Your job contains 1 sequence.
>015207
MRTMVGSKATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLD
CIGSAFNMKGAMQCPNCRRIEKGQWLYANGSTRSLPELSMEDWIPDEDFYDLSYSEMPFR
VHWCPFGEFAQLGSSFEEVEPPSTTYHDLRGHNAIFSSSMAHSYVAYVGPAPLTTSRSSN
NVDDRHINPHWNVLSGQNEIFTPHAFPAVNLQYTSWGRQPPPFSISTGQMNVAEPTSTPH
ATLRSSHGESDAAPIPRSFLHPLVFDHGSGPRAGNSFVSVFPRRPGSGALTRERIHAFHH
RQSSSNSPGLPTTVVPGLRRFDSPRSLPAAVPAPPQHDQNGGFYILPPSSPGHTVHEAEN
PSPNHFHVWERERSYPSPSVSRDSNWGSFHQTTSGSDMGNGLGGFWHRHSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015207
(411 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043438 - symbol:RFI2 "RED AND FAR-RED INSENSI... 633 6.2e-62 1
TAIR|locus:1005716577 - symbol:AT3G05545 "AT3G05545" spec... 590 2.2e-57 1
TAIR|locus:2049083 - symbol:AT2G15260 species:3702 "Arabi... 222 4.4e-16 1
TAIR|locus:2140857 - symbol:AT4G13490 species:3702 "Arabi... 199 2.5e-15 1
UNIPROTKB|H0YAI5 - symbol:RNF4 "E3 ubiquitin-protein liga... 106 3.5e-05 1
UNIPROTKB|E7EVC4 - symbol:TRAIP "TRAF-interacting protein... 100 0.00015 1
UNIPROTKB|G4MXK6 - symbol:MGG_01240 "RING-8 protein" spec... 93 0.00034 2
FB|FBgn0034312 - symbol:CG10916 species:7227 "Drosophila ... 115 0.00039 1
TAIR|locus:2197026 - symbol:AT1G53820 species:3702 "Arabi... 115 0.00057 1
RGD|3583 - symbol:Rnf4 "ring finger protein 4" species:10... 108 0.00099 1
>TAIR|locus:2043438 [details] [associations]
symbol:RFI2 "RED AND FAR-RED INSENSITIVE 2" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
EMBL:AC005309 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
UniGene:At.21841 UniGene:At.36327 eggNOG:NOG278755 EMBL:BT002412
EMBL:BT008845 EMBL:DQ086859 IPI:IPI00527893 PIR:E84918
RefSeq:NP_850478.1 ProteinModelPortal:O82239 SMR:O82239
IntAct:O82239 STRING:O82239 EnsemblPlants:AT2G47700.1 GeneID:819383
KEGG:ath:AT2G47700 TAIR:At2g47700 HOGENOM:HOG000243234
InParanoid:O82239 OMA:FNMKGAM PhylomeDB:O82239
ProtClustDB:CLSN2918291 ArrayExpress:O82239 Genevestigator:O82239
Uniprot:O82239
Length = 358
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 129/248 (52%), Positives = 162/248 (65%)
Query: 17 KDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPN 76
K G+ +D P ++CSICL+ V ++G RS+AKLQCGH+FHLDCIGSAFNMKGAMQCPN
Sbjct: 23 KRGNPEDSSSPVE-VSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPN 81
Query: 77 CRRIEKGQWLYANGSTRSLPELSMEDWIPDEDFYDLSYSEMPFRVHWCPFGEFAQLGSSF 136
CR +EKGQWLYANGSTR PE SMEDWIP+ED Y LSY EM +RVHWCPFGE +Q +SF
Sbjct: 82 CRNVEKGQWLYANGSTRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQAAASF 141
Query: 137 EEVEPPSTTYH-DLRGHNAIFSSSMAHSYVAYVGPAPLTTSRSS-NNVDDRHINPHWNVL 194
EE+EP +TTYH + GH+A +++ HSY+AYVGP P T R+S NN D H P WN
Sbjct: 142 EELEPATTTYHTEFHGHHA---AAVNHSYLAYVGPGPAATPRTSDNNSTDDH--P-WN-- 193
Query: 195 SGQNEIFTPHAFP-AVNLQYTSWGRQPPPFSISTGQMNVAEPTSTP--HATLRSSHGESD 251
S N+ F H P A + S P + G+++ + P H L S
Sbjct: 194 SHSNDHF--HQLPVAPQYHHHSPSFSLPAAHVVDGEVDSSAARGLPYAHPFLFSHRSNQR 251
Query: 252 AAPIPRSF 259
++P S+
Sbjct: 252 SSPAINSY 259
Score = 167 (63.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 51/151 (33%), Positives = 73/151 (48%)
