BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015202
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 108/250 (43%), Gaps = 8/250 (3%)
Query: 10 IPEEINNLTNLIAIYLGG-NKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAAL 68
IP + NL L +Y+GG N L G I A + G+IP L ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 69 FQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPLTLWNL-KYILYLNLSSNSFT 126
LD N LSG +P +L NL + N+++ IP + + K + +S N T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 127 IPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIX 186
+P NL L +DLS N G G K+ Q + L N L + +G
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 187 XXXXXXXXXXXXGAIPISLEKLLDLQHINVSFNKLEGEIPREGPFRNFSIESFKGNELLC 246
G +P L +L L +NVSFN L GEIP+ G + F + ++ N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 247 GMPNLHVPPC 256
G P +P C
Sbjct: 306 GSP---LPAC 312
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 6 ISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXX-XXXXXXXXXEDNQLEGSIPYDLCR 64
+SG++P I++L NL+ I GN+++G+I + N+L G IP
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNS 124
L F +DL N L G FG+ N +K++L N L + + K + L+L +N
Sbjct: 197 LNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 125 FTIPLPSEIGNLEVLVQIDLSMNNFSGAIP 154
LP + L+ L +++S NN G IP
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Query: 5 NISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCR 64
N+SG+IP+ ++ + L+ + N L+G++ + + N++ G+IP
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 65 LAALF-QLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNL-KYILYLNLSS 122
+ LF + + N+L+G +P F NL NL + L N L L+ K ++L+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 123 NSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
NS L ++G + L +DL N G +P + LK L L + +N L G IP
Sbjct: 231 NSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 3 NCNISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDL 62
N +G IP ++N + L++++L N L+G+I + N LEG IP +L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 63 CRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPLTLWNLKYILYLNLS 121
+ L L L N L+G +PS N TNL + L +N+LT IP + L+ + L LS
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTI 157
+NSF+ +P+E+G+ L+ +DL+ N F+G IP +
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 115/311 (36%), Gaps = 72/311 (23%)
Query: 5 NISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCR 64
+++G IP ++N TNL I L N+L G I +N G+IP +L
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 65 LAALFQLDLGDNKLSGFVPS------------------------------CFGNLTNLRK 94
+L LDL N +G +P+ C G L
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 95 LYLGSNQLT-----------------YIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLE 137
+ S QL + T N +++L++S N + +P EIG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 138 VLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXX 197
L ++L N+ SG+IP +G L+ L L L N+L G IP
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------------------ 695
Query: 198 XGAIPISLEKLLDLQHINVSFNKLEGEIPREGPFRNFSIESFKGNELLCGMPNLHVPPCR 257
++ L L I++S N L G IP G F F F N LCG P P
Sbjct: 696 ------AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749
Query: 258 T-GIHHTSRKN 267
G H R +
Sbjct: 750 ADGYAHHQRSH 760
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 7 SGSIPEEINNLT-NLIAIYLGGNKLNGSI--SIAXXXXXXXXXXXXEDNQLEGSIPYDLC 63
SG +PE + NL+ +L+ + L N +G I ++ ++N G IP L
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 64 RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN--------QLTY----------- 104
+ L L L N LSG +PS G+L+ LR L L N +L Y
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 105 ------IPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIG 158
IP L N + +++LS+N T +P IG LE L + LS N+FSG IP +G
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 159 GLKDLQYLFLEYNRLQGSIP 178
+ L +L L N G+IP
Sbjct: 533 DCRSLIWLDLNTNLFNGTIP 552
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 51 DNQLEGSIPYDLCRLA-ALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPL- 107
+N+ G IP L L LDL N G VP FG+ + L L L SN + +P+
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 108 TLWNLKYILYLNLSSNSFTIPLPSEIGNLEV-LVQIDLSMNNFSGAI-PTTIGGLKD-LQ 164
TL ++ + L+LS N F+ LP + NL L+ +DLS NNFSG I P K+ LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 165 YLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXXGAIPISLEKLLDLQHINVSFNKLEGE 224
L+L+ N G IP + G IP SL L L+ + + N LEGE
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 225 IPRE 228
IP+E
Sbjct: 455 IPQE 458
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 20 LIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLGDNKLS 79
L + + GNK++G + ++ N IP+ L +AL LD+ NKLS
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDV--SSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 80 GFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEI-GNLEV 138
G T L+ L + SNQ P+ LK + YL+L+ N FT +P + G +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 139 LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXX 198
L +DLS N+F GA+P G L+ L L N G +P
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-------------------- 332
Query: 199 GAIPISLEKLLDLQHINVSFNKLEGEIPRE 228
+L K+ L+ +++SFN+ GE+P
Sbjct: 333 ---MDTLLKMRGLKVLDLSFNEFSGELPES 359
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
++ + GS+ C A+L LDL N LSG V + LT +L
Sbjct: 82 SNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTT-----------------LT----SL 119
Query: 110 WNLKYILYLNLSSNSFTIPLPSEIG-NLEVLVQIDLSMNNFSGAIPTTIG-----GLKDL 163
+ + +LN+SSN+ P G L L +DLS N+ SGA +G G +L
Sbjct: 120 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 177
Query: 164 QYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXXGAIPISLEKLLDLQHINVSFNKLEG 223
++L + N++ G + + + IP L LQH+++S NKL G
Sbjct: 178 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 224 EIPR 227
+ R
Sbjct: 235 DFSR 238
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 24 YLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP--YDLCRLAALFQLDLGDNKLSGF 81
+L + +NGS+S N L G + L + L L++ N L F
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-F 137
Query: 82 VPSCFG--NLTNLRKLYLGSNQLTYIPLTLWNLK----YILYLNLSSNSFTIPLP-SEIG 134
G L +L L L +N ++ + W L + +L +S N + + S
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 135 NLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXX 194
NLE L D+S NNFS IP +G LQ+L + N+L G I
Sbjct: 198 NLEFL---DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 195 XXXXGAIPISLEKLLDLQHINVSFNKLEGEIP 226
G IP L LQ+++++ NK GEIP
Sbjct: 254 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 283
