BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015208
(411 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 38/260 (14%)
Query: 61 YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPS-DVFLLKLSCYDR 119
Y +W+ D+ T+ + R++ S V Y P P V L + C D
Sbjct: 714 YPSYWLGFDTDTQ--MRHARMVHDSDRYRSPVTVEAY------PIPERGVTELTVLCADH 765
Query: 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHL--K 177
GL + L +I +I T DG +D F+V D + HL +
Sbjct: 766 PGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLVEQ 825
Query: 178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 237
+ G I +E T+ + +P ++ ID
Sbjct: 826 ALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------------ID 861
Query: 238 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQADG 296
N+ S HT++++ +D GLL+D+ L ++Q+S + G +D+F + G
Sbjct: 862 NTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDVFYVRDLLG 919
Query: 297 KKIVDPSKQNGLSSRLWMEL 316
KI DP + L L L
Sbjct: 920 MKITDPVRLARLRETLLASL 939
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP 302
G T + ++C DH GL I L + R G ++ +G +P
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEP 813
Query: 303 SK--------QNGLSSRL----------------WMELLQ-PLRVTVVSRGPDTELLVAN 337
+ + LS RL M + P RV + + D ++
Sbjct: 814 HQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVI-- 871
Query: 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 369
E++G+ RP + HD+T AL + I SA I
Sbjct: 872 --EVNGRDRPGLLHDVTSALSSASLQISSAHI 901
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 293
V IDN+ S HT++++ +D GLLYD+ R L + +Q+S + S G ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904
Query: 294 -ADGKKIVDPSKQNGLSSRLWMELLQP 319
G K+ +K + RL L P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
+++++ DR GLLYD+T L L L I KIST + K +D+F+V D
Sbjct: 859 VIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE-KAIDVFYVKD 905
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
D GL + + + I KI+T DG +D+F V +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------------Q 774
Query: 178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE---------LPSGSLT 228
T+ G+A+ + + L + D+L D+P+E LP +
Sbjct: 775 TLEGHAI-------------EKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRH 821
Query: 229 CS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 287
+ V +DN S HT+++I +D G LY + R L D +Q+S R S G +
Sbjct: 822 LTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVV 879
Query: 288 DLFIMQ-ADGKKIVDPSK 304
D F ++ G KIV +K
Sbjct: 880 DSFYVKDVFGMKIVHRAK 897
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
QA K V ++++ DR G LY VT L ++ + I ++ST + +V+D F+V D
Sbjct: 833 QASKTHTV--IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGE-RVVDSFYVKD 886
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 41/214 (19%)
Query: 99 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
AE Q S+ + ++ DR+GL D+ + L + ++ T+ G+ +D+F+V D
Sbjct: 725 AEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784
Query: 159 TR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAII 211
E +R D E G+A+ VE G+E T + A + PS
Sbjct: 785 VTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRGSEQTRAA-AFAIAPS--- 835
Query: 212 DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ 271
VTIDN S T+V+ +D GLL+ + +TL D +
Sbjct: 836 ----------------------VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 272 VSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 304
+ G +D F +Q +G K+ D K
Sbjct: 874 IQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 41/214 (19%)
Query: 99 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
AE Q S+ + ++ DR+GL D+ + L + ++ T+ G+ +D+F+V D
Sbjct: 725 AEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784
Query: 159 TR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAII 211
E +R D E G+A+ VE G+E T + A + PS
