Query 015203
Match_columns 411
No_of_seqs 418 out of 1964
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 2.7E-54 9.3E-59 428.3 21.2 263 72-343 9-291 (325)
2 1ksk_A Ribosomal small subunit 100.0 1.4E-46 4.8E-51 356.5 16.5 206 78-319 2-209 (234)
3 2i82_A Ribosomal large subunit 100.0 2.2E-45 7.6E-50 344.7 20.5 193 142-343 12-206 (217)
4 1vio_A Ribosomal small subunit 100.0 3.2E-45 1.1E-49 349.2 16.2 202 80-317 3-206 (243)
5 1v9k_A Ribosomal large subunit 100.0 7.1E-44 2.4E-48 336.8 21.7 193 143-343 3-204 (228)
6 3dh3_A Ribosomal large subunit 100.0 4.2E-42 1.4E-46 334.9 17.7 206 77-319 4-209 (290)
7 2oml_A Ribosomal large subunit 100.0 2.6E-40 8.8E-45 303.9 7.3 167 142-320 4-173 (189)
8 2olw_A Ribosomal large subunit 100.0 2.1E-39 7.2E-44 304.1 9.5 167 141-320 31-201 (217)
9 2gml_A Ribosomal large subunit 100.0 2.1E-32 7.3E-37 258.5 10.3 142 148-317 13-154 (237)
10 2k6p_A Uncharacterized protein 98.6 4.2E-09 1.4E-13 84.8 -1.1 72 80-151 1-83 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.6 5.1E-08 1.7E-12 83.9 5.0 55 76-130 5-59 (133)
12 1p9k_A ORF, hypothetical prote 98.2 1.4E-07 4.7E-12 73.8 0.1 51 78-129 19-71 (79)
13 2vqe_D 30S ribosomal protein S 98.2 3.7E-07 1.3E-11 84.4 1.8 90 78-178 97-190 (209)
14 2cqj_A BRMS2, U3 small nucleol 98.1 2.1E-06 7.2E-11 65.7 3.6 50 79-129 7-60 (71)
15 1c05_A Ribosomal protein S4 de 98.0 9E-06 3.1E-10 71.9 6.1 79 79-166 50-129 (159)
16 3r8n_D 30S ribosomal protein S 97.6 6.4E-06 2.2E-10 75.6 -0.4 52 78-129 93-145 (205)
17 3j20_D 30S ribosomal protein S 97.6 2.5E-05 8.6E-10 70.2 2.9 50 79-129 102-155 (180)
18 3hp7_A Hemolysin, putative; st 97.6 5.6E-05 1.9E-09 73.2 5.4 51 79-129 6-59 (291)
19 3bbn_D Ribosomal protein S4; s 97.6 2.2E-05 7.6E-10 71.8 2.4 52 79-130 88-140 (201)
20 2xzm_D Ribosomal protein S4 co 97.4 4.7E-05 1.6E-09 68.6 2.6 47 79-126 106-154 (181)
21 3u5c_J 40S ribosomal protein S 97.0 0.00013 4.6E-09 66.2 0.9 49 79-128 106-158 (197)
22 1r3e_A TRNA pseudouridine synt 96.9 0.00095 3.2E-08 64.8 5.7 70 149-230 3-72 (309)
23 1k8w_A TRNA pseudouridine synt 96.9 0.001 3.6E-08 65.0 5.9 70 149-230 25-94 (327)
24 2aus_C Pseudouridine synthase; 96.8 0.0012 4E-08 65.1 5.7 73 146-230 43-115 (334)
25 1sgv_A TRNA pseudouridine synt 96.8 0.0012 4.2E-08 64.2 5.6 71 148-230 5-75 (316)
26 2apo_A Probable tRNA pseudouri 96.7 0.0014 4.9E-08 64.9 5.4 73 146-230 63-135 (357)
27 3u28_A H/ACA ribonucleoprotein 96.3 0.0037 1.3E-07 62.6 5.8 73 146-230 56-128 (400)
28 3iz6_C 40S ribosomal protein S 95.9 3.2E-05 1.1E-09 70.2 -10.4 52 78-130 107-160 (195)
29 3j20_E 30S ribosomal protein S 95.9 0.017 6E-07 53.9 7.5 53 77-129 40-94 (243)
30 3kbg_A 30S ribosomal protein S 95.7 0.017 5.7E-07 53.0 6.3 51 78-128 6-58 (213)
31 2xzm_W 40S ribosomal protein S 89.5 0.65 2.2E-05 43.6 6.7 53 77-129 39-95 (260)
32 3iz6_D 40S ribosomal protein S 88.7 0.35 1.2E-05 45.6 4.2 70 78-154 40-111 (265)
33 3u5c_E RP5, S7, YS6, 40S ribos 86.7 0.36 1.2E-05 45.4 3.1 52 78-129 40-93 (261)
34 1fm0_D Molybdopterin convertin 84.6 1.5 5E-05 33.1 5.2 50 78-129 24-75 (81)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 84.5 0.19 6.5E-06 50.8 0.0 47 79-126 352-400 (420)
36 2ktl_A Tyrosyl-tRNA synthetase 82.4 0.72 2.4E-05 40.5 2.8 35 79-114 49-84 (164)
37 1h3f_A Tyrosyl-tRNA synthetase 80.5 2.4 8.3E-05 42.8 6.4 45 79-124 368-414 (432)
38 1wv3_A Similar to DNA segregat 79.1 2.5 8.7E-05 39.1 5.6 41 103-154 133-174 (238)
39 2jan_A Tyrosyl-tRNA synthetase 76.4 1.5 5.2E-05 44.3 3.4 43 81-124 357-401 (432)
40 2q5w_D Molybdopterin convertin 74.1 3.3 0.00011 30.8 4.0 24 106-129 48-71 (77)
41 2hj1_A Hypothetical protein; s 73.9 0.4 1.4E-05 38.4 -1.3 50 78-129 34-83 (97)
42 3po0_A Small archaeal modifier 71.4 3 0.0001 32.0 3.3 24 106-129 60-83 (89)
43 2ts1_A Tyrosyl-tRNA synthetase 67.3 1.1 3.9E-05 45.1 0.0 46 79-125 351-398 (419)
44 3hvz_A Uncharacterized protein 64.3 4.8 0.00016 30.7 3.0 24 107-130 44-67 (78)
45 3fm8_A Kinesin-like protein KI 63.1 11 0.00038 31.2 5.3 24 105-128 90-113 (124)
46 1rws_A Hypothetical protein PF 63.1 2.4 8.3E-05 31.9 1.2 43 78-129 29-71 (77)
47 1ryj_A Unknown; beta/alpha pro 61.7 6.7 0.00023 28.8 3.4 43 78-129 22-64 (70)
48 2cu3_A Unknown function protei 60.5 6.4 0.00022 28.3 3.1 43 78-129 12-58 (64)
49 1vjk_A Molybdopterin convertin 60.2 4.8 0.00016 31.6 2.5 24 106-129 69-92 (98)
50 3rpf_C Molybdopterin convertin 55.5 6.9 0.00023 29.0 2.5 48 79-129 20-68 (74)
51 1tyg_B YJBS; alpha beta barrel 54.5 9.5 0.00033 29.6 3.3 41 80-129 37-81 (87)
52 3dwg_C 9.5 kDa culture filtrat 53.4 9.1 0.00031 29.5 3.1 24 106-129 60-87 (93)
53 2kmm_A Guanosine-3',5'-BIS(dip 52.5 9 0.00031 27.8 2.8 45 78-129 17-61 (73)
54 4egx_A Kinesin-like protein KI 52.0 11 0.00038 33.4 3.7 24 105-128 140-163 (184)
55 1f0z_A THis protein; ubiquitin 49.7 7.3 0.00025 28.2 1.8 43 78-129 14-60 (66)
56 2k9x_A Tburm1, uncharacterized 49.7 15 0.0005 29.8 3.8 46 80-129 38-96 (110)
57 2k5p_A THis protein, thiamine- 49.5 11 0.00038 28.5 2.9 43 78-129 16-63 (78)
58 4ejq_A Kinesin-like protein KI 46.5 14 0.00047 31.6 3.4 24 105-128 110-133 (154)
59 2g1e_A Hypothetical protein TA 42.4 12 0.00042 28.3 2.2 24 106-129 57-84 (90)
60 2l32_A Small archaeal modifier 40.7 8.2 0.00028 28.9 0.8 43 77-129 18-60 (74)
61 2kl0_A Putative thiamin biosyn 39.2 12 0.0004 27.9 1.5 43 78-129 13-59 (73)
62 1r21_A Antigen KI-67; beta san 36.5 19 0.00065 29.4 2.6 24 106-129 76-99 (128)
63 2l52_A Methanosarcina acetivor 35.6 14 0.00049 28.9 1.6 24 106-129 66-93 (99)
64 2qjl_A URM1, ubiquitin-related 35.5 26 0.0009 27.3 3.1 24 106-129 66-93 (99)
65 1wgk_A Riken cDNA 2900073H19 p 35.4 9.1 0.00031 31.2 0.4 47 80-129 46-102 (114)
66 1wln_A Afadin; beta sandwich, 34.6 25 0.00085 28.4 3.0 26 104-129 79-104 (120)
67 3uv0_A Mutator 2, isoform B; F 32.4 16 0.00053 29.3 1.3 23 103-126 60-82 (102)
68 1v8c_A MOAD related protein; r 32.3 27 0.00093 30.3 3.0 24 106-129 54-81 (168)
69 3gqs_A Adenylate cyclase-like 28.0 26 0.0009 27.5 2.0 24 106-129 70-93 (106)
70 3oug_A Aspartate 1-decarboxyla 26.3 42 0.0015 27.3 2.9 42 104-149 69-112 (114)
71 3hx1_A SLR1951 protein; P74513 24.1 40 0.0014 27.8 2.4 23 105-128 82-104 (131)
72 4h87_A Kanadaptin; FHA domain 24.0 57 0.0019 26.8 3.4 23 106-128 95-119 (130)
73 2jqj_A DNA damage response pro 23.8 50 0.0017 27.8 3.1 24 106-129 88-112 (151)
74 1wwt_A Threonyl-tRNA synthetas 21.5 41 0.0014 25.3 1.9 44 79-129 28-71 (88)
75 3po8_A RV0020C protein, putati 20.7 50 0.0017 25.5 2.3 23 106-129 66-88 (100)
76 1vc3_B L-aspartate-alpha-decar 20.6 27 0.00094 27.6 0.7 23 104-129 42-64 (96)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=2.7e-54 Score=428.34 Aligned_cols=263 Identities=21% Similarity=0.241 Sum_probs=163.7
Q ss_pred eecCCCcCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEE-ecCCceecCCCEEEEeeecCCCC-Cc--CCCceEeee
Q 015203 72 HVKNRWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEM-VPVSYTVKSSQKISHFLHRHEPP-VM--AWDVSILQK 147 (411)
Q Consensus 72 ~v~~~~~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~-v~~~~~v~~gD~I~~~~~~~e~~-~~--~~~~~IlyE 147 (411)
.+...+.++||++||++.+..+||+.++++|++|+|+|||++ +.++++|++||.|.+.....+++ .. ...+.|+||
T Consensus 9 ~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilye 88 (325)
T 1v9f_A 9 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYE 88 (325)
T ss_dssp -------------------------------------------------------------------CCCCCCCCCEEEE
T ss_pred EECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEE
