Query 015207
Match_columns 411
No_of_seqs 216 out of 1469
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yur_A Retinoblastoma-binding 99.3 4.7E-12 1.6E-16 98.9 6.0 50 27-81 12-62 (74)
2 2ect_A Ring finger protein 126 99.2 1.4E-11 4.9E-16 96.3 6.2 54 27-84 12-65 (78)
3 2djb_A Polycomb group ring fin 99.2 9.6E-12 3.3E-16 96.3 5.1 52 27-85 12-64 (72)
4 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.6E-16 93.8 5.7 51 27-83 12-62 (66)
5 3ztg_A E3 ubiquitin-protein li 99.2 8.4E-12 2.9E-16 100.5 4.8 50 27-81 10-60 (92)
6 2ysl_A Tripartite motif-contai 99.2 1.8E-11 6.1E-16 94.3 6.4 51 27-82 17-68 (73)
7 2ecw_A Tripartite motif-contai 99.2 3.7E-11 1.3E-15 94.2 8.1 52 27-83 16-71 (85)
8 2kiz_A E3 ubiquitin-protein li 99.2 1.3E-11 4.6E-16 94.3 5.0 52 27-82 11-62 (69)
9 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.8E-16 97.9 4.6 49 27-82 12-60 (81)
10 2d8t_A Dactylidin, ring finger 99.2 1.3E-11 4.4E-16 95.4 4.6 51 27-84 12-62 (71)
11 1t1h_A Gspef-atpub14, armadill 99.2 1.9E-11 6.5E-16 95.6 5.2 50 27-82 5-54 (78)
12 2ct2_A Tripartite motif protei 99.2 4.9E-11 1.7E-15 94.6 7.6 56 27-83 12-68 (88)
13 2egp_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 96.4 3.7 52 27-83 9-65 (79)
14 2ep4_A Ring finger protein 24; 99.2 2.3E-11 8E-16 94.2 4.9 51 28-82 13-63 (74)
15 2ecv_A Tripartite motif-contai 99.2 6.1E-11 2.1E-15 92.9 7.2 52 27-83 16-71 (85)
16 2ea6_A Ring finger protein 4; 99.1 2.5E-11 8.6E-16 91.9 4.4 53 28-82 13-67 (69)
17 1wgm_A Ubiquitin conjugation f 99.1 5.5E-11 1.9E-15 98.8 6.8 55 22-83 14-69 (98)
18 3ng2_A RNF4, snurf, ring finge 99.1 2.3E-11 7.9E-16 93.0 3.7 54 28-83 8-63 (71)
19 2ysj_A Tripartite motif-contai 99.1 7.4E-11 2.5E-15 88.8 5.9 46 27-77 17-63 (63)
20 1v87_A Deltex protein 2; ring- 99.1 5.3E-12 1.8E-16 105.5 -0.6 54 29-82 24-93 (114)
21 2kr4_A Ubiquitin conjugation f 99.1 5.1E-11 1.7E-15 96.2 4.9 50 27-83 11-60 (85)
22 2l0b_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 96.2 4.8 52 27-82 37-88 (91)
23 1x4j_A Ring finger protein 38; 99.1 3.4E-11 1.2E-15 93.8 2.9 50 28-81 21-70 (75)
24 2ecj_A Tripartite motif-contai 99.1 1.2E-10 4E-15 85.6 5.5 46 27-77 12-58 (58)
25 2kre_A Ubiquitin conjugation f 99.1 9.2E-11 3.1E-15 97.8 5.4 51 26-83 25-75 (100)
26 2ecm_A Ring finger and CHY zin 99.1 7.8E-11 2.7E-15 85.9 4.3 51 29-82 4-54 (55)
27 3lrq_A E3 ubiquitin-protein li 99.1 4.8E-11 1.6E-15 98.5 3.3 49 29-83 21-70 (100)
28 4ayc_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 103.6 3.2 47 29-82 52-98 (138)
29 2xeu_A Ring finger protein 4; 99.1 6.3E-11 2.2E-15 88.4 3.2 52 30-83 3-56 (64)
30 1g25_A CDK-activating kinase a 99.0 1.5E-10 5.2E-15 87.7 5.1 53 30-84 3-56 (65)
31 1iym_A EL5; ring-H2 finger, ub 99.0 8.3E-11 2.8E-15 85.9 3.5 49 29-81 4-53 (55)
32 3fl2_A E3 ubiquitin-protein li 99.0 9.5E-11 3.3E-15 99.7 3.2 48 29-82 51-98 (124)
33 3l11_A E3 ubiquitin-protein li 99.0 5.4E-11 1.9E-15 99.8 1.0 50 27-82 12-61 (115)
34 2ecl_A Ring-box protein 2; RNF 99.0 2.6E-10 8.8E-15 90.9 4.7 51 30-82 15-75 (81)
35 2ckl_A Polycomb group ring fin 99.0 1.9E-10 6.6E-15 95.6 4.0 49 28-83 13-62 (108)
36 2y43_A E3 ubiquitin-protein li 99.0 2.9E-10 1E-14 92.9 4.5 48 29-83 21-69 (99)
37 1chc_A Equine herpes virus-1 r 99.0 2.7E-10 9.2E-15 86.6 3.8 47 30-82 5-51 (68)
38 2c2l_A CHIP, carboxy terminus 98.9 4E-10 1.4E-14 105.9 4.8 53 25-83 203-255 (281)
39 2ecn_A Ring finger protein 141 98.9 2.7E-10 9.1E-15 87.2 2.3 47 28-82 13-59 (70)
40 1jm7_A BRCA1, breast cancer ty 98.9 5.7E-10 1.9E-14 92.3 4.5 49 30-83 21-70 (112)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 8.9E-10 3E-14 92.8 5.5 54 29-84 6-61 (133)
42 3hct_A TNF receptor-associated 98.9 6.3E-10 2.1E-14 94.1 4.5 51 27-83 15-65 (118)
43 1z6u_A NP95-like ring finger p 98.9 5.3E-10 1.8E-14 99.2 4.1 49 29-83 77-125 (150)
44 1e4u_A Transcriptional repress 98.9 1.4E-09 4.6E-14 87.0 6.0 54 28-83 9-62 (78)
45 2ckl_B Ubiquitin ligase protei 98.9 3.6E-10 1.2E-14 100.6 3.0 48 29-82 53-101 (165)
46 3dpl_R Ring-box protein 1; ubi 98.9 1.1E-09 3.8E-14 92.4 5.3 50 30-81 37-99 (106)
47 2yu4_A E3 SUMO-protein ligase 98.8 1.6E-09 5.4E-14 88.7 4.4 47 29-80 6-59 (94)
48 3knv_A TNF receptor-associated 98.8 5E-10 1.7E-14 98.5 0.9 49 27-81 28-76 (141)
49 1bor_A Transcription factor PM 98.8 7E-10 2.4E-14 82.5 1.1 45 28-82 4-48 (56)
50 1rmd_A RAG1; V(D)J recombinati 98.8 2.3E-09 8E-14 89.9 4.1 49 29-83 22-70 (116)
51 1jm7_B BARD1, BRCA1-associated 98.8 8.9E-10 3E-14 93.0 0.8 45 29-82 21-66 (117)
52 2f42_A STIP1 homology and U-bo 98.8 3.3E-09 1.1E-13 97.5 4.4 51 27-83 103-153 (179)
53 2d8s_A Cellular modulator of i 98.8 8.8E-09 3E-13 82.8 6.0 52 29-83 14-70 (80)
54 2ecg_A Baculoviral IAP repeat- 98.7 7.6E-10 2.6E-14 86.7 -1.5 44 29-83 24-68 (75)
55 4a0k_B E3 ubiquitin-protein li 98.7 1.9E-09 6.7E-14 92.8 0.5 50 30-81 48-110 (117)
56 3hcs_A TNF receptor-associated 98.7 7.8E-09 2.7E-13 92.2 4.2 52 27-84 15-66 (170)
57 3htk_C E3 SUMO-protein ligase 98.7 9.6E-09 3.3E-13 99.6 5.0 50 29-83 180-232 (267)
58 4ap4_A E3 ubiquitin ligase RNF 98.7 7.8E-09 2.7E-13 86.9 3.1 56 28-85 70-127 (133)
59 4ic3_A E3 ubiquitin-protein li 98.7 5E-09 1.7E-13 82.1 1.4 43 29-82 23-66 (74)
60 2vje_A E3 ubiquitin-protein li 98.6 9.5E-09 3.2E-13 78.6 2.3 48 28-82 6-56 (64)
61 2y1n_A E3 ubiquitin-protein li 98.6 1.7E-08 5.8E-13 102.6 4.3 48 30-83 332-379 (389)
62 2vje_B MDM4 protein; proto-onc 98.6 1.8E-08 6E-13 76.9 2.4 48 28-82 5-55 (63)
63 2ct0_A Non-SMC element 1 homol 98.5 8E-08 2.7E-12 76.5 5.3 48 30-81 15-62 (74)
64 2ea5_A Cell growth regulator w 98.5 7.8E-08 2.7E-12 74.6 3.8 45 27-82 12-57 (68)
65 1wim_A KIAA0161 protein; ring 98.4 7.1E-08 2.4E-12 78.3 2.6 50 29-80 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.3 1.6E-07 5.6E-12 71.6 2.2 49 31-86 4-53 (61)
67 2yho_A E3 ubiquitin-protein li 98.3 1.1E-07 3.9E-12 75.6 1.1 44 29-83 17-61 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 5.6E-07 1.9E-11 68.5 3.6 50 28-82 4-58 (60)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.8E-12 92.5 1.1 43 29-82 294-337 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.1 7.4E-07 2.5E-11 89.6 2.0 55 29-83 307-373 (381)
71 3vk6_A E3 ubiquitin-protein li 97.5 7.6E-05 2.6E-09 62.7 4.2 45 32-81 3-47 (101)
72 3nw0_A Non-structural maintena 97.0 0.00037 1.3E-08 66.3 3.8 48 30-81 180-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.0 0.022 7.5E-07 46.0 2.1 32 30-66 3-37 (101)
74 2ko5_A Ring finger protein Z; 92.0 0.077 2.6E-06 44.1 2.6 48 30-85 28-75 (99)
75 1weo_A Cellulose synthase, cat 88.1 1.7 5.8E-05 35.8 7.4 52 30-82 16-69 (93)
76 3m62_A Ubiquitin conjugation f 84.7 0.76 2.6E-05 51.6 4.9 52 25-83 886-938 (968)
77 2lri_C Autoimmune regulator; Z 84.0 0.68 2.3E-05 35.5 3.0 47 29-80 11-59 (66)
78 2cs3_A Protein C14ORF4, MY039 81.1 1.7 5.8E-05 35.3 4.3 47 28-77 13-64 (93)
79 3i2d_A E3 SUMO-protein ligase 79.9 1.5 5.2E-05 44.3 4.5 49 30-82 249-299 (371)
80 4fo9_A E3 SUMO-protein ligase 78.1 1.9 6.4E-05 43.5 4.5 50 30-83 215-266 (360)
81 2l43_A N-teminal domain from h 74.3 1.1 3.8E-05 36.1 1.4 54 28-81 23-76 (88)
82 1fp0_A KAP-1 corepressor; PHD 73.8 2.5 8.7E-05 34.4 3.5 58 18-80 13-72 (88)
83 2l5u_A Chromodomain-helicase-D 73.3 1.6 5.5E-05 32.6 2.0 49 27-80 8-58 (61)
84 1weu_A Inhibitor of growth fam 72.4 2.5 8.4E-05 34.6 3.1 49 24-81 30-86 (91)
85 2ku3_A Bromodomain-containing 68.5 1.2 4.1E-05 34.7 0.3 52 29-80 15-66 (71)
86 1wev_A Riken cDNA 1110020M19; 68.5 0.3 1E-05 39.4 -3.2 60 22-81 8-73 (88)
87 2k16_A Transcription initiatio 66.9 1.4 4.9E-05 33.9 0.5 51 29-81 17-69 (75)
88 2e6r_A Jumonji/ARID domain-con 66.3 0.99 3.4E-05 36.7 -0.5 50 29-80 15-66 (92)
89 1wen_A Inhibitor of growth fam 64.9 3.1 0.0001 32.2 2.1 50 23-81 9-66 (71)
90 2zet_C Melanophilin; complex, 64.8 0.29 9.8E-06 43.7 -4.4 62 29-91 67-133 (153)
91 3u5n_A E3 ubiquitin-protein li 57.6 1.8 6.3E-05 39.5 -0.5 47 30-81 7-55 (207)
92 2yt5_A Metal-response element- 56.8 1.3 4.4E-05 33.2 -1.4 53 29-81 5-62 (66)
93 1mm2_A MI2-beta; PHD, zinc fin 54.4 2.3 8E-05 31.7 -0.3 47 29-80 8-56 (61)
94 1f62_A Transcription factor WS 52.7 5.7 0.0002 28.1 1.6 46 32-79 2-49 (51)
