i~~~~~g~~~~~H~CG~~~~---l~~~~e~g~d~l~~d 316 (411)
++ ++|++ ..|++.. ...+.++|+|.+++.
T Consensus 189 ~~----~ipII--gNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 189 FN----DKIII--GNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred cC----CCcEE--EECCcCCHHHHHHHHHhCCCeEEEc
Confidence 31 35644 5666642 334445899998764
No 339
>PLN02411 12-oxophytodienoate reductase
Probab=63.42 E-value=77 Score=32.15 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------H---HHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------W---EQWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f---~ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.+.+...+.++...++|.|+|.++-.-+ .|+||-. | -|-=.-+..++++.+++..|.-.+.+-+.
T Consensus 160 I~~ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS 239 (391)
T PLN02411 160 IPEVVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVS 239 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 444555555566777899999999876544 3777722 1 01124456677777777653223666555
No 340
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=63.05 E-value=92 Score=29.34 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCC-Cc
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTG-VD 311 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g-~d 311 (411)
.+++++.+.++|++.|.+.+-.. +..+ .+-+++++++.+.. ++|++ ..|... .+..+.+.| ++
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~-----g~~~~~~~~i~~~~-----~ipvi--a~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKS-----GYDLELTKAVSEAV-----KIPVI--ASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCC-----CCCHHHHHHHHHhC-----CCCEE--EeCCCCCHHHHHHHHHcCCcc
Confidence 35667777888999887755111 1111 12234455554433 46754 344443 355555555 88
Q ss_pred EEEc-----CCCCCHHHHHHHh
Q 015201 312 VIGL-----DWTVDMADGRKRL 328 (411)
Q Consensus 312 ~l~~-----d~~~di~~~~~~~ 328 (411)
++.+ +...++.++++.+
T Consensus 225 gv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 225 AALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred eeeEhHHHhCCCCCHHHHHHHH
Confidence 8643 3356777776654
No 341
>PRK06438 hypothetical protein; Provisional
Probab=63.03 E-value=95 Score=30.12 Aligned_cols=144 Identities=10% Similarity=0.091 Sum_probs=88.1
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHH
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHM 266 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~ 266 (411)
..+-+++.||+|++-.-.. .-|.++ .++++.+++.+.+.++++- ++.+.+.++.-- ++.-
T Consensus 126 ~~lkavLPGPyT~a~lS~n------------e~Y~d~---~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~--~~~~ 185 (292)
T PRK06438 126 KGISIFLPSPYSFYKMSKT------------LEKIDY---NDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY--KNDN 185 (292)
T ss_pred CCceEEecCchhHHHhhcc------------cccCCH---HHHHHHHHHHHHHHHHhCC---cceEEEecchhc--CCCc
Confidence 4456788999998865432 234455 3666667777766666443 888888776421 2111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCc-c
Q 015201 267 WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPAC-L 343 (411)
Q Consensus 267 f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~-L 343 (411)
- ...+.+.+ +..+++|.-+... ..+.+. .++|.+ + ....+..+.+..+ -.-.|=+|.+. .
T Consensus 186 ~---------~~~e~~~e---~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v-~~~~l~~v~ey~~--~v~lGivdarnTk 248 (292)
T PRK06438 186 Y---------SYLSDLAK---KYNVILITSGNVSKLNFNGLG-HKFESI-V-RDDEVDYIINKCS--YPGIKIFSGDNTK 248 (292)
T ss_pred h---------hhhhhccc---cccEEEEEecCCchhhHHhhc-ccceeE-e-ccchhhhHHhhcC--CceeeeeecCccc
Confidence 0 01111111 1346778887776 368888 999999 4 4445666777633 35668888875 4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 344 FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 344 ~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
.-++++ ++.+ -+-...++++++.+
T Consensus 249 mE~~e~-~~~i------~~~~~v~vt~nt~l 272 (292)
T PRK06438 249 MEDLKA-RKEI------SGYDNVLLTHSDYM 272 (292)
T ss_pred ccCHHH-hhhc------cCcceEEEcCCchh
Confidence 567777 6665 12267888888753
No 342
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=62.99 E-value=1.3e+02 Score=30.62 Aligned_cols=61 Identities=10% Similarity=0.057 Sum_probs=37.7
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEecCC---cc--cHhHHhcCCCcEEEcC
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET-PIVLYINGN---GG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~-~~~~H~CG~---~~--~l~~~~e~g~d~l~~d 316 (411)
+++-|++++...++++++..+++ ++.+++..+-. ..-+.+..+ .+ .++.+++.|++-+++.
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~l--------l~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislG 132 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERI--------LTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLG 132 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEE
Confidence 57778888888888999877664 44444332100 012333332 33 4788999999999763
No 343
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=62.86 E-value=3.1e+02 Score=32.22 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE-ec----CCc---c--
Q 015201 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY-IN----GNG---G-- 300 (411)
Q Consensus 231 ~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H-~C----G~~---~-- 300 (411)
+.+.+...+-++.+++.|+|.| +.+...+ -..-+ -+.-..++.++. .+.++|+++. .+ |.. .
T Consensus 144 del~~~y~eq~~~L~~~GvD~i-liETi~d---~~Eak-Aal~a~~~~~~~---~~~~lPv~vS~~~~d~~Gr~~~G~~~ 215 (1178)
T TIGR02082 144 DELVDAYTEQAKGLLDGGVDLL-LIETCFD---TLNAK-AALFAAETVFEE---KGRELPIMISGTIVDTSGRTLSGQTI 215 (1178)
T ss_pred HHHHHHHHHHHHHHHhCCCCEE-EEeccCC---HHHHH-HHHHHHHHHHhh---cCCCCeEEEEEEEECCCCeeCCCCcH
Confidence 4455666677778889999997 4444433 32221 111122222211 1236788776 33 322 1
Q ss_pred --cHhHHhcCCCcEEEcCCCCCHHH---HHHHh----CCCeeEEcc--CCcCc-cC-CCHHHHHHHHHHHHHHhCCCCeE
Q 015201 301 --FLERMKGTGVDVIGLDWTVDMAD---GRKRL----GNDISVQGN--VDPAC-LF-SPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 301 --~l~~~~e~g~d~l~~d~~~di~~---~~~~~----g~~~~l~G~--vd~~~-L~-gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+..+...|++++.+.-...+.. +-+.+ ...+.+.-| ++... .+ .||++..+.+++.++..+ --|
T Consensus 216 ~~~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~gg--v~I 293 (1178)
T TIGR02082 216 EAFLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGG--LNI 293 (1178)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCC--CcE
Confidence 23445567888876643322222 22222 222333222 21111 22 689999999999887632 234
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
++ ||+ +|.||+|+++.++++.+..
T Consensus 294 IG-GCC---GTtPeHI~ala~~l~~~~p 317 (1178)
T TIGR02082 294 VG-GCC---GTTPDHIRAIAEAVKNIKP 317 (1178)
T ss_pred EE-ecC---CCCHHHHHHHHHHhhcCCC
Confidence 44 553 4779999999999987654
No 344
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=62.80 E-value=24 Score=33.96 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---------c-
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQ---LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---------G- 300 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~---iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---------~- 300 (411)
++..++|++...+.|.+.+.+-+.|.+. -+-+.-+..-..-+++|+++.++++-++-++.|.-+.. .
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~ 110 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDE 110 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHH
Confidence 5667788888889999999886677530 00001111222668899999999954455677776611 1
Q ss_pred cHhHHhcCCCcEEEcCC
Q 015201 301 FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 301 ~l~~~~e~g~d~l~~d~ 317 (411)
.++.+.++|+.++=+|+
T Consensus 111 ~f~~~~~~Gv~GvKidF 127 (273)
T PF10566_consen 111 AFKLYAKWGVKGVKIDF 127 (273)
T ss_dssp HHHHHHHCTEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeCc
Confidence 24666777877775554
No 345
>PLN02334 ribulose-phosphate 3-epimerase
Probab=62.74 E-value=55 Score=30.32 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCEEEEec
Q 015201 238 ADYIIYQVESGAHCIQIFD 256 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D 256 (411)
.+.++.+.+.|++.+++-.
T Consensus 23 ~~~l~~~~~~g~~~ihld~ 41 (229)
T PLN02334 23 AEEAKRVLDAGADWLHVDV 41 (229)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 3455677888999998843
No 346
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=62.44 E-value=27 Score=33.65 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
+-++..+++|+|.|++ | -|||++-++. ++.+++..+ .+.+=..|.++ .+..+.++|+|+++..
T Consensus 199 eea~ea~~~GaDiI~l-D----n~~~e~l~~~--------v~~l~~~~~--~~~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 199 EQALTVLQASPDILQL-D----KFTPQQLHHL--------HERLKFFDH--IPTLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHHHHHHcCcCEEEE-C----CCCHHHHHHH--------HHHHhccCC--CEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3455667889999854 4 3777775554 445544322 35677888887 5899999999999875
Q ss_pred C
Q 015201 317 W 317 (411)
Q Consensus 317 ~ 317 (411)
.
T Consensus 264 a 264 (277)
T TIGR01334 264 A 264 (277)
T ss_pred c
Confidence 4
No 347
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=62.41 E-value=66 Score=30.61 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCCC------------CHHHHH---HHhCC-Cee
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWTV------------DMADGR---KRLGN-DIS 333 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~~------------di~~~~---~~~g~-~~~ 333 (411)
.++...++..+++. |+++.++++|... .++.+.+. +|.+.+|-.. +.+.+. +.+.+ .+.
T Consensus 98 ~e~~~~~~~~ake~--Gl~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~~ 174 (260)
T COG1180 98 AEFALDLLRAAKER--GLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGVH 174 (260)
T ss_pred HHHHHHHHHHHHHC--CCcEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCCe
Confidence 34556677888887 7899999999986 35677776 6777665321 111111 11111 011
Q ss_pred EE--ccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCCC-----CCCCcHHHHHHHHHHHHhcCCC
Q 015201 334 VQ--GNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLGHGV-----LVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 334 l~--G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i-----~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
+. =-+-|. ...+.|+|++-++.+-+ ..+ ..+-+.+=|.. .+.++.+.++...+.+++.+..
T Consensus 175 ve~r~lviPg-~~d~~e~i~~i~~~i~~-~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~~ 243 (260)
T COG1180 175 VEIRTLVIPG-YNDDEEEIRELAEFIAD-LGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEEGLK 243 (260)
T ss_pred EEEEEEEECC-CCCCHHHHHHHHHHHHh-cCCcccEEEeccccCccccccCCCcHHHHHHhHhhhHHHHHH
Confidence 11 000010 12567888777777666 443 56666665543 3567888888888888888643
No 348
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=62.32 E-value=1.1e+02 Score=30.11 Aligned_cols=93 Identities=12% Similarity=0.189 Sum_probs=48.5
Q ss_pred HHHhCCCEEEEecCC--CC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcE--EEcCC
Q 015201 244 QVESGAHCIQIFDSW--GG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDV--IGLDW 317 (411)
Q Consensus 244 ~~e~G~d~i~i~D~~--~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~--l~~d~ 317 (411)
+.++|+.++.++-.. +. .++.+ .+.++++.+++. |.++++|.. ..+....+.|..+ .++..
T Consensus 90 l~~~Gv~g~K~f~~~~~~~~~~~~~~--------~l~~~~~~~~~~--g~~v~~H~E---r~~~la~~~g~~l~i~Hiss 156 (337)
T cd01302 90 LFDAGINSLKVFMNYYFGELFDVDDG--------TLMRTFLEIASR--GGPVMVHAE---RAAQLAEEAGANVHIAHVSS 156 (337)
T ss_pred HHHcCCcEEEEEEeccCCCccccCHH--------HHHHHHHHHHhc--CCeEEEeHH---HHHHHHHHhCCcEEEEeCCC
Confidence 356798888765321 11 33333 344556667665 678888887 3344444566654 35544
Q ss_pred CCCHHHHHHHhCCCeeEEccCCcCccCCCHHH
Q 015201 318 TVDMADGRKRLGNDISVQGNVDPACLFSPLPA 349 (411)
Q Consensus 318 ~~di~~~~~~~g~~~~l~G~vd~~~L~gt~ee 349 (411)
...++.+++.-....-+...+-|..|.-+.++
T Consensus 157 ~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~ 188 (337)
T cd01302 157 GEALELIKFAKNKGVKVTCEVCPHHLFLDESM 188 (337)
T ss_pred HHHHHHHHHHHHCCCcEEEEcChhhheeCHHH
Confidence 33443333221112445666667655434443
No 349
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=62.29 E-value=26 Score=36.67 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H---hHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L---ERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l---~~~~e~g~ 310 (411)
+++++.+++..++|++.|.+.|..|. +.|..+.+++.... +.+... +++++-+|.+.+... + -.-.+.|+
T Consensus 146 ~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~~~i~~l~----~~~~~~-~~v~l~~H~HND~GlAvANalaAv~aGa 219 (494)
T TIGR00973 146 PFLARIVEAAINAGATTINIPDTVGY-ALPAEYGNLIKGLR----ENVPNI-DKAILSVHCHNDLGLAVANSLAAVQNGA 219 (494)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-CCHHHHHHHHHHHH----Hhhccc-cCceEEEEeCCCCChHHHHHHHHHHhCC
Confidence 34555566777889999988877765 78888777654332 233221 135688898877642 2 22335788
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 220 ~~vd 223 (494)
T TIGR00973 220 RQVE 223 (494)
T ss_pred CEEE
Confidence 8874
No 350
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=62.01 E-value=1.5e+02 Score=29.53 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC---CCCCEEEEecCC-cc--cHhHHhcCCCcEEEcC
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC---PETPIVLYINGN-GG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~---~g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~d 316 (411)
++.|+++....++++++..++++ +.+++.. .+..+.+=+-++ .+ .++.+++.|++.+++.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll--------~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiG 117 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLF--------ESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLG 117 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHH--------HHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEe
Confidence 67787777777789998876643 3333221 122222222222 23 4788999999998764
No 351
>PRK14057 epimerase; Provisional
Probab=61.98 E-value=67 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK 285 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~ 285 (411)
+|++.+.++|+|.|.++--.. ++..+.++.++++
T Consensus 89 ~~i~~~~~aGad~It~H~Ea~-------------~~~~~~l~~Ir~~ 122 (254)
T PRK14057 89 TAAQACVKAGAHCITLQAEGD-------------IHLHHTLSWLGQQ 122 (254)
T ss_pred HHHHHHHHhCCCEEEEeeccc-------------cCHHHHHHHHHHc
Confidence 899999999999998764321 3457788888887
No 352
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=61.95 E-value=38 Score=34.49 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEE-EecCCc--c--cHhHHhcCCCcEEEcC-CCCCHHHHHHHhCCCeeEEccCCcCccCCC
Q 015201 273 PYIREIVSLVRTKCPETPIVL-YINGNG--G--FLERMKGTGVDVIGLD-WTVDMADGRKRLGNDISVQGNVDPACLFSP 346 (411)
Q Consensus 273 Py~k~i~~~i~~~~~g~~~~~-H~CG~~--~--~l~~~~e~g~d~l~~d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt 346 (411)
|+..++++.+++. ++++.+ +++|.. . .++.+++.|+|-+.++ ..+|.+.-++..|.+ .
T Consensus 89 ~~l~eLl~~lk~~--gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~--------------~ 152 (404)
T TIGR03278 89 PELEELTKGLSDL--GLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDP--------------T 152 (404)
T ss_pred HHHHHHHHHHHhC--CCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCC--------------C
Confidence 5566788899987 566655 577652 2 3788999999988765 345666666655532 1
Q ss_pred HHHHHHHHHHHHHHhCC--CCeEEeCCCCCCCCCcH-HHHHHHHHHHHhcCCC
Q 015201 347 LPALTDEIQRVVKCAGS--RGHILNLGHGVLVGTPE-EAVAHFFEVGKSMKYD 396 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~~~--~gfIls~gc~i~~~tp~-Eni~a~~~a~~~yg~~ 396 (411)
.+.|.+..+++.+ ... ...++- |+.+. +.+.++++.++++|..
T Consensus 153 a~~ILe~L~~L~e-~~~v~~~ivlI------PGiND~eel~~ti~~L~~lg~~ 198 (404)
T TIGR03278 153 PEASLQCLRRFCE-SCEVHAASVII------PGVNDGDVLWKTCADLESWGAK 198 (404)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEEe------CCccCcHHHHHHHHHHHHCCCC
Confidence 2666666666555 222 222232 34433 3445888888887643
No 353
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=61.61 E-value=62 Score=32.57 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHhCCCEEEEecCCCC--CCCH-HHHHHHHHHHHHHHHHHHHhhC
Q 015201 222 APHVLRTLLSHLTQ------------AIADYIIYQVESGAHCIQIFDSWGG--QLPP-HMWEQWSEPYIREIVSLVRTKC 286 (411)
Q Consensus 222 ~Pe~v~~ll~~~~d------------~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp-~~f~ef~~Py~k~i~~~i~~~~ 286 (411)
+||++.+++..+.+ ...++++.++|+|+|.|.++....+ ..|. ..|. .+.+.+++.
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~--------~l~~~i~~~- 187 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPL--------NLKEFIGEL- 187 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHH--------HHHHHHHHC-
Confidence 57777766666665 4668888999999999988754321 1111 1111 233344444
Q ss_pred CCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 287 PETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 287 ~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
++|++.=.|.+......+.++|+|++.
T Consensus 188 -~IPVI~G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 188 -DVPVIAGGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred -CCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 578763122222334455569999975
No 354
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.47 E-value=1.8e+02 Score=29.09 Aligned_cols=147 Identities=11% Similarity=0.113 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
.++++++.+.+.|+..+. .-.+-..-||.-|+.+...-++-+.+..++. |++++-=. -+...++.+.++ +|++-+
T Consensus 116 q~l~~A~~lk~~g~~~~r-~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~--Gl~~~tev-~d~~~v~~~~~~-~d~lqI 190 (352)
T PRK13396 116 MIVETAKRVKAAGAKFLR-GGAYKPRTSPYAFQGHGESALELLAAAREAT--GLGIITEV-MDAADLEKIAEV-ADVIQV 190 (352)
T ss_pred HHHHHHHHHHHcCCCEEE-eeeecCCCCCcccCCchHHHHHHHHHHHHHc--CCcEEEee-CCHHHHHHHHhh-CCeEEE
Confidence 345566666777888753 2233346677777877766666666656555 67754222 222357777777 898866
Q ss_pred CC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-----CCCCcHHHHHHH
Q 015201 316 DW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-----LVGTPEEAVAHF 386 (411)
Q Consensus 316 d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-----~~~tp~Eni~a~ 386 (411)
.. ..+..-+++. .|..+.+-- -+..|.+|+...+..+... |...+||. -||+ ...-..=|+.++
T Consensus 191 ga~~~~n~~LL~~va~t~kPVllk~-----G~~~t~ee~~~A~e~i~~~-Gn~~viL~-erG~rtf~s~y~~~~~dl~ai 263 (352)
T PRK13396 191 GARNMQNFSLLKKVGAQDKPVLLKR-----GMAATIDEWLMAAEYILAA-GNPNVILC-ERGIRTFDRQYTRNTLDLSVI 263 (352)
T ss_pred CcccccCHHHHHHHHccCCeEEEeC-----CCCCCHHHHHHHHHHHHHc-CCCeEEEE-ecCCccCcCCCCCCCcCHHHH
Confidence 43 2344333332 222121111 1235999999999888764 44456664 2433 111233455665
Q ss_pred HHHHHhcC
Q 015201 387 FEVGKSMK 394 (411)
Q Consensus 387 ~~a~~~yg 394 (411)
...-+.++
T Consensus 264 ~~lk~~~~ 271 (352)
T PRK13396 264 PVLRSLTH 271 (352)
T ss_pred HHHHHhhC
Confidence 55433344
No 355
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.40 E-value=11 Score=36.57 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+-++..+++|+|.|.+ | -|||++-++.+ +.+++ .+.+-..|+++ .+..+.++|+|+++.
T Consensus 215 leea~eA~~aGaDiImL-D----nmspe~l~~av--------~~~~~-----~~~lEaSGGIt~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 215 LAQLETALAHGAQSVLL-D----NFTLDMMREAV--------RVTAG-----RAVLEVSGGVNFDTVRAFAETGVDRISI 276 (294)
T ss_pred HHHHHHHHHcCCCEEEE-C----CCCHHHHHHHH--------HhhcC-----CeEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 34455667889999843 3 47888877633 33332 24677888887 589999999999987
Q ss_pred CC
Q 015201 316 DW 317 (411)
Q Consensus 316 d~ 317 (411)
..
T Consensus 277 ga 278 (294)
T PRK06978 277 GA 278 (294)
T ss_pred Cc
Confidence 53
No 356
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=61.40 E-value=1.8e+02 Score=29.09 Aligned_cols=146 Identities=13% Similarity=0.109 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-CCCCHH-------HHH-----HHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG-GQLPPH-------MWE-----QWSEPYIREIVSLVRTKCPETPIVLYINGNGG- 300 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~-------~f~-----ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~- 300 (411)
+.+...+++..+...++|.-.-+.. .++.+. +++ +++.++.+.+.+.. .+|+.+|.+-..+
T Consensus 38 e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a-----~VPValHLDHg~~~ 112 (357)
T TIGR01520 38 STINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHY-----GVPVVLHTDHCAKK 112 (357)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHC-----CCCEEEECCCCCCc
Confidence 3445555666667888764322211 122211 111 12444555444433 5899999974333
Q ss_pred ---cHhHHhcCC-----------CcEEEcCCC-CC----HHHHHHH------hCCCeeE------EccCCcC--------
Q 015201 301 ---FLERMKGTG-----------VDVIGLDWT-VD----MADGRKR------LGNDISV------QGNVDPA-------- 341 (411)
Q Consensus 301 ---~l~~~~e~g-----------~d~l~~d~~-~d----i~~~~~~------~g~~~~l------~G~vd~~-------- 341 (411)
.+...++.| ++.+.+|.. .+ +...++. +| +++ +|+..-.
T Consensus 113 ~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~G--vsVEaELG~vgG~Ed~~~~~~~~~ 190 (357)
T TIGR01520 113 LLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIK--MWLEIEIGITGGEEDGVDNSHMDA 190 (357)
T ss_pred chHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEecccCCccCCcccccccc
Confidence 256555654 777777642 22 3333322 22 222 2222111
Q ss_pred -ccCCCHHHHHHHHHHH-----HHHhCCCCeEEeCCCCCC----CCCcHHHHHHHHHHH
Q 015201 342 -CLFSPLPALTDEIQRV-----VKCAGSRGHILNLGHGVL----VGTPEEAVAHFFEVG 390 (411)
Q Consensus 342 -~L~gt~eeV~~ev~~~-----i~~~~~~gfIls~gc~i~----~~tp~Eni~a~~~a~ 390 (411)
.++-+||++++-+++. ++.+ -.-+++.|++- |...++.++.+-+.+
T Consensus 191 ~~~yTdPeeA~~Fv~~t~~~TgvD~L---AvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~ 246 (357)
T TIGR01520 191 EALYTQPEDVYYAYEELSKISPNFSI---AAAFGNVHGVYKPGNVKLTPDILADGQEYV 246 (357)
T ss_pred cccCCCHHHHHHHHHHhccCCCccee---eeeeccccCCcCCCCCccCHHHHHHHHHHH
Confidence 2346899998888865 2333 34466678875 335667777765443
No 357
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=61.16 E-value=1.5e+02 Score=27.91 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=79.7
Q ss_pred HHHHhCCCEEEEecCCC---------CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC---Ccc----cHhHHh
Q 015201 243 YQVESGAHCIQIFDSWG---------GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING---NGG----FLERMK 306 (411)
Q Consensus 243 ~~~e~G~d~i~i~D~~~---------~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG---~~~----~l~~~~ 306 (411)
...++|.+.+++++... +.++.++..+ ..+.|.... .+|++..... +.. .+..+.
T Consensus 24 ~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~----~~~~I~~~~-----~~Pv~~D~~~G~g~~~~~~~~v~~~~ 94 (243)
T cd00377 24 LAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLA----AVRRIARAV-----DLPVIADADTGYGNALNVARTVRELE 94 (243)
T ss_pred HHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHH----HHHHHHhhc-----cCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 34466999998887421 2566554433 334444444 4676655442 321 256677
Q ss_pred cCCCcEEEcCCC--------------CCHHH-------HHHHhCC--CeeEEccCCcCccC-CCHHHHHHHHHHHHHHhC
Q 015201 307 GTGVDVIGLDWT--------------VDMAD-------GRKRLGN--DISVQGNVDPACLF-SPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 307 e~g~d~l~~d~~--------------~di~~-------~~~~~g~--~~~l~G~vd~~~L~-gt~eeV~~ev~~~i~~~~ 362 (411)
+.|+++++++.. ++.++ +++...+ ++.+..+.|..... .+-||..+.++...+.+.
T Consensus 95 ~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGA 174 (243)
T cd00377 95 EAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGA 174 (243)
T ss_pred HcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCC
Confidence 899999988432 23333 3333343 78888888876542 456777777777777766
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHH
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEV 389 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a 389 (411)
+.-||.++- .+|.++++.+.
T Consensus 175 D~v~v~~~~-------~~~~~~~~~~~ 194 (243)
T cd00377 175 DGIFVEGLK-------DPEEIRAFAEA 194 (243)
T ss_pred CEEEeCCCC-------CHHHHHHHHhc
Confidence 666665443 56777777775
No 358
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.11 E-value=19 Score=34.57 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
-++..+++|+|.|.+ |. +||+..++ +++.++...+ .+.+=..|+++ .+..+.++|+|++++..
T Consensus 194 ea~~A~~~GaDiI~L-Dn----~~~e~l~~--------~v~~~~~~~~--~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 194 EAKNAMNAGADIVMC-DN----MSVEEIKE--------VVAYRNANYP--HVLLEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHHHHcCCCEEEE-CC----CCHHHHHH--------HHHHhhccCC--CeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 344556789998853 33 47766554 4444443222 24566778876 58999999999998753
No 359
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=61.06 E-value=82 Score=27.75 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC---CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDS---WGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~---~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
+.+.+.++...+.|++.+.+.-. ...-.+.+...+.+...++++.+.++++ |+.+.++.++..
T Consensus 71 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gv~i~lE~~~~~ 136 (213)
T PF01261_consen 71 EYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY--GVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH--TSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh--cceEEEecccCc
Confidence 44445556666779999877644 3445667777788888999999999998 678889988764
No 360
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=61.02 E-value=1.4e+02 Score=27.82 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHh-cCC-CcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMK-GTG-VDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~-e~g-~d~l~ 314 (411)
+|++.+.++|+|.|.++--... .+..++++.+|+. |...-+=.+-++. .++.+. +.. +-+++
T Consensus 73 ~~i~~~~~aGad~it~H~Ea~~------------~~~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~~vD~VLvMs 138 (229)
T PRK09722 73 DYIDQLADAGADFITLHPETIN------------GQAFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIHLLDKITVMT 138 (229)
T ss_pred HHHHHHHHcCCCEEEECccCCc------------chHHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHHhcCEEEEEE
Confidence 6778888999999877533211 2345788999998 4555555554444 454444 332 22334
Q ss_pred cCCCC-----------CHHHHHHHhCC---C--eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-CC
Q 015201 315 LDWTV-----------DMADGRKRLGN---D--ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL-VG 377 (411)
Q Consensus 315 ~d~~~-----------di~~~~~~~g~---~--~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-~~ 377 (411)
++.+. -+.++++.+.. + +.+=|||+. +.++++.+.+ ...+|.+++.=+. .+
T Consensus 139 V~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-----------~~i~~~~~aG-ad~~V~Gss~iF~~~~ 206 (229)
T PRK09722 139 VDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-----------KTYEKLMEAG-ADVFIVGTSGLFNLDE 206 (229)
T ss_pred EcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-----------HHHHHHHHcC-CCEEEEChHHHcCCCC
Confidence 44321 24445554432 1 333344443 2334444443 3366666432222 22
Q ss_pred CcHHHHHHHHHHHHhc
Q 015201 378 TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 378 tp~Eni~a~~~a~~~y 393 (411)
.+.+.++.+.+.+++.
