BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015207
(411 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 20 HDDDDIEPSSGLACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
++ D ++ G CS+C+ D V+ N +R +L C HEFH+ CI + CP CR
Sbjct: 601 YEQDGVDSELGKVCSVCISDYVAGNKLR---QLPCLHEFHIHCIDRWLSEN--CTCPVCR 655
Query: 79 R 79
R
Sbjct: 656 R 656
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 30 GLACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYA 88
GL C++CL DLV +G ++R +C H FH+DCI F CP CR
Sbjct: 117 GLECAVCLSDLV--DGDKARVLPRCNHGFHVDCIDMWFQSHST--CPLCRNTVGSVEDTT 172
Query: 89 NGSTRSLPE 97
+G + LP+
Sbjct: 173 HGGSEGLPQ 181
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 42.7 bits (99), Expect = 0.006, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 13 GPHQK-DGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGA 71
GP + G DD+ G +C IC ++ +R L+CGH+FH C +KG
Sbjct: 1910 GPSARTKGQKKDDVPAPDGNSCEICHEIFKSKNMRV---LKCGHKFHKGCFKQW--LKGQ 1964
Query: 72 MQCPNC 77
CP C
Sbjct: 1965 STCPTC 1970
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 22 DDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
D E GL C+ICL E I R C H FH +CI ++ CP CRR
Sbjct: 103 KDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQW--LESNKTCPVCRR 158
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 23 DDIEPSSG-----LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77
D EP S L C IC D ++EN + K+ CGH F +C+ ++ CP C
Sbjct: 92 DSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKW--LENHCTCPLC 149
Query: 78 RR 79
R+
Sbjct: 150 RK 151
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 20 HDDDDIEPSSGLACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
++ + I+ G CS+C+ D V+ N +R +L C HEFH+ CI + CP CR
Sbjct: 619 YEHNSIDSELGKICSVCISDYVTGNKLR---QLPCMHEFHIHCIDRWLSENCT--CPICR 673
Query: 79 RIEKGQWLYANG 90
+ G + NG
Sbjct: 674 QPVLGSNIANNG 685
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYAN 89
C+IC D + R A + CGH FHL C+ F + CP C RI+ G+ N
Sbjct: 7 CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC-RIQVGKRTIIN 60
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
CS+CL E+ R +CGH FH+DCI + F + + CP CR
Sbjct: 113 CSVCLSEFEEDD-EGRVLPKCGHVFHVDCIDTWFRSRSS--CPLCR 155
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 30 GLACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83
GL CSICL +LV G ++R +C H FH++CI F CP CR G
Sbjct: 124 GLECSICLSELV--KGDKARLLPKCNHSFHVECIDMWFQSHST--CPICRNTVLG 174
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYAN 89
C+IC D + R A + CGH FHL C+ F + CP C RI+ G+ N
Sbjct: 7 CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQC-RIQVGKKTIIN 60
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 8 KATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN 67
K P G D+ E + C+ICL ++ E+G R +L C H FH C+
Sbjct: 270 KYKKRRPQDSKGKKDEGEESDTDEKCTICLSML-EDGEDVR-RLPCMHLFHQLCVDQWLA 327
Query: 68 MKGAMQCPNCR 78
M + +CP CR
Sbjct: 328 M--SKKCPICR 336
>sp|O88846|RNF4_RAT E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1
SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 9 ATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSE---NGIRSRAKLQCGHEFHLDCIGSA 65
T H P + PS ++C IC+D SE NG R +CGH F C+ +
Sbjct: 112 VTTHTPRSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS 170
Query: 66 FNMKGAMQCPNCRR 79
+K A CP CR+
Sbjct: 171 --LKNANTCPTCRK 182
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
+ CSICL ++ ++R ++C H F +CI + + G +CP CR+
Sbjct: 101 VQCSICLGIIR----KTRTVMECLHRFCRECIDKSMRL-GNNECPTCRK 144
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 8 KATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN 67
