Query 015208
Match_columns 411
No_of_seqs 338 out of 2017
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 3.5E-29 7.6E-34 274.2 25.3 184 101-316 669-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 6.4E-29 1.4E-33 273.0 25.7 187 101-318 693-880 (884)
3 TIGR01693 UTase_glnD [Protein- 99.9 4.8E-26 1E-30 250.8 24.8 187 102-316 661-849 (850)
4 PRK00275 glnD PII uridylyl-tra 99.9 1.5E-25 3.1E-30 246.6 26.2 184 107-319 702-888 (895)
5 PRK05007 PII uridylyl-transfer 99.9 2.1E-25 4.5E-30 245.4 23.4 173 7-182 689-880 (884)
6 PRK04374 PII uridylyl-transfer 99.9 4.2E-25 9.2E-30 241.6 25.3 182 104-317 685-867 (869)
7 PRK01759 glnD PII uridylyl-tra 99.9 3.1E-25 6.6E-30 243.2 23.4 172 7-180 665-853 (854)
8 PRK03059 PII uridylyl-transfer 99.9 9.9E-25 2.2E-29 239.1 25.0 183 104-317 673-855 (856)
9 PRK04374 PII uridylyl-transfer 99.9 9.4E-25 2E-29 238.8 24.3 174 6-181 676-867 (869)
10 PRK00275 glnD PII uridylyl-tra 99.9 9.1E-25 2E-29 240.3 23.4 175 6-183 688-888 (895)
11 PRK05092 PII uridylyl-transfer 99.9 2.1E-24 4.7E-29 239.3 26.4 190 102-318 725-916 (931)
12 COG2844 GlnD UTP:GlnB (protein 99.9 1.5E-24 3.3E-29 226.5 20.9 183 104-317 679-862 (867)
13 PRK03059 PII uridylyl-transfer 99.9 6E-24 1.3E-28 232.9 22.9 171 6-181 665-855 (856)
14 PRK03381 PII uridylyl-transfer 99.9 8.1E-24 1.8E-28 229.9 23.0 167 7-176 587-772 (774)
15 PRK03381 PII uridylyl-transfer 99.9 1.2E-23 2.5E-28 228.7 24.0 175 107-313 597-773 (774)
16 PRK05092 PII uridylyl-transfer 99.9 2.3E-22 5.1E-27 223.1 24.2 176 6-183 718-917 (931)
17 TIGR01693 UTase_glnD [Protein- 99.9 3E-22 6.4E-27 220.8 23.8 173 6-180 655-849 (850)
18 COG2844 GlnD UTP:GlnB (protein 99.9 8.7E-22 1.9E-26 206.0 20.3 175 5-182 670-863 (867)
19 PRK11589 gcvR glycine cleavage 99.8 1.7E-19 3.7E-24 163.9 16.2 158 241-408 5-170 (190)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 9.6E-20 2.1E-24 140.1 11.3 74 244-319 1-75 (75)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 4.1E-18 8.9E-23 131.1 10.9 75 245-319 1-75 (75)
22 COG2716 GcvR Glycine cleavage 99.8 3.2E-18 6.9E-23 148.9 10.4 144 242-397 3-151 (176)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 8.1E-18 1.8E-22 128.5 10.1 68 244-313 1-69 (72)
24 cd04897 ACT_ACR_3 ACT domain-c 99.7 1.4E-16 3E-21 122.6 11.3 73 109-182 1-74 (75)
25 cd04895 ACT_ACR_1 ACT domain-c 99.7 3.4E-16 7.4E-21 119.6 10.6 68 109-177 1-69 (72)
26 cd04927 ACT_ACR-like_2 Second 99.7 9.4E-16 2E-20 119.3 11.5 72 111-182 2-73 (76)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.9E-15 4E-20 116.7 10.8 71 110-180 2-73 (73)
28 PRK11589 gcvR glycine cleavage 99.6 5.4E-15 1.2E-19 134.4 15.2 158 16-181 4-167 (190)
29 cd04896 ACT_ACR-like_3 ACT dom 99.6 3.6E-15 7.8E-20 114.7 10.7 71 110-182 1-74 (75)
30 cd04925 ACT_ACR_2 ACT domain-c 99.6 6.8E-15 1.5E-19 113.9 10.7 71 110-181 1-73 (74)
31 cd04925 ACT_ACR_2 ACT domain-c 99.5 3E-13 6.5E-18 104.6 10.4 71 245-317 1-73 (74)
32 cd04928 ACT_TyrKc Uncharacteri 99.5 3E-13 6.6E-18 102.0 9.8 64 21-85 2-67 (68)
33 cd04928 ACT_TyrKc Uncharacteri 99.5 7E-13 1.5E-17 100.0 10.1 66 110-180 2-67 (68)
34 COG2716 GcvR Glycine cleavage 99.4 5.1E-13 1.1E-17 116.5 9.5 156 17-178 2-161 (176)
35 cd04927 ACT_ACR-like_2 Second 99.4 3E-12 6.4E-17 99.6 11.1 72 246-319 2-74 (76)
36 cd04898 ACT_ACR-like_4 ACT dom 99.4 4.3E-13 9.4E-18 100.7 4.9 72 338-410 2-77 (77)
37 cd04900 ACT_UUR-like_1 ACT dom 99.4 6.8E-12 1.5E-16 96.8 10.1 70 245-315 2-72 (73)
38 cd04926 ACT_ACR_4 C-terminal 99.3 9.6E-12 2.1E-16 95.7 10.7 67 110-177 2-68 (72)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 3.3E-11 7.1E-16 91.7 10.5 70 110-180 1-70 (70)
40 PRK00227 glnD PII uridylyl-tra 99.2 2.9E-10 6.2E-15 121.8 16.2 145 109-317 546-691 (693)
41 PRK00227 glnD PII uridylyl-tra 99.1 5.1E-10 1.1E-14 119.9 14.6 142 21-181 547-691 (693)
42 cd04926 ACT_ACR_4 C-terminal 99.1 6.3E-10 1.4E-14 85.5 9.3 63 20-82 1-68 (72)
43 cd04894 ACT_ACR-like_1 ACT dom 99.1 4.6E-10 1E-14 81.2 7.4 66 21-86 1-69 (69)
44 cd04899 ACT_ACR-UUR-like_2 C-t 99.0 2.7E-09 5.8E-14 81.0 10.3 68 245-315 1-69 (70)
45 cd04873 ACT_UUR-ACR-like ACT d 99.0 7.3E-09 1.6E-13 78.3 10.5 69 110-179 1-69 (70)
46 PF13740 ACT_6: ACT domain; PD 98.8 4.2E-08 9.1E-13 76.2 9.6 64 244-315 2-65 (76)
47 cd04873 ACT_UUR-ACR-like ACT d 98.7 1.6E-07 3.6E-12 70.8 10.2 68 245-315 1-69 (70)
48 PF13740 ACT_6: ACT domain; PD 98.7 2.3E-07 5.1E-12 71.9 9.9 67 109-182 2-68 (76)
49 cd04893 ACT_GcvR_1 ACT domains 98.6 3E-07 6.6E-12 71.5 9.0 63 21-84 2-64 (77)
50 cd04870 ACT_PSP_1 CT domains f 98.6 2.7E-07 6E-12 71.3 7.9 63 246-316 1-64 (75)
51 cd04893 ACT_GcvR_1 ACT domains 98.5 7.5E-07 1.6E-11 69.3 9.5 64 244-315 1-64 (77)
52 cd04870 ACT_PSP_1 CT domains f 98.5 6.5E-07 1.4E-11 69.2 8.6 63 22-85 1-64 (75)
53 PF01842 ACT: ACT domain; Int 98.3 4.6E-06 1E-10 62.0 9.4 62 110-178 1-63 (66)
54 cd04875 ACT_F4HF-DF N-terminal 98.3 6E-06 1.3E-10 63.5 9.4 64 22-85 1-67 (74)
55 PF01842 ACT: ACT domain; Int 98.3 4.2E-06 9.2E-11 62.2 8.2 63 245-314 1-63 (66)
56 COG4747 ACT domain-containing 98.3 5.7E-05 1.2E-09 62.3 14.8 113 21-156 4-116 (142)
57 cd04869 ACT_GcvR_2 ACT domains 98.3 6.1E-06 1.3E-10 64.4 9.0 64 22-85 1-70 (81)
58 cd04872 ACT_1ZPV ACT domain pr 98.2 3.8E-06 8.2E-11 67.0 7.4 65 21-85 2-67 (88)
59 PRK00194 hypothetical protein; 98.2 7.9E-06 1.7E-10 65.3 7.7 66 20-85 3-69 (90)
60 cd04872 ACT_1ZPV ACT domain pr 98.1 7.1E-06 1.5E-10 65.4 6.7 49 337-389 2-50 (88)
61 cd04875 ACT_F4HF-DF N-terminal 98.1 1.8E-05 3.9E-10 60.8 8.0 32 339-370 2-33 (74)
62 cd04894 ACT_ACR-like_1 ACT dom 98.1 1.6E-05 3.5E-10 57.9 6.5 67 110-179 1-67 (69)
63 PRK00194 hypothetical protein; 98.1 1.2E-05 2.6E-10 64.2 6.7 50 336-389 3-52 (90)
64 PRK06027 purU formyltetrahydro 98.0 6.6E-05 1.4E-09 73.1 12.4 67 242-314 4-72 (286)
65 cd04869 ACT_GcvR_2 ACT domains 98.0 2.9E-05 6.3E-10 60.5 7.8 32 339-370 2-33 (81)
66 PRK07431 aspartate kinase; Pro 98.0 0.015 3.2E-07 62.4 30.0 270 22-370 272-556 (587)
67 PRK06027 purU formyltetrahydro 97.9 0.00027 5.9E-09 68.8 14.3 68 19-86 5-75 (286)
68 TIGR00655 PurU formyltetrahydr 97.9 0.00027 5.9E-09 68.5 13.9 115 22-144 2-119 (280)
69 PRK13011 formyltetrahydrofolat 97.8 0.00048 1E-08 67.0 14.5 117 19-144 6-124 (286)
70 PRK13010 purU formyltetrahydro 97.8 0.00033 7.1E-09 68.2 12.6 117 19-144 8-128 (289)
71 COG3830 ACT domain-containing 97.8 3.3E-05 7.2E-10 60.9 4.4 65 20-85 3-69 (90)
72 PRK13010 purU formyltetrahydro 97.7 0.00036 7.7E-09 68.0 12.3 36 243-278 8-43 (289)
73 PF13291 ACT_4: ACT domain; PD 97.7 0.00021 4.6E-09 55.6 8.6 64 108-176 5-69 (80)
74 PRK13011 formyltetrahydrofolat 97.7 0.00054 1.2E-08 66.6 12.8 35 244-278 7-41 (286)
75 TIGR00655 PurU formyltetrahydr 97.7 0.0007 1.5E-08 65.7 13.4 106 246-361 2-109 (280)
76 PF13291 ACT_4: ACT domain; PD 97.7 0.00036 7.7E-09 54.3 8.9 65 243-312 5-69 (80)
77 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00051 1.1E-08 52.3 9.1 62 112-178 2-63 (74)
78 COG3830 ACT domain-containing 97.6 8.9E-05 1.9E-09 58.5 4.5 69 243-317 2-70 (90)
79 COG4747 ACT domain-containing 97.6 0.0042 9.2E-08 51.4 13.9 124 111-314 5-128 (142)
80 CHL00100 ilvH acetohydroxyacid 97.5 0.00022 4.7E-09 64.1 6.7 51 337-391 3-53 (174)
81 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0013 2.8E-08 50.1 9.3 61 247-313 2-62 (74)
82 COG0788 PurU Formyltetrahydrof 97.4 0.00072 1.6E-08 63.8 8.7 65 19-83 6-73 (287)
83 PRK06737 acetolactate synthase 97.3 0.00056 1.2E-08 52.9 6.1 63 337-408 3-65 (76)
84 PRK08178 acetolactate synthase 97.3 0.0014 2.9E-08 52.8 7.5 64 336-409 8-71 (96)
85 PRK13562 acetolactate synthase 97.2 0.00084 1.8E-08 52.7 6.0 64 338-409 4-67 (84)
86 cd04889 ACT_PDH-BS-like C-term 97.2 0.0017 3.6E-08 46.8 6.6 47 112-158 1-47 (56)
87 PRK07431 aspartate kinase; Pro 97.2 0.38 8.2E-06 51.7 27.4 191 18-273 346-551 (587)
88 COG0788 PurU Formyltetrahydrof 97.1 0.0031 6.8E-08 59.6 9.0 67 108-178 6-73 (287)
89 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0061 1.3E-07 45.4 9.3 61 112-177 1-65 (73)
90 PRK06737 acetolactate synthase 97.0 0.0047 1E-07 47.8 8.4 66 110-180 3-68 (76)
91 PRK11152 ilvM acetolactate syn 97.0 0.0046 9.9E-08 47.8 7.7 34 337-370 4-37 (76)
92 PRK08178 acetolactate synthase 96.9 0.0065 1.4E-07 48.9 8.7 68 107-180 6-73 (96)
93 cd04888 ACT_PheB-BS C-terminal 96.9 0.0075 1.6E-07 45.9 8.9 63 111-178 2-65 (76)
94 cd04931 ACT_PAH ACT domain of 96.9 0.0054 1.2E-07 49.1 8.0 69 338-410 16-85 (90)
95 cd04877 ACT_TyrR N-terminal AC 96.9 0.0063 1.4E-07 46.6 8.2 56 247-312 3-58 (74)
96 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0061 1.3E-07 45.4 7.9 61 23-83 1-66 (73)
97 cd04880 ACT_AAAH-PDT-like ACT 96.9 0.0059 1.3E-07 46.8 7.8 63 340-406 3-67 (75)
98 PRK13562 acetolactate synthase 96.9 0.0064 1.4E-07 47.7 7.9 66 111-180 4-69 (84)
99 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0052 1.1E-07 45.5 7.2 44 339-386 2-47 (71)
100 TIGR00119 acolac_sm acetolacta 96.8 0.0059 1.3E-07 54.1 8.4 64 337-409 2-65 (157)
101 cd04908 ACT_Bt0572_1 N-termina 96.8 0.0095 2E-07 44.5 8.2 58 21-83 2-59 (66)
102 cd04877 ACT_TyrR N-terminal AC 96.8 0.011 2.4E-07 45.2 8.6 34 111-144 2-35 (74)
103 cd04902 ACT_3PGDH-xct C-termin 96.8 0.0051 1.1E-07 46.4 6.5 59 340-405 3-61 (73)
104 cd04909 ACT_PDH-BS C-terminal 96.7 0.014 3E-07 43.7 8.8 48 110-157 2-50 (69)
105 cd04905 ACT_CM-PDT C-terminal 96.7 0.009 1.9E-07 46.4 7.8 64 338-405 3-68 (80)
106 cd04904 ACT_AAAH ACT domain of 96.7 0.0074 1.6E-07 46.4 7.0 49 339-391 3-51 (74)
107 TIGR00119 acolac_sm acetolacta 96.7 0.015 3.3E-07 51.4 9.8 65 110-180 2-67 (157)
108 cd04908 ACT_Bt0572_1 N-termina 96.7 0.0085 1.9E-07 44.7 7.1 44 110-156 2-45 (66)
109 cd04888 ACT_PheB-BS C-terminal 96.7 0.013 2.9E-07 44.5 8.3 61 246-312 2-63 (76)
110 cd04889 ACT_PDH-BS-like C-term 96.7 0.0073 1.6E-07 43.4 6.4 46 23-68 1-47 (56)
111 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.016 3.4E-07 43.8 8.7 46 111-156 2-48 (79)
112 CHL00100 ilvH acetohydroxyacid 96.6 0.014 3.1E-07 52.4 9.5 66 110-181 3-69 (174)
113 PRK11895 ilvH acetolactate syn 96.6 0.0098 2.1E-07 52.8 8.3 64 337-409 3-66 (161)
114 cd04929 ACT_TPH ACT domain of 96.6 0.0081 1.8E-07 46.3 6.8 64 339-406 3-66 (74)
115 cd04905 ACT_CM-PDT C-terminal 96.6 0.025 5.4E-07 43.9 9.7 50 110-159 2-51 (80)
116 PRK11895 ilvH acetolactate syn 96.6 0.019 4.1E-07 51.0 9.9 66 110-181 3-69 (161)
117 PRK11152 ilvM acetolactate syn 96.6 0.017 3.8E-07 44.6 8.4 64 110-180 4-68 (76)
118 cd04878 ACT_AHAS N-terminal AC 96.6 0.023 5E-07 42.1 9.0 62 111-178 2-64 (72)
119 cd04909 ACT_PDH-BS C-terminal 96.6 0.014 3.1E-07 43.6 7.8 34 245-278 2-35 (69)
120 PRK08577 hypothetical protein; 96.5 0.042 9.1E-07 47.4 11.6 76 8-83 44-122 (136)
121 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.018 3.8E-07 43.6 8.3 61 246-313 2-64 (79)
122 PF13710 ACT_5: ACT domain; PD 96.5 0.0048 1E-07 46.0 4.8 56 345-405 1-56 (63)
123 cd04901 ACT_3PGDH C-terminal A 96.5 0.0031 6.7E-08 47.1 3.8 58 339-405 2-59 (69)
124 cd04874 ACT_Af1403 N-terminal 96.5 0.026 5.5E-07 42.0 8.8 60 22-83 2-62 (72)
125 PRK08577 hypothetical protein; 96.5 0.025 5.4E-07 48.8 9.7 69 239-312 51-120 (136)
126 cd04879 ACT_3PGDH-like ACT_3PG 96.5 0.012 2.6E-07 43.4 6.8 45 112-156 2-47 (71)
127 PRK04435 hypothetical protein; 96.4 0.037 8E-07 48.5 10.5 74 101-178 61-134 (147)
128 cd04903 ACT_LSD C-terminal ACT 96.4 0.028 6.1E-07 41.6 8.4 45 112-156 2-47 (71)
129 cd04882 ACT_Bt0572_2 C-termina 96.4 0.018 3.9E-07 42.2 7.2 45 112-156 2-47 (65)
130 cd04902 ACT_3PGDH-xct C-termin 96.4 0.019 4.1E-07 43.2 7.4 47 112-158 2-49 (73)
131 PRK04435 hypothetical protein; 96.3 0.035 7.5E-07 48.7 9.8 78 5-83 54-134 (147)
132 cd04874 ACT_Af1403 N-terminal 96.3 0.027 5.7E-07 41.9 7.7 46 111-156 2-47 (72)
133 cd04903 ACT_LSD C-terminal ACT 96.2 0.033 7.1E-07 41.2 8.1 58 23-83 2-61 (71)
134 cd04882 ACT_Bt0572_2 C-termina 96.1 0.027 5.8E-07 41.3 7.0 55 23-83 2-59 (65)
135 cd04878 ACT_AHAS N-terminal AC 96.1 0.047 1E-06 40.4 8.4 61 22-83 2-64 (72)
136 PRK06635 aspartate kinase; Rev 96.0 0.7 1.5E-05 47.2 19.3 108 109-274 262-373 (404)
137 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.056 1.2E-06 38.9 8.4 45 112-156 1-45 (71)
138 cd04901 ACT_3PGDH C-terminal A 96.0 0.0091 2E-07 44.5 3.9 44 112-156 2-45 (69)
139 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.045 9.8E-07 39.4 7.6 59 23-81 1-60 (71)
140 cd02116 ACT ACT domains are co 95.9 0.063 1.4E-06 36.6 8.0 33 112-144 1-33 (60)
141 cd04884 ACT_CBS C-terminal ACT 95.9 0.055 1.2E-06 41.0 8.0 33 112-144 2-34 (72)
142 cd04883 ACT_AcuB C-terminal AC 95.8 0.098 2.1E-06 39.2 9.1 60 21-83 2-63 (72)
143 cd04930 ACT_TH ACT domain of t 95.8 0.028 6.1E-07 47.1 6.4 64 338-405 43-106 (115)
144 cd04884 ACT_CBS C-terminal ACT 95.8 0.054 1.2E-06 41.0 7.5 60 23-83 2-65 (72)
145 COG0527 LysC Aspartokinases [A 95.8 1.1 2.4E-05 46.5 19.2 110 241-370 304-420 (447)
146 PRK11899 prephenate dehydratas 95.7 0.042 9E-07 53.3 7.9 64 338-405 196-261 (279)
147 cd02116 ACT ACT domains are co 95.5 0.092 2E-06 35.7 7.5 33 23-55 1-33 (60)
148 cd04883 ACT_AcuB C-terminal AC 95.5 0.18 3.9E-06 37.8 9.6 47 110-156 2-49 (72)
149 TIGR00719 sda_beta L-serine de 95.5 0.043 9.3E-07 50.9 7.2 59 337-402 149-207 (208)
150 cd04871 ACT_PSP_2 ACT domains 95.4 0.014 3E-07 46.1 3.0 28 246-273 1-29 (84)
151 cd04898 ACT_ACR-like_4 ACT dom 95.4 0.027 5.9E-07 42.9 4.4 66 247-312 3-70 (77)
152 PRK07334 threonine dehydratase 95.3 0.1 2.2E-06 53.4 10.0 66 108-178 325-394 (403)
153 cd04871 ACT_PSP_2 ACT domains 95.2 0.017 3.7E-07 45.6 2.9 61 23-85 2-73 (84)
154 PF13710 ACT_5: ACT domain; PD 95.0 0.18 3.8E-06 37.5 7.8 56 29-85 1-58 (63)
155 cd04931 ACT_PAH ACT domain of 95.0 0.27 5.9E-06 39.3 9.2 71 108-181 13-83 (90)
156 PRK08210 aspartate kinase I; R 94.7 0.78 1.7E-05 46.9 14.2 102 242-368 269-374 (403)
157 PRK07334 threonine dehydratase 94.7 0.21 4.6E-06 51.1 10.0 66 244-314 326-394 (403)
158 PRK10872 relA (p)ppGpp synthet 94.6 0.23 5E-06 54.3 10.6 66 243-313 665-730 (743)
159 TIGR00656 asp_kin_monofn aspar 94.5 4.3 9.3E-05 41.3 19.1 105 108-273 259-369 (401)
160 TIGR00656 asp_kin_monofn aspar 94.4 0.93 2E-05 46.2 14.1 107 242-368 258-372 (401)
161 PRK06291 aspartate kinase; Pro 94.4 0.82 1.8E-05 47.7 13.8 109 242-370 319-435 (465)
162 cd04880 ACT_AAAH-PDT-like ACT 94.2 0.54 1.2E-05 35.7 9.1 47 112-158 2-48 (75)
163 PRK11790 D-3-phosphoglycerate 94.2 0.075 1.6E-06 54.5 5.5 62 335-405 337-398 (409)
164 PRK10872 relA (p)ppGpp synthet 94.1 0.25 5.5E-06 54.1 9.5 66 108-178 665-731 (743)
165 COG1707 ACT domain-containing 94.1 0.23 4.9E-06 43.9 7.3 60 22-83 4-65 (218)
166 PRK10622 pheA bifunctional cho 93.9 0.21 4.5E-06 50.8 8.0 64 338-405 299-364 (386)
167 PRK06635 aspartate kinase; Rev 93.9 0.7 1.5E-05 47.2 12.0 110 243-370 261-377 (404)
168 PLN02551 aspartokinase 93.9 1.1 2.3E-05 47.5 13.4 114 241-370 363-481 (521)
169 PRK11092 bifunctional (p)ppGpp 93.7 0.32 6.9E-06 53.2 9.4 66 108-178 625-690 (702)
170 COG0077 PheA Prephenate dehydr 93.4 0.33 7.1E-06 46.9 7.9 64 338-405 196-261 (279)
171 PRK11092 bifunctional (p)ppGpp 93.4 0.54 1.2E-05 51.4 10.5 72 234-312 615-688 (702)
172 TIGR00719 sda_beta L-serine de 93.0 0.52 1.1E-05 43.7 8.5 52 105-156 144-196 (208)
173 PRK11790 D-3-phosphoglycerate 92.7 0.55 1.2E-05 48.2 9.0 49 107-156 336-384 (409)
174 TIGR00691 spoT_relA (p)ppGpp s 92.7 0.54 1.2E-05 51.4 9.4 66 107-177 608-673 (683)
175 PF13840 ACT_7: ACT domain ; P 92.7 0.59 1.3E-05 34.8 6.8 35 242-276 4-42 (65)
176 PRK11899 prephenate dehydratas 92.7 0.81 1.8E-05 44.4 9.6 53 244-298 194-247 (279)
177 cd04885 ACT_ThrD-I Tandem C-te 92.5 0.7 1.5E-05 34.5 7.2 60 248-314 2-61 (68)
178 TIGR00691 spoT_relA (p)ppGpp s 92.5 0.85 1.8E-05 49.9 10.6 63 243-312 609-672 (683)
179 PRK09034 aspartate kinase; Rev 92.5 1.8 3.9E-05 45.0 12.5 111 242-370 306-422 (454)
180 PRK08210 aspartate kinase I; R 92.5 6.1 0.00013 40.3 16.3 99 19-139 270-372 (403)
181 PRK09436 thrA bifunctional asp 92.3 1.7 3.6E-05 48.7 12.7 112 242-369 313-432 (819)
182 PRK09181 aspartate kinase; Val 92.3 2.9 6.4E-05 43.7 13.8 107 242-370 327-438 (475)
183 COG0317 SpoT Guanosine polypho 92.1 0.82 1.8E-05 49.6 9.6 74 233-312 615-689 (701)
184 PRK09084 aspartate kinase III; 92.1 3.6 7.8E-05 42.7 14.1 107 241-364 303-415 (448)
185 cd04885 ACT_ThrD-I Tandem C-te 92.1 1.2 2.7E-05 33.2 8.0 29 113-142 2-30 (68)
186 PRK11898 prephenate dehydratas 92.0 0.38 8.1E-06 46.9 6.5 63 339-405 199-264 (283)
187 PF13840 ACT_7: ACT domain ; P 91.8 0.79 1.7E-05 34.1 6.6 46 107-158 4-53 (65)
188 cd04904 ACT_AAAH ACT domain of 91.7 1.3 2.9E-05 33.7 8.0 46 112-157 3-48 (74)
189 PRK06291 aspartate kinase; Pro 91.7 7.9 0.00017 40.4 16.3 111 19-144 320-436 (465)
190 TIGR00657 asp_kinases aspartat 91.6 5.5 0.00012 41.2 14.9 109 242-370 300-415 (441)
191 PRK06382 threonine dehydratase 91.6 1.3 2.9E-05 45.3 10.2 69 105-178 326-398 (406)
192 COG1707 ACT domain-containing 91.3 0.66 1.4E-05 41.0 6.5 49 246-296 4-52 (218)
193 COG0077 PheA Prephenate dehydr 91.2 1.2 2.5E-05 43.1 8.7 54 243-298 193-247 (279)
194 TIGR01327 PGDH D-3-phosphoglyc 91.0 0.36 7.9E-06 51.1 5.6 60 339-405 454-513 (525)
