Query 015207
Match_columns 411
No_of_seqs 216 out of 1469
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 99.0 1.9E-10 4.2E-15 108.0 5.2 53 27-84 15-81 (193)
2 PF13639 zf-RING_2: Ring finge 98.9 2.5E-10 5.5E-15 82.3 1.5 43 32-78 2-44 (44)
3 PF15227 zf-C3HC4_4: zinc fing 98.9 6.6E-10 1.4E-14 80.4 3.2 40 33-77 1-42 (42)
4 KOG0823 Predicted E3 ubiquitin 98.9 1.1E-09 2.4E-14 104.9 4.9 54 27-85 44-98 (230)
5 KOG0320 Predicted E3 ubiquitin 98.8 3.8E-09 8.3E-14 97.9 4.4 69 9-82 110-178 (187)
6 KOG0317 Predicted E3 ubiquitin 98.8 4.2E-09 9.1E-14 103.7 4.3 52 27-85 236-287 (293)
7 KOG4628 Predicted E3 ubiquitin 98.8 3.2E-09 7E-14 107.5 3.5 48 31-81 230-277 (348)
8 PHA02929 N1R/p28-like protein; 98.8 4.6E-09 9.9E-14 101.9 3.7 53 27-81 171-226 (238)
9 smart00504 Ubox Modified RING 98.7 1.4E-08 3.1E-13 77.3 4.0 46 30-82 1-46 (63)
10 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.7E-08 3.7E-13 81.0 4.3 46 31-78 20-73 (73)
11 PHA02926 zinc finger-like prot 98.7 8.4E-09 1.8E-13 98.7 2.4 56 26-81 166-229 (242)
12 PF00097 zf-C3HC4: Zinc finger 98.6 1.5E-08 3.3E-13 71.5 2.6 41 33-77 1-41 (41)
13 PF13920 zf-C3HC4_3: Zinc fing 98.6 1.7E-08 3.6E-13 74.8 2.5 46 30-82 2-48 (50)
14 PF13923 zf-C3HC4_2: Zinc fing 98.6 2E-08 4.3E-13 70.9 2.3 39 33-77 1-39 (39)
15 cd00162 RING RING-finger (Real 98.5 7.1E-08 1.5E-12 67.1 3.7 45 32-81 1-45 (45)
16 COG5243 HRD1 HRD ubiquitin lig 98.5 4.3E-08 9.3E-13 99.6 2.9 53 27-81 284-344 (491)
17 TIGR00599 rad18 DNA repair pro 98.5 8.2E-08 1.8E-12 99.2 4.4 48 27-81 23-70 (397)
18 COG5540 RING-finger-containing 98.5 8.5E-08 1.8E-12 95.3 3.3 52 28-82 321-372 (374)
19 smart00184 RING Ring finger. E 98.4 3.1E-07 6.7E-12 61.6 3.5 39 33-77 1-39 (39)
20 PF14634 zf-RING_5: zinc-RING 98.3 3.8E-07 8.2E-12 66.1 3.4 44 32-79 1-44 (44)
21 KOG2177 Predicted E3 ubiquitin 98.3 1.9E-07 4.1E-12 86.2 1.9 45 28-79 11-55 (386)
22 KOG2164 Predicted E3 ubiquitin 98.3 2.5E-07 5.5E-12 97.2 2.9 49 30-83 186-237 (513)
23 PF04564 U-box: U-box domain; 98.3 4.5E-07 9.8E-12 72.5 3.4 50 29-84 3-52 (73)
24 PF13445 zf-RING_UBOX: RING-ty 98.3 3E-07 6.5E-12 67.2 2.2 41 33-75 1-43 (43)
25 KOG0802 E3 ubiquitin ligase [P 98.2 3.7E-07 8E-12 97.6 1.8 52 28-81 289-340 (543)
26 KOG0287 Postreplication repair 98.2 4.1E-07 8.9E-12 91.7 1.5 44 31-81 24-67 (442)
27 PF12861 zf-Apc11: Anaphase-pr 98.2 1.3E-06 2.8E-11 72.6 3.9 52 30-81 21-81 (85)
28 COG5574 PEX10 RING-finger-cont 98.2 7.7E-07 1.7E-11 87.1 2.5 49 29-82 214-262 (271)
29 KOG1039 Predicted E3 ubiquitin 98.0 2.1E-06 4.6E-11 87.4 2.4 107 28-140 159-278 (344)
30 COG5432 RAD18 RING-finger-cont 98.0 2.2E-06 4.7E-11 85.1 2.4 44 31-81 26-69 (391)
31 TIGR00570 cdk7 CDK-activating 97.8 1.6E-05 3.4E-10 80.0 4.2 51 31-83 4-55 (309)
32 KOG0311 Predicted E3 ubiquitin 97.8 2.5E-06 5.4E-11 86.5 -1.5 48 29-81 42-89 (381)
33 KOG4265 Predicted E3 ubiquitin 97.8 1.9E-05 4.1E-10 80.2 4.0 49 26-81 286-335 (349)
34 KOG1734 Predicted RING-contain 97.6 2.3E-05 4.9E-10 77.3 2.0 59 31-89 225-288 (328)
35 PF11793 FANCL_C: FANCL C-term 97.5 2.3E-05 4.9E-10 62.6 0.5 53 30-82 2-66 (70)
36 KOG1645 RING-finger-containing 97.5 5.4E-05 1.2E-09 78.2 3.3 52 30-81 4-55 (463)
37 KOG0824 Predicted E3 ubiquitin 97.5 4E-05 8.7E-10 76.5 2.0 49 31-85 8-56 (324)
38 KOG0978 E3 ubiquitin ligase in 97.4 4.4E-05 9.5E-10 83.7 1.2 49 30-84 643-691 (698)
39 COG5194 APC11 Component of SCF 97.4 0.00014 3E-09 60.0 3.5 49 31-81 21-80 (88)
40 smart00744 RINGv The RING-vari 97.3 0.0002 4.3E-09 53.5 3.5 44 32-78 1-49 (49)
41 PF14835 zf-RING_6: zf-RING of 97.3 5.2E-05 1.1E-09 60.1 0.1 44 30-81 7-50 (65)
42 KOG4172 Predicted E3 ubiquitin 97.3 6.4E-05 1.4E-09 58.0 0.6 46 31-82 8-54 (62)
43 COG5219 Uncharacterized conser 97.2 0.00011 2.3E-09 82.2 1.5 54 28-81 1467-1522(1525)
44 PF11789 zf-Nse: Zinc-finger o 97.2 0.00019 4.2E-09 55.3 2.2 44 29-76 10-53 (57)
45 KOG0828 Predicted E3 ubiquitin 97.2 0.00021 4.5E-09 75.4 2.9 53 29-82 570-634 (636)
46 KOG1493 Anaphase-promoting com 97.2 0.00014 3.1E-09 59.4 1.2 50 32-81 22-80 (84)
47 KOG0827 Predicted E3 ubiquitin 97.2 0.0002 4.4E-09 73.7 2.5 50 31-81 5-55 (465)
48 KOG1785 Tyrosine kinase negati 97.2 0.00016 3.5E-09 74.7 1.7 49 31-84 370-418 (563)
49 KOG1002 Nucleotide excision re 97.2 0.00014 3E-09 77.3 1.0 48 29-81 535-585 (791)
50 KOG0825 PHD Zn-finger protein 97.1 0.00015 3.3E-09 79.7 0.6 46 32-81 125-170 (1134)
51 KOG2879 Predicted E3 ubiquitin 97.1 0.00048 1E-08 68.2 4.0 51 27-81 236-286 (298)
52 KOG4159 Predicted E3 ubiquitin 97.0 0.00031 6.7E-09 73.1 2.2 47 28-81 82-128 (398)
53 KOG0804 Cytoplasmic Zn-finger 97.0 0.00027 5.9E-09 73.8 1.3 46 31-81 176-221 (493)
54 KOG2660 Locus-specific chromos 96.9 0.00025 5.4E-09 71.7 -0.0 47 29-81 14-60 (331)
55 COG5152 Uncharacterized conser 96.8 0.00054 1.2E-08 65.3 2.0 49 31-86 197-245 (259)
56 KOG0297 TNF receptor-associate 96.6 0.00097 2.1E-08 69.2 1.7 47 28-81 19-66 (391)
57 KOG1941 Acetylcholine receptor 96.2 0.0018 3.8E-08 67.0 1.1 53 28-81 363-415 (518)
58 KOG1813 Predicted E3 ubiquitin 96.0 0.0031 6.7E-08 63.1 1.5 48 31-85 242-289 (313)
59 KOG4692 Predicted E3 ubiquitin 95.9 0.0045 9.9E-08 63.4 2.5 52 24-82 416-467 (489)
60 COG5222 Uncharacterized conser 95.8 0.0045 9.8E-08 62.3 2.1 43 31-79 275-318 (427)
61 KOG3039 Uncharacterized conser 95.7 0.0084 1.8E-07 58.9 3.2 57 27-86 218-274 (303)
62 KOG4275 Predicted E3 ubiquitin 95.7 0.0019 4.2E-08 64.6 -1.1 41 30-81 300-341 (350)
63 KOG1814 Predicted E3 ubiquitin 95.4 0.0083 1.8E-07 62.5 2.4 49 30-80 184-238 (445)
64 PF14570 zf-RING_4: RING/Ubox 95.4 0.011 2.5E-07 44.4 2.5 47 33-81 1-47 (48)
65 COG5236 Uncharacterized conser 94.9 0.018 3.9E-07 59.0 2.9 50 27-81 58-107 (493)
66 PHA03096 p28-like protein; Pro 94.9 0.014 3.1E-07 58.4 2.1 50 31-80 179-232 (284)
67 KOG1428 Inhibitor of type V ad 94.8 0.0088 1.9E-07 69.8 0.4 53 27-81 3483-3543(3738)
68 KOG1001 Helicase-like transcri 94.8 0.013 2.8E-07 65.0 1.6 48 31-84 455-502 (674)
69 KOG2930 SCF ubiquitin ligase, 94.8 0.023 5E-07 49.2 2.7 49 30-80 46-106 (114)
70 COG5175 MOT2 Transcriptional r 94.7 0.019 4.1E-07 58.7 2.6 48 32-81 16-63 (480)
71 KOG4185 Predicted E3 ubiquitin 94.7 0.021 4.5E-07 56.3 2.7 50 31-81 4-54 (296)
72 KOG0826 Predicted E3 ubiquitin 94.6 0.026 5.7E-07 57.4 3.0 48 28-81 298-345 (357)
73 PHA02825 LAP/PHD finger-like p 94.4 0.044 9.6E-07 50.7 4.0 50 28-83 6-60 (162)
74 KOG1571 Predicted E3 ubiquitin 94.3 0.035 7.5E-07 57.1 3.2 43 29-81 304-346 (355)
75 KOG4445 Uncharacterized conser 94.2 0.014 3.1E-07 58.8 0.2 52 30-83 115-187 (368)
76 KOG4739 Uncharacterized protei 93.8 0.033 7.1E-07 54.4 1.8 51 31-88 4-54 (233)
77 KOG2932 E3 ubiquitin ligase in 93.3 0.047 1E-06 55.4 2.0 43 31-81 91-133 (389)
78 KOG4367 Predicted Zn-finger pr 93.2 0.058 1.3E-06 56.9 2.6 35 28-67 2-36 (699)
79 PF08746 zf-RING-like: RING-li 93.1 0.085 1.8E-06 38.5 2.7 40 33-77 1-43 (43)
80 PF04641 Rtf2: Rtf2 RING-finge 93.1 0.098 2.1E-06 51.4 3.9 52 27-82 110-161 (260)
81 PF10272 Tmpp129: Putative tra 93.0 0.11 2.3E-06 53.9 4.1 29 53-81 311-350 (358)
82 KOG3161 Predicted E3 ubiquitin 92.8 0.04 8.6E-07 60.3 0.8 43 31-79 12-54 (861)
83 KOG1952 Transcription factor N 92.8 0.12 2.7E-06 58.1 4.5 50 29-79 190-244 (950)
84 PF14447 Prok-RING_4: Prokaryo 92.7 0.047 1E-06 42.2 0.8 43 30-81 7-49 (55)
85 PF12906 RINGv: RING-variant d 92.5 0.067 1.4E-06 39.7 1.5 42 33-77 1-47 (47)
86 KOG3800 Predicted E3 ubiquitin 92.4 0.1 2.2E-06 52.4 3.1 48 32-81 2-50 (300)
87 COG5220 TFB3 Cdk activating ki 92.1 0.038 8.3E-07 54.3 -0.3 52 30-83 10-65 (314)
88 KOG1940 Zn-finger protein [Gen 91.6 0.12 2.7E-06 51.7 2.5 48 29-79 157-204 (276)
89 KOG4362 Transcriptional regula 90.7 0.065 1.4E-06 59.3 -0.4 47 30-81 21-68 (684)
90 KOG2114 Vacuolar assembly/sort 90.3 0.15 3.4E-06 57.4 2.1 42 31-81 841-882 (933)
91 PHA02862 5L protein; Provision 90.3 0.23 5E-06 45.5 2.8 48 31-84 3-55 (156)
92 PF05883 Baculo_RING: Baculovi 90.3 0.13 2.9E-06 46.4 1.3 35 30-66 26-66 (134)
93 KOG3970 Predicted E3 ubiquitin 90.0 0.28 6.1E-06 48.0 3.3 48 31-81 51-104 (299)
94 PF07800 DUF1644: Protein of u 89.9 0.34 7.4E-06 44.9 3.6 53 30-87 2-96 (162)
95 PF05290 Baculo_IE-1: Baculovi 89.5 0.28 6E-06 44.4 2.7 50 29-83 79-133 (140)
96 PF02891 zf-MIZ: MIZ/SP-RING z 89.5 0.22 4.8E-06 37.4 1.8 45 31-80 3-50 (50)
97 PF10367 Vps39_2: Vacuolar sor 89.0 0.17 3.6E-06 41.9 0.9 34 27-63 75-108 (109)
98 KOG1609 Protein involved in mR 88.3 0.63 1.4E-05 45.5 4.5 52 29-81 77-133 (323)
99 KOG2817 Predicted E3 ubiquitin 88.1 0.4 8.6E-06 50.1 3.0 49 30-80 334-383 (394)
100 PLN02189 cellulose synthase 88.1 0.69 1.5E-05 53.6 5.2 53 29-82 33-87 (1040)
101 KOG0298 DEAD box-containing he 86.8 0.19 4.2E-06 58.8 -0.0 46 29-81 1152-1198(1394)
102 PLN02436 cellulose synthase A 86.2 0.98 2.1E-05 52.5 5.1 52 30-82 36-89 (1094)
