BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015205
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 215/428 (50%), Gaps = 58/428 (13%)
Query: 4 ALKVEIQGREIIKPSHPTPHHLRNLELSLLDQTNYSLYVCTCFLYK--VNNNVKADQVSQ 61
A ++E E+I PS PTP L+ ++S LDQ + ++ Y +++N+ Q SQ
Sbjct: 2 APQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQ 61
Query: 62 RLKSSLSETLTKFYPFAGRVKDDFSIECNDEGVEFIDGRADGFLSEYLQNP------DQK 115
LK SLS+ LT FYP AGR+ + S++CND GV F++ R LS+ +QN DQ
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 116 LLTEFQPFGGKGDPIAGKGPLLILQVTFFKCGGVAITTLSSHKLIDALSSSIFISCWAAV 175
L + P GGK + + PL + +++FF+CGG AI SHK+ D LS + F++ W A
Sbjct: 122 LPSAAYP-GGKIE-VNEDVPLAV-KISFFECGGTAIGVNLSHKIADVLSLATFLNAWTAT 178
Query: 176 ARAES---------------------------------NRFVFDASKLAQLQAEVASASV 202
R E+ RFVFD K+ L+A+ +SAS
Sbjct: 179 CRGETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASE 238
Query: 203 PRP-SRVEALTALIWKCARTASRSNRGFARPSLLVQAVNLRSVVVPPLSENSVGNSIGFM 261
+ SRV+ + A IWK +R+ G ++VQAVNLRS + PPL ++GN +
Sbjct: 239 EKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLL 298
Query: 262 -PAQTSEKEMELQELVCKLRKAKDEFSNNGIQTLLETKSILNVSESTRDKFERDEIDFFS 320
A +E + + +L+ LR + ++ ++ LL+ + L +E + + S
Sbjct: 299 FAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCL---------YELEPQELLS 349
Query: 321 FTSMISFPVHEGADFGWGKPIHVTFPNYTTPNVVILVSTEDGAGIEAFVYLSPEDMPIFE 380
FTS ++ DFGWGKP+ + N +L+ T G G+EA++ ++ ++M +
Sbjct: 350 FTSWCRLGFYD-LDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAML- 407
Query: 381 RSQELLSF 388
ELLS
Sbjct: 408 -PVELLSL 414
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 112/443 (25%), Positives = 181/443 (40%), Gaps = 80/443 (18%)
Query: 4 ALKVEIQGREIIKPSHPTPHHLRNLELSLLDQTNYSLYVCTCFLYKVNNNVKADQVSQRL 63
++K+E++ +++P+ TP RNL S +D + + + + Y+ + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSETLTKFYPFAGRVKDD----FSIECNDEGVEFIDGRADGFLSEYLQNPDQKLLTE 119
K +LS L FYP AGR+K D IECN EGV F++ +DG + ++ L
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 120 FQPFGGKGDPIAGKGPLLILQVTFFKCGGVAITTLSSHKLIDALSSSIFISCWAAVARAE 179
P I+ LL+LQVT+FKCGGV++ H D S FI+ W+ +AR
Sbjct: 122 LIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 180
Query: 180 S-------NRFVFDASKLAQLQAE----------------VASASVPRP----------- 205
+R + A Q Q + AS SVP
Sbjct: 181 DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQ 240
Query: 206 -----------------SRVEALTALIWKCARTASRSNRGFA--RPSLLVQAVNLRSVVV 246
S E L +W+CA A RG + + L A + R+ +
Sbjct: 241 ISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGRARLR 296
Query: 247 PPLSENSVGNSIGFMPAQTSEKEMELQEL---VCKLRKAKDEFSNNGIQT---LLETKSI 300
P L GN I ++E + + K+ A N+ +++ LE +
Sbjct: 297 PSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPD 356