95 2lbm_A Transcriptional regulat 51.1 12 0.00042 32.8 3.8 47 29-80 62-117 (142)
96 4g9i_A Hydrogenase maturation 50.6 8.8 0.0003 42.1 3.3 53 29-81 105-188 (772)
97 2lv9_A Histone-lysine N-methyl 49.5 4.4 0.00015 33.0 0.6 48 30-80 28-76 (98)
98 2ct7_A Ring finger protein 31; 47.6 6.1 0.00021 31.2 1.2 33 33-65 28-61 (86)
99 3o36_A Transcription intermedi 47.5 3.4 0.00012 36.9 -0.4 47 30-81 4-52 (184)
100 3ttc_A HYPF, transcriptional r 47.2 7.6 0.00026 41.9 2.2 53 29-81 16-99 (657)
101 2yql_A PHD finger protein 21A; 45.4 1.8 6.1E-05 31.7 -2.2 45 30-79 9-55 (56)
102 1we9_A PHD finger family prote 44.8 3.1 0.00011 30.9 -0.9 51 29-80 5-58 (64)
103 2dar_A PDZ and LIM domain prot 43.3 13 0.00045 28.8 2.5 38 30-82 25-62 (90)
104 3vth_A Hydrogenase maturation 42.4 13 0.00043 40.9 3.0 53 29-81 110-193 (761)
105 1wem_A Death associated transc 42.4 10 0.00036 29.1 1.7 48 30-80 16-70 (76)
106 3ql9_A Transcriptional regulat 40.7 23 0.00079 30.6 3.8 46 30-80 57-111 (129)
107 1z2q_A LM5-1; membrane protein 40.4 27 0.00093 27.4 3.9 34 30-64 21-54 (84)
108 1wew_A DNA-binding family prot 39.6 7.2 0.00025 30.3 0.4 53 25-80 11-72 (78)
109 1wep_A PHF8; structural genomi 39.4 22 0.00076 27.5 3.2 49 31-81 13-64 (79)
110 1zbd_B Rabphilin-3A; G protein 38.5 11 0.00037 32.6 1.4 66 29-94 54-126 (134)
111 1x64_A Alpha-actinin-2 associa 37.3 44 0.0015 25.7 4.7 38 30-82 25-62 (89)
112 2ro1_A Transcription intermedi 36.5 6.4 0.00022 35.6 -0.4 45 31-80 3-49 (189)
113 2d8v_A Zinc finger FYVE domain 35.6 16 0.00056 28.3 1.8 30 31-66 9-39 (67)
114 2csz_A Synaptotagmin-like prot 34.5 42 0.0014 26.6 4.0 48 29-78 24-71 (76)
115 1wil_A KIAA1045 protein; ring 34.2 39 0.0013 27.6 3.9 34 29-65 14-47 (89)
116 3mpx_A FYVE, rhogef and PH dom 34.2 8.5 0.00029 38.1 0.0 50 30-80 375-429 (434)
117 2vnf_A ING 4, P29ING4, inhibit 33.8 3.8 0.00013 30.6 -2.0 44 27-79 7-58 (60)
118 2ysm_A Myeloid/lymphoid or mix 33.8 9.1 0.00031 31.3 0.1 47 30-78 7-55 (111)
119 1wd2_A Ariadne-1 protein homol 33.5 3.3 0.00011 31.1 -2.4 37 31-67 7-46 (60)
120 3v43_A Histone acetyltransfera 32.8 48 0.0017 27.2 4.5 49 30-78 5-62 (112)
121 3v43_A Histone acetyltransfera 32.3 9.2 0.00032 31.6 -0.1 47 32-79 63-111 (112)
122 1xwh_A Autoimmune regulator; P 32.2 4 0.00014 30.8 -2.1 46 30-80 8-55 (66)
123 2ri7_A Nucleosome-remodeling f 31.8 8 0.00027 33.9 -0.6 52 28-81 6-60 (174)
124 2g6q_A Inhibitor of growth pro 30.2 4.9 0.00017 30.3 -2.0 47 27-80 8-60 (62)
125 1m3v_A FLIN4, fusion of the LI 30.1 39 0.0013 27.7 3.4 51 31-85 33-83 (122)
126 3t7l_A Zinc finger FYVE domain 30.1 23 0.00077 28.3 1.9 51 30-81 20-74 (90)
127 3lqh_A Histone-lysine N-methyl 30.0 20 0.00069 32.5 1.8 54 30-83 2-66 (183)
128 2jmi_A Protein YNG1, ING1 homo 29.4 6.4 0.00022 32.0 -1.5 50 28-81 24-77 (90)
129 1wfp_A Zinc finger (AN1-like) 28.5 84 0.0029 24.8 4.8 30 27-60 22-51 (74)
130 3mjh_B Early endosome antigen 28.3 11 0.00037 25.6 -0.3 15 29-43 4-18 (34)
131 2puy_A PHD finger protein 21A; 28.2 5.1 0.00017 29.6 -2.1 47 30-81 5-53 (60)
132 2yw8_A RUN and FYVE domain-con 28.2 27 0.00093 27.2 2.0 33 31-64 20-52 (82)
133 3shb_A E3 ubiquitin-protein li 27.3 8.5 0.00029 30.3 -1.1 28 52-79 46-76 (77)
134 1x4u_A Zinc finger, FYVE domai 27.2 28 0.00096 27.2 2.0 32 31-63 15-46 (84)
135 2jmo_A Parkin; IBR, E3 ligase, 26.8 26 0.00089 27.3 1.7 37 30-66 25-69 (80)
136 1joc_A EEA1, early endosomal a 26.8 27 0.00092 29.6 1.9 33 31-64 70-102 (125)
137 2pv0_B DNA (cytosine-5)-methyl 26.8 47 0.0016 33.6 3.9 46 30-80 93-148 (386)
138 3o70_A PHD finger protein 13; 26.3 8.4 0.00029 29.4 -1.2 49 28-79 17-66 (68)
139 2o35_A Hypothetical protein DU 25.9 24 0.00082 29.5 1.3 13 56-68 42-54 (105)
140 3fyb_A Protein of unknown func 25.6 24 0.00084 29.4 1.3 13 56-68 41-53 (104)
141 3asl_A E3 ubiquitin-protein li 25.4 13 0.00043 28.6 -0.4 29 52-80 38-69 (70)
142 1wee_A PHD finger family prote 24.9 10 0.00034 29.0 -1.1 50 29-80 15-66 (72)
143 3c6w_A P28ING5, inhibitor of g 24.2 7.2 0.00025 29.0 -1.9 43 28-79 7-57 (59)
144 1z60_A TFIIH basal transcripti 23.4 35 0.0012 25.6 1.7 43 31-77 16-58 (59)
145 1lv3_A Hypothetical protein YA 22.8 11 0.00036 29.4 -1.3 36 71-106 9-46 (68)
146 2e6s_A E3 ubiquitin-protein li 22.6 39 0.0013 26.4 1.9 47 31-79 27-76 (77)
147 2rsd_A E3 SUMO-protein ligase 21.9 7.1 0.00024 29.6 -2.5 48 28-79 8-64 (68)
148 3ask_A E3 ubiquitin-protein li 21.5 20 0.00067 33.9 -0.0 48 31-80 175-225 (226)
149 1wfk_A Zinc finger, FYVE domai 21.3 38 0.0013 26.9 1.7 50 31-81 10-64 (88)
150 4gne_A Histone-lysine N-methyl 21.3 38 0.0013 28.2 1.7 45 29-81 14-63 (107)
151 1wff_A Riken cDNA 2810002D23 p 20.8 1.3E+02 0.0043 24.3 4.6 26 30-60 25-52 (85)
152 1dvp_A HRS, hepatocyte growth 20.7 32 0.0011 31.3 1.3 34 30-64 161-194 (220)
153 1vfy_A Phosphatidylinositol-3- 20.5 46 0.0016 25.3 2.0 33 31-64 12-44 (73)
154 2rgt_A Fusion of LIM/homeobox 20.4 85 0.0029 27.0 3.9 45 29-82 32-76 (169)
155 3zyq_A Hepatocyte growth facto 20.0 36 0.0012 31.4 1.4 34 30-64 164-197 (226)
No 1
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=98.87 Aligned_cols=50 Identities=26% Similarity=0.710 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccCccceEEec-CCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQ-CGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~Lp-CGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..+++.|+||++.+.+| +.++ |||.||..||..|+...+...||+||+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA-----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCTTC-----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCCcCCChHHhCC-----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 44568999999999998 8899 99999999999999765556899999975
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.21 E-value=1.4e-11 Score=96.29 Aligned_cols=54 Identities=35% Similarity=0.679 Sum_probs=43.5
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
...+..|+||++.+.++ ...+.++|+|.||..||.+|+. ...+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALG--ESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTT--SCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCC--CCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCc
Confidence 34457899999999865 3456789999999999999995 346899999998543
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.6e-12 Score=96.32 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
.++++.|+||++.+.++ +.+ +|||.||..||.+|+.. ...||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA-----TTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSC-----EECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCc-----CEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCccc
Confidence 34568899999999988 666 99999999999999964 458999999985433
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=93.83 Aligned_cols=51 Identities=18% Similarity=0.526 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++.+.++ +.++|||.||..||.+|+. +....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP-----KQTECGHRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 34568899999999988 7789999999999999996 345689999998743
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=100.53 Aligned_cols=50 Identities=26% Similarity=0.710 Sum_probs=44.3
Q ss_pred CCCCcccccccccccccCccceEEec-CCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQ-CGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~Lp-CGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
..+++.|+||++.+.+| ++++ |||.||..||..|+...+...||+||+.+
T Consensus 10 ~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA-----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC-----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCc-----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 44568999999999998 8999 99999999999999765667999999986
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=94.26 Aligned_cols=51 Identities=31% Similarity=0.792 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc-CCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-KGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-k~s~tCPiCR~~v~ 82 (411)
..+++.|+||++.+.++ +.++|||.||..||..|+.. .....||+||+.+.