195 PRK09034 aspartate kinase; Rev 91.0 9.8 0.00021 39.6 16.0 106 20-142 308-421 (454)
196 PRK13581 D-3-phosphoglycerate 90.6 0.54 1.2E-05 49.9 6.4 60 339-405 455-514 (526)
197 cd04929 ACT_TPH ACT domain of 90.0 1.3 2.9E-05 33.9 6.5 47 112-158 3-49 (74)
198 PRK08818 prephenate dehydrogen 89.6 0.71 1.5E-05 46.7 6.1 51 335-390 294-345 (370)
199 TIGR01270 Trp_5_monoox tryptop 89.4 0.85 1.8E-05 47.0 6.4 66 337-405 32-97 (464)
200 PLN02551 aspartokinase 89.4 10 0.00023 40.2 14.7 113 19-144 365-482 (521)
201 cd04906 ACT_ThrD-I_1 First of 89.1 4.1 8.9E-05 31.8 8.9 29 111-141 3-31 (85)
202 PRK09181 aspartate kinase; Val 89.1 19 0.00041 37.8 16.3 105 19-142 328-437 (475)
203 KOG2663 Acetolactate synthase, 89.0 0.64 1.4E-05 43.8 4.7 48 336-387 77-124 (309)
204 COG0317 SpoT Guanosine polypho 88.6 2.2 4.8E-05 46.4 9.2 45 105-150 623-667 (701)
205 COG0440 IlvH Acetolactate synt 88.4 1.7 3.7E-05 38.5 6.8 67 110-181 5-71 (163)
206 PRK09436 thrA bifunctional asp 88.0 30 0.00065 38.9 17.9 110 107-273 313-428 (819)
207 PRK06382 threonine dehydratase 87.9 2.5 5.5E-05 43.2 8.9 64 19-83 329-398 (406)
208 PRK12483 threonine dehydratase 87.9 27 0.00058 37.1 16.6 149 19-178 344-502 (521)
209 TIGR01268 Phe4hydrox_tetr phen 87.6 1.7 3.7E-05 44.6 7.2 65 338-406 18-83 (436)
210 COG0440 IlvH Acetolactate synt 87.5 17 0.00037 32.3 12.4 68 245-318 5-72 (163)
211 cd04906 ACT_ThrD-I_1 First of 87.3 4.6 9.9E-05 31.6 8.1 61 246-314 3-64 (85)
212 TIGR00657 asp_kinases aspartat 87.2 39 0.00085 34.9 18.7 33 243-275 377-412 (441)
213 KOG2663 Acetolactate synthase, 87.0 1.1 2.5E-05 42.1 5.1 66 108-180 76-143 (309)
214 PLN02317 arogenate dehydratase 86.2 2.8 6.1E-05 42.4 7.9 58 337-397 284-354 (382)
215 cd04935 ACT_AKiii-DAPDC_1 ACT 85.6 8.7 0.00019 29.3 8.7 56 252-314 12-67 (75)
216 cd04930 ACT_TH ACT domain of t 85.4 3.2 6.9E-05 34.8 6.6 49 109-157 41-89 (115)
217 TIGR01127 ilvA_1Cterm threonin 85.2 7.4 0.00016 39.3 10.5 68 106-178 302-373 (380)
218 PRK09466 metL bifunctional asp 85.1 17 0.00038 40.6 14.1 108 242-370 315-428 (810)
219 COG2150 Predicted regulator of 84.7 1.6 3.5E-05 38.4 4.6 35 19-53 94-128 (167)
220 TIGR01127 ilvA_1Cterm threonin 84.7 2.6 5.7E-05 42.6 7.0 34 338-371 307-340 (380)
221 cd04913 ACT_AKii-LysC-BS-like_ 84.5 10 0.00022 27.8 8.6 27 116-142 9-35 (75)
222 PRK13581 D-3-phosphoglycerate 84.5 2.6 5.7E-05 44.7 7.1 51 106-156 449-500 (526)
223 COG0527 LysC Aspartokinases [A 84.3 56 0.0012 34.0 16.7 108 18-141 305-418 (447)
224 PRK08198 threonine dehydratase 84.3 8.7 0.00019 39.2 10.6 39 105-143 323-361 (404)
225 PRK06545 prephenate dehydrogen 84.0 3 6.5E-05 41.9 7.0 39 17-55 287-325 (359)
226 cd04891 ACT_AK-LysC-DapG-like_ 83.9 5.3 0.00012 27.9 6.5 41 116-156 8-48 (61)
227 PRK06545 prephenate dehydrogen 83.6 3.4 7.3E-05 41.5 7.2 37 242-278 288-324 (359)
228 PRK10622 pheA bifunctional cho 83.2 5.7 0.00012 40.5 8.6 51 108-158 296-346 (386)
229 PRK06349 homoserine dehydrogen 82.5 6.1 0.00013 40.7 8.7 52 107-159 346-397 (426)
230 PRK08961 bifunctional aspartat 82.2 17 0.00037 41.1 12.6 108 241-367 319-432 (861)
231 cd04922 ACT_AKi-HSDH-ThrA_2 AC 82.2 16 0.00034 26.3 8.6 30 245-274 2-34 (66)
232 PLN02550 threonine dehydratase 82.0 61 0.0013 35.0 16.1 145 20-178 417-572 (591)
233 cd04932 ACT_AKiii-LysC-EC_1 AC 81.0 13 0.00029 28.3 8.0 31 110-140 2-35 (75)
234 PRK08841 aspartate kinase; Val 80.2 17 0.00036 37.2 10.8 97 242-370 256-352 (392)
235 cd04935 ACT_AKiii-DAPDC_1 ACT 80.1 17 0.00036 27.8 8.3 56 117-178 12-67 (75)
236 TIGR01327 PGDH D-3-phosphoglyc 80.1 3.7 8.1E-05 43.5 6.3 50 107-156 449-499 (525)
237 PRK06349 homoserine dehydrogen 79.8 3.8 8.3E-05 42.2 6.1 37 334-370 346-382 (426)
238 PRK08198 threonine dehydratase 79.3 11 0.00023 38.5 9.1 36 20-55 327-362 (404)
239 COG4492 PheB ACT domain-contai 78.8 17 0.00036 31.2 8.4 58 102-159 65-122 (150)
240 COG3978 Acetolactate synthase 78.2 21 0.00046 27.7 8.0 66 109-181 3-69 (86)
241 cd04890 ACT_AK-like_1 ACT doma 78.2 15 0.00032 26.4 7.2 23 252-274 11-33 (62)
242 COG2150 Predicted regulator of 77.7 6.8 0.00015 34.6 6.0 61 338-405 97-157 (167)
243 PRK08818 prephenate dehydrogen 77.3 9.7 0.00021 38.6 8.0 51 19-70 294-345 (370)
244 cd04912 ACT_AKiii-LysC-EC-like 76.7 24 0.00051 26.7 8.3 29 245-273 2-33 (75)
245 cd04937 ACT_AKi-DapG-BS_2 ACT 75.9 28 0.0006 25.3 8.3 29 245-273 2-33 (64)
246 COG3978 Acetolactate synthase 75.4 23 0.00049 27.6 7.5 64 20-85 3-68 (86)
247 cd04919 ACT_AK-Hom3_2 ACT doma 75.0 28 0.00061 25.0 8.7 31 245-275 2-35 (66)
248 PRK09084 aspartate kinase III; 74.6 40 0.00086 35.0 11.9 101 19-135 305-413 (448)
249 TIGR01270 Trp_5_monoox tryptop 74.5 12 0.00026 38.7 7.8 56 241-298 28-85 (464)
250 PRK05925 aspartate kinase; Pro 74.2 69 0.0015 33.3 13.4 108 242-370 298-408 (440)
251 PRK09224 threonine dehydratase 74.1 87 0.0019 33.1 14.4 117 242-370 326-456 (504)
252 COG4492 PheB ACT domain-contai 72.6 24 0.00052 30.2 7.8 49 18-67 70-120 (150)
253 PRK10820 DNA-binding transcrip 72.2 4.3 9.4E-05 43.0 4.2 33 338-370 2-34 (520)
254 PLN02317 arogenate dehydratase 72.2 23 0.00051 35.9 9.1 53 244-298 283-350 (382)
255 PRK09466 metL bifunctional asp 71.4 1.4E+02 0.0031 33.5 15.9 103 19-139 316-424 (810)
256 PRK12483 threonine dehydratase 71.3 83 0.0018 33.4 13.4 129 241-385 342-484 (521)
257 cd04932 ACT_AKiii-LysC-EC_1 AC 70.4 35 0.00075 26.0 7.8 26 251-278 11-36 (75)
258 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.4 36 0.00079 24.3 8.7 33 110-142 2-37 (66)
259 cd04890 ACT_AK-like_1 ACT doma 70.0 31 0.00067 24.6 7.2 50 345-407 12-61 (62)
260 PRK09224 threonine dehydratase 69.2 83 0.0018 33.2 12.9 120 20-142 328-455 (504)
261 PRK08961 bifunctional aspartat 68.2 51 0.0011 37.3 11.7 103 19-137 321-429 (861)
262 cd04924 ACT_AK-Arch_2 ACT doma 67.2 43 0.00092 23.8 8.6 30 246-275 3-35 (66)
263 PLN02550 threonine dehydratase 65.3 1.2E+02 0.0026 32.8 13.2 116 242-368 415-543 (591)
264 cd04923 ACT_AK-LysC-DapG-like_ 64.9 45 0.00098 23.3 8.2 29 246-274 2-33 (63)
265 PRK08526 threonine dehydratase 64.6 47 0.001 34.0 9.7 38 105-142 322-359 (403)
266 cd04937 ACT_AKi-DapG-BS_2 ACT 64.1 53 0.0011 23.8 8.7 33 110-144 2-37 (64)
267 PF05088 Bac_GDH: Bacterial NA 63.1 95 0.0021 37.3 12.8 74 336-410 489-568 (1528)
268 COG3283 TyrR Transcriptional r 62.8 18 0.00039 36.5 6.0 59 338-409 2-60 (511)
269 cd04868 ACT_AK-like ACT domain 62.5 18 0.00038 24.8 4.5 32 339-370 3-37 (60)
270 PRK00907 hypothetical protein; 62.4 36 0.00078 27.3 6.6 65 244-313 17-83 (92)
271 cd04912 ACT_AKiii-LysC-EC-like 61.5 67 0.0014 24.1 8.6 63 110-178 2-67 (75)
272 cd04919 ACT_AK-Hom3_2 ACT doma 61.3 58 0.0013 23.3 8.7 33 110-142 2-37 (66)
273 cd04913 ACT_AKii-LysC-BS-like_ 61.1 26 0.00057 25.4 5.5 42 27-68 9-51 (75)
274 PRK11898 prephenate dehydratas 61.1 62 0.0013 31.4 9.4 50 108-157 195-245 (283)
275 PRK08526 threonine dehydratase 60.4 21 0.00046 36.5 6.4 35 337-371 327-361 (403)
276 COG3603 Uncharacterized conser 60.3 68 0.0015 27.0 8.0 43 230-278 53-98 (128)
277 cd04868 ACT_AK-like ACT domain 60.1 51 0.0011 22.3 7.9 30 246-275 2-34 (60)
278 cd04892 ACT_AK-like_2 ACT doma 56.3 25 0.00055 24.5 4.5 33 338-370 2-37 (65)
279 cd04934 ACT_AK-Hom3_1 CT domai 55.9 66 0.0014 24.3 6.9 53 253-314 13-65 (73)
280 cd04891 ACT_AK-LysC-DapG-like_ 55.0 18 0.00038 25.1 3.5 27 344-370 9-35 (61)
281 TIGR01124 ilvA_2Cterm threonin 54.5 1.7E+02 0.0036 31.0 12.0 118 241-370 322-452 (499)
282 PRK00907 hypothetical protein; 54.1 34 0.00073 27.4 5.2 51 20-70 17-71 (92)
283 cd04916 ACT_AKiii-YclM-BS_2 AC 53.6 78 0.0017 22.4 8.5 30 246-275 3-35 (66)
284 cd04924 ACT_AK-Arch_2 ACT doma 53.5 78 0.0017 22.4 8.8 33 110-142 2-37 (66)
285 TIGR01268 Phe4hydrox_tetr phen 51.5 90 0.002 32.3 9.0 50 109-158 16-65 (436)
286 PRK14646 hypothetical protein; 51.2 73 0.0016 28.1 7.4 56 349-409 9-64 (155)
287 cd04921 ACT_AKi-HSDH-ThrA-like 50.9 1E+02 0.0022 23.0 8.9 31 245-275 2-35 (80)
288 PRK14630 hypothetical protein; 50.4 1.5E+02 0.0032 25.7 9.1 61 253-318 6-67 (143)
289 TIGR02079 THD1 threonine dehyd 49.8 1.5E+02 0.0032 30.3 10.5 39 105-143 321-359 (409)
290 cd04934 ACT_AK-Hom3_1 CT domai 49.5 73 0.0016 24.1 6.3 54 117-178 12-65 (73)
291 TIGR01269 Tyr_3_monoox tyrosin 49.4 48 0.001 34.2 6.6 66 338-406 41-107 (457)
292 PRK10820 DNA-binding transcrip 49.1 29 0.00063 36.8 5.3 34 111-144 2-35 (520)
293 cd04936 ACT_AKii-LysC-BS-like_ 48.8 89 0.0019 21.7 8.3 29 247-275 3-34 (63)
294 cd04918 ACT_AK1-AT_2 ACT domai 48.6 1E+02 0.0022 22.3 8.5 29 246-274 3-33 (65)
295 cd04933 ACT_AK1-AT_1 ACT domai 48.4 31 0.00067 26.6 4.0 24 117-140 12-35 (78)
296 PF05088 Bac_GDH: Bacterial NA 48.3 1.4E+02 0.003 36.1 10.9 79 105-183 485-568 (1528)
297 cd04914 ACT_AKi-DapG-BS_1 ACT 47.8 31 0.00068 25.5 3.9 30 111-140 3-33 (67)
298 COG3603 Uncharacterized conser 46.6 19 0.00041 30.2 2.7 32 339-370 66-100 (128)
299 cd04923 ACT_AK-LysC-DapG-like_ 46.2 45 0.00098 23.3 4.5 32 339-370 3-37 (63)
300 TIGR02079 THD1 threonine dehyd 46.2 1.4E+02 0.003 30.6 9.6 69 241-314 322-390 (409)
301 PRK08639 threonine dehydratase 44.8 1.7E+02 0.0036 30.1 10.0 38 105-142 332-369 (420)
302 COG3283 TyrR Transcriptional r 44.5 59 0.0013 33.0 6.2 32 247-278 3-34 (511)
303 PRK14633 hypothetical protein; 43.9 2.2E+02 0.0048 24.8 9.5 89 257-364 6-97 (150)
304 cd04916 ACT_AKiii-YclM-BS_2 AC 42.4 1.2E+02 0.0026 21.4 8.8 32 111-142 3-37 (66)
305 PRK08639 threonine dehydratase 42.3 1.5E+02 0.0033 30.4 9.3 69 241-314 333-401 (420)
306 cd04892 ACT_AK-like_2 ACT doma 42.1 1.1E+02 0.0024 21.0 8.6 30 246-275 2-34 (65)
307 PRK14636 hypothetical protein; 41.8 1.2E+02 0.0026 27.3 7.4 57 348-409 6-62 (176)
308 PRK14638 hypothetical protein; 41.0 2.5E+02 0.0053 24.6 10.7 89 257-362 10-101 (150)
309 PRK14640 hypothetical protein; 40.6 2.5E+02 0.0054 24.5 10.6 93 256-364 7-100 (152)
310 PRK14634 hypothetical protein; 40.6 1.2E+02 0.0027 26.6 7.1 56 349-409 9-64 (155)
311 KOG0456 Aspartate kinase [Amin 39.9 2.1E+02 0.0045 29.3 9.2 55 252-318 482-536 (559)
312 PRK02047 hypothetical protein; 39.6 1E+02 0.0022 24.6 5.9 50 20-69 16-69 (91)
313 PF02576 DUF150: Uncharacteris 39.5 1.9E+02 0.004 24.8 8.0 73 261-349 2-77 (141)
314 TIGR01124 ilvA_2Cterm threonin 39.5 3.3E+02 0.0071 28.8 11.4 134 19-156 324-467 (499)
315 cd04933 ACT_AK1-AT_1 ACT domai 39.5 41 0.0009 25.9 3.5 27 344-370 12-38 (78)
316 PRK14639 hypothetical protein; 38.8 2.6E+02 0.0056 24.1 9.9 72 261-347 3-76 (140)
317 PRK05974 phosphoribosylformylg 38.2 1.5E+02 0.0034 22.7 6.6 56 344-410 8-68 (80)
318 PRK14632 hypothetical protein; 37.1 3.1E+02 0.0067 24.6 9.4 87 257-362 10-99 (172)
319 cd04936 ACT_AKii-LysC-BS-like_ 37.0 1.4E+02 0.0031 20.6 8.0 30 112-141 3-35 (63)
320 PLN02828 formyltetrahydrofolat 36.3 3.3E+02 0.0071 26.3 9.9 104 37-146 1-107 (268)
321 cd04918 ACT_AK1-AT_2 ACT domai 35.5 1.7E+02 0.0037 21.1 8.4 34 111-144 3-38 (65)
322 PRK14645 hypothetical protein; 35.0 1.9E+02 0.0041 25.4 7.4 55 349-408 11-65 (154)
323 cd04920 ACT_AKiii-DAPDC_2 ACT 34.3 78 0.0017 22.9 4.2 33 338-370 2-37 (63)
324 cd04921 ACT_AKi-HSDH-ThrA-like 34.2 1.9E+02 0.0042 21.4 9.0 33 110-142 2-37 (80)
325 PRK00341 hypothetical protein; 33.3 1.4E+02 0.003 23.8 5.7 48 21-69 18-69 (91)
326 PRK00341 hypothetical protein; 32.9 1.8E+02 0.004 23.1 6.4 64 245-313 18-82 (91)
327 cd04920 ACT_AKiii-DAPDC_2 ACT 31.8 2E+02 0.0043 20.7 8.3 28 246-273 2-32 (63)
328 cd07253 Glo_EDI_BRP_like_2 Thi 31.2 99 0.0021 24.5 4.8 43 350-395 79-121 (125)
329 PF04083 Abhydro_lipase: Parti 29.9 1.6E+02 0.0035 21.7 5.2 33 127-160 2-34 (63)
330 PRK02047 hypothetical protein; 29.8 2.8E+02 0.0062 22.0 7.0 66 244-313 16-82 (91)
331 PRK08841 aspartate kinase; Val 28.8 3.1E+02 0.0068 27.9 8.9 32 242-273 316-347 (392)
332 PRK14646 hypothetical protein; 28.8 4E+02 0.0087 23.4 9.1 61 121-182 8-68 (155)
333 cd04914 ACT_AKi-DapG-BS_1 ACT 28.6 1E+02 0.0022 22.7 4.0 44 21-68 2-46 (67)
334 PF04083 Abhydro_lipase: Parti 27.9 1.5E+02 0.0032 21.9 4.7 32 38-70 2-34 (63)
335 PF13670 PepSY_2: Peptidase pr 27.6 1.2E+02 0.0026 23.2 4.5 39 350-395 31-69 (83)
336 PF00903 Glyoxalase: Glyoxalas 26.9 1.6E+02 0.0036 23.1 5.4 50 339-394 77-126 (128)
337 COG0779 Uncharacterized protei 26.8 4.4E+02 0.0096 23.2 8.7 89 31-137 8-102 (153)
338 cd07245 Glo_EDI_BRP_like_9 Thi 26.5 1.3E+02 0.0027 23.1 4.6 38 350-394 75-112 (114)
339 COG1828 PurS Phosphoribosylfor 26.2 2.7E+02 0.0058 21.9 6.0 59 340-410 5-69 (83)
340 PRK14632 hypothetical protein; 25.7 4.9E+02 0.011 23.3 9.2 89 33-137 10-101 (172)
341 KOG2797 Prephenate dehydratase 25.4 4.3E+02 0.0093 26.2 8.5 137 253-395 191-346 (377)
342 PF01571 GCV_T: Aminomethyltra 25.3 2.8E+02 0.006 24.9 7.2 104 243-354 6-115 (211)
343 cd04915 ACT_AK-Ectoine_2 ACT d 25.2 2.7E+02 0.0059 20.2 9.2 29 245-273 3-33 (66)
344 cd08357 Glo_EDI_BRP_like_18 Th 25.2 95 0.0021 24.8 3.7 45 349-395 77-121 (125)
345 cd04917 ACT_AKiii-LysC-EC_2 AC 25.2 2.6E+02 0.0056 19.9 7.8 28 245-272 2-32 (64)
346 COG0779 Uncharacterized protei 24.9 4.8E+02 0.01 22.9 9.0 91 256-364 9-102 (153)
347 PTZ00324 glutamate dehydrogena 24.8 3E+02 0.0064 31.7 8.3 48 115-162 239-286 (1002)
348 PRK14634 hypothetical protein; 24.8 4.8E+02 0.01 22.9 8.8 62 120-182 7-68 (155)
349 PRK06423 phosphoribosylformylg 24.5 2.2E+02 0.0048 21.4 5.3 49 345-410 9-62 (73)
350 PF12681 Glyoxalase_2: Glyoxal 24.4 1.7E+02 0.0038 22.5 5.0 40 349-394 66-105 (108)
351 KOG0456 Aspartate kinase [Amin 24.0 1.3E+02 0.0029 30.6 4.9 116 231-368 384-506 (559)
352 PRK04998 hypothetical protein; 23.9 2.3E+02 0.005 22.2 5.5 49 20-68 15-65 (88)
353 PF09876 DUF2103: Predicted me 23.8 1.7E+02 0.0037 24.0 4.7 63 231-315 40-102 (103)
354 PF02878 PGM_PMM_I: Phosphoglu 23.7 2.8E+02 0.0061 23.3 6.4 57 122-178 56-133 (137)
355 PRK14633 hypothetical protein; 23.2 5E+02 0.011 22.6 9.4 89 33-137 6-97 (150)
356 PTZ00324 glutamate dehydrogena 22.9 3.2E+02 0.0069 31.5 8.1 66 5-71 214-285 (1002)
357 PRK00092 ribosome maturation p 22.7 5.1E+02 0.011 22.5 9.2 70 33-117 9-81 (154)
358 PRK14637 hypothetical protein; 21.0 4.2E+02 0.0092 23.1 7.1 56 348-410 9-64 (151)
359 PRK14630 hypothetical protein; 20.8 4.4E+02 0.0095 22.8 7.0 53 349-408 10-62 (143)
360 cd07266 HPCD_N_class_II N-term 20.7 1E+02 0.0022 24.7 2.9 42 349-395 73-114 (121)
361 PRK14640 hypothetical protein; 20.6 4.3E+02 0.0093 23.0 7.1 52 351-409 10-61 (152)
362 cd09013 BphC-JF8_N_like N-term 20.6 98 0.0021 24.9 2.9 41 348-395 74-114 (121)
363 PRK06724 hypothetical protein; 20.3 1.4E+02 0.003 24.9 3.8 44 349-395 76-119 (128)
364 PRK14636 hypothetical protein; 20.1 6.4E+02 0.014 22.6 9.1 62 120-182 5-66 (176)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=3.5e-29 Score=274.18 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=159.2
Q ss_pred ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
+.+..+.+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++++++++|++.|.++|
T Consensus 669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL 748 (854)
T PRK01759 669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKAL 748 (854)
T ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999999899999999999999888777788999999999999
Q ss_pred cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 260 (411)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~ 260 (411)
.+.. .. ..++ .+. +...++.+||+|.|||+.++.+|+|+|.++||||||++
T Consensus 749 ~~~~----------~~---------~~~~-~~~---------~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~ 799 (854)
T PRK01759 749 NTNK----------LK---------KLNL-EEN---------HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ 799 (854)
T ss_pred cCCC----------Cc---------chhc-ccc---------ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence 8632 00 0000 000 01123567999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 316 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 316 (411)
|+++|.++|++|+.|+|+ |.|+++.|+|||+ .+|.+++++++ ++|+++|.++|
T Consensus 800 I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 800 VSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999 8999999999996 78999997655 99999998776
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=6.4e-29 Score=273.03 Aligned_cols=187 Identities=21% Similarity=0.226 Sum_probs=161.4
Q ss_pred ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
+.+..+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++++++++|++.|.++|
T Consensus 693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999999999999999889999999999999987767789999999999999
Q ss_pred cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 260 (411)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~ 260 (411)
.+.. . .. +..++.. .+..++.+||+|.|+|+.++.+|+|+|.++||||||++
T Consensus 773 ~~~~-~--------~~--------~~~~~~~-----------~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~ 824 (884)
T PRK05007 773 TQSS-P--------QP--------PKPRRLP-----------AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLAR 824 (884)
T ss_pred cCCC-C--------Cc--------ccccccc-----------cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence 7642 0 00 0011100 01123567999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