103 KOG3002 Zn finger protein [Gen 85.6 0.56 1.2E-05 47.5 2.5 44 28-82 46-91 (299)
104 KOG1812 Predicted E3 ubiquitin 84.8 0.49 1.1E-05 49.3 1.7 51 30-81 146-202 (384)
105 KOG3899 Uncharacterized conser 84.6 0.54 1.2E-05 47.6 1.8 29 53-81 325-364 (381)
106 PLN02400 cellulose synthase 83.9 1.4 3E-05 51.5 4.9 53 29-82 35-89 (1085)
107 KOG3268 Predicted E3 ubiquitin 83.5 0.78 1.7E-05 43.6 2.3 31 51-81 188-227 (234)
108 PLN02638 cellulose synthase A 83.0 1.8 3.8E-05 50.6 5.3 52 30-82 17-70 (1079)
109 KOG0825 PHD Zn-finger protein 82.9 1.2 2.7E-05 50.2 3.8 52 29-81 95-153 (1134)
110 COG5183 SSM4 Protein involved 82.4 1.5 3.3E-05 49.7 4.3 56 30-88 12-72 (1175)
111 KOG2034 Vacuolar sorting prote 82.3 0.82 1.8E-05 52.0 2.3 36 29-67 816-851 (911)
112 KOG1815 Predicted E3 ubiquitin 79.8 1.6 3.4E-05 46.1 3.3 50 29-82 69-126 (444)
113 KOG3053 Uncharacterized conser 78.0 1.4 2.9E-05 44.0 2.0 54 27-81 17-81 (293)
114 PLN02915 cellulose synthase A 78.0 2.9 6.2E-05 48.8 4.8 52 30-82 15-68 (1044)
115 KOG2231 Predicted E3 ubiquitin 77.1 2.3 5E-05 47.4 3.7 75 32-112 2-83 (669)
116 KOG3579 Predicted E3 ubiquitin 77.1 2.3 5.1E-05 43.0 3.4 45 27-76 265-316 (352)
117 PF03854 zf-P11: P-11 zinc fin 76.5 1.3 2.8E-05 33.6 1.0 43 31-82 3-46 (50)
118 PLN02195 cellulose synthase A 75.2 2.9 6.2E-05 48.5 3.8 52 30-82 6-59 (977)
119 KOG3039 Uncharacterized conser 73.0 2.1 4.5E-05 42.6 1.8 33 31-68 44-76 (303)
120 KOG1100 Predicted E3 ubiquitin 71.7 2.1 4.5E-05 41.2 1.4 38 33-81 161-199 (207)
121 PF05605 zf-Di19: Drought indu 69.0 2.4 5.1E-05 31.9 1.0 40 30-81 2-41 (54)
122 KOG3799 Rab3 effector RIM1 and 68.7 2.4 5.2E-05 38.7 1.1 62 28-91 63-132 (169)
123 PF14569 zf-UDP: Zinc-binding 64.8 9.4 0.0002 31.7 3.7 52 30-82 9-62 (80)
124 KOG1812 Predicted E3 ubiquitin 62.8 4.4 9.5E-05 42.4 1.9 46 30-77 306-351 (384)
125 PF10497 zf-4CXXC_R1: Zinc-fin 59.5 12 0.00025 32.4 3.6 54 28-81 5-71 (105)
126 KOG0309 Conserved WD40 repeat- 59.5 5.9 0.00013 44.9 2.2 42 30-76 1028-1069(1081)
127 KOG2169 Zn-finger transcriptio 58.7 3.1E+02 0.0066 30.8 16.1 48 31-82 307-356 (636)
128 KOG4185 Predicted E3 ubiquitin 58.0 2 4.3E-05 42.4 -1.6 50 30-80 207-265 (296)
129 PF02318 FYVE_2: FYVE-type zin 54.8 0.76 1.6E-05 40.0 -4.6 52 29-81 53-104 (118)
130 PF14446 Prok-RING_1: Prokaryo 54.1 12 0.00025 29.0 2.4 34 30-64 5-38 (54)
131 COG5109 Uncharacterized conser 53.0 9 0.00019 39.5 2.1 49 30-80 336-385 (396)
132 KOG4718 Non-SMC (structural ma 50.3 8.5 0.00018 37.6 1.4 44 31-80 182-225 (235)
133 KOG2068 MOT2 transcription fac 49.7 15 0.00032 37.9 3.0 51 31-84 250-300 (327)
134 COG0068 HypF Hydrogenase matur 49.3 9.1 0.0002 43.1 1.6 54 28-81 99-183 (750)
135 KOG0827 Predicted E3 ubiquitin 48.1 1.5 3.3E-05 46.0 -4.3 53 29-84 195-247 (465)
136 smart00249 PHD PHD zinc finger 41.5 11 0.00025 25.7 0.6 32 32-65 1-32 (47)
137 KOG1829 Uncharacterized conser 41.2 11 0.00024 41.5 0.8 46 29-79 510-558 (580)
138 COG3813 Uncharacterized protei 39.0 32 0.0007 28.4 2.9 45 32-81 7-51 (84)
139 PF04710 Pellino: Pellino; In 36.1 12 0.00026 39.6 0.0 50 31-83 278-340 (416)
140 PF00628 PHD: PHD-finger; Int 35.7 5.3 0.00012 29.0 -1.9 46 32-79 1-50 (51)
141 PF06906 DUF1272: Protein of u 35.3 52 0.0011 25.8 3.4 45 32-81 7-51 (57)
142 TIGR00143 hypF [NiFe] hydrogen 35.1 20 0.00043 40.5 1.5 53 29-81 67-150 (711)
143 PF10235 Cript: Microtubule-as 33.2 22 0.00049 30.2 1.2 35 31-81 45-79 (90)
144 PF06844 DUF1244: Protein of u 32.9 25 0.00054 28.4 1.3 13 56-68 11-23 (68)
145 PF09986 DUF2225: Uncharacteri 30.6 39 0.00085 32.4 2.5 61 70-137 4-64 (214)
146 KOG3113 Uncharacterized conser 27.7 63 0.0014 32.6 3.4 49 28-81 109-157 (293)
147 KOG0802 E3 ubiquitin ligase [P 27.5 44 0.00095 36.4 2.5 43 29-82 478-520 (543)
148 KOG2066 Vacuolar assembly/sort 27.4 24 0.00052 40.3 0.6 43 32-77 786-830 (846)
149 KOG2807 RNA polymerase II tran 27.0 47 0.001 34.5 2.5 46 30-79 330-375 (378)
150 PRK01343 zinc-binding protein; 26.7 26 0.00055 27.5 0.4 35 70-106 8-42 (57)
151 PRK00418 DNA gyrase inhibitor; 26.4 19 0.00041 28.7 -0.3 36 71-106 6-43 (62)
152 KOG3842 Adaptor protein Pellin 25.6 31 0.00068 35.7 0.9 49 31-82 291-352 (429)
153 PF07191 zinc-ribbons_6: zinc- 24.5 5.1 0.00011 32.6 -3.9 40 30-81 1-40 (70)
154 KOG1356 Putative transcription 24.0 21 0.00046 40.9 -0.6 48 31-81 230-281 (889)
155 PF10146 zf-C4H2: Zinc finger- 23.0 56 0.0012 32.1 2.1 23 57-81 196-218 (230)
156 KOG3842 Adaptor protein Pellin 22.9 70 0.0015 33.3 2.8 55 30-84 341-416 (429)
157 smart00647 IBR In Between Ring 22.8 23 0.0005 26.3 -0.5 35 32-66 20-59 (64)
158 PF13901 DUF4206: Domain of un 22.1 76 0.0016 30.2 2.8 44 29-79 151-197 (202)
159 PF04216 FdhE: Protein involve 21.9 19 0.00041 35.8 -1.4 45 29-80 171-220 (290)
160 smart00064 FYVE Protein presen 20.7 83 0.0018 24.1 2.3 35 31-66 11-45 (68)
161 KOG3005 GIY-YIG type nuclease 20.5 54 0.0012 33.1 1.4 51 31-81 183-242 (276)
162 KOG0824 Predicted E3 ubiquitin 20.4 28 0.00061 35.7 -0.6 47 29-81 104-150 (324)
163 KOG4443 Putative transcription 20.4 52 0.0011 37.0 1.4 52 30-81 18-72 (694)
164 KOG0269 WD40 repeat-containing 20.3 88 0.0019 35.9 3.1 45 31-80 780-826 (839)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.9e-10 Score=108.00 Aligned_cols=53 Identities=28% Similarity=0.604 Sum_probs=44.2
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--------------CCCCCCCCCccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--------------KGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--------------k~s~tCPiCR~~v~~n 84 (411)
...+++|+||++.+.++ +++.|||.||..||.+|+.. ++...||+||..+...
T Consensus 15 ~~~~~~CpICld~~~dP-----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP-----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCc-----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 44668999999999988 88999999999999999852 2345899999998443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.94 E-value=2.5e-10 Score=82.32 Aligned_cols=43 Identities=40% Similarity=0.913 Sum_probs=35.9
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR 78 (411)
+|+||++.+... ..++.++|+|.||.+||.+|++.. .+||+||
T Consensus 2 ~C~IC~~~~~~~--~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG--EKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT--SCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCC--CeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 699999999753 445888999999999999999753 5899997
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.93 E-value=6.6e-10 Score=80.40 Aligned_cols=40 Identities=38% Similarity=1.020 Sum_probs=31.6
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcCCC--CCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGA--MQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s--~tCPiC 77 (411)
|+||+++|.+| +.|+|||.||..||.+|++.... ..||.|
T Consensus 1 CpiC~~~~~~P-----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP-----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE-----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc-----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 99999999999999999976433 479988
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-09 Score=104.90 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=46.0
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCcccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRIEKGQW 85 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~v~~n~ 85 (411)
....++|.||||..++| +++.|||.||.-||.+|+... ..+.||+||..+....
T Consensus 44 ~~~~FdCNICLd~akdP-----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP-----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCC-----EEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 34568999999999999 999999999999999999763 4567899999985443
No 5
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.8e-09 Score=97.91 Aligned_cols=69 Identities=35% Similarity=0.712 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 9 ATDHGPHQKDGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 9 a~d~~p~qk~~e~~ed~e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...+++..+..+..+...++..+.|+|||+.+.+. ..+-+.|||.||..||+..+. ....||+|++.+.
T Consensus 110 ~~~~spp~~~~k~v~~~~~~~~~~CPiCl~~~sek---~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 110 VTVHSPPNRRDKDVDPLRKEGTYKCPICLDSVSEK---VPVSTKCGHVFCSQCIKDALK--NTNKCPTCRKKIT 178 (187)
T ss_pred cccccCCCcccccccccccccccCCCceecchhhc---cccccccchhHHHHHHHHHHH--hCCCCCCcccccc
Confidence 44455555555555555566779999999998753 225689999999999999994 4458999999773
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.2e-09 Score=103.73 Aligned_cols=52 Identities=33% Similarity=0.627 Sum_probs=44.3
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
.+....|.||++...+| ..++|||.||..||..|..++. .||.||..+..+.