T Consensus 17 ~~~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP-----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSE-----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCe-----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 44567899999999988 88899999999999999963 24568999999874
No 7
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=3.7e-11 Score=94.17 Aligned_cols=52 Identities=31% Similarity=0.667 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC----CCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK----GAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk----~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++.+.++ ++++|||.||..||..|+... +...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP-----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSC-----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcc-----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34567899999999988 889999999999999999763 36789999999753
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=94.30 Aligned_cols=52 Identities=29% Similarity=0.640 Sum_probs=41.8
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...+..|+||++.+... ...+.++|+|.||..||.+|+... .+||+||+.+.
T Consensus 11 ~~~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG--EDVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSS--SCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCC--CcEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCcccc
Confidence 34457899999988643 335788999999999999999653 47999999873
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=97.91 Aligned_cols=49 Identities=20% Similarity=0.423 Sum_probs=42.8
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
....+.|+||++.+.++ ++++|||.||..||.+|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 44567899999999988 88999999999999999964 458999999974
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=95.39 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
..+++.|+||++.+.++ +.++|||.||..||.+|+.. ...||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP-----VSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSE-----EEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCC-----EEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCHh
Confidence 34567899999999888 88999999999999999953 46899999998543
No 11
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.9e-11 Score=95.58 Aligned_cols=50 Identities=18% Similarity=0.396 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
..+++.|+||++.+.+| ++++|||.||..||.+|+.. +..+||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~P-----v~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP-----VIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE-----EEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC-----EEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 34568999999999998 88999999999999999963 3568999999874
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.9e-11 Score=94.57 Aligned_cols=56 Identities=25% Similarity=0.620 Sum_probs=44.2
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++.+.+. +...+.++|||.||..||.+|+... ....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34567899999999872 2223888999999999999999753 34689999998743
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=96.41 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-----CCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-----GAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-----~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++.+.+| +.++|||.||..||.+|+... ....||+||+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP-----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSC-----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCe-----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34567899999999988 789999999999999999652 25689999999854
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=94.15 Aligned_cols=51 Identities=22% Similarity=0.495 Sum_probs=41.8
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
..+..|+||++.+.++ ...++++|+|.||..||.+|+..+ .+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPR--DELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSS--SCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCC--CcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCcccc
Confidence 3456899999999865 344677999999999999999653 48999999873
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.1e-11 Score=92.88 Aligned_cols=52 Identities=33% Similarity=0.783 Sum_probs=44.0
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc----CCCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++.+.++ +.++|||.||..||..|+.. .+...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP-----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSC-----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCc-----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34567899999999988 78899999999999999975 346789999999743
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=91.91 Aligned_cols=53 Identities=34% Similarity=0.671 Sum_probs=42.8
Q ss_pred CCCcccccccccccccC--ccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENG--IRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~--~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.++..|+||++.+.++. .+..++++|||.||..||.+|+.. ...||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34578999999998752 234478899999999999999964 458999999863
No 17
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=5.5e-11 Score=98.81 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=46.4
Q ss_pred CCCCCCCCCcccccccccccccCccceEEecCC-CcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 22 DDDIEPSSGLACSICLDLVSENGIRSRAKLQCG-HEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 22 ~ed~e~s~el~C~ICLe~f~dP~~~~~v~LpCG-H~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.+..+..+++.|+||+++|.+| ++++|| |+||+.||.+|+.. ..+||+||+.+..
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dP-----V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDP-----VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred hhhhcCcHhcCCcCccccccCC-----eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3333455689999999999999 999999 99999999999964 4689999998743
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=2.3e-11 Score=92.97 Aligned_cols=54 Identities=31% Similarity=0.656 Sum_probs=43.7
Q ss_pred CCCccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 28 SSGLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 28 s~el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+++..|+||++.+.++ .....+.++|||.||..||.+|+... .+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 4457899999999875 23445788999999999999999643 589999998743
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=7.4e-11 Score=88.77 Aligned_cols=46 Identities=35% Similarity=0.867 Sum_probs=39.6
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc-CCCCCCCCC
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-KGAMQCPNC 77 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-k~s~tCPiC 77 (411)
..+++.|+||++.+.+| ++++|||.||..||.+|++. .....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP-----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC-----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe-----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999999998 88999999999999999974 245689998
No 20
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=5.3e-12 Score=105.49 Aligned_cols=54 Identities=28% Similarity=0.651 Sum_probs=41.7
Q ss_pred CCcccccccccccccCc-------------cceEEecCCCcchHHHHHHHHhc---CCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGI-------------RSRAKLQCGHEFHLDCIGSAFNM---KGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~-------------~~~v~LpCGH~FC~~CI~~wl~s---k~s~tCPiCR~~v~ 82 (411)
.+..|+||++.|.++.. ...++++|+|.||..||.+|+.. +...+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 34589999999976420 12347899999999999999953 34568999999873
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=5.1e-11 Score=96.19 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
..+++.|+||++++.+| ++++|||+||+.||..|+.. ..+||+|++.+..
T Consensus 11 ~p~~~~CpI~~~~m~dP-----V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP-----VRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCC-----eECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 45679999999999999 99999999999999999974 4689999998743
No 22
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=6.2e-11 Score=96.25 Aligned_cols=52 Identities=25% Similarity=0.574 Sum_probs=42.1
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+.+..|+||++.+... ...+.++|+|.||..||.+|+. ...+||+||+.+.
T Consensus 37 ~~~~~~C~IC~~~~~~~--~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG--DVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTT--CEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCC--CcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCC
Confidence 34567899999998763 3347789999999999999995 4458999999863
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.4e-11 Score=93.75 Aligned_cols=50 Identities=28% Similarity=0.617 Sum_probs=41.8
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+++..|+||++.+..+ ...+.++|+|.||..||.+|+.. ..+||+||+.+
T Consensus 21 ~~~~~C~IC~~~~~~~--~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~ 70 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR--QLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADS 70 (75)
T ss_dssp SSCCEETTTTEECCBT--CEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCC
T ss_pred CCCCCCeECCcccCCC--CeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcC
Confidence 3456899999998765 34578899999999999999964 35899999886
No 24
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=85.64 Aligned_cols=46 Identities=30% Similarity=0.784 Sum_probs=39.2
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc-CCCCCCCCC
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-KGAMQCPNC 77 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-k~s~tCPiC 77 (411)
..+++.|+||++.+.++ ++++|||.||..||.+|+.. +....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP-----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc-----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999988 88999999999999999764 356789998
No 25
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.08 E-value=9.2e-11 Score=97.79 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 26 EPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 26 e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+..+++.|+||++++.+| ++++|||+||+.||..|+. ...+||+||+.+..
T Consensus 25 ~~p~~~~CpI~~~~m~dP-----V~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP-----VRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE-----EEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCC-----eECCCCCEEchHHHHHHHH--cCCCCCCCCCCCCh
Confidence 345679999999999999 9999999999999999996 35689999998743
No 26
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.07 E-value=7.8e-11 Score=85.89 Aligned_cols=51 Identities=25% Similarity=0.589 Sum_probs=41.8
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+..|+||++.+.+. +...+.++|+|.||..||.+|+... .+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 346899999998653 3345889999999999999999754 68999998863
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=4.8e-11 Score=98.52 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=42.6
Q ss_pred CCcccccccccccccCccceEE-ecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAK-LQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~-LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+++.|+||++.+.+| +. ++|||.||..||.+|+.... ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p-----~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-----RLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccCc-----cccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 457899999999988 77 99999999999999997543 589999999843
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.06 E-value=5e-11 Score=103.65 Aligned_cols=47 Identities=34% Similarity=0.743 Sum_probs=41.5
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++.|+||++.+.+| ++++|||.||..||..|+. ....||+||+.+.
T Consensus 52 ~~~~C~iC~~~~~~~-----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA-----VTLNCAHSFCSYCINEWMK--RKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE-----EEETTSCEEEHHHHHHHTT--TCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc-----eECCCCCCccHHHHHHHHH--cCCcCCCCCCcCC
Confidence 346899999999988 8999999999999999995 4568999999984
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.06 E-value=6.3e-11 Score=88.43 Aligned_cols=52 Identities=33% Similarity=0.667 Sum_probs=42.8
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
++.|+||++.+.++ ..+..+.++|||.||..||.+|+.. ...||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 56899999999875 2344578899999999999999965 4589999999744
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1.5e-10 Score=87.70 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=42.1
Q ss_pred Ccccccccc-cccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 30 GLACSICLD-LVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 30 el~C~ICLe-~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
++.|+||++ .+.++ ....+.++|||.||..||.+|+.. +...||+||+.+..+
T Consensus 3 ~~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 468999999 88876 222356899999999999999864 456899999998543
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.05 E-value=8.3e-11 Score=85.90 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=39.4
Q ss_pred CCcccccccccccccCccceEEec-CCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQ-CGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~Lp-CGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
++..|+||++.+.+. ...+.++ |+|.||..||.+|+. ...+||+||+.+
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDG--EEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTT--SCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCS
T ss_pred CCCcCccCCccccCC--CceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEe
Confidence 346899999999763 2236665 999999999999995 356899999875
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.02 E-value=9.5e-11 Score=99.69 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=42.2
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++.|+||++.+.+| +.++|||.||..||..|+.. +...||+||+.+.
T Consensus 51 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRP-----ITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcCc-----EEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCC
Confidence 457899999999998 88999999999999999973 4458999999874
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.00 E-value=5.4e-11 Score=99.79 Aligned_cols=50 Identities=30% Similarity=0.703 Sum_probs=43.2
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
..+++.|+||++.+.+| +.++|||.||..||..|+.. +...||+||+.+.