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 3 NCNISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDL 62
N +G IP ++N + L++++L N L+G+I + N LEG IP +L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 63 CRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPLTLWNLKYILYLNLS 121
+ L L L N L+G +PS N TNL + L +N+LT IP + L+ + L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTI 157
+NSF+ +P+E+G+ L+ +DL+ N F+G IP +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 112/299 (37%), Gaps = 74/299 (24%)
Query: 5 NISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCR 64
+++G IP ++N TNL I L N+L G I +N G+IP +L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 65 LAALFQLDLGDNKLSGFVPS------------------------------CFGNLTNLRK 94
+L LDL N +G +P+ C G L
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 95 LYLGSNQLT-----------------YIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLE 137
+ S QL + T N +++L++S N + +P EIG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 138 VLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXX 197
L ++L N+ SG+IP +G L+ L L L N+L G IP + L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM----------- 705
Query: 198 XGAIPISLEKLLDLQHINVSFNKLEGEIPREGPFRNFSIESFKGNELLCGMPNLHVPPC 256
L I++S N L G IP G F F F N LCG P +P C
Sbjct: 706 -------------LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRC 748
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 7 SGSIPEEINNLT-NLIAIYLGGNKLNGSI--SIAXXXXXXXXXXXXEDNQLEGSIPYDLC 63
SG +PE + NL+ +L+ + L N +G I ++ ++N G IP L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 64 RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN--------QLTY----------- 104
+ L L L N LSG +PS G+L+ LR L L N +L Y
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 105 ------IPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIG 158
IP L N + +++LS+N T +P IG LE L + LS N+FSG IP +G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 159 GLKDLQYLFLEYNRLQGSIP 178
+ L +L L N G+IP
Sbjct: 536 DCRSLIWLDLNTNLFNGTIP 555
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 51 DNQLEGSIPYDLCRLA-ALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPL- 107
+N+ G IP L L LDL N G VP FG+ + L L L SN + +P+
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 108 TLWNLKYILYLNLSSNSFTIPLPSEIGNLEV-LVQIDLSMNNFSGAI-PTTIGGLKD-LQ 164
TL ++ + L+LS N F+ LP + NL L+ +DLS NNFSG I P K+ LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 165 YLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXXGAIPISLEKLLDLQHINVSFNKLEGE 224
L+L+ N G IP + G IP SL L L+ + + N LEGE
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 225 IPRE 228
IP+E
Sbjct: 458 IPQE 461
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 20 LIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLGDNKLS 79
L + + GNK++G + ++ N IP+ L +AL LD+ NKLS
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDV--SSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 80 GFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEI-GNLEV 138
G T L+ L + SNQ P+ LK + YL+L+ N FT +P + G +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 139 LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXX 198
L +DLS N+F GA+P G L+ L L N G +P
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-------------------- 335
Query: 199 GAIPISLEKLLDLQHINVSFNKLEGEIPRE 228
+L K+ L+ +++SFN+ GE+P
Sbjct: 336 ---MDTLLKMRGLKVLDLSFNEFSGELPES 362
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
++ + GS+ C A+L LDL N LSG V + LT +L
Sbjct: 85 SNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTT-----------------LT----SL 122
Query: 110 WNLKYILYLNLSSNSFTIPLPSEIG-NLEVLVQIDLSMNNFSGAIPTTIG-----GLKDL 163
+ + +LN+SSN+ P G L L +DLS N+ SGA +G G +L
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGEL 180
Query: 164 QYLFLEYNRLQGSIPDFIGGLIXXXXXXXXXXXXXGAIPISLEKLLDLQHINVSFNKLEG 223
++L + N++ G + + + IP L LQH+++S NKL G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 224 EIPR 227
+ R
Sbjct: 238 DFSR 241
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 24 YLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP--YDLCRLAALFQLDLGDNKLSGF 81
+L + +NGS+S N L G + L + L L++ N L F
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-F 140
Query: 82 VPSCFG--NLTNLRKLYLGSNQLTYIPLTLWNLK----YILYLNLSSNSFTIPLP-SEIG 134
G L +L L L +N ++ + W L + +L +S N + + S
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 135 NLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXXXXXXX 194
NLE L D+S NNFS IP +G LQ+L + N+L G I
Sbjct: 201 NLEFL---DVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 195 XXXXGAIPISLEKLLDLQHINVSFNKLEGEIP 226
G IP L LQ+++++ NK GEIP
Sbjct: 257 NQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 73 LGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPLPS 131
L DN+++ P F +L NL++LYLGSNQL +P+ +++ L + L+L +N T+ LPS
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPS 105
Query: 132 EI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+ L L ++ + N + +P I L L +L L+ N+L+ SIP
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 31/122 (25%)
Query: 11 PEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP---YDLCRLAA 67
P ++L NL +YLG N+L G++P +D L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-------------------------GALPVGVFD--SLTQ 89
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSF-T 126
L LDLG N+L+ + F L +L++L++ N+LT +P + L ++ +L L N +
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 127 IP 128
IP
Sbjct: 150 IP 151
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
DNQ+ P L L +L LG N+L F +LT L L LG+NQLT +P +
Sbjct: 48 HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107
Query: 110 WN-LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFL 168
++ L ++ L + N T LP I L L + L N L L + +L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 72 DLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWNLKYILYLNLSSNSFTIPLP 130
DL +K+ + S F + T+L +L L N++ I W L ++L LNLS N
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 131 SEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFI 181
NL+ L +DLS N+ + GL +L+ L L+ N+L+ S+PD I
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNS 124
A +LDL NKLS F LT LR LYL N+L +P ++ LK + L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 125 FTIPLPSEIGNLEVLV---QIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFI 181
LP IG + LV ++ L N P L L YL L YN LQ S+P +
Sbjct: 97 LQA-LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152
Query: 182 GGLIXXXXXXXXXXXXXGAIPI-SLEKLLDLQHINVSFNKLEGEIPREGPFRNFSIESFK 240
+ +P + +KL +L+ + + N+L+ +P EG F S+E K
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP-EGAFD--SLEKLK 208
