BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015206
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 177/362 (48%), Gaps = 39/362 (10%)

Query: 62  KIRTIFGVVGVLKLLAGSYLIVITERECVGSYLGHPIYKVASLKILPCDHSLNNSSAEQK 121
           ++  I  ++G +KL    Y I+    E  G + GH  Y+V    I+       NS  + +
Sbjct: 52  EVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKF---NSRIDSE 108

Query: 122 KVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRFLWNNYL 181
             EAE+  LL+L  +    YFSY  +LT S+QR   +G  +     W+ A+ RF WN+YL
Sbjct: 109 --EAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAAS----WKTADERFFWNHYL 162

Query: 182 MEAL-----IDNKLDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGA 236
            E L      D ++D F+ PVI G        +    I + LI RR   R GTR +RRG 
Sbjct: 163 TEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGV 222

Query: 237 DSDGYVANFVETEQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAE 290
           D DG V NF ETEQ++           + SF+Q RGS+P  W +  +L YKP   ++  E
Sbjct: 223 DKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPN--LVLGE 280

Query: 291 EAPRVVERHFLDLRKKYGNVLAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFDFHR 350
            +    ++HF   ++ YG+   V+LVN+ G E  + E + + +  +    I Y++FDFH 
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHH 340

Query: 351 ICGHVHFERLSILFEQI-------EDFLEK------NGYLLLNEKDNVDLVCVPVCCRDN 397
            C  + + R+ +L + +       EDF  K      N   ++NE+ +V    V   C D 
Sbjct: 341 ECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNEQHSV----VRTNCMDC 396

Query: 398 VD 399
           +D
Sbjct: 397 LD 398


>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
          Length = 309

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 270 FLWEQTVDLTYKPKFEILRAEEAPRVVERH-------FLDLRKKYGNVLAVDLVNKHG 320
           FL E+  +L +    E LRA  AP VV +        F+D R+  G+  AV+ V+  G
Sbjct: 191 FLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVG 248


>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved
           Domain(Ecd)
          Length = 210

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 155 LNTLGDESKLLPLWRQAEPRFLWNNYLMEALI 186
           L +L D+SK LPL+     RF W+N    A++
Sbjct: 99  LESLTDKSKELPLYCSGGLRFFWDNKFDHAMV 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,651,774
Number of Sequences: 62578
Number of extensions: 529684
Number of successful extensions: 1043
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 8
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)