T Consensus 207 d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 207 DIDEAWDIMTAQIEAA 222 (229)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3567777776655544
No 361
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.93 E-value=17 Score=33.95 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CCc----------cc-HhH
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GNG----------GF-LER 304 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~~----------~~-l~~ 304 (411)
..-++..++.|||.|-+.=.++.+-|.+ .+....-++++.+.++++ +.|+++..= +.. .. ...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~--~~~~~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ri 154 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN--EDEVIEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARI 154 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH--HHHHHHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccccccc--HHHHHHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHH
Confidence 3445677889999987765665444444 567777888999999976 788888821 111 11 133
Q ss_pred HhcCCCcEEEcCCC-------CCHHHHHHHhC---CC----eeEEccCCc
Q 015201 305 MKGTGVDVIGLDWT-------VDMADGRKRLG---ND----ISVQGNVDP 340 (411)
Q Consensus 305 ~~e~g~d~l~~d~~-------~di~~~~~~~g---~~----~~l~G~vd~ 340 (411)
..+.|+|.+=.... .|....++..+ -. +.+.||++.
T Consensus 155 a~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~ 204 (236)
T PF01791_consen 155 AAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDA 204 (236)
T ss_dssp HHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSH
T ss_pred HHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCCh
Confidence 45789999844333 24444444443 12 667788833
No 362
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=60.93 E-value=45 Score=31.25 Aligned_cols=89 Identities=25% Similarity=0.370 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHH
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~e 353 (411)
.++++++.+++. |+.+.+++..+...++.-+++|+|.+-+..+ ....+ + +.++..++
T Consensus 111 ~l~~~i~~l~~~--gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG-~YA~a---~-----------------~~~~~~~e 167 (237)
T TIGR00559 111 KLCELVKRFHAA--GIEVSLFIDADKDQISAAAEVGADRIEIHTG-PYANA---Y-----------------NKKEMAEE 167 (237)
T ss_pred HHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCcCEEEEech-hhhcC---C-----------------CchhHHHH
Confidence 455566667776 7889999999988899999999999866432 01110 1 11222333
Q ss_pred HHHHHHHh---CCCCeEEeCCCCCCCCCcHHHHHHHHHH
Q 015201 354 IQRVVKCA---GSRGHILNLGHGVLVGTPEEAVAHFFEV 389 (411)
Q Consensus 354 v~~~i~~~---~~~gfIls~gc~i~~~tp~Eni~a~~~a 389 (411)
..++.+.. ..-|.-++.||++- .+|+..+.+.
T Consensus 168 l~~i~~aa~~A~~lGL~VnAGHgLn----y~Nv~~i~~~ 202 (237)
T TIGR00559 168 LQRIVKASVHAHSLGLKVNAGHGLN----YHNVKYFAEI 202 (237)
T ss_pred HHHHHHHHHHHHHcCCEEecCCCCC----HHhHHHHHhC
Confidence 34433332 23689999999986 6788777643
No 363
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=60.87 E-value=2.4e+02 Score=30.36 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-------c
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-------G 300 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-------~ 300 (411)
-+...+.++-++|...+ +-|+| ++..+-|++ + +.+++.-|+.++-++.-|.. .
T Consensus 27 d~~~ia~~~d~~g~~si---E~~gGatfd~~~rfl~edpwer-----l----~~~r~~~pnt~lqmL~Rg~N~vGy~~~~ 94 (596)
T PRK14042 27 DMLPICNKMDDVGFWAM---EVWGGATFDACLRFLKEDPWSR-----L----RQLRQALPNTQLSMLLRGQNLLGYRNYA 94 (596)
T ss_pred HHHHHHHHHHhcCCCEE---EeeCCcccceeecccCCCHHHH-----H----HHHHHhCCCCceEEEeccccccccccCC
Confidence 33445556666776655 44543 444444444 3 34444444677777776541 1
Q ss_pred ------cHhHHhcCCCcEE-EcCCCCCHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 301 ------FLERMKGTGVDVI-GLDWTVDMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 301 ------~l~~~~e~g~d~l-~~d~~~di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
+++...+.|+|++ .+|..+|+..+ .++.|. ...|.|.-.. -.-|+|.+.+.++++.+.+. -
T Consensus 95 d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~--~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Ga---d 169 (596)
T PRK14042 95 DDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK--HAQGAICYTTSPVHTLDNFLELGKKLAEMGC---D 169 (596)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC--EEEEEEEecCCCCCCHHHHHHHHHHHHHcCC---C
Confidence 2344567899999 45665554332 233564 3445433221 13588989888888776532 2
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+++.- +...-..|+.+..++.++++.
T Consensus 170 ~I~Ik-DtaG~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 170 SIAIK-DMAGLLTPTVTVELYAGLKQA 195 (596)
T ss_pred EEEeC-CcccCCCHHHHHHHHHHHHhh
Confidence 34332 233345677788888888763
No 364
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.79 E-value=1.7e+02 Score=28.55 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC-
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW- 317 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~- 317 (411)
+.++.+++.|++.|.+. ++ .|. ++++.+|+. |++ +++.|++........+.|+|.+.++.
T Consensus 78 ~~~~~~~~~~v~~v~~~---~g--~p~-----------~~i~~lk~~--g~~-v~~~v~s~~~a~~a~~~GaD~Ivv~g~ 138 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTG---AG--NPG-----------KYIPRLKEN--GVK-VIPVVASVALAKRMEKAGADAVIAEGM 138 (307)
T ss_pred HHHHHHHhCCCCEEEEc---CC--CcH-----------HHHHHHHHc--CCE-EEEEcCCHHHHHHHHHcCCCEEEEECc
Confidence 45566678899988652 12 231 467778876 554 56888887766778889999996521
Q ss_pred --------CCC---HHHHHHHhCCCeeEEccCCc
Q 015201 318 --------TVD---MADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 318 --------~~d---i~~~~~~~g~~~~l~G~vd~ 340 (411)
..+ +.++++.++-.+...|||..
T Consensus 139 eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~ 172 (307)
T TIGR03151 139 ESGGHIGELTTMALVPQVVDAVSIPVIAAGGIAD 172 (307)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCC
Confidence 112 34555555555777888864
No 365
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=60.69 E-value=1.3e+02 Score=26.99 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVD 311 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d 311 (411)
+...+.++.+++.|++.+.+.... +. ..+ .+..+++.+++ ....+|... .++...+.|.+
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~~-----~~-~~~--------~i~~l~~~~~~---~~iGag~v~~~~~~~~a~~~Ga~ 78 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRT-----PG-ALE--------AIRALRKEFPE---ALIGAGTVLTPEQADAAIAAGAQ 78 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC-----hh-HHH--------HHHHHHHHCCC---CEEEEEeCCCHHHHHHHHHcCCC
Confidence 334456678889999999875432 21 111 44444544322 334556643 46778888988
Q ss_pred EEEcC-CCCCHHHHHHHhCC
Q 015201 312 VIGLD-WTVDMADGRKRLGN 330 (411)
Q Consensus 312 ~l~~d-~~~di~~~~~~~g~ 330 (411)
.++.. ...++.+.++.++-
T Consensus 79 ~i~~p~~~~~~~~~~~~~~~ 98 (190)
T cd00452 79 FIVSPGLDPEVVKAANRAGI 98 (190)
T ss_pred EEEcCCCCHHHHHHHHHcCC
Confidence 88653 33456666666653
No 366
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=60.55 E-value=1.6e+02 Score=28.29 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCcccHhHHhc
Q 015201 234 TQAIADYIIYQVESG-----AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGFLERMKG 307 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G-----~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~l~~~~e 307 (411)
++.-+++++.+.++| ++.|-+ ++ ++++.+++ .++++ + .+. ...+..|...+..-++...+
T Consensus 20 ~~~Kv~i~~~L~~~G~~~~~v~~IE~----~s-~~~~d~~~-----v~~~~---~-~~~~~~~v~~~~r~~~~die~A~~ 85 (279)
T cd07947 20 VEQIVKIYDYLHELGGGSGVIRQTEF----FL-YTEKDREA-----VEACL---D-RGYKFPEVTGWIRANKEDLKLVKE 85 (279)
T ss_pred HHHHHHHHHHHHHcCCCCCccceEEe----cC-cChHHHHH-----HHHHH---H-cCCCCCEEEEEecCCHHHHHHHHH
Confidence 455578889999999 888765 23 35544432 22222 2 210 11255665555556888889
Q ss_pred CCCcEEEcCC-----------CCCHHHHHHHhCC--------CeeEEccC-CcCccCCCH-HHHHHHHHHHHHHhCC-CC
Q 015201 308 TGVDVIGLDW-----------TVDMADGRKRLGN--------DISVQGNV-DPACLFSPL-PALTDEIQRVVKCAGS-RG 365 (411)
Q Consensus 308 ~g~d~l~~d~-----------~~di~~~~~~~g~--------~~~l~G~v-d~~~L~gt~-eeV~~ev~~~i~~~~~-~g 365 (411)
+|++.+++-- ..+.+++.+++.+ .+.+...+ |.. .-+. +.+.+.++++++.+.. |-
T Consensus 86 ~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~--r~d~~~~v~~~~~~~~~~~~~~G~ 163 (279)
T cd07947 86 MGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDIT--RADIYGFVLPFVNKLMKLSKESGI 163 (279)
T ss_pred cCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEccc--CCCcccchHHHHHHHHHHHHHCCC
Confidence 9999886421 2344443332210 11222222 110 1122 4455677777776533 32
Q ss_pred e-EEeCCCCCCCCCc------HHHHHHHHHHHHhc
Q 015201 366 H-ILNLGHGVLVGTP------EEAVAHFFEVGKSM 393 (411)
Q Consensus 366 f-Ils~gc~i~~~tp------~Eni~a~~~a~~~y 393 (411)
- +++...++...+| |+.+..+++.+++.
T Consensus 164 ~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~ 198 (279)
T cd07947 164 PVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD 198 (279)
T ss_pred CEEEEeccCCCcCCccccccchHHHHHHHHHHHHh
Confidence 2 5666566665566 57899999988764
No 367
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.54 E-value=1.4e+02 Score=27.43 Aligned_cols=138 Identities=19% Similarity=0.225 Sum_probs=72.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~~~e~g~d~l~ 314 (411)
.++++.+.+.|++.+.+.|--+.+-.. .--.+.++++.+.. +.|++ .+|.+.. +..+.+.|++.+.
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~~g~----~~~~~~i~~i~~~~-----~~pv~--~~GGI~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAKAGK----PVNLELIEAIVKAV-----DIPVQ--VGGGIRSLETVEALLDAGVSRVI 101 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCC----cccHHHHHHHHHHC-----CCCEE--EcCCcCCHHHHHHHHHcCCCEEE
Confidence 356667778999999998853322111 01133344444332 46754 4777653 4556678999886
Q ss_pred cCCC-----CCHHHHHHHhCCCeeEEccCCcC--cc--CC----CHHHHHHHHHHHHHHhCCCCeEEe-CCC-CCCCCCc
Q 015201 315 LDWT-----VDMADGRKRLGNDISVQGNVDPA--CL--FS----PLPALTDEIQRVVKCAGSRGHILN-LGH-GVLVGTP 379 (411)
Q Consensus 315 ~d~~-----~di~~~~~~~g~~~~l~G~vd~~--~L--~g----t~eeV~~ev~~~i~~~~~~gfIls-~gc-~i~~~tp 379 (411)
+... ..+.++.+.+++++.+ .+|.. .+ .| +..+..+ ..+.++..+.+.+++. .+. +...+.+
T Consensus 102 lg~~~l~~~~~l~ei~~~~~~~i~v--sid~k~~~v~~~g~~~~~~~~~~e-~~~~~~~~g~~~ii~~~~~~~g~~~G~d 178 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKFPGKIVV--GLDARDGKVATDGWLETSGVTAED-LAKRFEDAGVKAIIYTDISRDGTLSGPN 178 (233)
T ss_pred ECchHHhCHHHHHHHHHHhCCCcee--eeeccCCEEEEccCeecCCCCHHH-HHHHHHhcCCCEEEEeeecCcCCcCCCC
Confidence 6432 2366777888776555 44532 11 11 1222222 2333444444444444 221 2234566
Q ss_pred HHHHHHHHHH
Q 015201 380 EEAVAHFFEV 389 (411)
Q Consensus 380 ~Eni~a~~~a 389 (411)
.+.++.+.+.
T Consensus 179 ~~~i~~l~~~ 188 (233)
T PRK00748 179 VEATRELAAA 188 (233)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 368
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.49 E-value=30 Score=33.58 Aligned_cols=62 Identities=27% Similarity=0.410 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
-+...+++|+|+|.+ | -+||+..++.+ +.+++..+. +.+-..|.++ .++.+..+|+|++++.
T Consensus 208 ea~eA~~~GaD~I~L-D----n~~~e~l~~av--------~~~~~~~~~--i~leAsGGIt~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 208 QVQEALEYGADIIML-D----NMPVDLMQQAV--------QLIRQQNPR--VKIEASGNITLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHcCCCEEEE-C----CCCHHHHHHHH--------HHHHhcCCC--eEEEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 344556789999854 3 57787766644 344432223 3456778776 5899999999999874
No 369
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=60.38 E-value=2e+02 Score=29.34 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG 259 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~ 259 (411)
+--++.++++-+.|+|.|-.+-+..
T Consensus 24 e~Ki~Ia~~Ld~lGv~~IE~g~p~~ 48 (409)
T COG0119 24 EEKIRIAKALDDLGVDYIEAGFPVA 48 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 4446777888899999986544433
No 370
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.27 E-value=60 Score=30.81 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=78.5
Q ss_pred HHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHH-HHHHhCCCeeEEccCC-----------------
Q 015201 278 IVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMAD-GRKRLGNDISVQGNVD----------------- 339 (411)
Q Consensus 278 i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~-~~~~~g~~~~l~G~vd----------------- 339 (411)
+.+.....+ ..|+++-.-|....- +.++....+++..--.+-. +++.==+++++.|+|.
T Consensus 20 va~~a~~~G-~~~~ii~l~~eaD~~--~~~~e~~~~~iG~vg~lik~l~~~~v~~vVl~G~v~~Rp~~~~L~~d~~~l~~ 96 (279)
T COG3494 20 VAENARNQG-YAPFIIGLRGEADPE--LKEFEYKEVSIGEVGKLIKLLKTEGVDRVVLAGGVERRPNFRDLRPDKIGLAV 96 (279)
T ss_pred HHHHHHhCC-CCcEEEEecCccchh--hhcCCCeEEeHHHHHHHHHHHHHcCCcEEEEecccccCcchhhcccccchhhH
Confidence 345555553 445565555554422 5555555565543111212 2222125788889988
Q ss_pred -cCc---c-CCCHHHHHHHHHHHHHHhC-------C--CCeEEeCCCC---CCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Q 015201 340 -PAC---L-FSPLPALTDEIQRVVKCAG-------S--RGHILNLGHG---VLVGTPEEAVAHFFEVGKSMKYDNSSQNH 402 (411)
Q Consensus 340 -~~~---L-~gt~eeV~~ev~~~i~~~~-------~--~gfIls~gc~---i~~~tp~Eni~a~~~a~~~yg~~~~~~~~ 402 (411)
|.. + .| +|.+-+.+-+.++..| . ++++..+||= .|.+-..++|.+-+++++..|.-.+.|..
T Consensus 97 lp~Iv~~~~~g-DDaLLk~vi~~~E~~GfKvigahei~~~ll~~~g~lt~~~P~~~d~~dI~~g~~aA~~lg~lDVGQ~a 175 (279)
T COG3494 97 LPKIVEALIRG-DDALLKAVIDFIESRGFKVIGAHEIVPGLLAETGPLTKKEPDNEDLRDIELGIEAANALGALDVGQGA 175 (279)
T ss_pred HHHHHHHhccC-cHHHHHHHHHHHHhcCcEEecHhhhhhhhccCCCcccCCCCChhhHHHHHHHHHHHHHhcccccccee
Confidence 211 1 14 6778888888888654 1 4777777763 36667789999999999999999999998
Q ss_pred cccc
Q 015201 403 VFEE 406 (411)
Q Consensus 403 ~~~~ 406 (411)
++..
T Consensus 176 V~~~ 179 (279)
T COG3494 176 VVVG 179 (279)
T ss_pred EEeC
Confidence 7653
No 371
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=60.22 E-value=1.8e+02 Score=28.59 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+...|.-..+.. .+++. +++.++.+.+.+.. ..+|+.+|.+-..+ .+..-++.|++.+
T Consensus 30 ~~avi~AAe~~~sPvIlq~s~~~~~~~g~----~~~~~~~~~~a~~~----~~VPValHLDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 30 LNAIFEAGNEENSPLFIQASEGAIKYMGI----DMAVGMVKIMCERY----PHIPVALHLDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhCCh----HHHHHHHHHHHHhc----CCCeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 33455566677888875322222 13333 22334444433322 23899999974433 5677788899999
Q ss_pred EcCCCC-C----HHHHHH------HhCCCeeE------EccC-Cc------CccCCCHHHHHHHHHHH-HHHhCCCCeEE
Q 015201 314 GLDWTV-D----MADGRK------RLGNDISV------QGNV-DP------ACLFSPLPALTDEIQRV-VKCAGSRGHIL 368 (411)
Q Consensus 314 ~~d~~~-d----i~~~~~------~~g~~~~l------~G~v-d~------~~L~gt~eeV~~ev~~~-i~~~~~~gfIl 368 (411)
.+|... + +...++ .+| +.+ .|+. |. ..++-+||+.++-+++. ++.+ -.-+
T Consensus 102 M~DgS~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~L---Avai 176 (307)
T PRK05835 102 MIDASHHAFEENLELTSKVVKMAHNAG--VSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYL---APAI 176 (307)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEE---EEcc
Confidence 886432 2 332322 222 222 2221 11 11345788887777653 2222 3335
Q ss_pred eCCCCCC-----CCCcHHHHHHHHHHH
Q 015201 369 NLGHGVL-----VGTPEEAVAHFFEVG 390 (411)
Q Consensus 369 s~gc~i~-----~~tp~Eni~a~~~a~ 390 (411)
++.|+.. |....|.++.+.+.+
T Consensus 177 Gt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 177 GTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred CccccccCCCCCCccCHHHHHHHHHHh
Confidence 5567664 346677777765544
No 372
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=60.19 E-value=37 Score=36.57 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g~ 310 (411)
++....++.++++|.+.++| -|++|.+-|+- -|-++..+++++|++|+-+|++.... -+ -.....|.
T Consensus 718 ~YY~nlad~lV~agtHiL~I-KDMAG~lKP~a--------a~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGA 788 (1176)
T KOG0369|consen 718 DYYLNLADKLVKAGTHILGI-KDMAGVLKPEA--------AKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGA 788 (1176)
T ss_pred HHHHHHHHHHHhccCeEEee-hhhhcccCHHH--------HHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCC
Confidence 44455567778888887766 45667777764 34567889999999999999987654 33 33445788
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
|++.+
T Consensus 789 DVVDv 793 (1176)
T KOG0369|consen 789 DVVDV 793 (1176)
T ss_pred ceeee
Confidence 88743
No 373
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=59.86 E-value=2e+02 Score=28.96 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
.+...++++...+++|+.+++...+.++.+ . +++.++...++|
T Consensus 176 v~~v~~av~~a~~eTG~~~~y~~Nita~~~---e----------------------------------m~~ra~~a~~~G 218 (364)
T cd08210 176 VKACQEAVAEANAETGGRTLYAPNVTGPPT---Q----------------------------------LLERARFAKEAG 218 (364)
T ss_pred HHHHHHHHHHHHhhcCCcceEEEecCCCHH---H----------------------------------HHHHHHHHHHcC
Confidence 677778888888888888877777655421 1 123344556889
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCC---------cc--c-HhH-HhcCCCcEEE
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE-TPIVLYINGN---------GG--F-LER-MKGTGVDVIG 314 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g-~~~~~H~CG~---------~~--~-l~~-~~e~g~d~l~ 314 (411)
++++.+.-.+.+ ++ -++.+.+ +. + .|+..|-.+. +. . +.. ..-.|+|.+.
T Consensus 219 a~~vMv~~~~~G-~~----------~~~~l~~---~~--~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~ 282 (364)
T cd08210 219 AGGVLIAPGLTG-LD----------TFRELAE---DF--DFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVI 282 (364)
T ss_pred CCEEEeecccch-HH----------HHHHHHh---cC--CCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEE
Confidence 999844322323 11 2222222 21 4 6777774432 11 1 333 3347999986
Q ss_pred cCC---C--CCHHHHH---HHhCCCeeEEccCCcCcc--C--CCHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcH
Q 015201 315 LDW---T--VDMADGR---KRLGNDISVQGNVDPACL--F--SPLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPE 380 (411)
Q Consensus 315 ~d~---~--~di~~~~---~~~g~~~~l~G~vd~~~L--~--gt~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~ 380 (411)
+.. . .+.+++. +.+-.+ ++++.+..- - .++ ..+.++++.+++ .+|+..|.++ .|+-+-
T Consensus 283 ~~~~~g~~~~~~e~~~~ia~~~~~~---~~~iK~~~Pv~sgG~~~----~~v~~l~~~~G~-Dvil~aGGgi~gHp~g~~ 354 (364)
T cd08210 283 FPNYGGRFGFSREECQAIADACRRP---MGGLKPILPAPGGGMSV----ERAPEMVELYGP-DVMLLIGGSLLRAGDDLT 354 (364)
T ss_pred eCCCcCCccCCHHHHHHHHHHhcCC---ccccCCCcCcCCCCcCH----HHHHHHHHHcCC-cEEEEccccccCCCCChH
Confidence 532 1 2333333 332222 566766542 2 234 455677777775 5999999888 456678
Q ss_pred HHHHHHHHHH
Q 015201 381 EAVAHFFEVG 390 (411)
Q Consensus 381 Eni~a~~~a~ 390 (411)
+..+||.+++
T Consensus 355 ag~~a~rqa~ 364 (364)
T cd08210 355 ENTRAFVEAV 364 (364)
T ss_pred HHHHHHHhhC
Confidence 9999998864
No 374
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.85 E-value=28 Score=33.72 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+-++..+++|+|.|.+ +-|||++-++.+ +.+++..++ +.+=..|+++ .+..+.++|+|+++.
T Consensus 199 leqa~ea~~agaDiI~L-----Dn~~~e~l~~av--------~~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL-----DKFSPQQATEIA--------QIAPSLAPH--CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred HHHHHHHHHcCCCEEEE-----CCCCHHHHHHHH--------HHhhccCCC--eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 44556667889999855 357888877754 233432222 4667788887 589999999999987
Q ss_pred CC
Q 015201 316 DW 317 (411)
Q Consensus 316 d~ 317 (411)
..
T Consensus 264 ga 265 (284)
T PRK06096 264 SA 265 (284)
T ss_pred Cc
Confidence 54
No 375
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=59.77 E-value=40 Score=31.76 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc--EEEcC-CCCCHHHHHHHhCCCeeEEccCCcCccCCCHH
Q 015201 273 PYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD--VIGLD-WTVDMADGRKRLGNDISVQGNVDPACLFSPLP 348 (411)
Q Consensus 273 Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d--~l~~d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~e 348 (411)
..+++.++..++. +.|+++|+-+... .++.+.+.+.. .+-+. +.-+..++++.+... +.-++.+.....+
T Consensus 111 ~vF~~ql~lA~~~--~~pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g--~~~S~~~~~~~~~-- 184 (255)
T PF01026_consen 111 EVFERQLELAKEL--NLPVSIHCRKAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLG--CYFSFSGAITFKN-- 184 (255)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEESHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTT--EEEEEEGGGGSTT--
T ss_pred HHHHHHHHHHHHh--CCcEEEecCCcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcC--ceEEecccccccc--
Confidence 3555666777776 7899999999877 67999988632 22222 233677777765221 2223444433322
Q ss_pred HHHHHHHHHHHHhCCCCeEEeCCCCC--C-----CCCcHHHHHHHHHHHHhc
Q 015201 349 ALTDEIQRVVKCAGSRGHILNLGHGV--L-----VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 349 eV~~ev~~~i~~~~~~gfIls~gc~i--~-----~~tp~Eni~a~~~a~~~y 393 (411)
.++.++++......++++-|+... | ....|.++...++.+.+.
T Consensus 185 --~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~ 234 (255)
T PF01026_consen 185 --SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEI 234 (255)
T ss_dssp --SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHH
T ss_pred --cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHH
Confidence 234667777666579999999632 1 123577787777766663
No 376
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=59.76 E-value=60 Score=30.75 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
+..+.+.++.+++. |-+-.|+|.+..--++=. +..+.++.....-|=-.|+++|.+.|.. +.++.+++.|
T Consensus 72 ~~~M~~di~~~~~~-GadGvV~G~L~~dg~vD~--------~~~~~Li~~a~~~~vTFHRAfD~~~d~~-~al~~l~~lG 141 (248)
T PRK11572 72 FAAMLEDIATVREL-GFPGLVTGVLDVDGHVDM--------PRMRKIMAAAGPLAVTFHRAFDMCANPL-NALKQLADLG 141 (248)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeeECCCCCcCH--------HHHHHHHHHhcCCceEEechhhccCCHH-HHHHHHHHcC
Confidence 56666777766654 434446665532100000 0012222233334456688888887664 5678888999
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCC
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~ 317 (411)
.+.|..+ |+--+ -.=..+.++++++... + .+|+=-+|-.. .++.+.++|+..+|...
T Consensus 142 ~~rILTS---Gg~~~----a~~g~~~L~~lv~~a~----~-~~Im~GgGV~~~Nv~~l~~tG~~~~H~s~ 199 (248)
T PRK11572 142 VARILTS---GQQQD----AEQGLSLIMELIAASD----G-PIIMAGAGVRLSNLHKFLDAGVREVHSSA 199 (248)
T ss_pred CCEEECC---CCCCC----HHHHHHHHHHHHHhcC----C-CEEEeCCCCCHHHHHHHHHcCCCEEeeCC
Confidence 9998543 22222 1234566666666543 3 24555555444 68888889999998754
No 377
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=59.69 E-value=97 Score=28.81 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhc-CCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKG-TGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e-~g~d~ 312 (411)
.++++.+.+.|+|.+.+.+-.. +... .+-+++.+++.+.. +.|++ ..|... .+..+.+ .|+|.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~~-----g~~~~~i~~i~~~~-----~~pvi--a~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTKK-----GYDLELIRAVSSAV-----NIPVI--ASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCCC-----CCCHHHHHHHHhhC-----CCCEE--EeCCCCCHHHHHHHHHhCCCCE
Confidence 4556777788999987765211 1111 11234444444332 56754 445443 3555555 48988
Q ss_pred EEc-----CCCCCHHHHHHHhC
Q 015201 313 IGL-----DWTVDMADGRKRLG 329 (411)
Q Consensus 313 l~~-----d~~~di~~~~~~~g 329 (411)
+.+ +...++.++++.+.
T Consensus 220 v~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 220 ALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred EEEeHHHHcCCCCHHHHHHHHh
Confidence 754 44568888877653
No 378
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.68 E-value=66 Score=33.60 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCC
Q 015201 233 LTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTG 309 (411)
Q Consensus 233 ~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g 309 (411)
+.+-..+.++.++++|+|.|.+ |..-+- -.+..++++.+|+.+|+.+ -++||+. --..+.+.|
T Consensus 224 ~~~~~~~~a~~Lv~aGvd~i~~-D~a~~~----------~~~~~~~i~~ik~~~p~~~---v~agnv~t~~~a~~l~~aG 289 (479)
T PRK07807 224 INGDVAAKARALLEAGVDVLVV-DTAHGH----------QEKMLEALRAVRALDPGVP---IVAGNVVTAEGTRDLVEAG 289 (479)
T ss_pred cChhHHHHHHHHHHhCCCEEEE-eccCCc----------cHHHHHHHHHHHHHCCCCe---EEeeccCCHHHHHHHHHcC
Confidence 3445668888999999999754 544442 2344556777887765654 3567764 357788899
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
+|++.
T Consensus 290 ad~v~ 294 (479)
T PRK07807 290 ADIVK 294 (479)
T ss_pred CCEEE
Confidence 99986
No 379
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=59.61 E-value=50 Score=30.47 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDV 312 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~ 312 (411)
.+.++++.+.+.|+|+|.+.|.. ++..+++.+|+.+++.-..-++. -+..+.+.|++.