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 17 LTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLGDN 76
L NL +++ NKL + NQL+ P L L L LG N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 77 KLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPLPSEIGN 135
+L F LT+L++L L +NQL +P ++ L + L L +N +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 136 LEVLVQIDLSMNNF 149
LE L + L N +
Sbjct: 204 LEKLKMLQLQENPW 217
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT-YIPLTL-WNLK--YILYLNLS 121
++L +LDL N L F P CF + L L L + QL ++ L W L I L+L+
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 122 SNSFTIPLPSEIGNLEV--LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
+N S L+ L Q+DLS NN + L L+YL LEYN +Q P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 180 FIGGL 184
GL
Sbjct: 291 SFYGL 295
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 52 NQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP-LTLW 110
NQL P + R + L LD G N +S P L L+ L L N+L+ I T
Sbjct: 35 NQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFV 94
Query: 111 NLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGA 152
+ L+L SNS + N + L+++DLS N S
Sbjct: 95 FCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTY-IPLTLWN---------LKYI 115
+ L L+L N +S F L LR L LG N++ + W L Y
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 116 LYLNLSSNSFT-IPL-----------------PSEIGNLEVLVQIDLSMNNFSGAIPTTI 157
YL LS++SF +P PS L L +DLS NN + +
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 158 GGLKDLQYLFLEYNRL 173
GL++L+ L ++N L
Sbjct: 501 EGLENLEILDFQHNNL 516
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFT 126
L +L+L +N +S P F NL NLR L L SN+L IPL ++ L + L++S N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 127 IPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
I L +L L +++ N+ GL L+ L LE L SIP
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP 168
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L+ L +LD+ +NK+ + F +L NL+ L +G N L YI ++ L + L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 124 SFTIPLPSE-IGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFL-EYNRLQGSIPDFI 181
+ T +P+E + +L L+ + L N + + L L+ L + + L P+ +
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
Query: 182 GGLIXXXXXXXXXXXXXGAIP-ISLEKLLDLQHINVSFN---KLEGEIPRE 228
GL A+P +++ L+ L+ +N+S+N +EG + E
Sbjct: 222 YGL--NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNL 112
QL PY L L L++ N+L+ S F ++ NL L L SN L LW
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342
Query: 113 KYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNR 172
+ LN + T P + E D+ + N+ I K Q E +
Sbjct: 343 RRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHT 402
Query: 173 LQ 174
+Q
Sbjct: 403 VQ 404
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 51 DNQLEGSIPYD--LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLT 108
DN+L G I D RL L +L+L N+L+G P+ F +++++L LG N++ I
Sbjct: 38 DNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 109 LW-NLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNF 149
++ L + LNL N + +P +L L ++L+ N F
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 91 NLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFS 150
++ +LYL NQ T +P L N K++ ++LS+N + N+ L+ + LS N
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 151 GAIPTTIGGLKDLQYLFLEYN 171
P T GLK L+ L L N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGN 112
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 115 ILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQ 174
+ L L N FT+ +P E+ N + L IDLS N S + + L L L YNRL+
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 175 GSIPDFIGGL 184
P GL
Sbjct: 92 CIPPRTFDGL 101
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 58 IPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYI-PLTLWNLKYIL 116
+P +L L +DL +N++S F N+T L L L N+L I P T LK +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 117 YLNLSSNSFTIPLPSEIGNLEVLVQIDLSMN 147
L+L N ++ +L L + + N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 291
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 125
Query: 110 WNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLE 169
NL + L LSSN TI S + L L Q+ S N + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSN--TISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 170 YNRL 173
N++
Sbjct: 182 SNKV 185
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L LF +NK+S S NLTN+ L G NQ++ + L NL I L L+
Sbjct: 326 LTKLQRLF---FSNNKVSDV--SSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 379
Query: 122 SNSFT-IPLPSEIGNLEVLVQIDLSMNNFSGAI--PTTIG 158
++T P+ N + V I ++ N +GA+ P TI
Sbjct: 380 DQAWTNAPV-----NYKANVSIPNTVKNVTGALIAPATIS 414
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 290
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 247 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 125
Query: 110 WNLKYILYLNLSSNSFT 126
NL + L LSSN+ +
Sbjct: 126 KNLTNLNRLELSSNTIS 142
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L LF +NK+S S NLTN+ L G NQ++ + L NL I L L+
Sbjct: 325 LTKLQRLF---FSNNKVSDV--SSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 378
Query: 122 SNSFT-IPLPSEIGNLEVLVQIDLSMNNFSGAI--PTTIG 158
++T P+ N + V I ++ N +GA+ P TI
Sbjct: 379 DQAWTNAPV-----NYKANVSIPNTVKNVTGALIAPATIS 413
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 71 LDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPL 129
LDL N L F LT+L +LYLG N+L +P ++N L + YLNLS+N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 130 PSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFI 181
P+ + L L ++ L+ N L L+ L L N+L+ S+PD +
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGV 143
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 9 SIPEEI-NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP---YDLCR 64
S+P + + LT+L +YLGGNKL + NQL+ S+P +D +
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFD--K 98
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L +L L N+L F LT L+ L L NQL +P +++ L + Y+ L N
Sbjct: 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Query: 124 SFTIPLP 130
+ P
Sbjct: 159 PWDCTCP 165
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 64 RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSS 122
L +L QL LG NKL F LT+L L L +NQL +P +++ L + L L++
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 123 NSFTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
N LP + L L + L N L LQY++L N + P
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 19/223 (8%)
Query: 19 NLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEG--SIPYDLCRLAALFQLDLGDN 76