|+++|.++|++|++|+|+ |.|+++.|+|||+ .+|.+++ +++++.|+++|.+++..
T Consensus 825 I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 825 VGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 999999999999999999 8999999999996 7899999 67889999999988854
No 3
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.95 E-value=4.8e-26 Score=250.76 Aligned_cols=187 Identities=22% Similarity=0.274 Sum_probs=156.5
Q ss_pred cCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHH
Q 015208 102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL 180 (411)
Q Consensus 102 ~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L 180 (411)
.+..+.+.|+|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||++.+|.++ +++++++|++.|.++|
T Consensus 661 ~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 661 DGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred eccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 344557999999999999999999999999999999999999879999999999999988754 4567999999999999
Q ss_pred cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 260 (411)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~ 260 (411)
.+.. + . .+.... ....++ +..++.+||+|.|+|+.++.+|+|+|.|.||||||++
T Consensus 741 ~~~~-~----~-~~~~~~----~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~ 795 (850)
T TIGR01693 741 AGLA-K----D-PDTISA----RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLAR 795 (850)
T ss_pred cCCC-c----c-cccccc----ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHH
Confidence 8632 0 0 000000 000011 1123567999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 316 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 316 (411)
|+++|+++|++|.+|+|+ |.|+++.|+||++ ..|.++++ ++++.|+++|..++
T Consensus 796 i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 796 VGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999 8999999999997 67999997 78899999998775
No 4
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=246.61 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=157.3
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC--CHhHHHHHHHHHHHHHcccc
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM 184 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~--~~~~~~~l~~~L~~~L~~~~ 184 (411)
.+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|.++ +++++++|++.|.++|.+..
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999999999999999999999999999988753 45799999999999998642
Q ss_pred cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHH
Q 015208 185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT 264 (411)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~ 264 (411)
.. +.. ..++... ....+.+++.|.|+++.+.++|+|+|.+.||||||++|+++
T Consensus 782 -----~~--~~~---------~~~~~~~-----------~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~ 834 (895)
T PRK00275 782 -----DY--PTI---------IQRRVPR-----------QLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI 834 (895)
T ss_pred -----cc--chh---------hhhhhhh-----------hccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence 00 000 1111100 01134678999999999999999999999999999999999
Q ss_pred HHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208 265 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 319 (411)
Q Consensus 265 l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 319 (411)
|+++|+||.+|+|+ |.|+++.|+|||+ .+|.++++++++++|+++|..+|..+
T Consensus 835 L~~~~l~I~~AkI~--T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 835 FLEFDLSLQNAKIA--TLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHCCCEEEEeEEE--ecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 6799999999996 78999998888999999999988653
No 5
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.1e-25 Score=245.35 Aligned_cols=173 Identities=19% Similarity=0.272 Sum_probs=148.4
Q ss_pred cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHHHH
Q 015208 7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLLKK 79 (411)
Q Consensus 7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l~~ 79 (411)
+.|. ..+++..++++|+|+++||||||++||++|+.+|+||.+|+|+| ||. ++|+|+|.+++|. +|+.+++
T Consensus 689 p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~-alD~F~V~d~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 689 PLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGM-AMDTFIVLEPDGSPLSQDRHQVIRK 766 (884)
T ss_pred CeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCe-EEEEEEEECCCCCCCCHHHHHHHHH
Confidence 3444 55788889999999999999999999999999999999999977 555 9999999998863 5777889
Q ss_pred HHHhhCCCCCCcc---------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208 80 RLMGACPSCSSAS---------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 147 (411)
Q Consensus 80 ~L~~~l~~~~~~~---------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~ 147 (411)
.|++++.+..... .+++..+ .++|+.+..+|+|+|.++|||||||+|+++|+++|++|++|+|.| .+
T Consensus 767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T-~g 845 (884)
T PRK05007 767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT-IG 845 (884)
T ss_pred HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-cC
Confidence 9999886653211 1112222 278899999999999999999999999999999999999999999 99
Q ss_pred CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 148 GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
+++.|+|||++.+|.++++++++.|++.|.++|..
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999998888888889999999999864
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=4.2e-25 Score=241.56 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=153.6
Q ss_pred CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208 104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~ 183 (411)
....+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+.. +++++++++.|.++|.+.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence 445588999999999999999999999999999999999999999999999999998764 466888999999999874
Q ss_pred ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208 184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR 263 (411)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~ 263 (411)
. . . +... ..+.++ +..++.+||+|.|+|+.+.++|+|+|.+.||||||++|++
T Consensus 763 ~-~----~--~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~ 815 (869)
T PRK04374 763 L-Q----K--VRPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH 815 (869)
T ss_pred C-C----c--cccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence 2 0 0 0000 000111 1124578999999999999999999999999999999999
Q ss_pred HHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
+|+++|++|.+|+|+ |.|+++.|+|||+ .+|.+++++++ ++|+++|.+++.
T Consensus 816 ~l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 816 VLRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999999 7899999999996 78888887655 999999988874
No 7
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3.1e-25 Score=243.25 Aligned_cols=172 Identities=21% Similarity=0.210 Sum_probs=145.5
Q ss_pred cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCc-----cHHHHHHH
Q 015208 7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQT-----RWGLLKKR 80 (411)
Q Consensus 7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~-----~~~~l~~~ 80 (411)
+.|. ..+++..++++|+|+++||||||++||++|+.+|+||++|+|+| .+++++|+|+|.+++|. +|+.+++.
T Consensus 665 ~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~ 743 (854)
T PRK01759 665 LLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQA 743 (854)
T ss_pred CEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 3444 55888889999999999999999999999999999999999976 45559999999998873 57788889
Q ss_pred HHhhCCCCCCcce--------eeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCe
Q 015208 81 LMGACPSCSSASV--------VLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK 149 (411)
Q Consensus 81 L~~~l~~~~~~~~--------~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~ 149 (411)
|++++.+...... +++..+ .++|+.+..+|+|+|.++|||||||+|+++|+++|++|++|+|.| .+++
T Consensus 744 L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-~ger 822 (854)
T PRK01759 744 LTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-IGEK 822 (854)
T ss_pred HHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-cCce
Confidence 9999876542211 112222 278999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 150 VMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 150 ~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
+.|+|||++.+|.+++++..++|+++|.++|
T Consensus 823 v~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 823 AEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred EEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 9999999999888766555589999998876
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=9.9e-25 Score=239.06 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=153.4
Q ss_pred CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208 104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~ 183 (411)
....+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...+++++++|++.|.++|.++
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 44568899999999999999999999999999999999999999999999999998877556679999999999999874
Q ss_pred ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208 184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR 263 (411)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~ 263 (411)
. . . .. ...++.. .+...+..++.|.|+++.+.++|+|+|.++||||||++|++
T Consensus 753 ~-~----~---~~--------~~~~~~~-----------~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~ 805 (856)
T PRK03059 753 A-P----L---PE--------PSKGRLS-----------RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR 805 (856)
T ss_pred C-C----c---ch--------hhccccc-----------ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence 2 0 0 00 0111100 01123567899999999999999999999999999999999
Q ss_pred HHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
+|+.+|+||.+|+|+ |.|+++.|+|||+ +.++.+++++++|+++|..++.
T Consensus 806 ~L~~~~l~I~~AkI~--T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 806 VLAEHRVSVHTAKIN--TLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHCCCeEEEEEEe--ecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999 6799999999994 4446677889999999987763
No 9
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=9.4e-25 Score=238.85 Aligned_cols=174 Identities=21% Similarity=0.195 Sum_probs=145.6
Q ss_pred CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc---cHHHHHHH
Q 015208 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT---RWGLLKKR 80 (411)
Q Consensus 6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~---~~~~l~~~ 80 (411)
+++|+.....+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| ||. ++|+|+|.++.|. +|+++++.
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDA-IFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCE-EEEEEEEeCCCCCChHHHHHHHHH
Confidence 45566655577779999999999999999999999999999999999976 666 9999999998873 68889999
Q ss_pred HHhhCCCCCCcc---e-------eeeeccc---ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208 81 LMGACPSCSSAS---V-------VLYYRAE---MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 147 (411)
Q Consensus 81 L~~~l~~~~~~~---~-------~~~~~~~---~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~ 147 (411)
|++++.+..... . +++..++ +.+..+.++|+|+|++.||||||++|+++|+.+|+||++|+|+| .+
T Consensus 755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T-~g 833 (869)
T PRK04374 755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT-FG 833 (869)
T ss_pred HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe-cC
Confidence 999987743210 0 1222222 56778889999999999999999999999999999999999999 59
Q ss_pred CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 148 GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
++++|+|||++.+|.+.++++.+.|++.|.++|.
T Consensus 834 ~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 834 ERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 9999999999998876554444999999998885
No 10
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=9.1e-25 Score=240.34 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=145.2
Q ss_pred CcEEEEEecCCC---CCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-------c
Q 015208 6 DDVVIISQSDKE---GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-------R 73 (411)
Q Consensus 6 ~~~v~~~~~~~~---~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-------~ 73 (411)
+++|+ ..+.+. .++++|+|+++||||||+++|++|+.+|+||++|+|+| ||. ++|+|+|.+++|. +
T Consensus 688 ~~~v~-~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~-alD~F~V~d~~g~~~~~~~~r 765 (895)
T PRK00275 688 GPLVL-IKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQF-TLDTYIVLDDDGEPIGDNPAR 765 (895)
T ss_pred CCeEE-EEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCe-EEEEEEEeCCCCCCccchHHH
Confidence 44555 435454 58999999999999999999999999999999999965 665 9999999998763 5
Q ss_pred HHHHHHHHHhhCCCCCCcc----------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEE
Q 015208 74 WGLLKKRLMGACPSCSSAS----------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 140 (411)
Q Consensus 74 ~~~l~~~L~~~l~~~~~~~----------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A 140 (411)
|+.+++.|+++|.+..... ..++..+ .+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|
T Consensus 766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A 845 (895)
T PRK00275 766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845 (895)
T ss_pred HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence 7788899999987654210 0122212 25677888999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHHccc
Q 015208 141 KISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 141 ~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L~~~ 183 (411)
+|+|. +++++|+|||++.+|.++ +++++++|++.|.++|.+.
T Consensus 846 kI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 846 KIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99995 999999999999988764 5578999999999999763
No 11
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=239.26 Aligned_cols=190 Identities=23% Similarity=0.360 Sum_probs=159.8
Q ss_pred cCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHH
Q 015208 102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 102 ~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L 180 (411)
.+....+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.+ .+++++++|++.|.+++
T Consensus 725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34556689999999999999999999999999999999999998999999999999988765 46789999999999999
Q ss_pred cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD 260 (411)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~ 260 (411)
.+.. . + +.. ..++. + + ..+..++.++|+|.|+|+.+..+|+|+|.+.||||||++
T Consensus 805 ~~~~-~----~--~~~---------~~~r~-~------~--~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~ 859 (931)
T PRK05092 805 SGEV-R----L--PEA---------LAKRT-K------P--KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD 859 (931)
T ss_pred cCCC-C----C--ccc---------ccccc-C------c--cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence 7632 0 0 000 00100 0 0 001123567899999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
|+++|+++|+||.+|+|. |.|+++.|+|||+ .+|.++.+++.+++|+++|.++|..
T Consensus 860 I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 860 LTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred HHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999 7899999999996 7899999988899999999999865
No 12
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-24 Score=226.46 Aligned_cols=183 Identities=23% Similarity=0.227 Sum_probs=154.3
Q ss_pred CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208 104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~ 183 (411)
....+.+.|.|+++|+|.||+.+++.+...|+||++|+|+|+.+|+++|+|+|.+++|.++++.+...++..|.+++.+.
T Consensus 679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~ 758 (867)
T COG2844 679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSG 758 (867)
T ss_pred cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcC
Confidence 34447899999999999999999999999999999999999999999999999999998888888888888888888653
Q ss_pred ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208 184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR 263 (411)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~ 263 (411)
. . .+. ..++. ..+..++.++|+|.|.|..++.+|+|+|.+.||||||+++++
T Consensus 759 ~------~-~~~----------~~~r~-----------~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~ 810 (867)
T COG2844 759 K------A-QPP----------RRRRI-----------PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAG 810 (867)
T ss_pred C------C-CCc----------ccccc-----------CcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHH
Confidence 2 0 000 01111 112235788999999999999999999999999999999999
Q ss_pred HHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
+|++++++|.+|+|+ |.|++++|+|||+ ..|.+++ ++..+.+.+.|.+++.