Sbjct: 785 VTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRGSEQTRAA-AFAIAPS--- 835
Query: 212 DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ 271
VTIDN S T+V+ +D GLL+ + +TL D +
Sbjct: 836 ----------------------VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 272 VSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 304
+ G +D F +Q +G K+ D K
Sbjct: 874 IQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 233 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 291
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 883
Query: 292 MQADGKKIVDPSKQNGLSSRL 312
G+KI SK+ +++R+
Sbjct: 884 TDLVGQKISGDSKRANITARM 904
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ C DR GLL D+TAV+ +L L I +I+T + KV+D F+VTD
Sbjct: 841 VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE-KVIDTFYVTD 887
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 233 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 291
SVTI N LS T++++ C D GLL D+ + D ++ + R + G ID F +
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARIT--TFGEKVIDTFYV 885
Query: 292 MQADGKKIVDPSKQNGLSSRL 312
G+K+ + ++Q ++ RL
Sbjct: 886 TDLFGQKVTNDNRQASIAQRL 906
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 31/192 (16%)
Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
DR L D+ + + ++ T+ G+ +D+F+V D
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDAS----------------- 783
Query: 178 TILGNAMISCDVEMVG--TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 235
G S D + E AC A+ P A P +L + +V
Sbjct: 784 ---GQPFGSHDPRALARLAETLAC--AARGEPVA----REPRKPQDLGRTAAFAITPAVM 834
Query: 236 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQA 294
+DN S T+V+ +D GLL + RT+ D + + G +D F ++ A
Sbjct: 835 LDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID--GYGERAVDAFYVVDA 892
Query: 295 DGKKIVDPSKQN 306
DG+K+ D K+N
Sbjct: 893 DGRKLTDARKRN 904
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 34/197 (17%)
Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
D+ L V A L + +I T+ DG V+D F V D
Sbjct: 700 DQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTFMVLDQH----------------- 742
Query: 178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 237
G A+ V +T +A P+ I L NV +D
Sbjct: 743 ---GEAIDESRHAAVIKHLTHVLEAGR--PTKI--------KTRRTPNKLQHFNVKTKVD 789
Query: 238 NSLSPG--HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD 295
+ G HTL++ V D GLL + RT D NI + + + G DLFI+ ++
Sbjct: 790 FLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKIT--TIGERAEDLFILTSE 847
Query: 296 GKKIVDPSKQNGLSSRL 312
+ +QN L +L
Sbjct: 848 AGGRLSEEQQNELRDKL 864
>sp|Q47F95|GLND_DECAR [Protein-PII] uridylyltransferase OS=Dechloromonas aromatica
(strain RCB) GN=glnD PE=3 SV=1
Length = 852
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%)
Query: 3 ILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFF---GLSIVRGDVSTDGKW 59
I + V+ ++ ++EGD + V D+ L RI+ FF G SIV + T
Sbjct: 657 IYNNQPVVRARPNQEGDGLQVMVYTQDQPDL---FARIVGFFARAGYSIVDAKIHTTAHG 713
Query: 60 CYIVFWVIGDSQTR----------WGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPS-- 107
+ +V+ D + R L++RL+ P +S L + + KP
Sbjct: 714 YALDSFVVLDIEERDNDREMVAYIEHELEQRLLHQMPRDVPSSGRLSRQVKHFPIKPEVS 773
Query: 108 -------DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT--D 158
F+L L DR GLLY V L E + KI+T + + D+F ++ D
Sbjct: 774 IRGDEKGTHFILSLVAADRPGLLYTVANTLTEHGAYLHTAKITTLGE-RAEDVFLISGGD 832
Query: 159 TRELLHTRKRKE 170
R+ H R R E
Sbjct: 833 LRD-THNRIRLE 843
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 292
VTI NSLS T+++I C D GLL ++ L D ++ + R + G ID F ++
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVI 885
Query: 293 QADGKKIVDPSKQNGLSSRL 312
G+KI + ++Q +S RL
Sbjct: 886 DLVGQKITNENRQGSISVRL 905
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ C DR GLL +VTAVL +L L I +I+T + KV+D F+V D