Confidence 356678899999999998668999999999999999999998 58999999999999876543221 11 124679999
Q ss_pred CCcEEEEeCCCCceeecCCCCCCchHHHHHhhcc----CCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecE
Q 015203 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEH----DLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIK 223 (411)
Q Consensus 148 d~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~----~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K 223 (411)
|++|+|||||+||+||+++.....|+++.|.... ....+++|||||++||||||||+|+++++.|+++|+++.|.|
T Consensus 89 d~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K 168 (325)
T 1v9f_A 89 DEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITR 168 (325)
T ss_dssp CSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEE
T ss_pred CCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeE
Confidence 9999999999999999988877789988875321 224689999999999999999999999999999999999999
Q ss_pred EEEEEEecccCCCCceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHHHHH
Q 015203 224 RYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHL 303 (411)
Q Consensus 224 ~YlA~V~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIRvhl 303 (411)
+|+|+|.|.++. ++.|+.+|.++....... .+ ..+|+.|.|+|++++..++.|+|+|+|.||||||||+||
T Consensus 169 ~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~-~v-------~~~gk~a~t~~~vl~~~~~~slv~~~l~TGR~HQIRvhl 239 (325)
T 1v9f_A 169 EYEAVAIGHMTA-GGTVDEPISRHPTKRTHM-AV-------HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 239 (325)
T ss_dssp EEEEEEESCCCC-CEEEECCEEECSSCTTCE-EE-------CTTSBCCEEEEEEEEECSSEEEEEEEESCCCTTHHHHHH
T ss_pred EEEEEEeCCCCC-CCEEeeeeeECCCCCEEE-EE-------CCCCeeEEEEEEEeEEcCCeEEEEEEECCCCcHHHHHHH
Confidence 999999999987 789999998765443222 12 147899999999999888899999999999999999999
Q ss_pred hhcCCCeeecCCCCccccCC------------ccCccccceeeeeecCCCCC
Q 015203 304 QYTGYPIANDMLYLCEHVTH------------REGMSADRAAAYSHHSPPPV 343 (411)
Q Consensus 304 a~lG~PIvGD~~Yg~~~~~~------------~~~~~a~~~~~~~~~lp~~~ 343 (411)
+++||||+||.+||+..... .....+++++.+.|.+|...
T Consensus 240 a~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~~~ 291 (325)
T 1v9f_A 240 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 291 (325)
T ss_dssp HHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTC
T ss_pred HhCCCceeCChhhCCccccccccchhhhhhccCCcChhhheeeeEeeCCCCC
Confidence 99999999999999752100 12345677778889888664
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=1.4e-46 Score=356.49 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=170.7
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEec-CCceecCCCEEEEeeecCCCCCcCCCceEeee-CCcEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVP-VSYTVKSSQKISHFLHRHEPPVMAWDVSILQK-EPDVLTVC 155 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~-~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyE-d~~~ivvn 155 (411)
+++||++||++. +.+||+.++++|++|+|+|||+++. ++++|++||.|.+. ...|+|| |++|+|||
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~-----------~~~i~~e~d~~~lvvn 69 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD-----------GNPLAQQHGPRYFMLN 69 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET-----------TEEECCCCCCCEEEEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe-----------CeEeecCCCCEEEEEE
Confidence 478999999998 5899999999999999999999995 99999999999875 3468999 99999999
Q ss_pred CCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEEEEecccCC
Q 015203 156 KPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPE 235 (411)
Q Consensus 156 KP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~ 235 (411)
||+||+||+++.. .+||+++|..... ..+++|||||++||||||||+|++++++|.. +++.+.|+|+|+|.|.+++
T Consensus 70 KP~G~~~~~~~~~-~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~ 145 (234)
T 1ksk_A 70 KPQGYVCSTDDPD-HPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVTLESPVAD 145 (234)
T ss_dssp ECTTCBSSSSCSS-SCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCT
T ss_pred CCCCCEeCCCCCC-CCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCH
Confidence 9999999998875 7899998865432 3578999999999999999999999999985 7889999999999999887
Q ss_pred CCceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHHHHHhhcCCCeeecCC
Q 015203 236 GEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDML 315 (411)
Q Consensus 236 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIRvhla~lG~PIvGD~~ 315 (411)
+. ++.+. .+.. +.. ....+++|. |++++ .|+|+|+|.||||||||+||+++||||+||.+
T Consensus 146 ~~--i~~~~-----~g~~---~~~----~~~~~~~a~--~~~~~----~s~~~~~l~tGR~HQIR~h~~~lG~pi~gd~r 205 (234)
T 1ksk_A 146 DT--AEQFA-----KGVQ---LHN----EKDLTKPAV--LEVIT----PTQVRLTISEGRYHQVKRMFAAVGNHVVELHR 205 (234)
T ss_dssp TH--HHHHH-----HCCC---CTT----CSSCCCCCE--EEEEE----TTEEEEEESCCCTTHHHHHHHHTTCCEEEEEE
T ss_pred HH--HHHHH-----CCeE---ECC----CCcccceEE--EEEeC----CeEEEEEEccCCCHHHHHHHHHcCCeEeeeEE
Confidence 53 22211 1111 100 012345554 67774 68999999999999999999999999999999
Q ss_pred CCcc
Q 015203 316 YLCE 319 (411)
Q Consensus 316 Yg~~ 319 (411)
|+..
T Consensus 206 y~~g 209 (234)
T 1ksk_A 206 ERIG 209 (234)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9754
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=2.2e-45 Score=344.67 Aligned_cols=193 Identities=25% Similarity=0.333 Sum_probs=161.8
Q ss_pred ceEeeeCCcEEEEeCCCCceeecCCC-CCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCe
Q 015203 142 VSILQKEPDVLTVCKPPSVPVHPCGQ-YRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220 (411)
Q Consensus 142 ~~IlyEd~~~ivvnKP~Gl~v~~~~~-~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~ 220 (411)
+.|+|||++|+|||||+|++||++.. ...+||++.|.... ..+++|||||++||||||||+|++++++|+++|+++.
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~--~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~ 89 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVIVVALTKAAERELKRQFRERE 89 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC--TTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTC
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC--CCCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCC
Confidence 68999999999999999999998654 45679999987653 4578999999999999999999999999999999999
Q ss_pred ecEEEEEEEecccCCCCceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCC-eEEEEEEeccCcccHH
Q 015203 221 VIKRYIARVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGT-HSIVLCEPITGRTHQI 299 (411)
Q Consensus 221 v~K~YlA~V~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~-~slv~~~l~TGRtHQI 299 (411)
|+|+|+|+|.|.++.+++.|+.+|..+...+.... +. ..+|+.|.|+|++++..++ .|+|+|+|.|||||||
T Consensus 90 v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~-v~------~~~gk~a~t~~~vl~~~~~~~slv~~~l~TGR~HQI 162 (217)
T 2i82_A 90 PKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK-VC------YETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQL 162 (217)
T ss_dssp SEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEE-EC------TTTCBCCEEEEEEEEEETTTEEEEEEEESSCCTTHH
T ss_pred eeEEEEEEEecccCCCCcEEecceeecCCCCcEEE-Ee------CCCCcEEEEEEEEEEECCCCeEEEEEEECCCCcHHH
Confidence 99999999999999888899999986643332221 11 2478999999999998766 8999999999999999
Q ss_pred HHHHhhcCCCeeecCCCCccccCCccCccccceeeeeecCCCCC
Q 015203 300 RVHLQYTGYPIANDMLYLCEHVTHREGMSADRAAAYSHHSPPPV 343 (411)
Q Consensus 300 Rvhla~lG~PIvGD~~Yg~~~~~~~~~~~a~~~~~~~~~lp~~~ 343 (411)
|+||+++||||+||.+||+..........+++++.+.|.+|...