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~~g-------------------~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~ 63 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSNPG-------------------LLELLKELGPDLKIIADYSLNVFNSESARFLKELGASR 63 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcCHH-------------------HHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCE
Confidence 45677788889999998764321 25567777667776555444443 368899999999
Q ss_pred EEcCCCCCHHHHHHHhCC------CeeEEccCCc
Q 015201 313 IGLDWTVDMADGRKRLGN------DISVQGNVDP 340 (411)
Q Consensus 313 l~~d~~~di~~~~~~~g~------~~~l~G~vd~ 340 (411)
+.++...++.++++.... .+.+.|++.-
T Consensus 64 i~ls~EL~~~ei~~i~~~~~~~~~Ev~v~G~~~~ 97 (233)
T PF01136_consen 64 ITLSPELSLEEIKEIAENSPGVPLEVIVHGNLPM 97 (233)
T ss_pred EEECccCCHHHHHHHHHhCCCCeEEEEEeCCccc
Confidence 988877777776654321 2445666543
No 380
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=59.60 E-value=1.9e+02 Score=28.71 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec------------CCcc--cHhHH
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN------------GNGG--FLERM 305 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C------------G~~~--~l~~~ 305 (411)
.++...+.|+.-+++... ..|+ +-..++.++++.+++..|++ -+|.+ |... .+..+
T Consensus 87 ~a~~~~~~G~~~v~l~~G----~~p~----~~~~~~~e~i~~Ik~~~p~i--~i~~~~~~ei~~~~~~~g~~~~e~l~~L 156 (351)
T TIGR03700 87 RVKEAYAPGATEVHIVGG----LHPN----LPFEWYLDMIRTLKEAYPDL--HVKAFTAVEIHHFSKISGLPTEEVLDEL 156 (351)
T ss_pred HHHHHHHCCCcEEEEecC----CCCC----CCHHHHHHHHHHHHHHCCCc--eEEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444556789988877521 2221 11357888999999875443 34432 2222 26778
Q ss_pred hcCCCcEEE
Q 015201 306 KGTGVDVIG 314 (411)
Q Consensus 306 ~e~g~d~l~ 314 (411)
++.|++.+.
T Consensus 157 keAGld~~~ 165 (351)
T TIGR03700 157 KEAGLDSMP 165 (351)
T ss_pred HHcCCCcCC
Confidence 888888764
No 381
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=59.45 E-value=2.1e+02 Score=29.27 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|........+.++ ++ +-+++.++...++|
T Consensus 183 v~~~~~a~~~a~~eTG~~~~y~~NiT~~-------------------------~~-----------~em~~ra~~~~~~G 226 (414)
T cd08206 183 ILFVAEAMDKAEAETGEAKGHYLNITAD-------------------------TP-----------EEMIKRAEFAKELG 226 (414)
T ss_pred HHHHHHHHHHHHHhhCCcceEEeccCCC-------------------------cH-----------HHHHHHHHHHHHhC
Confidence 6777888888888887654333333332 01 12234455667889
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c-c-H-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G-F-L-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~-~-l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+ + -+..+.+...+. +.|+..|-.+.- . . + ..+.=.|+|.+++
T Consensus 227 ~~~~mv~~~~~G~-~----------~l~~l~~~~~~~--~l~ih~HrA~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ih~ 293 (414)
T cd08206 227 SVIVMVDGVTAGW-T----------AIQSARRWCPDN--GLALHAHRAGHAAFTRQKNHGISMRVLAKLARLIGVDHIHT 293 (414)
T ss_pred CcEEEEeeecccH-H----------HHHHHHHhcccc--CeEEEEccccceecccCCCCcCcHHHHHHHHHHcCCCcccc
Confidence 9987443333442 1 122233322222 567777766541 1 1 2 3334469998875
Q ss_pred CC-----CCCHHHH---HHHhCCCe-----------eEEccCCcCcc--CC--CHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 316 DW-----TVDMADG---RKRLGNDI-----------SVQGNVDPACL--FS--PLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 316 d~-----~~di~~~---~~~~g~~~-----------~l~G~vd~~~L--~g--t~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.. ..+-.+. .+.+-... .-+|++.+.+. -| ++.. +.++++.+|. -+|+..|.
T Consensus 294 ~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~~----~p~~~~~~G~-Dvil~~GG 368 (414)
T cd08206 294 GTVVGKLEGDPSEVKGIADMLREDEVEGDLSRIFFNQDWGGMKPVFPVASGGLHPGR----MPALIEILGD-DVILQFGG 368 (414)
T ss_pred CCCccCCCCCHHHHHHHHHHhhcccccCCccccccccccccCCCcEEecCCccChhH----HHHHHHHhCC-ceEEecCC
Confidence 32 1233332 23222111 01667676642 21 3433 4566777774 68999998
Q ss_pred CC--CCCCcHHHHHHHHHHHHhcCCCCCCCCcccccc
Q 015201 373 GV--LVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEES 407 (411)
Q Consensus 373 ~i--~~~tp~Eni~a~~~a~~~yg~~~~~~~~~~~~~ 407 (411)
++ .|+-+-+..+|+.+++..+-+...-++.|-+.|
T Consensus 369 Gi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~ 405 (414)
T cd08206 369 GTHGHPDGPAAGAKANRQALEAWVQGRILREYAKTHK 405 (414)
T ss_pred ceecCCCChhhHHHHHHHHHHHHHhCCChHHHhhcCH
Confidence 88 356778999999998887755444444444443
No 382
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=59.19 E-value=1.4e+02 Score=27.11 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=62.0
Q ss_pred HhCCCEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcC---CCc-EE-EcC
Q 015201 246 ESGAHCIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGT---GVD-VI-GLD 316 (411)
Q Consensus 246 e~G~d~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~---g~d-~l-~~d 316 (411)
+.|+.++-+..+... ..+++ .++++++.+++. +.|+.+|..+... .+..+.+. +.. ++ |..
T Consensus 113 ~~~~~gi~~~~~~~~~~~~~~--------~~~~~~~~a~~~--~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 182 (275)
T cd01292 113 ELGAVGLKLAGPYTATGLSDE--------SLRRVLEEARKL--GLPVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVS 182 (275)
T ss_pred hcCCeeEeeCCCCCCCCCCcH--------HHHHHHHHHHHc--CCeEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCc
Confidence 357777755444432 23444 556667778876 7899999876653 24444443 222 22 332
Q ss_pred CC--CCHHHHHHHhCCCeeEEccCCcCcc--CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC--CCCcHHHHHHHHHH
Q 015201 317 WT--VDMADGRKRLGNDISVQGNVDPACL--FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL--VGTPEEAVAHFFEV 389 (411)
Q Consensus 317 ~~--~di~~~~~~~g~~~~l~G~vd~~~L--~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~--~~tp~Eni~a~~~a 389 (411)
.. -++..+++. | +.+ .+.|... .+....-...++++++.+ ...++++++... +....+.++.+...
T Consensus 183 ~~~~~~~~~~~~~-g--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~~~~~~~~~~~~~~~~~~ 254 (275)
T cd01292 183 HLDPELLELLKEA-G--VSL--EVCPLSNYLLGRDGEGAEALRRLLELG--IRVTLGTDGPPHPLGTDLLALLRLLLKV 254 (275)
T ss_pred cCCHHHHHHHHHc-C--CeE--EECCcccccccCCcCCcccHHHHHHCC--CcEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 21 123333332 2 222 2333321 110111123344454443 578899987654 23445555555543
No 383
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=59.01 E-value=2.4e+02 Score=29.81 Aligned_cols=143 Identities=11% Similarity=0.037 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCc------c-cHhHHh
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNG------G-FLERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~------~-~l~~~~ 306 (411)
+--+++++.+.+.|+|.|-++= ...||+.++ +++++.+.-.+ +..+..+. |-.. . .++...
T Consensus 23 eeKl~Ia~~L~~~GVd~IE~G~---p~~s~~d~~-----~v~~i~~~~~~---~~~i~~~~r~~r~~~~~~~d~~~ea~~ 91 (526)
T TIGR00977 23 EDKIRIAERLDDLGIHYIEGGW---PGANPKDVQ-----FFWQLKEMNFK---NAKIVAFCSTRRPHKKVEEDKMLQALI 91 (526)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCCChHHHH-----HHHHHHHhCCC---CcEEEEEeeecCCCCCCchHHHHHHHh
Confidence 4456778888999999986521 357787654 44555532111 23344454 3211 1 267788
Q ss_pred cCCCcEEEcCC-----------CCCHHHHH----------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCC
Q 015201 307 GTGVDVIGLDW-----------TVDMADGR----------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 307 e~g~d~l~~d~-----------~~di~~~~----------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~ 364 (411)
+.|.+.+++-. .++.+++. +..|.++.+ +.-+-.. ..-+++.+.+.++.+.+. +..
T Consensus 92 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~-~~e~f~D~~r~~~~~l~~~~~~a~~a-Gad 169 (526)
T TIGR00977 92 KAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIY-DAEHFFDGYKANPEYALATLATAQQA-GAD 169 (526)
T ss_pred cCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-EeeeeeecccCCHHHHHHHHHHHHhC-CCC
Confidence 88888876421 22322222 223433321 1111000 124677777777777654 333
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+.+.- ++ ..+.|+.+..+++.+++.
T Consensus 170 ~i~i~D--Tv-G~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 170 WLVLCD--TN-GGTLPHEISEITTKVKRS 195 (526)
T ss_pred eEEEec--CC-CCcCHHHHHHHHHHHHHh
Confidence 555542 22 234566677777777653
No 384
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=58.94 E-value=52 Score=31.98 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCcc--cHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGG--FLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~--~l~~~~e~g~ 310 (411)
+-.++.++++.++|||+|++. +.-++++.+++ .+.+ +.|++ +..-|... .++.+.++|+
T Consensus 166 deAI~Ra~aY~eAGAD~ifi~----~~~~~~~i~~~--------~~~~-----~~Pl~~n~~~~~~~p~~s~~~L~~lGv 228 (292)
T PRK11320 166 DAAIERAQAYVEAGADMIFPE----AMTELEMYRRF--------ADAV-----KVPILANITEFGATPLFTTEELASAGV 228 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEec----CCCCHHHHHHH--------HHhc-----CCCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 445666889999999999763 23466666554 3333 24653 32224333 3788999999
Q ss_pred cEEEcCC
Q 015201 311 DVIGLDW 317 (411)
Q Consensus 311 d~l~~d~ 317 (411)
..+++..
T Consensus 229 ~~v~~~~ 235 (292)
T PRK11320 229 AMVLYPL 235 (292)
T ss_pred cEEEECh
Confidence 9988753
No 385
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=58.87 E-value=1.9e+02 Score=28.57 Aligned_cols=142 Identities=14% Similarity=0.186 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEe--cCCC------C--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCC--cc
Q 015201 234 TQAIADYIIYQVESGAHCIQIF--DSWG------G--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGN--GG 300 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~--D~~~------~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~--~~ 300 (411)
++..+++++++.++|++.|-+. +.++ + ..++. .+.+++.+.++ +..+.... -|. ..
T Consensus 23 ~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~-------e~i~~~~~~~~----~~~~~~ll~pg~~~~~ 91 (333)
T TIGR03217 23 IEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL-------EYIEAAADVVK----RAKVAVLLLPGIGTVH 91 (333)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChH-------HHHHHHHHhCC----CCEEEEEeccCccCHH
Confidence 4566778888999999998775 2222 1 23332 34555555554 23343333 233 33
Q ss_pred cHhHHhcCCCcEEEcC-CCCCHH------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 301 FLERMKGTGVDVIGLD-WTVDMA------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 301 ~l~~~~e~g~d~l~~d-~~~di~------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
.++...+.|++.+.+- ...+.. +..+..|- -+.+++--. ..-|+|++.+.++++.+. +...+-+.- +
T Consensus 92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~--~v~~~l~~s-~~~~~e~l~~~a~~~~~~-Ga~~i~i~D--T 165 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM--DTVGFLMMS-HMTPPEKLAEQAKLMESY-GADCVYIVD--S 165 (333)
T ss_pred HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC--eEEEEEEcc-cCCCHHHHHHHHHHHHhc-CCCEEEEcc--C
Confidence 5777888999998642 222211 12233453 344444322 236899999998887664 332333322 2
Q ss_pred CCCCCcHHHHHHHHHHHHhc
Q 015201 374 VLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~y 393 (411)
. .-..|+.+..++.++++.
T Consensus 166 ~-G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 166 A-GAMLPDDVRDRVRALKAV 184 (333)
T ss_pred C-CCCCHHHHHHHHHHHHHh
Confidence 2 234567788888888764
No 386
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=58.67 E-value=1.5e+02 Score=28.37 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC----c-c--cHhHHhcCCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN----G-G--FLERMKGTGV 310 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~----~-~--~l~~~~e~g~ 310 (411)
++.++...++|+|++.+.-+.-.-.|+ +=+.-|++++++... +.|++++..-. . . .+..+.+. -
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~----~~i~~~~~~v~~a~~----~lpi~iYn~P~~tg~~l~~~~~~~L~~~-p 156 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSF----EEIKDYYREIIAAAA----SLPMIIYHIPALTGVNLTLEQFLELFEI-P 156 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCH----HHHHHHHHHHHHhcC----CCCEEEEeCccccCCCCCHHHHHHHhcC-C
Confidence 455677789999999776664433443 446778888887652 46787775432 1 1 24455553 3
Q ss_pred cEEEc-CCCCCHHH---HHHHhCCCeeEEccCCc
Q 015201 311 DVIGL-DWTVDMAD---GRKRLGNDISVQGNVDP 340 (411)
Q Consensus 311 d~l~~-d~~~di~~---~~~~~g~~~~l~G~vd~ 340 (411)
++..+ +...|+.. +.+..+++..++.|.|.
T Consensus 157 nivgiK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 190 (288)
T cd00954 157 NVIGVKFTATDLYDLERIRAASPEDKLVLNGFDE 190 (288)
T ss_pred CEEEEEeCCCCHHHHHHHHHhCCCCcEEEEechH
Confidence 55554 33335444 44445545666666665
No 387
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=58.32 E-value=1.2e+02 Score=30.13 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHHHH---HH------HHHHHHHHHHHHHhhCC-CCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHMWE---QW------SEPYIREIVSLVRTKCP-ETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~f~---ef------~~Py~k~i~~~i~~~~~-g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||..=+ || =.-+..++++.+++..| +.++.+-+
T Consensus 132 I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi 211 (353)
T cd02930 132 IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRL 211 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEe
Confidence 334444455566777889999998865333 377774210 11 13334566666666542 44444333
Q ss_pred c-------CCc-c----cHhHHhcCCCcEEEc
Q 015201 296 N-------GNG-G----FLERMKGTGVDVIGL 315 (411)
Q Consensus 296 C-------G~~-~----~l~~~~e~g~d~l~~ 315 (411)
. |.. . +.+.+.+.|+|.+++
T Consensus 212 ~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 212 SMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2 221 1 236677789999977
No 388
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=57.69 E-value=1.1e+02 Score=29.44 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCc----E--EEcCCCCCHHH---HHHHhCCCeeEEccCCcCccC
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVD----V--IGLDWTVDMAD---GRKRLGNDISVQGNVDPACLF 344 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d----~--l~~d~~~di~~---~~~~~g~~~~l~G~vd~~~L~ 344 (411)
-.++|++.+.++ + +++..||+ ..+++.+.|+. . +++.+.+.... +.-+. -.++||+.|
T Consensus 142 ~~~~I~~e~q~r--~--~lv~l~G~--i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiRa---AliFggv~p---- 208 (287)
T cd01917 142 ALKKIVDDLMGR--G--FMLFLCDE--IVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALRA---GLMFGGIEP---- 208 (287)
T ss_pred HHHHHHHHHHHC--C--cEEEEecH--HHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHHH---HHHhCCCCC----
Confidence 456788888876 3 67889995 44666665533 2 24443332211 12222 246788887
Q ss_pred CCHHHHHHHHHHHHHHh
Q 015201 345 SPLPALTDEIQRVVKCA 361 (411)
Q Consensus 345 gt~eeV~~ev~~~i~~~ 361 (411)
|+-+++.+++++.+..+
T Consensus 209 Gn~~ei~dY~~nRV~Af 225 (287)
T cd01917 209 GKREEIRDYQRRRVRAF 225 (287)
T ss_pred cCHHHHHHHHHhhcCEE
Confidence 89999999998876643
No 389
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=57.58 E-value=1.7e+02 Score=30.69 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
.+.++..++.|++.|++-+.. .+.+.+.+ ..+++.+..+++ ++++++|. .++.-.+.|.|++|+..
T Consensus 310 ~~~l~~~l~~Gv~~vqlR~k~---~~~~~~~~----~a~~l~~~~~~~--~~~liind-----~~~lA~~~~adGvHl~~ 375 (502)
T PLN02898 310 VDAVRAAIEGGATIVQLREKE---AETREFIE----EAKACLAICRSY--GVPLLIND-----RVDVALACDADGVHLGQ 375 (502)
T ss_pred HHHHHHHHHcCCCEEEEccCC---CCHHHHHH----HHHHHHHHHHHh--CCEEEEcC-----hHHHHHhcCCCEEEeCh
Confidence 455777889999999886532 34444433 344566666665 67777764 35666678999998854
Q ss_pred -CCCHHHHHHHhCCC
Q 015201 318 -TVDMADGRKRLGND 331 (411)
Q Consensus 318 -~~di~~~~~~~g~~ 331 (411)
..+..++++.++.+
T Consensus 376 ~d~~~~~~r~~~~~~ 390 (502)
T PLN02898 376 SDMPVRLARSLLGPG 390 (502)
T ss_pred HhcCHHHHHHhcCCC
Confidence 34567777766543
No 390
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=57.33 E-value=2.3e+02 Score=28.97 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++.. .+++.++...++|
T Consensus 190 v~~~~~a~~~a~~eTG~~~~y~~NiT~~~~-------------------------------------em~~ra~~a~~~G 232 (407)
T TIGR03332 190 ITEGKEVLQEVYEQTGHKTLYAVNLTGRTF-------------------------------------DLKDKAKRAAELG 232 (407)
T ss_pred HHHHHHHHHHHHHHHCCcceEeecCCCCHH-------------------------------------HHHHHHHHHHHhC
Confidence 677788888888998865544444443211 1224455667899
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-----------c-c-H-hHHhcCCCcEEE
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-----------G-F-L-ERMKGTGVDVIG 314 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-----------~-~-l-~~~~e~g~d~l~ 314 (411)
++.+.+.-.+.|+=.. +.+.+. .+. +.|+..|-.+.- . . + ..+.=.|+|.++
T Consensus 233 ~~~~mv~~~~~G~~~~-----------~~l~~~-~~~--~lpihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~ 298 (407)
T TIGR03332 233 ADVLLFNVFAYGLDVL-----------QSLAED-DEI--PVPIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSL 298 (407)
T ss_pred CCEEEEeccccChHHH-----------HHHHhc-CCC--CcEEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCccc
Confidence 9988543344453222 222221 111 466666665431 1 1 2 233346899886
Q ss_pred cCC-----CCCHHH---HHHHhCCCeeEEccCCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcH
Q 015201 315 LDW-----TVDMAD---GRKRLGNDISVQGNVDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPE 380 (411)
Q Consensus 315 ~d~-----~~di~~---~~~~~g~~~~l~G~vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~ 380 (411)
+.. ..+-++ +.+.+-.. +|++.+.+. - | ++.. +.++++.+|. -+|+..|.++ .|+-+-
T Consensus 299 ~~~~~Gk~~~~~~~~~~~~~~~~~p---~~~~k~~~Pv~sGG~~~~~----~p~~~~~~G~-Dvil~~GGGi~gHP~G~~ 370 (407)
T TIGR03332 299 FPSPYGSVALEREDALAISKELTED---DAPFKKTFAVPSAGIHPGM----VPLIMRDFGI-DHIINAGGGIHGHPNGAQ 370 (407)
T ss_pred cCCcccCCCCCHHHHHHHHHHHhcc---ccCCCccEEecCCCcChhH----HHHHHHHhCC-ceEEecCcccccCCCCch
Confidence 532 123333 33333222 456666542 1 1 3333 3556667774 5888888887 356778
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccc
Q 015201 381 EAVAHFFEVGKSMKYDNSSQNHVFEES 407 (411)
Q Consensus 381 Eni~a~~~a~~~yg~~~~~~~~~~~~~ 407 (411)
+..+||.+++...-..-.-++.+.+.|
T Consensus 371 aGa~A~rqA~ea~~~g~~l~~~a~~~~ 397 (407)
T TIGR03332 371 GGGRAFRAAIDAVLEAKPLHEKAADDI 397 (407)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHhhcCH
Confidence 899999988887654434444444443
No 391
>PRK08999 hypothetical protein; Provisional
Probab=57.22 E-value=1.9e+02 Score=27.94 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC-
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW- 317 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~- 317 (411)
+.+++.++.|++.|++-+.. .+.+.+.++ .+++.+.++++ ++++++|. .++...+.|+|++|+..
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~---~~~~~~~~~----~~~l~~~~~~~--~~~liind-----~~~la~~~~~~GvHl~~~ 213 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQ---LPPAAYRAL----ARAALGLCRRA--GAQLLLNG-----DPELAEDLGADGVHLTSA 213 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCC---CCHHHHHHH----HHHHHHHHHHh--CCEEEEEC-----cHHHHHhcCCCEEEcChh
Confidence 45556778999999887653 345444443 34455555655 67788874 46667778999999864
Q ss_pred CCCHHHHHHHhCC
Q 015201 318 TVDMADGRKRLGN 330 (411)
Q Consensus 318 ~~di~~~~~~~g~ 330 (411)
..+..++++ ++.
T Consensus 214 d~~~~~~r~-~~~ 225 (312)
T PRK08999 214 QLAALAARP-LPA 225 (312)
T ss_pred hcChHhhcc-CCC
Confidence 234444444 443
No 392
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.13 E-value=1.9e+02 Score=27.90 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.++...++|+|++.+.-+.-.-.++ +=+.-|++++++... +.|+++...
T Consensus 86 i~la~~a~~~Gad~v~v~~P~y~~~~~----~~i~~yf~~v~~~~~----~lpv~lYn~ 136 (290)
T TIGR00683 86 VELGKYATELGYDCLSAVTPFYYKFSF----PEIKHYYDTIIAETG----GLNMIVYSI 136 (290)
T ss_pred HHHHHHHHHhCCCEEEEeCCcCCCCCH----HHHHHHHHHHHhhCC----CCCEEEEeC
Confidence 566677778899998776554333343 446677777776542 356665543
No 393
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=57.00 E-value=60 Score=31.41 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCcc--cHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGG--FLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~--~l~~~~e~g~ 310 (411)
+-.++.++++.++|||+|++. +.-|+++.+ ++.+.+. .|++ +..-|... .++.+.++|+
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~----g~~~~e~i~--------~~~~~i~-----~Pl~~n~~~~~~~p~~s~~eL~~lGv 223 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPE----ALTSLEEFR--------QFAKAVK-----VPLLANMTEFGKTPLFTADELREAGY 223 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeC----CCCCHHHHH--------HHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCC
Confidence 345667889999999999773 244666544 3444442 4653 32224433 3788999999
Q ss_pred cEEEcCC
Q 015201 311 DVIGLDW 317 (411)
Q Consensus 311 d~l~~d~ 317 (411)
+.+++..
T Consensus 224 ~~v~~~~ 230 (285)
T TIGR02317 224 KMVIYPV 230 (285)
T ss_pred cEEEEch
Confidence 9988753
No 394
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.95 E-value=1.2e+02 Score=25.62 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
++++..+.++|.|.++...+ -..+..+++++.+++++.+ .+.+-..|... ..+.+.++|+|.+- ..
T Consensus 45 ~v~aa~e~~adii~iSsl~~----------~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gvd~~~-~~ 112 (132)
T TIGR00640 45 IARQAVEADVHVVGVSSLAG----------GHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGVAEIF-GP 112 (132)
T ss_pred HHHHHHHcCCCEEEEcCchh----------hhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCCCEEE-CC
Confidence 55566788999987643222 2344567888888887432 23344566554 47889999998852 22
Q ss_pred CCCHHHHHH
Q 015201 318 TVDMADGRK 326 (411)
Q Consensus 318 ~~di~~~~~ 326 (411)
..++.+..+
T Consensus 113 gt~~~~i~~ 121 (132)
T TIGR00640 113 GTPIPESAI 121 (132)
T ss_pred CCCHHHHHH
Confidence 335555443
No 395
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=56.60 E-value=73 Score=31.58 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHhcC--CCcEEEcCCCC--------CHHHHHH
Q 015201 261 QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMKGT--GVDVIGLDWTV--------DMADGRK 326 (411)
Q Consensus 261 ~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~e~--g~d~l~~d~~~--------di~~~~~ 326 (411)
+++++.|.+|+....+ +. +..+.+ +-|-.. .++.+.+. ++|.+.+|... +++.+|+
T Consensus 77 ~~~~e~~~~~v~~~~~-------~~--~~~~~v-svG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 77 HYSVDEWKAFATNSSP-------DC--LQNVAV-SSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred CCCHHHHHHHHHhhcc-------cc--cceEEE-EeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 5899999998764333 11 112333 434321 46777776 59999876421 5888999
Q ss_pred HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEe--CC--CCC--CCCCcHHHHHHHHHHHHhcC
Q 015201 327 RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILN--LG--HGV--LVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls--~g--c~i--~~~tp~Eni~a~~~a~~~yg 394 (411)
.+++...+.|||- |+|.. +++++.+.+ +.+++ || |+- -.+++.-.+.|+.++++.-+
T Consensus 147 ~~p~~~viaGNV~------T~e~a----~~Li~aGAD-~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~ 209 (343)
T TIGR01305 147 AFPEHTIMAGNVV------TGEMV----EELILSGAD-IVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAH 209 (343)
T ss_pred hCCCCeEEEeccc------CHHHH----HHHHHcCCC-EEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhc
Confidence 9998888899885 45544 466665444 56655 33 442 23444335666665555443
No 396
>PRK10508 hypothetical protein; Provisional
Probab=56.59 E-value=15 Score=36.33 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 343 LFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 343 L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+.||||+|.+..+++.+..+-..+++.+.+ .+...-.++++.+.+++++
T Consensus 284 ivGtpe~V~~kl~~l~~~~g~del~~~~~~-~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 284 LVGDKAKVRHGLQSILRETQADEIMVNGQI-FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EEeCHHHHHHHHHHHHHHHCcCEEEEECCC-CCHHHHHHHHHHHHHHhhh
Confidence 459999999999999999976788877765 5656667777777777665
No 397
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=56.33 E-value=18 Score=35.26 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=42.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
-++..+++|+|.|.+ | -|||++.++.+. .+++ .+.+=..|+++ .+..+.++|+|+++...
T Consensus 220 ea~ea~~~gaDiI~L-D----n~s~e~~~~av~--------~~~~-----~~~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 220 ELDQALKAGADIIML-D----NFTTEQMREAVK--------RTNG-----RALLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHcCCCEEEe-C----CCChHHHHHHHH--------hhcC-----CeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 345556789998843 3 477877766553 2332 25677888887 59999999999998753
No 398
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=56.29 E-value=37 Score=37.40 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH-hH--HhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL-ER--MKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l-~~--~~e~g 309 (411)
.++....++.+.++|++.+-+ -|++|++-|.- -++++.++++.. ++|+-+|.+.... -+ -+ -.+.|
T Consensus 693 L~YY~~lA~el~~~GaHIlaI-KDMAGLLKP~A--------A~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AG 762 (1149)
T COG1038 693 LDYYVKLAKELEKAGAHILAI-KDMAGLLKPAA--------AYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAG 762 (1149)
T ss_pred HHHHHHHHHHHHhcCCcEEEe-hhhhhccCHHH--------HHHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcC
Confidence 345555666777788887755 56777787754 346778888887 8999999987654 23 33 34679
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
+|++.
T Consensus 763 vDivD 767 (1149)
T COG1038 763 VDIVD 767 (1149)
T ss_pred Cchhh
Confidence 99873
No 399
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=56.26 E-value=83 Score=30.94 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=50.7
Q ss_pred hhCHHHHHHHHHHHHHH----------------------HHHHHHHHHHhCCCEEEEecCCCC--------------CCC
Q 015201 220 HTAPHVLRTLLSHLTQA----------------------IADYIIYQVESGAHCIQIFDSWGG--------------QLP 263 (411)
Q Consensus 220 ~~~Pe~v~~ll~~~~d~----------------------~~~~~~~~~e~G~d~i~i~D~~~~--------------~iS 263 (411)
.++|+.+.++++.+.+. ..+.++++.++|+|+|.+...+.+ -+|
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 45777777776665443 345667778899999987764321 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 264 PHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 264 p~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
-.. ++|...+.+..+++..+ ++|++ .||.+. ....+...|+|.+.+.