K P G D+ E + C+ICL ++ E+G R +L C H FH C+
Sbjct: 269 KYKKRRPQDGKGKKDEGEESDTDEKCTICLSML-EDGEDVR-RLPCMHLFHQLCVDQWLA 326
Query: 68 MKGAMQCPNCR 78
M + +CP CR
Sbjct: 327 M--SKKCPICR 335
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 33 CSICLDLVSE-NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
CS+C+ +E N +R KL C HE+H+ CI + CP CRR
Sbjct: 703 CSVCITEYTEGNKLR---KLPCSHEYHIHCIDRWLSENST--CPICRR 745
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 32 ACSICLDLVSE-NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
CS+C+ +E N +R KL C HE+H+ CI + CP CRR
Sbjct: 567 TCSVCITEYTEGNKLR---KLPCSHEYHIHCIDRWLSENST--CPICRR 610
>sp|Q61010|DTX1_MOUSE E3 ubiquitin-protein ligase DTX1 OS=Mus musculus GN=Dtx1 PE=1 SV=2
Length = 627
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 16/64 (25%)
Query: 33 CSICLD-LVSENG----IRSRAKL--------QCGHEFHLDCIGSAF---NMKGAMQCPN 76
C+IC++ LV+ +G +R+++ +CGH +HL C+ + + N G++QCP
Sbjct: 418 CTICMERLVTASGYEGVLRNKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 477
Query: 77 CRRI 80
C+ I
Sbjct: 478 CKAI 481
>sp|Q86Y01|DTX1_HUMAN E3 ubiquitin-protein ligase DTX1 OS=Homo sapiens GN=DTX1 PE=1 SV=1
Length = 620
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 16/64 (25%)
Query: 33 CSICLD-LVSENGIRS-------RAKL-----QCGHEFHLDCIGSAF---NMKGAMQCPN 76
C+IC++ LV+ +G R +L +CGH +HL C+ + + N G++QCP
Sbjct: 411 CTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 470
Query: 77 CRRI 80
C+ I
Sbjct: 471 CKAI 474
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 23 DDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
DD SS +C ICL+ + NG R C H FH CI G CP CR
Sbjct: 756 DDASLSSADSCLICLETYT-NGDICRKLQACKHFFHQACIDQWL-TTGNNSCPLCR 809
>sp|P78317|RNF4_HUMAN E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1
Length = 190
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 9 ATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSE---NGIRSRAKLQCGHEFHLDCIGSA 65
T H P + PS ++C IC+D SE NG R +CGH F C+ +
Sbjct: 108 VTTHTPRNARDEGATGLRPSGTVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS 166
Query: 66 FNMKGAMQCPNCRR 79
+K A CP CR+
Sbjct: 167 --LKNANTCPTCRK 178
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
CS+CL E R +CGH FH+DCI + F + CP CR
Sbjct: 108 CSVCLSEFEEED-EGRLLPKCGHSFHVDCIDTWFRSRST--CPLCR 150
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 32 ACSICLDLVSE-NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
CS+C+ +E N +R KL C HE+H+ CI + CP CRR
Sbjct: 584 TCSVCITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENST--CPICRR 627
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 32 ACSICLDLVSE-NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
CS+C+ +E N +R KL C HE+H+ CI + CP CRR
Sbjct: 545 TCSVCITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENST--CPICRR 588
>sp|Q9Y2E6|DTX4_HUMAN E3 ubiquitin-protein ligase DTX4 OS=Homo sapiens GN=DTX4 PE=1 SV=2
Length = 619
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
Query: 33 CSICLD-LVSENGIRS---------RAKL-QCGHEFHLDCIGSAF---NMKGAMQCPNCR 78
C+IC++ L + +G + KL +CGH +H+ C+ + + N G++QCP C+
Sbjct: 409 CTICMERLTAPSGYKGPQPTVKPDLVGKLSRCGHVYHIYCLVAMYNNGNKDGSLQCPTCK 468
Query: 79 RI 80
I
Sbjct: 469 TI 470
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 26 EPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85
E + C ICL ++ ++R ++C H F +CI + + G +CP CR+
Sbjct: 129 EIRKDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRL-GNNECPACRK------ 177
Query: 86 LYANGSTRSLPELSMEDWIPDEDFYDL-SYSEMPFRVHWCPFGEFAQLGSSFEEV 139
S RSL + D + F ++ SY E H Q+ +S ++