T Consensus 163 R~hla~lG~PIvGD~~Yg~~~~~~~~~r~~LHa~~l~f~hP~~~ 206 (217)
T 2i82_A 163 RVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYG 206 (217)
T ss_dssp HHHHHHTTCCBTTCTTTSCHHHHHTCSSCCEEEEEEEEECTTTC
T ss_pred HHHHHHCCCcEECccccCCccccCCCCCceeeeeEeEEcCCCCC
Confidence 99999999999999999975421112344566667888887764
No 4
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=3.2e-45 Score=349.17 Aligned_cols=202 Identities=16% Similarity=0.137 Sum_probs=165.9
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEeeecCCCCCcCCCceEeeeCCc-EEEEeCC
Q 015203 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPD-VLTVCKP 157 (411)
Q Consensus 80 ~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyEd~~-~ivvnKP 157 (411)
+||++||++. +.+||+.++++|++|+|+|||+++ +++++|++||.|.+. +..|+|||++ |+|||||
T Consensus 3 ~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~-----------~~~i~~ed~~~~lvvnKP 70 (243)
T 1vio_A 3 LRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE-----------DELLTWIEEGQYFMLNKP 70 (243)
T ss_dssp EEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET-----------TEECCSSCCCCEEEEEEC
T ss_pred ccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEe-----------ccccccCCCCEEEEEECC
Confidence 7999999998 589999999999999999999999 699999999988874 3569999999 9999999
Q ss_pred CCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEEEEecccCCCC
Q 015203 158 PSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEGE 237 (411)
Q Consensus 158 ~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~~~ 237 (411)
+||+||+++.. ..|++++|..... ..+++|||||++||||||||+|+++++++.. +++.|+|+|+|+|.|.++++.
T Consensus 71 ~G~~~~~~~~~-~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~~ 146 (243)
T 1vio_A 71 QGCVCSNDDGD-YPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITS--PKHHCEKTYLVTLADPVEENY 146 (243)
T ss_dssp TTCBSSCCC---CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH
T ss_pred CCCEeCCCCCC-CCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHHH
Confidence 99999998774 6799988875432 3578999999999999999999998888874 788999999999999988753
Q ss_pred ceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHHHHHhhcCCCeeecCCCC
Q 015203 238 QVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLYL 317 (411)
Q Consensus 238 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIRvhla~lG~PIvGD~~Yg 317 (411)
++.+. .+.. +.. ....+++|. +++++ .|+|+|+|.||||||||+||+++||||+||..|.
T Consensus 147 --i~~~~-----~g~~---~~~----~~~~~~~a~--~~~l~----~sl~~~~l~tGR~HQIR~hl~~lG~pI~gd~r~~ 206 (243)
T 1vio_A 147 --SAACA-----EGIL---LRG----EKEPTKPAK--LEILD----DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWK 206 (243)
T ss_dssp --HHHHH-----HCCC---CTT----CSSCCCCCE--EEECS----SSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred --HHHHh-----CCeE---ECC----CCccceeEE--EEEeC----CEEEEEEEccCCcHHHHHHHHHCCCeEcccEEEE
Confidence 22221 1111 100 012356665 56664 6899999999999999999999999999999553
No 5
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=7.1e-44 Score=336.83 Aligned_cols=193 Identities=31% Similarity=0.373 Sum_probs=160.7
Q ss_pred eEeeeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccC-CCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCee
Q 015203 143 SILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHD-LAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221 (411)
Q Consensus 143 ~IlyEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~-~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v 221 (411)
.|+|||++|+|||||+|++||++.. ..+++++.+..... ...+++|||||++||||||||+|+++++.|+++|+++.|
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v 81 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 81 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCe
Confidence 5899999999999999999998665 46788888865432 245789999999999999999999999999999999999
Q ss_pred cEEEEEEEecccCCCCceEeeeeecccC-CCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHH
Q 015203 222 IKRYIARVNGVFPEGEQVVDVNINYNAS-AGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIR 300 (411)
Q Consensus 222 ~K~YlA~V~G~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIR 300 (411)
.|+|+|+|.|.++++++.|+.+|.++.. .|...+.+ .++|+.|.|+|++++..++.|+|+|+|.||||||||
T Consensus 82 ~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~-------~~~gk~a~t~~~vl~~~~~~slv~~~l~TGR~HQIR 154 (228)
T 1v9k_A 82 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV-------SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 154 (228)
T ss_dssp EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEE-------CTTSBCCCEEEEEEEECSSEEEEEEEESSCCTTHHH
T ss_pred eEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEE-------CCCCcEEEEEEEEEEEcCCeEEEEEEECCCCchHHH
Confidence 9999999999999888999999876542 33333333 147899999999999888899999999999999999
Q ss_pred HHHhhcCCCeeecCCCCccccC-------CccCccccceeeeeecCCCCC
Q 015203 301 VHLQYTGYPIANDMLYLCEHVT-------HREGMSADRAAAYSHHSPPPV 343 (411)
Q Consensus 301 vhla~lG~PIvGD~~Yg~~~~~-------~~~~~~a~~~~~~~~~lp~~~ 343 (411)
+||+++||||+||.+||+.... ......+++++.+.|.+|...
T Consensus 155 ~hla~lG~PI~gD~~YG~~~~~~~~~~~~~~~~r~~LHa~~l~f~hP~t~ 204 (228)
T 1v9k_A 155 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 204 (228)
T ss_dssp HHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTC
T ss_pred HHHHHCCCcEecCcccCCccccchhhcccCCCCChhhccceeEeeCCCCC
Confidence 9999999999999999973210 112345666778888888664
No 6
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=4.2e-42 Score=334.95 Aligned_cols=206 Identities=16% Similarity=0.151 Sum_probs=167.9
Q ss_pred CcCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEeeecCCCCCcCCCceEeeeCCcEEEEeC
Q 015203 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCK 156 (411)
Q Consensus 77 ~~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyEd~~~ivvnK 156 (411)
..++||++||++. +.+||+.++++|++|+|+|||+++.+++.|.+||.|.++.....+ ..|||++|+||||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v~~~~~V~~gD~I~v~~~~i~~--------~~~ed~~~lvvnK 74 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEP--------REAEDLVLIALNK 74 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEECCTTCEECTTCCEEETTEEECC--------CCGGGCCEEEEEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEccCCcCcCCCCEEEeccccccc--------cccccceEEEEEC
Confidence 4689999999997 789999999999999999999999999999999999987432111 1379999999999
Q ss_pred CCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEEEEecccCCC
Q 015203 157 PPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIARVNGVFPEG 236 (411)
Q Consensus 157 P~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA~V~G~~~~~ 236 (411)
|+|++||+.+.. ..||+++|.. ...+++|||||++||||||||+|++++++|.. +.+.|.|+|+|+|.|.++++
T Consensus 75 P~G~~~~~~~~~-~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~ 148 (290)
T 3dh3_A 75 PVGIVSTTEDGE-RDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEE 148 (290)
T ss_dssp CTTCBCCCCSSC-TTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHH
T ss_pred CCccccCCCCCC-CCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHH
Confidence 999999998764 6799999865 35689999999999999999999999999995 57889999999999998865
Q ss_pred CceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHHHHHhhcCCCeeecCCC
Q 015203 237 EQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTGYPIANDMLY 316 (411)
Q Consensus 237 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIRvhla~lG~PIvGD~~Y 316 (411)
... ....|..+ .++....+.++.+ +.++|+|+|+|||+||||+||+++||||+++..|
T Consensus 149 ~i~-------~l~~Gv~l-----------~~~~~~~~~v~~~----~~~~l~l~l~tGR~HQIR~~~~~lG~pV~~L~R~ 206 (290)
T 3dh3_A 149 FIR-------GMSAGVPI-----------LGTVTKKCKVKKE----APFVFRITLVQGLNRQIRRMCEHFGYEVKKLERT 206 (290)
T ss_dssp HHH-------HHHTCCBC-----------SSSBCCCCEEEEC----SSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEE
T ss_pred HHH-------HHhcCccc-----------CCcccceEEEEEc----CCeEEEEEEeCCCChHHHHHHHHcCCeEEEeEEE
Confidence 321 11122211 1222223344433 4678999999999999999999999999999988
Q ss_pred Ccc
Q 015203 317 LCE 319 (411)
Q Consensus 317 g~~ 319 (411)
.-.
T Consensus 207 ~iG 209 (290)
T 3dh3_A 207 RIM 209 (290)
T ss_dssp EET
T ss_pred EEC
Confidence 643
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=2.6e-40 Score=303.88 Aligned_cols=167 Identities=18% Similarity=0.170 Sum_probs=128.1
Q ss_pred ceEeeeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCee
Q 015203 142 VSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKV 221 (411)
Q Consensus 142 ~~IlyEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v 221 (411)
..|+|||++|+|||||+||+||+++....+|+.++|. ...+++|||||++||||||||+|++++++|+++ ++.|
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~v 77 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKRT 77 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC----CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST--TSCC
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC----CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc--cCCC
Confidence 4699999999999999999999998877889988876 246899999999999999999999999999975 7899
Q ss_pred cEEEEEEEecccCCCC-ceEeeeeecccCC-CcceeeeCCCCCCCCCCCceeeeEEEEeeeC-CCeEEEEEEeccCcccH
Q 015203 222 IKRYIARVNGVFPEGE-QVVDVNINYNASA-GRSTAESGDSLGDTPLKGKAACTKFTRISTN-GTHSIVLCEPITGRTHQ 298 (411)
Q Consensus 222 ~K~YlA~V~G~~~~~~-~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~-~~~slv~~~l~TGRtHQ 298 (411)
+|+|+|+|.|.++++. ..++.++..+... ....+... ......+.|.|.+++.. .+.|+|+|+|.|||+||
T Consensus 78 ~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~------~~~~~~~~t~~~v~~~~~~~~slv~~~l~TGR~HQ 151 (189)
T 2oml_A 78 GKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV------DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 151 (189)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEE------CCCTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTH
T ss_pred cEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEe------cccccccccccccccccCCCcEEEEEEEeeCCCHH
Confidence 9999999999988654 2455555422110 00111110 01112346777777665 36899999999999999
Q ss_pred HHHHHhhcCCCeeecCCCCccc
Q 015203 299 IRVHLQYTGYPIANDMLYLCEH 320 (411)
Q Consensus 299 IRvhla~lG~PIvGD~~Yg~~~ 320 (411)
||+||+++||||+||.+||...