Query: 301 LNVSESTRDKFERDEIDFFSFTSMISFPVHEGADFGWGKPIHVTFPN---YTTPNVVILV 357
L F+ + TS + P+H+ ADFGWG+PI + P Y + ++
Sbjct: 357 LKALVRGAHTFKXPNL---GITSWVRLPIHD-ADFGWGRPIFMG-PGGIAYEGLSFILPS 411
Query: 358 STEDGAGIEAFVYLSPEDMPIFE 380
T DG+ + + L E M +F+
Sbjct: 412 PTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 179/440 (40%), Gaps = 74/440 (16%)
Query: 4 ALKVEIQGREIIKPSHPTPHHLRNLELSLLDQTNYSLYVCTCFLYKVNNNVKADQVSQRL 63
A+K+E++ +++P+ TP RNL S +D + + + + Y+ + ++ L
Sbjct: 2 AMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 58
Query: 64 KSSLSETLTKFYPFAGRVKDD----FSIECNDEGVEFIDGRADGFLSEYLQNPDQKLLTE 119
K +LS L FYP AGR+K D IECN EGV F++ +DG + ++ L
Sbjct: 59 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 118
Query: 120 FQPFGGKGDPIAGKGPLLILQVTFFKCGGVAITTLSSHKLIDALSSSIFISCWAAVARAE 179
P I+ LL+LQVT+FKCGGV++ H D S FI+ W+ +AR
Sbjct: 119 LIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 177
Query: 180 S-------NRFVFDASKLAQLQAE----------------VASASVPRP----------- 205
+R + A Q Q + S SVP
Sbjct: 178 DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQ 237
Query: 206 -----------------SRVEALTALIWKCARTASRSNRGFA--RPSLLVQAVNLRSVVV 246
S E L +W+CA A RG + + L A + R+ +
Sbjct: 238 ISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGRARLR 293
Query: 247 PPLSENSVGNSIGFMPAQTSEKEMELQEL---VCKLRKAKDEFSNNGIQTLLETKSILNV 303
P L GN I ++E + + K+ A N+ +++ L+ +
Sbjct: 294 PSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPD 353
Query: 304 SESTRDKFERDEIDFFSFTSMISFPVHEGADFGWGKPIHVTFPN---YTTPNVVILVSTE 360
++ + TS + P+H+ ADFGWG+PI + P Y + ++ T
Sbjct: 354 LKALVRGAHTFKCPNLGITSWVRLPIHD-ADFGWGRPIFMG-PGGIAYEGLSFILPSPTN 411
Query: 361 DGAGIEAFVYLSPEDMPIFE 380
DG+ + + L E M +F+
Sbjct: 412 DGS-MSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 180/443 (40%), Gaps = 80/443 (18%)
Query: 4 ALKVEIQGREIIKPSHPTPHHLRNLELSLLDQTNYSLYVCTCFLYKVNNNVKADQVSQRL 63
++K+E++ +++P+ TP RNL S +D + + + + Y+ + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSETLTKFYPFAGRVKDD----FSIECNDEGVEFIDGRADGFLSEYLQNPDQKLLTE 119
K +LS L FYP AGR+K D IECN EGV F++ +DG + ++ L
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 120 FQPFGGKGDPIAGKGPLLILQVTFFKCGGVAITTLSSHKLIDALSSSIFISCWAAVARAE 179
P I+ LL+LQVT+FK GGV++ H D S FI+ W+ +AR
Sbjct: 122 LIPAVDYSQGISSYA-LLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 180
Query: 180 S-------NRFVFDASKLAQLQAE----------------VASASVPRP----------- 205
+R + A Q Q + AS SVP
Sbjct: 181 DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQ 240
Query: 206 -----------------SRVEALTALIWKCARTASRSNRGFA--RPSLLVQAVNLRSVVV 246
S E L +W+CA A RG + + L A + R+ +
Sbjct: 241 ISALKAKSKEDGNTISYSSYEMLAGHVWRCACKA----RGLEVDQGTKLYIATDGRARLR 296
Query: 247 PPLSENSVGNSIGFMPAQTSEKEMELQEL---VCKLRKAKDEFSNNGIQT---LLETKSI 300
P L GN I ++E + + K+ A N+ +++ LE +