T Consensus 811 v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 811 VFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred HHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 999999999999999 8999999999997 7899996 4566677777666553
No 13
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=6e-24 Score=232.93 Aligned_cols=171 Identities=22% Similarity=0.346 Sum_probs=141.6
Q ss_pred CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHHH
Q 015208 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLLK 78 (411)
Q Consensus 6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l~ 78 (411)
+++|+ ..+.+..+.++|+|+++||||||+++|++|+.+|+||++|+|+| ||. ++|+|+|.++.|. +|++++
T Consensus 665 ~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGY-ALDTFQVLDPEEDVHYRDIINLVE 742 (856)
T ss_pred CCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCe-EEEEEEEeCCCCCCChHHHHHHHH
Confidence 34455 55777789999999999999999999999999999999999965 776 9999999998763 588899
Q ss_pred HHHHhhCCCCCCcc----------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC
Q 015208 79 KRLMGACPSCSSAS----------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145 (411)
Q Consensus 79 ~~L~~~l~~~~~~~----------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~ 145 (411)
+.|++++.+..... .+++..+ .+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 99999987643210 0112222 2456777899999999999999999999999999999999999994
Q ss_pred CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 146 PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 146 ~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
+|+++|+|||++.. ..+++++++|++.|.++|+
T Consensus 823 -~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 823 -GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA 855 (856)
T ss_pred -CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence 99999999995443 3467889999999998774
No 14
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=8.1e-24 Score=229.93 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=136.4
Q ss_pred cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc--cHHHHHHHHHhh
Q 015208 7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT--RWGLLKKRLMGA 84 (411)
Q Consensus 7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~--~~~~l~~~L~~~ 84 (411)
++++...+.+ .+.++|+|+++||||||++||++|+.+||||++|+|+|.+++++|+|+|.++.|. .|+++++.|+++
T Consensus 587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence 3444444666 7999999999999999999999999999999999998844449999999998763 588899999999
Q ss_pred CCCCCCc--c--ee----------eeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208 85 CPSCSSA--S--VV----------LYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 147 (411)
Q Consensus 85 l~~~~~~--~--~~----------~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~ 147 (411)
+.+.... . .+ .+..+ .+.+..+.++|+|+|+++||||||++|+++|+++|+||++|+|.| .+
T Consensus 666 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T-~g 744 (774)
T PRK03381 666 LDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVAT-LG 744 (774)
T ss_pred HcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEee-cC
Confidence 8775321 0 00 11111 245677778999999999999999999999999999999999999 59
Q ss_pred CeEEEEEEEEcCCCcCCCHhHHHHHHHHH
Q 015208 148 GKVMDLFFVTDTRELLHTRKRKEDTYEHL 176 (411)
Q Consensus 148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L 176 (411)
++++|+|||++.+|.+++++ ++.|++.|
T Consensus 745 ~~a~D~F~V~d~~g~~~~~~-~~~l~~~L 772 (774)
T PRK03381 745 ADVVDVFYVTGAAGGPLADA-RAAVEQAV 772 (774)
T ss_pred CeEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence 99999999999998766554 66776665
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=228.67 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=144.4
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccccc
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 186 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~ 186 (411)
.+.+.|.|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|... .++++++.|.++|.+.. .
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~ 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence 68899999999999999999999999999999999999 9999999999999887643 35889999999998732 0
Q ss_pred cccccccceeeeccCcCCC-ChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHH
Q 015208 187 CDVEMVGTEITACSQASSF-LPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL 265 (411)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l 265 (411)
.. ...... ... .++ +...+..++.|.++|+.+.++|+|+|.++||||||++|+++|
T Consensus 672 ~~-----~~~~~~---~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L 728 (774)
T PRK03381 672 VL-----ARLAAR---EAAAAAV---------------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARAL 728 (774)
T ss_pred hh-----hhhhcc---ccccccc---------------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHH
Confidence 00 000000 000 001 112356789999999999999999999999999999999999
Q ss_pred HhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHH
Q 015208 266 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 266 ~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~ 313 (411)
+++|+||.+|+|. |.|+++.|+|||+ .+|.+++++ ++.|+++|.
T Consensus 729 ~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 729 ERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 9999999999999 7899999999996 789999975 788888774
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=2.3e-22 Score=223.08 Aligned_cols=176 Identities=23% Similarity=0.323 Sum_probs=146.9
Q ss_pred CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc------cHHHH
Q 015208 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT------RWGLL 77 (411)
Q Consensus 6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~------~~~~l 77 (411)
.++++...+++..+.++|+|+++||||||++||++|+.+||||++|+|+| +|+ ++|+|+|.+++|. +|+.|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~-alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-ALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCe-EEEEEEEECCCCCCCCCHHHHHHH
Confidence 44666556777789999999999999999999999999999999999977 565 9999999988762 47788
Q ss_pred HHHHHhhCCCCCCc------c------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 78 KKRLMGACPSCSSA------S------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 78 ~~~L~~~l~~~~~~------~------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
++.|++++.+.... . .+++..+ .+++..+.++|+|+|+++||||||++|+++|+++|+||.+|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 88898888654221 0 0112111 2667788899999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHHccc
Q 015208 143 STTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 143 ~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L~~~ 183 (411)
.| .++++.|+|+|++.+|.+ .++++++.|++.|.++|.+.
T Consensus 877 ~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 877 AT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred EE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 98 689999999999988765 46678999999999999764
No 17
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.90 E-value=3e-22 Score=220.81 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=144.3
Q ss_pred CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-EcCcEEEEEEEEEcCCCc------cHHHHH
Q 015208 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS-TDGKWCYIVFWVIGDSQT------RWGLLK 78 (411)
Q Consensus 6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~-tdg~~~~d~f~V~~~~g~------~~~~l~ 78 (411)
++.|++. +....++++|+|+++||||||++||++|+.+|+||.+|+|+ |.|.+++|+|+|++++|. +++.++
T Consensus 655 ~~~v~~~-~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALID-GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEe-ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 4455555 44447899999999999999999999999999999999998 544459999999998863 477788
Q ss_pred HHHHhhCCCCCCcc------------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 015208 79 KRLMGACPSCSSAS------------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 143 (411)
Q Consensus 79 ~~L~~~l~~~~~~~------------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~ 143 (411)
+.|.+++.+..... .+++..+ .++|..+.++|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 88988887643210 0112222 27789999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 144 TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 144 T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
| .++++.|+|||++..|.+.++++++.|++.|.++|
T Consensus 814 t-~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 T-FGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred e-cCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 9 78999999999999887776688899999998876
No 18
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.7e-22 Score=205.95 Aligned_cols=175 Identities=25% Similarity=0.318 Sum_probs=139.2
Q ss_pred CCcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHH
Q 015208 5 YDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLL 77 (411)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l 77 (411)
++.+|... ..+..++++|+|+++|+|.||+.+|+.+...|+||++|+|+| ||+ ++|+|.|+++.|. +...+
T Consensus 670 ~~~Lv~~~-~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~-alDtfiv~~~~g~~~~~dr~~~~ 747 (867)
T COG2844 670 GKPLVLIS-VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGY-ALDTFIVLEPDGFPVEEDRRAAL 747 (867)
T ss_pred cCcceeee-ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCc-eeeeEEEecCCCCccchhHHHHH
Confidence 34455544 445558999999999999999999999999999999999976 888 9999999999883 23344
Q ss_pred HHHHHhhCCCC-CCc--------ceeeeeccc---ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC
Q 015208 78 KKRLMGACPSC-SSA--------SVVLYYRAE---MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 145 (411)
Q Consensus 78 ~~~L~~~l~~~-~~~--------~~~~~~~~~---~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~ 145 (411)
+..|.+++.+. ..+ ..++|..++ +.+..+...|+++|.+.||||||++++++|++++++|++|+|.|
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT- 826 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT- 826 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence 45555554322 110 123454432 67888889999999999999999999999999999999999988
Q ss_pred CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 146 PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 146 ~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
.|+++.|+|||++..|..++++..+.+.+.|.+++..
T Consensus 827 ~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 827 FGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred ccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999998877777666776766666653
No 19
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.83 E-value=1.7e-19 Score=163.86 Aligned_cols=158 Identities=10% Similarity=0.068 Sum_probs=118.2
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC-C
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-P 319 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-~ 319 (411)
...+++|++.|+|||||++.++++|+++||||.+++++ .+|+.|.-++.+. |.+ ...+.|+..|...-++ .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~~----~~~~~le~~L~~l~~~~~ 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GSW----NAITLIESTLPLKGAELD 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CCh----hHHHHHHHHHHhhhhhcC
Confidence 45789999999999999999999999999999999998 6899998777774 333 4678898887544322 4
Q ss_pred ceEEEeccCC--CccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc-c--ccCcceeeEEEEEEEcCCCCCC
Q 015208 320 LRVTVVSRGP--DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR-H--MIGDREWEVYRVLLDEGDGLSV 394 (411)
Q Consensus 320 ~~~~i~~~~~--~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~-~--~~g~~~~~~~~f~v~~~~g~~~ 394 (411)
+.+.+..... ......++.++|.|.||||||++||++|+++|+||.++++.. + ..|...+ .-.|.+.-|.|..+
T Consensus 77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf-~~~~~v~lP~~~~~ 155 (190)
T PRK11589 77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQL-HIQITAHSPASQDA 155 (190)
T ss_pred eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccE-EEEEEEEcCCCCCH
Confidence 4444432111 122233689999999999999999999999999999999993 1 1333333 33477777888776
Q ss_pred C--hhhHHHHHHHHhc
Q 015208 395 P--RNKIEEGVWKLLM 408 (411)
Q Consensus 395 ~--~~~~~~~~~~~~~ 408 (411)
+ +. .++.++++|+
T Consensus 156 ~~L~~-~l~~l~~eL~ 170 (190)
T PRK11589 156 ANIEQ-AFKALCTELN 170 (190)
T ss_pred HHHHH-HHHHHHHHhC
Confidence 6 44 5777777764
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=9.6e-20 Score=140.08 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=70.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 319 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 319 (411)
||+|+|.|+||||||++|+++|+++|++|++|+|+ |.|+++.|+|||+ .+|.|+.+++++++|+++|.+++.++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999 8999999999996 89999999999999999999998763
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.77 E-value=4.1e-18 Score=131.05 Aligned_cols=75 Identities=63% Similarity=1.006 Sum_probs=70.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 319 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 319 (411)
|+|+|.++|||||||+|+++|+++|++|++|+|++.|.|+++.|+||++.+|++++++++++.|+++|.+++.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999966799999999999878999999999999999999988764
No 22
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.76 E-value=3.2e-18 Score=148.88 Aligned_cols=144 Identities=17% Similarity=0.082 Sum_probs=112.9
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 321 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 321 (411)
.+|++|++.|.||||++..++++..++||||.++|++ ..|+.+. |++...|.| +...+|+..| +.+.++..
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a--~i~lisgs~----dav~~le~~l-~~l~~~~~ 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFA--GIMLISGSW----DAVTLLEATL-PLLGAELD 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--Hhhccee--EEEEEeeCH----HHHHHHHHHh-hcccccCC
Confidence 4679999999999999999999999999999999999 7899888 455556666 6789999997 55666555
Q ss_pred EEEe--ccCCCc--cccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc-cccCcceeeEEEEEEEcCCCCCCCh
Q 015208 322 VTVV--SRGPDT--ELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR-HMIGDREWEVYRVLLDEGDGLSVPR 396 (411)
Q Consensus 322 ~~i~--~~~~~~--~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~-~~~g~~~~~~~~f~v~~~~g~~~~~ 396 (411)
+.+. ..++.+ ....++.++|.++||||||.++|++|.++|+||+++++.+ +..|..+ --|++.-..+.|++.
T Consensus 74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~---~lfha~it~~lPa~~ 150 (176)
T COG2716 74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSA---PLFHAQITARLPANL 150 (176)
T ss_pred eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCc---cceehhhhccCCCcC
Confidence 5433 333332 2467889999999999999999999999999999999995 3444333 226666666667764
Q ss_pred h
Q 015208 397 N 397 (411)
Q Consensus 397 ~ 397 (411)
+
T Consensus 151 ~ 151 (176)
T COG2716 151 S 151 (176)
T ss_pred c
Confidence 4
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=8.1e-18 Score=128.48 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=64.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~ 313 (411)
+|+|+|.++||||||++|+++|+++|++|+.|+|+ |.|+++.|+|||+ .+|+|+.|++.+++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999 8999999999996 78999999999999999874
No 24
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.4e-16 Score=122.58 Aligned_cols=73 Identities=16% Similarity=0.358 Sum_probs=67.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHHcc
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L~~ 182 (411)
+|+|+|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||++.+|.+ .+++++++|++.|.+++..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999 899999999999998865 5678899999999998853
No 25
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=3.4e-16 Score=119.56 Aligned_cols=68 Identities=29% Similarity=0.352 Sum_probs=62.0
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHH
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLK 177 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~ 177 (411)
+|+|+|.++||||||++|+++|+++|++|++|+|.| .|+++.|+|||++.+|.++ ++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999 8999999999999987654 6788888887764
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=9.4e-16 Score=119.29 Aligned_cols=72 Identities=72% Similarity=1.152 Sum_probs=66.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
.++|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+...++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 689999999999999999999999999999999889999999999999877755678999999999999865
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=1.9e-15 Score=116.71 Aligned_cols=71 Identities=31% Similarity=0.339 Sum_probs=64.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L 180 (411)
+.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++++... ++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999999999977899999999999887654 5788999999988764
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.64 E-value=5.4e-15 Score=134.42 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 16 KEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 16 ~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
++..++.|+++|+|||||.++++++|+++||||++++++.-|..|.-++.|+.+. .....++..|...... ... ...
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-~~~~~le~~L~~l~~~-~~L-~i~ 80 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-NAITLIESTLPLKGAE-LDL-LIV 80 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-hHHHHHHHHHHhhhhh-cCe-EEE
Confidence 3557899999999999999999999999999999999988555588889886432 1333444444332211 111 111
Q ss_pred eeccccc-CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC---CC--eEEEEEEEEcCCCcCCCHhHH
Q 015208 96 YYRAEMQ-APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP---DG--KVMDLFFVTDTRELLHTRKRK 169 (411)
Q Consensus 96 ~~~~~~~-~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~---~~--~~~d~F~V~~~~~~~~~~~~~ 169 (411)
..+.... .......+.++|++.||||++++++++|+++|+||.+.+-.|.. .+ .+.-.|.|.-+.+. ..
T Consensus 81 v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-----~~ 155 (190)
T PRK11589 81 MKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-----DA 155 (190)
T ss_pred EEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-----CH
Confidence 2111110 11122258999999999999999999999999999888877632 12 44555666555432 25
Q ss_pred HHHHHHHHHHHc
Q 015208 170 EDTYEHLKTILG 181 (411)
Q Consensus 170 ~~l~~~L~~~L~ 181 (411)
+.|+++|.+.-+
T Consensus 156 ~~L~~~l~~l~~ 167 (190)
T PRK11589 156 ANIEQAFKALCT 167 (190)
T ss_pred HHHHHHHHHHHH
Confidence 667777776443
No 29
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=3.6e-15 Score=114.75 Aligned_cols=71 Identities=25% Similarity=0.414 Sum_probs=64.3
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE--eCCCCeEEEEEEEEcCCC-cCCCHhHHHHHHHHHHHHHcc
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVMDLFFVTDTRE-LLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~--T~~~~~~~d~F~V~~~~~-~~~~~~~~~~l~~~L~~~L~~ 182 (411)
|+|+|.++|||||||+|+++|+++|++|++|+|. | .|+++.|+||| +.+| ++.++++++.|++.|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 8 89999999999 6655 446788999999999998853
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=6.8e-15 Score=113.89 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=64.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCC-CcC-CCHhHHHHHHHHHHHHHc
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELL-HTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~-~~~-~~~~~~~~l~~~L~~~L~ 181 (411)
|+|+|+++||||||++|+++|+++||||++|+|+| .+++++|+|+|++++ +.+ .+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t-~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT-HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE-ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999998 599999999999987 654 467889999999999875
No 31
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=3e-13 Score=104.65 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=65.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cC-CCcCCCHHHHHHHHHHHHHHHc
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~-g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
|+|+|.++|||||+++|+++|+++||||.+|++. |.|+.+.|+|+|. .+ |.++.+++++++|++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 6799999999996 55 8888888899999999987764
No 32
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=3e-13 Score=102.01 Aligned_cols=64 Identities=25% Similarity=0.240 Sum_probs=58.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
.+|+|+++||||||+++|++|+.+|+||++|+|+| ||. ++|+|+|.+.+|+..+.+++.+++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~-~LDtF~V~d~~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGL-ALDIFVVTGWKRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCe-EEEEEEEecCCccchHHHHHHHHHhh
Confidence 58999999999999999999999999999999976 666 89999999999988888888888765
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.45 E-value=7e-13 Score=100.05 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=57.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
+.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.- -+.+++.|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999999987641 245566666554
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.43 E-value=5.1e-13 Score=116.54 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=114.3
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcc--ee
Q 015208 17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSAS--VV 94 (411)
Q Consensus 17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~--~~ 94 (411)
+..++.|+++++||||+...+|+..+++||||+++++...|+.|..++.++ ..|+.+ ..|++.|+...... ..
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis----gs~dav-~~le~~l~~l~~~~~L~v 76 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS----GSWDAV-TLLEATLPLLGAELDLLV 76 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe----eCHHHH-HHHHHHhhcccccCCeEE
Confidence 345789999999999999999999999999999999999777788888888 689888 77888886544321 11
Q ss_pred eeeccccc-CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHH
Q 015208 95 LYYRAEMQ-APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDT 172 (411)
Q Consensus 95 ~~~~~~~~-~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l 172 (411)
.+.+.... .......+.+.|.+.||||++.++|+.|..+|+||.+....|.. .+.-.-.|...-.-.-+ ..-.+..|
T Consensus 77 ~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lP-a~~~i~~l 155 (176)
T COG2716 77 VMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLP-ANLSISAL 155 (176)
T ss_pred EEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCC-CcCcHHHH
Confidence 23332222 25566789999999999999999999999999999877765532 22223445554332221 12235667
Q ss_pred HHHHHH
Q 015208 173 YEHLKT 178 (411)
Q Consensus 173 ~~~L~~ 178 (411)
+++++.
T Consensus 156 ~~~f~a 161 (176)
T COG2716 156 RDAFEA 161 (176)
T ss_pred HHHHHH
Confidence 777766
No 35
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.40 E-value=3e-12 Score=99.58 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=63.8
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 319 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 319 (411)
+++|.++|||||+++++++|+++|++|.+|+|.+ |.++++.|+|||. .+|. ..++++++++++.|.+++++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence 6899999999999999999999999999999995 4899999999996 5445 566788899999999988763
No 36
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.38 E-value=4.3e-13 Score=100.66 Aligned_cols=72 Identities=74% Similarity=1.130 Sum_probs=67.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC----hhhHHHHHHHHhccC
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 410 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~----~~~~~~~~~~~~~~~ 410 (411)
++|++|..||.+++|+|-+|+.+|+.||++++.|+..+++.||+|+|.+.+..+. ++ +++|+|+|++.+|||
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999999986544 65 778999999999998
No 37
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=6.8e-12 Score=96.75 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=61.9
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME 315 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~ 315 (411)
+.|+|.++||||||++++++|+.+|+||.+|+|.+ +.++.+.|+||+. .+|.++.+++++++|++.|..+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999984 2468999999996 6788887788889999988664
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=9.6e-12 Score=95.69 Aligned_cols=67 Identities=34% Similarity=0.421 Sum_probs=58.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~ 177 (411)
+.|+|.++||||+|++|+++|+++|+||.+|+++| .+++++|+|+|.++++.+.++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t-~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST-QGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec-CCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 68999999999999999999999999999999998 57799999999998876556677777766553
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3.3e-11 Score=91.66 Aligned_cols=70 Identities=40% Similarity=0.521 Sum_probs=63.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
|.|.|.++|+||+|++|+++|+++|+||.++++.| .+++++|+|++.++++.+.+.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT-LGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe-cCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 57899999999999999999999999999999998 55699999999998877667789999999987753
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.21 E-value=2.9e-10 Score=121.81 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=114.8
Q ss_pred eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208 109 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 187 (411)
Q Consensus 109 ~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~ 187 (411)
...++|.. +|++|+|.+++++|+.++++|++|++.+ +|.+...|.|....|.++++ ..+++.+...+.+..
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~--- 617 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSEL--- 617 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCC---
Confidence 35788888 9999999999999999999999999987 78889999999988887776 566777777776532
Q ss_pred ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHh
Q 015208 188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD 267 (411)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~ 267 (411)
+ ... ..||.+.+.. ++++|++.||||+|+.++++|.
T Consensus 618 ------~-----------~~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~- 653 (693)
T PRK00227 618 ------P-----------DPA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP- 653 (693)
T ss_pred ------C-----------ccc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh-
Confidence 0 010 1245566653 7999999999999999999999
Q ss_pred CCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 268 YNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 268 ~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
+|.+|+++ |.|..+.|.||+... ....+++.++..++.