Sbjct: 840 VIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGE-KVIDTFYVID 886
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+V D
Sbjct: 840 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVAD 886
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 233 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 292
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 884
Query: 293 QAD--GKKIVDPSKQNGLSSRL 312
AD G+KI + +++ +++RL
Sbjct: 885 -ADLVGQKISNENRRAYITARL 905
>sp|Q470D5|GLND_CUPPJ [Protein-PII] uridylyltransferase OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=glnD PE=3 SV=1
Length = 869
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 87 SCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 146
S S S + R +++ + +LL LS DR GLLY +T VL + +++ +I+T
Sbjct: 776 SRQSRSFPIKPRVDLRPDERGQYYLLSLSANDRTGLLYAITRVLAKHRVSVHTARINTLG 835
Query: 147 DGKVMDLFFVTDTR 160
+ +V D+F V +R
Sbjct: 836 E-RVEDVFLVDGSR 848
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHTRKRK 169
++L D+ GLL DV+ V EL L+I+ KI+T + K D F +T+ + E L R+R+
Sbjct: 807 MELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGE-KAQDFFILTNAKGEALSERERQ 864
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTD 891
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 292
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 293 QADGKKIVDPSKQNGLSSRL 312
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTD 891
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 292
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 293 QADGKKIVDPSKQNGLSSRL 312
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 98 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157
RAE++ + ++++ DR GLL ++T L +L L I I+T + KV+D F+VT
Sbjct: 835 RAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGE-KVIDTFYVT 893
Query: 158 D 158
D
Sbjct: 894 D 894
>sp|Q1LNG0|GLND_RALME [Protein-PII] uridylyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=glnD PE=3 SV=1
Length = 857
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 87 SCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 146
S S S + R +++ + +LL +S DR GLLY + VL + +++ +I+T
Sbjct: 764 SRQSRSFPIKPRVDLRPDERGQYYLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLG 823
Query: 147 DGKVMDLFFVTDTR 160
+ +V D+F V +R
Sbjct: 824 E-RVEDVFLVDGSR 836
>sp|Q8XZJ3|GLND_RALSO [Protein-PII] uridylyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=glnD PE=3 SV=1
Length = 861
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 87 SCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 146
S S S + R +++ + +LL LS DR GLLY + VL +++ +I+T
Sbjct: 768 SRQSRSFPIKPRVDLRPDERGQYYLLSLSATDRTGLLYAIARVLARHRVSVHTARINTL- 826
Query: 147 DGKVMDLFFVTDTRELLHTRK 167
G+ ++ F+ D R L K
Sbjct: 827 -GERVEDVFLLDGRRLTQDNK 846
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Query: 15 DKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIV--RGDVSTDGKWCYIVFWVIGDSQT 72
D + D D G+ L + G ++V R + DG + VFW+ +
Sbjct: 735 DPDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDG-YATAVFWIQDSEGS 793
Query: 73 RW---------GLLKKRLMG---ACPSCSSASVVLYYRAEMQAP-------KPSDVF-LL 112
+ ++ K L G A + + A+ + P + SD++ ++
Sbjct: 794 PYEISRLPRLTSMIDKTLKGEVVAREALKDRDKLKKREAQFRFPTHIAFDNEGSDIYTII 853
Query: 113 KLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL-LHTRKRKED 171
++ DR GLLYD+T L + I I+T +V+D F+V D L LH + R+E
Sbjct: 854 EVDTRDRPGLLYDLTRTLAANNIYIASAVIATY-GAQVVDSFYVKDMFGLKLHQKNRQET 912
Query: 172 TYEHLKTIL 180
+ L+ +
Sbjct: 913 LEKKLRQAI 921
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 293
+ DN S +T++++ +D GLLYD+ RTL NI ++ + G +D F ++
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIA--TYGAQVVDSFYVK 897
Query: 294 -ADGKKIVDPSKQNGLSSRLWMELLQ 318
G K+ ++Q L +L +++
Sbjct: 898 DMFGLKLHQKNRQETLEKKLRQAIVE 923
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 36/208 (17%)