T Consensus 259 G~~----~~~~~l~~v~~l~~~~~~~ipIi--~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 259 GAP----LKERSTEVLRELYKLTGGKIPII--GVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred Chh----hhHHHHHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHcCCCHHhcc
Confidence 221 22233334444444321 35644 577664 2444445899887653
No 400
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=56.17 E-value=69 Score=31.78 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=50.9
Q ss_pred hhCHHHHHHHHHHHHHH----------------------HHHHHHHHHHhCCCEEEEecCCC--------------CCCC
Q 015201 220 HTAPHVLRTLLSHLTQA----------------------IADYIIYQVESGAHCIQIFDSWG--------------GQLP 263 (411)
Q Consensus 220 ~~~Pe~v~~ll~~~~d~----------------------~~~~~~~~~e~G~d~i~i~D~~~--------------~~iS 263 (411)
.++|+.+.++++.+.+. +.+.++++.++|+|+|.+...+. +-+|
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S 267 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS 267 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc
Confidence 45777777777766554 34566777789999998886532 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEc
Q 015201 264 PHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGL 315 (411)
Q Consensus 264 p~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~ 315 (411)
-.--....+.+.+++.+.+. +++|++ .||.+. ....+...|+|.+.+
T Consensus 268 G~~~~~~~l~~v~~l~~~~~---~~ipIi--g~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 268 GRPLFERSTEVIRRLYKELG---GRLPII--GVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred cHHHHHHHHHHHHHHHHHhC---CCCCEE--EECCCCCHHHHHHHHHcCCCHHHH
Confidence 22222233334444443332 145644 566654 244444578887654
No 401
>PRK15447 putative protease; Provisional
Probab=55.98 E-value=46 Score=32.37 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe------cCCcccHhHHhcCCCcE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI------NGNGGFLERMKGTGVDV 312 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~------CG~~~~l~~~~e~g~d~ 312 (411)
.+..+..+.|||.|+++....+.=+ .|...-++++++.+|++ |+.+++-. ..+...+..+.+.|.+.
T Consensus 19 ~~~~~~~~~gaDaVY~g~~~~~~R~-----~f~~~~l~e~v~~~~~~--gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~ 91 (301)
T PRK15447 19 DFYQRAADSPVDIVYLGETVCSKRR-----ELKVGDWLELAERLAAA--GKEVVLSTLALVEAPSELKELRRLVENGEFL 91 (301)
T ss_pred HHHHHHHcCCCCEEEECCccCCCcc-----CCCHHHHHHHHHHHHHc--CCEEEEEecccccCHHHHHHHHHHHhcCCCE
Confidence 4455666789999999865544211 45666777788899987 55544322 22222355566677776
Q ss_pred EEcCCCCCHHHHHH
Q 015201 313 IGLDWTVDMADGRK 326 (411)
Q Consensus 313 l~~d~~~di~~~~~ 326 (411)
+-+.+.--+.-+++
T Consensus 92 v~v~d~g~l~~~~e 105 (301)
T PRK15447 92 VEANDLGAVRLLAE 105 (301)
T ss_pred EEEeCHHHHHHHHh
Confidence 55432212334444
No 402
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=55.90 E-value=84 Score=30.05 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=55.0
Q ss_pred HhhCHHHHHHHHHHHHHH-----------------HHHHHHHHHHhCCCEEEEecCCCC-----------------CCCH
Q 015201 219 CHTAPHVLRTLLSHLTQA-----------------IADYIIYQVESGAHCIQIFDSWGG-----------------QLPP 264 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~-----------------~~~~~~~~~e~G~d~i~i~D~~~~-----------------~iSp 264 (411)
+..+|+.+.++++.+.+. ..+.++.+.++|+|+|.+...+.+ -+|.
T Consensus 143 ~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg 222 (289)
T cd02810 143 LGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG 222 (289)
T ss_pred cccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCc
Confidence 456788887777766654 356677788999999987654321 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 265 HMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 265 ~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
. .+.|...+.+..+++..+ ++|++ .+|.+. .+..+...|+|.+.+.
T Consensus 223 ~----~~~~~~~~~v~~i~~~~~~~ipii--a~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 223 A----PIRPLALRWVARLAARLQLDIPII--GVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred H----HHHHHHHHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCccHheEc
Confidence 1 233444455555554432 45643 455543 3555666899988764
No 403
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=55.72 E-value=70 Score=31.44 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHH-HHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHH------------
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATY-IVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA------------ 236 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~-l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~------------ 236 (411)
....++++.+.+ .+-+. +=-.+++|...... -.| ..|.++|+.+.++++.+.+.
T Consensus 67 ~~~~~aA~~~~~-~g~d~-IDlN~GCP~~~v~~~g~G-----------s~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 67 NDLAKCAKIAEK-RGYDE-INLNVGCPSDRVQNGNFG-----------ACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred HHHHHHHHHHHh-CCCCE-EEEECCCCHHHhCCCCee-----------hHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 345566666654 33121 33456778765432 112 25677999998888877653
Q ss_pred ---------HHHHHHHHHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHH
Q 015201 237 ---------IADYIIYQVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERM 305 (411)
Q Consensus 237 ---------~~~~~~~~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~ 305 (411)
.+++++.+.++|++.|.++--.. ..+|++.-+ ...|..-+.+..+++..+.+|++ ..|++...++.
T Consensus 134 ~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~-~~~~~~~~~i~~vk~~~~~ipVi--~NGdI~s~~da 210 (318)
T TIGR00742 134 IDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENR-EIPPLRYERVYQLKKDFPHLTIE--INGGIKNSEQI 210 (318)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccc-cCCchhHHHHHHHHHhCCCCcEE--EECCcCCHHHH
Confidence 34567777789999998876542 234433200 01111111222344332356755 57887644333
Q ss_pred hc--CCCcEEEcC
Q 015201 306 KG--TGVDVIGLD 316 (411)
Q Consensus 306 ~e--~g~d~l~~d 316 (411)
.+ .|+|++.+.
T Consensus 211 ~~~l~g~dgVMig 223 (318)
T TIGR00742 211 KQHLSHVDGVMVG 223 (318)
T ss_pred HHHHhCCCEEEEC
Confidence 33 289998764
No 404
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=55.68 E-value=1.5e+02 Score=26.49 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC-
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW- 317 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~- 317 (411)
++++...++|+|++.+... . .... .+..++.. +. .+--+|.+..-+....+.|+|.+.++.
T Consensus 72 ~~~~~a~~~gad~vh~~~~--~-~~~~------------~~~~~~~~--~~-~~g~~~~t~~e~~~a~~~gaD~v~~~~~ 133 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQD--D-LPVA------------DARALLGP--DA-IIGLSTHTLEEAAAALAAGADYVGVGPI 133 (212)
T ss_pred ChHHHHHHcCCCEEecCcc--c-CCHH------------HHHHHcCC--CC-EEEEeCCCHHHHHHHhHcCCCEEEECCc
Confidence 3556778899999865321 1 1111 12333333 33 233455543334444467999986421
Q ss_pred --C---------C---CHHHHHHHhC-CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHH
Q 015201 318 --T---------V---DMADGRKRLG-NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEE 381 (411)
Q Consensus 318 --~---------~---di~~~~~~~g-~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~E 381 (411)
. . .+.++++.++ -.+...|||++ +.++++++. |-.+++++++ + ...-|.+
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~-----------~~i~~~~~~-Ga~gv~~gs~--i~~~~d~~~ 199 (212)
T PRK00043 134 FPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITP-----------ENAPEVLEA-GADGVAVVSA--ITGAEDPEA 199 (212)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCH-----------HHHHHHHHc-CCCEEEEeHH--hhcCCCHHH
Confidence 1 1 1444555554 45667788865 345555554 3346666543 3 2334667
Q ss_pred HHHHHHHHHHh
Q 015201 382 AVAHFFEVGKS 392 (411)
Q Consensus 382 ni~a~~~a~~~ 392 (411)
.++.+.+..++
T Consensus 200 ~~~~l~~~~~~ 210 (212)
T PRK00043 200 AARALLAAFRA 210 (212)
T ss_pred HHHHHHHHHhh
Confidence 77777665543
No 405
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=55.44 E-value=1e+02 Score=33.45 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE--EEcC-CCCCHH---HHHHHhCCCeeEEccCCcCccCCC
Q 015201 275 IREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV--IGLD-WTVDMA---DGRKRLGNDISVQGNVDPACLFSP 346 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~--l~~d-~~~di~---~~~~~~g~~~~l~G~vd~~~L~gt 346 (411)
.++|++.+.++ + +++..||... +.+.....|.|. +++. +.+... .+.-+. -.++||+.| |+
T Consensus 151 a~~Ia~Elq~r--~--~lvfl~G~l~EQl~e~gvk~G~~~~lvp~G~~~ts~vHa~g~AiRa---AliFGgv~p----Gd 219 (711)
T PRK09529 151 AKKIIKELQKK--N--LLTFLCGEVIEQLIEAGVKLGLDYRLVPLGDDITSAIHAANFAIRA---ALIFGGVEP----GD 219 (711)
T ss_pred HHHHHHHHHHC--C--cEEEEcCcHHHHhhhcccccccceeEEecCCchhhHHHHHHHHHHH---HHHhcCCCC----cC
Confidence 56788888876 3 5778888632 234444455544 3555 333221 122222 246788886 88
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCCCCCCCcc
Q 015201 347 LPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHV 403 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~~~~~ 403 (411)
-+++.+++++.+..+ +++-| .=.+...|.-..+..+|-+-+.-.+.
T Consensus 220 ~~ei~dY~~nRV~Af-----ViA~G------~~s~~~~A~aaGai~~GfPVItd~~~ 265 (711)
T PRK09529 220 YEELLDYTKERVPAF-----VNALG------ELDDEWVAAAAGAINLGFPVITDQDV 265 (711)
T ss_pred HHHHHHHHHhhccEE-----EEeec------ccCHHHHHHHhhHHhcCCcEeeCCCC
Confidence 999999988776543 33333 11233444445555555544444433
No 406
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=55.14 E-value=2.1e+02 Score=27.88 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHH-------------
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA------------- 236 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~------------- 236 (411)
..+.++++++++ .|-+. +=-.+++|......-.+| ..+..+|+.+.++++.+.+.
T Consensus 75 ~~~~~aa~~~~~-~G~d~-IelN~gcP~~~~~~~~~G----------s~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~ 142 (319)
T TIGR00737 75 DTMAEAAKINEE-LGADI-IDINMGCPVPKITKKGAG----------SALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGW 142 (319)
T ss_pred HHHHHHHHHHHh-CCCCE-EEEECCCCHHHhcCCCcc----------chHhCCHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 456677776654 33222 333567785433321122 24567888888888877542
Q ss_pred ------HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHH-
Q 015201 237 ------IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERM- 305 (411)
Q Consensus 237 ------~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~- 305 (411)
..++++.+.++|+|.|.++.... ...+. |..-+.+..+++.. ++|+ ..+|.+. .+..+
T Consensus 143 ~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~--------~~~~~~i~~i~~~~-~ipv--i~nGgI~~~~da~~~l 211 (319)
T TIGR00737 143 DDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSG--------EANWDIIARVKQAV-RIPV--IGNGDIFSPEDAKAML 211 (319)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEEEcccccccCCC--------chhHHHHHHHHHcC-CCcE--EEeCCCCCHHHHHHHH
Confidence 45667777889999998764221 12222 22233344444432 4564 4677764 34444
Q ss_pred hcCCCcEEEcC
Q 015201 306 KGTGVDVIGLD 316 (411)
Q Consensus 306 ~e~g~d~l~~d 316 (411)
...|+|++.+.
T Consensus 212 ~~~gad~Vmig 222 (319)
T TIGR00737 212 ETTGCDGVMIG 222 (319)
T ss_pred HhhCCCEEEEC
Confidence 46899999774
No 407
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=55.07 E-value=2.1e+02 Score=28.09 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=78.7
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHH---HHHHhhCC-C--
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIV---SLVRTKCP-E-- 288 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~---~~i~~~~~-g-- 288 (411)
.++.++||.|++ .-+.++++|||.|.-..=.++ -+.....++-...++++.+ +..+++.+ .
T Consensus 46 ~~~~s~Pe~V~~-----------~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~ 114 (317)
T KOG1579|consen 46 EALASNPEAVEQ-----------VHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETG 114 (317)
T ss_pred hhhccChHHHHH-----------HHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 355666765554 455778999999865442332 2222244444555555433 33333221 0
Q ss_pred ------CCEEEEecC------Cc-------------c-cHhHHhcCCCcEEEcCCCCCHHHHHHH------h-C-CCeeE
Q 015201 289 ------TPIVLYING------NG-------------G-FLERMKGTGVDVIGLDWTVDMADGRKR------L-G-NDISV 334 (411)
Q Consensus 289 ------~~~~~H~CG------~~-------------~-~l~~~~e~g~d~l~~d~~~di~~~~~~------~-g-~~~~l 334 (411)
-|.--|.+| .. . .++.+.+.|+|.|.++.-.+..|++-. + . ....+
T Consensus 115 ~v~gsiGp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~~~~~p~~i 194 (317)
T KOG1579|consen 115 YVAGSIGPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQELGPSKPFWI 194 (317)
T ss_pred eeeeecccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhcCCCCcEEE
Confidence 022223331 11 0 134566789999988766666555422 2 2 24556
Q ss_pred EccCCcCc-c-CCC-HHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHH
Q 015201 335 QGNVDPAC-L-FSP-LPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAV 383 (411)
Q Consensus 335 ~G~vd~~~-L-~gt-~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni 383 (411)
.+.+.... + .|+ -|++.. .++.. .+-..++..|..|+.+.+--.
T Consensus 195 s~t~~d~g~l~~G~t~e~~~~----~~~~~-~~~~~IGvNC~~~~~~~~~~~ 241 (317)
T KOG1579|consen 195 SFTIKDEGRLRSGETGEEAAQ----LLKDG-INLLGIGVNCVSPNFVEPLLK 241 (317)
T ss_pred EEEecCCCcccCCCcHHHHHH----HhccC-CceEEEEeccCCchhccHHHH
Confidence 66666653 4 343 344333 22221 136888999988877655433
No 408
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=54.88 E-value=2.1e+02 Score=27.73 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhH--HhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLER--MKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~--~~e~g~d~l~~ 315 (411)
..-++.+.++|+|.| | -...++| ..+++..+|..+ +. .+.||..++=|. -.+.|+|.+..
T Consensus 79 ~~Ea~~L~~~GvDiI---D-eTe~lrP----------ade~~~~~K~~f-~v---pfmad~~~l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 79 FVEAQILEALGVDYI---D-ESEVLTP----------ADWTFHIDKKKF-KV---PFVCGARDLGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHcCCCEE---E-ccCCCCc----------HHHHHHHHHHHc-CC---CEEccCCCHHHHHHHHHCCCCEEec
Confidence 344567778999987 4 2236777 244566666654 44 456776554333 33568888854
No 409
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=54.79 E-value=2.6e+02 Score=28.78 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++ ++ ++ ++.++...++|
T Consensus 211 v~~~~~ai~~a~~eTG~~~~ya~NiT~~--------------------------~~---em--------~~ra~~a~~~G 253 (424)
T cd08208 211 AALLGKARRRAEAETGVPKIYLANITDE--------------------------VD---RL--------MELHDVAVRNG 253 (424)
T ss_pred HHHHHHHHHHHHHhhCCcceEEEEccCC--------------------------HH---HH--------HHHHHHHHHhC
Confidence 6777888999999988655333444332 11 11 12344556789
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c-c-H-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G-F-L-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~-~-l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+=. ++.+.+ .. +.|+..|-.+.- . . + ..+.=.|+|.+++
T Consensus 254 ~~~vmv~~~~~G~~a-----------l~~L~~----~~-~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~ 317 (424)
T cd08208 254 ANALLINAMPVGLSA-----------VRMLRK----HA-QVPLIAHFPFIASFSRLEKYGIHSRVMTKLQRLAGLDVVIM 317 (424)
T ss_pred CCEEEEeeecccHHH-----------HHHHHh----cC-CCeEEeccCccccccCCCCCCCcHHHHHHHHHHcCCCeeec
Confidence 998744334445311 122222 21 456666654321 1 1 2 3344469999976
Q ss_pred CC-----CCCHHHHHHHhCCCeeEEccCCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcHHHHH
Q 015201 316 DW-----TVDMADGRKRLGNDISVQGNVDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPEEAVA 384 (411)
Q Consensus 316 d~-----~~di~~~~~~~g~~~~l~G~vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~Eni~ 384 (411)
.. ...-+++.+....-..-+|++.+.+. - | ++.. +-++++.+|+.-.|+..|.++ -|+-+-+..+
T Consensus 318 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~SGG~~~~~----~p~~~~~~G~~Dvil~~GGGi~gHP~G~aaGa~ 393 (424)
T cd08208 318 PGFGPRMMTPEEEVLECVIACLEPMGPIKPCLPVPGGSDSALT----LQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAK 393 (424)
T ss_pred cCCCCCccchHHHHHHHHHHHhCcccCCCCceEecccCCCHhH----HHHHHHHhCCCCEEEecCccccCCCCChHHHHH
Confidence 32 12223332222111112677777652 2 2 3433 355667777546899999888 3677788899
Q ss_pred HHHHHHHhcCC
Q 015201 385 HFFEVGKSMKY 395 (411)
Q Consensus 385 a~~~a~~~yg~ 395 (411)
|+.+++...-.
T Consensus 394 A~RqA~ea~~~ 404 (424)
T cd08208 394 SIRQAWEAIEA 404 (424)
T ss_pred HHHHHHHHHHc
Confidence 99887776543
No 410
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=54.53 E-value=1e+02 Score=28.88 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK 285 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~ 285 (411)
.+|++.+.++|+|.|.++--.. +...++++.+++.
T Consensus 81 ~~~i~~~~~aGad~It~H~Ea~-------------~~~~~~l~~Ik~~ 115 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQVEQT-------------HDLALTIEWLAKQ 115 (228)
T ss_pred HHHHHHHHHhCCCEEEEcccCc-------------ccHHHHHHHHHHC
Confidence 3788888888888887653321 3456677888877
No 411
>PRK10425 DNase TatD; Provisional
Probab=54.53 E-value=75 Score=30.17 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcC--CC--cEEEcCCCCCHHHHHHHhC--CCeeEEccCCcCccC
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGT--GV--DVIGLDWTVDMADGRKRLG--NDISVQGNVDPACLF 344 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~--g~--d~l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~L~ 344 (411)
...+++.++.+++. +.|+++|+.+... .++.+.+. .. -++|+-. -+...+++.+. -.+.|.|.+ ..
T Consensus 107 ~~vF~~ql~lA~~~--~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fs-G~~~~~~~~l~~G~~~si~g~i----~~ 179 (258)
T PRK10425 107 ERAFVAQLAIAAEL--NMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFT-GTREEMQACLARGLYIGITGWV----CD 179 (258)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecC-CCHHHHHHHHHCCCEEEECcee----ec
Confidence 35556667777776 7899999998887 56777653 11 2455522 25666666543 223333322 21
Q ss_pred -CCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-C----------CCcHHHHHHHHHHHHhcCC
Q 015201 345 -SPLPALTDEIQRVVKCAGSRGHILNLGHGVL-V----------GTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 345 -gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-~----------~tp~Eni~a~~~a~~~yg~ 395 (411)
....+++ ++++...-.++++-|+.... | -..|.++...++.+.+...
T Consensus 180 ~~~~~~~~----~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~l~~ 238 (258)
T PRK10425 180 ERRGLELR----ELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAHWRG 238 (258)
T ss_pred ccccHHHH----HHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHC
Confidence 2233444 44444433577788776532 1 1247778888777776543
No 412
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=54.47 E-value=1.1e+02 Score=28.85 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc------------------
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG------------------ 299 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~------------------ 299 (411)
.+.++.++++|+++|.+-|.. + +.+.++.+++. +++++-|++-..
T Consensus 92 ~~~~~~l~~aGa~gv~iED~~----------~-----~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 92 FELAKTFMRAGAAGVKIEGGE----------W-----HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHHHHcCCcEEEEcCcH----------H-----HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 445567788999999886641 1 22345666666 578888887421
Q ss_pred --ccH---hHHhcCCCcEEEcCCCCCHHHHHHH
Q 015201 300 --GFL---ERMKGTGVDVIGLDWTVDMADGRKR 327 (411)
Q Consensus 300 --~~l---~~~~e~g~d~l~~d~~~di~~~~~~ 327 (411)
..| ..+.+.|+|++-++.. +.+.+++.
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i 186 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV-PVELAKQI 186 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHH
Confidence 012 2344678888777633 65555543
No 413
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=54.42 E-value=45 Score=33.31 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC--
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD-- 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d-- 316 (411)
+.++.++++|+|.|++--.-+. | +++. +.++.+++..|+++++.=++....-..++.+.|+|++-+.
T Consensus 111 er~~~L~~agvD~ivID~a~g~--s-----~~~~----~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVIDSAHGH--S-----EHVI----DMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHTT-SEEEEE-SSTT--S-----HHHH----HHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHcCCCEEEccccCcc--H-----HHHH----HHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEecc
Confidence 4566788899999866323322 2 2222 2355666666566665433333334688999999998442
Q ss_pred C---C----------------CCHHHHHHHhCCCeeEEccCCc
Q 015201 317 W---T----------------VDMADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 317 ~---~----------------~di~~~~~~~g~~~~l~G~vd~ 340 (411)
. + .+..++++.++-.++-=|||..
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~ 222 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRT 222 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SS
T ss_pred CCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCc
Confidence 1 1 1456667767655555566654
No 414
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=54.30 E-value=80 Score=29.61 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccH---hHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFL---ERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l---~~~~e~g~d~l~ 314 (411)
++.++.+-+.|||-+.+.|=.++--. |+-.+...++..+.+ .+| +-.-|.+.-+ ..+...|+|-+|
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~g----r~~~~~vv~r~A~~v-----fiP--ltVGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSEG----RETMLDVVERVAEQV-----FIP--LTVGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccccccc----chhHHHHHHHHHhhc-----eee--eEecCCcCCHHHHHHHHHcCCCeee
Confidence 46677888999999988885554222 455555556666555 244 3445666544 556668999998
Q ss_pred cCCC--CC---HHHHHHHhCCCeeEEccCCcCc----------c--C-C---CHHHHHHHHHHHHHHhCCCCeEEeCC--
Q 015201 315 LDWT--VD---MADGRKRLGNDISVQGNVDPAC----------L--F-S---PLPALTDEIQRVVKCAGSRGHILNLG-- 371 (411)
Q Consensus 315 ~d~~--~d---i~~~~~~~g~~~~l~G~vd~~~----------L--~-g---t~eeV~~ev~~~i~~~~~~gfIls~g-- 371 (411)
+... .| +.++.++||.+ |+...||... . + | |.=+..+-++++-+. |.|-..|++=
T Consensus 102 INsaAv~~p~lI~~~a~~FGsQ-ciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~-GAGEIlLtsmD~ 179 (256)
T COG0107 102 INSAAVKDPELITEAADRFGSQ-CIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEEL-GAGEILLTSMDR 179 (256)
T ss_pred eChhHhcChHHHHHHHHHhCCc-eEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHc-CCceEEEeeecc
Confidence 8532 12 67788999975 5666677532 1 2 2 222344555554443 3344555432
Q ss_pred CCCCCCCcHHHHHHHHHHH
Q 015201 372 HGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~ 390 (411)
.+...+-+.|-++++.+++
T Consensus 180 DGtk~GyDl~l~~~v~~~v 198 (256)
T COG0107 180 DGTKAGYDLELTRAVREAV 198 (256)
T ss_pred cccccCcCHHHHHHHHHhC
Confidence 2455556666666665554
No 415
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=54.05 E-value=2.2e+02 Score=27.66 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d 311 (411)
.+...+++..+.++..|.-..+.. .+ .+. +.+.++.+...+... ..+|+.+|.+-..+ .+..-++.|++
T Consensus 30 ~~~avi~AAee~~sPvIlq~~~~~~~~~~g~----~~~~~~~~~~a~~~~---~~VPV~lHLDHg~~~e~i~~ai~~Gft 102 (288)
T TIGR00167 30 TINAVLEAAAEEKSPVIIQFSNGAAKYIAGL----GAISAMVKAMSEAYP---YGVPVALHLDHGASEEDCAQAVKAGFS 102 (288)
T ss_pred HHHHHHHHHHHHCCCEEEECCcchhhccCCH----HHHHHHHHHHHHhcc---CCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 334555667777888875332222 23 343 234445554444331 14799999974433 56666788999
Q ss_pred EEEcCC
Q 015201 312 VIGLDW 317 (411)
Q Consensus 312 ~l~~d~ 317 (411)
.+.+|.
T Consensus 103 SVMiDg 108 (288)
T TIGR00167 103 SVMIDG 108 (288)
T ss_pred EEEecC
Confidence 998874
No 416
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.78 E-value=18 Score=35.01 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
+-++..+++|+|.|++ | -|||++-++.+ +.+++. ..+-..|+++ .+..+..+|+|.++..
T Consensus 204 ee~~ea~~~gaDiImL-D----n~s~e~l~~av--------~~~~~~-----~~leaSGgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 204 DQIEPVLAAGVDTIML-D----NFSLDDLREGV--------ELVDGR-----AIVEASGNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHHhcCCCEEEE-C----CCCHHHHHHHH--------HHhCCC-----eEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3445556789999843 3 47888766543 334422 3567788887 5899999999999875
Q ss_pred C
Q 015201 317 W 317 (411)
Q Consensus 317 ~ 317 (411)
.
T Consensus 266 a 266 (281)
T PRK06543 266 A 266 (281)
T ss_pred c
Confidence 3
No 417
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=53.56 E-value=1.3e+02 Score=29.73 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHHHHH---------HHHHHHHHHHHHHHHhh-CCCCCEE
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG----QLPPHMWE---------QWSEPYIREIVSLVRTK-CPETPIV 292 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~----~iSp~~f~---------ef~~Py~k~i~~~i~~~-~~g~~~~ 292 (411)
.+-++.+.+-..+.++...++|.|+|.+.-.-+- |+||..=+ |-=.-+..++++.+++. +.+.++.
T Consensus 133 ~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~ 212 (343)
T cd04734 133 EEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVG 212 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEE
Q ss_pred EEecCCc------------ccHhHHhcCC-CcEEEcCCCCCHHH-----------------------HHHHhCCCeeEEc
Q 015201 293 LYINGNG------------GFLERMKGTG-VDVIGLDWTVDMAD-----------------------GRKRLGNDISVQG 336 (411)
Q Consensus 293 ~H~CG~~------------~~l~~~~e~g-~d~l~~d~~~di~~-----------------------~~~~~g~~~~l~G 336 (411)
+=..... .+++.+.+.| +|.+++........ +|+.++-.+...|
T Consensus 213 iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G 292 (343)
T cd04734 213 IRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAG 292 (343)
T ss_pred EEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeC
Q ss_pred cC
Q 015201 337 NV 338 (411)
Q Consensus 337 ~v 338 (411)
++
T Consensus 293 ~i 294 (343)
T cd04734 293 RI 294 (343)
T ss_pred CC
No 418
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.22 E-value=2e+02 Score=27.10 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHh
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSW-GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG------FLERMK 306 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~-~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~ 306 (411)
.+.+.+.++...+.|++.|.+.... ..-.+.+...+.....++++.+.++++ |+.+.+|.+++.. .+..+.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~--GV~i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRA--SVTLAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHh--CCEEEEeecCCcccCCHHHHHHHHH
Confidence 3455566667778899988764211 001233555667778999999999988 7889999886532 123444
Q ss_pred cCCCcEE--EcC------CCCCHHHHHHHhCCCeeEE--ccCCcC---cc-CCCHHHHHHHHHHHHHHhCC-CCeEEeCC
Q 015201 307 GTGVDVI--GLD------WTVDMADGRKRLGNDISVQ--GNVDPA---CL-FSPLPALTDEIQRVVKCAGS-RGHILNLG 371 (411)
Q Consensus 307 e~g~d~l--~~d------~~~di~~~~~~~g~~~~l~--G~vd~~---~L-~gt~eeV~~ev~~~i~~~~~-~gfIls~g 371 (411)
+.+-+.+ .+| ...|.....+.+++++.-+ .+.++. .+ .|+-+-=.+.+.+.|+..+- |.+.+-.-
T Consensus 176 ~v~~~~lgl~~D~~h~~~~~~~~~~~i~~~~~~i~~vHikD~~~~~~~~~~~G~G~id~~~i~~~L~~~gy~g~~~~E~~ 255 (283)
T PRK13209 176 YLNSPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGEGVVDFERCFKTLKQSGYCGPYLIEMW 255 (283)
T ss_pred HhCCCccceEeccchHHHhcCCHHHHHHhCcCcEEEEEeccCCCCCCceeCCCCCccCHHHHHHHHHHcCCCceEEEEec
Confidence 4443322 333 2346666666777765432 222221 12 24333223445566666653 55555533
Q ss_pred CCCCCCCcHHHHHHHHHHHHhc
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~y 393 (411)
..- ...|.+.++.-++.+++.