T Consensus 12 ~~~~~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEP-----VTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSC-----EECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCce-----eEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 34568899999999998 88999999999999999953 3568999999874
No 34
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.6e-10 Score=90.92 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=39.2
Q ss_pred Cccccccccccccc----------CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN----------GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP----------~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+..|+||++.+.++ ++..+++++|+|.||..||.+|+.. ..+||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 45699999988652 2333455569999999999999954 458999999874
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=1.9e-10 Score=95.56 Aligned_cols=49 Identities=22% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCcccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.+++.|+||++.+.+| +.+ +|||.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA-----TTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCc-----CEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence 3567899999999988 776 99999999999999954 4689999998743
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=92.91 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=41.4
Q ss_pred CCcccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+++.|+||++.+.+| +.+ +|||.||..||..|+. ....||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-----MIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc-----CEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 457899999999988 776 8999999999999995 34689999998743
No 37
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.97 E-value=2.7e-10 Score=86.61 Aligned_cols=47 Identities=30% Similarity=0.559 Sum_probs=40.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+..|+||++.+.++ .+.++|||.||..||.+|+.. ..+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~----~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNY----SMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSC----EEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCC----cEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 45799999998764 378899999999999999964 358999999874
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=4e-10 Score=105.87 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=45.0
Q ss_pred CCCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 25 IEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 25 ~e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.+....+.|+||++++.+| ++++|||+||+.||..|+...+ .+||+||+++..
T Consensus 203 ~~~~~~~~c~i~~~~~~dP-----v~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREP-----CITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSE-----EECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCG
T ss_pred CCCCcccCCcCcCCHhcCC-----eECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCch
Confidence 3445678999999999999 9999999999999999997543 359999999843
No 39
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=87.25 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.9
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.++..|+||++.+.+ +.++|+|.||..||.+|+. ....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD------LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC------cccCCCCcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 345789999998764 7889999999999999995 5668999999873
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=5.7e-10 Score=92.34 Aligned_cols=49 Identities=37% Similarity=0.719 Sum_probs=42.0
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcC-CCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK-GAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk-~s~tCPiCR~~v~~ 83 (411)
.+.|+||++.+.++ +.++|||.||..||..|+... +...||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP-----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC-----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe-----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46899999999988 789999999999999999753 34589999998743
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=8.9e-10 Score=92.76 Aligned_cols=54 Identities=31% Similarity=0.685 Sum_probs=44.0
Q ss_pred CCccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 29 SGLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 29 ~el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
+++.|+||++.+.++ +.+..+.++|||.||..||.+|+. ...+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCccc
Confidence 457899999999875 234458899999999999999995 445899999998543
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=6.3e-10 Score=94.10 Aligned_cols=51 Identities=31% Similarity=0.580 Sum_probs=43.6
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.++++.|+||++.+.+| +.++|||.||..||..|+.... ..||+||+.+..
T Consensus 15 ~~~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCe-----EECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 44568999999999988 8899999999999999997533 389999998844
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=5.3e-10 Score=99.21 Aligned_cols=49 Identities=27% Similarity=0.643 Sum_probs=42.4
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+++.|+||++.+.+| ++++|||.||..||..|+.. ....||+||+.+..
T Consensus 77 ~~~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP-----VTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCC-----EEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 346899999999998 88999999999999999974 44589999999743
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=1.4e-09 Score=87.00 Aligned_cols=54 Identities=17% Similarity=0.346 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
++++.|+||++.+... +.....++|||.||..||..++.. ....||.||+.+..
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3467899999988532 111222359999999999998853 45689999999843
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=3.6e-10 Score=100.56 Aligned_cols=48 Identities=40% Similarity=0.859 Sum_probs=41.3
Q ss_pred CCcccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.++.|+||++.+.++ +.+ +|||.||..||..|+.. +...||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT-----MTTKECLHRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc-----CEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 457899999999988 666 99999999999999973 3568999999873
No 46
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.90 E-value=1.1e-09 Score=92.42 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=40.8
Q ss_pred Cccccccccccccc-------------CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSEN-------------GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP-------------~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+..|+||++.|.++ ++..++.++|+|.||..||.+|+. ...+||+||+.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCcc
Confidence 46799999998754 123467789999999999999995 456899999986
No 47
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=88.74 Aligned_cols=47 Identities=28% Similarity=0.642 Sum_probs=40.7
Q ss_pred CCcccccccccccccCccceEEec-CCCcchHHHHHHHHhcC----CCCCCCC--Cccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQ-CGHEFHLDCIGSAFNMK----GAMQCPN--CRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~Lp-CGH~FC~~CI~~wl~sk----~s~tCPi--CR~~ 80 (411)
.++.|+||+++|.+| ++++ |||+||+.||..|+... +..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~~dP-----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE-----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC-----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 468899999999999 8885 99999999999999753 3468999 9866
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=5e-10 Score=98.52 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=42.7
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.++++.|+||++.+.+| +.++|||.||..||.+|+.. +...||+||+.+
T Consensus 28 l~~~~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP-----FQAQCGHRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc-----EECCCCCccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 45678999999999998 88999999999999999963 335899999975
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=7e-10 Score=82.49 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=38.5
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+++.|+||++.+.+| ++++|||.||..||..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP-----KLLPCLHTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC-----SCSTTSCCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe-----EEcCCCCcccHHHHccC-----CCCCCcCCcEee
Confidence 3457899999999998 88999999999999763 357999999873
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=2.3e-09 Score=89.90 Aligned_cols=49 Identities=24% Similarity=0.585 Sum_probs=42.6
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
+++.|+||++.+.+| +.++|||.||..||.+|+... ...||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADP-----VETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCc-----EEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 457899999999988 889999999999999999753 4589999999743
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=8.9e-10 Score=93.04 Aligned_cols=45 Identities=29% Similarity=0.638 Sum_probs=40.4
Q ss_pred CCcccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++.|+||++.+.+| +.+ +|||.||..||..|+. ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~p-----v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-----VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC-----BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc-----cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 568899999999998 888 9999999999999984 57999999873
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.77 E-value=3.3e-09 Score=97.54 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
...++.|+||+++|.+| ++++|||+||+.||..|+...+. +||+|++.+..
T Consensus 103 ip~~f~CPI~~elm~DP-----V~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREP-----CITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCC-----eECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 44678999999999999 99999999999999999975443 79999998743
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=8.8e-09 Score=82.79 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCcccccccccccccCccceEEecCC-----CcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCG-----HEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCG-----H~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
++..|.||++.+.+. .. .+++|+ |.||..||.+|+..++..+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~--~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDE--SP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSS--SC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCC--Ce-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346899999988642 22 568996 99999999999987666799999998743
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=7.6e-10 Score=86.73 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=37.4
Q ss_pred CCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
++..|.||++.+.++ +.++|||. ||..|+... ..||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~~~-----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB-----CCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE-----EEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 457899999999888 88999999 999999642 479999998743
No 55
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.70 E-value=1.9e-09 Score=92.76 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=0.4
Q ss_pred Cccccccccccccc-------------CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSEN-------------GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP-------------~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+..|+||++.|.++ ++..++.++|+|.||..||.+|+.. ..+||+||+.+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 45899999999763 1223455699999999999999954 56899999986
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=7.8e-09 Score=92.20 Aligned_cols=52 Identities=31% Similarity=0.573 Sum_probs=44.3
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQ 84 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n 84 (411)
.++++.|+||++.+.+| +.++|||+||..||.+|+..+. ..||+||+.+..+
T Consensus 15 ~~~~~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc-----EECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcchh
Confidence 45678999999999998 8899999999999999996533 3899999998543
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.69 E-value=9.6e-09 Score=99.59 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=43.2
Q ss_pred CCcccccccccccccCccceEE-ecCCCcchHHHHHHHHhcCCCCCCCC--Ccccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAK-LQCGHEFHLDCIGSAFNMKGAMQCPN--CRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~-LpCGH~FC~~CI~~wl~sk~s~tCPi--CR~~v~~ 83 (411)
.++.|+||++.|.+| +. +.|||.||+.||.+|+...+...||+ |++.+..
T Consensus 180 ~el~CPIcl~~f~DP-----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP-----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE-----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC-----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 568999999999999 76 49999999999999997555568999 9998743
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.66 E-value=7.8e-09 Score=86.92 Aligned_cols=56 Identities=32% Similarity=0.649 Sum_probs=44.3
Q ss_pred CCCccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 28 SSGLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 28 s~el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
++...|+||++.+.++ ..+..+.++|||.||..||.+|+.. .+.||+||+.+..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhc
Confidence 4567899999998764 1233478899999999999999964 458999999985443
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=5e-09 Score=82.06 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=38.4
Q ss_pred CCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++.|.||++.+.++ +.++|||. ||..|+..| ..||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV------DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE-----EEETTCCBCCCHHHHTTC------SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE-----EEcCCCChhHHHHhhhcC------ccCCCcCcCcc
Confidence 457899999999888 89999999 999999887 47999999874
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.63 E-value=9.5e-09 Score=78.63 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=39.8
Q ss_pred CCCcccccccccccccCccceEEe--cCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL--QCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L--pCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++..|.||++...+. +.+ +|||. ||..|+..|+.. ...||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-----CIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE-----EEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE-----EEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 3456899999998776 666 99999 899999999853 457999999873
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.61 E-value=1.7e-08 Score=102.63 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=41.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
...|+||++.+.++ +.++|||.||..||..|+.. ....||+||+.+..
T Consensus 332 ~~~C~ICle~~~~p-----v~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV-----KIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE-----EEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe-----EEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 36899999999888 89999999999999999963 34589999999844
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=1.8e-08 Score=76.89 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=39.6
Q ss_pred CCCcccccccccccccCccceEEe--cCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL--QCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L--pCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+.+..|.||++...++ +++ +|||. ||..|+..|.+. ...||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-----NIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-----EEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-----EEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 3456899999988776 666 99998 999999999853 358999999873
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=8e-08 Score=76.52 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=38.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
...|+||.+++... . ....|+|.||..||.+||+.....+||+||+..