Query: 238 TPHATLRSSH---GESDA-APIPRSFLHPLVFDHGSGPRAGNSFVSVFPRRPGSGALTRE 293
+P +L ++H GE D+ A + HP +F H S R+ + S GS RE
Sbjct: 213 SPSFSLPAAHVVDGEVDSSAARGLPYAHPFLFSHRSNQRSSPAINSY----QGSSTQMRE 268
Query: 294 RIHAFHHRQSSSNSPGLPTTVVPGLRRFDSPRSLPAAVPAPPQHDQNGGFYILPPSSPGH 353
+ HA++H++ ++ G PT P + + R LP P PP DQN GF+I P GH
Sbjct: 269 QHHAYNHQRQQHHANG-PTLASPLISM--TRRGLPPPPPPPPMPDQNVGFFIYPG---GH 322
Query: 354 TVHEAENPSPNHFHVWERE--RSYPSPSVSR 382
HE P + H WER+ +P PS R
Sbjct: 323 --HE---PETDQIHAWERDWFPHFPVPSNHR 348
>TAIR|locus:1005716577 [details] [associations]
symbol:AT3G05545 "AT3G05545" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] InterPro:IPR001841 InterPro:IPR001965 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 SMART:SM00249 EMBL:CP002686
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 HOGENOM:HOG000243234 EMBL:BT001921 EMBL:DQ059111
IPI:IPI00537131 RefSeq:NP_850517.1 UniGene:At.22990
UniGene:At.71225 ProteinModelPortal:Q84WW4 SMR:Q84WW4 PRIDE:Q84WW4
EnsemblPlants:AT3G05545.1 GeneID:819720 KEGG:ath:AT3G05545
TAIR:At3g05545 InParanoid:Q84WW4 OMA:NGDRAWA PhylomeDB:Q84WW4
ProtClustDB:CLSN2918010 Genevestigator:Q84WW4 Uniprot:Q84WW4
Length = 425
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 136/299 (45%), Positives = 171/299 (57%)
Query: 16 QKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCP 75
+ G D D+ + +ACSICL+ V +NG R+ A LQC H+FHLDCIGSAFN KG MQCP
Sbjct: 20 EASGADGDEGDGFGSVACSICLETVVKNGDRAWANLQCDHQFHLDCIGSAFNAKGVMQCP 79
Query: 76 NCRRIEKGQWLYANGSTRSLPELSMEDWIPDEDFYDL-SYSEMPFRVHWCPFGEFAQLGS 134
NCR++EKGQWLYANG RS PE ++EDW+ +ED YD+ +YSEM F VHWCPFG A+L
Sbjct: 80 NCRKVEKGQWLYANGC-RSYPEFNVEDWVHEEDIYDIGAYSEMSFGVHWCPFGSSARL-P 137
Query: 135 SFEEVEPPSTTYHDLRGHNAIFSSSMA----HS--YVAYVGP--APLTTSRSSNNVDDRH 186
SFE+ E ++YHDL G ++ A H YV Y GP +P ++S + V D
Sbjct: 138 SFEDGEFSPSSYHDLLGQQGYYTEPAAPTAGHPCPYVTYFGPVHSPSSSSGGAAGVSDSS 197
Query: 187 -INPHWNVLSG-QNEIFTPHAFPAVNLQYTSWGRQPPP------FSISTGQM-NVAEPTS 237
+ HWN S E+ TP+ FP V+ Y W PPP FS S + + +PT
Sbjct: 198 SFSSHWNTGSSVSGEVPTPYGFP-VDPHYHGWDYHPPPPPPPQHFSASGAHVGSPTQPTP 256
Query: 238 TPHATLRSSHGESDAA-PIPRSFLHPLVFDHGSGPRAGNSFVSVFPRRPG-SGALTRER 294
P A S SD P P F P H S RAG+S SV PR P G+ R R
Sbjct: 257 PPAAARTSRANGSDMIRPRPPHFTRPF-HGHSSSGRAGSSVASV-PRTPPFPGSNARTR 313
Score = 195 (73.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 85/266 (31%), Positives = 115/266 (43%)
Query: 164 YVAYVGP--APLTTSRSSNNVDDRH-INPHWNVLSG-QNEIFTPHAFPAVNLQYTSWGRQ 219
YV Y GP +P ++S + V D + HWN S E+ TP+ FP V+ Y W
Sbjct: 173 YVTYFGPVHSPSSSSGGAAGVSDSSSFSSHWNTGSSVSGEVPTPYGFP-VDPHYHGWDYH 231
Query: 220 PPP------FSISTGQM-NVAEPTSTPHATLRSSHGESDAA-PIPRSFLHPLVFDHGSGP 271
PPP FS S + + +PT P A S SD P P F P H S
Sbjct: 232 PPPPPPPQHFSASGAHVGSPTQPTPPPAAARTSRANGSDMIRPRPPHFTRPF-HGHSSSG 290
Query: 272 RAGNSFVSVFPRRP---GSGALTRERIHAF--HHRQSSSNSPGLPTTVVPGLRRFDSPRS 326
RAG+S SV PR P GS A TR+R+ A +++QSS+ S + +V F S R
Sbjct: 291 RAGSSVASV-PRTPPFPGSNARTRDRMQALQAYYQQSSAQSHQPDSPIVSRGPVFPSGRR 349