Query: 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHT 165
++VF+ C D+ L V + + + +I +I TT DG V D F +T+ EL+
Sbjct: 687 TEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEF 743
Query: 166 RKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSG 225
+R+E L+ L A+ S + + IT Q F + LH +
Sbjct: 744 DRRRE-----LEQALTLALQSEKLSALS--ITPNRQLQHFTVQTDVRFLHEN-------- 788
Query: 226 SLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC 285
HT +++V D GLL + + + N+ + + + G
Sbjct: 789 ---------------KKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITT--VGEK 831
Query: 286 EIDLFIMQADGKKIVDPSKQNGLSSRLW 313
D FI+ + +D ++ L + L+
Sbjct: 832 AEDFFILTNQFGQALDSQQREILRNVLY 859
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 28/200 (14%)
Query: 114 LSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTY 173
+ D G+ + L + + + TT DG V D F++ D + R
Sbjct: 722 FAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDAEGHPYEAARLPRLS 781
Query: 174 EHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVS 233
+ + L +++ D +I +A ++P
Sbjct: 782 QMILKTLKGEVVARDALKSRDKIKKREKA-------------FNVPTH------------ 816
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 293
+T DN S +T++++ +D GLLYD+ R L N+ ++ + G +D F ++
Sbjct: 817 ITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIA--TYGEQVVDSFYVK 874
Query: 294 -ADGKKIVDPSKQNGLSSRL 312
G K +KQ L ++L
Sbjct: 875 DMFGLKYHSEAKQRTLETKL 894
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 107 SDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHT 165
SD++ ++++ DR GLLYD+ L + I I+T + +V+D F+V D L +
Sbjct: 824 SDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGE-QVVDSFYVKDMFGLKYH 882
Query: 166 RKRKEDTYE 174
+ K+ T E
Sbjct: 883 SEAKQRTLE 891
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 167
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 168 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 223
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 224 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 277
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 167
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 168 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 223
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 224 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 277
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 86 PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145
P ++ + + R E+ + ++++ DR GLL ++T ++ +L L I I+T
Sbjct: 823 PKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTF 882
Query: 146 PDGKVMDLFFVTD 158
+ KV+D F+VTD
Sbjct: 883 GE-KVIDSFYVTD 894
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 290
VTI+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 892
Query: 291 -IMQADGKKIVDPSKQNGLSSRL 312
+ G +I P++Q+ + S L
Sbjct: 893 YVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 290
VTI+N S HT++++ D GLL+ + + N+ ++ F R R D+F
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERAR-----DVF 891
Query: 291 -IMQADGKKIVDPSKQNGLSSRL 312
+ G +I P++Q + L
Sbjct: 892 YVTDLLGARITAPTRQAAIKRAL 914
>sp|Q2L165|GLND_BORA1 [Protein-PII] uridylyltransferase OS=Bordetella avium (strain 197N)
GN=glnD PE=3 SV=1
Length = 858
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 29/195 (14%)
Query: 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGK-WCYIVF 64
D V+ + +EG I V D L + C SI + T + W F
Sbjct: 659 DKPVVKVRPTEEGSGLQIMVYTRDTPDLFMNTCAYFDGKAFSIQDARIHTTRQGWALDSF 718
Query: 65 WVI-----GDSQTRWGL----LKKRLMGACPSCSSASVVLYYR---------------AE 100
V+ D + + L L +RL A A V +++R AE
Sbjct: 719 IVLPAEPLADLRAQAALVEHELAERLRQAQGGARLADVRVFHRNRQSRVSRVFPVMPQAE 778
Query: 101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 160
+ + S + L ++ DR GLL+ + V+ E + + KI T D +V D+F ++
Sbjct: 779 LHPDERSQSWRLSVTATDRPGLLHALARVMAENGVNLIMAKIMTLGD-RVEDVFIISGA- 836