T Consensus 654 ---~~~~~~~~--~~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 654 ---DLLWITAS--TPGATMIVQAALKPG-------FDRATVERDVTRVLA 691 (693)
T ss_pred ---hhhhHhhc--CCCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence 67888998 899999999999721 124667777666553
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.14 E-value=5.1e-10 Score=119.94 Aligned_cols=142 Identities=15% Similarity=0.064 Sum_probs=112.6
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc--cHHHHHHHHHhhCCCCCCcceeeee
Q 015208 21 CVITVNC-PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT--RWGLLKKRLMGACPSCSSASVVLYY 97 (411)
Q Consensus 21 ~~V~v~~-~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~--~~~~l~~~L~~~l~~~~~~~~~~~~ 97 (411)
-.|+|.. +|++|++.+++++|+.+|++|.+|++.++|. ++..|.|.+..|. +...+.+.+...+.+...... .
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGP-WSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCc-eEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 5778887 9999999999999999999999999988888 6699999998774 567788888888776554311 0
Q ss_pred cccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208 98 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177 (411)
Q Consensus 98 ~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~ 177 (411)
.++ ...-..++++|.+.||+|+|+.++++|. +|..|++.| .|..++|.|++.... ...+++..+.
T Consensus 623 ~~~---~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~~-------~r~~~~~~~~ 687 (693)
T PRK00227 623 GIT---ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPGF-------DRATVERDVT 687 (693)
T ss_pred CCC---ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCcc-------cHHHHHHHHH
Confidence 111 0011127999999999999999999999 899999998 899999999997321 2466777777
Q ss_pred HHHc
Q 015208 178 TILG 181 (411)
Q Consensus 178 ~~L~ 181 (411)
.+|.
T Consensus 688 ~~~~ 691 (693)
T PRK00227 688 RVLA 691 (693)
T ss_pred HHHh
Confidence 7764
No 42
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.10 E-value=6.3e-10 Score=85.53 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc-----cHHHHHHHHH
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT-----RWGLLKKRLM 82 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~-----~~~~l~~~L~ 82 (411)
+++|+|+++|+||+|++++++|+++|+||.+|.+++.+...+|+|+|.++++. .|+++++.|.
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 36899999999999999999999999999999998844358899999998763 3444444443
No 43
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.08 E-value=4.6e-10 Score=81.21 Aligned_cols=66 Identities=76% Similarity=1.488 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCC---ccHHHHHHHHHhhCC
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQ---TRWGLLKKRLMGACP 86 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g---~~~~~l~~~L~~~l~ 86 (411)
++|+|.+||+.||-.++|+++.+.|++|..++++|||+|+..+|+|..... .+|+.++++|.++++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP 69 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP 69 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999999999999999998763 589999999998764
No 44
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.03 E-value=2.7e-09 Score=81.04 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=59.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME 315 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~ 315 (411)
|+++|.++||||+|++|+++|.++|++|.++++. +.++.+.|.|++. .+|.+. +.+.+++|+++|..+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998 5677999999996 677774 457888899888654
No 45
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.97 E-value=7.3e-09 Score=78.26 Aligned_cols=69 Identities=35% Similarity=0.493 Sum_probs=60.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 179 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~ 179 (411)
+.|.|.++|+||+|++++++|+.+|++|.++.+.+. +++..+.|++.++++...++++++++++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTT-GERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999984 459999999998876556667889998888764
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.80 E-value=4.2e-08 Score=76.17 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=52.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 315 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~ 315 (411)
+.+|++.|+||||+++.++++|+++||||.+++.+ +.|+++.-++.++.. ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999 789999977777632 35778999998654
No 47
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.71 E-value=1.6e-07 Score=70.78 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=56.8
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME 315 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~ 315 (411)
+.+.|.++|+||+|++++++|+++|++|.++.+. +.++...+.|++. .+|... ++++.++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999988 5566888999996 565653 457888898887553
No 48
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.66 E-value=2.3e-07 Score=71.94 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=54.7
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
+.+|++.++||||+++.++++|+++|+||.+.+..+ .++++.-.+.|.-+ ++..++++++|.+....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998 78998888888554 45678888888885543
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.60 E-value=3e-07 Score=71.52 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhh
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGA 84 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~ 84 (411)
+.|++.|+||||+.++++++|+++|+||++++.+..+.+|.-.+.+..+. ...+.+++.|+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-ccHHHHHHHHHHH
Confidence 67899999999999999999999999999999988555577777777553 3456677666664
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=2.7e-07 Score=71.31 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=49.0
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 316 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 316 (411)
++++.|+||||++++++++|+++||||.+.+.. +.++.+.-.|.+. +.+ ...+.|++.|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~------~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDS------ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCC------CCHHHHHHHHHHHH
Confidence 479999999999999999999999999999866 5777777666665 221 13577777775544
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.53 E-value=7.5e-07 Score=69.28 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=48.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 315 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~ 315 (411)
++++++.|+|||||++.+++.|+++|+||.+++.. ..++.+.-...+.. .+ ...+.|++.|.+.
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~~F~m~~~~~~--~~----~~~~~l~~~l~~~ 64 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGTEFALTMLVEG--SW----DAIAKLEAALPGL 64 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcCEEEEEEEEEe--cc----ccHHHHHHHHHHH
Confidence 47899999999999999999999999999999988 46666643333332 22 2357788877553
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.51 E-value=6.5e-07 Score=69.20 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=54.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
.|+|.|+||||+.++++++|+++|+||.+.+..+ .|. |.-.|.|.-|.+.+.+.+++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~-f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR-LSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe-eEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999999999998876 555 87899999887766777888777755
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.34 E-value=4.6e-06 Score=61.96 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=46.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
|.|.|.++||||+|++++++|+++|+||.++.+.+..+ ......+.+.+ ....+++.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999998554 23444443322 2334556566555
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=6e-06 Score=63.49 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=50.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhC
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGAC 85 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l 85 (411)
.|++.|+||||++++++++|+++|+||.+.+.++ .+..+.-.+.+..+.+ ...+.+++.|+...
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999985 3343656667776654 35777877777654
No 55
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.29 E-value=4.2e-06 Score=62.16 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=44.9
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
|.|.+.++||||+|++++++|+++|+||.++...+ .++.....|.... .+....+++.++|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSS--DKDGVGIVFIVIV-----VDEEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE--ESSTTEEEEEEEE-----EEGHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe--cCCCceEEEEEEE-----CCCCCHHHHHHHHHc
Confidence 57899999999999999999999999999999884 4432222233221 113456667776654
No 56
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.27 E-value=5.7e-05 Score=62.26 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeeccc
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAE 100 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 100 (411)
-+|.|+..|+||=++.++..|.++|+||..-.|--.|..-+.-+.|..|+ .-.+.|+++ .|...
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-----~A~~~Lee~----------gF~Vr- 67 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-----EAHSVLEEA----------GFTVR- 67 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-----HHHHHHHHC----------CcEEE-
Confidence 37899999999999999999999999999766644444123445555322 223345542 11111
Q ss_pred ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
..-++-|..+|+||=|++|+.+|.++++|+..+..|++...+++-+|.+
T Consensus 68 -------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 68 -------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred -------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence 1246677789999999999999999999999999998888888877766
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.27 E-value=6.1e-06 Score=64.37 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=52.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcC------cEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDG------KWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg------~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
.|++.|+|+||+.++++++|+++|+||.+.+..+++ ..+.-.+.+..|.+.+...+++.|+...
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999999999999997743 4466778888776556677877777754
No 58
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=3.8e-06 Score=66.97 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC 85 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l 85 (411)
..|++.|+|+||++++++++|+++|+||.+.+..+.+..|.-.+.+.-|. +.+.+.+++.|+...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999987444476777777665 445677777777654
No 59
>PRK00194 hypothetical protein; Validated
Probab=98.16 E-value=7.9e-06 Score=65.28 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC 85 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l 85 (411)
.+.|++.|+|+||++++++++|+++|+||.+.+..+.+..+.-.+.+.-+. +.+.+.+++.|++..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999998877554476666666554 334567777676643
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=7.1e-06 Score=65.39 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 389 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~ 389 (411)
+.+.+.|+|||||+++||++|+++|+||.+++.. +.++.. .-++.+..|
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f--~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYF--TMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCcc--EEEEEEEeC
Confidence 4689999999999999999999999999999998 666665 555666655
No 61
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=1.8e-05 Score=60.80 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=30.7
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+.|.|||||+++||++|+++|+||.+++..
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~ 33 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQF 33 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence 68899999999999999999999999999987
No 62
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.6e-05 Score=57.90 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=57.3
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 179 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~ 179 (411)
++|+|.+||+.||=.++++++.+.|++|..+.+.| .|.+..-+|+|...... -+-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence 47899999999999999999999999999999998 78889999999865432 245788888888763
No 63
>PRK00194 hypothetical protein; Validated
Probab=98.05 E-value=1.2e-05 Score=64.21 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=40.5
Q ss_pred cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208 336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 389 (411)
Q Consensus 336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~ 389 (411)
.+.+.+.|.||||+|++||.+|+++|+||.+++.. ..++.. .-++.+..+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~--~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYF--TMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCee--EEEEEEEec
Confidence 35789999999999999999999999999999988 655554 444444444
No 64
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.02 E-value=6.6e-05 Score=73.07 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=48.2
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe--cCCCcCCCHHHHHHHHHHHHH
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~--~~g~~~~~~~~~~~l~~~L~~ 314 (411)
..+++|++.|+|||||++.|+++|+++|+||.+.+..+...++. |.+. .+..+ .+...+.|+++|.+
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~----F~m~i~v~~~~--~~~~~~~L~~~L~~ 72 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR----FFMRVEFEGDG--LIFNLETLRADFAA 72 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe----EEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence 35789999999999999999999999999999999873115553 5442 22211 12336788888744
No 65
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.00 E-value=2.9e-05 Score=60.48 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=30.8
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+.|.||||++.+||++|+++|+||.+++..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~ 33 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE 33 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee
Confidence 67899999999999999999999999999997
No 66
>PRK07431 aspartate kinase; Provisional
Probab=97.95 E-value=0.015 Score=62.41 Aligned_cols=270 Identities=18% Similarity=0.138 Sum_probs=148.9
Q ss_pred EEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208 22 VITVN-CPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYR 98 (411)
Q Consensus 22 ~V~v~-~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~ 98 (411)
.+++. .++.+|+++++...|.++|.||.--..+. .+. .--.|.|...+ .+...+.|++.... ... .
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~-~~isf~i~~~d---~~~~~~~l~~l~~~-~~~-----~- 340 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNS-NDIAFTVAENE---LKKAEAVAEAIAPA-LGG-----A- 340 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCC-ccEEEEEeHHH---HHHHHHHHHHHHHH-cCC-----C-
Confidence 34443 57889999999999999999998664432 222 22356665322 12222223321110 100 0
Q ss_pred ccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHH
Q 015208 99 AEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH 175 (411)
Q Consensus 99 ~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~ 175 (411)
.-....+...|.+++. +.+|+++++..+|++.|++|.... + . +.- -.|.|. ++..++..+.
T Consensus 341 ---~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~-Is~vv~--------~~d~~~av~~ 404 (587)
T PRK07431 341 ---EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVK-VSCVID--------AEDGDKALRA 404 (587)
T ss_pred ---cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCE-EEEEEc--------HHHHHHHHHH
Confidence 0012346788888885 789999999999999999996444 3 2 221 234442 2334555566
Q ss_pred HHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEE-eCCc
Q 015208 176 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDH 254 (411)
Q Consensus 176 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~-~~DR 254 (411)
|.+.+...... .+. .|-+..+ + ...=+-|. ..++...|++. ..++
T Consensus 405 Lh~~f~~~~~~-------~~~---------~~~~~~~------~--------~~~v~gIa----~~~~~~~i~l~~~~~~ 450 (587)
T PRK07431 405 VCEAFELEDSQ-------IEI---------NPTASGQ------D--------EPEVRGVA----LDRNQAQLAIRNVPDR 450 (587)
T ss_pred HHHHhccCCcc-------ccc---------CccccCC------C--------CCcEEEEE----ccCCEEEEEECCCCCC
Confidence 66666432100 000 0000000 0 00012222 23455666665 4788
Q ss_pred hhHHHHHHHHHHhCCeEEEEEEEEeeecCc--eEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc---eEEEeccCC
Q 015208 255 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL---RVTVVSRGP 329 (411)
Q Consensus 255 pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~--~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~---~~~i~~~~~ 329 (411)
+|+++.+...|+++|+++..-.-+. ..++ ...=.|.+.. +.+.++...|.. +.+.+ .+.+. .+.
T Consensus 451 ~g~~a~if~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~--------~~~~~~~~~l~~-l~~~~~~~~i~~~-~~v 519 (587)
T PRK07431 451 PGMAASIFGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPK--------EDREAAQKVLRE-LAKQLPGAEVEDG-PAI 519 (587)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHhcCCceEEEe-CCe
Confidence 9999999999999999998443210 0121 1221244431 222333332222 22111 11111 111
Q ss_pred CccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 330 DTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 330 ~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
..+.++|. .+||++..+..+|++.|++|....++
T Consensus 520 -------a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S 556 (587)
T PRK07431 520 -------AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATS 556 (587)
T ss_pred -------EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeecc
Confidence 26889997 89999999999999999999777654
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.90 E-value=0.00027 Score=68.79 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEc-CCCccHHHHHHHHHhhCC
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIG-DSQTRWGLLKKRLMGACP 86 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~-~~g~~~~~l~~~L~~~l~ 86 (411)
....|+|.|+|||||.++++++|+++|+||.+.+.++ .+..|.-.+.+.- +.+...+.+++.|++...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE 75 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987 5445767777776 444557788888877553
No 68
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.89 E-value=0.00027 Score=68.51 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=72.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSASVVLYYR 98 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~~~~~~~ 98 (411)
.|+|.|+|+|||.+.++++|+++|+||++.+.+.+ +.+|.-.+.+..+.. ...+.+++.|++++....+..- +.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i-~l-- 78 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTW-EL-- 78 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEE-EE--
Confidence 58999999999999999999999999999999873 344767777776653 3567777777772322222100 10
Q ss_pred ccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 99 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 99 ~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
..... ...|-|.+.-+---|..+......-.+++.=+-+.+
T Consensus 79 ---~~~~~--~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 79 ---ILADK--LKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred ---ecCCC--CcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 11111 123444444444457777777666655544445544
No 69
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.82 E-value=0.00048 Score=67.01 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=75.9
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeee
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLY 96 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~ 96 (411)
....|+|.|+||||+.++++++|+++|+||.+.+.++ .+..|.-.+.+..|.+...+.+++.|++...... ... ..
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~-l~i-~i 83 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG-MQW-EL 83 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC-cEE-EE
Confidence 3678999999999999999999999999999999974 3333666777776776667788888887654321 100 11
Q ss_pred ecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 97 YRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 97 ~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
...... ..|-|.+.-+---|..+........++..=+-+.|
T Consensus 84 -----~~~~~~--~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 84 -----HDPAAR--PKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred -----eecccC--ceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 111111 13334333344456677766666655544455555
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.78 E-value=0.00033 Score=68.21 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=68.6
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--E-cCcEEEEEEEEE-cCCCccHHHHHHHHHhhCCCCCCccee
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS--T-DGKWCYIVFWVI-GDSQTRWGLLKKRLMGACPSCSSASVV 94 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~--t-dg~~~~d~f~V~-~~~g~~~~~l~~~L~~~l~~~~~~~~~ 94 (411)
....|+|.|+|||||.+.++++|+++|+||++.+.+ + .|..|+-+.++. .+.+.+.+.+++.|.+.... .+..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~-l~l~-- 84 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK-FDMQ-- 84 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH-hCCe--
Confidence 456899999999999999999999999999999996 3 444343333332 23334566777777664322 1110
Q ss_pred eeecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 95 LYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 95 ~~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
+ .+.... ....|-|...-+..-|..+........++..=+-+.+
T Consensus 85 -~---~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 85 -W---AIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred -E---EEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 0 001111 1123333333334446666666666555544444444
No 71
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.77 E-value=3.3e-05 Score=60.90 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC 85 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l 85 (411)
...|||.|.||||+.+.++++|+++|.||++-..+- +|. |.-.+.|.-+. ..+...+++.+....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~-ftm~~lV~~~~~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGF-FTMIMLVDISKEVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhh-ceeeeEEcCChHhccHHHHHHHHHHHH
Confidence 467999999999999999999999999999877655 887 66666666653 345566666666543
No 72
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.75 E-value=0.00036 Score=67.96 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=32.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
.+++|++.|+|||||++.|+..|+++|+||.+.+-.
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 457999999999999999999999999999987763
No 73
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.73 E-value=0.00021 Score=55.57 Aligned_cols=64 Identities=25% Similarity=0.303 Sum_probs=47.0
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHL 176 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L 176 (411)
-.+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.|.-. +.+.++.+-+.|
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L 69 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHH
Confidence 357899999999999999999999999999999999854 6777777777443 334455554443
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.70 E-value=0.00054 Score=66.64 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=32.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
.++++|.|+|||||++.+++.|+++|+||.+.+..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 57899999999999999999999999999977764
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.70 E-value=0.0007 Score=65.67 Aligned_cols=106 Identities=11% Similarity=0.125 Sum_probs=63.8
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce--EE
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR--VT 323 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~--~~ 323 (411)
+|++.|+|||||++.+++.|+++|+||.+.+-..+..++.|.-.+.++..+..+ ..+.|+++|.+++...+. +.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~ 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence 789999999999999999999999999988876322345554333444222112 356777776553444333 33
Q ss_pred EeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCC
Q 015208 324 VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLD 361 (411)
Q Consensus 324 i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~g 361 (411)
+..... ..++-|....+..-+.++-...++-.
T Consensus 78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~ 109 (280)
T TIGR00655 78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGE 109 (280)
T ss_pred EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCC
Confidence 332211 12444444444556666666655443
No 76
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.66 E-value=0.00036 Score=54.31 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=46.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 312 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L 312 (411)
..+-|.|.+.||||+|.+|++++++.|+||.+..+.....++.+.-.|.+. +.+.++++.|.+.|
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L 69 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 346789999999999999999999999999999987321245555445554 45566777776665
No 77
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00051 Score=52.32 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=47.1
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
|.|.+.||||+|++|+.++++.|.||.+....+..++.+...|.+.-. +.+.++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 678999999999999999999999999888876445777666666443 24455666555544
No 78
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.60 E-value=8.9e-05 Score=58.52 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=45.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
...+|+|.|+||||+.+.++++|+++|+||.+-.=+ -.-+.+.-.+.++..-.. .....++..|.+..+
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQt--vm~~~ftm~~lV~~~~~~----~d~~~lr~~l~~~~~ 70 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT--VMDGFFTMIMLVDISKEV----VDFAALRDELAAEGK 70 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH--HHhhhceeeeEEcCChHh----ccHHHHHHHHHHHHH
Confidence 357999999999999999999999999999943322 223445544455421111 234567666655443
No 79
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.56 E-value=0.0042 Score=51.40 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=79.1
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccccccccc
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVE 190 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~ 190 (411)
.|.|...++||=|+.++.+|.++|+||..-.|.- .++.-+-...|.+ |+. - ..+|....
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~-------~d~---A----~~~Lee~g------ 63 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDR-------PDE---A----HSVLEEAG------ 63 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCC-------hHH---H----HHHHHHCC------
Confidence 5788999999999999999999999998777754 2332222233311 111 0 22232210
Q ss_pred cccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHhCCe
Q 015208 191 MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI 270 (411)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~ 270 (411)
+ .|.+. -|+-|.-+|+||=|..|+.+|.++++
T Consensus 64 -----F------------------------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~di 95 (142)
T COG4747 64 -----F------------------------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDADI 95 (142)
T ss_pred -----c------------------------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhcCc
Confidence 0 12222 27888899999999999999999999
Q ss_pred EEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 271 QVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 271 ~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
|+.....-. +.-+++- .++.. +..++.+.+|+.