Query: 327 LPAAVPAPPQHDQNGGFYILPPSSPGHTVHEAENPSPNHFHVWERE------RSYPSPSV 380
PA A G S + +A F++WER+ ++Y +
Sbjct: 350 -PARGIA-------SGM-----GSTSSSSDQAGGSGFIRFNIWERDPYMQSQQAYSVNQM 396
Query: 381 SRDSN-WGSFHQTTSGS-DMGNGLGG 404
R+ N W S SGS +G GG
Sbjct: 397 DREPNIWTSSFNEGSGSFHQRHGGGG 422
>TAIR|locus:2049083 [details] [associations]
symbol:AT2G15260 species:3702 "Arabidopsis thaliana"
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC007267 IPI:IPI00548037
PIR:G84526 RefSeq:NP_179128.1 UniGene:At.52748
ProteinModelPortal:Q9SHV0 SMR:Q9SHV0 EnsemblPlants:AT2G15260.1
GeneID:816015 KEGG:ath:AT2G15260 TAIR:At2g15260 eggNOG:NOG239624
HOGENOM:HOG000215029 InParanoid:Q9SHV0 OMA:IVKSEVC
ProtClustDB:CLSN2913101 Genevestigator:Q9SHV0 Uniprot:Q9SHV0
Length = 362
Score = 222 (83.2 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 50/120 (41%), Positives = 70/120 (58%)
Query: 17 KDGHD---DDDIEPSSGLACSICLD-LVSENGI-RSRAKLQCGHEFHLDCIGSAFNMKGA 71
++ HD D D L CSIC LV+EN + R+ L+C H+FHLDCIGSA+N KG
Sbjct: 105 EENHDSPKDSDYLGDLDL-CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGF 163
Query: 72 MQCPNCRRIEKGQWLYANGSTRSLPELSMEDWIPDEDFYDLSYSEMPFRVHWCPFGEFAQ 131
M+CPNCR IE G W +++G+ + + + +ED S+S+M + CPFG Q
Sbjct: 164 MECPNCRNIEPGHWQFSDGTHFNPNGMIANNEEEEEDNDPGSFSQMIVKSEVCPFGCLGQ 223
>TAIR|locus:2140857 [details] [associations]
symbol:AT4G13490 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
EMBL:AL049656 EMBL:AL161536 IPI:IPI00537652 PIR:T06651
RefSeq:NP_193085.1 UniGene:At.54307 ProteinModelPortal:Q9T0H0
SMR:Q9T0H0 EnsemblPlants:AT4G13490.1 GeneID:826981
KEGG:ath:AT4G13490 TAIR:At4g13490 eggNOG:NOG279419
HOGENOM:HOG000153579 InParanoid:Q9T0H0 OMA:KMECPCC PhylomeDB:Q9T0H0
ProtClustDB:CLSN2916123 Genevestigator:Q9T0H0 Uniprot:Q9T0H0
Length = 226
Score = 199 (75.1 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 25 IEPSSGLACSICLD-LVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83
+EP C++CL+ L ++ R+ KL+C H+FHLDC+GS+FN+K M+CP CR+IEKG
Sbjct: 14 VEPFDDDDCAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKG 73
Query: 84 QWLYA 88
+WL+A
Sbjct: 74 KWLFA 78
>UNIPROTKB|H0YAI5 [details] [associations]
symbol:RNF4 "E3 ubiquitin-protein ligase RNF4" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AL110117 EMBL:AL645924
EMBL:BX322586 EMBL:CR450722 EMBL:CR545473 HGNC:HGNC:10067
ChiTaRS:RNF4 Ensembl:ENST00000508235 Uniprot:H0YAI5
Length = 106
Score = 106 (42.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 10 TDHGPHQKDGHDDDDIEPSSGLACSICLDLVSE---NGIRSRAKLQCGHEFHLDCIGSAF 66
T H P + PS ++C IC+D SE NG R +CGH F C+ +
Sbjct: 25 TTHTPRNARDEGATGLRPSGTVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS- 82
Query: 67 NMKGAMQCPNCRR 79
+K A CP CR+
Sbjct: 83 -LKNANTCPTCRK 94
>UNIPROTKB|E7EVC4 [details] [associations]
symbol:TRAIP "TRAF-interacting protein" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC139451 HGNC:HGNC:30764 ChiTaRS:TRAIP IPI:IPI00946250
ProteinModelPortal:E7EVC4 SMR:E7EVC4 Ensembl:ENST00000473195
ArrayExpress:E7EVC4 Bgee:E7EVC4 Uniprot:E7EVC4
Length = 99