Query: 161 ELLHTRKRKEDTYEH 175
+ R R + +EH
Sbjct: 837 --VLERPRTQMQFEH 849
>sp|Q3SKP1|GLND_THIDA [Protein-PII] uridylyltransferase OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=glnD PE=3 SV=1
Length = 850
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 100 EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 159
++A + D +L ++C DR GLL+ + L E+++ KI T + +V D F +
Sbjct: 772 HLEADRGGDGQVLSITCADRGGLLFAIAEELMRHEISVYAAKIDTLGE-RVEDTFLIRGE 830
Query: 160 RELLHTRKRKEDTYEHLKTILG 181
R L+ + L+ +LG
Sbjct: 831 R--LNAPPERAALENELRGVLG 850
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT-RELLHTRKRKE 170
L+L+ D+ GLL V V +L L++ +IST + +V DLF + D+ R L+ R++
Sbjct: 819 LELTALDQPGLLARVGEVFADLNLSLHGARISTIGE-RVEDLFILADSDRRALNPETRRK 877
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHT 165
++VF+ C D+ L V + + + +I +I TT DG V D F +T+ EL+
Sbjct: 687 TEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEF 743
Query: 166 RKRKE 170
+R+E
Sbjct: 744 DRRRE 748
>sp|Q92854|SEM4D_HUMAN Semaphorin-4D OS=Homo sapiens GN=SEMA4D PE=1 SV=1
Length = 862
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Query: 52 DVSTDGKWCYIVFWVIGDSQTRW----GLLKKRLMGACPSCSSASVVLYYRAEMQAPKPS 107
+V + GK Y+ + S T+W G + K GAC S + Y + + P +
Sbjct: 335 EVFSHGK--YMQSTTVEQSHTKWVRYNGPVPKPRPGAC--IDSEARAANYTSSLNLPDKT 390
Query: 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHT 165
F+ D D L + ++ ++ + T DG V D+ FV+ R LH
Sbjct: 391 LQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALH- 449
Query: 166 RKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFL 206
K + EH I+ + D E V T + + + + F+
Sbjct: 450 ---KAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFV 487
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHT 165
++VF+ C D+ L V + + + +I +I TT DG V D F +T+ EL+
Sbjct: 687 TEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEF 743
Query: 166 RKRKE 170
+R+E
Sbjct: 744 DRRRE 748
>sp|B7VIS0|GLND_VIBSL [Protein-PII] uridylyltransferase OS=Vibrio splendidus (strain
LGP32) GN=glnD PE=3 SV=1
Length = 873
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 98 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157
R E K L++L D GLL V A EL++ + KI+T + + DLF +T
Sbjct: 787 RVEFLPTKSKKRTLMELRALDTPGLLAQVGATFAELDINLHGAKITTIGE-RAEDLFILT 845
>sp|C1CY24|COAD_DEIDV Phosphopantetheine adenylyltransferase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=coaD PE=3
SV=1
Length = 170
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 231 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 290
NVSV S G LV + Q+HKG++ +R + DY ++ + RQ G E +F
Sbjct: 64 NVSVD-----SFGGLLVDYMAQEHKGIIIRGLRAVSDYEYELQIAHLN-RQIGEVET-VF 116
Query: 291 IMQADGKKIVDPSKQNGLSS 310
IM A V S ++S
Sbjct: 117 IMAATRWSFVSSSMVREIAS 136
>sp|Q65U07|GLO2_MANSM Hydroxyacylglutathione hydrolase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=gloB PE=3 SV=1
Length = 236
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLV 247
D+ + G TA A+ + I H + V +PSG T ++VS IDN L G TL
Sbjct: 70 DIPVYGPAETADKGATHIVNEGNIQTAHYRIEV-VPSGGHTANHVSYLIDNHLFCGDTLF 128
Query: 248 QIVC 251
C
Sbjct: 129 SAGC 132
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 233 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 292
VTI N T+++I D GLL I R +++I + + + E FI
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE-RVEDVFFIT 861
Query: 293 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTEL 333
AD + + DP L SRL ++Q L+ S + +
Sbjct: 862 DADNQPLSDPQ----LCSRLQEAIIQQLQAGQASEASPSRM 898
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,486,647
Number of Sequences: 539616
Number of extensions: 6570912
Number of successful extensions: 13232
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 13159
Number of HSP's gapped (non-prelim): 111
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)