T Consensus 152 IRvhla~lG~PI~gD~~Y~~g~ 173 (189)
T 2oml_A 152 VRRMTAHVGFPTLRLIRYAMGD 173 (189)
T ss_dssp HHHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHHcCCcCcceEEEEECC
Confidence 9999999999999999998543
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=2.1e-39 Score=304.05 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=120.0
Q ss_pred CceEeeeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCe
Q 015203 141 DVSILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGK 220 (411)
Q Consensus 141 ~~~IlyEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~ 220 (411)
.+.|+|||++|+|||||+|++||+++.....||.++|.. ..+++|||||++||||||||+|+++++.|+++ .+.
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~~----~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~--~~~ 104 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQP--GKR 104 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCCC----CSCEESSCCCTTCEEEEEEESCHHHHHHHHCT--TCC
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhCc----CCceECCCCCCCCeeEEEEEcCHHHHHHHHcc--ccc
Confidence 467999999999999999999999888778899888862 46899999999999999999999999999975 688
Q ss_pred ecEEEEEEEecccCCCC-ceEeeeeeccc-CCCcceeeeCCCCCCCCCCCceeeeEEEEeee--CCCeEEEEEEeccCcc
Q 015203 221 VIKRYIARVNGVFPEGE-QVVDVNINYNA-SAGRSTAESGDSLGDTPLKGKAACTKFTRIST--NGTHSIVLCEPITGRT 296 (411)
Q Consensus 221 v~K~YlA~V~G~~~~~~-~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~--~~~~slv~~~l~TGRt 296 (411)
|+|+|+|+|.|.++++. ..++.++.... ......+.+.. ....+.+.+..+.. ..+.|+|+|+|+|||+
T Consensus 105 v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~slv~~~l~TGRt 177 (217)
T 2olw_A 105 TGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-------EPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 (217)
T ss_dssp CCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-------CCTTCCCCSSCCC-CCSSCEEEEEEEESCCCT
T ss_pred CCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEec-------CCccccccccceeccCCCCcEEEEEEECcCCC
Confidence 99999999999987654 24444443210 00000010000 00001111111111 1358999999999999
Q ss_pred cHHHHHHhhcCCCeeecCCCCccc
Q 015203 297 HQIRVHLQYTGYPIANDMLYLCEH 320 (411)
Q Consensus 297 HQIRvhla~lG~PIvGD~~Yg~~~ 320 (411)
||||+||+++||||+||.+||...
T Consensus 178 HQIRvhla~lG~PIvgD~rY~~g~ 201 (217)
T 2olw_A 178 RQVRRMTAHVGFPTLRLIRYAMGD 201 (217)
T ss_dssp THHHHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHHHHCCCcEeCCEEEEECC
Confidence 999999999999999999998543
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.97 E-value=2.1e-32 Score=258.46 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEE
Q 015203 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227 (411)
Q Consensus 148 d~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA 227 (411)
+++|||||||+|++||+.+. ...||+++|.. ..+++||||||++||||||||+|++++++|+. +++.|+|+|+|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~--p~~~v~K~Y~a 86 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLV 86 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HHHHSCEEEEE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhC--ccCCCCEEEEE
Confidence 45799999999999998766 56899999864 24689999999999999999999999999995 67889999999
Q ss_pred EEecccCCCCceEeeeeecccCCCcceeeeCCCCCCCCCCCceeeeEEEEeeeCCCeEEEEEEeccCcccHHHHHHhhcC
Q 015203 228 RVNGVFPEGEQVVDVNINYNASAGRSTAESGDSLGDTPLKGKAACTKFTRISTNGTHSIVLCEPITGRTHQIRVHLQYTG 307 (411)
Q Consensus 228 ~V~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~~~~slv~~~l~TGRtHQIRvhla~lG 307 (411)
+|.|.++++.+. ....|..+ .+++.+.+.++++. .++|+|+|.|||+||||+||+++|
T Consensus 87 ~V~G~~~~~~i~-------~l~~Gv~l-----------~~~~~~~a~~~~l~----~s~l~i~L~tGR~HQIRr~~a~lG 144 (237)
T 2gml_A 87 TVDKPITEEFIR-------GMSAGVPI-----------LGTVTKKCKVKKEA----PFVFRITLVQGLNRQIRRMCEHFG 144 (237)
T ss_dssp EESSCCCHHHHH-------HHSSCCEE-----------TTEECCCCEEEEEE----TTEEEEEECCCSTTHHHHHHHHTT
T ss_pred EEcccCCHHHHH-------HHHcCeEe-----------CCcccccEEEEEeC----CEEEEEEEecCCcHHHHHHHHHcC
Confidence 999998765321 01222211 23445556677763 578999999999999999999999
Q ss_pred CCeeecCCCC
Q 015203 308 YPIANDMLYL 317 (411)
Q Consensus 308 ~PIvGD~~Yg 317 (411)
|||+||..|.
T Consensus 145 ~pV~~L~R~~ 154 (237)
T 2gml_A 145 YEVKKLERTR 154 (237)
T ss_dssp CCEEEEEEEE
T ss_pred CCEeeeEEEE
Confidence 9999998864
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.58 E-value=4.2e-09 Score=84.78 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=54.5
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEeeecCCCC-----------CcCCCceEeeeC
Q 015203 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFLHRHEPP-----------VMAWDVSILQKE 148 (411)
Q Consensus 80 ~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~~~~e~~-----------~~~~~~~IlyEd 148 (411)
+||++||++.....||+.++++|++|.|+|||+++.+++.|++||.|.+.+...... .....+.++|||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed 80 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAP 80 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECCTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEcCCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHh
Confidence 589999998632348888999999999999999999999999999999865432111 112235678887
Q ss_pred CcE
Q 015203 149 PDV 151 (411)
Q Consensus 149 ~~~ 151 (411)
+++
T Consensus 81 ~~~ 83 (92)
T 2k6p_A 81 KTK 83 (92)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.55 E-value=5.1e-08 Score=83.95 Aligned_cols=55 Identities=5% Similarity=-0.060 Sum_probs=49.2
Q ss_pred CCcCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEee
Q 015203 76 RWAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHFL 130 (411)
Q Consensus 76 ~~~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~~ 130 (411)
...++||++||+......||+.++++|.+|.|+|||+++.+++.|+.||.|.+.+
T Consensus 5 ~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~vk~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 (133)
T ss_dssp CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCTTCBCCTTCEEEEEE
T ss_pred cccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEcCCCCEeCCCCEEEEEe
Confidence 3568999999998744579999999999999999999999999999999998864
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.24 E-value=1.4e-07 Score=73.77 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=46.3
Q ss_pred cCchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
+++||++||++. +.+ ||++++++|++|.|+|||+++ ++++.|.+||.|.+.
T Consensus 19 ~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 19 PHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp SCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred CCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC
Confidence 559999999998 665 999999999999999999998 889999999988875
No 13
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.19 E-value=3.7e-07 Score=84.38 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=64.8
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEeeecCCCCCcCCCceEeeeCCcEEEEe-
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVC- 155 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyEd~~~ivvn- 155 (411)
.++||+++|++.....||+.++++|.+|.|+|||+++ .+++.|++||.|.+....... . .-..++.+|
T Consensus 97 le~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~------~----~~~~~l~~~~ 166 (209)
T 2vqe_D 97 LESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNL------E----LIRQNLEAMK 166 (209)
T ss_dssp HHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTC------H----HHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccch------H----HHHHHHHhcC
Confidence 3689999999873356999999999999999999999 699999999999986332110 0 001223344
Q ss_pred --CCCCceeecCCCCCCchHHHHHh
Q 015203 156 --KPPSVPVHPCGQYRKNTVVGILQ 178 (411)
Q Consensus 156 --KP~Gl~v~~~~~~~~~tv~~~l~ 178 (411)
||+|.++...+. ...++.+++.
T Consensus 167 ~~kp~g~l~~d~~~-~~g~v~~lp~ 190 (209)
T 2vqe_D 167 GRKVGPWLSLDVEG-MKGKFLRLPD 190 (209)
T ss_dssp TCCCCTTCCEETTT-TEEECCSCCC
T ss_pred CCCCCCeEEEeccc-CeEEEEEcCC
Confidence 899998875544 3456655554
No 14
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2.1e-06 Score=65.72 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=44.5
Q ss_pred CchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecC--CCEEEEe
Q 015203 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKS--SQKISHF 129 (411)
Q Consensus 79 g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~--gD~I~~~ 129 (411)
.+||+++|.+. +.+ ||+.|+++|.+|.|+|||+++ .+++.|.+ +|.|.+.