Sbjct: 178 --HCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQI 230
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
Query: 25 IEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS-AFNMKGAMQCPNCRRIEKG 83
+E L C ICL++ E+ + LQCGH + C+ S ++++ ++CP C
Sbjct: 8 LELEDRLQCPICLEVFKESLM-----LQCGHSYCKGCLVSLSYHLDTKVRCPMC------ 56
Query: 84 QWLYANGSTRSLPELSMEDWIPD 106
W +GS+ SLP +S+ W+ +
Sbjct: 57 -WQVVDGSS-SLPNVSLA-WVIE 76
>sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
Length = 194
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 27 PSSGLACSICLDLVSE---NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
PS ++C IC+D SE NG R +CGH F C+ + +K A CP CR+
Sbjct: 130 PSGTVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDS--LKNANTCPTCRK 182
>sp|Q6PDK8|DTX4_MOUSE E3 ubiquitin-protein ligase DTX4 OS=Mus musculus GN=Dtx4 PE=1 SV=2
Length = 616
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
Query: 33 CSICLD-LVSENGIRS---------RAKL-QCGHEFHLDCIGSAF---NMKGAMQCPNCR 78
C+IC++ L + +G + KL +CGH +H+ C+ + + N G++QCP C+
Sbjct: 406 CTICMERLTAPSGYKGPQPTVKPDLVGKLSRCGHIYHIYCLVAMYNNGNKDGSLQCPTCK 465
Query: 79 RI 80
I
Sbjct: 466 TI 467
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
Query: 25 IEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS-AFNMKGAMQCPNCRRIEKG 83
+E L C ICL++ E+ + LQCGH + C+ S ++++ ++CP C
Sbjct: 8 LELEDWLQCPICLEVFKESLM-----LQCGHSYCKGCLVSLSYHLDTKVRCPMC------ 56
Query: 84 QWLYANGSTRSLPELSMEDWIPD 106
W +GS+ SLP +S+ W+ +
Sbjct: 57 -WQVVDGSS-SLPNVSLA-WVIE 76
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 32 ACSICLDLVSE-NGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
CS+C+ +E N +R KL C HE+H+ CI + CP CRR
Sbjct: 569 TCSVCITEYTEGNKLR---KLPCSHEYHVHCIDRWLSENST--CPICRR 612
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKG-AMQCPNCRRI 80
L+CS+CL+L E CGH F + C+ + ++G +CP CR++
Sbjct: 11 LSCSVCLELFKEP-----VTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKV 56
>sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2
PE=1 SV=3
Length = 622
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 33 CSICL----------DLVSENGIRSRAK---LQCGHEFHLDCIGSAF---NMKGAMQCPN 76
C IC+ D+ I S A +C H FHL C+ + + N G++QCP+
Sbjct: 412 CIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 471
Query: 77 CRRI 80
C+ I
Sbjct: 472 CKTI 475
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 32 ACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
C++CL D VS++ IR K CGH FH C+ + CP CR
Sbjct: 84 CCTVCLSDFVSDDKIRQLPK--CGHVFHHRCLDRWIVDCNKITCPICR 129
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
+S C++CL ++ E ++R C H FH+DC+ + + CP CR
Sbjct: 103 ASATECAVCLSVLKEQD-KARELPNCKHIFHVDCVDTW--LTTCSTCPVCR 150
>sp|Q6VVB1|NHLC1_HUMAN E3 ubiquitin-protein ligase NHLRC1 OS=Homo sapiens GN=NHLRC1 PE=1
SV=2
Length = 395
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 5 VGSKATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64
+ ++A++ GP + + +I S L C +C + R L CGH L C+ +
Sbjct: 1 MAAEASESGPALHELMREAEI---SLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAA 57
Query: 65 -AFNMKGAMQCPNCRRIEKG 83
A A++CP CRR +G
Sbjct: 58 LAHPRTLALECPFCRRACRG 77
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 15 HQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKL----QCGHEFHLDCI-----GSA 65
H+KD ++ S + C IC+++V E S + C H + L CI
Sbjct: 263 HEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQ 322
Query: 66 FNMKGAMQCPNCR 78
F K CP CR
Sbjct: 323 FESKIIKSCPECR 335
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 6 GSKATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSA 65