T Consensus 236 ~~a~~kC~LCLe~~~~p-----SaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP-----SATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC-----CcCcCcchHHHHHHHHHHcccc--CCCcccccCCCcc
Confidence 33457899999999999 8999999999999999997655 5999999985443
No 7
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.2e-09 Score=107.55 Aligned_cols=48 Identities=31% Similarity=0.711 Sum_probs=41.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..|+||+|.|.+. .+.++|+|+|.||..||..|+.+. ...||+||+.+
T Consensus 230 ~~CaIClEdY~~G--dklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKG--DKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccC--CeeeEecCCCchhhccchhhHhhc-CccCCCCCCcC
Confidence 5899999999875 556889999999999999999754 34699999865
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.76 E-value=4.6e-09 Score=101.87 Aligned_cols=53 Identities=28% Similarity=0.548 Sum_probs=40.7
Q ss_pred CCCCcccccccccccccCc---cceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGI---RSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~---~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+.+.+|+||++.+.++.. +..++++|+|.||..||.+|+. ...+||+||+.+
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~ 226 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEe
Confidence 3456789999998765311 1125668999999999999995 345899999987
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.70 E-value=1.4e-08 Score=77.32 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.0
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
++.|+||.+.+.+| ++++|||.||+.||.+|+.. ...||.|++.+.
T Consensus 1 ~~~Cpi~~~~~~~P-----v~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDP-----VILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCC-----EECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 36899999999999 99999999999999999965 458999998873
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.69 E-value=1.7e-08 Score=80.96 Aligned_cols=46 Identities=30% Similarity=0.651 Sum_probs=35.2
Q ss_pred cccccccccccccC--------ccceEEecCCCcchHHHHHHHHhcCCCCCCCCCc
Q 015207 31 LACSICLDLVSENG--------IRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78 (411)
Q Consensus 31 l~C~ICLe~f~dP~--------~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR 78 (411)
..|+||++.+.++. +..++...|||.||..||.+|++ ...+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence 35999999995432 34456678999999999999995 445999997
No 11
>PHA02926 zinc finger-like protein; Provisional
Probab=98.67 E-value=8.4e-09 Score=98.74 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=41.9
Q ss_pred CCCCCccccccccccccc---Ccc-ceEEecCCCcchHHHHHHHHhcC----CCCCCCCCcccc
Q 015207 26 EPSSGLACSICLDLVSEN---GIR-SRAKLQCGHEFHLDCIGSAFNMK----GAMQCPNCRRIE 81 (411)
Q Consensus 26 e~s~el~C~ICLe~f~dP---~~~-~~v~LpCGH~FC~~CI~~wl~sk----~s~tCPiCR~~v 81 (411)
..+.+.+|+||+|.+-++ .++ --++.+|+|.||..||..|...+ ....||+||..+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 355678999999976432 222 22566999999999999999753 245799999987
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.65 E-value=1.5e-08 Score=71.53 Aligned_cols=41 Identities=37% Similarity=0.929 Sum_probs=36.1
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
|+||++.+.++ ..+++|||.||..||.+|++..+...||.|
T Consensus 1 C~iC~~~~~~~----~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP----VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE----EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC----CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999887 248999999999999999986566789998
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.63 E-value=1.7e-08 Score=74.80 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=38.3
Q ss_pred CcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+..|.||++...+. +.++|||. ||..|+.+|+. ....||+||+.+.
T Consensus 2 ~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDV-----VLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSE-----EEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCce-----EEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 45799999987766 89999999 99999999996 5568999999863
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.61 E-value=2e-08 Score=70.90 Aligned_cols=39 Identities=36% Similarity=0.884 Sum_probs=32.6
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
|+||++.+.++ ++.++|||.||..||.+|++. ...||+|
T Consensus 1 C~iC~~~~~~~----~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP----VVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE----EEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCc----CEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999876 568999999999999999975 4689998
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.55 E-value=7.1e-08 Score=67.07 Aligned_cols=45 Identities=38% Similarity=0.772 Sum_probs=36.1
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|+||++.+.++ ..+++|+|.||..|+..|++. +...||.||+.+
T Consensus 1 ~C~iC~~~~~~~----~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREP----VVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCc----eEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 499999998554 345569999999999999964 456799998753
No 16
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.3e-08 Score=99.57 Aligned_cols=53 Identities=32% Similarity=0.712 Sum_probs=43.1
Q ss_pred CCCCcccccccccccccC--------ccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENG--------IRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~--------~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
...+..|.||+|.+..++ +...+.|+|||.+|..|++.|++.++ +||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 455678999999866554 33457899999999999999997544 899999996
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=8.2e-08 Score=99.22 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=41.9
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+..+.|+||++.+.+| ++++|||.||..||..|+.. ...||.||..+
T Consensus 23 Le~~l~C~IC~d~~~~P-----vitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~ 70 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP-----VLTSCSHTFCSLCIRRCLSN--QPKCPLCRAED 70 (397)
T ss_pred cccccCCCcCchhhhCc-----cCCCCCCchhHHHHHHHHhC--CCCCCCCCCcc
Confidence 34568999999999998 88999999999999999964 34799999987
No 18
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.5e-08 Score=95.33 Aligned_cols=52 Identities=29% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
..+.+|+||++.|.+. +..+.|+|.|.||..|+.+|+.. -+.+||+||..++
T Consensus 321 ~~GveCaICms~fiK~--d~~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKN--DRLRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhccc--ceEEEeccCceechhHHHHHHhh-hcccCCccCCCCC
Confidence 3568999999999754 33689999999999999999963 3458999998763
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.38 E-value=3.1e-07 Score=61.62 Aligned_cols=39 Identities=38% Similarity=0.948 Sum_probs=33.3
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
|+||++....+ +.++|+|.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~~~-----~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP-----VVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc-----EEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 88999986655 8899999999999999996 345579987
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.35 E-value=3.8e-07 Score=66.13 Aligned_cols=44 Identities=32% Similarity=0.742 Sum_probs=36.2
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
.|.||++.+. .++..++++|||.||..||..+. .....||+||+
T Consensus 1 ~C~~C~~~~~--~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--EERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--CCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 4999999993 23446999999999999999987 45568999985
No 21
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.9e-07 Score=86.18 Aligned_cols=45 Identities=38% Similarity=0.974 Sum_probs=40.3
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
.+++.|+||++.|.+| ++++|+|.||..||..++. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p-----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP-----VLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC-----ccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 4568899999999998 9999999999999999986 5578999994
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=97.17 Aligned_cols=49 Identities=37% Similarity=0.726 Sum_probs=42.3
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc---CCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM---KGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s---k~s~tCPiCR~~v~~ 83 (411)
+..|+||++....| +.+.|||.||..||.++|+. ++...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p-----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 68899999998887 77889999999999999875 456789999998843
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.31 E-value=4.5e-07 Score=72.49 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
+++.|+||.+++.+| ++++|||+|++.||..|+.. +...||.|++.+...
T Consensus 3 ~~f~CpIt~~lM~dP-----Vi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP-----VILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE-----EEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc-----eeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc
Confidence 568999999999999 99999999999999999964 356899999887443
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=3e-07 Score=67.17 Aligned_cols=41 Identities=32% Similarity=0.740 Sum_probs=23.5
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcC--CCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK--GAMQCP 75 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk--~s~tCP 75 (411)
|+||.+ +.++ +...++|+|||+||.+||.+++... +...||
T Consensus 1 CpIc~e-~~~~-~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE-ENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT-SS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC-CCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7662 3334889999999999999999753 456776
No 25
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.7e-07 Score=97.63 Aligned_cols=52 Identities=35% Similarity=0.714 Sum_probs=42.7
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..+..|.||+|.+.........+++|+|.||..|+++|++. ..+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhh
Confidence 34568999999998743344589999999999999999975 44899999954
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.22 E-value=4.1e-07 Score=91.68 Aligned_cols=44 Identities=30% Similarity=0.646 Sum_probs=40.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+.|.||.+.|..| ++++|+|+||..||+.+++. .-+||.|+..+
T Consensus 24 LRC~IC~eyf~ip-----~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~ 67 (442)
T KOG0287|consen 24 LRCGICFEYFNIP-----MITPCSHTFCSLCIRKFLSY--KPQCPTCCVTV 67 (442)
T ss_pred HHHhHHHHHhcCc-----eeccccchHHHHHHHHHhcc--CCCCCceeccc
Confidence 6899999999999 99999999999999999964 44899999887
No 27
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.20 E-value=1.3e-06 Score=72.61 Aligned_cols=52 Identities=29% Similarity=0.519 Sum_probs=40.3
Q ss_pred Ccccccccccccc-------cC-ccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCcccc
Q 015207 30 GLACSICLDLVSE-------NG-IRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~d-------P~-~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~v 81 (411)
+..|.||...|.. |+ +.+++.-.|+|.||..||.+|+++. ...+||+||+..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4579999988873 22 3345666899999999999999863 346999999986
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.7e-07 Score=87.09 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=40.9
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.++.|.||++....+ ..++|||.||..||...+..+...-||.||+.+.
T Consensus 214 ~d~kC~lC~e~~~~p-----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVP-----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCc-----ccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 478899999999998 9999999999999999333344445999999873
No 29
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.1e-06 Score=87.42 Aligned_cols=107 Identities=22% Similarity=0.403 Sum_probs=61.9
Q ss_pred CCCcccccccccccccC--ccce-EEecCCCcchHHHHHHHHhcCC-----CCCCCCCccccccc-----cccccCcccC
Q 015207 28 SSGLACSICLDLVSENG--IRSR-AKLQCGHEFHLDCIGSAFNMKG-----AMQCPNCRRIEKGQ-----WLYANGSTRS 94 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~--~~~~-v~LpCGH~FC~~CI~~wl~sk~-----s~tCPiCR~~v~~n-----~l~a~~~e~~ 94 (411)
..+..|.||++.+.+.. ++.. ++.+|.|.||..||..|-..++ .+.||.||...... |+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~---- 234 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE---- 234 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc----
Confidence 45789999999876542 1112 3357999999999999985544 67999999876211 222111
Q ss_pred CCCCCcCCCCCCCcccCCCCCCCCCcccccccccccccccccccCC
Q 015207 95 LPELSMEDWIPDEDFYDLSYSEMPFRVHWCPFGEFAQLGSSFEEVE 140 (411)
Q Consensus 95 ~~ei~~dd~~~dEd~~d~s~sEl~~~~~wCpf~~L~ql~S~f~e~E 140 (411)
.....++++..+-...+ +.-+.-+.+.|||+........+-.+.
T Consensus 235 ~k~~li~e~~~~~s~~~--c~yf~~~~g~cPf~s~~~y~h~~~~~~ 278 (344)
T KOG1039|consen 235 EKQKLIEEYEAEMSAKD--CKYFSQGLGSCPFGSKCFYKHLLPSGA 278 (344)
T ss_pred cccccHHHHHHHhhccc--hhhhcCCCCCCCCCCcccccccccccc
Confidence 11111111111101111 111234567899988877776666555
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=2.2e-06 Score=85.10 Aligned_cols=44 Identities=34% Similarity=0.650 Sum_probs=39.7
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+.|-||.+.|..| ..++|||+||..||+..+.. .-.||+||...
T Consensus 26 lrC~IC~~~i~ip-----~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRISIP-----CETTCGHTFCSLCIRRHLGT--QPFCPVCREDP 69 (391)
T ss_pred HHhhhhhheeecc-----eecccccchhHHHHHHHhcC--CCCCccccccH
Confidence 6799999999998 99999999999999999954 44799999877
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=1.6e-05 Score=79.97 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=36.8
Q ss_pred ccccccccc-ccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 31 LACSICLDL-VSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 31 l~C~ICLe~-f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
..|+||... +..+. ....+..|||.||..||...+.. +...||.|++.+..