T Consensus 7 ~~RLD~~l~~~-gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 7 GRRLPTVLLKL-RMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp EEEHHHHHHHT-TCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred HHHHHHHHHHh-CCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEE
Confidence 37999999998 666 999999999999999999999 79999998 7887753
No 15
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.96 E-value=9e-06 Score=71.92 Aligned_cols=79 Identities=20% Similarity=0.053 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEeeecCCCCCcCCCceEeeeCCcEEEEeCC
Q 015203 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTVCKP 157 (411)
Q Consensus 79 g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyEd~~~ivvnKP 157 (411)
++||+++|.+.....||+.++++|.+|.|+|||+++ .+++.|++||.|.+...... ...+. +.-.++ +||
T Consensus 50 e~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~------~~kl~-~al~~~--~~~ 120 (159)
T 1c05_A 50 ESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRN------LQVIK-EALEAN--NYI 120 (159)
T ss_dssp HHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSS------CHHHH-HHHHTC--CCC
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceeh------HHHHH-HHHHHh--CCC
Confidence 589999999873356999999999999999999999 79999999999998643211 11110 000012 899
Q ss_pred CCceeecCC
Q 015203 158 PSVPVHPCG 166 (411)
Q Consensus 158 ~Gl~v~~~~ 166 (411)
+|.+|...+
T Consensus 121 ~g~v~~d~~ 129 (159)
T 1c05_A 121 PDYLSFDPE 129 (159)
T ss_dssp CSSEEEETT
T ss_pred CCeEEEecC
Confidence 999887433
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.63 E-value=6.4e-06 Score=75.58 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=46.0
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
.++||+++|+......||+.++++|..|.|+|||+++ .+++.|++||.|.+.
T Consensus 93 le~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 93 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp HHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred hHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEec
Confidence 3679999999863356999999999999999999999 799999999999875
No 17
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.59 E-value=2.5e-05 Score=70.18 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=45.1
Q ss_pred CchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecCC--CEEEEe
Q 015203 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSS--QKISHF 129 (411)
Q Consensus 79 g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~g--D~I~~~ 129 (411)
.+||+++|... +.+ ||+.|+++|.+|.|+|||++| .+++.|.+| |.|.+.
T Consensus 102 e~RLD~~L~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~ 155 (180)
T 3j20_D 102 ERRLQTIVYKK-GLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYA 155 (180)
T ss_dssp HTSHHHHHHHH-TSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECS
T ss_pred hhhhhheeecC-cccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEe
Confidence 47999999887 666 999999999999999999999 799999999 888763
No 18
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.58 E-value=5.6e-05 Score=73.18 Aligned_cols=51 Identities=6% Similarity=-0.134 Sum_probs=45.6
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHHHcCcEEECC-E-Ee-cCCceecCCCEEEEe
Q 015203 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDE-E-MV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 79 g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNG-k-~v-~~~~~v~~gD~I~~~ 129 (411)
.+||+++|++.....||+.++++|++|+|+||| + ++ +++++|.+||.|.+.
T Consensus 6 ~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~ 59 (291)
T 3hp7_A 6 KERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLK 59 (291)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEET
T ss_pred hhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEc
Confidence 589999999984446999999999999999999 7 66 899999999999875
No 19
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.58 E-value=2.2e-05 Score=71.84 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=44.9
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEee
Q 015203 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFL 130 (411)
Q Consensus 79 g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~ 130 (411)
.+||+.+|.+.....||+.++++|..|.|+|||++| .+++.|++||.|.+..
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 468888888762235999999999999999999999 7999999999998863
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.44 E-value=4.7e-05 Score=68.63 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=42.7
Q ss_pred CchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecCCCEE
Q 015203 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKI 126 (411)
Q Consensus 79 g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I 126 (411)
.+||+.+|... +.+ ||+.|+++|.+|.|+|||++| .+++.|.++|.+
T Consensus 106 e~RLD~vL~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~ 154 (181)
T 2xzm_D 106 ERRLQTRVFKL-NLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEK 154 (181)
T ss_dssp TTBHHHHHHHT-TCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSS
T ss_pred ccchhHHHHhc-cccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCce
Confidence 58999999887 666 999999999999999999999 899999999843
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.03 E-value=0.00013 Score=66.20 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=42.8
Q ss_pred CchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecCCC--EEEE
Q 015203 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQ--KISH 128 (411)
Q Consensus 79 g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD--~I~~ 128 (411)
.+||+.+|... +.+ ||+.|+++|.+|.|+|||++| .+++.|.+|+ .|.+
T Consensus 106 e~RLD~~L~r~-G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~ 158 (197)
T 3u5c_J 106 ERRLQTQVYKL-GLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 158 (197)
T ss_dssp TTSHHHHHHHS-STTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBC
T ss_pred HHHHHHHHHHc-cccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEE
Confidence 47999999987 665 999999999999999999999 7999999995 4543
No 22
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.90 E-value=0.00095 Score=64.79 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=54.8
Q ss_pred CcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEEE
Q 015203 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228 (411)
Q Consensus 149 ~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA~ 228 (411)
+.+|+||||+|+.+| .++..++...+..++...|.||-..||||+++-... .++.+.+.+ ..|+|.|.
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~~--~~K~Y~a~ 70 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYKD--LKKVYWVK 70 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT--SCEEEEEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhccceecccccCCCCcceeEEEEECHH--HhHHHHhCc--cCcEEEEE
Confidence 468999999999876 567777776666778889999999999999998764 344444443 48999998
Q ss_pred Ee
Q 015203 229 VN 230 (411)
Q Consensus 229 V~ 230 (411)
+.
T Consensus 71 ~~ 72 (309)
T 1r3e_A 71 MR 72 (309)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.88 E-value=0.001 Score=65.00 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEEE
Q 015203 149 PDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIAR 228 (411)
Q Consensus 149 ~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA~ 228 (411)
+.+|+||||+|+.+| .++..++...+..++...|.||-..||||+++-... .+ +.+.+.+ ..|+|.|.
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~a-TK-l~~~l~~--~~K~Y~a~ 92 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA-TK-FSQYLLD--SDKRYRVI 92 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG-GG-GTHHHHT--SCEEEEEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHH-Hh-HHHHhcc--CCcEEEEE
Confidence 469999999999776 566777776666778889999999999999997654 22 3333432 37999998
Q ss_pred Ee
Q 015203 229 VN 230 (411)
Q Consensus 229 V~ 230 (411)
+.
T Consensus 93 ~~ 94 (327)
T 1k8w_A 93 AR 94 (327)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 24
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.82 E-value=0.0012 Score=65.08 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=56.6
Q ss_pred eeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEE
Q 015203 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (411)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~Y 225 (411)
|-.+.+|+||||+|+.+| .++..++...+..++...|-||-..||||+++-.. +. ++.+.+.+ ..|+|
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~-aT-k~~~~l~~--~~K~Y 110 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALER-AT-RVVQALLP--AGKEY 110 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGG-GG-GGGGGGTT--CCEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCcceeccccccCCccceeEEEEeCh-hh-hhHHHhcc--cCcEE
Confidence 445689999999999776 56777777666677889999999999999999864 33 44444443 58999
Q ss_pred EEEEe
Q 015203 226 IARVN 230 (411)
Q Consensus 226 lA~V~ 230 (411)
.|.+.
T Consensus 111 ~~~~~ 115 (334)
T 2aus_C 111 VALMH 115 (334)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99876
No 25
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.81 E-value=0.0012 Score=64.19 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEEEE
Q 015203 148 EPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRYIA 227 (411)
Q Consensus 148 d~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~YlA 227 (411)
.+.+|+||||+|+.+| .++..++...+..++...+.||-..||||+++-... .++.+.+. ...|+|.|
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K~Y~~ 72 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERA--TKILGLLT--AAPKSYAA 72 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTT--TSCEEEEE
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhccccccccccCCCCCeEEEEEEECHH--HhHHHHhC--cCCcEEEE
Confidence 4578999999999876 567777776666788899999999999999998754 33444443 35899999
Q ss_pred EEe
Q 015203 228 RVN 230 (411)
Q Consensus 228 ~V~ 230 (411)
.+.
T Consensus 73 ~~~ 75 (316)
T 1sgv_A 73 TIR 75 (316)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 26
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.71 E-value=0.0014 Score=64.91 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=57.0
Q ss_pred eeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEE
Q 015203 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (411)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~Y 225 (411)
|-.+.+|+||||+|+.+| .++..++...+..++.-.+-||-..||||+++-.. +. ++.+.+. ...|+|
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~-aT-k~~~~l~--~~~K~Y 130 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALER-AT-KTIPMWH--IPPKEY 130 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGG-GG-GGGGGTT--SSCEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCccccccccccCCCceeEEEEEeCH-HH-hHHHHhc--cCCcEE
Confidence 445689999999999876 56777777666677889999999999999999864 33 4444444 368999
Q ss_pred EEEEe
Q 015203 226 IARVN 230 (411)
Q Consensus 226 lA~V~ 230 (411)
.|.+.