T Consensus 256 ~~~-~~~~~~~~~~~~~~l~~~ 276 (283)
T PRK13209 256 SET-AEDPAAEVAKARDFVKAR 276 (283)
T ss_pred CCc-cccHHHHHHHHHHHHHHH
Confidence 222 224677777777766664
No 419
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=53.05 E-value=12 Score=36.29 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=75.9
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC----CHHHHHHHHHHHHHHHHHHHHhhCCCCCE
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL----PPHMWEQWSEPYIREIVSLVRTKCPETPI 291 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i----Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~ 291 (411)
..+|.+||.+.++++ +.|+|.+.++=... |+. .|+ +=+..+++|-+.+. ++|+
T Consensus 151 ~~~~TdP~~a~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~~p~----Ld~~~L~~I~~~~~----~iPL 208 (287)
T PF01116_consen 151 ESLYTDPEEAKEFVE--------------ETGVDALAVAIGTAHGMYKGGKKPK----LDFDRLKEIREAVP----DIPL 208 (287)
T ss_dssp TTCSSSHHHHHHHHH--------------HHTTSEEEE-SSSBSSSBSSSSSTC------HHHHHHHHHHHH----TSEE
T ss_pred cccccCHHHHHHHHH--------------HhCCCEEEEecCccccccCCCCCcc----cCHHHHHHHHHhcC----CCCE
Confidence 578899987766554 56899876653322 221 343 33344556666664 5799
Q ss_pred EEEecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 292 VLYINGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 292 ~~H~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
++|-.-... .+...++.|+.-+|++..+- ...+++.+..+. ++.||..+ ..-.+.+.+.+++.|+.++.
T Consensus 209 VlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 283 (287)
T PF01116_consen 209 VLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLAENP---DKYDPRKLMKAAKEAMKEVVKEKIRLFGS 283 (287)
T ss_dssp EESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHHHST---TEHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHHhCc---ccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999875554 57888899999999865221 122344443211 22566544 46778899999999998875
No 420
>PRK05451 dihydroorotase; Provisional
Probab=53.00 E-value=1.3e+02 Score=29.71 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCcc---------------cHhHHh-cC-CCcEE--EcCCCCCHHHHHHHhCCCeeEE
Q 015201 275 IREIVSLVRTKCPETPIVLYINGNGG---------------FLERMK-GT-GVDVI--GLDWTVDMADGRKRLGNDISVQ 335 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H~CG~~~---------------~l~~~~-e~-g~d~l--~~d~~~di~~~~~~~g~~~~l~ 335 (411)
+.++++.+.+. |.++++|. ++.. .+..+. +. |..+. ++.....+..+++. +. -+.
T Consensus 120 l~~~~e~~~~~--g~~V~vHa-E~~~~~~~~~~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~a-~~--~it 193 (345)
T PRK05451 120 IYPVLEAMQKL--GMPLLVHG-EVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREA-ND--NLA 193 (345)
T ss_pred HHHHHHHHHHc--CCEEEEec-CCCCcccccccchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHhc-CC--CEE
Confidence 34455666665 67777774 4311 123233 33 44432 44443345555443 32 455
Q ss_pred ccCCcCccCCCHHH
Q 015201 336 GNVDPACLFSPLPA 349 (411)
Q Consensus 336 G~vd~~~L~gt~ee 349 (411)
+.+.|..|.-|.|+
T Consensus 194 ~Et~ph~L~l~~~~ 207 (345)
T PRK05451 194 ATITPHHLLINRND 207 (345)
T ss_pred EEecHHHHhcCHHH
Confidence 66666655444444
No 421
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=52.99 E-value=2.3e+02 Score=27.77 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE---------ec---CCc-c-cHhHH
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY---------IN---GNG-G-FLERM 305 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H---------~C---G~~-~-~l~~~ 305 (411)
.++.+.+.|++.+++.+......+ ..++.++++.+++.++++. +| .| |-. . .+..+
T Consensus 80 ~~~~~~~~G~~~i~l~gG~~p~~~--------~~~~~~li~~Ik~~~~~i~--~~~~s~~ei~~~~~~~g~~~~e~l~~L 149 (340)
T TIGR03699 80 KIEELVAYGGTQILLQGGVNPDLG--------LDYYEDLFRAIKARFPHIH--IHSFSPVEIVYIAKKEGLSLREVLERL 149 (340)
T ss_pred HHHHHHHcCCcEEEEecCCCCCCC--------HHHHHHHHHHHHHHCCCcC--CCCCCHHHHHHHhccCCCCHHHHHHHH
Confidence 344445679998888532222233 3455677788887643332 22 33 333 2 46788
Q ss_pred hcCCCcEEE
Q 015201 306 KGTGVDVIG 314 (411)
Q Consensus 306 ~e~g~d~l~ 314 (411)
++.|++.++
T Consensus 150 k~aG~~~~~ 158 (340)
T TIGR03699 150 KEAGLDSIP 158 (340)
T ss_pred HHcCCCcCC
Confidence 888988764
No 422
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=52.92 E-value=1.5e+02 Score=25.54 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=36.0
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccH-hH-HhcCCCcEEEcCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFL-ER-MKGTGVDVIGLDW 317 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l-~~-~~e~g~d~l~~d~ 317 (411)
++...++|+|+|.+....... | ++. .++++.+++..++.+ +.+.+...... .. +.+.|++.+.++.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~--~----~~~----~~~~~~i~~~~~~~~-v~~~~~~~~~~~~~~~~~~g~d~i~~~~ 144 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL--A----RED----LELIRELREAVPDVK-VVVKLSPTGELAAAAAEEAGVDEVGLGN 144 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH--H----HHH----HHHHHHHHHhcCCce-EEEEECCCCccchhhHHHcCCCEEEEcC
Confidence 566778999999876543322 1 222 344455554422444 34455433322 22 5677888886643
No 423
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=52.87 E-value=5 Score=40.53 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCCCE----EEEecCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQ---LPPHMWEQWSEPYIREIVSLVRTKCPETPI----VLYINGN 298 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~---iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~----~~H~CG~ 298 (411)
.+...++++..+|+|+| +.|-|=|+ -+| .+|-+-+++++++.+++. |.++ -+|.||.
T Consensus 17 ~~~~~L~~LK~~GV~GV-mvdvWWGiVE~~~p---~~ydWs~Y~~l~~~vr~~--GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGV-MVDVWWGIVEGEGP---QQYDWSGYRELFEMVRDA--GLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHHHHTTEEEE-EEEEEHHHHTGSST---TB---HHHHHHHHHHHHT--T-EEEEEEE-S-BSS
T ss_pred HHHHHHHHHHHcCCcEE-EEEeEeeeeccCCC---CccCcHHHHHHHHHHHHc--CCeEEEEEeeecCCC
Confidence 44556778889999998 44544332 234 578899999999999998 5543 4699963
No 424
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.86 E-value=2e+02 Score=26.99 Aligned_cols=138 Identities=16% Similarity=0.096 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~ 314 (411)
+.++.+.+.|++.+.+.|-.+. .-.+ --+..++++.+.+ ++|++ .+|.+. .++.+.+.|++.+.
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~~~-----~n~~~i~~i~~~~-----~~pv~--~~GGi~s~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEGRT-----TMIDVVERTAETV-----FIPLT--VGGGIKSIEDVDKLLRAGADKVS 101 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccCh-----hhHHHHHHHHHhc-----CCCEE--EECCCCCHHHHHHHHHcCCCEEE
Confidence 4566777899999999996554 2222 1234444444443 45643 455554 35667778999886
Q ss_pred cCCC----C-CHHHHHHHhC-CCeeEEccCC--c-------Cc-----cCCCHHHHHHHHHHHHHHhCCCCeEEeCC--C
Q 015201 315 LDWT----V-DMADGRKRLG-NDISVQGNVD--P-------AC-----LFSPLPALTDEIQRVVKCAGSRGHILNLG--H 372 (411)
Q Consensus 315 ~d~~----~-di~~~~~~~g-~~~~l~G~vd--~-------~~-----L~gt~eeV~~ev~~~i~~~~~~gfIls~g--c 372 (411)
+... . -+.++.+.|| +++++.=.+- + .. ...+.++..+.++++.+. +-..++++.- .
T Consensus 102 vgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~-G~~~iivt~i~~~ 180 (254)
T TIGR00735 102 INTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL-GAGEILLTSMDKD 180 (254)
T ss_pred EChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc-CCCEEEEeCcCcc
Confidence 5431 1 2556777787 5666532211 0 01 112345555555555443 3235666322 2
Q ss_pred CCCCCCcHHHHHHHHHH
Q 015201 373 GVLVGTPEEAVAHFFEV 389 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a 389 (411)
+...+...+-++.+.+.
T Consensus 181 g~~~g~~~~~~~~i~~~ 197 (254)
T TIGR00735 181 GTKSGYDLELTKAVSEA 197 (254)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 22345556655555543
No 425
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=52.80 E-value=2.2e+02 Score=27.46 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWE 268 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ 268 (411)
++.-+++++.+.++|++.|-++ + ..+|++.++
T Consensus 22 ~~~Ki~ia~~L~~~Gv~~IE~g--f-P~~~~~e~e 53 (284)
T cd07942 22 VEQKLRFFKLLVKIGFKEIEVG--F-PSASQTDFD 53 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe--C-CCCCHHHHH
Confidence 3455678888999999998765 2 447776643
No 426
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=52.58 E-value=1.4e+02 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGL 315 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~ 315 (411)
.|++.++++.+++. |+.+.+.+.|... .++.+ +.+.+.+.+
T Consensus 144 ~p~l~eli~~~k~~--Gi~~~L~TNG~~~e~l~~L-~~~~d~i~V 185 (322)
T PRK13762 144 YPYLPELIEEFHKR--GFTTFLVTNGTRPDVLEKL-EEEPTQLYV 185 (322)
T ss_pred hhhHHHHHHHHHHc--CCCEEEECCCCCHHHHHHH-HhcCCEEEE
Confidence 35677888999987 6788899999654 45666 457777644
No 427
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=52.46 E-value=1.4e+02 Score=28.25 Aligned_cols=66 Identities=14% Similarity=-0.025 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 232 HLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 232 ~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
...+.+.+.++...+.|++.+.+.-.....-+.+...+.+...++++++.+++. |+.+.++.++..
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gi~l~lEn~~~~ 147 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETK--GVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCC--CCEEEEeCCCCC
Confidence 334555566677778899987664332222456777788899999999999877 688888887654
No 428
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=52.21 E-value=2.6e+02 Score=28.08 Aligned_cols=72 Identities=11% Similarity=-0.021 Sum_probs=39.3
Q ss_pred HHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCCcc-c---HhHHhcCCCcEE
Q 015201 241 IIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPE-TPIVLYINGNGG-F---LERMKGTGVDVI 313 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g-~~~~~H~CG~~~-~---l~~~~e~g~d~l 313 (411)
+..+...|+|.|---+..++ +++-+.=.+.+..- ++.+.+.+|+ ++++..+.|... . .+...+.|.+++
T Consensus 147 ~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~a----v~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~v 222 (364)
T cd08210 147 AYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEA----VAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGV 222 (364)
T ss_pred HHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHH----HHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 34566789998754344554 55554433333333 3333322223 445566666643 2 366778898887
Q ss_pred EcC
Q 015201 314 GLD 316 (411)
Q Consensus 314 ~~d 316 (411)
.++
T Consensus 223 Mv~ 225 (364)
T cd08210 223 LIA 225 (364)
T ss_pred Eee
Confidence 543
No 429
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=52.19 E-value=14 Score=36.15 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=26.6
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 343 LFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 343 L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
+.||||+|.+.+++..+..+-..+++..+.+.|
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~~ 304 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFESMGS 304 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeccCCCC
Confidence 469999999999988888765788888775544
No 430
>PLN02321 2-isopropylmalate synthase
Probab=52.16 E-value=53 Score=35.56 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCCccc-H-hH--Hhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP---ETPIVLYINGNGGF-L-ER--MKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~---g~~~~~H~CG~~~~-l-~~--~~e 307 (411)
+++.+++++..++|++.|.+.|..|. ..|..+.+++ +.+++..+ ++++-+|.+.+... + .. -.+
T Consensus 240 d~l~~~~~~a~~aGa~~I~L~DTvG~-~~P~~v~~li--------~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~ 310 (632)
T PLN02321 240 EFLYRILGEVIKAGATTLNIPDTVGY-TLPSEFGQLI--------ADIKANTPGIENVIISTHCQNDLGLSTANTLAGAH 310 (632)
T ss_pred HHHHHHHHHHHHcCCCEEEecccccC-CCHHHHHHHH--------HHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 55666777888999999988887765 7787765543 33333322 34578888877542 2 22 336
Q ss_pred CCCcEEE
Q 015201 308 TGVDVIG 314 (411)
Q Consensus 308 ~g~d~l~ 314 (411)
.|++.+.
T Consensus 311 AGA~~Vd 317 (632)
T PLN02321 311 AGARQVE 317 (632)
T ss_pred hCCCEEE
Confidence 7888874
No 431
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=51.86 E-value=1.1e+02 Score=30.07 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCC
Q 015201 273 PYIREIVSLVRTKCPETPIVLYINGN 298 (411)
Q Consensus 273 Py~k~i~~~i~~~~~g~~~~~H~CG~ 298 (411)
+.+.++++.+.+. |.++++| |++
T Consensus 113 ~~l~~~~e~~~~~--g~~V~vH-aE~ 135 (335)
T cd01294 113 EKIYPVLEAMQKL--GMPLLVH-GEV 135 (335)
T ss_pred HHHHHHHHHHHHc--CCeEEEe-cCC
Confidence 5566667777766 6778888 444
No 432
>PRK08445 hypothetical protein; Provisional
Probab=51.85 E-value=2.1e+02 Score=28.50 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe------------cCCc-c-cHh
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI------------NGNG-G-FLE 303 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~------------CG~~-~-~l~ 303 (411)
.+.++...+.|+..|++.+.-...+.. .|+.++++.+++..|++ -+|. +|.. . .+.
T Consensus 79 ~~~~~~a~~~g~~~i~~~gg~~~~~~~--------e~~~~l~~~Ik~~~p~i--~~~a~s~~ei~~~a~~~~~~~~e~L~ 148 (348)
T PRK08445 79 DKKIEELLAIGGTQILFQGGVHPKLKI--------EWYENLVSHIAQKYPTI--TIHGFSAVEIDYIAKISKISIKEVLE 148 (348)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCH--------HHHHHHHHHHHHHCCCc--EEEEccHHHHHHHHHHhCCCHHHHHH
Confidence 344445667788887665433333343 46677899999886443 2332 2222 2 467
Q ss_pred HHhcCCCcEE
Q 015201 304 RMKGTGVDVI 313 (411)
Q Consensus 304 ~~~e~g~d~l 313 (411)
.+++.|++.+
T Consensus 149 ~LkeAGl~~~ 158 (348)
T PRK08445 149 RLQAKGLSSI 158 (348)
T ss_pred HHHHcCCCCC
Confidence 8889999876
No 433
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.67 E-value=1.3e+02 Score=31.47 Aligned_cols=147 Identities=14% Similarity=0.033 Sum_probs=77.5
Q ss_pred HHHHHHHHhCCCEEEEecCCC---CCCCHHHHHHH-HHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWG---GQLPPHMWEQW-SEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVI 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~---~~iSp~~f~ef-~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l 313 (411)
+.++.+.+.+.+.+.+.|+-+ |+++.+...+. ..|..+ ..+. .. -+.-......+.. .+..+.+.|++.+
T Consensus 169 eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g--~l--~V~aav~~~~~~~~~a~~Lv~aGvd~i 243 (479)
T PRK07807 169 EAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAG--RL--RVAAAVGINGDVAAKARALLEAGVDVL 243 (479)
T ss_pred HHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhh--cc--chHhhhccChhHHHHHHHHHHhCCCEE
Confidence 444556677888776766533 57777766553 333221 1111 00 0001122223333 4678888999999
Q ss_pred EcCCCC--------CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeE--EeC--CCCCCC--CCc
Q 015201 314 GLDWTV--------DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHI--LNL--GHGVLV--GTP 379 (411)
Q Consensus 314 ~~d~~~--------di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfI--ls~--gc~i~~--~tp 379 (411)
.+|... -++++|++|++-..+.|||.+ . +.++.+++.+.+ .+- ++| -|+... ++.
T Consensus 244 ~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t------~----~~a~~l~~aGad-~v~vgig~gsictt~~~~~~~ 312 (479)
T PRK07807 244 VVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVT------A----EGTRDLVEAGAD-IVKVGVGPGAMCTTRMMTGVG 312 (479)
T ss_pred EEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCC------H----HHHHHHHHcCCC-EEEECccCCcccccccccCCc
Confidence 886422 278889999876667778875 3 445666665433 111 223 244321 111
Q ss_pred HHHHHHHHH---HHHhcCCCCCCCC
Q 015201 380 EEAVAHFFE---VGKSMKYDNSSQN 401 (411)
Q Consensus 380 ~Eni~a~~~---a~~~yg~~~~~~~ 401 (411)
.-.+.++.+ ++++++.+-|...
T Consensus 313 ~p~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 313 RPQFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred hhHHHHHHHHHHHHHhcCCcEEecC
Confidence 224555554 4447776555443
No 434
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.30 E-value=2e+02 Score=26.55 Aligned_cols=144 Identities=15% Similarity=0.235 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCCEEEEe--c-CCC-C-CCCHHHHHHHHHHH--------------HHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 239 DYIIYQVESGAHCIQIF--D-SWG-G-QLPPHMWEQWSEPY--------------IREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~--D-~~~-~-~iSp~~f~ef~~Py--------------~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
+.++.+.++|+|.+.+- | .+. + -++|+..+.+- ++ -.+.++.+.+.|++ .+.+|.--..
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~-~~~~~~~~dvHLMv~~p~~~i~~~~~~gad-~i~~H~Ea~~ 93 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALR-DYGITAPIDVHLMVKPVDRIIPDFAKAGAS-MITFHVEASE 93 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHH-HhCCCCCEEEEeccCCHHHHHHHHHHhCCC-EEEEcccCcc
Confidence 44566777899987653 2 122 1 36776655442 21 12455555555444 2566765332
Q ss_pred --c-cHhHHhcCCCcE-EEcCCCCCHHHHHHHhC--CCeeEEccCCcCc----c-CCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 300 --G-FLERMKGTGVDV-IGLDWTVDMADGRKRLG--NDISVQGNVDPAC----L-FSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 300 --~-~l~~~~e~g~d~-l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~----L-~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
. .+..+++.|+.+ +.+...+++..+...+. |.+.+| .++|.. + ..+.+.+ +++++.++..+ -.+.+
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvM-tV~PGfgGq~fi~~~lekI-~~l~~~~~~~~-~~~~I 170 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLM-SVNPGFGGQSFIPHTLDKL-RAVRKMIDESG-RDIRL 170 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEE-EecCCCCCceecHhHHHHH-HHHHHHHHhcC-CCeeE
Confidence 2 357777777655 45555566666655443 456666 466642 1 1333433 23344443321 12333
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHH
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
.. -.|+.+||+..+.++.-
T Consensus 171 ~v----dGGI~~eni~~l~~aGA 189 (220)
T PRK08883 171 EI----DGGVKVDNIREIAEAGA 189 (220)
T ss_pred EE----ECCCCHHHHHHHHHcCC
Confidence 22 34566889888877533
No 435
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=51.28 E-value=1.3e+02 Score=28.01 Aligned_cols=123 Identities=13% Similarity=0.046 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHH-------------
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ------------- 235 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d------------- 235 (411)
.....++++.+.+. .+. +=-.+++|-.....--.| ..|.++||.+.++++.+.+
T Consensus 84 ~~~~~~aa~~~~~~-~~~--ielN~gCP~~~v~~~g~G----------~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~ 150 (233)
T cd02911 84 LEPLLNAAALVAKN-AAI--LEINAHCRQPEMVEAGAG----------EALLKDPERLSEFIKALKETGVPVSVKIRAGV 150 (233)
T ss_pred HHHHHHHHHHHhhc-CCE--EEEECCCCcHHHhcCCcc----------hHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 34555666666542 321 233466676544331111 2567899999999887765
Q ss_pred --HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCC
Q 015201 236 --AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGV 310 (411)
Q Consensus 236 --~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~ 310 (411)
-..+.++.+.++|+|.+.+.....+ .+-.| +.+..++ . ++|++ ..|++. ....+.+.|+
T Consensus 151 ~~~~~~la~~l~~aG~d~ihv~~~~~g--~~ad~---------~~I~~i~-~--~ipVI--gnGgI~s~eda~~~l~~Ga 214 (233)
T cd02911 151 DVDDEELARLIEKAGADIIHVDAMDPG--NHADL---------KKIRDIS-T--ELFII--GNNSVTTIESAKEMFSYGA 214 (233)
T ss_pred CcCHHHHHHHHHHhCCCEEEECcCCCC--CCCcH---------HHHHHhc-C--CCEEE--EECCcCCHHHHHHHHHcCC
Confidence 2456667777889998755322222 01111 1222222 1 45544 566654 2444555788
Q ss_pred cEEEcCCCCC
Q 015201 311 DVIGLDWTVD 320 (411)
Q Consensus 311 d~l~~d~~~d 320 (411)
|.+.+....+
T Consensus 215 D~VmiGR~~~ 224 (233)
T cd02911 215 DMVSVARASL 224 (233)
T ss_pred CEEEEcCCCC
Confidence 8887754433
No 436
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=51.27 E-value=1.4e+02 Score=24.60 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWT 318 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~ 318 (411)
+++..+.++|.|.++-. . .-..+..+++++.+++.++. .+.+..+|... ..+.+.++|+|.+ ++..
T Consensus 43 ~~~a~~~~~d~V~iS~~------~----~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~~~~~~~~~~G~d~~-~~~~ 110 (122)
T cd02071 43 VEAAIQEDVDVIGLSSL------S----GGHMTLFPEVIELLRELGAG-DILVVGGGIIPPEDYELLKEMGVAEI-FGPG 110 (122)
T ss_pred HHHHHHcCCCEEEEccc------c----hhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHCCCCEE-ECCC
Confidence 34555778888876321 1 23344567888888887433 34567777654 3688999999875 2334
Q ss_pred CCHHHHHHH
Q 015201 319 VDMADGRKR 327 (411)
Q Consensus 319 ~di~~~~~~ 327 (411)
.++.++...
T Consensus 111 ~~~~~~~~~ 119 (122)
T cd02071 111 TSIEEIIDK 119 (122)
T ss_pred CCHHHHHHH
Confidence 455555443
No 437
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.25 E-value=79 Score=31.83 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHhCCCEEEEecCCCC--CCCHH-HHHHHHHHHHHHHHHHHHhhC
Q 015201 222 APHVLRTLLSHLTQ------------AIADYIIYQVESGAHCIQIFDSWGG--QLPPH-MWEQWSEPYIREIVSLVRTKC 286 (411)
Q Consensus 222 ~Pe~v~~ll~~~~d------------~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~-~f~ef~~Py~k~i~~~i~~~~ 286 (411)
+|+++.++++.+-+ ...+.++.++++|+|.|.++-.... ...+. .++. +.+.+++.
T Consensus 116 ~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~--------i~~~ik~~- 186 (368)
T PRK08649 116 KPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLN--------LKEFIYEL- 186 (368)
T ss_pred CHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHH--------HHHHHHHC-
Confidence 56666666665554 3567788889999999987532111 11111 2222 23334433
Q ss_pred CCCCEEEEecCCcc---cHhHHhcCCCcEEEc
Q 015201 287 PETPIVLYINGNGG---FLERMKGTGVDVIGL 315 (411)
Q Consensus 287 ~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~ 315 (411)
++|++ + |+.. ....+.+.|+|++-+
T Consensus 187 -~ipVI-a--G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 187 -DVPVI-V--GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred -CCCEE-E--eCCCCHHHHHHHHHcCCCEEEE
Confidence 57764 3 5543 345666799999844
No 438
>PLN02229 alpha-galactosidase
Probab=51.17 E-value=1.8e+02 Score=29.99 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=57.5
Q ss_pred HHHHhCCCEEEEecCCC-------C--CCCHHHHHHHHHHH-HHHHHHHHHhhCCCCCEEEEe------cCCc----c--
Q 015201 243 YQVESGAHCIQIFDSWG-------G--QLPPHMWEQWSEPY-IREIVSLVRTKCPETPIVLYI------NGNG----G-- 300 (411)
Q Consensus 243 ~~~e~G~d~i~i~D~~~-------~--~iSp~~f~ef~~Py-~k~i~~~i~~~~~g~~~~~H~------CG~~----~-- 300 (411)
.+.++|.+.|.+-|.|. | +.+|+.| |- +|.+.+.+|++ |.+.-+|+ |+.. .
T Consensus 93 Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rF-----P~G~k~ladyiH~~--GlKfGIy~d~G~~TC~~~pGS~g~e 165 (427)
T PLN02229 93 GLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTF-----PSGIKLLADYVHSK--GLKLGIYSDAGVFTCQVRPGSLFHE 165 (427)
T ss_pred HHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhc-----CCcHHHHHHHHHHC--CCceEEeccCCCcccCCCCCCccHH
Confidence 56789999998877774 2 3455554 43 89999999998 67776665 5322 1
Q ss_pred --cHhHHhcCCCcEEEcCCCC----C-------HHHHHHHhCCCeeEE
Q 015201 301 --FLERMKGTGVDVIGLDWTV----D-------MADGRKRLGNDISVQ 335 (411)
Q Consensus 301 --~l~~~~e~g~d~l~~d~~~----d-------i~~~~~~~g~~~~l~ 335 (411)
..+.+.+.|+|-+=.|.+. + +.++-++.|..+.+.
T Consensus 166 ~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~S 213 (427)
T PLN02229 166 VDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYS 213 (427)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEE
Confidence 1356889999999777641 1 344555567666553
No 439
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=51.06 E-value=70 Score=33.39 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGV 310 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~ 310 (411)
.+-..+.++.++++|+|.|.+ |..-+ =| .+..++++.+|+.++++|++. |+.. -...+.+.|+
T Consensus 223 ~~~~~~ra~~Lv~aGVd~i~~-D~a~g-~~---------~~~~~~i~~i~~~~~~~~vi~---g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 223 NGDVGGKAKALLDAGVDVLVI-DTAHG-HQ---------VKMISAIKAVRALDLGVPIVA---GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred CccHHHHHHHHHHhCCCEEEE-eCCCC-Cc---------HHHHHHHHHHHHHCCCCeEEE---eccCCHHHHHHHHHhCC
Confidence 445567888999999999855 43333 11 345667788888777777766 5543 4688889999
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
|++.
T Consensus 289 d~i~ 292 (475)
T TIGR01303 289 NIIK 292 (475)
T ss_pred CEEE
Confidence 9996
No 440
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.99 E-value=51 Score=31.83 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=62.2
Q ss_pred HhCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCC--C
Q 015201 246 ESGAHCIQI--FDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWT--V 319 (411)
Q Consensus 246 e~G~d~i~i--~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~--~ 319 (411)
+.|+|.+.+ +-..++. |. -...-+..++++.+.+ ++|+++|-.-.+. .+..+.+.|++.+++... .