T Consensus 4 ~~CP~Ck~~~y~np~-~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcc-cccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 579999994 33442 21222279999999999998753 55689999998833
No 32
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.5e-06 Score=86.46 Aligned_cols=48 Identities=35% Similarity=0.809 Sum_probs=40.3
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.++.|+|||++++.. +....|.|.||.+||...+.. +...||.||+.+
T Consensus 42 ~~v~c~icl~llk~t----mttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT----MTTKECLHRFCFDCIWKALRS-GNNECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhc
Confidence 457899999999865 355689999999999988874 456999999987
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.9e-05 Score=80.24 Aligned_cols=49 Identities=33% Similarity=0.594 Sum_probs=40.5
Q ss_pred CCCCCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCcccc
Q 015207 26 EPSSGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 26 e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+.+...+|.||+...++- ++|+|.|. .|..|.+... -+...||+||+.+
T Consensus 286 ~~~~gkeCVIClse~rdt-----~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi 335 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDT-----VVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPI 335 (349)
T ss_pred cccCCCeeEEEecCCcce-----EEecchhhehhHhHHHHHH--HhhcCCCccccch
Confidence 345568999999998876 99999997 8999998865 3445799999997
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.3e-05 Score=77.31 Aligned_cols=59 Identities=24% Similarity=0.495 Sum_probs=45.0
Q ss_pred cccccccccccccC-cc----ceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccccccc
Q 015207 31 LACSICLDLVSENG-IR----SRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYAN 89 (411)
Q Consensus 31 l~C~ICLe~f~dP~-~~----~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l~a~ 89 (411)
-.|+||-..+.... +. ...+|.|+|.||..||+-|.--....+||.||+.+....+..+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 47999998776431 11 3578999999999999999876666799999999865554443
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.54 E-value=2.3e-05 Score=62.63 Aligned_cols=53 Identities=28% Similarity=0.620 Sum_probs=24.1
Q ss_pred CcccccccccccccCccceEEe---cCCCcchHHHHHHHHhc----CC-----CCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKL---QCGHEFHLDCIGSAFNM----KG-----AMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~L---pCGH~FC~~CI~~wl~s----k~-----s~tCPiCR~~v~ 82 (411)
+.+|.||.+.+.+.++.+.+.- .|+..||..||.+||.. ++ ...||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4679999998663333333322 79999999999999974 11 125999999873
No 36
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=5.4e-05 Score=78.17 Aligned_cols=52 Identities=40% Similarity=0.766 Sum_probs=46.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
...|+||++.+.-+++..++.+.|||.|-..||++|+.++..++||.|..+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4689999999998888888999999999999999999866788999998765
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4e-05 Score=76.50 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=40.4
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
.+|+||+.....| +.|.|+|.||..||+--.. .+.++|++||.++..+.
T Consensus 8 ~eC~IC~nt~n~P-----v~l~C~HkFCyiCiKGsy~-ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCP-----VNLYCFHKFCYICIKGSYK-NDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcC-----ccccccchhhhhhhcchhh-cCCCCCceecCCCCcch
Confidence 4799999998888 9999999999999987553 24457999999995543
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=4.4e-05 Score=83.67 Aligned_cols=49 Identities=24% Similarity=0.654 Sum_probs=41.3
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
-+.|++|.....+. +++.|+|.||..||...+..++ +.||.|-+.|-.+
T Consensus 643 ~LkCs~Cn~R~Kd~-----vI~kC~H~FC~~Cvq~r~etRq-RKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA-----VITKCGHVFCEECVQTRYETRQ-RKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhhH-----HHHhcchHHHHHHHHHHHHHhc-CCCCCCCCCCCcc
Confidence 37799999887776 8999999999999999998655 4899999887443
No 39
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.41 E-value=0.00014 Score=59.96 Aligned_cols=49 Identities=29% Similarity=0.471 Sum_probs=36.5
Q ss_pred ccccccccccccc-----------CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSEN-----------GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP-----------~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..|+||..-+.+. ++.+++--.|.|.||..||.+|+.+++ .||+||+..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~--~CPld~q~w 80 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG--VCPLDRQTW 80 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC--CCCCCCcee
Confidence 4688887755432 234444457999999999999997654 799999986
No 40
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.35 E-value=0.0002 Score=53.55 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=33.7
Q ss_pred ccccccccccccCccceEEecCC-----CcchHHHHHHHHhcCCCCCCCCCc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCG-----HEFHLDCIGSAFNMKGAMQCPNCR 78 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCG-----H~FC~~CI~~wl~sk~s~tCPiCR 78 (411)
.|-||++. .++ ....+.+|. +.+|..|+.+|+..++...||+|+
T Consensus 1 ~CrIC~~~-~~~--~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDE--GDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCC--CCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999982 222 223577885 789999999999887778999995
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.33 E-value=5.2e-05 Score=60.08 Aligned_cols=44 Identities=34% Similarity=0.718 Sum_probs=23.5
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-+.|++|.+.+++| +.+..|.|.||..||..-+. ..||+|+.+.
T Consensus 7 lLrCs~C~~~l~~p----v~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEP----VCLGGCEHIFCSSCIRDCIG----SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-----B---SSS--B-TTTGGGGTT----TB-SSS--B-
T ss_pred hcCCcHHHHHhcCC----ceeccCccHHHHHHhHHhcC----CCCCCcCChH
Confidence 46899999999998 33568999999999987552 2599999886
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=6.4e-05 Score=57.95 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=38.6
Q ss_pred cccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+|.||+|.-.+. ++..|||. .|.+|-.+.++. ...+||+||++++
T Consensus 8 dECTICye~pvds-----VlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS-----VLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH-----HHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 5799999988776 88899996 899999887753 5569999999874
No 43
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.25 E-value=0.00011 Score=82.20 Aligned_cols=54 Identities=26% Similarity=0.549 Sum_probs=40.4
Q ss_pred CCCcccccccccccc-cCcc-ceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSE-NGIR-SRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~d-P~~~-~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+.-.+|+||..++.- ...- .-+...|+|.||..|+.+|+...+..+||.||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 344679999998762 1000 11344699999999999999988888999999654
No 44
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.21 E-value=0.00019 Score=55.35 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=31.3
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCC
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPN 76 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPi 76 (411)
..+.|+|.+..|++| ++...|+|.|.++.|.+|+...+...||+
T Consensus 10 ~~~~CPiT~~~~~~P----V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP----VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE----EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC----cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999999998 34469999999999999996666778998
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00021 Score=75.43 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=38.3
Q ss_pred CCccccccccccccc---Cccc---------eEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSEN---GIRS---------RAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP---~~~~---------~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.-.+|+||+..+..- .++. -..++|.|.||..|+++|.+. -++.||.||.+++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 346799999866421 1110 134599999999999999963 3468999999863
No 46
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00014 Score=59.44 Aligned_cols=50 Identities=32% Similarity=0.493 Sum_probs=37.2
Q ss_pred ccccccccccc-------cC-ccceEEecCCCcchHHHHHHHHhcCC-CCCCCCCcccc
Q 015207 32 ACSICLDLVSE-------NG-IRSRAKLQCGHEFHLDCIGSAFNMKG-AMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~d-------P~-~~~~v~LpCGH~FC~~CI~~wl~sk~-s~tCPiCR~~v 81 (411)
.|.||.-.|.. |+ +.+.+.-.|.|.||..||.+|+...+ ..+||+||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 79999887763 22 22333336999999999999998643 35899999975
No 47
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0002 Score=73.68 Aligned_cols=50 Identities=28% Similarity=0.572 Sum_probs=36.0
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCC-CCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGA-MQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s-~tCPiCR~~v 81 (411)
..|.||.+.+... +....+-.|||+||..|+.+|++.... +.||+|+-.+
T Consensus 5 A~C~Ic~d~~p~~-~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPND-HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccc-cccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4699996655432 222233459999999999999987554 6899999444
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.17 E-value=0.00016 Score=74.68 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=40.3
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
..|.||.|.-++- ++-+|||..|..|+..|-......+||.||..+++.
T Consensus 370 eLCKICaendKdv-----kIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDV-----KIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCc-----ccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 3599999875543 778999999999999998766567999999988553
No 49
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.15 E-value=0.00014 Score=77.31 Aligned_cols=48 Identities=23% Similarity=0.548 Sum_probs=41.1
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc---CCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM---KGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s---k~s~tCPiCR~~v 81 (411)
.+.+|.+|.+..++. +...|-|.||+.||.+++.. ....+||.|-..+
T Consensus 535 ~~~~C~lc~d~aed~-----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY-----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhh-----HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 356899999999888 88899999999999998864 3447999998876
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.08 E-value=0.00015 Score=79.70 Aligned_cols=46 Identities=26% Similarity=0.477 Sum_probs=33.0
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|+||+..+.+- .......|+|.||..||..|. +...+||+||..|
T Consensus 125 ~CP~Ci~s~~Dq--L~~~~k~c~H~FC~~Ci~sWs--R~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQ--LEESEKHTAHYFCEECVGSWS--RCAQTCPVDRGEF 170 (1134)
T ss_pred hhhHHHHHHHHH--hhccccccccccHHHHhhhhh--hhcccCchhhhhh
Confidence 455665554432 112345799999999999999 4556899999988
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00048 Score=68.20 Aligned_cols=51 Identities=22% Similarity=0.491 Sum_probs=41.6
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
...+.+|++|-+.-..| .++.+|+|.||..||..-+...-.++||.|-..+
T Consensus 236 ~t~~~~C~~Cg~~PtiP----~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP----HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred ccCCceeeccCCCCCCC----eeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 44567899999987777 4666799999999999877656678999997765
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00031 Score=73.11 Aligned_cols=47 Identities=28% Similarity=0.738 Sum_probs=41.4
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..++.|.||...+..| +.++|||.||..||.+.+. ....||.||..+
T Consensus 82 ~sef~c~vc~~~l~~p-----v~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP-----VVTPCGHSFCLECLDRSLD--QETECPLCRDEL 128 (398)
T ss_pred cchhhhhhhHhhcCCC-----ccccccccccHHHHHHHhc--cCCCCccccccc
Confidence 4678999999999998 8889999999999999774 456899999988
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.98 E-value=0.00027 Score=73.84 Aligned_cols=46 Identities=26% Similarity=0.751 Sum_probs=37.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
=.|+||||.+... -..++.+.|.|.||..|+..|.. .+||+||-..
T Consensus 176 PTCpVCLERMD~s-~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q 221 (493)
T KOG0804|consen 176 PTCPVCLERMDSS-TTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQ 221 (493)
T ss_pred CCcchhHhhcCcc-ccceeeeecccccchHHHhhccc----CcChhhhhhc
Confidence 3799999999753 33346778999999999999984 3799998764
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.88 E-value=0.00025 Score=71.65 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=40.6
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.-..|.+|..+|.++ ..+.-|-|+||..||..+++. ...||.|...+
T Consensus 14 ~~itC~LC~GYliDA----TTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~i 60 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA----TTITECLHTFCKSCIVKYLEE--SKYCPTCDIVI 60 (331)
T ss_pred cceehhhccceeecc----hhHHHHHHHHHHHHHHHHHHH--hccCCccceec
Confidence 457899999999887 466789999999999999975 66899998877
No 55
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.84 E-value=0.00054 Score=65.25 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=41.0
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWL 86 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l 86 (411)
+.|.||.+.++.| +.+.|||.||..|...-.. ..-.|-+|-+...+...
T Consensus 197 F~C~iCKkdy~sp-----vvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 197 FLCGICKKDYESP-----VVTECGHSFCSLCAIRKYQ--KGDECGVCGKATYGRFW 245 (259)
T ss_pred eeehhchhhccch-----hhhhcchhHHHHHHHHHhc--cCCcceecchhhcccee
Confidence 7899999999999 9999999999999988764 33479999887765543
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.56 E-value=0.00097 Score=69.16 Aligned_cols=47 Identities=28% Similarity=0.779 Sum_probs=40.7
Q ss_pred CCCcccccccccccccCccceEE-ecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAK-LQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~-LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..++.|+||..++.+| .. +.|||.||..|+..|+.. ...||.|+..+
T Consensus 19 ~~~l~C~~C~~vl~~p-----~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~ 66 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP-----VQTTTCGHRFCAGCLLESLSN--HQKCPVCRQEL 66 (391)
T ss_pred cccccCccccccccCC-----CCCCCCCCcccccccchhhcc--CcCCccccccc
Confidence 3457899999999998 66 599999999999999965 56899998876
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.20 E-value=0.0018 Score=67.04 Aligned_cols=53 Identities=30% Similarity=0.766 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+-++.|..|-+.+-.. +.....|+|.|.||..|+.++++..+..+||.||+..
T Consensus 363 e~~L~Cg~CGe~~Glk-~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLK-NERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCC-cccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3568899999987543 2334778999999999999999888888999999654
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0031 Score=63.14 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=40.6
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
+.|-||...|..| +++.|+|.||..|...-+. ....|.+|-+.+.+..
T Consensus 242 f~c~icr~~f~~p-----Vvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRP-----VVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccc-----hhhcCCceeehhhhccccc--cCCcceeccccccccc
Confidence 6799999999999 9999999999999988773 3347999998875443
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0045 Score=63.43 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=40.8
Q ss_pred CCCCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 24 DIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 24 d~e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+...+++..|+||...-... +..+|+|.-|..||.+.+. +.+.|=.|++.+.