NLI + L N L+ + +N+++ S D+ ++L +L+L N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 77 KLSGFVPSCFGNLTNLRKLYLGSNQL-----TYIPLTLWNLKYILYLNLSSNSFTIPLPS 131
++ F P CF + L L+L + QL + L L N I L+LS++ + +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNT 240
Query: 132 EIGNLEV--LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXX 189
L+ L +DLS NN + + L L+Y FLEYN +Q + GL
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 190 XXXXXXXXXGAIPI-SLEKLLD--------LQHINVSFNKLEG 223
+I + SL K+ D L+H+N+ N + G
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN-------------QLTYIPLTLWN 111
L L L++ DN + G + F L NL+ L L ++ L + PL + N
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIP-TTIGGLKDLQYLFLEY 170
L + S++F S +G+LEVL DL +N + GL+++ ++L Y
Sbjct: 388 LTKNKISKIESDAF-----SWLGHLEVL---DLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 171 NR 172
N+
Sbjct: 440 NK 441
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 294
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 295 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 342
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 250
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 251 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 75 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 129
Query: 110 WNLKYILYLNLSSNSFT 126
NL + L LSSN+ +
Sbjct: 130 KNLTNLNRLELSSNTIS 146
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L LF +NK+S S NLTN+ L G NQ++ + L NL I L L+
Sbjct: 329 LTKLQRLF---FANNKVSDV--SSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 382
Query: 122 SNSFT-IPLPSEIGNLEVLVQIDLSMNNFSGAI--PTTIG 158
++T P+ N + V I ++ N +GA+ P TI
Sbjct: 383 DQAWTNAPV-----NYKANVSIPNTVKNVTGALIAPATIS 417
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQL-----TYIPLTLWNLKYI 115
D+ ++L +L+L N++ F P CF + L L+L + QL + L L N I
Sbjct: 171 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-I 229
Query: 116 LYLNLSSNSFTIPLPSEIGNLEV--LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
L+LS++ + + L+ L +DLS NN + + L L+Y FLEYN +
Sbjct: 230 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Query: 174 QGSIPDFIGGLIXXXXXXXXXXXXXGAIPI-SLEKLLD--------LQHINVSFNKLEG 223
Q + GL +I + SL K+ D L+H+N+ N + G
Sbjct: 290 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN-------------QLTYIPLTLWN 111
L L L++ DN + G + F L NL+ L L ++ L + PL + N
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIP-TTIGGLKDLQYLFLEY 170
L + S++F S +G+LEVL DL +N + GL+++ ++L Y
Sbjct: 393 LTKNKISKIESDAF-----SWLGHLEVL---DLGLNEIGQELTGQEWRGLENIFEIYLSY 444
Query: 171 NR 172
N+
Sbjct: 445 NK 446
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 19/223 (8%)
Query: 19 NLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEG--SIPYDLCRLAALFQLDLGDN 76
NLI + L N L+ + +N+++ S D+ ++L +L+L N
Sbjct: 132 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 77 KLSGFVPSCFGNLTNLRKLYLGSNQL-----TYIPLTLWNLKYILYLNLSSNSFTIPLPS 131
++ F P CF + L L+L + QL + L L N I L+LS++ + +
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNT 250
Query: 132 EIGNLEV--LVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXXX 189
L+ L +DLS NN + + L L+Y FLEYN +Q + GL
Sbjct: 251 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 190 XXXXXXXXXGAIPI-SLEKLLD--------LQHINVSFNKLEG 223
+I + SL K+ D L+H+N+ N + G
Sbjct: 311 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN-------------QLTYIPLTLWN 111
L L L++ DN + G + F L NL+ L L ++ L + PL + N
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIP-TTIGGLKDLQYLFLEY 170
L + S++F S +G+LEVL DL +N + GL+++ ++L Y
Sbjct: 398 LTKNKISKIESDAF-----SWLGHLEVL---DLGLNEIGQELTGQEWRGLENIFEIYLSY 449
Query: 171 NR 172
N+
Sbjct: 450 NK 451
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 291
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 125
Query: 110 WNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLE 169
NL + L LSSN TI S + L L Q++ S N + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSN--TISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 170 YNRL 173
N++
Sbjct: 182 SNKV 185
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 291
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 247
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 125
Query: 110 WNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLE 169
NL + L LSSN TI S + L L Q+ S N + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSN--TISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 170 YNRL 173
N++
Sbjct: 182 SNKV 185
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNL 120
L L L L L N+L F LTNL++L L NQL +P +++ L + YLNL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 121 SSNSFTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
+ N LP + L L ++DLS N L L+ L L N+L+ S+PD
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Query: 180 FI 181
+
Sbjct: 199 GV 200
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 52 NQLEGSIPYDLC-RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW 110
NQL+ S+P + +L L +LDL N+L F LT L+ L L NQL +P ++
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 111 N-LKYILYLNLSSNSFTIPLP 130
+ L + Y+ L N + P
Sbjct: 202 DRLTSLQYIWLHDNPWDCTCP 222
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 14 INNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP---YDLCRLAALFQ 70
+ LTNL + L GN+L + +NQL+ S+P +D +L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD--KLTNLTY 137
Query: 71 LDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
L+L N+L F LTNL +L L NQL +P
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 290
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 291 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 246
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 247 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 125
Query: 110 WNLKYILYLNLSSNSFT 126
NL + L LSSN+ +
Sbjct: 126 KNLTNLNRLELSSNTIS 142
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L LDL +N++S P LT L +L LG+NQ++ I L L + L L+
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELN 295
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
N P I NL+ L + L NN S P + L LQ LF N++
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L +L L L +N++S P G LTNL +L L NQL I TL +L + L+L+
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N + P + L L ++ L N S P + GL L L L N+L+ P
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+NQL P L L L + + +N+++ P NLTNL L L +NQ+T I L
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-PL 130
Query: 110 WNLKYILYLNLSSNSFT 126
NL + L LSSN+ +
Sbjct: 131 KNLTNLNRLELSSNTIS 147
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP-LTLWNLKYILYLNLSSN 123