T Consensus 164 ~tg~DyLAvaiG~~hg~~--~~-~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 164 ETDVDALAVAIGNAHGMY--NG-DPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred hhCCCEEEEccCCCCCCC--CC-CCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH
Confidence 369999876 3333322 10 0112223334444333 6899988754443 688899999999987542 2
Q ss_pred CHHHH-HHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 320 DMADG-RKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 320 di~~~-~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
++.+. ++.+...- ..|+..+ ....+.+++.+++.|+.++.
T Consensus 236 a~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~gs 277 (281)
T PRK06806 236 SVITAVNNLVLNTP----YSDYFTYHQDVIKAAYENVKKHMQIFGS 277 (281)
T ss_pred HHHHHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34333 33332211 2566544 45668899999999998864
No 441
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=50.98 E-value=2.9e+02 Score=28.24 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=72.1
Q ss_pred HHHhCCCEEEEec-----CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE-EEEecCCcc---------------
Q 015201 244 QVESGAHCIQIFD-----SWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPI-VLYINGNGG--------------- 300 (411)
Q Consensus 244 ~~e~G~d~i~i~D-----~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~-~~H~CG~~~--------------- 300 (411)
..+.+...++.+. ..|| =|.|..|++|+.. +.+.+ |.|. -+-.||++-
T Consensus 33 a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~----iA~~~-----gf~~~~iiLggDHlGPn~Wq~lpa~eAM~ 103 (420)
T TIGR02810 33 ARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVET----IADRI-----GFPRDRLILGGDHLGPNPWQHLPADEAMA 103 (420)
T ss_pred HhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHH----HHHHc-----CCChhcEEeecCCCCCccccCCCHHHHHH
Confidence 3455555554442 2344 5999999998754 55554 4444 445666631
Q ss_pred ----cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHH---Hh-----C-C-CCe
Q 015201 301 ----FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVK---CA-----G-S-RGH 366 (411)
Q Consensus 301 ----~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~---~~-----~-~-~gf 366 (411)
.+....+.|++-|++|..|+. .+ ||.- -+.+.|.+.+.++++ .. + . -.|
T Consensus 104 ~A~~li~ayV~AGF~kIHLD~Sm~c------a~---------d~~~--L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vY 166 (420)
T TIGR02810 104 KAAALVDAYVEAGFTKIHLDASMGC------AG---------DPAP--LDDATVAERAARLCAVAEAAATDRRGETKPVY 166 (420)
T ss_pred HHHHHHHHHHHcCCceEEecCCCCc------cC---------CCcc--CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 123344678888888877661 11 2211 245556666665555 21 2 1 469
Q ss_pred EEeCCCCCCCC----------CcHHHHHHHHHHHHh
Q 015201 367 ILNLGHGVLVG----------TPEEAVAHFFEVGKS 392 (411)
Q Consensus 367 Ils~gc~i~~~----------tp~Eni~a~~~a~~~ 392 (411)
+++|---+|.| |++|..++.+++-++
T Consensus 167 vIGTEvP~pGGa~~~~~~~~vTs~e~~~~ti~~h~~ 202 (420)
T TIGR02810 167 VIGTEVPVPGGALEALQTLAVTTPEAARATLRAHRK 202 (420)
T ss_pred EeccccCCCCchhhhccccCCCCHHHHHHHHHHHHH
Confidence 99776555555 688888888887744
No 442
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=50.93 E-value=43 Score=32.51 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.6
Q ss_pred HHhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCC
Q 015201 218 MCHTAPHVLRTLLSHLTQA---------------IADYIIYQVESGAHCIQIFDSWGG 260 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~---------------~~~~~~~~~e~G~d~i~i~D~~~~ 260 (411)
.+..+||.+.++++.+.+. ..+.++.+.++|+|+|.+.....+
T Consensus 148 ~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 148 AVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred hhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 5667899999999887653 336777888999999987765443
No 443
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=50.86 E-value=2.7e+02 Score=27.92 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=34.8
Q ss_pred HHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC-EEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 242 IYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETP-IVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 242 ~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~-~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
+.+.+.|+..|.+.. | .++.|+ +.++++.+++. +|+. +.+-+-|..- .++.+.+.|++.+++
T Consensus 100 ~~~~~~Gv~~I~~tG--GEPllr~d---------l~eli~~l~~~-~gi~~i~itTNG~lL~~~~~~L~~aGld~VnI 165 (373)
T PLN02951 100 GLFVAAGVDKIRLTG--GEPTLRKD---------IEDICLQLSSL-KGLKTLAMTTNGITLSRKLPRLKEAGLTSLNI 165 (373)
T ss_pred HHHHHCCCCEEEEEC--CCCcchhh---------HHHHHHHHHhc-CCCceEEEeeCcchHHHHHHHHHhCCCCeEEE
Confidence 344567888876642 2 155543 44556666654 2443 3333335432 367788899998754
No 444
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.74 E-value=2e+02 Score=26.31 Aligned_cols=138 Identities=21% Similarity=0.196 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~ 314 (411)
+++++.+.+.|+|.+.+.|-.+.+-.. ..-.++.+++.+.+ ++| +...|.+. ..+.+.+.|+|.+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~----~~~~~~i~~i~~~~-----~~p--v~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGE----PVNLELIEEIVKAV-----GIP--VQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCC----CCCHHHHHHHHHhc-----CCC--EEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 356667778999999999855432111 11234444444443 356 44677665 35667789999886
Q ss_pred cCCCC-----CHHHHHHHhCC-CeeEEccCCcC---cc-C----CCHHHHHHHHHHHHHHhCCCCeEEeCC--CCCCCCC
Q 015201 315 LDWTV-----DMADGRKRLGN-DISVQGNVDPA---CL-F----SPLPALTDEIQRVVKCAGSRGHILNLG--HGVLVGT 378 (411)
Q Consensus 315 ~d~~~-----di~~~~~~~g~-~~~l~G~vd~~---~L-~----gt~eeV~~ev~~~i~~~~~~gfIls~g--c~i~~~t 378 (411)
+.... -+.++.+.+|. ++.+. +|.. .. . .+..+..+-+++ ++..+-..+++..= -+...+.
T Consensus 101 igs~~l~dp~~~~~i~~~~g~~~i~~s--id~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ga~~iii~~~~~~g~~~g~ 177 (234)
T cd04732 101 IGTAAVKNPELVKELLKEYGGERIVVG--LDAKDGKVATKGWLETSEVSLEELAKR-FEELGVKAIIYTDISRDGTLSGP 177 (234)
T ss_pred ECchHHhChHHHHHHHHHcCCceEEEE--EEeeCCEEEECCCeeecCCCHHHHHHH-HHHcCCCEEEEEeecCCCccCCC
Confidence 54321 26677778876 44333 3311 11 1 123333333333 34444456666421 1122445
Q ss_pred cHHHHHHHHHH
Q 015201 379 PEEAVAHFFEV 389 (411)
Q Consensus 379 p~Eni~a~~~a 389 (411)
+.+-++.+.+.
T Consensus 178 ~~~~i~~i~~~ 188 (234)
T cd04732 178 NFELYKELAAA 188 (234)
T ss_pred CHHHHHHHHHh
Confidence 56666666554
No 445
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=50.70 E-value=2.2e+02 Score=29.06 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCEEEEec-CCCC----CCCHHHHHHHHHHHHHHHHHHHHhh
Q 015201 239 DYIIYQVESGAHCIQIFD-SWGG----QLPPHMWEQWSEPYIREIVSLVRTK 285 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D-~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~ 285 (411)
+.++.+.+.|...|.+.+ +... +.++ +++.++++.+++.
T Consensus 171 ~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~--------~~l~~Ll~~i~~~ 214 (430)
T TIGR01125 171 KEAERLVDQGVKEIILIAQDTTAYGKDLYRE--------SKLVDLLEELGKV 214 (430)
T ss_pred HHHHHHHHCCCcEEEEEeECCCccccCCCCc--------ccHHHHHHHHHhc
Confidence 344455666887776654 4332 2222 4566777777665
No 446
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=50.66 E-value=3.7e+02 Score=31.52 Aligned_cols=129 Identities=20% Similarity=0.324 Sum_probs=73.6
Q ss_pred EEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------c-----cHhHHhcCCC
Q 015201 252 IQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------G-----FLERMKGTGV 310 (411)
Q Consensus 252 i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------~-----~l~~~~e~g~ 310 (411)
++-.+.||| ++..+=|++ ++.+++.-|++++-+..-|.. . +++...+.|+
T Consensus 569 ~~s~E~wggAtfd~~~rfl~EdPwer---------l~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~Gi 639 (1143)
T TIGR01235 569 LFSLECWGGATFDVAMRFLHEDPWER---------LEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGI 639 (1143)
T ss_pred ceEEEeeCCccHHHHHHHhcCCHHHH---------HHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCC
Confidence 445577886 454444555 455555556778777777752 1 1234456799
Q ss_pred cEE-EcCCCCCHHHH------HHHhCC----CeeEEccC-CcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC
Q 015201 311 DVI-GLDWTVDMADG------RKRLGN----DISVQGNV-DPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT 378 (411)
Q Consensus 311 d~l-~~d~~~di~~~------~~~~g~----~~~l~G~v-d~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t 378 (411)
|++ .+|.-+|+..+ .++.|. .+|..|++ ||..-.-|.+-+.+.++++.+.+ -.+++... ...-.
T Consensus 640 difrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G---ad~I~ikD-t~Gll 715 (1143)
T TIGR01235 640 DIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG---AHILGIKD-MAGLL 715 (1143)
T ss_pred CEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC---CCEEEECC-CcCCc
Confidence 999 45765554332 233453 24444443 33322356777777777776643 33454433 33334
Q ss_pred cHHHHHHHHHHHHhc
Q 015201 379 PEEAVAHFFEVGKSM 393 (411)
Q Consensus 379 p~Eni~a~~~a~~~y 393 (411)
.|+.+..++.+.++-
T Consensus 716 ~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 716 KPAAAKLLIKALREK 730 (1143)
T ss_pred CHHHHHHHHHHHHHh
Confidence 567788888888763
No 447
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.28 E-value=1.3e+02 Score=29.10 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=20.4
Q ss_pred CCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHH
Q 015201 338 VDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389 (411)
Q Consensus 338 vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a 389 (411)
.|-.+| +.++|++++.++ .++...+.-.|..+| |++++|+.++.++
T Consensus 220 aDiI~LDnm~~e~vk~av~-~~~~~~~~v~ieaSG-----GI~~~ni~~yA~t 266 (289)
T PRK07896 220 AELVLLDNFPVWQTQEAVQ-RRDARAPTVLLESSG-----GLTLDTAAAYAET 266 (289)
T ss_pred CCEEEeCCCCHHHHHHHHH-HHhccCCCEEEEEEC-----CCCHHHHHHHHhc
Confidence 333334 355666665555 222222222222222 3446666665554
No 448
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=50.03 E-value=1.8e+02 Score=25.45 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
..+.++.+.+.|++.+.+-+... ++..+.++ .+++.+..+.. ++++++|. .++...+.|+|++++.
T Consensus 14 ~~~~l~~l~~~g~~~i~lr~~~~---~~~~~~~~----~~~i~~~~~~~--~~~l~~~~-----~~~~a~~~g~~~vh~~ 79 (196)
T cd00564 14 LLEVVEAALKGGVTLVQLREKDL---SARELLEL----ARALRELCRKY--GVPLIIND-----RVDLALAVGADGVHLG 79 (196)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC---CHHHHHHH----HHHHHHHHHHh--CCeEEEeC-----hHHHHHHcCCCEEecC
Confidence 44667778889999987755322 33333333 34444444433 56677653 4677788899998875
Q ss_pred C-CCCHHHHHHH
Q 015201 317 W-TVDMADGRKR 327 (411)
Q Consensus 317 ~-~~di~~~~~~ 327 (411)
. ..+...+++.
T Consensus 80 ~~~~~~~~~~~~ 91 (196)
T cd00564 80 QDDLPVAEARAL 91 (196)
T ss_pred cccCCHHHHHHH
Confidence 4 2333444433
No 449
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=49.99 E-value=71 Score=29.83 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-- 300 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-- 300 (411)
+=-.|.++|.+.| -.+.++.+++.|+..|..+ |+--|. .-..|.++++++..+. . +.+-.+|.+.
T Consensus 117 ~vTFHrAFD~~~d-~~~ale~li~~Gv~RILTs---Gg~~sa----~eg~~~l~~li~~a~g----r-i~Im~GaGV~~~ 183 (241)
T COG3142 117 GVTFHRAFDECPD-PLEALEQLIELGVERILTS---GGKASA----LEGLDLLKRLIEQAKG----R-IIIMAGAGVRAE 183 (241)
T ss_pred ceeeehhhhhcCC-HHHHHHHHHHCCCcEEecC---CCcCch----hhhHHHHHHHHHHhcC----C-EEEEeCCCCCHH
Confidence 3456888998888 5677888899999988543 333333 3456788888888873 3 4556777665
Q ss_pred cHhHH-hcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC--ccCCCHHHHHHHHHHHHH
Q 015201 301 FLERM-KGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA--CLFSPLPALTDEIQRVVK 359 (411)
Q Consensus 301 ~l~~~-~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~--~L~gt~eeV~~ev~~~i~ 359 (411)
.+..+ ..+|+.-+|..... ...+-+.-..||..+-. ...-|..+..++++.+++
T Consensus 184 N~~~l~~~tg~~e~H~s~~~-----~~~~~~~~~~m~~~~~~~~~~~~td~~~v~~~~~~l~ 240 (241)
T COG3142 184 NIAELVLLTGVTEVHGSAGV-----EMRYRNPGSSMGADDFADEYIYDTDGAAVAEMKAILE 240 (241)
T ss_pred HHHHHHHhcCchhhhhcccc-----cccccCccCccccccccccccccCcHHHHHHHHHHhc
Confidence 68776 66899988765443 12222222334443332 225555555566666553
No 450
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=49.41 E-value=2.3e+02 Score=29.22 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=53.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC-C
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW-T 318 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~-~ 318 (411)
+++..+++|++.|++=+-. ++.+.+++. .+++.+..+++ +++++++. .++.-.+.|++++|+.. .
T Consensus 222 ~ve~aL~aGv~~VQLReK~---ls~~el~~l----a~~l~~l~~~~--gv~LiIND-----~~dlAl~~gAdGVHLGQeD 287 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKD---PQQADLEQQ----IIRAIALGREY--NAQVFIND-----YWQLAIKHQAYGVHLGQED 287 (437)
T ss_pred HHHHHHhCCCCEEEEeCCC---CCHHHHHHH----HHHHHHHHHHh--CCEEEEEC-----HHHHHHHcCCCEEEcChHH
Confidence 4778889999999886533 355555443 44556666665 67777764 46767788999999864 3
Q ss_pred CCHHHHHHHhCCCe
Q 015201 319 VDMADGRKRLGNDI 332 (411)
Q Consensus 319 ~di~~~~~~~g~~~ 332 (411)
.+..++++.+|...
T Consensus 288 L~~~~aR~ilg~~~ 301 (437)
T PRK12290 288 LEEANLAQLTDAGI 301 (437)
T ss_pred cchhhhhhhcCCCC
Confidence 45666777666443
No 451
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=49.35 E-value=2.5e+02 Score=27.02 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHH---HHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---------cHhHHh
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMW---EQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---------FLERMK 306 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f---~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---------~l~~~~ 306 (411)
+-+++.+++|++.+.++-+.....+.+.+ ++-++.-++++++.++++ |..+.++.-|... ++..+.
T Consensus 78 ~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 78 EDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDH--GIKPRCHLEDITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC--CCeEEEEEEcccCCCcccchHHHHHHHH
Confidence 34566778899998876554432222222 456777788889999987 5667777766542 234555
Q ss_pred c----CCCc-EEEc
Q 015201 307 G----TGVD-VIGL 315 (411)
Q Consensus 307 e----~g~d-~l~~ 315 (411)
+ .|++ .+++
T Consensus 156 ~~~~~~G~~~~i~l 169 (279)
T cd07947 156 KLSKESGIPVKIRL 169 (279)
T ss_pred HHHHHCCCCEEEEe
Confidence 5 8999 6876
No 452
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=49.26 E-value=77 Score=30.78 Aligned_cols=66 Identities=23% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-c-HhHHhcCC-Cc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-F-LERMKGTG-VD 311 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~-l~~~~e~g-~d 311 (411)
+-.++.++++.|+|||+|++ .+..-|+++ ++++.+.+... +|+++.. |... . .+.+.++| +.
T Consensus 166 deAI~Ra~aY~eAGAD~ifv---~~~~~~~~e--------i~~~~~~~~~p---~pv~~~~-~~~p~~~~~~l~~lg~~~ 230 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILI---HSRQKTPDE--------ILAFVKSWPGK---VPLVLVP-TAYPQLTEADIAALSKVG 230 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEe---cCCCCCHHH--------HHHHHHhcCCC---CCeEEec-CCCCCCCHHHHHHhcCCc
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
++++
T Consensus 231 ~v~~ 234 (290)
T TIGR02321 231 IVIY 234 (290)
T ss_pred EEEE
No 453
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=49.23 E-value=65 Score=31.76 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC-C-HHHH-HHHHHHHHHHHHHHHHhhCCCCCEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL-P-PHMW-EQWSEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i-S-p~~f-~ef~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
.++.+||.+.++++. .|+|.+.++=... |.. . |..+ -++=+..+++|-+.+ +++|+++
T Consensus 161 ~~~T~peeA~~Fv~~--------------TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~----~~vPLVL 222 (321)
T PRK07084 161 HTYTQPEEVEDFVKK--------------TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI----PGFPIVL 222 (321)
T ss_pred cccCCHHHHHHHHHH--------------hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc----CCCCEEE
Confidence 568899887777654 5788765443221 222 1 1000 023334444554444 2589999
Q ss_pred EecCCc---------------------c--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCC
Q 015201 294 YINGNG---------------------G--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSP 346 (411)
Q Consensus 294 H~CG~~---------------------~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt 346 (411)
|-.-.+ . .+...++.|+.-+|++..+. ...+++.+... -+.+||..+ ...
T Consensus 223 HGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~~~---~~~~d~~~~~~~~ 299 (321)
T PRK07084 223 HGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVFDEK---PEEFDPRKYLGPA 299 (321)
T ss_pred eCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHH
Confidence 986521 1 23444567888888765321 12234433211 123677654 356
Q ss_pred HHHHHHHHHHHH-HHhC
Q 015201 347 LPALTDEIQRVV-KCAG 362 (411)
Q Consensus 347 ~eeV~~ev~~~i-~~~~ 362 (411)
.+.+++.+++.| +.++
T Consensus 300 ~~av~~~v~~~i~~~~g 316 (321)
T PRK07084 300 RDELKKLYKHKIINVLG 316 (321)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 678888888888 5555
No 454
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=48.67 E-value=3.1e+02 Score=27.88 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---ccHhHHhcCCCcEEEcCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---GFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---~~l~~~~e~g~d~l~~d~ 317 (411)
++.+.++|+|.+.++-. + +++ ..++.++.+++. |+.+.+-.++-. ..++.+ ..++|.+.+..
T Consensus 243 v~~~a~aGAD~vTVH~e-a---~~~--------ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht 307 (391)
T PRK13307 243 ARMAADATADAVVISGL-A---PIS--------TIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHR 307 (391)
T ss_pred HHHHHhcCCCEEEEecc-C---CHH--------HHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEcc
Confidence 66778999999877532 1 121 355678889887 455555333322 245444 55777763321
Q ss_pred ----C------CCHHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHH
Q 015201 318 ----T------VDMADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHF 386 (411)
Q Consensus 318 ----~------~di~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~ 386 (411)
. -++.++++...+ .+.+-|||.+. . ++++++. |...+|++++-. -..-|-+.++.+
T Consensus 308 ~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~e-------t----i~~l~~a-GADivVVGsaIf-~a~Dp~~aak~l 374 (391)
T PRK13307 308 GIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVE-------N----VEEALKA-GADILVVGRAIT-KSKDVRRAAEDF 374 (391)
T ss_pred ccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHH-------H----HHHHHHc-CCCEEEEeHHHh-CCCCHHHHHHHH
Confidence 1 135556654222 36667777652 1 4455543 334677776521 122255666666
Q ss_pred HHHH
Q 015201 387 FEVG 390 (411)
Q Consensus 387 ~~a~ 390 (411)
.+..
T Consensus 375 ~~~i 378 (391)
T PRK13307 375 LNKL 378 (391)
T ss_pred HHhh
Confidence 5544
No 455
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.59 E-value=2.4e+02 Score=26.67 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKG 307 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e 307 (411)
++++.+.++|+|++.+.|- +++ ...++++.++++ |...+ ..|...+ .+..+.+
T Consensus 106 ~f~~~~~~aGvdgviipDl-----p~e--------e~~~~~~~~~~~--gl~~i-~lv~P~T~~eri~~i~~ 161 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-----PLE--------ESGDLVEAAKKH--GVKPI-FLVAPNADDERLKQIAE 161 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-----ChH--------HHHHHHHHHHHC--CCcEE-EEECCCCCHHHHHHHHH
Confidence 5667888999999988763 222 245677888887 44433 3443332 4544554
No 456
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.53 E-value=23 Score=34.19 Aligned_cols=59 Identities=20% Similarity=0.434 Sum_probs=39.4
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~ 317 (411)
++..+++|+|.|.+ | -|||++-++ .++.++.. ..+-..|+++ .+..+.++|+|+++...
T Consensus 207 a~ea~~~gaDiI~L-D----n~s~e~l~~--------av~~~~~~-----~~leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 207 LEEALELGVDAVLL-D----NMTPDTLRE--------AVAIVAGR-----AITEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHcCCCEEEe-C----CCCHHHHHH--------HHHHhCCC-----ceEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 33445779998843 3 367766554 34444422 2367778876 59999999999998753
No 457
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=48.19 E-value=2e+02 Score=26.93 Aligned_cols=107 Identities=13% Similarity=0.224 Sum_probs=53.9
Q ss_pred HHHHHHhhCCCCCEEEEecCC---cc-cHhHHhcCCCcE-EEcCCCCCHHHHHHHhC--CCeeEEccCCcCc----cC-C
Q 015201 278 IVSLVRTKCPETPIVLYINGN---GG-FLERMKGTGVDV-IGLDWTVDMADGRKRLG--NDISVQGNVDPAC----LF-S 345 (411)
Q Consensus 278 i~~~i~~~~~g~~~~~H~CG~---~~-~l~~~~e~g~d~-l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~----L~-g 345 (411)
.++.+.+.|++ .+.+|.... .. .+..+++.|+.+ +.+...+++..+...+. |.+.+|. |+|.. +. .
T Consensus 74 ~i~~~~~aGad-~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMs-V~PGf~GQ~fi~~ 151 (229)
T PRK09722 74 YIDQLADAGAD-FITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMT-VDPGFAGQPFIPE 151 (229)
T ss_pred HHHHHHHcCCC-EEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEE-EcCCCcchhccHH
Confidence 34445444433 256677643 12 357777777554 45555566666655543 3344444 55532 11 2
Q ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+-+.|+ ++|++++.. +-.+.+..+ .|+..+|+..+.++.-+
T Consensus 152 ~l~KI~-~lr~~~~~~-~~~~~IeVD----GGI~~~~i~~~~~aGad 192 (229)
T PRK09722 152 MLDKIA-ELKALRERN-GLEYLIEVD----GSCNQKTYEKLMEAGAD 192 (229)
T ss_pred HHHHHH-HHHHHHHhc-CCCeEEEEE----CCCCHHHHHHHHHcCCC
Confidence 233332 333444432 113555444 45668899888876444
No 458
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=48.16 E-value=3.2e+02 Score=27.92 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++ + +.+++.++..+++|
T Consensus 194 v~~~~~a~~~a~~eTG~~~~y~~NiT~~--------------------------~-----------~em~~ra~~~~~~G 236 (406)
T cd08207 194 VRAVMRVINDHAQRTGRKVMYAFNITDD--------------------------I-----------DEMRRNHDLVVEAG 236 (406)
T ss_pred HHHHHHHHHHHHHhhCCcceEEEecCCC--------------------------H-----------HHHHHHHHHHHHhC
Confidence 6778888888889988655444444442 1 11223345566799
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c--cH-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G--FL-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~--~l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+ +. ++.+.+ . .+.|+..|-.|.- . .+ ..+.=.|+|.+++
T Consensus 237 ~~~~mv~~~~~G~-~~----------l~~l~~----~-~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~ 300 (406)
T cd08207 237 GTCVMVSLNSVGL-SG----------LAALRR----H-SQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHV 300 (406)
T ss_pred CCeEEEeccccch-HH----------HHHHHh----c-CCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCcccc
Confidence 9987554344442 22 222222 1 2677777776541 1 12 2333469999875
Q ss_pred CC---C--C---CHHHHHHHhCCCeeEEcc-CCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcH
Q 015201 316 DW---T--V---DMADGRKRLGNDISVQGN-VDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPE 380 (411)
Q Consensus 316 d~---~--~---di~~~~~~~g~~~~l~G~-vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~ 380 (411)
.. . . +...+.+.+-. =+|+ +.+.+. - | ++.. +-+.++.+|..-+|+..|.++ -|+-+-
T Consensus 301 ~~~~Gkf~~~~~~~~~~~~~~~~---p~~~~~k~~~Pv~sgG~~~~~----vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~ 373 (406)
T cd08207 301 NGLASKFWESDDSVIESARACLT---PLGGPDDAAMPVFSSGQWGGQ----APPTYRRLGSVDLLYLAGGGIMAHPDGPA 373 (406)
T ss_pred CCCcCCcCCCcHHHHHHHHHHhC---chhccCCCeeEeccCCCCHhH----HHHHHHHhCCCceEEecCCceecCCCCch
Confidence 32 1 1 22233333322 1455 666542 1 1 3433 345666676556888888887 367788
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcccccc
Q 015201 381 EAVAHFFEVGKSMKYDNSSQNHVFEES 407 (411)
Q Consensus 381 Eni~a~~~a~~~yg~~~~~~~~~~~~~ 407 (411)
+..+||.+++...-....-++.+-+-|
T Consensus 374 aGa~A~rqA~ea~~~G~~l~e~Ak~~~ 400 (406)
T cd08207 374 AGVRSLRQAWEAAVAGVPLEEYAKTHP 400 (406)
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHhcCH
Confidence 999999998887643333333333333
No 459
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=48.02 E-value=2.9e+02 Score=27.44 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--CCC-------HHHH----HHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--c--
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGG--QLP-------PHMW----EQWSEPYIREIVSLVRTKCPETPIVLYINGNG--G-- 300 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~--~iS-------p~~f----~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--~-- 300 (411)
...+++..+.+.++|.-.-.++. +.. |+.= -+.+.++.+.+.+.. ++|+.+|.+-.. .