T Consensus 96 NldYiYAFv-~ek~KAl--li~r~--------ed~d~~~~aLed 128 (142)
T COG4747 96 NLDYIYAFV-TEKQKAL--LIVRV--------EDIDRAIKALED 128 (142)
T ss_pred Cceeeeeee-ecCceEE--EEEEh--------hHHHHHHHHHHH
Confidence 998777653 2344444 23321 344566666643
No 80
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.53 E-value=0.00022 Score=64.11 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCC
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG 391 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g 391 (411)
+.+++.+.||||+|.+||.+|+++|+||.++++.. ++.+ . ..++.+..+.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~-t~~~-~--~sr~TIvv~~~ 53 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP-AEQK-G--ISRITMVVPGD 53 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE-cCCC-C--ccEEEEEEECC
Confidence 47899999999999999999999999999999972 2221 2 23566775543
No 81
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.0013 Score=50.08 Aligned_cols=61 Identities=3% Similarity=0.094 Sum_probs=45.6
Q ss_pred EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
+.+.+.||||+|.+|++++++.|+||.+...... ..+.+.-.|.+. +.+.++++.+...|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence 6789999999999999999999999997776632 234444444444 445677788877763
No 82
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00072 Score=63.77 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCC-ccHHHHHHHHHh
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQ-TRWGLLKKRLMG 83 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g-~~~~~l~~~L~~ 83 (411)
+...+++.|||++||.++|++.|+.+||||.++..++| +++|+.-.......+ ...+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence 56899999999999999999999999999999999972 333433333333332 456677777766
No 83
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.35 E-value=0.00056 Score=52.85 Aligned_cols=63 Identities=16% Similarity=0.021 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhc
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 408 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~ 408 (411)
+.+.+...++||+|..|+.+|+.+|+||.++.+. ...... ..++-+... |. .+ .++++.+||.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg--~te~~~--~sriti~~~-~~---~~-~i~qi~kQL~ 65 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN--ERDTSG--VSEMKLTAV-CT---EN-EATLLVSQLK 65 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec--ccCCCC--eeEEEEEEE-CC---HH-HHHHHHHHHh
Confidence 4788999999999999999999999999999998 333333 556666632 22 22 3556666654
No 84
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.25 E-value=0.0014 Score=52.82 Aligned_cols=64 Identities=14% Similarity=0.021 Sum_probs=48.9
Q ss_pred cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
.+.+++...|+||+|..|+..|+.+|+||.++.+. ..+... ..++.+... + .+ .++++.+||.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg--~te~~~--iSRmtivv~-~----~~-~i~Qi~kQL~K 71 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL--PIQDGD--KSRIWLLVN-D----DQ-RLEQMISQIEK 71 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe--ecCCCC--ceEEEEEEc-C----ch-HHHHHHHHHhC
Confidence 35789999999999999999999999999999998 443444 566777653 2 23 56777777654
No 85
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.24 E-value=0.00084 Score=52.66 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=47.4
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
.+.+.-.++||+|..||.+|+.+|+||.++.+. ...... +.+|-+....|. .+ .++++.++|..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg--~Te~~~--iSRmtivv~~~d---~~-~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT--HSEQPG--ISNMEIQVDIQD---DT-SLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEec--ccCCCC--ceEEEEEEeCCC---HH-HHHHHHHHHhC
Confidence 678889999999999999999999999999998 333344 566766653232 23 46666666643
No 86
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.15 E-value=0.0017 Score=46.79 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=40.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
+.+..+|+||.|++++..|.++|+||.+..++...++..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999998755577887787744
No 87
>PRK07431 aspartate kinase; Provisional
Probab=97.15 E-value=0.38 Score=51.70 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=111.0
Q ss_pred CCcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCccee
Q 015208 18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV 94 (411)
Q Consensus 18 ~~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~ 94 (411)
.+...|.+++. +.+|+++++.++|.+.|.||.... +.+. --.|.|... +.+...+.|.+.+.........
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~--~Is~vv~~~---d~~~av~~Lh~~f~~~~~~~~~ 418 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEV--KVSCVIDAE---DGDKALRAVCEAFELEDSQIEI 418 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC--EEEEEEcHH---HHHHHHHHHHHHhccCCccccc
Confidence 46778899986 789999999999999999997443 2222 134555532 2333445566655322211000
Q ss_pred eeecccc------cCCCCCceEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeCCC--CeEEEEEEEEcCCCcCCC
Q 015208 95 LYYRAEM------QAPKPSDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPD--GKVMDLFFVTDTRELLHT 165 (411)
Q Consensus 95 ~~~~~~~------~~~~~~~~t~i~v~-~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~--~~~~d~F~V~~~~~~~~~ 165 (411)
.+..... .-....+...|++. .++.+|+++++...|+++|++|..-......+ |..--.|.+..
T Consensus 419 ~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~------- 491 (587)
T PRK07431 419 NPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK------- 491 (587)
T ss_pred CccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-------
Confidence 1110000 01223455666665 47889999999999999999997543321111 22222344422
Q ss_pred HhHHHHHHHHHHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCce
Q 015208 166 RKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHT 245 (411)
Q Consensus 166 ~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t 245 (411)
+++.+..+.+.+ +.... + ...+.++ ++..
T Consensus 492 -~~~~~~~~~l~~-l~~~~----------------------~-----------------------~~~i~~~----~~va 520 (587)
T PRK07431 492 -EDREAAQKVLRE-LAKQL----------------------P-----------------------GAEVEDG----PAIA 520 (587)
T ss_pred -HHHHHHHHHHHH-HHHhc----------------------C-----------------------CceEEEe----CCeE
Confidence 222233222222 22100 0 0122222 3567
Q ss_pred EEEEEeC---CchhHHHHHHHHHHhCCeEEE
Q 015208 246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~ 273 (411)
.|.+.|. .+||++.++..+|.+.|+++.
T Consensus 521 ~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~ 551 (587)
T PRK07431 521 KVSIVGAGMPGTPGVAARMFRALADAGINIE 551 (587)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCcEE
Confidence 8888885 889999999999999999997
No 88
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0031 Score=59.56 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=48.6
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
..+++++.|+|++|+.++|++.|+++||||.++.-++.. .|++.---......+. ...+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~----~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP----LDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCc----ccHHHHHHHHHH
Confidence 678999999999999999999999999999999998643 4554333333222221 234566666666
No 89
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0061 Score=45.41 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=41.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC----CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~----~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~ 177 (411)
+.|..+|+||+|++|+.+|+++|+||.+....... .+.+.-.|.+... +.+.++.+.+.|+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence 35778999999999999999999999887765422 3555444544332 2344555544443
No 90
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.05 E-value=0.0047 Score=47.78 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=45.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
..+.+...|+||.|++++++|+..|+||.+..+.-+.+....-...+.. | ++..+++|.+.|.+..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCCc
Confidence 4689999999999999999999999999998886434333322222212 2 2455667777666643
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.97 E-value=0.0046 Score=47.85 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=32.5
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+++...++||+|..++.+|+.+|+||.++.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~ 37 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT 37 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence 4789999999999999999999999999999998
No 92
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.95 E-value=0.0065 Score=48.92 Aligned_cols=68 Identities=15% Similarity=0.360 Sum_probs=48.1
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
.....|.+...|+||+|++|++.|+..|+||.+-.+.-+.+..+--...+.. + ++.+++|.+.|.+..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----chHHHHHHHHHhCCc
Confidence 4556799999999999999999999999999998876544433222222222 1 345677777777644
No 93
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0075 Score=45.92 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=44.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHh-HHHHHHHHHHH
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK-RKEDTYEHLKT 178 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~-~~~~l~~~L~~ 178 (411)
.+.+.++|+||++++|+..|+++|+||......+..++.+.-.|.+...+ .+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence 57899999999999999999999999988876543346555556664332 22 45555555444
No 94
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0054 Score=49.14 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=51.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCC-CCChhhHHHHHHHHhccC
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL-SVPRNKIEEGVWKLLMGW 410 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~-~~~~~~~~~~~~~~~~~~ 410 (411)
++-+.-.|+||-|+++-..|+++|||+.++++. ......|+ |.|||.- .|. ....+++++.+++.|+.+
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSR--P~~~~~~~-Y~FfVDi-eg~~~~~~~~~l~~L~~~~~~~ 85 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESR--PSRLNKDE-YEFFINL-DKKSAPALDPIIKSLRNDIGAT 85 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec--cCCCCCce-EEEEEEE-EcCCCHHHHHHHHHHHHHhCCC
Confidence 455566899999999999999999999999998 55455564 5699984 454 222223788888877643
No 95
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.92 E-value=0.0063 Score=46.57 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=41.5
Q ss_pred EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208 247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL 312 (411)
Q Consensus 247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L 312 (411)
+.|.+.||+|+|++|+.++++.|+||.+..+. +.+ . .+++.. +.+.++++.|.++|
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~----i~l~i~---v~~~~~L~~li~~L 58 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R----IYLNFP---TIEFEKLQTLMPEI 58 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e----EEEEeE---ecCHHHHHHHHHHH
Confidence 68999999999999999999999999988876 332 2 233321 33456777776665
No 96
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.0061 Score=45.42 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=41.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc-----CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD-----GKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td-----g~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
+.|..+|+||+|++++.+|+++|+||.+...... .......|.+........+.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3577899999999999999999999998877542 232445555554332344455555554
No 97
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.88 E-value=0.0059 Score=46.76 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=44.4
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHHH
Q 015208 340 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWKL 406 (411)
Q Consensus 340 ~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~~ 406 (411)
-+.-.|+||.|+++...|+++|+||.+.++. |..+... .+.||+.- .|..-..+ .+++.+++.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr-p~~~~~~--~~~f~id~-~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESR-PSRKGLW--EYEFFVDF-EGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee-ecCCCCc--eEEEEEEE-ECCCCCHHHHHHHHHHHHh
Confidence 3455799999999999999999999999776 4444344 56688885 45422222 256666653
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.88 E-value=0.0064 Score=47.73 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=46.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
.|.+...|+||.|++|++.|+..|+||.+-.+..+.+..+--.-.+.+ .| ++..++++.+.|.+..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~---d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ---DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC---CHHHHHHHHHHHhCCc
Confidence 588999999999999999999999999999887655433322222222 12 3455677777776644
No 99
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.86 E-value=0.0052 Score=45.47 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=35.8
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccC--cceeeEEEEEE
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLL 386 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g--~~~~~~~~f~v 386 (411)
+.+...|+||++.+++.+|++.|+||.++.+. ..+ +.. ...|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~~~~--~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG--RKEKGGIA--YMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe--ccCCCCEE--EEEEEc
Confidence 67889999999999999999999999999988 433 344 444555
No 100
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.85 E-value=0.0059 Score=54.05 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=46.8
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
+.+++.-.|+||.|.+|+.+|+++|+||.++.+. ..+... ..++.++. +| +.+ .++++.+||..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~--~t~~~~--~sriti~V-~~---d~~-~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG--PTEDPD--LSRMTIVV-VG---DDK-VLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe--ecCCCC--EEEEEEEE-EC---CHH-HHHHHHHHHhc
Confidence 3688899999999999999999999999999988 333233 44455554 34 333 57777777643
No 101
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0095 Score=44.46 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
.+++|..+|+||.+++++.+|.++|+||....++..+.. .++.+... +.+.+.+.|++
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~---~~~~~~~~L~~ 59 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVS---DPDKAKEALKE 59 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEEC---CHHHHHHHHHH
Confidence 468899999999999999999999999999998764332 34444331 23445455554
No 102
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.78 E-value=0.011 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=32.0
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~ 35 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP 35 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence 4789999999999999999999999999999977
No 103
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.75 E-value=0.0051 Score=46.40 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=41.2
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 340 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 340 ~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
-+.+.|+||.+.+++.+|+++|+||.++.+.....++.+ ...|.+. + +.... +++.+++
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~--~~~i~v~---~-~~~~~-~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEA--LMVLSVD---E-PVPDE-VLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEE--EEEEEeC---C-CCCHH-HHHHHHc
Confidence 468899999999999999999999999987632234444 3434333 3 34445 6666654
No 104
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.014 Score=43.71 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=37.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCC-eEEEEEEEE
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT 157 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~-~~~d~F~V~ 157 (411)
+.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 568889999999999999999999999998877663222 333345553
No 105
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.73 E-value=0.009 Score=46.42 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=44.4
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~ 405 (411)
++.+.-.|+||.|+++...|+++|+||.++++. ..+...| .+.|||.. +|..-..+ .+++.+++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~-~~~f~vd~-~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLW-EYVFFIDF-EGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCc-eEEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence 566777899999999999999999999999876 3333333 56788875 34311222 25555555
No 106
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.68 E-value=0.0074 Score=46.36 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=38.9
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCC
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG 391 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g 391 (411)
+-+.-.|+||-|+++-..|+++|||+.++++. ...+..|+ |.|||.- .|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSR--P~~~~~~~-y~Ffvd~-~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESR--PSRRNGSE-YEFFVDC-EV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECC--CCCCCCce-EEEEEEE-Ec
Confidence 34455789999999999999999999999998 44455554 5588884 45
No 107
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.67 E-value=0.015 Score=51.39 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=50.2
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
..+.|...|+||.|++|++.|+.+|+||.+..+..+. .+...-+|.|.. ++...++|.+.|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 3688999999999999999999999999999887654 455555566632 2455677777777754
No 108
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.0085 Score=44.70 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=36.5
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
..+.|..+|+||.|++++..|+++|+||.+..++.. ++. -++.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~-~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT-SEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec-CCC--CEEEE
Confidence 467889999999999999999999999999998773 343 34554
No 109
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.013 Score=44.54 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=42.4
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHH-HHHHHHHHH
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRL 312 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~-~~~~l~~~L 312 (411)
.+.+.+.||||+|++|+++++++|+||....... ..++.+.-.|.+. +.+.+ ++++|.+.|
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~-----v~~~~~~l~~l~~~L 63 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISID-----TSTMNGDIDELLEEL 63 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEE-----cCchHHHHHHHHHHH
Confidence 4789999999999999999999999999665431 1223344334444 23334 667776665
No 110
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.66 E-value=0.0073 Score=43.37 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=38.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEc
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIG 68 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~ 68 (411)
+.+..+|+||.++++++.|.++|+||...+++. ++...+..|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 357889999999999999999999999999876 4344777787774
No 111
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.016 Score=43.84 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=35.4
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEE
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFV 156 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V 156 (411)
-|.+.+.|++|++++++.+|+++|+||.+....+..+ +.+.-.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 4778899999999999999999999999887755323 444333433
No 112
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.64 E-value=0.014 Score=52.43 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=47.7
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
..+.+.+.|+||+|++++++|+.+|+||.+..+..+.+ |.. .+.+.-+. ++..++.|.+.|.+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~----~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPG----DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEEC----CHHHHHHHHHHHHHHhH
Confidence 47899999999999999999999999999998865333 322 23332222 12336788888888554
No 113
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.63 E-value=0.0098 Score=52.85 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=45.8
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
+.+++.-.|+||.|.+|+.+|+++|+||.++.+. ...... ..++.++. +| +.. .++++.+||..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~--~te~~~--~sriti~V-~~---~~~-~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG--PTEDPG--LSRMTIVT-SG---DEQ-VIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee--ecCCCC--EEEEEEEE-EC---CHH-HHHHHHHHHhc
Confidence 4688899999999999999999999999999987 332222 34455553 23 333 56667666643
No 114
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.0081 Score=46.26 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=45.9
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHH
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL 406 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~ 406 (411)
+-+.-.|+||-|+++-..|+.+|+|+.++++. ......|+ |.|||.- .|..-.-+++++.+++.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSR--P~~~~~~~-y~F~id~-e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESR--KSKRRSSE-FEIFVDC-ECDQRRLDELVQLLKRE 66 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec--cCCCCCce-EEEEEEE-EcCHHHHHHHHHHHHHh
Confidence 34445799999999999999999999999998 44445554 5699885 45432322356666653
No 115
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.62 E-value=0.025 Score=43.87 Aligned_cols=50 Identities=22% Similarity=0.368 Sum_probs=38.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcC
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 159 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~ 159 (411)
+.+.+..+|+||.|+++...|+++|+||.+-......++...-.|+|...
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 45677789999999999999999999998887665444445556777544
No 116
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.61 E-value=0.019 Score=51.04 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=50.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
..+.+...|+||.|++|++.|+.+|+||.+..+..+. .+...-+|.|.. ++..++++...|.+...
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcccc
Confidence 4688999999999999999999999999998887544 455555555532 24557778777777553
No 117
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.60 E-value=0.017 Score=44.64 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=47.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEE-EEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d-~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
..+.+...|+||.|++++++|+..|+||.+..+.-+.++...- ++.| . + +..++.|.+.|.+..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcCc
Confidence 5789999999999999999999999999999987655544333 3334 2 1 334667777766643
No 118
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.58 E-value=0.023 Score=42.06 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=43.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
.+.+.+.|+||++++++..|+++|++|.+....+. .++.+.-.|.+... + ..++.+.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-----D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-----H-HHHHHHHHHHhC
Confidence 36778999999999999999999999999888764 34555545555321 2 344555454443
No 119
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.014 Score=43.63 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=30.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
+.+.+..+|+||.|.++++.|+++|+||.+....
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~ 35 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL 35 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence 4678899999999999999999999999977655
No 120
>PRK08577 hypothetical protein; Provisional
Probab=96.54 E-value=0.042 Score=47.37 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=50.3
Q ss_pred EEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-c-CcEEEEEEEEEcCCC-ccHHHHHHHHHh
Q 015208 8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-D-GKWCYIVFWVIGDSQ-TRWGLLKKRLMG 83 (411)
Q Consensus 8 ~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-d-g~~~~d~f~V~~~~g-~~~~~l~~~L~~ 83 (411)
.++...+......+.+.+.+.|+||+|++++++|+++|.||.+....+ . +..+.-.|.+.-++. ...+.+.+.|++
T Consensus 44 ~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~ 122 (136)
T PRK08577 44 IHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKK 122 (136)
T ss_pred EEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHc
Confidence 333333444555889999999999999999999999999999888755 2 332334444443332 234455555544
No 121
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.018 Score=43.58 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=41.8
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeec-C-ceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-G-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~-g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
.+.+.+.||||+|.+++++|+++|++|...... +. + +.+. +.++.. ..+.++++.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~--~~~~~~~~~-~~i~~~----~~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK--EADGGETAP-VVIVTH----ETSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc--ccCCCCcee-EEEEEc----cCCHHHHHHHHHHHH
Confidence 578899999999999999999999999977764 22 2 3333 233331 233456666666553
No 122
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.53 E-value=0.0048 Score=45.97 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 345 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 345 DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
|+||+|..|+.+|+..|+||.++.+. ...... ..++.+.. .|.+-..++++.++.|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~--~~~~~~--~~riti~v-~~~~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVG--PTEDPG--ISRITIVV-SGDDREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEE--E-SSTT--EEEEEEEE-ES-CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEee--ecCCCC--EEEEEEEE-eeCchhHHHHHHHHhc
Confidence 68999999999999999999999999 433333 44566653 3433222334444443
No 123
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.52 E-value=0.0031 Score=47.14 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=41.4
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
+-+.+.||||++.+++..|++.|+||..+.+. ..++.+ ...|.+..+ ...+ +++.+++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a--~~~~~~~~~----~l~~-li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIG--YVVIDIDSE----VSEE-LLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEE--EEEEEcCCC----CCHH-HHHHHHc
Confidence 44688999999999999999999999998776 554555 444444432 2233 6666664
No 124
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.026 Score=41.96 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=41.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc-CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD-GKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td-g~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
++.+.++|+||.+++++..|+++++||.+.....+ +....-.|.+... ...+.+.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV--GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc--ccHHHHHHHHhC
Confidence 57889999999999999999999999998887663 2324344555533 233344444443
No 125
>PRK08577 hypothetical protein; Provisional
Probab=96.48 E-value=0.025 Score=48.81 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCH-HHHHHHHHHH
Q 015208 239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP-SKQNGLSSRL 312 (411)
Q Consensus 239 ~~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~-~~~~~l~~~L 312 (411)
...+..+.+.+.+.||||+|++++++|+++|++|.+....+...++.+.-.|.+. +++. .+++.+.+.|
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve-----v~~~~~~l~~l~~~L 120 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD-----LSKSDIDLEELEEEL 120 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE-----eCCchhhHHHHHHHH
Confidence 3455688999999999999999999999999999977765321133343334444 2221 3556666665
No 126
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.46 E-value=0.012 Score=43.43 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=38.2
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV 156 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V 156 (411)
+.+...|++|++++++.+|+++|+||.+....... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999987633 3666667766
No 127
>PRK04435 hypothetical protein; Provisional
Probab=96.42 E-value=0.037 Score=48.50 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
+.....+....|.+...|+||+|++|+..|+++|+||.........+|.+.-.|.|...+. ...++.|.+.|++
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~----~~~L~~Li~~L~~ 134 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM----EGDIDELLEKLRN 134 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh----HHHHHHHHHHHHc
Confidence 3445677889999999999999999999999999999988765534576666666644321 1245555444444
No 128
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.028 Score=41.55 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=35.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 156 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V 156 (411)
+.+..+|+||.+++++..|+++|+||.+...... .++...-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 5778999999999999999999999998887652 24554444444
No 129
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.018 Score=42.21 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=35.1
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV 156 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V 156 (411)
+.+..+|+||-|+++++.|+++|+||.+...+... .+...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67788999999999999999999999888776532 2454444444
No 130
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.35 E-value=0.019 Score=43.20 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=37.8
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEEEc
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD 158 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V~~ 158 (411)
+.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4568899999999999999999999988877553 3567776776643
No 131
>PRK04435 hypothetical protein; Provisional
Probab=96.33 E-value=0.035 Score=48.65 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=53.8
Q ss_pred CCcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-cHHHHHHHH
Q 015208 5 YDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-RWGLLKKRL 81 (411)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-~~~~l~~~L 81 (411)
|++.|.--..........+.+...|+||++++|.++|+.+|+||....... +|. +--.|.+...+.. ..+.+.+.|
T Consensus 54 ykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~-a~vs~tVevs~~~~~L~~Li~~L 132 (147)
T PRK04435 54 YKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGR-ANVTISIDTSSMEGDIDELLEKL 132 (147)
T ss_pred CCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCE-EEEEEEEEeCChHHHHHHHHHHH
Confidence 445555543444556789999999999999999999999999999887754 453 5456666654332 344444444
Q ss_pred Hh
Q 015208 82 MG 83 (411)
Q Consensus 82 ~~ 83 (411)
++
T Consensus 133 ~~ 134 (147)
T PRK04435 133 RN 134 (147)
T ss_pred Hc
Confidence 43
No 132
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.027 Score=41.87 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=36.4
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
.+.+.++|+||.|++++..|+++++||.+....+..++...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 5788999999999999999999999999888766333444434444
No 133
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.24 E-value=0.033 Score=41.16 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=41.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-c-CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-D-GKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-d-g~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
+.+.++|+||.+++++..|+++|+||....... + +....-.|.+.+. ..+.+.+.|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC---CCHHHHHHHHc
Confidence 578899999999999999999999999888755 2 3324344555543 34455555554
No 134
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.13 E-value=0.027 Score=41.29 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=41.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc---CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD---GKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td---g~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
+.+..+|+||-+++++++|+++|.||.+...+.. |. ..-.|.+.. .+.+.+.|++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~-~~v~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK-ALLIFRTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe-EEEEEEeCC-----HHHHHHHHHH
Confidence 6788899999999999999999999998887552 44 545666653 3455555554
No 135
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.12 E-value=0.047 Score=40.38 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=43.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
.+.+.+.|+||++++++.+|+++|.||......+. +..+.-.|.+..++ ...+.+.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-HHHHHHHHHHhC
Confidence 36788999999999999999999999998888653 33355566666433 344444444443
No 136
>PRK06635 aspartate kinase; Reviewed
Probab=96.04 E-value=0.7 Score=47.17 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=67.2
Q ss_pred eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208 109 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 187 (411)
Q Consensus 109 ~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~ 187 (411)
...|++.+ .++||.++++..+|+++|+||.........+|..--.|.|.. ++.++..+.|.+ +...