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84
C+IC D + R A + CGH FHL C+ F + CP CR I+ G+
Sbjct: 7 CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR-IQVGK 55
>UNIPROTKB|G4MXK6 [details] [associations]
symbol:MGG_01240 "RING-8 protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CM001232 RefSeq:XP_003714144.1
ProteinModelPortal:G4MXK6 EnsemblFungi:MGG_01240T0 GeneID:2679419
KEGG:mgr:MGG_01240 Uniprot:G4MXK6
Length = 480
Score = 93 (37.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 16 QKDGHDDDDIEP----SSGLACSICLD-LVSENGIRSRAKLQCGHEFHLDCIGSAFNMKG 70
++D H I P SSG C+IC+D L ++ +R L CGH FH C+ +
Sbjct: 262 EEDDHITAAIPPELLESSGDTCAICIDTLEDDDDVRG---LTCGHAFHAVCVDPWLTSRR 318
Query: 71 AMQCPNCR 78
A CP C+
Sbjct: 319 AC-CPLCK 325
Score = 71 (30.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 272 RAGNSFVSVFPRRPGSGALTRERIHAFHHRQSSSNSPGLPTTVVPGLRRFDSPRSLPAA- 330
R N++ S RR +G ++ S S PGL T + +R D P ++ A
Sbjct: 366 RPSNTWTSFMTRRTNTGGQQVQQQPQTASAGSDSGRPGLFTRL--RAQRNDGPPTMSGAA 423
Query: 331 -VPAPPQHD---QNGGFY 344
V AP Q+D NGGF+
Sbjct: 424 QVHAPSQNDPSSNNGGFF 441
>FB|FBgn0034312 [details] [associations]
symbol:CG10916 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:AE013599
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00530000064431 InterPro:IPR006616 InterPro:IPR024518
Pfam:PF11901 SMART:SM00696 EMBL:AY061504 RefSeq:NP_611303.1
UniGene:Dm.683 SMR:Q7K1R6 EnsemblMetazoa:FBtr0086749
EnsemblMetazoa:FBtr0332853 GeneID:37081 KEGG:dme:Dmel_CG10916
UCSC:CG10916-RA FlyBase:FBgn0034312 eggNOG:NOG255899
InParanoid:Q7K1R6 OMA:CGICNEF OrthoDB:EOG4P2NJ3 GenomeRNAi:37081
NextBio:801859 Uniprot:Q7K1R6
Length = 263
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 41/138 (29%), Positives = 59/138 (42%)
Query: 23 DDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR---- 78
+D PS + C+IC + N I +CGH FH DC+ N + CP CR
Sbjct: 22 NDSSPSLNILCAICNEFFRANDIIFSTS-RCGHVFHKDCLTRWLNR--SRTCPQCRDPCD 78
Query: 79 --RIEKGQWLYANG---STRSLPELSMEDWIPDEDFYDLSYSEMPFRVHWCPFGEFAQLG 133
R+ + +A LP+++M DW+P DL +P H P G Q G
Sbjct: 79 RRRVHRLYLNFAEAPEFDDTELPKVAM-DWVP----IDLDRDSLP-DAHLPPEGA-VQCG 131
Query: 134 SSFEEVEPPSTT---YHD 148
++ E+ P YHD
Sbjct: 132 TN-EDGLPTYVARGYYHD 148
>TAIR|locus:2197026 [details] [associations]
symbol:AT1G53820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 GO:GO:0016021
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540
HOGENOM:HOG000034162 ProtClustDB:CLSN2715378 EMBL:AC009324
EMBL:DQ056496 IPI:IPI00517219 RefSeq:NP_175785.1 UniGene:At.52187
ProteinModelPortal:P0C035 SMR:P0C035 PRIDE:P0C035
EnsemblPlants:AT1G53820.1 GeneID:841819 KEGG:ath:AT1G53820
TAIR:At1g53820 InParanoid:P0C035 OMA:IDEEEPK PhylomeDB:P0C035
Genevestigator:P0C035 GermOnline:AT1G53820 Uniprot:P0C035
Length = 310
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 48/170 (28%), Positives = 72/170 (42%)
Query: 30 GLACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYA 88
GL C++CL DLV +G ++R +C H FH+DCI F CP CR
Sbjct: 117 GLECAVCLSDLV--DGDKARVLPRCNHGFHVDCIDMWFQSHST--CPLCRNTVGSVEDTT 172