T Consensus 27 ~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-----~VPV~lHLDH~~~~~~e 101 (340)
T cd00453 27 NAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHY-----GVPVILHTDHCAKKLLP 101 (340)
T ss_pred HHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHC-----CCCEEEEcCCCCCCCHH
Confidence 34455666778887753333221 222 0000 233444444444433 689999997443 2
Q ss_pred cHhHHhcCC-----------CcEEEcCCC-C----CHHHHHHHh---C-CCeeE------EccCC-c--------CccCC
Q 015201 301 FLERMKGTG-----------VDVIGLDWT-V----DMADGRKRL---G-NDISV------QGNVD-P--------ACLFS 345 (411)
Q Consensus 301 ~l~~~~e~g-----------~d~l~~d~~-~----di~~~~~~~---g-~~~~l------~G~vd-~--------~~L~g 345 (411)
.+...++.| ++.+.+|.. . ++...++.. . -.+.+ +|+.. . ..++-
T Consensus 102 ~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT 181 (340)
T cd00453 102 WIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYT 181 (340)
T ss_pred HHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCC
Confidence 567788899 888877642 2 233333322 0 01233 22221 1 02345
Q ss_pred CHHHHHHHHHHHH-----HHhCCCCeEEeCCCCCC----CCCcHHHHHHHHHHH-HhcC
Q 015201 346 PLPALTDEIQRVV-----KCAGSRGHILNLGHGVL----VGTPEEAVAHFFEVG-KSMK 394 (411)
Q Consensus 346 t~eeV~~ev~~~i-----~~~~~~gfIls~gc~i~----~~tp~Eni~a~~~a~-~~yg 394 (411)
+|||+++-+++.= +.+ -.-+++-|++- +...++.++.+-+++ ++||
T Consensus 182 ~Peea~~Fv~~Tg~i~pvD~L---AvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~g 237 (340)
T cd00453 182 QPEDVDYAYTELSKISPRFTI---AASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHN 237 (340)
T ss_pred CHHHHHHHHHHhCCCCcceEE---eeecCccccCCCCCCCccCHHHHHHHHHHHHhhcc
Confidence 6888877775432 111 12344557764 446788888888877 4444
No 460
>PLN02858 fructose-bisphosphate aldolase
Probab=47.75 E-value=42 Score=39.80 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHHH-HhCCCEEEEecCCC-CCC---CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 241 IIYQV-ESGAHCIQIFDSWG-GQL---PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 241 ~~~~~-e~G~d~i~i~D~~~-~~i---Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
++.++ +.|+|.+.++=... |+. .| ++=+..+|+|-+.+... ++|+++|-+-.+. .+...++.|+.-+
T Consensus 1255 a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p----~l~~~~l~~i~~~~~~~--~vpLVlHGgSG~~~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1255 AKEFIDETGIDALAVCIGNVHGKYPASGP----NLRLDLLKELRALSSKK--GVLLVLHGASGLPESLIKECIENGVRKF 1328 (1378)
T ss_pred HHHHHHhcCCcEEeeecccccccCCCCCC----ccCHHHHHHHHHHhcCC--CCcEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 33444 45888765543211 222 13 23344566777666433 6899999885554 4777788999999
Q ss_pred EcCCCCCHHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 314 GLDWTVDMADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 314 ~~d~~~di~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
|+...+...-.+. +.+ -+.+|+..+ ....+.+++.+++.|+.++.
T Consensus 1329 Ni~T~~~~a~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs 1374 (1378)
T PLN02858 1329 NVNTEVRTAYMEA-LSS----PKKTDLIDVMSAAKEAMKAVVAEKLRLFGS 1374 (1378)
T ss_pred EeCHHHHHHHHHH-HhC----cccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9975322221121 222 234666544 45678899999999998864
No 461
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.20 E-value=3e+02 Score=27.27 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEec----CCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 234 TQAIADYIIYQVESGAHCIQIFD----SWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D----~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
++..++|.+...+.|+-.|+... +.+ .--.+..|.+-..|.++++++.+|+++.-+-+-++.+|..
T Consensus 36 t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~ 107 (337)
T PRK13523 36 TNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRK 107 (337)
T ss_pred CHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 45555666666666766654332 111 1122334556678999999999999842222233446664
No 462
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.02 E-value=1.1e+02 Score=28.22 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-c--HhHHhcCCCcEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-F--LERMKGTGVDVI 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~--l~~~~e~g~d~l 313 (411)
.+.++.+.+.|++.+++.|-.+.. =..+. ....+++.+.. ++|+++ +|.+. . ++.+.+.|++.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~-----~~~i~~i~~~~-----~~~l~v--~GGi~~~~~~~~~~~~Ga~~v 102 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKN-----AEAIEKIIEAV-----GVPVQL--GGGIRSAEDAASLLDLGVDRV 102 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCccc-----HHHHHHHHHHc-----CCcEEE--cCCcCCHHHHHHHHHcCCCEE
Confidence 345666778999999988854321 01111 22344444333 466654 67665 3 667888999998
Q ss_pred EcCCCC-----CHHHHHHHhCC
Q 015201 314 GLDWTV-----DMADGRKRLGN 330 (411)
Q Consensus 314 ~~d~~~-----di~~~~~~~g~ 330 (411)
.+.... -+.++.+.+|.
T Consensus 103 ~iGs~~~~~~~~~~~i~~~~g~ 124 (241)
T PRK13585 103 ILGTAAVENPEIVRELSEEFGS 124 (241)
T ss_pred EEChHHhhChHHHHHHHHHhCC
Confidence 875421 35777888874
No 463
>PLN02334 ribulose-phosphate 3-epimerase
Probab=46.75 E-value=2.4e+02 Score=26.02 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc--cHhHHhcCC-CcEE-
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG--FLERMKGTG-VDVI- 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~--~l~~~~e~g-~d~l- 313 (411)
++++.+.++|+|++.++...+. .+ ...+.++.+++. |..+.+ +|.. +. .+..+.+.| +|.+
T Consensus 79 d~~~~~~~~gad~v~vH~~q~~---~d--------~~~~~~~~i~~~--g~~iGl-s~~~~t~~~~~~~~~~~~~~Dyi~ 144 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQAS---TI--------HLHRLIQQIKSA--GMKAGV-VLNPGTPVEAVEPVVEKGLVDMVL 144 (229)
T ss_pred HHHHHHHHcCCCEEEEeecccc---ch--------hHHHHHHHHHHC--CCeEEE-EECCCCCHHHHHHHHhccCCCEEE
Confidence 4556668899999966544210 11 124556677765 443333 3322 22 345555553 7876
Q ss_pred --EcCCC-----C------CHHHHHHHhC-CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCc
Q 015201 314 --GLDWT-----V------DMADGRKRLG-NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTP 379 (411)
Q Consensus 314 --~~d~~-----~------di~~~~~~~g-~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp 379 (411)
.+... . .+.++++... -.+.+.|||++ + .++++++. |..++++++.= +..+-|
T Consensus 145 ~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~-------e----~i~~l~~a-Gad~vvvgsai-~~~~d~ 211 (229)
T PLN02334 145 VMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGP-------S----TIDKAAEA-GANVIVAGSAV-FGAPDY 211 (229)
T ss_pred EEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCH-------H----HHHHHHHc-CCCEEEEChHH-hCCCCH
Confidence 22211 1 1444555433 24667888854 2 33444444 33466666541 122336
Q ss_pred HHHHHHHHHHHHh
Q 015201 380 EEAVAHFFEVGKS 392 (411)
Q Consensus 380 ~Eni~a~~~a~~~ 392 (411)
.+.++.+.+..++
T Consensus 212 ~~~~~~l~~~~~~ 224 (229)
T PLN02334 212 AEVISGLRASVEK 224 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 6677766655443
No 464
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=46.64 E-value=61 Score=31.78 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
|++++++-.+++...+...-+++-+ .++|++.|.+-+..+++.+++.|.+
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~Vvls-GSlP~g~~~d~y~~li~~~~~~g~~ 161 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLS-GSLPPGVPPDAYAELIRILRQQGAK 161 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEe-CCCCCCCCHHHHHHHHHHHHhcCCe
Confidence 6677665555555545554544443 4789999999999999999988754
No 465
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=46.62 E-value=3.1e+02 Score=27.34 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCC-cc--cHhHHhcCCCcEEEcC
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP---ETPIVLYINGN-GG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~---g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~d 316 (411)
+++.|++++...++++++..+++ ++.+++..+ ...+.+-+..+ .+ .++.+++.|++.+++.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~l--------l~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiG 117 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERL--------LTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLG 117 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHH--------HHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEe
Confidence 46667776655567888776554 444444321 11222223322 22 4788999999998763
No 466
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=46.61 E-value=1e+02 Score=26.64 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHh----HHhcC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLE----RMKGT 308 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~----~~~e~ 308 (411)
+...+.++.+.+.|++.+.+.............. + +++..+.+.. +.|++.|...+.. .+. ...+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~----~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD----K---EVLKEVAAET-DLPLGVQLAINDAAAAVDIAAAAARAA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc----c---cHHHHHHhhc-CCcEEEEEccCCchhhhhHHHHHHHHc
Confidence 3455667777788999987765433211110000 0 2233333222 6788888865432 343 67788
Q ss_pred CCcEEEcCC
Q 015201 309 GVDVIGLDW 317 (411)
Q Consensus 309 g~d~l~~d~ 317 (411)
|+|.+.+..
T Consensus 84 g~d~v~l~~ 92 (200)
T cd04722 84 GADGVEIHG 92 (200)
T ss_pred CCCEEEEec
Confidence 999997754
No 467
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.37 E-value=1e+02 Score=26.24 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=8.6
Q ss_pred HhcCCCcEEEcCCCCCHH
Q 015201 305 MKGTGVDVIGLDWTVDMA 322 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~di~ 322 (411)
+.+.|++++++...+..+
T Consensus 25 l~~~GfeVi~LG~~v~~e 42 (134)
T TIGR01501 25 FTNAGFNVVNLGVLSPQE 42 (134)
T ss_pred HHHCCCEEEECCCCCCHH
Confidence 344555555554444433
No 468
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.28 E-value=2.5e+02 Score=26.15 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=77.2
Q ss_pred HHHHHHH-hCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc---HhHHhcCCCcEEE
Q 015201 240 YIIYQVE-SGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF---LERMKGTGVDVIG 314 (411)
Q Consensus 240 ~~~~~~e-~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~---l~~~~e~g~d~l~ 314 (411)
.++.+.+ .|+|.+.+.|-.+.. =.+.. .+.++++.+.+ +.| +..+|.+.. ++.+.+.|++-+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n-----~~~I~~i~~~~-----~~p--i~vGGGIrs~e~v~~~l~~Ga~kvv 103 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHARE-----FDYIKSLRRLT-----TKD--IEVGGGIRTKSQIMDYFAAGINYCI 103 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcch-----HHHHHHHHhhc-----CCe--EEEcCCcCCHHHHHHHHHCCCCEEE
Confidence 4555666 599999999955442 11111 33345555432 455 567888764 4556678999886
Q ss_pred cCCC--CC---HHHHHHHhCCCeeEEccCCcC---cc-CC----CHHHHHHHHHHHHHHhCCCCeEEeCCC--CCCCCCc
Q 015201 315 LDWT--VD---MADGRKRLGNDISVQGNVDPA---CL-FS----PLPALTDEIQRVVKCAGSRGHILNLGH--GVLVGTP 379 (411)
Q Consensus 315 ~d~~--~d---i~~~~~~~g~~~~l~G~vd~~---~L-~g----t~eeV~~ev~~~i~~~~~~gfIls~gc--~i~~~tp 379 (411)
+... .| +.++.++||+++++. +|.. .. .| +.-++.+.++++. ..+-+++|+..-. +...+.+
T Consensus 104 igt~a~~~~~~l~~~~~~fg~~ivvs--lD~~~g~v~~~gw~~~~~~~~~~~~~~~~-~~g~~~ii~tdi~~dGt~~G~~ 180 (234)
T PRK13587 104 VGTKGIQDTDWLKEMAHTFPGRIYLS--VDAYGEDIKVNGWEEDTELNLFSFVRQLS-DIPLGGIIYTDIAKDGKMSGPN 180 (234)
T ss_pred ECchHhcCHHHHHHHHHHcCCCEEEE--EEeeCCEEEecCCcccCCCCHHHHHHHHH-HcCCCEEEEecccCcCCCCccC
Confidence 6432 23 677888899875554 6642 11 22 2222334444443 3333577776654 3445667
Q ss_pred HHHHHHHHHH
Q 015201 380 EEAVAHFFEV 389 (411)
Q Consensus 380 ~Eni~a~~~a 389 (411)
.+-++.+.+.
T Consensus 181 ~~li~~l~~~ 190 (234)
T PRK13587 181 FELTGQLVKA 190 (234)
T ss_pred HHHHHHHHHh
Confidence 7767776654
No 469
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.09 E-value=2.7e+02 Score=26.48 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC---------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c--c
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG---------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G--F 301 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~---------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~--~ 301 (411)
.+..+++++.+.++|+|.|-++=+.++ +.+.+ +.+++.+..+. +.++..+.-... . .
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~---~~~~~~~~~~~~~~~~~ 87 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDE--------FLRRLLGDSKG---NTKIAVMVDYGNDDIDL 87 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHH--------HHHHHHhhhcc---CCEEEEEECCCCCCHHH
Confidence 345567777888999999876633221 22222 44555554431 345666655442 2 4
Q ss_pred HhHHhcCCCcEEEcC-CCCCHHHHH------HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 302 LERMKGTGVDVIGLD-WTVDMADGR------KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 302 l~~~~e~g~d~l~~d-~~~di~~~~------~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
++...+.|++.+.+. ...++.+++ +..|-++. .+-.+. ..-++|.+.+.++++.+. +...+.+.-.-+
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~-~~~~~a--~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G- 162 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVF-FNLMAI--SGYSDEELLELLELVNEI-KPDVFYIVDSFG- 162 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEE-EEEEee--cCCCHHHHHHHHHHHHhC-CCCEEEEecCCC-
Confidence 666778899997653 222343332 23343222 222222 125789998888887764 444555543322
Q ss_pred CCCCcHHHHHHHHHHHHhc
Q 015201 375 LVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a~~~y 393 (411)
-..|+.+..++.++++.
T Consensus 163 --~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 163 --SMYPEDIKRIISLLRSN 179 (266)
T ss_pred --CCCHHHHHHHHHHHHHh
Confidence 34577888888888764
No 470
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=45.96 E-value=2.4e+02 Score=29.17 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDV 312 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~ 312 (411)
...+.+++++++|+|+|.+.-..+. | ++..+.++.+++.+|+.+++. |+.. -...+.+.|+|.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~--~---------~~~~~~i~~i~~~~~~~~vi~---G~v~t~~~a~~l~~aGad~ 289 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH--S---------IYVIDSIKEIKKTYPDLDIIA---GNVATAEQAKALIDAGADG 289 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc--H---------hHHHHHHHHHHHhCCCCCEEE---EeCCCHHHHHHHHHhCCCE
Confidence 4456778889999999866332321 1 234455666666655677665 6653 357788899999
Q ss_pred EE
Q 015201 313 IG 314 (411)
Q Consensus 313 l~ 314 (411)
+-
T Consensus 290 i~ 291 (450)
T TIGR01302 290 LR 291 (450)
T ss_pred EE
Confidence 84
No 471
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=45.50 E-value=2.5e+02 Score=28.22 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHh--CCCeeEEccCCcCccCCCH
Q 015201 270 WSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRL--GNDISVQGNVDPACLFSPL 347 (411)
Q Consensus 270 f~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~--g~~~~l~G~vd~~~L~gt~ 347 (411)
|.....+++++..+++ |.++..|.+.....+....+.|+++.. ...+...+.+.. |. ..+.|. |..+.+..
T Consensus 211 ~~~e~i~~~v~~A~~~--g~~v~sH~~~~~~~i~~a~~~Gv~~~e--~~~~~e~~~~~~~~g~-~v~~~~--p~~~r~~~ 283 (383)
T PRK15446 211 YAPPNRRAIAALARAR--GIPLASHDDDTPEHVAEAHALGVAIAE--FPTTLEAARAARALGM-SVLMGA--PNVVRGGS 283 (383)
T ss_pred cCHHHHHHHHHHHHHC--CCceeecCCCCHHHHHHHHHcCCceee--CCCcHHHHHHHHHCCC-EEEeCC--cccccCCc
Confidence 4456788999999998 688877765444467888889999874 344555554433 32 334443 32233211
Q ss_pred HHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 348 PALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 348 eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
..-...++++++.+ -...+++++.
T Consensus 284 ~~~~~~~~~~~~~G--v~~~lgSD~~ 307 (383)
T PRK15446 284 HSGNVSALDLAAAG--LLDILSSDYY 307 (383)
T ss_pred ccchHhHHHHHHCC--CcEEEEcCCC
Confidence 11234445555442 2567888873
No 472
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=45.29 E-value=1.2e+02 Score=32.28 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc--------------Hh
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF--------------LE 303 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~--------------l~ 303 (411)
++.++.+.+.|||-+.+.|-.+..-++.. ++-....++++.+.+ .+| +-..|.+.. ++
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~-~~~~~~~i~~i~~~~-----~ip--~~vGGGIr~~~d~~~~~~~~~e~~~ 341 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLG-DLPMLEVLRRASENV-----FVP--LTVGGGIRDFTDANGRYYSSLEVAS 341 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCccc-chhHHHHHHHHHhhC-----CCC--EEEcCCccccccccccccchHHHHH
Confidence 35677788999999999986664323221 222344455555544 355 345666653 46
Q ss_pred HHhcCCCcEEEcCC---C--------------CCHHHHHHHhCCCeeEEccCCc
Q 015201 304 RMKGTGVDVIGLDW---T--------------VDMADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 304 ~~~e~g~d~l~~d~---~--------------~di~~~~~~~g~~~~l~G~vd~ 340 (411)
.+.+.|+|-+++.. . .=+.++.++||++ ++.-.||.
T Consensus 342 ~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q-~ivvsiD~ 394 (538)
T PLN02617 342 EYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ-AVVVSIDP 394 (538)
T ss_pred HHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCc-eEEEEEec
Confidence 67788999998753 1 1267788899875 44455664
No 473
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=45.22 E-value=1.3e+02 Score=30.01 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred HhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 246 ESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 246 e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
..++|++.+.=... ..++|+-+++|- -+.+.++.+.+.. ++|+++..+|... ....+.+.|+|.+.++
T Consensus 146 ~~~adal~l~l~~~qe~~~p~g~~~f~--~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 146 MIEADALQIHLNPLQELVQPEGDRDFR--GWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred hcCCCcEEEeCccchhhcCCCCcccHH--HHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 35788877753222 356666555542 2233444444433 6899999887643 2467788999999763
No 474
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.06 E-value=2.7e+02 Score=26.23 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC----C------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe---cCCcc
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWG----G------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI---NGNGG 300 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~----~------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~---CG~~~ 300 (411)
++..+++++.+.++|++.|-++-..+ + ..++. ...+++.+..+ +.++.... -++..
T Consensus 21 ~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~-------e~i~~~~~~~~----~~~~~~~~~~~~~~~~ 89 (263)
T cd07943 21 LEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDE-------EYLEAAAEALK----QAKLGVLLLPGIGTVD 89 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChH-------HHHHHHHHhcc----CCEEEEEecCCccCHH
Confidence 46667788889999999987663211 0 12221 12333333332 34443221 23333
Q ss_pred cHhHHhcCCCcEEEcC-CCCCHHHH------HHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 301 FLERMKGTGVDVIGLD-WTVDMADG------RKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 301 ~l~~~~e~g~d~l~~d-~~~di~~~------~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
.++...+.|++.+.+- ...+...+ .+..|. .+.+++-.. -.-+++++.+.++++.+.. ...+ +...+
T Consensus 90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~--~v~~~~~~~-~~~~~~~~~~~~~~~~~~G-~d~i--~l~DT 163 (263)
T cd07943 90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGM--DVVGFLMMS-HMASPEELAEQAKLMESYG-ADCV--YVTDS 163 (263)
T ss_pred HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCC--eEEEEEEec-cCCCHHHHHHHHHHHHHcC-CCEE--EEcCC
Confidence 5788888999998652 22222222 223353 344444111 1358898888888876653 2233 33333
Q ss_pred CCCCCcHHHHHHHHHHHHhc
Q 015201 374 VLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~y 393 (411)
+ .-..|+.+..+++.+++.
T Consensus 164 ~-G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 164 A-GAMLPDDVRERVRALREA 182 (263)
T ss_pred C-CCcCHHHHHHHHHHHHHh
Confidence 3 234577788888888764
No 475
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=44.82 E-value=1.2e+02 Score=30.82 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHhhCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCCCC--CCHH------------HHH
Q 015201 218 MCHTAPHVLRTLLSHLTQA---------------IADYIIYQVESGAHCIQIFDSWGGQ--LPPH------------MWE 268 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~---------------~~~~~~~~~e~G~d~i~i~D~~~~~--iSp~------------~f~ 268 (411)
.+.++|+.+.++++.+.+. +.+.++.+.++|+|+|.+.....+. +..+ -+-
T Consensus 148 ~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~g 227 (420)
T PRK08318 148 AVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHG 227 (420)
T ss_pred cccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcc
Confidence 4568999999999988653 3466777889999999865544331 1111 011
Q ss_pred HHHHHH----HHHHHHHHHhhC--CCCCEEEEecCCcc---c-HhHHhcCCCcEEEc
Q 015201 269 QWSEPY----IREIVSLVRTKC--PETPIVLYINGNGG---F-LERMKGTGVDVIGL 315 (411)
Q Consensus 269 ef~~Py----~k~i~~~i~~~~--~g~~~~~H~CG~~~---~-l~~~~e~g~d~l~~ 315 (411)
-+..|. -.+.+..+++.. +++|++ .+|.+. . ++.+ ..|++++.+
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIi--g~GGI~s~~da~e~i-~aGA~~Vqi 281 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPIS--GIGGIETWRDAAEFI-LLGAGTVQV 281 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEE--eecCcCCHHHHHHHH-HhCCChhee
Confidence 123333 234444444432 145654 678765 2 3444 489998854
No 476
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=44.66 E-value=42 Score=32.16 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCeEEeCCCCC--------------CCCCcHHHHHHHHHHHHhcCCCCC
Q 015201 345 SPLPALTDEIQRVVKCAGSRGHILNLGHGV--------------LVGTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 345 gt~eeV~~ev~~~i~~~~~~gfIls~gc~i--------------~~~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
-+.++.++-++++++-.++-+-++.+|..+ +--|-||-+.|+++.++++|.++.
T Consensus 11 ~syk~~r~sv~~~lel~gg~~~~i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~ 78 (293)
T COG2006 11 ESYKDTRKSVRTVLELLGGLEAFISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPV 78 (293)
T ss_pred CCcHHHHHHHHHHHHHccccccccCCCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCCcce
Confidence 566799999999999988633334455443 224779999999999999986543
No 477
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=44.56 E-value=1.8e+02 Score=28.12 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=37.8
Q ss_pred HHHHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 242 IYQVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 242 ~~~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
+...+.|++.|.+.-+.. +-. +.+ ++++.+++.. +.|+++..+........+.+.|+|.+.+
T Consensus 136 ~~~~~~g~~~i~l~~~~p~~~~~-------~~~----~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 136 RRAEAAGYKALVLTVDTPVLGRR-------LTW----DDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHcCCCEEEEecCCCCCCCC-------CCH----HHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 444567999987653322 111 222 3455555543 4688888764444567788899999865
No 478
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=44.44 E-value=70 Score=31.38 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=101.4
Q ss_pred ecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHH
Q 015201 192 FVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWS 271 (411)
Q Consensus 192 ~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~ 271 (411)
.-.|||...+.|+.. .-+.+-.|..+...+.++.-.+-..+.+.+.|+|++ =+|..+.-=.+++|-.+
T Consensus 158 ~PDGpfeNp~dLm~~----------~Ki~eA~e~~E~aa~h~t~Dmv~v~~km~~sgaDGv-NFDttgaaGd~Df~atL- 225 (466)
T PF09505_consen 158 TPDGPFENPGDLMKM----------FKIKEAQESMEHAAEHLTRDMVWVMQKMYESGADGV-NFDTTGAAGDGDFYATL- 225 (466)
T ss_pred CCCCCCCCHHHHHHH----------hhHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCcc-cccccccCCChhHHHHH-
Confidence 335788877777641 134456678888899999999999999999999998 45766654566666542
Q ss_pred HHHHHHHHHHHHhhCCCCC--------EEEEecCC-----------cc--cHhHHhcCCCcEEEcCC-----CC---CHH
Q 015201 272 EPYIREIVSLVRTKCPETP--------IVLYINGN-----------GG--FLERMKGTGVDVIGLDW-----TV---DMA 322 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~--------~~~H~CG~-----------~~--~l~~~~e~g~d~l~~d~-----~~---di~ 322 (411)
+.++++++..|+.. .++-.+|+ +. ..+...+.|++++.+-- .. ++.
T Consensus 226 -----~AvE~Lr~~fP~m~IE~GMAgE~vLGMHG~leYdg~~LAGL~PHqQa~l~~kAGanvFGPVvNtntS~t~~WNla 300 (466)
T PF09505_consen 226 -----KAVEALRKKFPNMYIEMGMAGEFVLGMHGELEYDGVTLAGLWPHQQAPLAEKAGANVFGPVVNTNTSKTSPWNLA 300 (466)
T ss_pred -----HHHHHHHHhCcceeEecccccceeeecccceeECCEeeeccCcccccchHHhcCcceecceecCCCccccchHHH
Confidence 34555555544322 22333333 11 23556678999985411 11 222
Q ss_pred -------HHHHHhCCCeeEE-------ccCCcCccC-CCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHH
Q 015201 323 -------DGRKRLGNDISVQ-------GNVDPACLF-SPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAH 385 (411)
Q Consensus 323 -------~~~~~~g~~~~l~-------G~vd~~~L~-gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a 385 (411)
.+.+.- .+.+. |||+- +. -..+.+.+..+.+.+..+--|+.++.| =|.+.|..++.|
T Consensus 301 RaVTf~Ka~veas--~iP~HvnmGMGVGGiPm--~eTpP~DavsRaSkAmvEi~~vDGi~iGvG--Dp~gM~isH~ma 372 (466)
T PF09505_consen 301 RAVTFIKAAVEAS--PIPCHVNMGMGVGGIPM--LETPPIDAVSRASKAMVEIAGVDGIAIGVG--DPMGMPISHIMA 372 (466)
T ss_pred HHHHHHHHHHhcC--CCCcccccCcCcCCccc--ccCCCcHHHHHHHHHHHHHhcCCceeeccC--CcccChhHHHHh
Confidence 222221 23332 22221 22 345778888888888877567666554 456677766654
No 479
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.29 E-value=2.9e+02 Score=26.39 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCEEEEec--CCC----C--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHH
Q 015201 238 ADYIIYQVESGAHCIQIFD--SWG----G--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERM 305 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D--~~~----~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~ 305 (411)
.+.++.+.++|+|+|-+.= +.. . .-+| ....++++.+++.. ++|+++-.-.+.. +.+.+
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~--------~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~ 175 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP--------EAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAA 175 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH--------HHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHH
Confidence 3445566678999986632 111 1 1334 34456677777664 6788876644432 23556
Q ss_pred hcCCCcEEEc
Q 015201 306 KGTGVDVIGL 315 (411)
Q Consensus 306 ~e~g~d~l~~ 315 (411)
.+.|+|.+.+
T Consensus 176 ~~~G~d~i~~ 185 (296)
T cd04740 176 EEAGADGLTL 185 (296)
T ss_pred HHcCCCEEEE
Confidence 7789998754
No 480
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=44.22 E-value=2.7e+02 Score=25.91 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCC------CCCHHHHHHHHH-------------HHHHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGG------QLPPHMWEQWSE-------------PYIREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~------~iSp~~f~ef~~-------------Py~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
+.++++.++|+|.+.+ |=+-| -+.|...+..-. +. .+.++.+-+++++ .+.+|.--..
T Consensus 20 ~el~~~~~agad~iH~-DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p-~~~i~~fa~agad-~It~H~E~~~ 96 (220)
T COG0036 20 EELKALEAAGADLIHI-DVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENP-DRYIEAFAKAGAD-IITFHAEATE 96 (220)
T ss_pred HHHHHHHHcCCCEEEE-eccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH-HHHHHHHHHhCCC-EEEEEeccCc
Confidence 4456777889998764 32221 255544333211 01 2333444444333 2566766322
Q ss_pred c---cHhHHhcCCCcE-EEcCCCCCHHHHHHHhCC-CeeEEccCCcCc----cC-CCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 300 G---FLERMKGTGVDV-IGLDWTVDMADGRKRLGN-DISVQGNVDPAC----LF-SPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 300 ~---~l~~~~e~g~d~-l~~d~~~di~~~~~~~g~-~~~l~G~vd~~~----L~-gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
. .+.++++.|+.+ +.+.+.+.+..+...+.+ ++++.=.|+|.. +. .+-|.| +++|+.++. .+.+.+.
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki-~~lr~~~~~--~~~~~Ie 173 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKI-RELRAMIDE--RLDILIE 173 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHH-HHHHHHhcc--cCCeEEE
Confidence 2 256677777654 455555555555444331 233333466642 11 222333 223333333 1244443
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHh
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+-.|+..||+..+.++.-+
T Consensus 174 ----VDGGI~~~t~~~~~~AGad 192 (220)
T COG0036 174 ----VDGGINLETIKQLAAAGAD 192 (220)
T ss_pred ----EeCCcCHHHHHHHHHcCCC
Confidence 4455667888877765443
No 481
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=43.98 E-value=2.6e+02 Score=26.21 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC-Cc---c--cHhHHhcCCCcE--EEcCCCCCH
Q 015201 250 HCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING-NG---G--FLERMKGTGVDV--IGLDWTVDM 321 (411)
Q Consensus 250 d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG-~~---~--~l~~~~e~g~d~--l~~d~~~di 321 (411)
+++.+++---...+++ -..++++-++.+++. ++|+++|.=- +- + .++.+.+.|++- +-+|. ++.