T Consensus 131 ~~~~~ 135 (357)
T 2apo_A 131 VCLMH 135 (357)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99876
No 27
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.34 E-value=0.0037 Score=62.59 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=55.6
Q ss_pred eeCCcEEEEeCCCCceeecCCCCCCchHHHHHhhccCCCCcccccCCCCCCceEEEEEcChHHHHHHHHhhhcCeecEEE
Q 015203 146 QKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHDLAPLFPVHRLDRLVSGLLILARNASKADLFRQQIEAGKVIKRY 225 (411)
Q Consensus 146 yEd~~~ivvnKP~Gl~v~~~~~~~~~tv~~~l~~~~~~~~l~pVhRLDr~TSGLLL~Akd~~~a~~L~~~~~~~~v~K~Y 225 (411)
|-.+.+|+||||+|+.+| .++..++...+..++...|-||-..||||+++-... . ++.+.+.. -.|+|
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~a-T-Kl~~~l~~--~~K~Y 123 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRA-T-RLVKSQQG--AGKEY 123 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGG-G-GGHHHHHH--SCEEE
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChH-H-hHhHHhcC--CCcEE
Confidence 445789999999999876 567777776666788899999999999999997643 2 23332332 58999
Q ss_pred EEEEe
Q 015203 226 IARVN 230 (411)
Q Consensus 226 lA~V~ 230 (411)
.|.+.
T Consensus 124 ~a~~~ 128 (400)
T 3u28_A 124 VCIVR 128 (400)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 28
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.94 E-value=3.2e-05 Score=70.18 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=44.8
Q ss_pred cCchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEee
Q 015203 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFL 130 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~ 130 (411)
-.+||+.+|... +.+ ||+.|+++|..|.|+|||++| .+++.|.+||++.|.+
T Consensus 107 le~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~ 160 (195)
T 3iz6_C 107 LARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDF 160 (195)
T ss_dssp TTSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCS
T ss_pred HHhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEe
Confidence 347888888886 666 999999999999999999999 7999999999876543
No 29
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.88 E-value=0.017 Score=53.89 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=47.6
Q ss_pred CcCchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEe
Q 015203 77 WAGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 77 ~~g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
.+...|.=+|.+.++. .+++++++.+.+|.|+|||+++ .+.|.+..+|+|++.
T Consensus 40 ~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 40 RTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94 (243)
T ss_dssp TTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEET
T ss_pred ccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEec
Confidence 3468898999998775 6799999999999999999999 899999999999985
No 30
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=95.68 E-value=0.017 Score=52.97 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=44.7
Q ss_pred cCchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEE
Q 015203 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISH 128 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~ 128 (411)
+.+.|.=+|.+.++. .+++++++.+.+|.|+|||+++ .+.|.+..+|+|++
T Consensus 6 eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 6 QSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp SCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred hceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 457787788877654 6789999999999999999999 89999999999987
No 31
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=89.54 E-value=0.65 Score=43.63 Aligned_cols=53 Identities=9% Similarity=-0.032 Sum_probs=44.8
Q ss_pred CcCchHHHHHHHhcCC-CCHHHHHHHHHc--CcEEECCEEe-cCCceecCCCEEEEe
Q 015203 77 WAGKTIVDLFAEEFKG-RPYDYYVSAVKC--GRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 77 ~~g~rL~k~L~~~~~~-~Sr~~~~~~I~~--G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
.+.+.|.=+|.+.|+. .+.+++++.+.+ |.|.|||++. +..+.+---|+|++.
T Consensus 39 ~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~ 95 (260)
T 2xzm_W 39 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIE 95 (260)
T ss_dssp SSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEG
T ss_pred ceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEc
Confidence 3468888888888754 678999999999 9999999988 778999888999874
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.67 E-value=0.35 Score=45.59 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=49.8
Q ss_pred cCchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEeeecCCCCCcCCCceEeeeCCcEEEE
Q 015203 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~~~~~e~~~~~~~~~IlyEd~~~ivv 154 (411)
+.+.|.=+|.+.|+. .+.+++++.+.+|.|.|||++. +..+.+---|+|++.- ..+.++++|.....+++
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k-------t~e~fRll~D~kGrf~l 111 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPK-------TGENYRLLYDTKGRFRL 111 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCS-------SCCEEEEEECTTSCEEE
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcC-------CCCEEEEEECCCCcEEE
Confidence 457888888887665 4568899999999999999998 7788888889998741 12235566655544444
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=86.72 E-value=0.36 Score=45.37 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=44.7
Q ss_pred cCchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
+.+.|.=+|.+.|+. .+.+++++.+.+|.|.|||++. +..+.+---|+|++.
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~ 93 (261)
T 3u5c_E 40 ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLD 93 (261)
T ss_dssp GEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEET
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEc
Confidence 457888888888765 4678999999999999999998 788999999999875
No 34
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=84.64 E-value=1.5 Score=33.07 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=35.7
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcC--cEEECCEEecCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCG--RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G--~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
++.++.+++... .... ..+.+++..+ .|.|||+.+..++.|+.||+|.+.
T Consensus 24 ~~~tv~~ll~~L-~~~~-p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 24 DFPTVEALRQHM-AAQS-DRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp CCSBHHHHHHHH-HTTC-HHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCHHHHHHHH-HHHC-hhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 456777766654 2222 2456666555 488999999999999999999886
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=84.50 E-value=0.19 Score=50.80 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred CchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEE
Q 015203 79 GKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKI 126 (411)
Q Consensus 79 g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I 126 (411)
+..|.++|... +. -|+++++++|++|.|+|||+++ +.+..+.++|.+
T Consensus 352 ~i~l~~lL~~a-gl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIET-GISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHHHc-CCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 46788988876 54 4899999999999999999998 678888877654
No 36
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=82.44 E-value=0.72 Score=40.48 Aligned_cols=35 Identities=9% Similarity=-0.128 Sum_probs=30.8
Q ss_pred CchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEe
Q 015203 79 GKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMV 114 (411)
Q Consensus 79 g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v 114 (411)
|..|.++|... +.+ |+++++++|.+|-|+|||+++
T Consensus 49 g~~ivdlLv~a-GLa~SKsEARRlI~qGGv~VNg~kv 84 (164)
T 2ktl_A 49 DKTFSKVLWSA-GLVASKSEGQRIINNNGAYVGSRPG 84 (164)
T ss_dssp SCSHHHHHHHH-TSCSTHHHHHHHHHHTCEEEEECCS
T ss_pred CCcHHHHHHHh-CcccCHHHHHHHHHhCCEEECCEec
Confidence 56799999887 554 999999999999999999876
No 37
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=80.54 E-value=2.4 Score=42.79 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=38.4
Q ss_pred CchHHHHHHHhcC-CCCHHHHHHHHHcCcEEECCEEe-cCCceecCCC
Q 015203 79 GKTIVDLFAEEFK-GRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQ 124 (411)
Q Consensus 79 g~rL~k~L~~~~~-~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD 124 (411)
+..|.++|... + .-|+++++++|++|-|+|||+++ ++++.+..++
T Consensus 368 ~~~~~~~l~~~-~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLA-GLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHh-CCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56799999876 4 46999999999999999999998 7788887665
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=79.14 E-value=2.5 Score=39.07 Aligned_cols=41 Identities=7% Similarity=-0.018 Sum_probs=35.0
Q ss_pred HcCcEEECCEEecCCceec-CCCEEEEeeecCCCCCcCCCceEeeeCCcEEEE
Q 015203 103 KCGRIQVDEEMVPVSYTVK-SSQKISHFLHRHEPPVMAWDVSILQKEPDVLTV 154 (411)
Q Consensus 103 ~~G~V~VNGk~v~~~~~v~-~gD~I~~~~~~~e~~~~~~~~~IlyEd~~~ivv 154 (411)
.+|.|.|||+.++....++ .||.|.+. ++.+.+..+++.++
T Consensus 133 ~ngtvyvNg~~i~~~~~L~~~GD~I~ig-----------~~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQEQLTNKAYIGDHIYVE-----------GIWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECCSSEEEEETTCEEEET-----------TEEEEECSSEEEEE
T ss_pred CCCCEEECCEEeccceeccCCcCEEEEC-----------CEEEEEECCEEEEE
Confidence 4788999999998888999 99999986 67788888887774
No 39
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=76.38 E-value=1.5 Score=44.32 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCC
Q 015203 81 TIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQ 124 (411)
Q Consensus 81 rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD 124 (411)
.|.++|... +. -|+++++++|++|.|+|||++| +.++.+..+|
T Consensus 357 ~~~~ll~~~-gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVAS-GLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHH-TSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHh-CCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 799999877 54 5999999999999999999988 6777776543
No 40
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.11 E-value=3.3 Score=30.79 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=22.1
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+..++.|+.||+|.+.
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEECTTSEECTTCEEEEE
T ss_pred EEEECCEECCCCCCcCCCCEEEEE
Confidence 589999999889999999999986
No 41
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=73.94 E-value=0.4 Score=38.44 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=35.8
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
+|.++.+.|... +.. ...-+--+....|-|||+.+..++.|+.||+|.++
T Consensus 34 ~g~TV~daI~~~-gi~-~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 34 EGITVQTAITQS-GIL-SQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp TTCBHHHHHHHH-THH-HHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred CCCcHHHHHHHc-CCC-ccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 578999988886 321 11000011245799999999999999999999987
No 42
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=71.42 E-value=3 Score=32.02 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=22.4
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+..++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 60 NVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEEECCEECCCCcccCCCCEEEEE
Confidence 689999999999999999999987
No 43
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=67.30 E-value=1.1 Score=45.08 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CchHHHHHHHhcCC-CCHHHHHHHHHcCcEEECCEEe-cCCceecCCCE
Q 015203 79 GKTIVDLFAEEFKG-RPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQK 125 (411)
Q Consensus 79 g~rL~k~L~~~~~~-~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~ 125 (411)
+..|.++|... +. -|+++++++|++|.|+|||++| +.++.+..+|.