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~---- 328 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDE---- 328 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHH----
Confidence 34455554 678999999999999999999865433212223444555522 223333333333 1110
Q ss_pred ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEe---CCchhHHHHHHHH
Q 015208 188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIMRT 264 (411)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~---~DRpGLL~~i~~~ 264 (411)
. . ...|.+ .++..++++.| +|+||++.++.++
T Consensus 329 --------~----------~-----------------------~~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~ 363 (404)
T PRK06635 329 --------I----------G-----------------------AESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEA 363 (404)
T ss_pred --------c----------C-----------------------cceEEE----cCCeEEEEEECCCCCCCchHHHHHHHH
Confidence 0 0 012322 23557788876 6899999999999
Q ss_pred HHhCCeEEEE
Q 015208 265 LKDYNIQVSY 274 (411)
Q Consensus 265 l~~~g~~i~~ 274 (411)
|++.|+||..
T Consensus 364 La~~~Ini~~ 373 (404)
T PRK06635 364 LAEEGINIQM 373 (404)
T ss_pred HHHCCCCEEE
Confidence 9999999985
No 137
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.04 E-value=0.056 Score=38.87 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=35.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
|.+.++|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 467799999999999999999999999998876333444444444
No 138
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.99 E-value=0.0091 Score=44.53 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=35.5
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
+.+.+.|+||++++++..|+++|+||......+ .++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEc
Confidence 567899999999999999999999998876654 34666555555
No 139
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.96 E-value=0.045 Score=39.40 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=40.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcC-cEEEEEEEEEcCCCccHHHHHHHH
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDG-KWCYIVFWVIGDSQTRWGLLKKRL 81 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg-~~~~d~f~V~~~~g~~~~~l~~~L 81 (411)
+.+.++|+||++..++..|.+++++|.+..+...+ .+....|.+..++....+.+.+.|
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 60 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKL 60 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHH
Confidence 35778999999999999999999999999886632 434445656544432333343333
No 140
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.95 E-value=0.063 Score=36.61 Aligned_cols=33 Identities=39% Similarity=0.500 Sum_probs=30.2
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
|.+.++|++|.++++++.|+.+|++|.......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 467899999999999999999999999998766
No 141
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.92 E-value=0.055 Score=40.96 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.4
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
+.+.-+|+||-|++++..|+++|.||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 577889999999999999999999998876554
No 142
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.83 E-value=0.098 Score=39.22 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
+.+.+..+|+||.+++++++|+++|+||.+..... .+....-+|.+.... .+.+.+.|++
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~---~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN---PRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC---HHHHHHHHHH
Confidence 57899999999999999999999999999887643 222255667665322 2355555654
No 143
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.80 E-value=0.028 Score=47.10 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=46.0
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
++-+.-.|+||-|+++-..|+++|||+.++++. ..+...|+ |.|||.- .|..-+-+.+++.+++
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESR--P~~~~~~e-Y~FfIdi-eg~~~~~~~aL~~L~~ 106 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESR--PSRKEGGD-LEVLVRC-EVHRSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECC--cCCCCCce-EEEEEEE-EeCHHHHHHHHHHHHH
Confidence 555666899999999999999999999999998 55555564 5588874 4433222224555554
No 144
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.80 E-value=0.054 Score=40.97 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=40.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE----cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST----DGKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t----dg~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
+.+.-+|+||-+++++..|+++|.||.+..... .+. -...+.+.......++.+.+.|++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~-~~~~v~v~~e~~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGM-RRVFIRVTPMDRSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCc-cEEEEEEEEecchHHHHHHHHHhC
Confidence 678899999999999999999999999887644 233 234444443111124455555543
No 145
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=95.77 E-value=1.1 Score=46.49 Aligned_cols=110 Identities=21% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCCceEEEEEeCC---chhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 241 SPGHTLVQIVCQD---HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 241 ~~~~tvi~v~~~D---RpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
.++.+.|++.+.- ++|.+.++..+|.++|++|. -|.+ .-....=.|++.. .......+.|.+...
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~--~I~q--~~~~~~i~~~v~~--------~~~~~a~~~l~~~~~ 371 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVD--LITQ--SISEVSISFTVPE--------SDAPRALRALLEEKL 371 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEE--EEEe--ccCCCeEEEEEch--------hhHHHHHHHHHHHHh
Confidence 3567788888643 56999999999999999998 3431 1111112355542 122222233333332
Q ss_pred CCc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 318 QPL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 318 ~~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
... .+.+. ++. ..+.++|. ..||+...+..+|++.++||....++
T Consensus 372 ~~~~~v~~~-~~~-------a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS 420 (447)
T COG0527 372 ELLAEVEVE-EGL-------ALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS 420 (447)
T ss_pred hhcceEEee-CCe-------eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC
Confidence 221 12221 211 26777776 78999999999999999999999865
No 146
>PRK11899 prephenate dehydratase; Provisional
Probab=95.66 E-value=0.042 Score=53.32 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=47.0
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~ 405 (411)
++-+.-.||||.|+++-..|+++|||+.++++. ..+++.|+ |.||+.- .|..-+++ ..++.|++
T Consensus 196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSR--P~~~~~~~-Y~F~id~-eg~~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESY--MVGGSFTA-TQFYADI-EGHPEDRNVALALEELRF 261 (279)
T ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEee--ecCCCCce-EEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence 344444799999999999999999999999998 66666774 5599885 56544444 14555544
No 147
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.54 E-value=0.092 Score=35.72 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 015208 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST 55 (411)
Q Consensus 23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t 55 (411)
|.+.++|++|++++++++|.++|++|.......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 468899999999999999999999999998865
No 148
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.54 E-value=0.18 Score=37.76 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.7
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 156 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V 156 (411)
+.+.+..+|+||.|.+++..|+++|+||.+....-. .++...-.|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 468889999999999999999999999987765432 23455555655
No 149
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.52 E-value=0.043 Score=50.94 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=45.2
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHH
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 402 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~ 402 (411)
+.+-+.-.||||++..|+.+|.++||||..+.+.|...|+.| + +.+. . +.+++.+ ++|.
T Consensus 149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A--i--~vl~-v-D~~v~~~-vl~~ 207 (208)
T TIGR00719 149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA--L--LTIE-I-DKNIDDH-IKDA 207 (208)
T ss_pred cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE--E--EEEE-e-CCCCCHH-HHhh
Confidence 367788899999999999999999999999999976677777 2 2333 2 3455555 4443
No 150
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.41 E-value=0.014 Score=46.09 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=26.8
Q ss_pred EEEEEeCC-chhHHHHHHHHHHhCCeEEE
Q 015208 246 LVQIVCQD-HKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 246 vi~v~~~D-RpGLL~~i~~~l~~~g~~i~ 273 (411)
+|++.|+| +.|+++.++++|+++|+||.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~ 29 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNID 29 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHH
Confidence 58999999 99999999999999999997
No 151
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.40 E-value=0.027 Score=42.91 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=48.5
Q ss_pred EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEE--ecCCCcCCCHHHHHHHHHHH
Q 015208 247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM--QADGKKIVDPSKQNGLSSRL 312 (411)
Q Consensus 247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v--~~~g~~~~~~~~~~~l~~~L 312 (411)
|++.|+-||-.+||++-+|+.+|+-|.+|.|.....+++-..+|-+ ...+..++.+....++...+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv 70 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRV 70 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHH
Confidence 6889999999999999999999999999999865556676666643 33344455444445555443
No 152
>PRK07334 threonine dehydratase; Provisional
Probab=95.35 E-value=0.1 Score=53.36 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=49.0
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC----CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~----~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
-.+.|.|.+.||+|+|++|+.+|++.++||.+....+. .++.+.-.|.|.-. +.+.++++.+.|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999988763 34665545555322 34456666555554
No 153
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.19 E-value=0.017 Score=45.57 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=47.0
Q ss_pred EEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEE-----c-----CcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 23 ITVNCPD-KTGLGCDLCRIILFFGLSIVRGDVST-----D-----GKWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 23 V~v~~~D-r~Gl~~~i~~~L~~~glnI~~a~i~t-----d-----g~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
|+|+|+| ..|++++++++|+++|+||.+-+-.+ . +. ....|.|..++ .+.+.+++.|.+.-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~-~~~e~~v~~~~-~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPK-ACVEFSVRGQP-ADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCc-EEEEEEEeCCC-CCHHHHHHHHHHHh
Confidence 7999999 99999999999999999998655422 1 23 45778888665 56777877776543
No 154
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.01 E-value=0.18 Score=37.48 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 29 DKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 29 Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
|+||.+.+++++|...|+||.+-.+.. ++...--++.|... ....+.+.+.|++..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-chhHHHHHHHHhccC
Confidence 789999999999999999999999965 55534344545432 234566766777643
No 155
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.95 E-value=0.27 Score=39.29 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=45.3
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
+.+.|.+..+|+||-|+++...|+.+|+|+.+-.-.-..+....-.|||.-. |. . ...++.+-+.|.+.+.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~-~-~~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK-S-APALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-C-CHHHHHHHHHHHHHhC
Confidence 4467777779999999999999999999996554443233333446777433 33 1 2334444444555443
No 156
>PRK08210 aspartate kinase I; Reviewed
Probab=94.67 E-value=0.78 Score=46.87 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCc-hhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208 242 PGHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 320 (411)
Q Consensus 242 ~~~tvi~v~~~DR-pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 320 (411)
++...+++.+.+. ||.+.+|..+|.++|++|..-..+ ... -.|++.. +..+++.+.|.. +..
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~----~~~--is~~v~~--------~~~~~a~~~l~~-~~~-- 331 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF----PTE--VVFTVSD--------EDSEKAKEILEN-LGL-- 331 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec----Cce--EEEEEcH--------HHHHHHHHHHHH-hCC--
Confidence 4566778877665 999999999999999999955322 121 1355431 233444444433 221
Q ss_pred eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208 321 RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 368 (411)
Q Consensus 321 ~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~ 368 (411)
.+.+. .+. ..+.|.|. ++||++..+..+|++.|+||....
T Consensus 332 ~v~~~-~~~-------a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~ 374 (403)
T PRK08210 332 KPSVR-ENC-------AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA 374 (403)
T ss_pred cEEEe-CCc-------EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe
Confidence 22221 111 26778886 799999999999999999997644
No 157
>PRK07334 threonine dehydratase; Provisional
Probab=94.66 E-value=0.21 Score=51.06 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=47.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeee---cCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t---~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
..-|.|.+.||||+|.+|+.+|++.++||.+....+.. .++.+.-.|.+. +.+.++++.+.+.|..
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999988765210 123333233343 4556788888777643
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.60 E-value=0.23 Score=54.34 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=48.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
....|.|.+.||+|||.+|+.++++.++||....+.+...++.+.-.|.+. +.+.+++..|...|.
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 446889999999999999999999999999988876321134444445454 555667777777653
No 159
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.46 E-value=4.3 Score=41.34 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=66.7
Q ss_pred ceEEEEEE---ecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccc
Q 015208 108 DVFLLKLS---CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM 184 (411)
Q Consensus 108 ~~t~i~v~---~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~ 184 (411)
+...|+|. -.+++|+++++...|+++|++|...... ..+ .--.|.|. .+..++..+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~-~~Is~~V~--------~~d~~~a~~~L~~~~~~-- 325 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSE-TSISLTVD--------ETDADEAVRALKDQSGA-- 325 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCC-ceEEEEEe--------HHHHHHHHHHHHHHHHh--
Confidence 45567777 4678999999999999999999644321 112 11245552 12233333333332211
Q ss_pred cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHHH
Q 015208 185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI 261 (411)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i 261 (411)
. . ...+.++ .+..+|.+.|. ++||+++.+
T Consensus 326 -----------~----------~-----------------------~~~i~~~----~~~a~IsvVG~~~~~~~g~~a~i 357 (401)
T TIGR00656 326 -----------A----------G-----------------------LDRVEVE----EGLAKVSIVGAGMVGAPGVASEI 357 (401)
T ss_pred -----------c----------C-----------------------CceEEEe----CCeEEEEEECCCcccCccHHHHH
Confidence 0 0 0123322 35678888885 799999999
Q ss_pred HHHHHhCCeEEE
Q 015208 262 MRTLKDYNIQVS 273 (411)
Q Consensus 262 ~~~l~~~g~~i~ 273 (411)
.++|.+.|+||.
T Consensus 358 ~~~L~~~gIni~ 369 (401)
T TIGR00656 358 FSALEEKNINIL 369 (401)
T ss_pred HHHHHHCCCcEE
Confidence 999999999998
No 160
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.43 E-value=0.93 Score=46.22 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=67.0
Q ss_pred CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++...|++.| .++||++.++..+|.+.|+++..-.-. ..+ ..=.|++.. +..++..+.|......
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~---~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT---PSE-TSISLTVDE--------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC---CCC-ceEEEEEeH--------HHHHHHHHHHHHHHHh
Confidence 3567788884 678999999999999999999833221 111 111244431 2233344444433211
Q ss_pred -C-ceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208 319 -P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 368 (411)
Q Consensus 319 -~-~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~ 368 (411)
. ..+.+ .+.. ..+.+.|. ++||++..+.++|++.|+||....
T Consensus 326 ~~~~~i~~-~~~~-------a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 326 AGLDRVEV-EEGL-------AKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG 372 (401)
T ss_pred cCCceEEE-eCCe-------EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 1 11111 1211 26778886 799999999999999999998655
No 161
>PRK06291 aspartate kinase; Provisional
Probab=94.36 E-value=0.82 Score=47.68 Aligned_cols=109 Identities=19% Similarity=0.122 Sum_probs=68.7
Q ss_pred CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++...|++.+. +.||+++++..+|.++|++|..-.-+ +....+ .|.+.. +..+...+.|...+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~--sse~sI--sf~V~~--------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG--SSESNI--SLVVDE--------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec--CCCceE--EEEEeH--------HHHHHHHHHHHHHHHH
Confidence 45678888875 78999999999999999999843321 112112 244442 2223333334333322
Q ss_pred --CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 319 --PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 319 --~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
...+++. .. -..+.+.|. ++||+..++..+|++.|+||.-..-.
T Consensus 387 ~~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg 435 (465)
T PRK06291 387 GLVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG 435 (465)
T ss_pred hcCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence 1112221 11 126788886 79999999999999999999866533
No 162
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.22 E-value=0.54 Score=35.70 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=33.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
+.+..+|+||-|+++...|+++|+||.+-.-.-..+....-.|+|.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 34556899999999999999999999776544323323334566643
No 163
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.18 E-value=0.075 Score=54.46 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=49.4
Q ss_pred ccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 335 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 335 ~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
.++.+-+.-.|+||++..||.+|+++|+||..+... ..|+.+ +.+.+-++ ++.++ +++.+++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~~~-~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYAEE-ALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCcHH-HHHHHHc
Confidence 456899999999999999999999999999999998 666666 44445555 45556 6777775
No 164
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.07 E-value=0.25 Score=54.08 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=48.9
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+.. ++.+.-.|.|.-. +-+.+.++-..|++
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999987643 5666556665322 23455555555443
No 165
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=94.05 E-value=0.23 Score=43.88 Aligned_cols=60 Identities=25% Similarity=0.224 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
-+.+.+.|+||.|.+++++++++|.||.-++.+. ||...+..|.+..- .+.+.+.++++.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi--~d~e~l~~~lks 65 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI--DDFEKLLERLKS 65 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC--CCHHHHHHHhhc
Confidence 4678899999999999999999999999999976 88756566655532 356666555543
No 166
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.91 E-value=0.21 Score=50.79 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=47.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~ 405 (411)
++-+.-.|+||.|+++-..|+.+|||+.++++. ..+++.|+ |.|||.- .|..-+++ ..++.+++
T Consensus 299 sl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSR--P~~~~~~~-Y~Ffid~-eg~~~d~~~~~aL~~l~~ 364 (386)
T PRK10622 299 TLLMATGQQAGALVEALLVLRNHNLIMTKLESR--PIHGNPWE-EMFYLDV-QANLRSAEMQKALKELGE 364 (386)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEee--ecCCCCce-EEEEEEE-eCCCCCHHHHHHHHHHHH
Confidence 455556799999999999999999999999998 56666664 4499885 56544433 14455544
No 167
>PRK06635 aspartate kinase; Reviewed
Probab=93.90 E-value=0.7 Score=47.15 Aligned_cols=110 Identities=19% Similarity=0.114 Sum_probs=66.2
Q ss_pred CceEEEEE-eCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208 243 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 321 (411)
Q Consensus 243 ~~tvi~v~-~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 321 (411)
+...|++. -.++||++.++..+|.+.|++|.....+. +.++...=.|.+.. +..++..+.|... ...+.
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~~-~~~~~ 330 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEEV-KDEIG 330 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHHH-HHHcC
Confidence 44556655 36789999999999999999999543221 01101221244431 2333333444331 11111
Q ss_pred ---EEEeccCCCccccccceEEEEe---CCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 322 ---VTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 322 ---~~i~~~~~~~~~~~~~~~~v~~---~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+. +. ...+.+.| .++||++.++.++|++.|+||.....+
T Consensus 331 ~~~i~~~-~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss 377 (404)
T PRK06635 331 AESVTYD-DD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS 377 (404)
T ss_pred cceEEEc-CC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec
Confidence 1111 11 12677877 489999999999999999999887643
No 168
>PLN02551 aspartokinase
Probab=93.88 E-value=1.1 Score=47.54 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
.++.+.|+|.+. +++|++..+...|.++|++|.. |+ +-.... .|.++.. .+...+.+++.-..|...+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Is--sSe~sI--s~~v~~~--~~~~~~~i~~~l~~l~~el~ 434 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VA--TSEVSI--SLTLDPS--KLWSRELIQQELDHLVEELE 434 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Ee--ccCCEE--EEEEehh--HhhhhhhHHHHHHHHHHHhh
Confidence 345688899876 6899999999999999999994 44 222222 3566532 11111111111111222333
Q ss_pred CCceEEEeccCCCccccccceEEEEeC--CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 318 QPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+...+.+. .+ ...+.++|. .+||+...+-.+|++.||||.-....
T Consensus 435 ~~~~V~v~-~~-------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 435 KIAVVNLL-QG-------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred cCCeEEEe-CC-------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 32223221 11 125677765 68999999999999999999887754
No 169
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.70 E-value=0.32 Score=53.21 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=48.3
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
-.+.|.|.+.||+|+|++|+.+++..++||.++...+..++.+.-.|.|.-. +-+.+.+|-..|+.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4568899999999999999999999999999999877444565555555322 23445555444443
No 170
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.37 E-value=0.33 Score=46.90 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=47.2
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~ 405 (411)
++-+.-.|+||-|+++-..|+.+|||+.++++. .-+...|+ |.|||.- .|..-++. +.++.|++
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR--P~k~~~~~-Y~F~iD~-eg~~~~~~v~~AL~el~~ 261 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESR--PLKTGLGE-YLFFIDI-EGHIDDPLVKEALEELKE 261 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCcceeeEeec--ccCCCCee-EEEEEEE-ecCcCcHhHHHHHHHHHh
Confidence 445555599999999999999999999999998 66667764 4488875 45544422 25666654
No 171
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.35 E-value=0.54 Score=51.44 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=50.8
Q ss_pred EEEecCCC-CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHH
Q 015208 234 VTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSR 311 (411)
Q Consensus 234 V~i~~~~~-~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~ 311 (411)
|.++.... .....|.|.+.||+|+|.+|+.++++.++||.+.... +.. +.+.-.|-+. +.+.+++..|...