T Consensus 416 ~lp~sEd~lCpICyA~pi~A-----vf~PC~H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINA-----VFAPCSHRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred CCCCcccccCcceecccchh-----hccCCCCchHHHHHHHHHh--cCCeeeEecceee
Confidence 34445677899999765454 8889999999999999884 4567999988763
No 60
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.84 E-value=0.0045 Score=62.26 Aligned_cols=43 Identities=42% Similarity=0.942 Sum_probs=35.8
Q ss_pred cccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 31 LACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
+.|+.|..++..| +.+ .|+|.||.+||...+.. ..+.||+|..
T Consensus 275 LkCplc~~Llrnp-----~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP-----MKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc-----ccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 7899999999988 444 78999999999987753 3468999955
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0084 Score=58.94 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWL 86 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l 86 (411)
.+..+.|+||.+.+.... ...++-+|||.||.+|+.+++ +..+.||+|-++++.+.+
T Consensus 218 ~s~ryiCpvtrd~LtNt~-~ca~Lr~sg~Vv~~ecvEkli--r~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 218 ASKRYICPVTRDTLTNTT-PCAVLRPSGHVVTKECVEKLI--RKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred hccceecccchhhhcCcc-ceEEeccCCcEeeHHHHHHhc--cccccccCCCCcCcccce
Confidence 345688999999998752 234677999999999999988 566799999998855443
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0019 Score=64.57 Aligned_cols=41 Identities=32% Similarity=0.678 Sum_probs=34.8
Q ss_pred CcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+..|+||++...+. +.|.|||. -|..|-+.+- .||+||+.+
T Consensus 300 ~~LC~ICmDaP~DC-----vfLeCGHmVtCt~CGkrm~------eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC-----VFLECGHMVTCTKCGKRMN------ECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcce-----EEeecCcEEeehhhccccc------cCchHHHHH
Confidence 56799999998888 99999995 6888886543 699999986
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.0083 Score=62.47 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=38.6
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc------CCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM------KGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s------k~s~tCPiCR~~ 80 (411)
-+.|.||++... |...++.++|+|.||+.|+..+++. ...+.||.|+..
T Consensus 184 lf~C~ICf~e~~--G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQM--GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhc--CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 477999999865 5566799999999999999999874 234678876544
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.45 E-value=0.011 Score=44.38 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=23.5
Q ss_pred cccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
|++|.+.+... +..+.--+|+..+|+.|+...++. ....||.||++.
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 78999988442 333344579999999999988753 345899999864
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.91 E-value=0.018 Score=59.04 Aligned_cols=50 Identities=24% Similarity=0.540 Sum_probs=39.0
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
++++..|.||.+.+.-. .+++|+|..|--|-.+...-...+.|++||..-
T Consensus 58 DEen~~C~ICA~~~TYs-----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYS-----ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEE-----EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 34557899999988765 889999999999987654333456899999864
No 66
>PHA03096 p28-like protein; Provisional
Probab=94.91 E-value=0.014 Score=58.40 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=33.9
Q ss_pred ccccccccccccc--Cccce-EEecCCCcchHHHHHHHHhcC-CCCCCCCCccc
Q 015207 31 LACSICLDLVSEN--GIRSR-AKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP--~~~~~-v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~ 80 (411)
..|.||++..... .++-. .+..|.|.||..||..|...+ ...+||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 5799999966532 12222 344799999999999998752 23456666554
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.81 E-value=0.0088 Score=69.82 Aligned_cols=53 Identities=26% Similarity=0.646 Sum_probs=39.7
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC--------CCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK--------GAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk--------~s~tCPiCR~~v 81 (411)
...+..|-||+..--. ..+.+.|.|+|.||+.|.+.-++.+ +-++||+|+.++
T Consensus 3483 QD~DDmCmICFTE~L~--AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALS--AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cccCceEEEEehhhhC--CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3345689999975432 2345899999999999998876541 346899999987
No 68
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.78 E-value=0.013 Score=64.97 Aligned_cols=48 Identities=29% Similarity=0.741 Sum_probs=40.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
..|.||++ ...+ ++..|+|.||..|+...++......||.||..+...
T Consensus 455 ~~c~ic~~-~~~~-----~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSF-----FITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccc-----eeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 5444 889999999999999998765555899999987433
No 69
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.023 Score=49.19 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=33.6
Q ss_pred Cccccccccccccc------------CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 30 GLACSICLDLVSEN------------GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP------------~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
...|+||..-+-+. .+..+.=-.|.|.||..||.+|+.+ ...||+|.+.
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt--r~vCPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT--RNVCPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh--cCcCCCcCcc
Confidence 35799998744321 1122222369999999999999954 4579999765
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.74 E-value=0.019 Score=58.73 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=36.3
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-|++|+|.+... ++-+.-.+||-..|..|+....+. -...||.||...
T Consensus 16 ~cplcie~mdit-dknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT-DKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc-cCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhc
Confidence 499999988764 334466789999999998765443 234799999987
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.021 Score=56.32 Aligned_cols=50 Identities=28% Similarity=0.626 Sum_probs=40.4
Q ss_pred ccccccccccccc-CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSEN-GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP-~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..|-||-+.|... +.+..+.|.|||.+|..|+...+.. ....||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 4799999998753 3455688999999999999987753 455789999985
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.026 Score=57.40 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+...|+||+.....| .++.--|-.||..||.+++. ....||+--.+.
T Consensus 298 ~~~~~CpvClk~r~Np----tvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP----TVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCC----ceEEecceEEeHHHHHHHHH--hcCCCCccCCcc
Confidence 3456899999998887 24444599999999999996 455799865554
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.45 E-value=0.044 Score=50.70 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCcccccccccccccCccceEEecCCC-----cchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGH-----EFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH-----~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
..+..|-||.+...+ ..-+|.- ..|.+|+.+|+..++...|+.|++.+..
T Consensus 6 ~~~~~CRIC~~~~~~------~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV------VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC------ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345689999987432 1235543 3499999999998888999999998743
No 74
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.035 Score=57.06 Aligned_cols=43 Identities=30% Similarity=0.564 Sum_probs=32.8
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
....|.||++...+. +.++|||.-| |..-.. ...+||+||+.+
T Consensus 304 ~p~lcVVcl~e~~~~-----~fvpcGh~cc--ct~cs~---~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA-----VFVPCGHVCC--CTLCSK---HLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce-----eeecCCcEEE--chHHHh---hCCCCchhHHHH
Confidence 346799999988776 8999999866 665432 233699999876
No 75
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.21 E-value=0.014 Score=58.79 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=40.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc---------------------CCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM---------------------KGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s---------------------k~s~tCPiCR~~v~~ 83 (411)
...|.|||--|.+. ..+.++.|.|.||..|+.++++. +..-.||+||..++.
T Consensus 115 ~gqCvICLygfa~~--~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASS--PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCC--CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35799999988754 44688899999999999888763 122369999998743
No 76
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.78 E-value=0.033 Score=54.41 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=36.5
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYA 88 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l~a 88 (411)
..|..|...-. .....++.|+|.||..|...-. ...|++||+.++...+..
T Consensus 4 VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPS---QDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCC---CCceeeeechhhhhhhhcccCC----ccccccccceeeeeeccc
Confidence 45777775433 3567899999999999997533 127999999985544433
No 77
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.047 Score=55.39 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=30.2
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..|--|--.+.. --++++|+|.||++|.+. ...+.||.|-..+
T Consensus 91 HfCd~Cd~PI~I----YGRmIPCkHvFCl~CAr~----~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAI----YGRMIPCKHVFCLECARS----DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCccee----eecccccchhhhhhhhhc----CccccCcCcccHH
Confidence 456666543322 126789999999999864 3356899998876
No 78
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.18 E-value=0.058 Score=56.87 Aligned_cols=35 Identities=23% Similarity=0.546 Sum_probs=31.1
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHh
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN 67 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~ 67 (411)
++++.|+||...|++| ++|+|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~ep-----iil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP-----IILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCc-----eEeecccHHHHHHHHhhcc
Confidence 3568899999999999 9999999999999987664
No 79
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.11 E-value=0.085 Score=38.51 Aligned_cols=40 Identities=30% Similarity=0.877 Sum_probs=23.7
Q ss_pred cccccccccccCccceEEe---cCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKL---QCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~L---pCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
|.+|.+++... ..- .|+=.+|..|+..++..+....||.|
T Consensus 1 C~~C~~iv~~G-----~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG-----QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS-----EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee-----ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 78899988765 332 48889999999999976555579988
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.07 E-value=0.098 Score=51.40 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
....+.|+|+...|.. ..+-+.+.+|||+|+..||.+.- ....||+|-+++.
T Consensus 110 ~~~~~~CPvt~~~~~~-~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNG-KHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCC-ceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccc
Confidence 3456899999999842 23445666999999999999862 3457999999884
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.96 E-value=0.11 Score=53.87 Aligned_cols=29 Identities=34% Similarity=0.841 Sum_probs=23.4
Q ss_pred CCCcchHHHHHHHHhc-----------CCCCCCCCCcccc
Q 015207 53 CGHEFHLDCIGSAFNM-----------KGAMQCPNCRRIE 81 (411)
Q Consensus 53 CGH~FC~~CI~~wl~s-----------k~s~tCPiCR~~v 81 (411)
|....|.+|+.+|+.. .++-.||+||+++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5666799999999965 2456899999987
No 82
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.04 Score=60.34 Aligned_cols=43 Identities=37% Similarity=0.809 Sum_probs=32.9
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
+.|.||+..|... ....+.|.|||+.|..|+....+ .+|| |+.
T Consensus 12 l~c~ic~n~f~~~-~~~Pvsl~cghtic~~c~~~lyn----~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQ-RLEPVSLQCGHTICGHCVQLLYN----ASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHH-hcCcccccccchHHHHHHHhHhh----ccCC-CCc
Confidence 6799998877653 33448899999999999988763 3688 654
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.75 E-value=0.12 Score=58.13 Aligned_cols=50 Identities=26% Similarity=0.615 Sum_probs=38.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc-----CCCCCCCCCcc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-----KGAMQCPNCRR 79 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-----k~s~tCPiCR~ 79 (411)
..++|.||.+.+... .-.+.-..|-|.||+.||+.|... .....||.|..
T Consensus 190 ~~yeCmIC~e~I~~t-~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRT-APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeecccc-CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 457899999988653 223455579999999999999865 24568999983
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.70 E-value=0.047 Score=42.23 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=33.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+..|-.|...-... .+++|||..|..|+.-+- -.-||.|-+++
T Consensus 7 ~~~~~~~~~~~~~~-----~~~pCgH~I~~~~f~~~r----YngCPfC~~~~ 49 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG-----TVLPCGHLICDNCFPGER----YNGCPFCGTPF 49 (55)
T ss_pred ceeEEEcccccccc-----ccccccceeeccccChhh----ccCCCCCCCcc
Confidence 45677777765555 899999999999987532 34699998886
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.54 E-value=0.067 Score=39.65 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=27.4
Q ss_pred cccccccccccCccceEEecCCC-----cchHHHHHHHHhcCCCCCCCCC
Q 015207 33 CSICLDLVSENGIRSRAKLQCGH-----EFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH-----~FC~~CI~~wl~sk~s~tCPiC 77 (411)
|-||++.-.+.. ..+.+|.- ..|..|+.+|+..++..+|++|
T Consensus 1 CrIC~~~~~~~~---~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE---PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS----EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC---ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998765431 25566643 4699999999988777789987
No 86
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.1 Score=52.38 Aligned_cols=48 Identities=29% Similarity=0.613 Sum_probs=36.4
Q ss_pred ccccccc-cccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLD-LVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe-~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|++|.. .+..|+ ....+-+|+|..|-.|+...+. .+...||.|-..+
T Consensus 2 ~Cp~CKt~~Y~np~-lk~~in~C~H~lCEsCvd~iF~-~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD-LKLMINECGHRLCESCVDRIFS-LGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCcc-ceeeeccccchHHHHHHHHHHh-cCCCCCCcccchh
Confidence 5999986 445552 2233349999999999999886 5667999998877
No 87
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.12 E-value=0.038 Score=54.30 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=37.0
Q ss_pred Cccccccccc-ccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCC--CCcccccc
Q 015207 30 GLACSICLDL-VSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCP--NCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~-f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCP--iCR~~v~~ 83 (411)
+..|+||... +-.|+ ..+.+- .|-|..|-.|+.+.|.. +..+|| -|-+.+..