T Consensus 351 ~~~~~~~l~~~-gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 351 DVPLVELLVSA-GISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHh-CCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 46788888876 44 4899999999999999999988 67777766554
No 44
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=64.29 E-value=4.8 Score=30.67 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.5
Q ss_pred EEECCEEecCCceecCCCEEEEee
Q 015203 107 IQVDEEMVPVSYTVKSSQKISHFL 130 (411)
Q Consensus 107 V~VNGk~v~~~~~v~~gD~I~~~~ 130 (411)
.+|||+.+..++.|+.||.|++..
T Consensus 44 AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEECTTCBCCTTCBEEEEE
T ss_pred EEECCEEcCCCcccCCCCEEEEEc
Confidence 578999999999999999998753
No 45
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=63.12 E-value=11 Score=31.17 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.0
Q ss_pred CcEEECCEEecCCceecCCCEEEE
Q 015203 105 GRIQVDEEMVPVSYTVKSSQKISH 128 (411)
Q Consensus 105 G~V~VNGk~v~~~~~v~~gD~I~~ 128 (411)
..++|||++|.....|+.||+|.+
T Consensus 90 ngt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECCSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCcEECCCCCEEEE
Confidence 358999999987789999999986
No 46
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=63.07 E-value=2.4 Score=31.93 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
++.++.++|... + .+. ..=.|.|||+.+..++.|+.||+|.+.
T Consensus 29 ~~~Tv~dLl~~L-~-~~~-------~~v~VavNg~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FNT-------ESAIAKVNGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp SSCCHHHHHHTT-T-CSS-------CSSCEEETTEEECSSSCCCSSCCCBCS
T ss_pred CCCcHHHHHHHh-C-CCC-------cCEEEEECCEECCCCCCcCCCCEEEEE
Confidence 357888888764 3 221 112589999999889999999999875
No 47
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=61.75 E-value=6.7 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=31.9
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.+.++.++|... +. +. ..=.|.|||+.+..+..|+.||+|.+.
T Consensus 22 ~~~tv~~Ll~~l-~~-~~-------~~v~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 22 APRRIKDVLGEL-EI-PI-------ETVVVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp SCCBHHHHHHHT-TC-CT-------TTEEEEETTEECCTTSBCCTTCEEEEE
T ss_pred CCCcHHHHHHHh-CC-CC-------CCEEEEECCEECCCcccCCCCCEEEEE
Confidence 357898888874 32 21 111378999999888899999999986
No 48
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=60.50 E-value=6.4 Score=28.32 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=31.1
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCC----ceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVS----YTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~----~~v~~gD~I~~~ 129 (411)
++.++.++|... + .++ ..=.|.|||+.+..+ +.|+.||+|.+.
T Consensus 12 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 12 EGKTLKEVLEEM-G-VEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTCCHHHHHHHH-T-BCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 467888888775 3 221 111488999999644 899999999986
No 49
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=60.18 E-value=4.8 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=22.0
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+..++.|+.||+|.+.
T Consensus 69 ~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 69 NIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCEECCCCCCCCCCCEEEEE
Confidence 489999999889999999999986
No 50
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=55.47 E-value=6.9 Score=28.98 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=32.4
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEe-cCCceecCCCEEEEe
Q 015203 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMV-PVSYTVKSSQKISHF 129 (411)
Q Consensus 79 g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v-~~~~~v~~gD~I~~~ 129 (411)
+.++.+++... ...+ .+.+.+..-.|.|||+.+ ..++.|+.||+|.+.
T Consensus 20 ~~tv~~ll~~L-~~~~--~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 20 ANDLKELRAIL-QEKE--GLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CSSHHHHHHHH-HTCT--TTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred CCcHHHHHHHH-HHCc--CHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 56666665543 1111 122334566789999995 788999999999986
No 51
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=54.51 E-value=9.5 Score=29.60 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.9
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecC----CceecCCCEEEEe
Q 015203 80 KTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (411)
Q Consensus 80 ~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (411)
.+|.++|... + .+. ..=.|.|||+.+.. ++.|+.||+|.+.
T Consensus 37 ~Tv~dLL~~L-~-~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 37 GTIQDLLASY-Q-LEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp CBHHHHHHHT-T-CTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcHHHHHHHh-C-CCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 7898988874 3 221 11137899999954 5789999999986
No 52
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=53.41 E-value=9.1 Score=29.49 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.1
Q ss_pred cEEECCEEec----CCceecCCCEEEEe
Q 015203 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 5789999996 58999999999986
No 53
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.53 E-value=9 Score=27.83 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=30.2
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.|.++.+++... . .....+.+ .+.|||+.+..++.|..||.|.+.
T Consensus 17 ~g~T~~dla~~i-~---~~l~~~~v---aa~vNg~lvdl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 17 QGATALDFAYSL-H---SDLGDHCI---GAKVNHKLVPLSYVLNSGDQVEVL 61 (73)
T ss_dssp TTCBHHHHHHHH-C---SHHHHTEE---EEEETTEECCTTCBCCSSSBEEEE
T ss_pred CCCcHHHHHHHH-h---hccccceE---EEEECCEEeCCCcCcCCCCEEEEE
Confidence 367888866553 1 11111111 247899999999999999998864
No 54
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=51.96 E-value=11 Score=33.37 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred CcEEECCEEecCCceecCCCEEEE
Q 015203 105 GRIQVDEEMVPVSYTVKSSQKISH 128 (411)
Q Consensus 105 G~V~VNGk~v~~~~~v~~gD~I~~ 128 (411)
..++|||+.|.....|+.||+|.+
T Consensus 140 a~t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECCSCEECCTTCEEEE
T ss_pred CeEEEcCEEccccEEcCCCCEEEE
Confidence 469999999987899999999875
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=49.74 E-value=7.3 Score=28.18 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=30.7
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecC----CceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (411)
++.++.++|... +. ++ ..=.|.|||+.+.. ++.|+.||+|.+.
T Consensus 14 ~~~tv~~ll~~l-~~-~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 14 AGQTVHELLEQL-DQ-RQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp TTCCHHHHHHHH-TC-CC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred CCCcHHHHHHHc-CC-CC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 467888888775 32 21 01137899999964 6899999999876
No 56
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=49.71 E-value=15 Score=29.82 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=31.2
Q ss_pred chHHHHHHHhcCCCCHHHHHHHH-HcC--c------EEECCEEec----CCceecCCCEEEEe
Q 015203 80 KTIVDLFAEEFKGRPYDYYVSAV-KCG--R------IQVDEEMVP----VSYTVKSSQKISHF 129 (411)
Q Consensus 80 ~rL~k~L~~~~~~~Sr~~~~~~I-~~G--~------V~VNGk~v~----~~~~v~~gD~I~~~ 129 (411)
..|.++|++.++...+ +++ ..| . |.|||+.++ .++.|+.||+|.+.
T Consensus 38 ~dLl~~L~~~~~~~r~----~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 38 NGLVQLLKTNYVKERP----DLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HHHHHHHTTTTCCSCH----HHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred HHHHHHHHHHccccch----hhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 3466777777654433 233 334 2 789998873 57999999998875
No 57
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=49.48 E-value=11 Score=28.49 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=31.7
Q ss_pred cCchHHHHHHHhcCCC-CHHHHHHHHHcCcEEECCEEecCC----ceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGR-PYDYYVSAVKCGRIQVDEEMVPVS----YTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~-Sr~~~~~~I~~G~V~VNGk~v~~~----~~v~~gD~I~~~ 129 (411)
++.+|.++|... +.- ++ .+ .|.|||+.|..+ +.|+.||.|.+.
T Consensus 16 ~~~Tl~~LL~~l-~~~~~~-----~v---AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 16 ESLNVTELLSAL-KVAQAE-----YV---TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp SCEEHHHHHHHH-TCSCTT-----TC---CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred CCCcHHHHHHHc-CCCCCC-----cE---EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 358999998875 432 11 11 489999999654 789999999986
No 58
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=46.53 E-value=14 Score=31.61 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.8
Q ss_pred CcEEECCEEecCCceecCCCEEEE
Q 015203 105 GRIQVDEEMVPVSYTVKSSQKISH 128 (411)
Q Consensus 105 G~V~VNGk~v~~~~~v~~gD~I~~ 128 (411)
..++|||++|.....|+.||+|.+
T Consensus 110 ngt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 110 ADTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CCEEETTEECCSCEECCTTCEEEE
T ss_pred CceEECCEEcCCceECCCCCEEEE
Confidence 358999999977788999999986
No 59
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=42.43 E-value=12 Score=28.31 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEECCEEec----CCceecCCCEEEEe
Q 015203 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+. .++.|+.||+|.+.
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 5889999985 68899999999886
No 60
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=40.74 E-value=8.2 Score=28.93 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.8
Q ss_pred CcCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 77 WAGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 77 ~~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
.+|.++.++|... +.-+.. - .|.+||+.+..+..+. ||.|.+.
T Consensus 18 ~~g~Tv~dLL~~L-gl~~~~-------V-vV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 18 DDDGTYADLVRAV-DLSPHE-------V-TVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp STTCSHHHHHHTT-CCCSSC-------C-CEECCCCCCCTTSSSC-CCCEEEC
T ss_pred CCCCcHHHHHHHc-CCCcce-------E-EEEECCEECCHHHCCC-CCEEEEE
Confidence 3578999988884 433321 1 4899999998888776 9999874
No 61
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=39.23 E-value=12 Score=27.93 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=31.6
Q ss_pred cCchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecC----CceecCCCEEEEe
Q 015203 78 AGKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPV----SYTVKSSQKISHF 129 (411)
Q Consensus 78 ~g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (411)
++.+|.++|... +.-++ .+ .|.|||+.+.. .+.|+.||.|.+.