T Consensus 15 i~~C~IC~~~i~~g-~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 15 VKICNICHSLLIQG-Q---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SCBCSSSCCBCSSS-E---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCcCcchhhHcccC-C---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 35799999999753 2 333899999999999999765557999999775
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=7.8e-08 Score=74.62 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=37.8
Q ss_pred CCCCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+++..|.||++...+. ++++|||. ||..|+.. ...||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW-----VLLPCRHTCLCDGCVKY------FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCCC-----EETTTTBCCSCTTHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCCE-----EEECCCChhhhHHHHhc------CCCCCCCCcchh
Confidence 33456899999998877 99999999 99999984 247999999874
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=7.1e-08 Score=78.32 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=38.7
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcC------CCCCCCC--Cccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMK------GAMQCPN--CRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk------~s~tCPi--CR~~ 80 (411)
..+.|+||++.+..+ ....+++|||.||..||..+++.+ ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE--QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG--GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc--cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 357899999998765 222334799999999999998742 2358999 9988
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.32 E-value=1.6e-07 Score=71.59 Aligned_cols=49 Identities=8% Similarity=-0.005 Sum_probs=42.1
Q ss_pred cccccccccccccCccceEEe-cCCCcchHHHHHHHHhcCCCCCCCCCccccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQWL 86 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~l 86 (411)
+.|+||++.+.+| +++ +|||+|++.||.+|+... .+||++++++....+
T Consensus 4 ~~CpIs~~~m~dP-----V~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP-----VLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE-----EEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC-----EEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChhhc
Confidence 6899999999999 888 999999999999999753 369999999854433
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.31 E-value=1.1e-07 Score=75.64 Aligned_cols=44 Identities=23% Similarity=0.580 Sum_probs=37.8
Q ss_pred CCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
++..|.||++.+.++ +.++|||. ||..|+..| ..||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINS-----TFCPCGHTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCE-----EEETTCBCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcE-----EEECCCCHHHHHHHHHhc------CcCCCCCchhhC
Confidence 346899999998887 99999999 999999865 279999999843
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=5.6e-07 Score=68.53 Aligned_cols=50 Identities=18% Similarity=0.463 Sum_probs=38.9
Q ss_pred CCCcccccccccccccCccceEEecCC--C---cchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCG--H---EFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCG--H---~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
+++..|.||++...++ .+++|. + .||..||.+|+..++..+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~-----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE-----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC-----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc-----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456899999874433 467865 4 899999999998766789999998863
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.6e-07 Score=92.52 Aligned_cols=43 Identities=33% Similarity=0.706 Sum_probs=38.6
Q ss_pred CCcccccccccccccCccceEEecCCCc-chHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHE-FHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~-FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
++..|+||++.+.++ +.++|||. ||..|+..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~~-----v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV-----VFIPCGHLVVCQECAPSL------RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE-----EEETTCCEEECTTTGGGC------SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce-----EEcCCCChhHhHHHHhcC------CcCCCCCCCcc
Confidence 467899999999988 99999999 999999877 47999999874
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.10 E-value=7.4e-07 Score=89.56 Aligned_cols=55 Identities=24% Similarity=0.447 Sum_probs=40.3
Q ss_pred CCcccccccccccccCccceE---EecCCCcchHHHHHHHHhcCC---------CCCCCCCcccccc
Q 015207 29 SGLACSICLDLVSENGIRSRA---KLQCGHEFHLDCIGSAFNMKG---------AMQCPNCRRIEKG 83 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v---~LpCGH~FC~~CI~~wl~sk~---------s~tCPiCR~~v~~ 83 (411)
...+|+||++.+.+.++.+.+ .+.|+|.||..||.+|++... ...||.||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346899999998763322222 358999999999999997521 1479999998743
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.48 E-value=7.6e-05 Score=62.73 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=36.3
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
.|.+|.-.+..= .++++|+|.||.+|+..|... +.++||.|+.++
T Consensus 3 fC~~C~~Pi~iy----gRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVY----GRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEE----EEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred ecCccCCCeEEE----eeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence 588888766532 388999999999999998753 456899999987
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.01 E-value=0.00037 Score=66.31 Aligned_cols=48 Identities=27% Similarity=0.675 Sum_probs=38.5
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
-..|.||.+++... .....|++.||..|+..|++..+...||.|++..
T Consensus 180 i~~C~iC~~iv~~g----~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSC----EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCC----cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 45799999998754 1233499999999999999766667999998764
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.99 E-value=0.022 Score=46.05 Aligned_cols=32 Identities=16% Similarity=0.528 Sum_probs=25.6
Q ss_pred Cccccccccc-ccccCccceEE--ecCCCcchHHHHHHHH
Q 015207 30 GLACSICLDL-VSENGIRSRAK--LQCGHEFHLDCIGSAF 66 (411)
Q Consensus 30 el~C~ICLe~-f~dP~~~~~v~--LpCGH~FC~~CI~~wl 66 (411)
++.|.||++. +.++ +. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~~a-----v~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDA-----VKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBC-----CEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCc-----eEECCcCChHHhHHHCHHHh
Confidence 4789999975 4454 44 8999999999999843
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.03 E-value=0.077 Score=44.15 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
-+.|..|.-..+ . .+.-..|.+|+.|+..++ .....||+|++++....
T Consensus 28 ~~nCKsCWf~~k-~-----LV~C~dHYLCl~CLtlmL--~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENK-G-----LVECNNHYLCLNCLTLLL--SVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCS-S-----EEECSSCEEEHHHHHHTC--SSSSEETTTTEECCCCS
T ss_pred cccChhhccccC-C-----eeeecchhhHHHHHHHHH--hhccCCcccCCcCCcce
Confidence 478999997654 2 344458999999999888 45568999999985443
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.05 E-value=1.7 Score=35.80 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=37.2
Q ss_pred Cccccccccccccc--CccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSEN--GIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP--~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|.||-+.+-.. ++.-+..-.|+-..|+.|+.--.. .+...||.|++.++
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 35899999976432 222223347898999999976554 56779999998874
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.66 E-value=0.76 Score=51.62 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccccccCccceEEecCC-CcchHHHHHHHHhcCCCCCCCCCcccccc
Q 015207 25 IEPSSGLACSICLDLVSENGIRSRAKLQCG-HEFHLDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 25 ~e~s~el~C~ICLe~f~dP~~~~~v~LpCG-H~FC~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.+..+++.|+|-++++.+| ++++.| ++|-+.+|.+|+.. ..+||.-|+++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DP-----VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP-----VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL 938 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred cCCcHHhCCcchhhHHhCC-----eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc
Confidence 3455789999999999999 999998 59999999999964 4589999998743
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.02 E-value=0.68 Score=35.55 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=32.8
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
.+..|.||.+. + ..+.--.|...||..|+...+.. ++...|+.|+..
T Consensus 11 ~~~~C~vC~~~----~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999753 1 12233379999999999877654 456789999754
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.14 E-value=1.7 Score=35.30 Aligned_cols=47 Identities=23% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCCcccccccccccccCccceEEe--cCCCcchHHHHHHHHhc---CCCCCCCCC
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL--QCGHEFHLDCIGSAFNM---KGAMQCPNC 77 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L--pCGH~FC~~CI~~wl~s---k~s~tCPiC 77 (411)
...+.|.+|.+.+++. ..+.- .=.|.||.-|-+..++. ....-||.-
T Consensus 13 ~a~l~CtlC~erLEdt---HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT---HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSST---TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccC---ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3457899999999875 12222 13799999999998865 234567653
No 79
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.87 E-value=1.5 Score=44.28 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=36.9
Q ss_pred CcccccccccccccCccceEEecCCCcchHH--HHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLD--CIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~--CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.+.|+|-...+..| .+...|.|.-|.+ -+..+........||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~P----vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP----SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE----EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc----CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 37899988888877 5677899996644 3444444567889999999873
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=78.05 E-value=1.9 Score=43.46 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=37.1
Q ss_pred CcccccccccccccCccceEEecCCCcch--HHHHHHHHhcCCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFH--LDCIGSAFNMKGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC--~~CI~~wl~sk~s~tCPiCR~~v~~ 83 (411)
.+.|+|-...+..| .+...|.|.-| +.-+..+...+....||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P----~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP----CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSE----EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccC----CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 36799998888877 56778999955 4444444445678899999998743
No 81
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.32 E-value=1.1 Score=36.11 Aligned_cols=54 Identities=26% Similarity=0.490 Sum_probs=34.2
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v 81 (411)
+.+..|.||.+.-....+..+.--.|.-.||..|+..-..-.+...|+.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345689999975321111111222688899999997543335677899997654
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.76 E-value=2.5 Score=34.37 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 18 DGHDDDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 18 ~~e~~ed~e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
+....+....+.+..|.||.+.- ..+.--.|.-.||..|+..-+.. ++...||.|+..
T Consensus 13 ~~~~~~~~~d~n~~~C~vC~~~g-----~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 13 DIIDEFGTLDDSATICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCCCCSSSSSSSCCSSSCSSS-----CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccccccccCCCCCcCcCcCCCC-----CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 33334444455567899999641 11122368888999999765543 456789999643
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.33 E-value=1.6 Score=32.64 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=32.7
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
...+..|.||.+. + ..+.--.|.-.||..|+..-+.. ++...||.|++.
T Consensus 8 ~~~~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3445689999863 1 11122368889999999874432 466789999653
No 84
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.36 E-value=2.5 Score=34.58 Aligned_cols=49 Identities=24% Similarity=0.775 Sum_probs=30.8
Q ss_pred CCCCCCCcccccccccccccCccceEEec-----CC-CcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 24 DIEPSSGLACSICLDLVSENGIRSRAKLQ-----CG-HEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 24 d~e~s~el~C~ICLe~f~dP~~~~~v~Lp-----CG-H~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
.++..+...| ||..... . .++. |. .-||..|+. +.. .+...||.|+...
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g-----~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-S-----CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcCCCCCcEE-ECCCCCC-C-----CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3334455678 9988642 1 2333 54 469999997 332 3567899997653
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.47 E-value=1.2 Score=34.65 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=32.6
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
.+..|.||.+.-.+..+..+.--.|.-.||..|+..-..-++...|+.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3457999987532211222222378889999999753333566789998653
No 86
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.45 E-value=0.3 Score=39.41 Aligned_cols=60 Identities=25% Similarity=0.521 Sum_probs=37.9
Q ss_pred CCCCCCCCCcccccccccccccCccceEEecCCCcchHHHHHHHHh------cCCCCCCCCCcccc
Q 015207 22 DDDIEPSSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN------MKGAMQCPNCRRIE 81 (411)
Q Consensus 22 ~ed~e~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~------sk~s~tCPiCR~~v 81 (411)
.+++..+.+..|.||...-..+....+.--.|...||..|+..-+. ..+...|+.|+...
T Consensus 8 ~dd~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 8 ADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCCCHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred cccccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 3444445567899999763321112112226889999999976443 25678899997654
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.93 E-value=1.4 Score=33.87 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=33.0
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
....|.||...... +..+.--.|.--||..|+..-... .+...||.|+..+
T Consensus 17 ~~~~C~~C~~~~~~--~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDG--SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSS--CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCC--CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34679999876432 122222268888999999754332 2467899998765
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.27 E-value=0.99 Score=36.66 Aligned_cols=50 Identities=18% Similarity=0.515 Sum_probs=31.9
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
++..|.||...-... ..+.--.|...||..|+..-+.. ++...||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~--~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD--KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG--GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC--CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345799999764321 11222268888999999743332 456679999654
No 89
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=64.87 E-value=3.1 Score=32.24 Aligned_cols=50 Identities=24% Similarity=0.740 Sum_probs=31.5
Q ss_pred CCCCCCCCcccccccccccccCccceEEec-----CC-CcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 23 DDIEPSSGLACSICLDLVSENGIRSRAKLQ-----CG-HEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 23 ed~e~s~el~C~ICLe~f~dP~~~~~v~Lp-----CG-H~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
+.++..+...| ||..... . .++. |. .-||..|+. +.. .+...||.|+...