K D K G +D+ L CS+CL+ V+ I L C H+FH CI
Sbjct: 191 AEKMLDSANESKKGTEDE-------LTCSVCLEQVTVGEIVR--TLPCLHQFHAGCIDPW 241
Query: 66 FNMKGAMQCPNCR 78
+G CP C+
Sbjct: 242 LRQQGT--CPVCK 252
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 15 HQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKL----QCGHEFHLDCI-----GSA 65
H+KD ++ S + C IC+++V E S + C H + L CI
Sbjct: 259 HEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQ 318
Query: 66 FNMKGAMQCPNCR 78
F K CP CR
Sbjct: 319 FESKIIKSCPECR 331
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
+G C++CL L+ E +R C H FH+ C+ + + CP CR
Sbjct: 96 AGTECAVCLSLLEEKD-NARMLPNCKHVFHVSCVDTWLTTQST--CPVCR 142
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 32 ACSICL-DLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
C++CL D S++ +R K CGH FH C+ M+CP CR
Sbjct: 85 CCTVCLSDFESDDKVRQLPK--CGHVFHHYCLDRWIVDYNKMKCPVCR 130
>sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus GN=Rfwd3 PE=2
SV=1
Length = 774
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 25 IEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAM-QCPNCRRIEK 82
+E G C+ICL+ + G + L+CGH F CI +KG +CP C + K
Sbjct: 280 MEDEEGETCTICLEQWTNAGDHRISALRCGHLFGFRCISKW--LKGQTRKCPQCNKKAK 336
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79
+ CSICLD + E ++CGH F +CI S +G CP CRR
Sbjct: 14 VTCSICLDPMVEP-----MSIECGHSFCQECI-SEVGKEGGSVCPVCRR 56
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 15 HQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKL----QCGHEFHLDCI-----GSA 65
H+KD ++ S + C IC+++V E S + C H + L CI
Sbjct: 229 HEKDMELSFAVQRSKDIVCGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKWRSAKQ 288
Query: 66 FNMKGAMQCPNCR 78
F K CP CR
Sbjct: 289 FESKIIKSCPECR 301
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-----GAMQCPNCR 78
CS+CLD + E + CGH F L CI S F K G CP CR
Sbjct: 15 CSVCLDFLQEP-----ISVDCGHSFCLRCI-SEFCEKSDSAQGVYACPQCR 59
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
C IC E+ + KL CGH FH C+ S F + CP CR
Sbjct: 289 CIIC----REDMVNHSKKLPCGHIFHTTCLRSWFQRQQT--CPTCR 328
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRI 80
L C +C L E I L+CGH F CI ++ A CP C+ +
Sbjct: 161 LTCPLCRSLFKEPVI-----LECGHNFCKHCIDKSWESASAFSCPECKEV 205
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 15 HQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKL----QCGHEFHLDCI-----GSA 65
H+KD ++ + + C IC+++V E S + C H + L CI
Sbjct: 263 HEKDMELSFAVQRTKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQ 322
Query: 66 FNMKGAMQCPNCR 78
F K CP CR
Sbjct: 323 FESKIIKSCPECR 335
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRI 80
C+ICL + +G R CGH FH++CI + + CP+CRRI
Sbjct: 102 CAICLTDFA-DGEEIRVLPLCGHSFHVECIDKWLVSRSS--CPSCRRI 146
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78
L C+ICL+ E+ R +C H FH CIG+ ++G + CP CR
Sbjct: 121 ALECAICLNEF-EDDETLRLLPKCDHVFHPHCIGAW--LQGHVTCPVCR 166
>sp|Q8AW93|DTX1_XENLA E3 ubiquitin-protein ligase DTX1 OS=Xenopus laevis GN=dtx1 PE=2
SV=1
Length = 623
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 16/64 (25%)
Query: 33 CSICLD----------LVSENGIRSR--AKL-QCGHEFHLDCIGSAFN---MKGAMQCPN 76
C+IC++ ++S GIR+ KL +C H +H+ C + +N G++QCP
Sbjct: 413 CTICMERLVTASGYDGVLSHRGIRAELVGKLGKCNHMYHVLCPVAMYNNGNKDGSLQCPT 472
Query: 77 CRRI 80
C+ I
Sbjct: 473 CKAI 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,573,045
Number of Sequences: 539616
Number of extensions: 8150039
Number of successful extensions: 18867
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 18776
Number of HSP's gapped (non-prelim): 343
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)