T Consensus 13 ~~~Tl~~LL~~l-~~~~~-----~v---AV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 13 QSASVAALMTEL-DCTGG-----HF---AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CCSBHHHHHHHT-TCCSS-----SC---EEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHHc-CCCCC-----cE---EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 468999988874 43321 11 47899999853 5799999999986
No 62
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=36.47 E-value=19 Score=29.43 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=19.1
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
-++|||+.+.....|+.||.|.+-
T Consensus 76 Gt~vNg~~i~~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 76 PTQVNGSVIDEPVRLKHGDVITII 99 (128)
T ss_dssp CCEETTEECSSCEECCTTEEEECS
T ss_pred CEEECCEECCCcEEcCCCCEEEEC
Confidence 467889988766889999998863
No 63
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.63 E-value=14 Score=28.92 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.0
Q ss_pred cEEECCEEe----cCCceecCCCEEEEe
Q 015203 106 RIQVDEEMV----PVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v----~~~~~v~~gD~I~~~ 129 (411)
.|.|||+.+ ..++.|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 689999988 468899999999886
No 64
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=35.46 E-value=26 Score=27.29 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.3
Q ss_pred cEEECCEEec----CCceecCCCEEEEe
Q 015203 106 RIQVDEEMVP----VSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~----~~~~v~~gD~I~~~ 129 (411)
.|.|||+-++ .++.|+.||+|.+.
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3789999764 67899999999986
No 65
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=35.40 E-value=9.1 Score=31.23 Aligned_cols=47 Identities=4% Similarity=0.227 Sum_probs=31.3
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHcC------cEEECCEEe----cCCceecCCCEEEEe
Q 015203 80 KTIVDLFAEEFKGRPYDYYVSAVKCG------RIQVDEEMV----PVSYTVKSSQKISHF 129 (411)
Q Consensus 80 ~rL~k~L~~~~~~~Sr~~~~~~I~~G------~V~VNGk~v----~~~~~v~~gD~I~~~ 129 (411)
..|.++|.+.|+...++.+ ...| .|.|||+.+ ..++.|+.||+|.+.
T Consensus 46 ~~Ll~~L~~~~~~~~~~lf---~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 46 RNLLVWIKKNLLKERPELF---IQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp HHHHHHHTTTTCCSCHHHH---CCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred HHHHHHHHHHccchhHhhC---ccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 3466777777655533321 1233 388999876 367999999999875
No 66
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=34.61 E-value=25 Score=28.42 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.0
Q ss_pred cCcEEECCEEecCCceecCCCEEEEe
Q 015203 104 CGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 104 ~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
..-++|||+++.....|+.||+|.+-
T Consensus 79 ~ngt~vNg~~i~~~~~L~~GD~I~iG 104 (120)
T 1wln_A 79 DAETYVDGQRISETTMLQSGMRLQFG 104 (120)
T ss_dssp SSCEEETSCBCSSCEEECTTCEEEET
T ss_pred CCCEEECCEEcCCCEECCCCCEEEEC
Confidence 34678999999766799999999863
No 67
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=32.43 E-value=16 Score=29.33 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=18.8
Q ss_pred HcCcEEECCEEecCCceecCCCEE
Q 015203 103 KCGRIQVDEEMVPVSYTVKSSQKI 126 (411)
Q Consensus 103 ~~G~V~VNGk~v~~~~~v~~gD~I 126 (411)
.+|.|.|||+.+ ....|..||.|
T Consensus 60 ~nGtVFVNGqrv-~~~~I~~gDtI 82 (102)
T 3uv0_A 60 LVGKIFVNDQEE-TVVDIGMENAV 82 (102)
T ss_dssp SSSCEEETTEEE-SEEEECGGGCB
T ss_pred ccCcEEECCEEe-eeEEccCCccc
Confidence 478999999999 66778888863
No 68
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.34 E-value=27 Score=30.32 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEECCEEecC----CceecCCCEEEEe
Q 015203 106 RIQVDEEMVPV----SYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~----~~~v~~gD~I~~~ 129 (411)
.|.|||+.+.. ++.|+.||+|.+.
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 48899999966 8899999999886
No 69
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=28.00 E-value=26 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=19.6
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
-++|||+.+.....|+.||.|.+-
T Consensus 70 Gt~vng~~i~~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 70 GVIVEGRKIEHQSTLSANQVVALG 93 (106)
T ss_dssp CCEETTEECSSEEECCTTCCEEET
T ss_pred CeEECCEECCCCeECCCCCEEEEC
Confidence 478899998766789999999863
No 70
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=26.34 E-value=42 Score=27.26 Aligned_cols=42 Identities=2% Similarity=-0.009 Sum_probs=22.5
Q ss_pred cCcEEECCEEecCCceecCCCEEEEee--ecCCCCCcCCCceEeeeCC
Q 015203 104 CGRIQVDEEMVPVSYTVKSSQKISHFL--HRHEPPVMAWDVSILQKEP 149 (411)
Q Consensus 104 ~G~V~VNGk~v~~~~~v~~gD~I~~~~--~~~e~~~~~~~~~IlyEd~ 149 (411)
+|.|.+||-.+ ..+++||.|.+-- ...+..... ...|+|-|+
T Consensus 69 Sg~I~lNGAAA---r~~~~GD~vII~ay~~~~~~e~~~-~P~vV~vd~ 112 (114)
T 3oug_A 69 SKTIALNGPAA---RRCEIGDQLFIISYTQVDPTRENI-KPKLVDLKT 112 (114)
T ss_dssp SCCEEEEGGGG---GGCCTTCEEEEEEEEEECTTSCCC-CCEEEECC-
T ss_pred CCEEEeCCHHH---hccCCCCEEEEEECCcCCHHHHhc-CCEEEEeCC
Confidence 45666666543 4678999988642 122222222 445666553
No 71
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=24.06 E-value=40 Score=27.79 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=19.0
Q ss_pred CcEEECCEEecCCceecCCCEEEE
Q 015203 105 GRIQVDEEMVPVSYTVKSSQKISH 128 (411)
Q Consensus 105 G~V~VNGk~v~~~~~v~~gD~I~~ 128 (411)
.-++|||+.+.. ..|+.||+|.+
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 358899999864 88999999986
No 72
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=24.03 E-value=57 Score=26.83 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=17.9
Q ss_pred cEEECCEEecCC--ceecCCCEEEE
Q 015203 106 RIQVDEEMVPVS--YTVKSSQKISH 128 (411)
Q Consensus 106 ~V~VNGk~v~~~--~~v~~gD~I~~ 128 (411)
-..|||+.+..+ +.|+.||+|.+
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEE
T ss_pred ceEECCEECCCCceeECCCCCEEEE
Confidence 466788888654 47899999987
No 73
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=23.82 E-value=50 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.3
Q ss_pred cEEECCEEecC-CceecCCCEEEEe
Q 015203 106 RIQVDEEMVPV-SYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~-~~~v~~gD~I~~~ 129 (411)
-++|||+.+.. ...|+.||+|.+-
T Consensus 88 GT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 88 GTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp CEEETTEECCSSCEEECSSEEEEET
T ss_pred CeEECCEEcCCCceECCCCCEEEEC
Confidence 46789999966 4789999999874
No 74
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=21.48 E-value=41 Score=25.32 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=29.2
Q ss_pred CchHHHHHHHhcCCCCHHHHHHHHHcCcEEECCEEecCCceecCCCEEEEe
Q 015203 79 GKTIVDLFAEEFKGRPYDYYVSAVKCGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 79 g~rL~k~L~~~~~~~Sr~~~~~~I~~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
+.++.++......... .+.+ .+.|||+.+++.+.|..++.|.+.
T Consensus 28 ~~T~~dia~~i~~~l~----~~~v---aakvNg~l~dL~~~l~~d~~ve~v 71 (88)
T 1wwt_A 28 KTTPYQIACGISQGLA----DNTV---IAKVNNVVWDLDRPLEEDCTLELL 71 (88)
T ss_dssp TCCHHHHHHHSSTTTG----GGCC---CEEESSSEECSSSCCCSSEEEEEC
T ss_pred CCCHHHHHHHhhhccc----cceE---EEEECCEEECCCcCcCCCCEEEEE
Confidence 4677776655311111 1222 347999999999999999988764
No 75
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=20.72 E-value=50 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=18.7
Q ss_pred cEEECCEEecCCceecCCCEEEEe
Q 015203 106 RIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 106 ~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
-++|||+++. ...|+.||.|.+-
T Consensus 66 Gt~vng~~i~-~~~L~~gd~i~iG 88 (100)
T 3po8_A 66 GTTVNNAPVQ-EWQLADGDVIRLG 88 (100)
T ss_dssp CCEETTEECS-EEECCTTCEEEET
T ss_pred CEEECCEECc-eEECCCCCEEEEC
Confidence 4788999886 4789999999863
No 76
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=20.61 E-value=27 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.4
Q ss_pred cCcEEECCEEecCCceecCCCEEEEe
Q 015203 104 CGRIQVDEEMVPVSYTVKSSQKISHF 129 (411)
Q Consensus 104 ~G~V~VNGk~v~~~~~v~~gD~I~~~ 129 (411)
+|.|.+||-.+ ..+++||.|.+.
T Consensus 42 SG~I~lNGAAA---rl~~~GD~vII~ 64 (96)
T 1vc3_B 42 SGVIGINGAAA---HLVKPGDLVILV 64 (96)
T ss_dssp TTCEEEEGGGG---GTCCTTCEEEEE
T ss_pred CCeEEEchHHH---ccCCCCCEEEEE
Confidence 67888888654 367899998863
Done!