T Consensus 10 d~~CPvCksDrYLnPd-ik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPD-IKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCC-eEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHHH
Confidence 4579999873 34452 222222 49999999999999974 556999 79887743
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.57 E-value=0.12 Score=51.66 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=38.3
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
.+..|+||.+.+... ...+..++|||..+..|+..... ...+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s-~~~~~~~~CgH~~h~~cf~e~~~--~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLS-FEDAGVLKCGHYMHSRCFEEMIC--EGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccc-cccCCccCcccchHHHHHHHHhc--cCCCCCcccc
Confidence 345699999977653 34457889999999999998874 3389999999
No 89
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.70 E-value=0.065 Score=59.27 Aligned_cols=47 Identities=38% Similarity=0.735 Sum_probs=40.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~v 81 (411)
.++|.||+..+.++ ..+.|.|.||..|+...+..+ +..+|++|+..+
T Consensus 21 ~lEc~ic~~~~~~p-----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP-----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc-----chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 36799999999988 899999999999998877653 367999999665
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.32 E-value=0.15 Score=57.37 Aligned_cols=42 Identities=26% Similarity=0.657 Sum_probs=35.0
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-.|.+|--.++.| .+-..|||.||..|+. .+...||.|+...
T Consensus 841 skCs~C~~~LdlP----~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP----FVHFLCGHSYHQHCLE-----DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc----eeeeecccHHHHHhhc-----cCcccCCccchhh
Confidence 4799999999887 6788999999999998 3445799998743
No 91
>PHA02862 5L protein; Provisional
Probab=90.27 E-value=0.23 Score=45.51 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=36.2
Q ss_pred cccccccccccccCccceEEecCCC-----cchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGH-----EFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH-----~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
..|=||++.-.+. .-+|.. ..|.+|+.+|++..+...|+.|+..+...
T Consensus 3 diCWIC~~~~~e~------~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER------NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC------cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 3699999875332 245543 46999999999887888999999988433
No 92
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.27 E-value=0.13 Score=46.36 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=26.3
Q ss_pred CcccccccccccccCccceEEecCC------CcchHHHHHHHH
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCG------HEFHLDCIGSAF 66 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCG------H~FC~~CI~~wl 66 (411)
..+|.||++.+.+ ...++.+.|+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~--~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN--NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc--CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4789999999876 1334555554 679999999995
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=0.28 Score=47.99 Aligned_cols=48 Identities=25% Similarity=0.600 Sum_probs=37.5
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcC------CCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK------GAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk------~s~tCPiCR~~v 81 (411)
-.|.+|...+... ..+.|-|-|.||.+|+.+|...- ...+||.|.+.+
T Consensus 51 pNC~LC~t~La~g---dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASG---DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccC---cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4699999887653 23788999999999999997541 235899998876
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.89 E-value=0.34 Score=44.93 Aligned_cols=53 Identities=25% Similarity=0.616 Sum_probs=35.4
Q ss_pred CcccccccccccccCccceEEec------------CCCcc-hHHHHHHHHhc----------------------------
Q 015207 30 GLACSICLDLVSENGIRSRAKLQ------------CGHEF-HLDCIGSAFNM---------------------------- 68 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~Lp------------CGH~F-C~~CI~~wl~s---------------------------- 68 (411)
+..|+||||.--+. ++|- |+-.| |..||.++.+.
T Consensus 2 d~~CpICme~PHNA-----VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 2 DVTCPICMEHPHNA-----VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CccCceeccCCCce-----EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 56899999987766 6664 33322 57788876642
Q ss_pred -CCCCCCCCCcccccccccc
Q 015207 69 -KGAMQCPNCRRIEKGQWLY 87 (411)
Q Consensus 69 -k~s~tCPiCR~~v~~n~l~ 87 (411)
.....||+||..|++-.+.
T Consensus 77 ~~~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 77 EQPELACPLCRGEVKGWTVV 96 (162)
T ss_pred ccccccCccccCceeceEEc
Confidence 0145799999998664443
No 95
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.55 E-value=0.28 Score=44.38 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=38.6
Q ss_pred CCcccccccccccccCccceEEe----cCCCcchHHHHHHHHhc-CCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL----QCGHEFHLDCIGSAFNM-KGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L----pCGH~FC~~CI~~wl~s-k~s~tCPiCR~~v~~ 83 (411)
.-.+|.||.|.-.+. ..| -||-..|..|-...|.. ...-.||.|++.++.
T Consensus 79 ~lYeCnIC~etS~ee-----~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEE-----RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchh-----hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 346899999987765 333 49999999999887754 345689999999854
No 96
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.52 E-value=0.22 Score=37.37 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=22.5
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHh---cCCCCCCCCCccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN---MKGAMQCPNCRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~---sk~s~tCPiCR~~ 80 (411)
+.|+|....+..| .+...|.|.-|.+ +..|++ ..+...||+|.++
T Consensus 3 L~CPls~~~i~~P----~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP----VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE----EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC----ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799999988877 5677899987754 233433 3556789999763
No 97
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.01 E-value=0.17 Score=41.91 Aligned_cols=34 Identities=26% Similarity=0.608 Sum_probs=27.1
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHH
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIG 63 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~ 63 (411)
...+..|++|...+.. ...+..+|||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN---SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC---ceEEEeCCCeEEeccccc
Confidence 3345679999998864 356788999999999985
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.32 E-value=0.63 Score=45.55 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=37.9
Q ss_pred CCcccccccccccccCccceEEecCCC-----cchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGH-----EFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH-----~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+..|-||.+........ ....+|.. ..|..|+..|+..++...|-.|...+
T Consensus 77 ~~~~cRIc~~~~~~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEeccccccccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 346899999976542111 24555543 35899999999888889999998876
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.4 Score=50.08 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=37.0
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc-CCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-KGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-k~s~tCPiCR~~ 80 (411)
.+.|+|=.+.-.+ +.+.+.|.|||..|++-|.+..+. .....||.|-..
T Consensus 334 vF~CPVlKeqtsd--eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSD--ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccC--CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 3679988776553 355699999999999999998753 123789999543
No 100
>PLN02189 cellulose synthase
Probab=88.07 E-value=0.69 Score=53.60 Aligned_cols=53 Identities=28% Similarity=0.513 Sum_probs=37.1
Q ss_pred CCccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
....|.||-+.+... ++.-+..-.|+-..|+.|.. +-.+.+...||.|++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 345899999987632 22222333588889999994 444457789999999874
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.83 E-value=0.19 Score=58.79 Aligned_cols=46 Identities=30% Similarity=0.721 Sum_probs=37.6
Q ss_pred CCccccccccccc-ccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVS-ENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~-dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.-..|.||++++. .. .+..|||.+|..|+..|+. ....||+|+...
T Consensus 1152 ~~~~c~ic~dil~~~~-----~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG-----GIAGCGHEPCCRCDELWLY--ASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcC-----CeeeechhHhhhHHHHHHH--HhccCcchhhhh
Confidence 3458999999998 44 7788999999999999995 455799998543
No 102
>PLN02436 cellulose synthase A
Probab=86.17 E-value=0.98 Score=52.55 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=36.6
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-|.+... ++--+..-.|+-..|+.|.. +-+..+...||.|++..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 45899999987432 22222333588889999994 444457789999999874
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.55 E-value=0.56 Score=47.50 Aligned_cols=44 Identities=30% Similarity=0.601 Sum_probs=35.0
Q ss_pred CCCcccccccccccccCccceEEecC--CCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQC--GHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpC--GH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+-++|+||.+.+..| +.+| ||.-|..|-.+.. ..||.||..+.
T Consensus 46 ~~lleCPvC~~~l~~P------i~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP------IFQCDNGHLACSSCRTKVS-----NKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc------ceecCCCcEehhhhhhhhc-----ccCCccccccc
Confidence 3457899999999876 5566 8999999987533 36999999883
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=0.49 Score=49.31 Aligned_cols=51 Identities=27% Similarity=0.627 Sum_probs=34.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc----CCCCCCCC--Ccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPN--CRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPi--CR~~v 81 (411)
..+|.||....... +.....+.|+|.||..|+.+.++. .....||. |...+
T Consensus 146 ~~~C~iC~~e~~~~-~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 146 KEECGICFVEDPEA-EDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRL 202 (384)
T ss_pred cccCccCccccccH-hhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccC
Confidence 46899999544332 233347789999999999999874 23456763 54444
No 105
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.65 E-value=0.54 Score=47.63 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=23.8
Q ss_pred CCCcchHHHHHHHHhc-----------CCCCCCCCCcccc
Q 015207 53 CGHEFHLDCIGSAFNM-----------KGAMQCPNCRRIE 81 (411)
Q Consensus 53 CGH~FC~~CI~~wl~s-----------k~s~tCPiCR~~v 81 (411)
|....|.+|+.+|+-. .++-+||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 5667899999999853 4567999999988
No 106
>PLN02400 cellulose synthase
Probab=83.91 E-value=1.4 Score=51.47 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
....|.||-|.+... ++--+..-.|+-..|+.|.. +=+..+...||.||+..+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 345899999987532 22223444788889999994 434457789999999875
No 107
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=0.78 Score=43.59 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=24.8
Q ss_pred ecCCCcchHHHHHHHHhc----CCC-----CCCCCCcccc
Q 015207 51 LQCGHEFHLDCIGSAFNM----KGA-----MQCPNCRRIE 81 (411)
Q Consensus 51 LpCGH~FC~~CI~~wl~s----k~s-----~tCPiCR~~v 81 (411)
..||..||.-|+..|++. +++ ..||.|.+++
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 479999999999999964 111 2699998886
No 108
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=83.01 E-value=1.8 Score=50.57 Aligned_cols=52 Identities=29% Similarity=0.486 Sum_probs=37.0
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-+.+... ++--+..-.|+-..|+.|.. +=+..+...||.|++..+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 35899999987532 22223344788889999994 444467789999998874
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.88 E-value=1.2 Score=50.23 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.2
Q ss_pred CCcccccccccccccCccceEEe---cCCCcchHHHHHHHHhc----CCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL---QCGHEFHLDCIGSAFNM----KGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L---pCGH~FC~~CI~~wl~s----k~s~tCPiCR~~v 81 (411)
+...|.||...+..++ ...-++ .|+|.||..||..|... +..-.|+.|...|
T Consensus 95 ~s~Ss~~C~~E~S~~~-ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDV-DSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcc-cccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4467888887777642 222334 49999999999999865 2334678888776
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.41 E-value=1.5 Score=49.70 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=39.5
Q ss_pred CcccccccccccccCccceEEecCCCc-----chHHHHHHHHhcCCCCCCCCCccccccccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHE-----FHLDCIGSAFNMKGAMQCPNCRRIEKGQWLYA 88 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~-----FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l~a 88 (411)
+..|-||...-... ....-||+.. .|.+|+.+|+.-.+.+.|-+|+.+++-..+++
T Consensus 12 ~~~CRICr~e~~~d---~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 12 KRSCRICRTEDIRD---DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred chhceeecCCCCCC---CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 36899999754322 1134466653 69999999998777789999999885444444
No 111
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.34 E-value=0.82 Score=52.00 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=28.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHh
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN 67 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~ 67 (411)
....|.+|...+.. ++..+.+|||.||.+||.+-..
T Consensus 816 p~d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhc---CcceeeeccchHHHHHHHHHHH
Confidence 45689999986643 2468889999999999987653
No 112
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=1.6 Score=46.14 Aligned_cols=50 Identities=26% Similarity=0.667 Sum_probs=36.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC----CC--CCCC--CCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK----GA--MQCP--NCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk----~s--~tCP--iCR~~v~ 82 (411)
....|.||.+.+.. ....+.|+|.||..|+..+++.+ .. ..|| .|++.+.
T Consensus 69 ~~~~c~ic~~~~~~----~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 69 GDVQCGICVESYDG----EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred ccccCCcccCCCcc----hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 34789999998864 23788999999999999998752 11 3565 3665553
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.04 E-value=1.4 Score=44.05 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=36.8
Q ss_pred CCCCcccccccccccccCccceEEecCC-----CcchHHHHHHHHhcCC------CCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCG-----HEFHLDCIGSAFNMKG------AMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCG-----H~FC~~CI~~wl~sk~------s~tCPiCR~~v 81 (411)
.+.|..|-||+..=+|..... -+-||. |-.|..|+..|+.+|+ ...||.|++..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~-WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAA-WVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhh-hcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 445678999999766542222 233453 3479999999998643 35799998865
No 114
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=78.00 E-value=2.9 Score=48.77 Aligned_cols=52 Identities=27% Similarity=0.451 Sum_probs=36.7
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-|.+... ++--+..-.|+-..|+.|.. +=...+...||.|++..+
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 45799999987542 22223334688889999994 444457789999998874
No 115
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=2.3 Score=47.40 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=47.4
Q ss_pred ccccccccccccCccceEEecCCC-cchHHHHHHHHhcCC----CCCCCCCcccc--ccccccccCcccCCCCCCcCCCC
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGH-EFHLDCIGSAFNMKG----AMQCPNCRRIE--KGQWLYANGSTRSLPELSMEDWI 104 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH-~FC~~CI~~wl~sk~----s~tCPiCR~~v--~~n~l~a~~~e~~~~ei~~dd~~ 104 (411)
.|+||-....-. ..-.||| ..|..|..+...... ...|++||..+ +.+-...... ....+-.+.++.