LAAL L L DN L F +L NL L+L N+++ +P L + L L N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 124 SFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPT-TIGGLKDLQYLFLEYN 171
P +L L+ + L NN S A+PT + L+ LQYL L N
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNS 124
AA ++ L N++S + F NL L+L SN L I + L + L+LS N+
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 125 FTIPL-PSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
+ P+ L L + L P GL LQYL+L+ N LQ ++PD
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 145
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP-LTLWNLKYILYLNLSSN 123
LAAL L L DN L F +L NL L+L N+++ +P L + L L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 124 SFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPT-TIGGLKDLQYLFLEYN 171
P +L L+ + L NN S A+PT + L+ LQYL L N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNS 124
AA ++ L N++S + F NL L+L SN L I + L + L+LS N+
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 125 FTIPL-PSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
+ P+ L L + L P GL LQYL+L+ N LQ ++PD
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNL 120
D L L L L +NK+S P F L L +LYL NQL +P + K + L +
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128
Query: 121 SSNSFTIPLPSEIGNLEVLVQIDLSMNNF--SGAIPTTIGGLKDLQYL 166
N T S L ++ ++L N SG G+K L Y+
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFT 126
L +L L N +S N +LR+L+L +N+L +P L + KYI + L +N+ +
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNL 120
D L L L L +NK+S P F L L +LYL NQL +P + K + L +
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128
Query: 121 SSNSFTIPLPSEIGNLEVLVQIDLSMNNF--SGAIPTTIGGLKDLQYL 166
N T S L ++ ++L N SG G+K L Y+
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFT 126
L +L L N +S N +LR+L+L +N+L +P L + KYI + L +N+ +
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
+ N+++ DL R + L++L LG N++ L LR+L+L +N+L+ +P L
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260
Query: 110 WNLKYILYLNLSSNSFT 126
+LK + + L +N+ T
Sbjct: 261 PDLKLLQVVYLHTNNIT 277
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNL 120
D L L+ L L +NK+S F L L+KLY+ N L IP L + ++ L +
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELRI 130
Query: 121 SSNSFTIPLPSEIGNLEVLVQIDLSMNNF--SGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
N L + I++ N SG P GLK L YL + +L G
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK 189
Query: 179 DF 180
D
Sbjct: 190 DL 191
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLS 121
L L L L +G NK++ S NLTNLR+LYL + ++ I L NL LNL
Sbjct: 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS-PLANLTKXYSLNLG 140
Query: 122 SNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+N L S + N L + ++ + P I L DL L L YN+++ P
Sbjct: 141 ANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 52 NQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN 111
NQ+ P + L L +G+NK++ P NL+ L L +G+NQ++ I + +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKD 263
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + LN+ SN I S + NL L + L+ N IGGL +L LFL N
Sbjct: 264 LTKLKXLNVGSNQ--ISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 172 RL 173
+
Sbjct: 322 HI 323
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 52 NQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN 111
NQ+E P L L +L N+++ P N T L L +G+N++T + L N
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLS-PLAN 241
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + +L + +N I + + +L L +++ N S + + L L LFL N
Sbjct: 242 LSQLTWLEIGTNQ--ISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297
Query: 172 RLQGSIPDFIGGL 184
+L + IGGL
Sbjct: 298 QLGNEDXEVIGGL 310
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 26/161 (16%)
Query: 15 NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLG 74
N L NL + L N+L + A +N +E Y R+ +L +LDLG
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Query: 75 D-NKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEI 133
+ +LS F L+NLR L L L IP NL ++ L+
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLD-------------- 210
Query: 134 GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQ 174
++DLS N+ S P + GL LQ L++ +++Q
Sbjct: 211 -------ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLN 119
+L L L +LDL N LS P F L +L+KL++ +Q+ I + NL+ ++ +N
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 120 LSSNSFTIPLPSEI 133
L+ N+ T+ LP ++
Sbjct: 262 LAHNNLTL-LPHDL 274
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 54 LEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-L 112
+ IP D RL L +N+++ P F +L NL++LY SN+LT IP +++ L
Sbjct: 27 VPAGIPTDKQRLW------LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 113 KYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNF 149
+ L+L+ N NL+ L I L N +
Sbjct: 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 3/165 (1%)
Query: 15 NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLG 74
N L +L + L N+L + A +N +E Y R+ +L +LDLG
Sbjct: 80 NGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 75 D-NKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEI 133
+ +L + F L NLR L LG L IP L L + L LS N + P
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSF 198
Query: 134 GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
L L ++ L + LK L+ L L +N L S+P
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLP 242
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLN 119
+L L L +L+L N+L P F LT+LRKL+L Q+ I + +LK + LN
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 120 LSSNSFTIPLPSEI 133
LS N+ + LP ++
Sbjct: 233 LSHNNL-MSLPHDL 245
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 51 DNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW 110
DNQ+ P RL L +LDL +N+L+ F LT L +L L NQL IP +
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Query: 111 -NLKYILYLNLSSNSF 125
NLK + ++ L +N +
Sbjct: 107 DNLKSLTHIWLLNNPW 122
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 73 LGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPLPS 131
L DN+++ P F LT L +L L +NQLT +P +++ L + L+L+ N
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 104
Query: 132 EIGNLEVLVQIDLSMNNFSGAI 153
NL+ L I L N + A
Sbjct: 105 AFDNLKSLTHIWLLNNPWDCAC 126
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 51 DNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW 110
DNQ+ P RL L +LDL +N+L+ F LT L +L L NQL IP +
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 111 -NLKYILYLNLSSNSF 125
NLK + ++ L +N +
Sbjct: 99 DNLKSLTHIWLLNNPW 114
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 73 LGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPLPS 131
L DN+++ P F LT L +L L +NQLT +P +++ L + L+L+ N