T Consensus 9 ~~~d~~~~~~C-~C~~~~~-g-----~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSC-S-----SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cccCCCCCCEE-ECCCCCC-C-----CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 33344455678 8987532 1 2333 55 579999997 332 3567899997653
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.84 E-value=0.29 Score=43.67 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=45.2
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccc-----ccccccccCc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIE-----KGQWLYANGS 91 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v-----~~n~l~a~~~ 91 (411)
.+..|.+|...|.--+........|.+.+|..|-. |........|-+|++.- .+.|++....
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~rel~~kSGeWf~~~~~ 133 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLARVVKIGSLEWYYQHVR 133 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHHHHHHhccHHHHHHHH
Confidence 35689999998754444556778999999999984 44445667899998753 6667776544
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=57.57 E-value=1.8 Score=39.49 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=31.5
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
+..|.||.+. ++ .+..-.|...||..|+..-+.. .+...||.|+...
T Consensus 7 ~~~C~~C~~~----g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG----GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC----EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC----Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4579999843 11 1122268889999999765543 4567899998654
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.78 E-value=1.3 Score=33.19 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=33.9
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHh-----cCCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN-----MKGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~-----sk~s~tCPiCR~~v 81 (411)
.+..|.||...........+.--.|.-.||..|+..-+. ..+...|+.|+...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 346799999764332122223337888999999975321 34667899996653
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=54.40 E-value=2.3 Score=31.74 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=30.8
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
.+..|.||.+. + ..+.--.|...||..|+..-+.. .+...||.|+..
T Consensus 8 ~~~~C~vC~~~----g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC----C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34579999852 1 11122368889999999854433 356789999764
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.70 E-value=5.7 Score=28.14 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=29.3
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRR 79 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~ 79 (411)
.|.||.+.-... ..+.--.|...||..|+..-+.. ++...||.|+.
T Consensus 2 ~C~vC~~~~~~~--~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD--KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS--CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC--CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888653211 11222368889999999654432 35668999965
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.13 E-value=12 Score=32.81 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHh---------cCCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN---------MKGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~---------sk~s~tCPiCR~~ 80 (411)
.+..|.||.+--. .+.--.|--.||..||..-+. ..+...|+.|+..
T Consensus 62 ~~d~C~vC~~GG~-----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEGGN-----LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCCSS-----EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCCCc-----EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3467999986421 112226888999999996552 3567899999753
No 96
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.57 E-value=8.8 Score=42.09 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCcccccccccccccCccc-----eEEecCCCcc--------------------hHHHHHHHHhc------CCCCCCCCC
Q 015207 29 SGLACSICLDLVSENGIRS-----RAKLQCGHEF--------------------HLDCIGSAFNM------KGAMQCPNC 77 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~-----~v~LpCGH~F--------------------C~~CI~~wl~s------k~s~tCPiC 77 (411)
+-..|.-|+.++.+|.++- +-.+.||-.| |..|-.++-+- .+...||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 4568999999999886442 2446788888 99999998753 345689999
Q ss_pred cccc
Q 015207 78 RRIE 81 (411)
Q Consensus 78 R~~v 81 (411)
-=.+
T Consensus 185 GP~l 188 (772)
T 4g9i_A 185 GPSY 188 (772)
T ss_dssp SCCE
T ss_pred CceE
Confidence 6554
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.55 E-value=4.4 Score=33.02 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=29.2
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc-CCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM-KGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s-k~s~tCPiCR~~ 80 (411)
...| ||....... ..+.--.|.--||..|+..-... .....||.|+..
T Consensus 28 ~vrC-iC~~~~~~~--~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG--YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSS--CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCC--cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3567 887654332 11222368888999999653222 235789999743
No 98
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=47.59 E-value=6.1 Score=31.23 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=21.9
Q ss_pred cccccccccccCccceEEe-cCCCcchHHHHHHH
Q 015207 33 CSICLDLVSENGIRSRAKL-QCGHEFHLDCIGSA 65 (411)
Q Consensus 33 C~ICLe~f~dP~~~~~v~L-pCGH~FC~~CI~~w 65 (411)
|+-|-..+........+.- .|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8877775543222222344 59999999999888
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=47.47 E-value=3.4 Score=36.86 Aligned_cols=47 Identities=26% Similarity=0.537 Sum_probs=31.7
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
+..|.||.+. ++ .+..-.|.-.||..|+..-+.. .+...||.|+...
T Consensus 4 ~~~C~~C~~~----g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3469999843 21 1222368889999998765543 4567899998764
No 100
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=47.21 E-value=7.6 Score=41.89 Aligned_cols=53 Identities=23% Similarity=0.481 Sum_probs=39.2
Q ss_pred CCcccccccccccccCccc-----eEEecCCCcc--------------------hHHHHHHHHhc------CCCCCCCCC
Q 015207 29 SGLACSICLDLVSENGIRS-----RAKLQCGHEF--------------------HLDCIGSAFNM------KGAMQCPNC 77 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~-----~v~LpCGH~F--------------------C~~CI~~wl~s------k~s~tCPiC 77 (411)
+-..|.-|+.++.+|.++- +-.+.||-.| |..|..++-+- .+...||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 4468999999998885442 2446788887 99999998753 345689999
Q ss_pred cccc
Q 015207 78 RRIE 81 (411)
Q Consensus 78 R~~v 81 (411)
-=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 5443
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.40 E-value=1.8 Score=31.70 Aligned_cols=45 Identities=31% Similarity=0.739 Sum_probs=29.3
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRR 79 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~ 79 (411)
+..|.||.+. + ..+.--.|...||..|+..-+.. ++...||.|++
T Consensus 9 ~~~C~vC~~~----g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS----G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS----S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC----C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4579999874 1 11223368889999999754432 34567888854
No 102
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.75 E-value=3.1 Score=30.91 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhc---CCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM---KGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s---k~s~tCPiCR~~ 80 (411)
++..|+||.....+. ...+.--.|..-||..|+.--... .....|+.|+..
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 346799999876432 222223368888999998542211 246789999754
No 103
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.29 E-value=13 Score=28.82 Aligned_cols=38 Identities=16% Similarity=0.483 Sum_probs=27.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|..|.+.+... ++..-+..||..|+ .|-.|++.+.
T Consensus 25 ~~~C~~C~~~I~~~-----~v~a~~~~~H~~CF----------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGP-----FLVALGKSWHPEEF----------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSC-----EEEETTEEECTTTC----------BCSSSCCBCS
T ss_pred CCCCccCCCEecce-----EEEECCccccccCC----------ccCCCCCCCC
Confidence 45799999987543 45556777877665 5888988864
No 104
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=42.45 E-value=13 Score=40.85 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=38.7
Q ss_pred CCcccccccccccccCccc-----eEEecCCCcc--------------------hHHHHHHHHhc------CCCCCCCCC
Q 015207 29 SGLACSICLDLVSENGIRS-----RAKLQCGHEF--------------------HLDCIGSAFNM------KGAMQCPNC 77 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~-----~v~LpCGH~F--------------------C~~CI~~wl~s------k~s~tCPiC 77 (411)
+-..|.-|+.++.+|.++- +-.+.||-.| |..|..++-+- .+...||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 4468999999998885442 2446788766 99999998653 245689999
Q ss_pred cccc
Q 015207 78 RRIE 81 (411)
Q Consensus 78 R~~v 81 (411)
--.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 5544
No 105
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.40 E-value=10 Score=29.06 Aligned_cols=48 Identities=29% Similarity=0.527 Sum_probs=30.0
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHh-------cCCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN-------MKGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~-------sk~s~tCPiCR~~ 80 (411)
...| ||...... ...+.--.|.--||..|+.--.. ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~--~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNN--RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCS--SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCC--CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4668 89876542 12222236888899999942111 1356789999764
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.70 E-value=23 Score=30.59 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=30.4
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHH------h---cCCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAF------N---MKGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl------~---sk~s~tCPiCR~~ 80 (411)
+..|.||.+--+- +---.|-..||..||..-+ + ..+...|+.|+..
T Consensus 57 ~~~C~vC~dGG~L-----lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGNL-----ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSEE-----EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCee-----EecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3569999864211 1122688899999998742 1 2466899999654
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.44 E-value=27 Score=27.35 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=24.6
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
...|.+|...|..- .+.---..||..||..|...
T Consensus 21 ~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccc-hhcccccCCCcEEChHHhCC
Confidence 45799999988643 22224457999999999764
No 108
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.58 E-value=7.2 Score=30.35 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCCCCCcccccccccccccCccceEEe--cCCCcchHHHHHHHHhc-------CCCCCCCCCccc
Q 015207 25 IEPSSGLACSICLDLVSENGIRSRAKL--QCGHEFHLDCIGSAFNM-------KGAMQCPNCRRI 80 (411)
Q Consensus 25 ~e~s~el~C~ICLe~f~dP~~~~~v~L--pCGH~FC~~CI~~wl~s-------k~s~tCPiCR~~ 80 (411)
.+......| ||....... ..+.-- .|..-||..|+.---.. .....||.|+..
T Consensus 11 ~~~~~~~~C-iC~~~~~~g--~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETD--SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCS--CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cCCCCCEEe-ECCCcCCCC--CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 333455778 899873322 111222 58788999999532111 135789999764
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.39 E-value=22 Score=27.45 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=30.4
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHh---cCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN---MKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~---sk~s~tCPiCR~~v 81 (411)
..| ||.....+. ...+.--.|..-||..|+.--.. ......|+.|+...
T Consensus 13 ~~C-~C~~~~d~~-~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVN-HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSS-SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCC-CceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 457 898876421 22223336888899999953221 12567899998764
No 110
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.51 E-value=11 Score=32.64 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.7
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHh--cCCCCCCCCCcccc-----ccccccccCcccC
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN--MKGAMQCPNCRRIE-----KGQWLYANGSTRS 94 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~--sk~s~tCPiCR~~v-----~~n~l~a~~~e~~ 94 (411)
.+..|.+|...|.--+........|.|.+|..|-..... ......|-+|++.- .+.|++..+....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~~k~~ 126 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQV 126 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCCCCC
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcCcccc
Confidence 356899999988422234456778999999999864211 12356799998753 6778887665333
No 111
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.29 E-value=44 Score=25.68 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=27.1
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
...|..|.+.+... ++..-+..||..|+ .|-.|++.+.