Query: 89 NGSTRSLPEL-------SMEDWIPDED--F-YDLSYSEMPFRVHWCPFGEFAQLGSSFEE 138
+G + LP+ S P +D F ++ S + F + +G+ Q+ S+
Sbjct: 173 HGGSEGLPQNQNFESGHSTNQHNPSQDQSFVHEFSTEPLSFPTNVLVWGDQNQVRSAGLV 232
Query: 139 V--EPPSTTYH-DLRGHNAIFSSSMAHSYVAYVGPAPLTTSRSSNNVDDR 185
V E PS + H SS+ + A V P SS N+ +R
Sbjct: 233 VTEESPSGNFAASYNDHQQESSSTRSQEVTAVVVDIP---DNSSENLSER 279
>RGD|3583 [details] [associations]
symbol:Rnf4 "ring finger protein 4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA;IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0016605 "PML body"
evidence=ISO;IDA] [GO:0017025 "TBP-class protein binding"
evidence=TAS] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IDA] [GO:0032184 "SUMO
polymer binding" evidence=IPI] [GO:0033142 "progesterone receptor
binding" evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS;IDA] [GO:0046685 "response to
arsenic-containing substance" evidence=ISO;IDA] [GO:0050681 "androgen
receptor binding" evidence=IPI] [GO:0051865 "protein
autoubiquitination" evidence=IMP] [GO:0070534 "protein K63-linked
ubiquitination" evidence=IDA] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0070979 "protein K11-linked
ubiquitination" evidence=IDA] [GO:0085020 "protein K6-linked
ubiquitination" evidence=IDA] [GO:0090169 "regulation of spindle
assembly" evidence=ISO;ISS] [GO:0090234 "regulation of kinetochore
assembly" evidence=ISO;ISS] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 RGD:3583
Prosite:PS00518 GO:GO:0005737 GO:GO:0005654 GO:GO:0043161
GO:GO:0046685 GO:GO:0046872 GO:GO:0003677 GO:GO:0016605 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0070979 GO:GO:0030331 InterPro:IPR017907
GO:GO:0070936 GO:GO:0070534 GO:GO:0031491 GO:GO:0051865 GO:GO:0085020
GO:GO:0017025 CTD:6047 eggNOG:NOG327779 HOGENOM:HOG000059548
HOVERGEN:HBG018577 OrthoDB:EOG4S4PHN GO:GO:0090234 GO:GO:0090169
GeneTree:ENSGT00390000010318 EMBL:AF022081 EMBL:AY050655
EMBL:BC062024 IPI:IPI00213362 RefSeq:NP_062055.1 UniGene:Rn.30015
PDB:3NG2 PDB:4AP4 PDBsum:3NG2 PDBsum:4AP4 ProteinModelPortal:O88846
SMR:O88846 STRING:O88846 PhosphoSite:O88846 PRIDE:O88846
Ensembl:ENSRNOT00000019555 GeneID:29274 KEGG:rno:29274
InParanoid:O88846 EvolutionaryTrace:O88846 NextBio:608631
Genevestigator:O88846 GermOnline:ENSRNOG00000013930 Uniprot:O88846
Length = 194
Score = 108 (43.1 bits), Expect = 0.00099, P = 0.00099
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 10 TDHGPHQKDGHDDDDIEPSSGLACSICLDLVSE---NGIRSRAKLQCGHEFHLDCIGSAF 66
T H P + PS ++C IC+D SE NG R +CGH F C+ +
Sbjct: 113 TTHTPRSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS- 170
Query: 67 NMKGAMQCPNCRR 79
+K A CP CR+
Sbjct: 171 -LKNANTCPTCRK 182
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 411 411 0.00080 118 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 624 (66 KB)
Total size of DFA: 309 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.33u 0.18s 41.51t Elapsed: 00:00:02
Total cpu time: 41.33u 0.18s 41.51t Elapsed: 00:00:02
Start: Fri May 10 10:04:58 2013 End: Fri May 10 10:05:00 2013