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 132 EIGNLEVLVQIDLSMNNFSGAI 153
NL+ L I L N + A
Sbjct: 97 AFDNLKSLTHIWLLNNPWDCAC 118
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L L+L N+L F +LT L L L +NQL +PL +++ L + L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 124 SFTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
LPS + L L ++ L+ N L +LQ L L N+LQ S+P
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L L L +N+L+ F +LT L KLYLG NQL +P +++ L + L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 124 SFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGS 176
L L + LS N L LQ + L N+ S
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 30/95 (31%)
Query: 15 NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP---YDLCRLAALFQL 71
++LT L +YLGGN+L S+P +D RL L +L
Sbjct: 104 DHLTQLDKLYLGGNQLK-------------------------SLPSGVFD--RLTKLKEL 136
Query: 72 DLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
L N+L F LTNL+ L L +NQL +P
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 3/165 (1%)
Query: 15 NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLG 74
N L +L + L N+L + A +N +E Y R+ +L +LDLG
Sbjct: 80 NGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 75 D-NKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEI 133
+ +L + F L NLR L LG L IP L L + L LS N + P
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSF 198
Query: 134 GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
L L ++ L + LK L+ L L +N L S+P
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLP 242
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 61 DLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLN 119
+L L L +L+L N+L P F LT+LRKL+L Q+ I + +LK + LN
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 120 LSSNSFTIPLPSEI 133
LS N+ + LP ++
Sbjct: 233 LSHNNL-MSLPHDL 245
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L L+L N+L F +LT L L L +NQL +PL +++ L + L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 124 SFTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
LPS + L L ++ L+ N L +LQ L L N+LQ S+P
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 30/95 (31%)
Query: 15 NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIP---YDLCRLAALFQL 71
++LT L +YLGGN+L S+P +D RL L +L
Sbjct: 104 DHLTQLDKLYLGGNQLK-------------------------SLPSGVFD--RLTKLKEL 136
Query: 72 DLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
L N+L F LTNL+ L L +NQL +P
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L L L +N+L+ F +LT L KLYLG NQL +P +++ L + L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 124 SFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGS 176
L L + LS N L LQ + L N+ S
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP-LTLWNLKYILYLNLSSN 123
LAAL L L DN L + F +L NL L+L N++ +P L + L L N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 124 SFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
P +L L+ + L NN S + L+ LQYL L N
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 71 LDLGDNKLSGFVPSCFGNLTNLRKLYLGSN-QLTYI-PLTLWNLKYILYLNLSSNSFTIP 128
L L N L+G + F LT L +L L N QL + P T L ++ L+L
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 129 LPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
P L L + L NN T L +L +LFL NR+ S+P+
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPE 169
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNL 120
L L L L L N+L F LTNL++L L NQL +P +++ L + YL L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 121 SSNSFTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPD 179
N LP + L L ++DL N L L+ L L N+L+ S+PD
Sbjct: 141 YHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPD 198
Query: 180 FI 181
+
Sbjct: 199 GV 200
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 9 SIPEEI-NNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLC-RLA 66
S+P+ + + LTNL +YL N+L ++NQL+ S+P + +L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLT 181
Query: 67 ALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN 100
L QL L DN+L F LT+L ++L +N
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 71 LDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLNLSSNSFTIPL 129
L+L D ++ F ++KLY+G N + Y+P ++ N+ + L L N + L
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 138
Query: 130 PSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXX 188
P I N L + +S NN T LQ L L NRL I L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198
Query: 189 XXXXXXXXXXGAIPISLEKLLDLQH--INV 216
AIPI++E+ LD H INV
Sbjct: 199 VSYNLLSTL--AIPIAVEE-LDASHNSINV 225
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 36/142 (25%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL------WNLKY------- 114
L L + +N L F T+L+ L L SN+LT++ L+L N+ Y
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208
Query: 115 ----ILYLNLSSNSFTI---PLPSEIGNLEV----------------LVQIDLSMNNFSG 151
+ L+ S NS + P+ E+ L++ LV++DLS N
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268
Query: 152 AIPTTIGGLKDLQYLFLEYNRL 173
+ ++ L+ L++ NRL
Sbjct: 269 IMYHPFVKMQRLERLYISNNRL 290
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 71 LDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLNLSSNSFTIPL 129
L+L D ++ F ++KLY+G N + Y+P ++ N+ + L L N + L
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132
Query: 130 PSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGLIXXX 188
P I N L + +S NN T LQ L L NRL I L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192
Query: 189 XXXXXXXXXXGAIPISLEKLLDLQH--INV 216
AIPI++E+ LD H INV
Sbjct: 193 VSYNLLSTL--AIPIAVEE-LDASHNSINV 219
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 36/142 (25%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL------WNLKYILY---- 117
L L + +N L F T+L+ L L SN+LT++ L+L N+ Y L
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202
Query: 118 -------LNLSSNSFTI---PLPSEIGNLEV----------------LVQIDLSMNNFSG 151
L+ S NS + P+ E+ L++ LV++DLS N
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262
Query: 152 AIPTTIGGLKDLQYLFLEYNRL 173
+ ++ L+ L++ NRL
Sbjct: 263 IMYHPFVKMQRLERLYISNNRL 284
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 88 NLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMN 147
+L+NL+ + +N Y LT LYLN NS T LP+EI NL L +DLS N
Sbjct: 230 DLSNLQIFNISANIFKYDFLTR------LYLN--GNSLT-ELPAEIKNLSNLRVLDLSHN 280
Query: 148 NFSGAIPTTIGGLKDLQYLFLEYNRLQGSIPDFIGGL 184
+ ++P +G L+Y + ++ + ++P G L
Sbjct: 281 RLT-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNL 315
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 68 LFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL---WNLKYILYLNLSSNS 124
L +L L N L+ +P+ NL+NLR L L N+LT +P L + LKY + ++