Sbjct: 297 PSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPD 356
Query: 301 LNVSESTRDKFERDEIDFFSFTSMISFPVHEGADFGWGKPIHVTFPN---YTTPNVVILV 357
L F+ + TS + P+H+ ADFGWG+PI + P Y + ++
Sbjct: 357 LKALVRGAHTFKXPNL---GITSWVRLPIHD-ADFGWGRPIFMG-PGGIAYEGLSFILPS 411
Query: 358 STEDGAGIEAFVYLSPEDMPIFE 380
T DG+ + + L E M +F+
Sbjct: 412 PTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 57 DQVSQRLKSSLSETLTKFYPFAGRV---------KDDFSIECNDEGVEFIDGRADGFLSE 107
+ V +K SLS TL FYPF G++ + +E + V F + D L+E
Sbjct: 59 ETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD--LNE 116
Query: 108 YLQNPDQKL--LTEFQPFGGKGDPIAG--KGPLLILQVTFFKCGGVAITTLSSHKLIDAL 163
N + + P G+ ++ K PL +QVT F G+AI + H L DA
Sbjct: 117 LTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAS 176
Query: 164 SSSIFISCWAAVARAESN 181
+ F+ W ++AR+ +N
Sbjct: 177 TRFCFLKAWTSIARSGNN 194
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 57 DQVSQRLKSSLSETLTKFYPFAGRV---------KDDFSIECNDEGVEFIDGRADGFLSE 107
+ V +K SLS TL FYPF G++ + +E + V F + D L+E
Sbjct: 59 ETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD--LNE 116
Query: 108 YLQNPDQKL--LTEFQPFGGKGDPIAG--KGPLLILQVTFFKCGGVAITTLSSHKLIDAL 163
N + + P G+ ++ K PL +QVT F G+AI + H L DA
Sbjct: 117 LTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDAS 176
Query: 164 SSSIFISCWAAVARAESN 181
+ F+ W ++AR+ +N
Sbjct: 177 TRFCFLKAWTSIARSGNN 194
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 63 LKSSLSETLTKFYPFAGRVK--DDFS-------IECNDEGVEFIDGRAD-GFLSEYLQNP 112
LK SLS TL + P AG V D+S + N V F + D +L Y
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGY-HPR 118
Query: 113 DQKLLTEFQPFGG--KGDPIAGKGPLLILQVTFFKCGGVAITTLSSHKLIDALSSSIFIS 170
+ K F P K P P+L +QVT F G++I + H D + F+
Sbjct: 119 NTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVR 178
Query: 171 CWAAVARAESNRFVFDASKLAQ 192
WA + N+F D LA
Sbjct: 179 AWALL-----NKFGGDEQFLAN 195
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 80 RVKDDFSIECN-----DEGVEFIDGRADGFL-SEYLQNPDQKLLTEF-QPFGGKGDPIAG 132
R+ +I+ N D+G+ IDG G + SE +QN D +L++++ + FG K D IA
Sbjct: 718 RLMKSLTIQRNYVCQGDDGLMIIDGTTAGKVNSETIQN-DLELISKYGEEFGWKYD-IAY 775
Query: 133 KGPLLILQVTFFKCGGVAITTLSSHKLI 160
G L++ F G I LS H ++
Sbjct: 776 DGTAEYLKLYFIF--GCRIPNLSRHPIV 801
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 5 LKVEIQGREIIKPSHPTPHHLRNLELSL--LDQTNYSLYVCTCFLYKVNNNVKAD 57
+ +++ E+ P HP H RNL +L LD +Y V + +L + +D
Sbjct: 131 IAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSD 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,378,286
Number of Sequences: 62578
Number of extensions: 454121
Number of successful extensions: 1184
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1152
Number of HSP's gapped (non-prelim): 21
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)