T Consensus 2 ~c~ic~~s~~~~-----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~-~t~~~~~~~~~~ 75 (669)
T KOG2231|consen 2 SCAICAFSPDFV-----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAV-GTFPEGRKCDFD 75 (669)
T ss_pred CcceeecCcccc-----ccccccccccchhhhhhhhhhcccccccccCcccccceeeeccccccccc-cccccccccccc
Confidence 599999877655 6668999 899999988765444 56789999866 2222222111 112223345555
Q ss_pred CCCcccCC
Q 015207 105 PDEDFYDL 112 (411)
Q Consensus 105 ~dEd~~d~ 112 (411)
++|+.+++
T Consensus 76 ~~e~~~~i 83 (669)
T KOG2231|consen 76 EHEDTCVI 83 (669)
T ss_pred cccceeee
Confidence 66666554
No 116
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=2.3 Score=43.02 Aligned_cols=45 Identities=29% Similarity=0.816 Sum_probs=33.8
Q ss_pred CCCCcccccccccccccCccceEEecC----CCcchHHHHHHHHhcC---CCCCCCC
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQC----GHEFHLDCIGSAFNMK---GAMQCPN 76 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpC----GH~FC~~CI~~wl~sk---~s~tCPi 76 (411)
...-+.|.+|.|.++|. -..+| .|.||.-|-++.++.+ +..-||.
T Consensus 265 ~~apLcCTLC~ERLEDT-----HFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDT-----HFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCCceeehhhhhhhccC-----ceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 34558899999999986 45555 7999999999988653 3445664
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.55 E-value=1.3 Score=33.60 Aligned_cols=43 Identities=21% Similarity=0.585 Sum_probs=23.7
Q ss_pred cccccccccccccCccceEEecC-CCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQC-GHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpC-GH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+.|.-|.-. +. .++.| .|..|+.|+..++ .....||+|.++++
T Consensus 3 ~nCKsCWf~--~k-----~Li~C~dHYLCl~CLt~ml--~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFA--NK-----GLIKCSDHYLCLNCLTLML--SRSDRCPICGKPLP 46 (50)
T ss_dssp ----SS-S----S-----SEEE-SS-EEEHHHHHHT---SSSSEETTTTEE--
T ss_pred ccChhhhhc--CC-----CeeeecchhHHHHHHHHHh--ccccCCCcccCcCc
Confidence 346666643 22 45567 6788999999988 44558999998874
No 118
>PLN02195 cellulose synthase A
Probab=75.18 E-value=2.9 Score=48.46 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=37.4
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-+.+... ++--+..-.|+-..|+.|.. +=+..+...||.|++..+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 35799999977542 22223444799999999994 444467789999999876
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.02 E-value=2.1 Score=42.62 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=29.6
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM 68 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s 68 (411)
..|.+||..+.+| ++.+=||.||++||.+++..
T Consensus 44 dcCsLtLqPc~dP-----vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP-----VITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccCC-----ccCCCCeeeeHHHHHHHHHH
Confidence 4589999999999 99999999999999998753
No 120
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=2.1 Score=41.22 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=27.6
Q ss_pred cccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCcccc
Q 015207 33 CSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
|-+|.+.-. .+.++||.|. +|..|-.. ...||+|+...
T Consensus 161 Cr~C~~~~~-----~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREA-----TVLLLPCRHLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCc-----eEEeecccceEeccccccc------CccCCCCcChh
Confidence 888876532 3588899995 78888753 34699998764
No 121
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.96 E-value=2.4 Score=31.88 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=25.6
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+.|+.|.+.+... .+..-|...-........||+|...+
T Consensus 2 ~f~CP~C~~~~~~~------------~L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES------------SLVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH------------HHHHHHHhHCcCCCCCccCCCchhhh
Confidence 47899999966543 23444555444434567899997654
No 122
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=2.4 Score=38.73 Aligned_cols=62 Identities=26% Similarity=0.562 Sum_probs=33.4
Q ss_pred CCCccccccccc-ccccCccceEEecCCCcchHHHHHHHHh--cCCCCCCCCCcccc-----ccccccccCc
Q 015207 28 SSGLACSICLDL-VSENGIRSRAKLQCGHEFHLDCIGSAFN--MKGAMQCPNCRRIE-----KGQWLYANGS 91 (411)
Q Consensus 28 s~el~C~ICLe~-f~dP~~~~~v~LpCGH~FC~~CI~~wl~--sk~s~tCPiCR~~v-----~~n~l~a~~~ 91 (411)
.++..|.||+.. |.+. ..-...=|.-.||..|-.+--. .+-...|-.|++.. .+.|++..++
T Consensus 63 ~ddatC~IC~KTKFADG--~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~sgs 132 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG--CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNSGS 132 (169)
T ss_pred CcCcchhhhhhcccccc--cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhcCC
Confidence 455789999984 4444 0001112333345555433211 12334799998866 6677776555
No 123
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=64.83 E-value=9.4 Score=31.74 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=21.5
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-+.+-.. ++.-+..-.|+-..|+.|..--.+ .+...||.|+...+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 35799999977532 222223347888999999975443 56779999997763
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=4.4 Score=42.37 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=31.9
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
...|++|.-.+......-.++-.|||.||..|...|.. ....|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~--~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT--HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh--CCccccCc
Confidence 46799998877654334444555999999999999984 33345543
No 125
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.55 E-value=12 Score=32.42 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCCcccccccccccccC---ccceEEecC---CCcchHHHHHHHHhc-------CCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENG---IRSRAKLQC---GHEFHLDCIGSAFNM-------KGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~---~~~~v~LpC---GH~FC~~CI~~wl~s-------k~s~tCPiCR~~v 81 (411)
+.+..|..|...-.+.. ........| .-.||..||..++.+ .....||.||..-
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 34567888877443220 000112455 667999999887753 3567899999865
No 126
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.48 E-value=5.9 Score=44.89 Aligned_cols=42 Identities=31% Similarity=0.559 Sum_probs=29.7
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCC
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPN 76 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPi 76 (411)
-+.|+||--.+.. ...+...|+|..|.+|..+|++... .||.
T Consensus 1028 ~~~C~~C~l~V~g---ss~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRG---SSNFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred eeeeeeEeeEeec---cchhhccccccccHHHHHHHHhcCC--cCCC
Confidence 3556666554432 1245678999999999999997644 6985
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=58.73 E-value=3.1e+02 Score=30.84 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=30.9
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHH--hcCCCCCCCCCccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAF--NMKGAMQCPNCRRIEK 82 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl--~sk~s~tCPiCR~~v~ 82 (411)
+.|+|+.-.+.-| .+-..|+|.-|.+-..-.- +.+....||+|.+...
T Consensus 307 L~CPl~~~Rm~~P----~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 307 LNCPLSKMRMSLP----ARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ecCCcccceeecC----CcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 6788888776655 2555677776665442111 1256789999988763
No 128
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.03 E-value=2 Score=42.40 Aligned_cols=50 Identities=30% Similarity=0.580 Sum_probs=37.6
Q ss_pred Cccccccccccccc-CccceEEec--------CCCcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 30 GLACSICLDLVSEN-GIRSRAKLQ--------CGHEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP-~~~~~v~Lp--------CGH~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
+..|.||...+... ......++. |+|+.|..|+...+...+ ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 46799999988732 233334555 999999999999876555 689999875
No 129
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=54.79 E-value=0.76 Score=40.02 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.+..|.+|...|.--+.....-..|+|.+|..|-.. ........|-+|.+.-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHHH
Confidence 345899999876543334567789999999999865 2224456799997754
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=54.07 E-value=12 Score=29.05 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=26.4
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
+..|.+|-+.|.+. ++.++-..||-.+|+.|+.+
T Consensus 5 ~~~C~~Cg~~~~~~-dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDG-DDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCC-CCEEECCCCCCcccHHHHhh
Confidence 35799999999653 34446668999999999865
No 131
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.03 E-value=9 Score=39.49 Aligned_cols=49 Identities=18% Similarity=0.486 Sum_probs=35.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~ 80 (411)
-+.|++-.+.-.+ +.+.+.+.|||..-.+-+.+..... ....||.|-..
T Consensus 336 ~FiCPVlKe~~t~--ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTD--ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcc--cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 3678887766553 3456999999999999998876532 35689999543
No 132
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.26 E-value=8.5 Score=37.59 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=33.6
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
..|.+|.+++-.. ++.-.|+=.++..|+..++.. ...||.|..-
T Consensus 182 k~Cn~Ch~LvIqg----~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG----IRCGSCNIQYHRGCIQTYLQR--RDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhhee----eccCcccchhhhHHHHHHhcc--cCcCCchhcc
Confidence 4799999987654 244568888999999999954 5589999543
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.75 E-value=15 Score=37.94 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=36.9
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
-.|+||-+..... +....-.+|++..|+.|+.... .....||.||+....+
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~--~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTIS--DGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhccc--ccCCCCCccCCccccC
Confidence 4699999977432 2233455899999999998876 4556899999776433
No 134
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=9.1 Score=43.14 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=39.1
Q ss_pred CCCcccccccccccccCccc-----eEEecCCCcc--------------------hHHHHHHHHhc------CCCCCCCC
Q 015207 28 SSGLACSICLDLVSENGIRS-----RAKLQCGHEF--------------------HLDCIGSAFNM------KGAMQCPN 76 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~-----~v~LpCGH~F--------------------C~~CI~~wl~s------k~s~tCPi 76 (411)
.+-..|.-|++.+.+|..+- +..+.||..| |..|..++-+- .+...||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34568999999999885442 2446799888 99999887643 34568999
Q ss_pred Ccccc
Q 015207 77 CRRIE 81 (411)
Q Consensus 77 CR~~v 81 (411)
|.-.+
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 96544
No 135
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.05 E-value=1.5 Score=45.99 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=39.9
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
....|+||.+.+... -.....+-|||.++..||.+|+.. ...||.|+..+..+
T Consensus 195 lv~sl~I~~~slK~~-y~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQN-YDKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHH-HHHHHHHhhcccchhhHHHHHHHH--HHHhHHHHhhhhhh
Confidence 345799999887643 112356789999999999999975 44799999988443
No 136
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=41.17 E-value=11 Score=41.55 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=28.0
Q ss_pred CCccccccccc-ccccC--ccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 29 SGLACSICLDL-VSENG--IRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 29 ~el~C~ICLe~-f~dP~--~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
..+.|.||... +.-|- +.......|++.||..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r-----~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR-----KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc-----cCCCCCchHH
Confidence 35678888431 11121 11234567999999999975 2345999943
No 138
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.01 E-value=32 Score=28.40 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=29.2
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|--|-..+.. +.....+-.=.++||.+|....+ .+ .||+|-..+
T Consensus 7 nCECCDrDLpp-~s~dA~ICtfEcTFCadCae~~l--~g--~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPP-DSTDARICTFECTFCADCAENRL--HG--LCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCC-CCCceeEEEEeeehhHhHHHHhh--cC--cCCCCCchh
Confidence 46666666543 22222444446789999998776 33 799997765
No 139
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.10 E-value=12 Score=39.57 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=0.0
Q ss_pred cccccccccccccC---------ccceEEecCCCcchHHHHHHHHhc----CCCCCCCCCcccccc
Q 015207 31 LACSICLDLVSENG---------IRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPNCRRIEKG 83 (411)
Q Consensus 31 l~C~ICLe~f~dP~---------~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPiCR~~v~~ 83 (411)
-+|++=|..+.-|. ..+.+-|.|||.+-.. .|-.. ...+.||+||+.-+.
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 46887776655432 2235678999987655 44322 136789999987533
No 140
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.72 E-value=5.3 Score=29.01 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=28.7
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhc----CCCCCCCCCcc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPNCRR 79 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPiCR~ 79 (411)
.|.||..... ....+.--.|+-.||..|+..-... .....|+.|+.