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF----DN 303
Query: 125 FTIPLPSEIGNL 136
LP E GNL
Sbjct: 304 MVTTLPWEFGNL 315
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 28/138 (20%)
Query: 3 NCNISGSIPEEINNLTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDL 62
N N +P EI NL+NL + L N+L S+P +L
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLT-------------------------SLPAEL 289
Query: 63 CRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYI--LYLNL 120
L DN ++ +P FGNL NL+ L + N L L + K + L L
Sbjct: 290 GSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348
Query: 121 SSNSFTIPLPSEIGNLEV 138
N IPLP E +E+
Sbjct: 349 RDNRPEIPLPHERRFIEI 366
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 57 SIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN 100
SIP + +L AL +L++ N+L F LT+L+K++L +N
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 17 LTNLIAIYLGGNKLNGSISIAXXXXXXXXXXXXEDNQLEGSIPYDLCRLAALFQLDLGDN 76
LTNL ++ L N LN S A N L + L AL L L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 77 KLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW----NLKYILYLNLSSNSF-TIPLPS 131
+ + F ++ L+KLYL NQ++ P+ L L ++ L+LSSN +PL +
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-T 181
Query: 132 EIGNLEVLVQIDLSMNN 148
++ L V+ L ++N
Sbjct: 182 DLQKLPAWVKNGLYLHN 198
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 51 DNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
DN++ P RL L +LDL +N+L+ F LT L +L L NQL IP
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 73 LGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNSFTIPLPS 131
L DN+++ P F LT L +L L +NQLT +P +++ L + L+L+ N
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 132 EIGNLEVLVQIDLSMNNFSGAI 153
NL L I L N + A
Sbjct: 97 AFDNLRSLTHIWLLNNPWDCAC 118
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 186
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 52 NQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN 100
N +EG Y L +L LDL DN LS S FG L++L+ L L N
Sbjct: 89 NTIEGDAFYSL---GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYI-PLT-LWNLKYILYLN 119
+ L ++ LDL +++ P L+NL+ LYL NQ+T I PL L NL+Y+ N
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 166
Query: 120 LSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
N T PL NL L + N S P + L +L + L+ N++ P
Sbjct: 167 NQVNDLT-PL----ANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP LT L+ LYL N ++
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 57 SIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN 100
SIP D+ L AL +L++ N+L F LT+L+ ++L N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 66 AALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSNS 124
++ +L+L NKL F LT L KL L NQ+ +P +++ L + L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 125 FTIPLPSEI-GNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
LP+ + L L ++ L N L LQ ++L N S P
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 64 RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
+L L L L +NKL F LT L++L L +NQL +P
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 50 EDNQLEGSIPYDL-CRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
E N+L+ S+P+ + +L L +L L N++ F LT L LYL N+L +P
Sbjct: 36 ESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 52 NQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSN 100
N +EG Y L +L LDL DN LS S FG L++L+ L L N
Sbjct: 63 NTIEGDAFYSL---GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 62 LCRLAALFQLDLGDNKLSGFVP-SCFGNLTNLRKLYLGSNQLT 103
L RL L L L DN++S VP +C LT L+ LYL N ++
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVPLAC---LTKLQNLYLSKNHIS 186
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKYILYLNLSSN 123
L L ++ G NKL FG + L++L L SNQL +P +++ L + + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 124 SFTIPLP 130
+ P
Sbjct: 229 PWDCSCP 235
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 84 SCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQID 143
+C N+ + R LT IP L + I + L N+ + P + L +ID
Sbjct: 10 TCSNNIVDCR-----GKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 144 LSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
LS N S P GL+ L L L N++
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
E N ++ P L ++DL +N++S P F L +L L L N++T +P +L
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 110 W 110
+
Sbjct: 100 F 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 84 SCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQID 143
+C N+ + R LT IP L + I + L N+ + P + L +ID
Sbjct: 10 TCSNNIVDCR-----GKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 144 LSMNNFSGAIPTTIGGLKDLQYLFLEYNRL 173
LS N S P GL+ L L L N++
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTL 109
E N ++ P L ++DL +N++S P F L +L L L N++T +P +L
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 110 W 110
+
Sbjct: 100 F 100
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 62 LCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYI-PLT-LWNLKYILYLN 119
+ L ++ LDL +++ P L+NL+ LYL NQ+T I PL L NL+Y+ N
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160
Query: 120 LSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQGSIP 178
+ T + NL L + N S P + L +L + L+ N++ P
Sbjct: 161 AQVSDLT-----PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 55 EGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIP 106
E +P L L LDL +L P+ F +L++L+ L + SNQL +P
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 308 LANQRRFTYLELFHATNGFSANNXXXXXXXXXXYKARIQDGMEVAVK 354
L +RF+ EL A++ FS N YK R+ DG VAVK
Sbjct: 22 LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVK 68
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 37/137 (27%)
Query: 70 QLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTY---IPLTLWNLKYILYLNLSSN--- 123
+LDLG C L NL+KL L + + L L NL+++ YLNLS N
Sbjct: 337 KLDLG--------TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 124 ------------------SFT---IPLP-SEIGNLEVLVQIDLSMNNFSGAIPTTIGGLK 161
+FT + P S NL +L ++LS + + GL+
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 162 DLQYLFLEYNRLQ-GSI 177
DL++L L+ N Q GSI
Sbjct: 449 DLRHLNLQGNSFQDGSI 465
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 64 RLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW-NLKYILYLNLSS 122
L L L+L N+L+ F LT L L L NQL IP+ ++ NLK + ++ L +
Sbjct: 62 SLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFN 121
Query: 123 NSF 125
N +
Sbjct: 122 NPW 124
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 50 EDNQLEGSIPYDLCRLAALFQLDLGD-NKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLT 108
+N +E Y R+ +L +LDLG+ KL F L NL+ L LG + +P
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213