T Consensus 25 ~~~C~~C~~~I~~~-----~~~a~~~~~H~~CF----------~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGA-----VVKARDKYRHPECF----------VCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSC-----CEESSSCEECTTTC----------CCSSSCCCTT
T ss_pred CCCcccCCCEeccc-----EEEECCceECccCC----------EecCCCCCCC
Confidence 35799999987643 44556777887764 5888988763
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=36.55 E-value=6.4 Score=35.61 Aligned_cols=45 Identities=27% Similarity=0.480 Sum_probs=30.5
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
..|.+|.+.- ..+..-.|.-.||..|+..-+.. .+...||.|+..
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCC-----ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4699998531 11233368889999999754432 466789999765
No 113
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=35.58 E-value=16 Score=28.34 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=23.5
Q ss_pred cccccccccccccCccceEEecC-CCcchHHHHHHHH
Q 015207 31 LACSICLDLVSENGIRSRAKLQC-GHEFHLDCIGSAF 66 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpC-GH~FC~~CI~~wl 66 (411)
--|.||.+... ++-+.| +-.||..|+.+.-
T Consensus 9 pWC~ICneDAt------lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNEDAT------LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSCCC------EEETTTTSEEECSSHHHHHT
T ss_pred CeeEEeCCCCe------EEecCCCCceehHHHHHHHc
Confidence 35999998743 367789 8899999998754
No 114
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.47 E-value=42 Score=26.63 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=30.6
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCR 78 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR 78 (411)
.+..|+.|.+.|---..+..+--.|.|..|.+|-..-. .....|-+|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~--~~~W~C~VC~ 71 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQES--NGTWRCKVCS 71 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECS--TTCEEEHHHH
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccCC--CCCEEEeeCc
Confidence 34689999998864334455667888888888764321 2334455553
No 115
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=34.19 E-value=39 Score=27.55 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHH
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSA 65 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~w 65 (411)
.+..|.||-..-... .....-|+-.||..|+.+.
T Consensus 14 ~D~~C~VC~~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccccc---eeccccccccccHhhcccc
Confidence 445899997543221 1122348899999999986
No 116
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.16 E-value=8.5 Score=38.06 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHh-----cCCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN-----MKGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~-----sk~s~tCPiCR~~ 80 (411)
...|.+|...|..- .+.--...||..||..|....+. .+..+.|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~-~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLT-LRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCc-chhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 35799999987632 22224557999999999976542 1234567777544
No 117
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=33.82 E-value=3.8 Score=30.57 Aligned_cols=44 Identities=27% Similarity=0.844 Sum_probs=26.8
Q ss_pred CCCCcccccccccccccCccceEEec-----CC-CcchHHHHHHHHhc--CCCCCCCCCcc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQ-----CG-HEFHLDCIGSAFNM--KGAMQCPNCRR 79 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~Lp-----CG-H~FC~~CI~~wl~s--k~s~tCPiCR~ 79 (411)
..+...| ||...-. . .++. |. .-||..|+. +.. .+...||.|++
T Consensus 7 ~~e~~~C-~C~~~~~-g-----~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-----CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3345667 8987532 2 3343 44 469999997 332 35678998864
No 118
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.77 E-value=9.1 Score=31.35 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=30.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCR 78 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR 78 (411)
+..|.||.+.-... ..+.--.|...||..|+...+.. .....|+.|+
T Consensus 7 ~~~C~~C~~~g~~~--~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGDLL--DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCCTT--TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCcCCCCCCCCc--CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45799998763321 11233479999999999765532 3456788775
No 119
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.47 E-value=3.3 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=24.6
Q ss_pred cccccccccccccCccceEEe-c--CCCcchHHHHHHHHh
Q 015207 31 LACSICLDLVSENGIRSRAKL-Q--CGHEFHLDCIGSAFN 67 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~L-p--CGH~FC~~CI~~wl~ 67 (411)
..|+-|.-.++..+...-++- . |++.||..|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 469999888776432222222 3 888888888887764
No 120
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.82 E-value=48 Score=27.16 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=30.0
Q ss_pred Cccccccccccccc----CccceEEecCCCcchHHHHHH---HH--hcCCCCCCCCCc
Q 015207 30 GLACSICLDLVSEN----GIRSRAKLQCGHEFHLDCIGS---AF--NMKGAMQCPNCR 78 (411)
Q Consensus 30 el~C~ICLe~f~dP----~~~~~v~LpCGH~FC~~CI~~---wl--~sk~s~tCPiCR 78 (411)
...|.+|+..-... .+..+.-..|+..||..||.. .. .......|+.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35799998753211 122233347999999999942 11 124567899886
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.33 E-value=9.2 Score=31.61 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=27.6
Q ss_pred ccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcc
Q 015207 32 ACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRR 79 (411)
Q Consensus 32 ~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~ 79 (411)
.|.||.+.-.+. +..+.--.|...||..|+..-+.. ++...|+.|+.
T Consensus 63 ~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCc-cceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 456666532221 111122268888999999754443 35578999975
No 122
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=32.23 E-value=4 Score=30.79 Aligned_cols=46 Identities=26% Similarity=0.647 Sum_probs=30.4
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~ 80 (411)
+..|.||.+. + ..+.--.|.-.||..|+..-+.. .+...||.|...
T Consensus 8 ~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG----G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC----S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCC----C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4579999863 1 11222368889999999754432 356689999654
No 123
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.80 E-value=8 Score=33.92 Aligned_cols=52 Identities=25% Similarity=0.507 Sum_probs=31.9
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHH---hcCCCCCCCCCcccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAF---NMKGAMQCPNCRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl---~sk~s~tCPiCR~~v 81 (411)
+....| ||.....+. ...+..-.|.--||..|+.--. .......||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~-~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDES-KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTT-SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCC-CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 345679 998765322 1122223688889999995321 124567899998653
No 124
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=30.23 E-value=4.9 Score=30.29 Aligned_cols=47 Identities=28% Similarity=0.746 Sum_probs=27.6
Q ss_pred CCCCcccccccccccccCccceEEe---c--CC-CcchHHHHHHHHhcCCCCCCCCCccc
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKL---Q--CG-HEFHLDCIGSAFNMKGAMQCPNCRRI 80 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~L---p--CG-H~FC~~CI~~wl~sk~s~tCPiCR~~ 80 (411)
..+...| ||.+... . .++ . |. .-||..|+.--....+...||.|+..
T Consensus 8 ~~e~~yC-~C~~~~~-g-----~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSY-G-----EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp --CCEET-TTTEECC-S-----EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCCcEE-ECCCCCC-C-----CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 3445677 9987532 2 233 3 44 67999999721111356789999653
No 125
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.14 E-value=39 Score=27.73 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=34.6
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCcccccccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEKGQW 85 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~~n~ 85 (411)
+.|..|...|.+.+ ......=+..||..|..+.+.. ...|-.|.+.+....
T Consensus 33 F~C~~C~~~L~~~~--~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIG--TSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSE--ECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccC--CeEEEECCeeecHHHHHHHcCC--CCccccCCCCcCchh
Confidence 67999988885210 0133455678999999988843 226999999885433
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.12 E-value=23 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=31.7
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc----CCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM----KGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s----k~s~tCPiCR~~v 81 (411)
...|.+|...|..- .+.---..||..||..|....+.. +..+.|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccch-hhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 35799999988642 222345589999999998654311 2234566664443
No 127
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.96 E-value=20 Score=32.49 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=33.8
Q ss_pred CcccccccccccccCc-c-ceEEecCCCcchHHHHHHH------Hhc---CCCCCCCCCcccccc
Q 015207 30 GLACSICLDLVSENGI-R-SRAKLQCGHEFHLDCIGSA------FNM---KGAMQCPNCRRIEKG 83 (411)
Q Consensus 30 el~C~ICLe~f~dP~~-~-~~v~LpCGH~FC~~CI~~w------l~s---k~s~tCPiCR~~v~~ 83 (411)
+..|+||...+.+... . -+..-.|..-||..|+.-- +.. .....||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 3469999998876421 1 1222368888999998421 110 125789999887643
No 128
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=29.38 E-value=6.4 Score=32.03 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCCcccccccccccccCccceEEecCC---CcchHHHHHHHHhcCCCCCCCC-Ccccc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCG---HEFHLDCIGSAFNMKGAMQCPN-CRRIE 81 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCG---H~FC~~CI~~wl~sk~s~tCPi-CR~~v 81 (411)
.+...| ||....... .+.--.|. --||..|+.--....+...||. |++..
T Consensus 24 ~~~~yC-iC~~~~~g~---MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGP---MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp CCSCCS-TTTCCCSSS---EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHH
T ss_pred CCCcEE-EeCCCCCCC---EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchh
Confidence 345678 998753211 11111333 5799999962111135678999 97543
No 129
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.47 E-value=84 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred CCCCcccccccccccccCccceEEecCCCcchHH
Q 015207 27 PSSGLACSICLDLVSENGIRSRAKLQCGHEFHLD 60 (411)
Q Consensus 27 ~s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~ 60 (411)
......|..|...+... ...-.|+..||..
T Consensus 22 k~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT----GFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTT----CEECTTSCEECTT
T ss_pred cccCccchhhcCccccc----ceEeccCCEeccc
Confidence 33456799998765432 1444799999864
No 130
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.28 E-value=11 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.729 Sum_probs=12.3
Q ss_pred CCccccccccccccc
Q 015207 29 SGLACSICLDLVSEN 43 (411)
Q Consensus 29 ~el~C~ICLe~f~dP 43 (411)
+++.|+||+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 458999999988765
No 131
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.22 E-value=5.1 Score=29.55 Aligned_cols=47 Identities=30% Similarity=0.680 Sum_probs=30.8
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
+..|.||.+. + ..+.--.|.-.||..|+..-+.. ++...||.|....
T Consensus 5 ~~~C~vC~~~----g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS----G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC----S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC----C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999863 1 11223368889999999854432 3566799996543
No 132
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.19 E-value=27 Score=27.25 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=23.8
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
..|.+|...|..- .+.---..||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCc-cccccCCCCCCEEChHHhCC
Confidence 4799999988642 22224457999999999854
No 133
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=27.32 E-value=8.5 Score=30.29 Aligned_cols=28 Identities=29% Similarity=0.885 Sum_probs=20.4
Q ss_pred cCCCcchHHHHHHHHhc--CCC-CCCCCCcc
Q 015207 52 QCGHEFHLDCIGSAFNM--KGA-MQCPNCRR 79 (411)
Q Consensus 52 pCGH~FC~~CI~~wl~s--k~s-~tCPiCR~ 79 (411)
.|...||..|+..-+.. .+. ..||.|++
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 68888999999865543 234 68999975
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.23 E-value=28 Score=27.22 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=22.4
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHH
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIG 63 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~ 63 (411)
..|.+|...|..- .+.---..||..||..|..