T Consensus 96 ~VvAiGEiGLe~~t~~-----E~evf~~QL~LA~e~--dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH-~N~ 167 (254)
T COG1099 96 DVVAIGEIGLEEATDE-----EKEVFREQLELAREL--DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDH-VNE 167 (254)
T ss_pred CeeEeeecccccCCHH-----HHHHHHHHHHHHHHc--CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhc-ccH
Confidence 3444444222345665 345667777788887 8999999853 32 2 346666666543 23443 356
Q ss_pred HHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 322 ADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 322 ~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
..+...++... +-|+--+--.-|++|. -+++++.+..+||++++|+-.
T Consensus 168 etv~~vld~e~--~vGlTvqPgKlt~~eA----veIV~ey~~~r~ilnSD~~s~ 215 (254)
T COG1099 168 ETVDEVLDEEF--YVGLTVQPGKLTVEEA----VEIVREYGAERIILNSDAGSA 215 (254)
T ss_pred HHHHHHHhccc--eEEEEecCCcCCHHHH----HHHHHHhCcceEEEecccccc
Confidence 66666665432 2222222123466544 455666667799999999864
No 482
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=43.85 E-value=1.2e+02 Score=30.15 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l 313 (411)
..++++.+.+.|+|+|.+.|+. ++..+++.+|+.|+.+=.-.+.+ -+..+.+.|+..+
T Consensus 81 ~~~~l~~l~e~GvDaviv~Dpg-------------------~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 81 LERYLDRLVELGVDAVIVADPG-------------------LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred HHHHHHHHHHcCCCEEEEcCHH-------------------HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE
Confidence 5577788899999999887753 35667777777875443333433 3788999997776
Q ss_pred EcCCCCCHHHHHHHhCC--C----eeEEccCCc
Q 015201 314 GLDWTVDMADGRKRLGN--D----ISVQGNVDP 340 (411)
Q Consensus 314 ~~d~~~di~~~~~~~g~--~----~~l~G~vd~ 340 (411)
-+....++.++++.... . +-+.|.+..
T Consensus 142 Vl~rEls~~ei~~i~~~~~~veiEvfVhGalci 174 (347)
T COG0826 142 VLPRELSLEEIKEIKEQTPDVEIEVFVHGALCI 174 (347)
T ss_pred EeCccCCHHHHHHHHHhCCCceEEEEEecchhh
Confidence 65555555555444322 1 445676654
No 483
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=43.46 E-value=31 Score=33.71 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHH------hCCCEEEEecCC--C---CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHH
Q 015201 239 DYIIYQVE------SGAHCIQIFDSW--G---GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERM 305 (411)
Q Consensus 239 ~~~~~~~e------~G~d~i~i~D~~--~---~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~ 305 (411)
+-++..++ +|+|.| +.|.+ . .--||++-++. ++.+++. ..+-..|+++ .+..+
T Consensus 214 eea~ea~~~~~~~~agaDiI-mLDnm~~~~~~~~~~~e~l~~a--------v~~~~~~-----~~lEaSGGIt~~ni~~y 279 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRV-MLDNMVVPLENGDVDVSMLKEA--------VELINGR-----FETEASGNVTLDTVHKI 279 (308)
T ss_pred HHHHHHHHhcccccCCCCEE-EeCCCcccccccCCCHHHHHHH--------HHhhCCC-----ceEEEECCCCHHHHHHH
Confidence 34555678 999998 44554 1 12377776654 3334322 3466778877 58999
Q ss_pred hcCCCcEEEcCC
Q 015201 306 KGTGVDVIGLDW 317 (411)
Q Consensus 306 ~e~g~d~l~~d~ 317 (411)
..+|+|+++...
T Consensus 280 A~tGVD~Is~Ga 291 (308)
T PLN02716 280 GQTGVTYISSGA 291 (308)
T ss_pred HHcCCCEEEeCc
Confidence 999999998753
No 484
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=43.22 E-value=3.8e+02 Score=27.39 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=32.4
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC----CCCEEEEecCC-cc--cHhHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP----ETPIVLYINGN-GG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~----g~~~~~H~CG~-~~--~l~~~~e~g~d~l~~ 315 (411)
+..+.++....++++++..+++ ++.+++..+ +.-+.+=+-.+ .+ .++.+++.|++.+++
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~L--------l~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvsl 157 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKL--------FDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSI 157 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHH--------HHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEE
Confidence 4455565555568999876653 344433221 11111112122 22 578888999999876
No 485
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.08 E-value=3e+02 Score=26.16 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHhCCCEEEEec--CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHhcCCCcE
Q 015201 241 IIYQVESGAHCIQIFD--SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG------FLERMKGTGVDV 312 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D--~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~e~g~d~ 312 (411)
++.+.++|+|+|-+.- +.... .....+ -.....++++.+++.. ++|+++-.-+... ..+.+.+.|+|.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~~~-~~~~~~--~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNVGG-GRQLGQ--DPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCCCC-Cccccc--CHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4455677999986532 22111 111111 1234566777777654 6788877665542 236677889999
Q ss_pred EEcCC
Q 015201 313 IGLDW 317 (411)
Q Consensus 313 l~~d~ 317 (411)
+.+..
T Consensus 193 i~~~~ 197 (289)
T cd02810 193 LTAIN 197 (289)
T ss_pred EEEEc
Confidence 97643
No 486
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=42.96 E-value=2.8e+02 Score=25.71 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
+.++.+.++|+|.+.+ |=+-|-+.|.. .|.. ++++.++++++.+++-+|.--+.. .++.+.+.|+|.+.+.
T Consensus 23 ~~~~~l~~~~~~~~H~-DimDg~fvpn~--~~G~----~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 23 DEAQDVLSGGADWLHV-DVMDGHFVPNL--SFGP----PVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred HHHHHHHHcCCCEEEE-ecccCccCCCc--CcCH----HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 4566777889998764 43323233321 1111 335566665556778888875543 4788999999998764
No 487
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=42.86 E-value=1.2e+02 Score=28.96 Aligned_cols=120 Identities=12% Similarity=0.137 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
+...++...++|++.+ -++.+-.--||-.|.-+-..-++-+.+..++. |.|++--+ =+...++.+.++ +|++.+.
T Consensus 61 i~~~A~~vk~~Ga~~l-RGgafKPRTSPYsFQGlge~gL~~l~~a~~~~--Gl~vvtEv-m~~~~~e~~~~y-~DilqvG 135 (286)
T COG2876 61 VRETAESVKAAGAKAL-RGGAFKPRTSPYSFQGLGEEGLKLLKRAADET--GLPVVTEV-MDVRDVEAAAEY-ADILQVG 135 (286)
T ss_pred HHHHHHHHHHcchhhc-cCCcCCCCCCcccccccCHHHHHHHHHHHHHc--CCeeEEEe-cCHHHHHHHHhh-hhHHHhc
Confidence 3445667778899976 44444445677776665555555555555555 67765433 223356777777 7887765
Q ss_pred CC--CCHHHHHHHhCCCeeEEccCC-cCcc----CCCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 317 WT--VDMADGRKRLGNDISVQGNVD-PACL----FSPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 317 ~~--~di~~~~~~~g~~~~l~G~vd-~~~L----~gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
.. .|..-+++ .| +.+ |.+| ..|-||.-..+.-++..+ +++.||+-
T Consensus 136 ARNMQNF~LLke-~G-------~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCE 187 (286)
T COG2876 136 ARNMQNFALLKE-VG-------RQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCE 187 (286)
T ss_pred ccchhhhHHHHH-hc-------ccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEe
Confidence 42 35555555 33 333 2333 258888888887777754 56788853
No 488
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=42.57 E-value=4.5e+02 Score=28.08 Aligned_cols=131 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC------EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHHh
Q 015201 235 QAIADYIIYQVESGAH------CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d------~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~~ 306 (411)
+++++.+++..++|++ .|.+.|..|- ..|..+.+++....+++-+.. ++++-+|.+-+... + ..+.
T Consensus 184 ~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~-a~P~~~~~~i~~l~~~~~~~~-----~~~l~vH~HND~GlAvANsla 257 (564)
T TIGR00970 184 EFAKEVCEAVKEVWAPTPERPIIFNLPATVEM-TTPNVYADSIEYFSTNIAERE-----KVCLSLHPHNDRGTAVAAAEL 257 (564)
T ss_pred HHHHHHHHHHHHhCCCccCCeeEEEeccccCc-cCHHHHHHHHHHHHHhcCccc-----CceEEEEECCCCChHHHHHHH
Q ss_pred --cCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHH
Q 015201 307 --GTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVA 384 (411)
Q Consensus 307 --e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~ 384 (411)
+.|++.++ .|+.|. -...=+-.-|++.-..... ++.++.+.+++.
T Consensus 258 Av~aGa~~v~-----------------gt~~G~-GERaGNa~le~lv~~L~~~---------------g~~t~idl~~L~ 304 (564)
T TIGR00970 258 GFLAGADRIE-----------------GCLFGN-GERTGNVDLVTLALNLYTQ---------------GVSPNLDFSNLD 304 (564)
T ss_pred HHHhCCCEEE-----------------eecCcC-CccccCccHHHHHHHHHhc---------------CCCCCcCHHHHH
Q ss_pred HHHHHHHhcCCCCCCCCccc
Q 015201 385 HFFEVGKSMKYDNSSQNHVF 404 (411)
Q Consensus 385 a~~~a~~~yg~~~~~~~~~~ 404 (411)
.+.+.+.++..-++..+..+
T Consensus 305 ~~s~~v~~~~~~~i~~~~Pi 324 (564)
T TIGR00970 305 EIRRTVEYCNKIPVHERHPY 324 (564)
T ss_pred HHHHHHHHHhCCCCCCCCCc
No 489
>PRK15452 putative protease; Provisional
Probab=42.46 E-value=1.2e+02 Score=31.23 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l 313 (411)
..++++.+.+.|+|+|.+.| ++- +..+++..|+.++..-..-++. -+..+.+.|++.+
T Consensus 78 ~~~~l~~l~~~gvDgvIV~d-~G~------------------l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rv 138 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIMSD-PGL------------------IMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRV 138 (443)
T ss_pred HHHHHHHHHhCCCCEEEEcC-HHH------------------HHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEE
Confidence 34456677788999997654 221 3455555455554333333333 2688999999999
Q ss_pred EcCCCCCHHHHHHHh---CC---CeeEEccCCc
Q 015201 314 GLDWTVDMADGRKRL---GN---DISVQGNVDP 340 (411)
Q Consensus 314 ~~d~~~di~~~~~~~---g~---~~~l~G~vd~ 340 (411)
.+....++.++++.. .+ .+.+.|.+.-
T Consensus 139 vLSrELsl~EI~~i~~~~~~~elEvfVHGalc~ 171 (443)
T PRK15452 139 ILSRELSLEEIEEIRQQCPDMELEVFVHGALCM 171 (443)
T ss_pred EECCcCCHHHHHHHHhhCCCCCEEEEEEccchh
Confidence 888888888887743 21 2466777765
No 490
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.33 E-value=2.5e+02 Score=25.89 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSW-GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~-~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~ 312 (411)
..++++.+.+.|++.+.+.+-. .+..++..| ..++++.+.+ .+|++ .+|.+. .+..+.+.|++.
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~-----~~i~~i~~~~-----~iPvi--a~GGI~~~~di~~~~~~Ga~g 218 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNT-----EPVKELVDSV-----DIPVI--ASGGVTTLDDLRALKEAGAAG 218 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCH-----HHHHHHHHhC-----CCCEE--EeCCCCCHHHHHHHHHcCCCE
Confidence 4667777788999999877632 122233222 2234444443 46744 566654 365678889998
Q ss_pred EEcC-----CCCCHHHHHHH
Q 015201 313 IGLD-----WTVDMADGRKR 327 (411)
Q Consensus 313 l~~d-----~~~di~~~~~~ 327 (411)
+.+. ...++.++++.
T Consensus 219 v~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 219 VVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred EEEEHHHhcCCcCHHHHHHH
Confidence 7542 33466666554
No 491
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=42.18 E-value=4.2e+02 Score=27.52 Aligned_cols=141 Identities=12% Similarity=0.183 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH
Q 015201 224 HVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL 302 (411)
Q Consensus 224 e~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l 302 (411)
|.+.+.++.+.+. .+.+.-.+.++|+|.+....+ .|+.+ .++++.+.+.. +.|+. +|+... .+
T Consensus 105 e~i~~r~~~~~~~--~~~rvG~~~~AD~IaL~~~s~---dp~~v--------~~~Vk~V~~~~-dvPLS--IDT~dpevl 168 (450)
T PRK04165 105 EEIDARLKKINNF--QFERVGEILKLDMVALRNASG---DPEKF--------AKAVKKVAETT-DLPLI--LCSEDPAVL 168 (450)
T ss_pred HHHHHHHHHhhcc--hHhhhcccccCCEEEEeCCCC---CHHHH--------HHHHHHHHHhc-CCCEE--EeCCCHHHH
Confidence 4455555555444 222222345699998876555 56533 44455555432 67765 444433 56
Q ss_pred hHHhcCCCc----EEEcCCC--CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC-CC
Q 015201 303 ERMKGTGVD----VIGLDWT--VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG-VL 375 (411)
Q Consensus 303 ~~~~e~g~d----~l~~d~~--~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~-i~ 375 (411)
+.-.+.|.+ +.+.... -.+.++.+.+|-.+++++. ..+...+-+.++.+. |=...||.|+.+ +.
T Consensus 169 eaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~--------dl~~L~~lv~~~~~~-GI~dIILDPg~ggf~ 239 (450)
T PRK04165 169 KAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP--------NLEELKELVEKLQAA-GIKDLVLDPGTENIK 239 (450)
T ss_pred HHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch--------hHHHHHHHHHHHHHc-CCCcEEECCCCchhh
Confidence 766666665 3344432 2344556677766666542 123333333333332 226899999986 33
Q ss_pred CCCcHHHHHHHHHHHH
Q 015201 376 VGTPEEAVAHFFEVGK 391 (411)
Q Consensus 376 ~~tp~Eni~a~~~a~~ 391 (411)
-..+|+..+.+++-
T Consensus 240 --ksl~~~~~iRr~Al 253 (450)
T PRK04165 240 --ETLDDFVQIRRAAI 253 (450)
T ss_pred --hhHHHHHHHHhhhh
Confidence 33588887777644
No 492
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=41.82 E-value=3.3e+02 Score=26.32 Aligned_cols=141 Identities=9% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCC-CCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSW-GGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~-~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
+...+++..+.+...|.-..+. ..+ .+. +.+.++.+.+.+... .++|+.+|.+-..+ .+...++.|++.
T Consensus 31 ~~avi~AAe~~~sPvIiq~~~~~~~~~~~~----~~~~~~~~~~a~~~~---~~VPV~lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 31 TQAILAAAEEEKSPVILGVSEGAARHMTGF----KTVVAMVKALIEEMN---ITVPVAIHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred HHHHHHHHHHHCCCEEEEcCcchhhhcCCH----HHHHHHHHHHHHHcC---CCCcEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3345556667788876432222 223 332 234455555555332 13799999974433 567788899999
Q ss_pred EEcCCC-CC----HHHHH------HHhCCCeeE------EccC-Cc----CccCCCHHHHHHHHHHH-HHHhCCCCeEEe
Q 015201 313 IGLDWT-VD----MADGR------KRLGNDISV------QGNV-DP----ACLFSPLPALTDEIQRV-VKCAGSRGHILN 369 (411)
Q Consensus 313 l~~d~~-~d----i~~~~------~~~g~~~~l------~G~v-d~----~~L~gt~eeV~~ev~~~-i~~~~~~gfIls 369 (411)
+.+|.. .+ +...| ..+| +.+ .|+. |- ..++-+||+..+-+++. ++.+ -.-++
T Consensus 104 VM~DgS~lp~eeNi~~Trevv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L---AvaiG 178 (285)
T PRK07709 104 VMIDASHHPFEENVETTKKVVEYAHARN--VSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL---APALG 178 (285)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE---EEeec
Confidence 987642 22 32222 2233 222 2222 11 12356888887777654 1211 33355
Q ss_pred CCCCCC---CCCcHHHHHHHHHH
Q 015201 370 LGHGVL---VGTPEEAVAHFFEV 389 (411)
Q Consensus 370 ~gc~i~---~~tp~Eni~a~~~a 389 (411)
+-|++. |...++.++.+.+.
T Consensus 179 t~HG~Y~~~p~L~~~~L~~I~~~ 201 (285)
T PRK07709 179 SVHGPYKGEPNLGFAEMEQVRDF 201 (285)
T ss_pred ccccCcCCCCccCHHHHHHHHHH
Confidence 567775 44566666665444
No 493
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=41.52 E-value=1.1e+02 Score=32.12 Aligned_cols=117 Identities=16% Similarity=0.039 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCEEEEecCCC---CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----ccHhHHhcCCCc
Q 015201 239 DYIIYQVESGAHCIQIFDSWG---GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----GFLERMKGTGVD 311 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~---~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----~~l~~~~e~g~d 311 (411)
+.++.+.+.+...+.+.|+-+ |+++.+...+...-... ....++.. |.-++-=.+|-. ...+.+.+.|+|
T Consensus 186 eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~--~~~~~d~~-~~l~vgaavg~~~~~~~r~~~l~~ag~d 262 (505)
T PLN02274 186 EAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKL--GKPSVGKD-GKLLVGAAIGTRESDKERLEHLVKAGVD 262 (505)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCc--cccccCCC-CCEEEEEEEcCCccHHHHHHHHHHcCCC
Confidence 445556677788777776433 68888776554321110 00011111 221222234432 246888999999
Q ss_pred EEEcCCC--------CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 312 VIGLDWT--------VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 312 ~l~~d~~--------~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
++.+|.. ..++++|+.+++-.+++|||.+ +|+ ++++++.+.+ +.+++
T Consensus 263 ~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t------~e~----a~~a~~aGaD-~i~vg 317 (505)
T PLN02274 263 VVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT------MYQ----AQNLIQAGVD-GLRVG 317 (505)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC------HHH----HHHHHHcCcC-EEEEC
Confidence 9988642 1477888888766666788854 554 4555554333 34333
No 494
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.44 E-value=2.8e+02 Score=25.36 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~ 314 (411)
-+-+++++++|+|.+.+ |-+-+ |.+-= .|.-|-.+.+-+.... ....-.|.= -+.. +++.+.+.|++.+.
T Consensus 20 ~~e~~~~l~~GadwlHl-DVMDg~FVpNi---T~G~pvV~slR~~~~~---~~ffD~HmMV~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 20 AAECKKMLDAGADWLHL-DVMDGHFVPNI---TFGPPVVESLRKHTGA---DPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred HHHHHHHHHcCCCeEEE-eeecccccCCc---ccchHHHHHHHhccCC---CcceeEEEeecCHHHHHHHHHhcCcceEE
Confidence 34566788999998755 33333 33221 2334444444333311 111223332 2223 56777888888775
Q ss_pred c--CCCCCHHHHHHHhC
Q 015201 315 L--DWTVDMADGRKRLG 329 (411)
Q Consensus 315 ~--d~~~di~~~~~~~g 329 (411)
+ +...+..++.+++.
T Consensus 93 fH~E~~q~~~~lv~~ir 109 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIR 109 (224)
T ss_pred EEEeeccCHHHHHHHHH
Confidence 4 33345555555443
No 495
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=41.36 E-value=3.5e+02 Score=26.50 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhC--CCEEEEec-CCCCCCCH---H-HHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc---
Q 015201 232 HLTQAIADYIIYQVESG--AHCIQIFD-SWGGQLPP---H-MWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--- 300 (411)
Q Consensus 232 ~~~d~~~~~~~~~~e~G--~d~i~i~D-~~~~~iSp---~-~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--- 300 (411)
.+.++....+..+.+.| +|.++++. ..++|+=| - .|.++. ..+++-+.++++-.|.+.+++|.- |...
T Consensus 153 avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a-~L~n~g~~avrev~p~ikv~lHla~g~~n~~y 231 (403)
T COG3867 153 AVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMA-ALLNAGIRAVREVSPTIKVALHLAEGENNSLY 231 (403)
T ss_pred HHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHH-HHHHHHhhhhhhcCCCceEEEEecCCCCCchh
Confidence 44566666777888888 57788886 44557622 1 555544 344555566777777888999986 4332
Q ss_pred --cHhHHhcC--CCcEEEcCC-----------CCCHHHHHHHhCCCeeE
Q 015201 301 --FLERMKGT--GVDVIGLDW-----------TVDMADGRKRLGNDISV 334 (411)
Q Consensus 301 --~l~~~~e~--g~d~l~~d~-----------~~di~~~~~~~g~~~~l 334 (411)
+.+.+-+. .+|++.... ...+..+..+|++++.+
T Consensus 232 ~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY~K~VmV 280 (403)
T COG3867 232 RWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRYHKDVMV 280 (403)
T ss_pred hHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHhcCeEEE
Confidence 23666654 567775432 13577788888876554
No 496
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=41.06 E-value=4.5e+02 Score=27.56 Aligned_cols=62 Identities=19% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCCc---c--cHhHHhcCCCcEEEcCC
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP---ETPIVLYINGNG---G--FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~---g~~~~~H~CG~~---~--~l~~~~e~g~d~l~~d~ 317 (411)
+++.|.++...-++++++.+++++ +.+++..+ +..-+.-.||+. + .++.+++.|++.+++.-
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll--------~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGv 287 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLL--------EEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINP 287 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHH--------HHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcC
Confidence 456677777777789998876644 33333211 111222335652 2 47889999999988743
No 497
>PLN02428 lipoic acid synthase
Probab=40.52 E-value=3.9e+02 Score=26.71 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=77.8
Q ss_pred HHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-----CCcccHhHHhcCCCcEEEc--C
Q 015201 244 QVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-----GNGGFLERMKGTGVDVIGL--D 316 (411)
Q Consensus 244 ~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-----G~~~~l~~~~e~g~d~l~~--d 316 (411)
..+.|++.+.+...-.+-. | +....++.++++.+++..|++ .++.. |+...++.+++.|+++++. +
T Consensus 142 v~~~Glk~vvltSg~rddl-~----D~ga~~~~elir~Ir~~~P~i--~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlE 214 (349)
T PLN02428 142 IASWGVDYVVLTSVDRDDL-P----DGGSGHFAETVRRLKQLKPEI--LVEALVPDFRGDLGAVETVATSGLDVFAHNIE 214 (349)
T ss_pred HHHcCCCEEEEEEcCCCCC-C----cccHHHHHHHHHHHHHhCCCc--EEEEeCccccCCHHHHHHHHHcCCCEEccCcc
Confidence 4456877765432111111 1 245668888899999875443 22322 2223678999999999853 2
Q ss_pred C-----------CCCHHHHHHHhCCCeeEEccCCc--Ccc--C-CCHHHHHHHHHHHHHHhCC----CCeEEeCC-CC--
Q 015201 317 W-----------TVDMADGRKRLGNDISVQGNVDP--ACL--F-SPLPALTDEIQRVVKCAGS----RGHILNLG-HG-- 373 (411)
Q Consensus 317 ~-----------~~di~~~~~~~g~~~~l~G~vd~--~~L--~-gt~eeV~~ev~~~i~~~~~----~gfIls~g-c~-- 373 (411)
. ..+.....+.+..=.....|+.. ..+ + -|+||+.+.++.+.+..-+ |.|+ .|+ ..
T Consensus 215 Tv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h~~ 293 (349)
T PLN02428 215 TVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRHLP 293 (349)
T ss_pred CcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcceee
Confidence 1 11212111111000001112222 122 2 3677776665555443322 3332 333 22
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Q 015201 374 VLVGTPEEAVAHFFEVGKSMKYDNSSQNH 402 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~yg~~~~~~~~ 402 (411)
+..-++||....+-+.+.+.|-.-....+
T Consensus 294 v~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 294 VKEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred eecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 34568899999999999998855444444
No 498
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=40.26 E-value=1.5e+02 Score=29.66 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+..+|.-..+.. .+++.+ ++.++.+.+.+ ..+.+|+.+|.+-... .+..-++.|++.+
T Consensus 31 ~~avi~AAEe~~sPvIlq~s~~~~~~~g~~----~~~~~v~~~ae----~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSV 102 (347)
T PRK13399 31 ILAIMEAAEATDSPVILQASRGARKYAGDA----MLRHMVLAAAE----MYPDIPICLHQDHGNSPATCQSAIRSGFTSV 102 (347)
T ss_pred HHHHHHHHHHhCCCEEEECCcchhhhCCHH----HHHHHHHHHHH----hcCCCcEEEECCCCCCHHHHHHHHhcCCCEE
Confidence 33455566777888875322222 234432 33334333333 3224799999974433 5777888999998
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
.+|.
T Consensus 103 MiDg 106 (347)
T PRK13399 103 MMDG 106 (347)
T ss_pred EEeC
Confidence 7764
No 499
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=40.26 E-value=3.1e+02 Score=25.52 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC------Cc----c-cHh
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING------NG----G-FLE 303 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG------~~----~-~l~ 303 (411)
.+.+.++...+.|++.|.+.-... .-.+++...+.....++++.+.+++. |+.+.+|..+ +. . .++
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~--Gv~l~lE~~n~~~~~~~~~~~~~~~~~ 163 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKE--DILLLIEPINHFDIPGFHLTGTRQALK 163 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CCEEEEEeCCCcCCCCCccCCHHHHHH
Confidence 334555666677999876542211 22456666677778999999999887 7888888632 11 1 123
Q ss_pred HHhcCCCcEE--EcC------CCCCHHHHHHHhCCCeeE
Q 015201 304 RMKGTGVDVI--GLD------WTVDMADGRKRLGNDISV 334 (411)
Q Consensus 304 ~~~e~g~d~l--~~d------~~~di~~~~~~~g~~~~l 334 (411)
.+.+.+-+.+ .+| ...|+.+..+.+++++..
T Consensus 164 ll~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~ri~~ 202 (258)
T PRK09997 164 LIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWADKIGH 202 (258)
T ss_pred HHHHhCCCCEEEEeEHHHhhhcCCcHHHHHHHhhCcccE
Confidence 3444443333 233 234677777777776543
No 500
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=40.17 E-value=2.6e+02 Score=25.43 Aligned_cols=122 Identities=9% Similarity=-0.056 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCC-CCCH---HHHHHHhCCCeeEEccCCcC--
Q 015201 269 QWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDW-TVDM---ADGRKRLGNDISVQGNVDPA-- 341 (411)
Q Consensus 269 ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~-~~di---~~~~~~~g~~~~l~G~vd~~-- 341 (411)
.|.....+.+-+.++++ |.-++++...+.. .++.+...++|++-+.. ..+. ..++ ..+-.+++.+...+.
T Consensus 12 ~~~~~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~-~~~ipvV~~~~~~~~~~ 88 (261)
T cd06272 12 VALTELVTGINQAISKN--GYNMNVSITPSLAEAEDLFKENRFDGVIIFGESASDVEYLYKI-KLAIPVVSYGVDYDLKY 88 (261)
T ss_pred hhHHHHHHHHHHHHHHc--CCEEEEEecccHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHH-HcCCCEEEEcccCCCCC
Confidence 45555666666777766 4445555555433 46778888899875422 1122 2222 345456677764331
Q ss_pred -cc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 342 -CL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 342 -~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
.+ ....+..+..++.+++.+.. .+.+- ++........++...+.++.+++|.
T Consensus 89 ~~V~~d~~~~~~~~~~~l~~~g~~-~i~~i-~~~~~~~~~~~R~~gf~~~~~~~~~ 142 (261)
T cd06272 89 PIVNVDNEKAMELAVLYLAEKGHK-KIAYI-GDLSLDRRQRKRFKGFLETCDENGI 142 (261)
T ss_pred CEEEEChHHHHHHHHHHHHHcCch-hEEEe-ecccccccHHHHHHHHHHHHHHcCC
Confidence 12 23455566667777765333 22221 2222223456788999999999874
Done!