Query: 109 LWNLKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFL 168
L L + L +S N F P L L ++ + + S GL L L L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 169 EYNRLQGSIP 178
+N L S+P
Sbjct: 274 AHNNL-SSLP 282
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 57 SIPYDLCR-LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKY 114
S+P R L L +L L N+L P L KL L +NQLT +P L N L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 115 ILYLNLSSNS-FTIP 128
+ L L NS +TIP
Sbjct: 174 LDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 57 SIPYDLCR-LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKY 114
S+P R L L +L L N+L P L KL L +NQLT +P L N L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 115 ILYLNLSSNS-FTIP 128
+ L L NS +TIP
Sbjct: 174 LDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWN 111
Q++G++P L LDL N+L +P L L L + N+LT +PL L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + L L N P + L ++ L+ NN + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 172 RLQGSIPDFIG 182
L F G
Sbjct: 183 SLYTIPKGFFG 193
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 57 SIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYIL 116
++P DL + + L L +N L F + T L +L L +LT + + L +
Sbjct: 24 ALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80
Query: 117 YLNLSSNSF-TIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQG 175
L+LS N ++PL + L L +D+S N + + GL +LQ L+L+ N L+
Sbjct: 81 TLDLSHNQLQSLPLLGQT--LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 176 SIPDFI 181
P +
Sbjct: 139 LPPGLL 144
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWN 111
Q++G++P L LDL N+L +P L L L + N+LT +PL L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + L L N P + L ++ L+ NN + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 172 RLQGSIPDFIG 182
L F G
Sbjct: 183 SLYTIPKGFFG 193
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 57 SIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYIL 116
++P DL + + L L +N L F + T L +L L +LT + + L +
Sbjct: 24 ALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80
Query: 117 YLNLSSNSF-TIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQG 175
L+LS N ++PL + L L +D+S N + + GL +LQ L+L+ N L+
Sbjct: 81 TLDLSHNQLQSLPLLGQT--LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 176 SIPDFI 181
P +
Sbjct: 139 LPPGLL 144
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 57 SIPYDLCR-LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKY 114
S+P R L L +L L N+L P L KL L +NQLT +P L N L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 115 ILYLNLSSNS-FTIP 128
+ L L NS +TIP
Sbjct: 174 LDTLLLQENSLYTIP 188
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 51 DNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW 110
D + ++P DL + + L L +N L F + T L +L L +LT + +
Sbjct: 18 DKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-G 74
Query: 111 NLKYILYLNLSSNSF-TIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLE 169
L + L+LS N ++PL + L L +D+S N + + GL +LQ L+L+
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 170 YNRLQGSIPDFI 181
N L+ P +
Sbjct: 133 GNELKTLPPGLL 144
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWN 111
Q++G++P L LDL N+L +P L L L + N+LT +PL L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + L L N P + L ++ L+ NN + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 172 RLQGSIPDFIG 182
L F G
Sbjct: 183 SLYTIPKGFFG 193
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 57 SIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWNLKYIL 116
++P DL + + L L +N L F + T L +L L +LT + + L +
Sbjct: 24 ALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80
Query: 117 YLNLSSNSF-TIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYNRLQG 175
L+LS N ++PL + L L +D+S N + + GL +LQ L+L+ N L+
Sbjct: 81 TLDLSHNQLQSLPLLGQT--LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 176 SIPDFI 181
P +
Sbjct: 139 LPPGLL 144
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWN 111
Q++G++P L LDL N+L +P L L L + N+LT +PL L
Sbjct: 72 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 123
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + L L N P + L ++ L+ NN + + GL++L L L+ N
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
Query: 172 RLQGSIPDFIG 182
L F G
Sbjct: 184 SLYTIPKGFFG 194
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 57 SIPYDLCR-LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLWN-LKY 114
S+P R L L +L L N+L P L KL L +NQLT +P L N L+
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 115 ILYLNLSSNS-FTIP 128
+ L L NS +TIP
Sbjct: 174 LDTLLLQENSLYTIP 188
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 51 DNQLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPLTLW 110
D + ++P DL + + L L +N L F + T L +L L +LT + +
Sbjct: 18 DKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-G 74
Query: 111 NLKYILYLNLSSNSF-TIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLE 169
L + L+LS N ++PL + L L +D+S N + + GL +LQ L+L+
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 170 YNRLQGSIPDFI 181
N L+ P +
Sbjct: 133 GNELKTLPPGLL 144
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 308 LANQRRFTYLELFHATNGFSANNXXXXXXXXXXYKARIQDGMEVAVK 354
L +RF+ EL A++ F N YK R+ DG VAVK
Sbjct: 14 LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 53 QLEGSIPYDLCRLAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYIPL-TLWN 111
Q++G++P L LDL N+L +P L L L + N+LT +PL L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 112 LKYILYLNLSSNSFTIPLPSEIGNLEVLVQIDLSMNNFSGAIPTTIGGLKDLQYLFLEYN 171
L + L L N P + L ++ L+ NN + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 172 RLQGSIPDFIG 182
L F G
Sbjct: 183 SLYTIPKGFFG 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 64 RLAALFQLDLGDNKLSGF-VPSCFGNLTNLRKLYLGSNQLTYIPLT 108
L L +L++ N + F +P F NLTNL L L SN++ I T
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYI-PLTLWNLKYILYLNLSSN 123
L L L L N + F P F LT+L L +L + + L + LN++ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 124 SF-TIPLPSEIGNLEVLVQIDLSMN 147
+ LP+ NL LV +DLS N
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 65 LAALFQLDLGDNKLSGFVPSCFGNLTNLRKLYLGSNQLTYI-PLTLWNLKYILYLNLSSN 123
L L L L N + F P F LT+L L +L + + L + LN++ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 124 SF-TIPLPSEIGNLEVLVQIDLSMN 147
+ LP+ NL LV +DLS N
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYN 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,791,538
Number of Sequences: 62578
Number of extensions: 408504
Number of successful extensions: 1218
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 325
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)