T Consensus 15 ~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSS-SCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccc-hhhhhhcCCCcEEChhhcC
Confidence 4799999988542 2222345799999998854
No 135
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.83 E-value=26 Score=27.27 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=23.5
Q ss_pred Cccccc--cccccccc-CccceEEe-----cCCCcchHHHHHHHH
Q 015207 30 GLACSI--CLDLVSEN-GIRSRAKL-----QCGHEFHLDCIGSAF 66 (411)
Q Consensus 30 el~C~I--CLe~f~dP-~~~~~v~L-----pCGH~FC~~CI~~wl 66 (411)
..-|+- |...+... +...+.-. .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 456876 77655432 22222222 699999999998874
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.82 E-value=27 Score=29.56 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=23.8
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
..|.+|...|..- .+.----.||..||..|...
T Consensus 70 ~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccc-cccccCCCCCeEEChHHhCC
Confidence 4799999988642 22224457999999999754
No 137
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.77 E-value=47 Score=33.64 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=30.3
Q ss_pred CcccccccccccccCccceEEe--cCCCcchHHHHHHHHhc--------CCCCCCCCCccc
Q 015207 30 GLACSICLDLVSENGIRSRAKL--QCGHEFHLDCIGSAFNM--------KGAMQCPNCRRI 80 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~L--pCGH~FC~~CI~~wl~s--------k~s~tCPiCR~~ 80 (411)
+..|.||-+--+ ....- .|...||..||...+.. .....|=+|.-.
T Consensus 93 ~~yCr~C~~Gg~-----l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET-----LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS-----CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe-----EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456888875321 11112 68899999999988732 356789888654
No 138
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.34 E-value=8.4 Score=29.43 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=29.1
Q ss_pred CCCcccccccccccccCccceEEecCCCcchHHHHHHHHh-cCCCCCCCCCcc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN-MKGAMQCPNCRR 79 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~-sk~s~tCPiCR~ 79 (411)
.+...| ||...... +..+.--.|.--||..|+.--.. ......||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~--~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAG--RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTT--CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCC--CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 99876542 22222235787899999863221 124567888864
No 139
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.88 E-value=24 Score=29.54 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=11.4
Q ss_pred cchHHHHHHHHhc
Q 015207 56 EFHLDCIGSAFNM 68 (411)
Q Consensus 56 ~FC~~CI~~wl~s 68 (411)
.||+.||.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 140
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.56 E-value=24 Score=29.44 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=11.3
Q ss_pred cchHHHHHHHHhc
Q 015207 56 EFHLDCIGSAFNM 68 (411)
Q Consensus 56 ~FC~~CI~~wl~s 68 (411)
.||+.||.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999964
No 141
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.43 E-value=13 Score=28.57 Aligned_cols=29 Identities=28% Similarity=0.815 Sum_probs=21.3
Q ss_pred cCCCcchHHHHHHHHhc--CC-CCCCCCCccc
Q 015207 52 QCGHEFHLDCIGSAFNM--KG-AMQCPNCRRI 80 (411)
Q Consensus 52 pCGH~FC~~CI~~wl~s--k~-s~tCPiCR~~ 80 (411)
.|...||..|+..-+.. ++ ...||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 68889999999854433 34 6689999753
No 142
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.87 E-value=10 Score=28.96 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=29.6
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHh--cCCCCCCCCCccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN--MKGAMQCPNCRRI 80 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~--sk~s~tCPiCR~~ 80 (411)
....| ||.....+ ++..+.--.|.--||..|+.--.. ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~-g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDD-GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCC-SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCC-CCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44678 79876533 122222336777789999864211 1345789999754
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.17 E-value=7.2 Score=28.99 Aligned_cols=43 Identities=26% Similarity=0.742 Sum_probs=27.0
Q ss_pred CCCcccccccccccccCccceEEe---c--CC-CcchHHHHHHHHhc--CCCCCCCCCcc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL---Q--CG-HEFHLDCIGSAFNM--KGAMQCPNCRR 79 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L---p--CG-H~FC~~CI~~wl~s--k~s~tCPiCR~ 79 (411)
.+...| ||.+... . .++ . |. .-||..|+. +.. .+...||.|++
T Consensus 7 ~e~~yC-~C~~~~~-g-----~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-----EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-----CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344567 9987532 1 233 3 55 579999997 332 35678999865
No 144
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.37 E-value=35 Score=25.64 Aligned_cols=43 Identities=21% Similarity=0.456 Sum_probs=29.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCC
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNC 77 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiC 77 (411)
..|--|+..+.+. ....-..|++.||.+|=.-.- ...-+||-|
T Consensus 16 ~~C~~C~~~~~~~--~~y~C~~C~~~FC~dCD~fiH--e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ--HVYVCAVCQNVFCVDCDVFVH--DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS--EEECCTTTTCCBCHHHHHTTT--TTSCSSSTT
T ss_pred CcccccCcccCCC--ccEECCccCcCcccchhHHHH--hhccCCcCC
Confidence 3599999888543 112345799999999975322 334479988
No 145
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=22.78 E-value=11 Score=29.44 Aligned_cols=36 Identities=11% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCCCCCCccccc--cccccccCcccCCCCCCcCCCCCC
Q 015207 71 AMQCPNCRRIEK--GQWLYANGSTRSLPELSMEDWIPD 106 (411)
Q Consensus 71 s~tCPiCR~~v~--~n~l~a~~~e~~~~ei~~dd~~~d 106 (411)
.+.||+|.+++. ..+.+...+.+.-..+++..|..+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~Wa~e 46 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAE 46 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSS
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHHHhcC
Confidence 457999999983 123333344444556777777765
No 146
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.59 E-value=39 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.563 Sum_probs=29.1
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhc--CC-CCCCCCCcc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KG-AMQCPNCRR 79 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~-s~tCPiCR~ 79 (411)
..|.||...-... ..+.--.|...||..|+..-+.. .+ ...||.|..
T Consensus 27 c~C~vC~~~~~~~--~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN--MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST--TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC--CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3678888642211 11122278889999999854433 34 568999964
No 147
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=21.86 E-value=7.1 Score=29.60 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=26.5
Q ss_pred CCCcccccccccccccCccceEEe---cCCCcchHHHHHHHHhc------CCCCCCCCCcc
Q 015207 28 SSGLACSICLDLVSENGIRSRAKL---QCGHEFHLDCIGSAFNM------KGAMQCPNCRR 79 (411)
Q Consensus 28 s~el~C~ICLe~f~dP~~~~~v~L---pCGH~FC~~CI~~wl~s------k~s~tCPiCR~ 79 (411)
+..+.| ||....... .++.- .|.--||..|+.-.-.. .....||.||.
T Consensus 8 e~~v~C-~C~~~~~~g---~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVND---SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCS---CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCC---CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344667 897654432 12332 26667999998421100 02467999974
No 148
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.50 E-value=20 Score=33.86 Aligned_cols=48 Identities=23% Similarity=0.548 Sum_probs=26.7
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHhc--CC-CCCCCCCccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNM--KG-AMQCPNCRRI 80 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~s--k~-s~tCPiCR~~ 80 (411)
..|.+|...-.. ...+..-.|...||..|+..-+.. .+ ...||.|+..
T Consensus 175 c~C~vC~~~~~~--~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC----CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCC--CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 457888764211 111222368889999999864443 34 5689999753
No 149
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.33 E-value=38 Score=26.94 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=31.2
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHHHHh-----cCCCCCCCCCcccc
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFN-----MKGAMQCPNCRRIE 81 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~-----sk~s~tCPiCR~~v 81 (411)
..|.+|...|..- .+.---..||..||..|....+. .+..+.|-.|-..+
T Consensus 10 ~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 10 SRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp SBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCcCcCCcccCc-cccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4799999988643 22224457999999999854321 12234566665544
No 150
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=21.27 E-value=38 Score=28.20 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=27.8
Q ss_pred CCcccccccccccccCccceEEe---cCCCcchHHHHHHHHhc--CCCCCCCCCcccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKL---QCGHEFHLDCIGSAFNM--KGAMQCPNCRRIE 81 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~L---pCGH~FC~~CI~~wl~s--k~s~tCPiCR~~v 81 (411)
.+..|.+|.+. ++ ++.- .|-..||..|+. +.. ++...||.|+..+
T Consensus 14 ~~~~C~~C~~~----G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 14 HEDYCFQCGDG----GE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SCSSCTTTCCC----SE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCcCCCC----Cc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34579999842 11 1222 366789999987 433 4567799775443
No 151
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.78 E-value=1.3e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=19.2
Q ss_pred Ccccccccccccc--cCccceEEecCCCcchHH
Q 015207 30 GLACSICLDLVSE--NGIRSRAKLQCGHEFHLD 60 (411)
Q Consensus 30 el~C~ICLe~f~d--P~~~~~v~LpCGH~FC~~ 60 (411)
...|.+|...+.. + ..-.||..||..
T Consensus 25 ~~rC~~C~kkvgl~~~-----f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATS-----FECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSC-----EECTTCCEECTT
T ss_pred CccchhhCCeecccCC-----eEcCCCCEeccc
Confidence 4579999986543 4 555799999964
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.65 E-value=32 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=24.3
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
+..|.+|...|.-- .+.--...||..||..|...
T Consensus 161 ~~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCc-ccccccCCcCCEEChHHhCC
Confidence 46899999988642 22224457999999998754
No 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.54 E-value=46 Score=25.30 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.3
Q ss_pred cccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 31 LACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 31 l~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
..|.+|...|..- .+.---..||..||..|...
T Consensus 12 ~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCc-cccccCCCCCEEEcccccCC
Confidence 4799999988642 22223457999999999753
No 154
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.42 E-value=85 Score=27.00 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCcccccccccccccCccceEEecCCCcchHHHHHHHHhcCCCCCCCCCccccc
Q 015207 29 SGLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGSAFNMKGAMQCPNCRRIEK 82 (411)
Q Consensus 29 ~el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~wl~sk~s~tCPiCR~~v~ 82 (411)
.-+.|..|...|... ....=|..||..|..+.+. ..|..|.+.+.
T Consensus 32 ~CF~C~~C~~~L~~~-----~f~~~g~~yC~~~y~~~f~----~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAER-----CFSRGESVYCKDDFFKRFG----TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSC-----CEESSSCEECHHHHHHHHS----CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCC-----CcccCCeeeeccccccccc----ccccccccccC
Confidence 458899999888653 1234577899999988773 36999988764
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.04 E-value=36 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=24.6
Q ss_pred CcccccccccccccCccceEEecCCCcchHHHHHH
Q 015207 30 GLACSICLDLVSENGIRSRAKLQCGHEFHLDCIGS 64 (411)
Q Consensus 30 el~C~ICLe~f~dP~~~~~v~LpCGH~FC~~CI~~ 64 (411)
...|.+|...|.-- .+.--...||..||..|...
T Consensus 164 ~~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCcc-ccccccCCCcCEeChhhcCC
Confidence 35899999888642 22234557999999999764
Done!