T Consensus 1 ~C~vC~~~~~--~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD--DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT--TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC--CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3888988322 2222333478889999999654431 23678888864
No 141
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.30 E-value=52 Score=25.84 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=29.6
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|-.|-..+...... ..+-.=..+||..|....+ .+ .||+|...+
T Consensus 7 nCE~C~~dLp~~s~~-A~ICSfECTFC~~C~e~~l--~~--~CPNCgGel 51 (57)
T PF06906_consen 7 NCECCDKDLPPDSPE-AYICSFECTFCADCAETML--NG--VCPNCGGEL 51 (57)
T ss_pred CccccCCCCCCCCCc-ceEEeEeCcccHHHHHHHh--cC--cCcCCCCcc
Confidence 577888777543211 2333334479999999987 33 699997665
No 142
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=35.08 E-value=20 Score=40.53 Aligned_cols=53 Identities=25% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCcccccccccccccCccc-----eEEecCCCcc--------------------hHHHHHHHHhc------CCCCCCCCC
Q 015207 29 SGLACSICLDLVSENGIRS-----RAKLQCGHEF--------------------HLDCIGSAFNM------KGAMQCPNC 77 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~-----~v~LpCGH~F--------------------C~~CI~~wl~s------k~s~tCPiC 77 (411)
+-..|.-|+.++.+|.++- +-.+.||-.| |.+|..++.+. .+...|+.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 4468999999998885442 2345788887 99999998643 234589999
Q ss_pred cccc
Q 015207 78 RRIE 81 (411)
Q Consensus 78 R~~v 81 (411)
--.+
T Consensus 147 gp~l 150 (711)
T TIGR00143 147 GPQL 150 (711)
T ss_pred CcEE
Confidence 6655
No 143
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=33.16 E-value=22 Score=30.19 Aligned_cols=35 Identities=29% Similarity=0.632 Sum_probs=27.5
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-.|-||...+..+ |+.||..|-.+ ++ .|.+|-+.+
T Consensus 45 ~~C~~CK~~v~q~----------g~~YCq~CAYk----kG--iCamCGKki 79 (90)
T PF10235_consen 45 SKCKICKTKVHQP----------GAKYCQTCAYK----KG--ICAMCGKKI 79 (90)
T ss_pred ccccccccccccC----------CCccChhhhcc----cC--cccccCCee
Confidence 4799999887664 67899999754 44 699998876
No 144
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.90 E-value=25 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.4
Q ss_pred cchHHHHHHHHhc
Q 015207 56 EFHLDCIGSAFNM 68 (411)
Q Consensus 56 ~FC~~CI~~wl~s 68 (411)
.||+.||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 145
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.61 E-value=39 Score=32.45 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=34.1
Q ss_pred CCCCCCCCccccccccccccCcccCCCCCCcCCCCCCCcccCCCCCCCCCcccccccccccccccccc
Q 015207 70 GAMQCPNCRRIEKGQWLYANGSTRSLPELSMEDWIPDEDFYDLSYSEMPFRVHWCPFGEFAQLGSSFE 137 (411)
Q Consensus 70 ~s~tCPiCR~~v~~n~l~a~~~e~~~~ei~~dd~~~dEd~~d~s~sEl~~~~~wCpf~~L~ql~S~f~ 137 (411)
...+||+|.+.+....+..... +.. ..+.|-- ..|. ++..+-+.+..||.-+...+...|.
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~-r~~-~~d~D~~----~~Y~-~vnP~~Y~V~vCP~CgyA~~~~~F~ 64 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKI-RVI-RRDSDFC----PRYK-GVNPLFYEVWVCPHCGYAAFEEDFE 64 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCc-eEe-eecCCCc----cccC-CCCCeeeeEEECCCCCCcccccccc
Confidence 3468999999996555444322 110 1111110 0111 2445567788999888777766665
No 146
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=63 Score=32.56 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
...+.|+|---.+..- -+-..+..|||.|-..-+.+. ....|++|.+.+
T Consensus 109 ~a~fiCPvtgleMng~-~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y 157 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGK-YRFCALRCCGCVFSERALKEI----KASVCHVCGAAY 157 (293)
T ss_pred cceeecccccceecce-EEEEEEeccceeccHHHHHHh----hhccccccCCcc
Confidence 3457899876666532 223366699999998877764 345899999887
No 147
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=44 Score=36.39 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=31.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
....|.||++.. .. +..+|. +..|+..|... ...||.|++.+.
T Consensus 478 ~~~~~~~~~~~~-~~-----~~~~~~---~~~~l~~~~~~--~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 478 PNDVCAICYQEM-SA-----RITPCS---HALCLRKWLYV--QEVCPLCHTYMK 520 (543)
T ss_pred ccCcchHHHHHH-Hh-----cccccc---chhHHHhhhhh--ccccCCCchhhh
Confidence 345799999987 33 666777 57788888743 347999988763
No 148
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.43 E-value=24 Score=40.29 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=30.0
Q ss_pred ccccccccccccC--ccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 32 ACSICLDLVSENG--IRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 32 ~C~ICLe~f~dP~--~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
.|..|.+.....+ -..++.+.|+|.||..|+.-.... + .|-.|
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~-~--~~~~~ 830 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR-N--ACNIE 830 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHh-c--ccChh
Confidence 7999999765322 134688899999999999765432 2 26555
No 149
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=27.01 E-value=47 Score=34.53 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=29.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
...|-.|.+..... ...+.-.|++.||.+|=.-.-+ .--.||-|..
T Consensus 330 ~~~Cf~C~~~~~~~--~~y~C~~Ck~~FCldCDv~iHe--sLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSS--GRYRCESCKNVFCLDCDVFIHE--SLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCC--CcEEchhccceeeccchHHHHh--hhhcCCCcCC
Confidence 34599996655432 2235567999999999764433 2236999963
No 150
>PRK01343 zinc-binding protein; Provisional
Probab=26.75 E-value=26 Score=27.50 Aligned_cols=35 Identities=11% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCCCCCCCccccccccccccCcccCCCCCCcCCCCCC
Q 015207 70 GAMQCPNCRRIEKGQWLYANGSTRSLPELSMEDWIPD 106 (411)
Q Consensus 70 ~s~tCPiCR~~v~~n~l~a~~~e~~~~ei~~dd~~~d 106 (411)
..+.||+|++.+... +.-.+.+.-..+++..|..+
T Consensus 8 p~~~CP~C~k~~~~~--~rPFCS~RC~~iDLg~W~~e 42 (57)
T PRK01343 8 PTRPCPECGKPSTRE--AYPFCSERCRDIDLNRWLSG 42 (57)
T ss_pred CCCcCCCCCCcCcCC--CCcccCHHHhhhhHHHHhCC
Confidence 356899999987422 22344455667888888775
No 151
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=26.38 E-value=19 Score=28.66 Aligned_cols=36 Identities=11% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCCCCCCccccc--cccccccCcccCCCCCCcCCCCCC
Q 015207 71 AMQCPNCRRIEK--GQWLYANGSTRSLPELSMEDWIPD 106 (411)
Q Consensus 71 s~tCPiCR~~v~--~n~l~a~~~e~~~~ei~~dd~~~d 106 (411)
...||+|++.+. ....+.-.+.+.-..+++..|..+
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e 43 (62)
T PRK00418 6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAE 43 (62)
T ss_pred cccCCCCCCcccccCCCCcCCcccHHHHhhhHHHHHcC
Confidence 357999999872 112232344455567888777765
No 152
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.63 E-value=31 Score=35.71 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=31.4
Q ss_pred cccccccccccccC---------ccceEEecCCCcchHHHHHHHHhc----CCCCCCCCCccccc
Q 015207 31 LACSICLDLVSENG---------IRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPNCRRIEK 82 (411)
Q Consensus 31 l~C~ICLe~f~dP~---------~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPiCR~~v~ 82 (411)
-.|++=+..+..|. ..+++-|.|||.--.. .|=.. .+...||+||..-.
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeeecc
Confidence 46998888776553 2246778999974332 34322 23568999987653
No 153
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.55 E-value=5.1 Score=32.56 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=21.4
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
++.|+.|...++..+ ++.+|..|-..+. ....||.|.+.+
T Consensus 1 e~~CP~C~~~L~~~~---------~~~~C~~C~~~~~---~~a~CPdC~~~L 40 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG---------GHYHCEACQKDYK---KEAFCPDCGQPL 40 (70)
T ss_dssp --B-SSS-SBEEEET---------TEEEETTT--EEE---EEEE-TTT-SB-
T ss_pred CCcCCCCCCccEEeC---------CEEECccccccce---ecccCCCcccHH
Confidence 357999999876431 5667777876543 234799999887
No 154
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=24.04 E-value=21 Score=40.95 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=32.2
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHH----hcCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAF----NMKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl----~sk~s~tCPiCR~~v 81 (411)
..|-.|...+.. ..++...|++.+|..|+..|. .......|+.|+...
T Consensus 230 ~mC~~C~~tlfn---~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 230 EMCDRCETTLFN---IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred hhhhhhcccccc---eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 357777765432 245777899999999999994 122344677776554
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=23.04 E-value=56 Score=32.07 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=18.7
Q ss_pred chHHHHHHHHhcCCCCCCCCCcccc
Q 015207 57 FHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 57 FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-|..|-.+.- ++.-.||+|+...
T Consensus 196 ~C~sC~qqIH--RNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIH--RNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHh--cCCCCCccccccc
Confidence 4899998876 5667899999876
No 156
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=22.92 E-value=70 Score=33.28 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=32.1
Q ss_pred Cccccccccccc--------------ccCccceEEecCCCcchHHHHHHHHhc-------CCCCCCCCCccccccc
Q 015207 30 GLACSICLDLVS--------------ENGIRSRAKLQCGHEFHLDCIGSAFNM-------KGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 30 el~C~ICLe~f~--------------dP~~~~~v~LpCGH~FC~~CI~~wl~s-------k~s~tCPiCR~~v~~n 84 (411)
+.+|++|+.+-. +++.-.-...+|||..-..-..-|.+. .-...||.|-+.+.+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 467999997522 111111133489997655656666543 1234799998887443
No 157
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.84 E-value=23 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred ccc--cccccccccC--ccceEEe-cCCCcchHHHHHHHH
Q 015207 32 ACS--ICLDLVSENG--IRSRAKL-QCGHEFHLDCIGSAF 66 (411)
Q Consensus 32 ~C~--ICLe~f~dP~--~~~~v~L-pCGH~FC~~CI~~wl 66 (411)
-|+ -|...+...+ ....+.- .|++.||..|...|-
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 477 6766554331 2223444 799999999988874
No 158
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=22.09 E-value=76 Score=30.21 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=28.9
Q ss_pred CCccccccccc-ccccCc--cceEEecCCCcchHHHHHHHHhcCCCCCCCCCcc
Q 015207 29 SGLACSICLDL-VSENGI--RSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRR 79 (411)
Q Consensus 29 ~el~C~ICLe~-f~dP~~--~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~ 79 (411)
.++.|.||.+. +--|-+ ....-..|+-.||..|+.+ ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 45789999852 222211 2234457999999999862 36999954
No 159
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.93 E-value=19 Score=35.82 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCcccccccccccccCccceEEec-----CCCcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQ-----CGHEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~Lp-----CGH~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
....|+||-..-.-. ++.. -.+.+|..|-.+|-- ....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s-----~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLS-----VLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEE-----EEE------EEEEEETTT--EEE----TTS-TTT---
T ss_pred cCCcCCCCCCcCceE-----EEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCC
Confidence 346899998754322 1111 134577788888863 34579999554
No 160
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=20.54 E-value=54 Score=33.13 Aligned_cols=51 Identities=20% Similarity=0.494 Sum_probs=32.4
Q ss_pred cccccccccccccCccce--EEecCCCcchHHHHHHHHhc-------CCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSR--AKLQCGHEFHLDCIGSAFNM-------KGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~--v~LpCGH~FC~~CI~~wl~s-------k~s~tCPiCR~~v 81 (411)
.+|-||.+.+.+.+.... ....|.-.+|..|+...+.. -....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999998843321100 11247778889999884322 1134799999976
No 162
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=28 Score=35.70 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=36.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
++..|-||...+..++ ..-.|.|.||..|...|.+.. ..|+.|+...
T Consensus 104 ~~~~~~~~~g~l~vpt----~~qg~w~qf~~~~p~~~~~~~--~~~~d~~~~~ 150 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT----RIQGCWHQFCYVCPKSNFAMG--NDCPDCRGKI 150 (324)
T ss_pred CccceeeeeeeEEecc----cccCceeeeeecCCchhhhhh--hccchhhcCc
Confidence 4467999999888772 233499999999999999653 4699998775
No 163
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.35 E-value=52 Score=37.00 Aligned_cols=52 Identities=31% Similarity=0.592 Sum_probs=33.9
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcC---CCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK---GAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk---~s~tCPiCR~~v 81 (411)
.+.|.||-..-...-.+....-.|+-.||..|+..|+... +...||-||...
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 4567777655443212233445789999999999998652 335788887644
No 164
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.34 E-value=88 Score=35.88 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=30.4
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCC--Cccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPN--CRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPi--CR~~ 80 (411)
..|.+|-..+..- -...-.|+|.-|.+|+++|+. ...-|+. |-..
T Consensus 780 ~~CtVC~~vi~G~---~~~c~~C~H~gH~sh~~sw~~--~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 780 AKCTVCDLVIRGV---DVWCQVCGHGGHDSHLKSWFF--KASPCAKSICPHL 826 (839)
T ss_pred cCceeecceeeee---EeecccccccccHHHHHHHHh--cCCCCccccCCcc
Confidence 4688888776531 112336999999999999995 3445665 5444
Done!