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~i~~~ 687 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE--EKDGRVYSAFIRLT-----ARDRVHLANIMRK 687 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence 44543322 3456889999999999999999999999999988876 343 3434334444 4555677777666
Q ss_pred H
Q 015208 312 L 312 (411)
Q Consensus 312 L 312 (411)
|
T Consensus 688 L 688 (702)
T PRK11092 688 I 688 (702)
T ss_pred H
Confidence 5
No 172
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.98 E-value=0.52 Score=43.69 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=41.9
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 156 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V 156 (411)
..+....+-+.-.|+||.+..++..|.++|+||..+++... .+|.++-+..|
T Consensus 144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 33445566777899999999999999999999999988753 36778777766
No 173
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.75 E-value=0.55 Score=48.17 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=43.1
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
.....|.+.-.|+||.++.|+..|+++|+||...+.++ .++.++-+|.+
T Consensus 336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~ 384 (409)
T PRK11790 336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV 384 (409)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence 36678888999999999999999999999999998876 77888877766
No 174
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.72 E-value=0.54 Score=51.38 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=47.8
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~ 177 (411)
.-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-. +-..+.+|-..|+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~ 673 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIK 673 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHh
Confidence 34568999999999999999999999999999999977445655444555222 2344555544444
No 175
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.67 E-value=0.59 Score=34.78 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCceEEEEEeC----CchhHHHHHHHHHHhCCeEEEEEE
Q 015208 242 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGR 276 (411)
Q Consensus 242 ~~~tvi~v~~~----DRpGLL~~i~~~l~~~g~~i~~a~ 276 (411)
.++..|+|.|+ |.||+++.++..|++.|++|....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 46778899988 899999999999999999998444
No 176
>PRK11899 prephenate dehydratase; Provisional
Probab=92.67 E-value=0.81 Score=44.43 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=39.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCc
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK 298 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~ 298 (411)
.|.|-+..+|+||.|+++..+|+++|+|+. +|.+-..+ ....=+||++.+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECCC
Confidence 466666668999999999999999999998 55542333 334446788877753
No 177
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.53 E-value=0.7 Score=34.51 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=41.0
Q ss_pred EEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 248 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 248 ~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
.+.-+||||=|..+..++.. |.||.+-.-.. .+.....+++.-. +.++++.+++.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~~~~v~v~ie----~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGDEARVLVGIQ----VPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCCceEEEEEEE----eCCHHHHHHHHHHHHH
Confidence 56779999999999999999 99998665542 2222333443321 3346788888888754
No 178
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.51 E-value=0.85 Score=49.88 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=46.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRL 312 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L 312 (411)
..+.|.|.+.||+|+|.+|+.++++.++||.+..+. +.. +.+.-.|-+. +.+-+++..|...|
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L 672 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTK--TYGKREAILNITVE-----IKNYKHLLKIMLKI 672 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 456889999999999999999999999999988876 343 3333223333 45556777776665
No 179
>PRK09034 aspartate kinase; Reviewed
Probab=92.47 E-value=1.8 Score=45.01 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++.+.|++.+ .++||+++++..+|+++|++|..- + +....+ .|++... .+.. ..+.++.+.|...+.
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~si--s~~v~~~--~~~~-a~~~~l~~el~~~~~- 375 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDL--SIIIRER--QLTP-KKEDEILAEIKQELN- 375 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEE--EEEEeHH--HhhH-HHHHHHHHHHHHhhC-
Confidence 3457888875 678999999999999999999853 3 122222 2666521 1110 011233333332221
Q ss_pred CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 319 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 319 ~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
...+.+. .. -..+.+.|. ++||++.++-.+|++.|+||.-....
T Consensus 376 ~~~I~~~-~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~ 422 (454)
T PRK09034 376 PDELEIE-HD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG 422 (454)
T ss_pred CceEEEe-CC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 1112111 11 126778765 78999999999999999999888654
No 180
>PRK08210 aspartate kinase I; Reviewed
Probab=92.46 E-value=6.1 Score=40.33 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=66.7
Q ss_pred CcEEEEEEcCCC-CChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeee
Q 015208 19 DPCVITVNCPDK-TGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYY 97 (411)
Q Consensus 19 ~~~~V~v~~~Dr-~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~ 97 (411)
+...|+|.+.+. +|.++++...|.++|.||.-...+.+ . -.|.+.. .+.+...+.|++.. ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~---~~~~~a~~~l~~~~---~~------- 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSD---EDSEKAKEILENLG---LK------- 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcH---HHHHHHHHHHHHhC---Cc-------
Confidence 456777776555 99999999999999999987644422 1 2455552 12233333344321 00
Q ss_pred cccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 015208 98 RAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEK 139 (411)
Q Consensus 98 ~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~ 139 (411)
.....+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 333 -----v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 -----PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred -----EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 012345678888874 7899999999999999999974
No 181
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.29 E-value=1.7 Score=48.73 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++.+.|++.|. ++||++.++..+|.++|++|....-+ .++ ..=.|.+... .+ ....+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe-~sIsf~V~~~--d~--~~av~~L~~~f~~el~~ 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSE-YSISFCVPQS--DA--AKAKRALEEEFALELKE 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCC-ceEEEEEeHH--HH--HHHHHHHHHHHHHHhcc
Confidence 56788999875 68999999999999999999744322 111 1212455421 00 01223333333222221
Q ss_pred -Cc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEe
Q 015208 319 -PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI 369 (411)
Q Consensus 319 -~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~ 369 (411)
.+ .+++. .. ...+.+.|. ++||+...+-.+|++.|+||....-
T Consensus 385 ~~~~~i~~~-~~-------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 385 GLLEPLEVE-EN-------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred CCcceEEEe-CC-------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 11 12221 11 126778886 7899999999999999999987663
No 182
>PRK09181 aspartate kinase; Validated
Probab=92.28 E-value=2.9 Score=43.71 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++.+.|+|.+. +.+|++.++..+|.++|++|. .+++ -...+ .|.+..+ ...++++.+.|...+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s~~si--s~~v~~~------~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--NANTI--THYLWGS------LKTLKRVIAELEKRYPN 394 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--cCcEE--EEEEcCC------hHHHHHHHHHHHHhcCC
Confidence 36778888765 789999999999999999998 4442 22222 2555421 12334444444433321
Q ss_pred CceEEEeccCCCccccccceEEEEeCC--CCchHHHHHHHHHhCCeeEEEEEec
Q 015208 319 PLRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 319 ~~~~~i~~~~~~~~~~~~~~~~v~~~D--RpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
..+.. .+. ..+.++|.. +||+...+-.+|++.||||.....+
T Consensus 395 -~~i~~--~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 395 -AEVTV--RKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred -ceEEE--CCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 12221 111 267788764 8999999999999999999877765
No 183
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.10 E-value=0.82 Score=49.59 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=51.8
Q ss_pred EEEEecC-CCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHH
Q 015208 233 SVTIDNS-LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR 311 (411)
Q Consensus 233 ~V~i~~~-~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~ 311 (411)
.|.++.+ ......-|.|.+.||+|||.+|+++|++.++||...... +..+.+..+.+ +. .+.+..++..|...
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~-~i---~v~n~~~L~~i~~~ 688 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQF-TI---EVKNLNHLGRVLAR 688 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEE-EE---EECcHHHHHHHHHH
Confidence 3445544 345668899999999999999999999999999977765 33455554333 21 14455677777666
Q ss_pred H
Q 015208 312 L 312 (411)
Q Consensus 312 L 312 (411)
|
T Consensus 689 l 689 (701)
T COG0317 689 L 689 (701)
T ss_pred H
Confidence 5
No 184
>PRK09084 aspartate kinase III; Validated
Probab=92.07 E-value=3.6 Score=42.75 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=64.9
Q ss_pred CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
.++..+|+|.+. +.+|++.++..+|.++|++|.. |++ ....+ .|.+..+. .. ......+.+.+...+.
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~s--se~sI--s~~i~~~~--~~-~~~~~~~~~~l~~el~ 373 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITT--SEVSV--SLTLDTTG--ST-STGDTLLTQALLTELS 373 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eec--cCcEE--EEEEechh--hh-hhhhHHHHHHHHHHHh
Confidence 346678899865 6899999999999999999984 332 12222 35554221 11 0111223233333343
Q ss_pred CCceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeE
Q 015208 318 QPLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 364 (411)
Q Consensus 318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I 364 (411)
....+.+. .+ -..+.+.|. ++||+...+-.+|++.++.+
T Consensus 374 ~~~~i~~~-~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 374 QLCRVEVE-EG-------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred cCCeEEEE-CC-------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 32223221 11 126888887 79999999999998865544
No 185
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.06 E-value=1.2 Score=33.16 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.4
Q ss_pred EEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 113 KLSCYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 113 ~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.|.-+||||-|.+++..++. |.||...+-
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~ 30 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHY 30 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence 56779999999999999999 999976544
No 186
>PRK11898 prephenate dehydratase; Provisional
Probab=92.04 E-value=0.38 Score=46.85 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=44.3
Q ss_pred EEEEe-CCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208 339 VELSG-KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK 405 (411)
Q Consensus 339 ~~v~~-~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~ 405 (411)
+-+.- .++||-|+++-..|+++|||+.++++. ...++.|+ |.|||.- .|..-+++ +.++.+++
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~~INLt~IeSR--P~~~~~~~-y~F~vd~-eg~~~~~~~~~al~~L~~ 264 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESR--PTKTGLGT-YFFFIDV-EGHIDDVLVAEALKELEA 264 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHCCCCeeeEecc--cCCCCCcc-EEEEEEE-EccCCCHHHHHHHHHHHH
Confidence 33443 357999999999999999999999998 54455564 5699985 56544333 24555544
No 187
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.81 E-value=0.79 Score=34.10 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred CceEEEEEEec----CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 107 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 107 ~~~t~i~v~~~----Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
.+...|+|.++ |.||+++++++.|++.|+||.... | .. -|.|.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S-~~---~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S-EI---SISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E-SS---EEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E-ee---eEEEEEeH
Confidence 45678889888 799999999999999999997555 5 32 25666643
No 188
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.74 E-value=1.3 Score=33.71 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.5
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~ 157 (411)
+.+..+|+||-|+++...|+.+|+|+..-.-....+....=.|||.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd 48 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD 48 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE
Confidence 4455689999999999999999999965444332333334457674
No 189
>PRK06291 aspartate kinase; Provisional
Probab=91.71 E-value=7.9 Score=40.39 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=70.8
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
+...|++.+. +.+|+++++.+.|.++|+||.--...+... --.|.|... +.+...+.|.+.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~---d~~~av~~L~~~~~~~~~----- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEA---DLEKALKALRREFGEGLV----- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHH---HHHHHHHHHHHHHHHhcC-----
Confidence 4567788765 689999999999999999998644333332 134555531 122222334443321100
Q ss_pred eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
. .-....+...|.|++. +++|+.+++..+|++.|+||......+
T Consensus 390 -~----~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 390 -R----DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred -c----ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 0 0112345678888885 689999999999999999997444333
No 190
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.58 E-value=5.5 Score=41.18 Aligned_cols=109 Identities=23% Similarity=0.192 Sum_probs=65.8
Q ss_pred CCceEEEEEeCCc--hhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc-C
Q 015208 242 PGHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-Q 318 (411)
Q Consensus 242 ~~~tvi~v~~~DR--pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~-~ 318 (411)
++...|++.+.+- +|++.++..+|.++|++|....-. +-...+ .|.++. +..++..+.|..... .
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~--~se~sI--s~~I~~--------~~~~~a~~~L~~~~~~~ 367 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS--SSETSI--SFTVDK--------EDADQAKTLLKSELNLS 367 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec--CCCceE--EEEEEH--------HHHHHHHHHHHHHHHhc
Confidence 3567788876443 799999999999999999844311 111111 244442 122222233322111 1
Q ss_pred Cc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 319 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 319 ~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.. .+.+. +. -..+.+.|. ++||++.++...|++.|+||.....+
T Consensus 368 ~~~~I~~~-~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~s 415 (441)
T TIGR00657 368 ALSSVEVE-KG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISSS 415 (441)
T ss_pred CcceEEEc-CC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEec
Confidence 11 12111 11 126777765 78999999999999999999888743
No 191
>PRK06382 threonine dehydratase; Provisional
Probab=91.55 E-value=1.3 Score=45.27 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE----eCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~----T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
.....+.+.|.-+|+||-|.+++..|.++|+||.+.... ....+...-+|.|... +++..+.|.+.|++
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999876654 2234556666766443 23334455555444
No 192
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.34 E-value=0.66 Score=41.03 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=37.9
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCC
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG 296 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g 296 (411)
-+.+.+.++||.|.+++-.++++|.||.++.-.....|+.+. .|...+|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~--iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL--IYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE--EEEEeeC
Confidence 467889999999999999999999999999876433454444 4665443
No 193
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.21 E-value=1.2 Score=43.15 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=41.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCc
Q 015208 243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK 298 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~ 298 (411)
..|.|-+..+|+||-|+++...|+.+|+|.. +|.+-..+ .-..=+||++.+|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence 4677778888999999999999999999998 55532333 334446788877765
No 194
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=91.02 E-value=0.36 Score=51.13 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=46.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
+-+.-.||||++..|+.+|.+++|||..+.+.|...|+.+ . ++... ..++..+ +++.+++
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~a--l---~~i~~-D~~v~~~-~l~~i~~ 513 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEA--L---MLLSL-DQPVPDE-VLEEIKA 513 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeE--E---EEEEc-CCCCCHH-HHHHHhc
Confidence 3355579999999999999999999999999976777777 3 33333 3356666 7777775
No 195
>PRK09034 aspartate kinase; Reviewed
Probab=91.00 E-value=9.8 Score=39.60 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=67.6
Q ss_pred cEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccH--HHHHHHHHhhCCCCCCccee
Q 015208 20 PCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRW--GLLKKRLMGACPSCSSASVV 94 (411)
Q Consensus 20 ~~~V~v~~---~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~--~~l~~~L~~~l~~~~~~~~~ 94 (411)
.+.|++.+ ++++|+++++...|+++|.||.-- ++.. .--.|.|...+-.+. ..+.+.|+..+.. .
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~--~sis~~v~~~~~~~a~~~~l~~el~~~~~~-~----- 377 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGI--DDLSIIIRERQLTPKKEDEILAEIKQELNP-D----- 377 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCC--cEEEEEEeHHHhhHHHHHHHHHHHHHhhCC-c-----
Confidence 45666664 678999999999999999998863 2222 224566664321111 2233333322210 0
Q ss_pred eeecccccCCCCCceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 95 LYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 95 ~~~~~~~~~~~~~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.-....+...|.+++ .+.||+++++..+|+++|+||.....
T Consensus 378 -------~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 378 -------ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred -------eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 012234677888876 47899999999999999999975543
No 196
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.58 E-value=0.54 Score=49.85 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=45.5
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
+-+.-.|+||++..|+.+|.+++|||..+.+.|...|+.+ . .+... ..+++.+ +++.+++
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~a--l---~~i~~-D~~v~~~-~l~~i~~ 514 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEA--L---MVLSV-DDPVPEE-VLEELRA 514 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeE--E---EEEEC-CCCCCHH-HHHHHhc
Confidence 3345579999999999999999999999999875666777 3 33322 3466677 7887775
No 197
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.95 E-value=1.3 Score=33.89 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=34.1
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
+.+..+|+||-|+++...|+.+|+|+..-.-....+....-.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 44556899999999999999999999655544333444445677743
No 198
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.64 E-value=0.71 Score=46.67 Aligned_cols=51 Identities=8% Similarity=-0.020 Sum_probs=39.5
Q ss_pred ccceEEEEeC-CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCC
Q 015208 335 VANPVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 390 (411)
Q Consensus 335 ~~~~~~v~~~-DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~ 390 (411)
..+.+-+.=. |+||.|++|+.+|+++||||.++++. ..+.|+.. ||+.-..
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~y~-f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGELH-FRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCceEE-EEEEEec
Confidence 3445556565 99999999999999999999999984 23456566 8888643
No 199
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=89.38 E-value=0.85 Score=47.01 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=47.6
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
.+|-+.-.|+||-|+++-..|+++|||+.++++. ......|+.+.|||.- .|..-..+++++.+++
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESR--Psk~~~~e~Y~FfVD~-Eg~~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESR--DSKDGTSKTMDVLVDV-ELFHYGLQEAMDLLKS 97 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECC--cCCCCCCccEEEEEEE-EcCHHHHHHHHHHHHH
Confidence 3566666899999999999999999999999998 4444555547788885 4443222225666655
No 200
>PLN02551 aspartokinase
Probab=89.36 E-value=10 Score=40.15 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=69.4
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
+.+.|+|.+. +.+|+++++...|.++|++|.-- ++.. .--.|.+....-...+.+++.+.+.+.....
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~----- 435 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWSRELIQQELDHLVEELEK----- 435 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhc-----
Confidence 4567777655 68999999999999999999854 2222 2235666543311222233333222111000
Q ss_pred eecccccCCCCCceEEEEEEec--CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 96 YYRAEMQAPKPSDVFLLKLSCY--DRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 96 ~~~~~~~~~~~~~~t~i~v~~~--Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
+.. -....+...|.|++. ..+|+++++..+|+..|+||......+
T Consensus 436 ~~~----V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 436 IAV----VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred CCe----EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 000 112346778888864 678999999999999999997554433
No 201
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.12 E-value=4.1 Score=31.83 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.3
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEE
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVK 141 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~ 141 (411)
++.+.-+|+||=|++++.+|+ +.||....
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~ 31 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFN 31 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEE
Confidence 467788999999999999999 56665433
No 202
>PRK09181 aspartate kinase; Validated
Probab=89.11 E-value=19 Score=37.77 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
+.+.|+|.+. +.+|+.+++.+.|.++|+||. -+.+.. .-..|.|... ....+.+.+.|++.+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-~~~~~~~~~~L~~~~~~~------- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-LKTLKRVIAELEKRYPNA------- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-hHHHHHHHHHHHHhcCCc-------
Confidence 4566777544 689999999999999999997 233322 2245666543 112344444455433210
Q ss_pred eecccccCCCCCceEEEEEEecC--cccHHHHHHHHHHhCCceEEEEEE
Q 015208 96 YYRAEMQAPKPSDVFLLKLSCYD--RKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 96 ~~~~~~~~~~~~~~t~i~v~~~D--r~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.+ .. .+...|.+++.. +||+.+++..+|++.|+||..-..
T Consensus 396 ----~i--~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 396 ----EV--TV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred ----eE--EE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 01 12 567888988855 899999999999999999975443
No 203
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=88.98 E-value=0.64 Score=43.78 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=38.6
Q ss_pred cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEE
Q 015208 336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD 387 (411)
Q Consensus 336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~ 387 (411)
...+.+--.|-||+++.|+-+|+..|+||.++-+. ..-.++ ..+|-+.
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc--~tevk~--LsrmTIV 124 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC--LTEVKA--LSRMTIV 124 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeee--chhhhh--hhhceEE
Confidence 34788888999999999999999999999999998 444555 4444444
No 204
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.65 E-value=2.2 Score=46.37 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=38.1
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV 150 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~ 150 (411)
...-.+.|.|.+.||+|+|++|+.+|+..+.||.+....+. ++.+
T Consensus 623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~ 667 (701)
T COG0317 623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQF 667 (701)
T ss_pred CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCce
Confidence 34567899999999999999999999999999999888774 3443
No 205
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.44 E-value=1.7 Score=38.47 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
-.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+......-+-.|... ++..++++.+.|.+..+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence 45777889999999999999999999999988875454432222222222 23456778777777664
No 206
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=87.97 E-value=30 Score=38.87 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=70.3
Q ss_pred CceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208 107 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA 183 (411)
Q Consensus 107 ~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~ 183 (411)
.+.+.|+|.+. ++||+++++...|+++|++|......+ ++. --.|.|.. +..++....|.+.+..+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~-sIsf~V~~--------~d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEY-SISFCVPQ--------SDAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCc-eEEEEEeH--------HHHHHHHHHHHHHHHHH
Confidence 45678888864 678999999999999999997554433 221 12455532 22233333344433210
Q ss_pred ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHH
Q 015208 184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD 260 (411)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~ 260 (411)
. .. + ....|++. ++..+|++.|. ++||++..
T Consensus 382 l----------------------~~---~-----------------~~~~i~~~----~~valIsvvG~gm~~~~gv~ar 415 (819)
T PRK09436 382 L----------------------KE---G-----------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAAK 415 (819)
T ss_pred h----------------------cc---C-----------------CcceEEEe----CCEEEEEEEccCcccCcCHHHH
Confidence 0 00 0 01124432 35678888886 78999999
Q ss_pred HHHHHHhCCeEEE
Q 015208 261 IMRTLKDYNIQVS 273 (411)
Q Consensus 261 i~~~l~~~g~~i~ 273 (411)
+..+|.+.|+||.
T Consensus 416 if~aL~~~~InI~ 428 (819)
T PRK09436 416 FFSALGRANINIV 428 (819)
T ss_pred HHHHHHHCCCCEE
Confidence 9999999999998
No 207
>PRK06382 threonine dehydratase; Provisional
Probab=87.95 E-value=2.5 Score=43.21 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE----E--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS----T--DGKWCYIVFWVIGDSQTRWGLLKKRLMG 83 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~----t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~ 83 (411)
..+.+.|.-+|+||.|++++.+|.++|.||.+-... . .+. ..-+|.|....-...+.+.+.|++
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~-~~v~i~vet~~~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGF-QSVTFTVNVRGQDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCc-EEEEEEEEeCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999977664 2 344 456677764321233356566655
No 208
>PRK12483 threonine dehydratase; Reviewed
Probab=87.93 E-value=27 Score=37.08 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=80.2
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCC-ccH-HHHHHHHHhhCCCCCCc----
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQ-TRW-GLLKKRLMGACPSCSSA---- 91 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g-~~~-~~l~~~L~~~l~~~~~~---- 91 (411)
....+.|.-+||||-|.+++.+|... ||.+-.-.. ..... .++....-.+ ... +.+.+.|++.--...+.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne 420 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE 420 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence 34678899999999999999999988 888765543 22212 3333332222 233 45656665431110000
Q ss_pred ceeeeeccccc--CCCCCceEEEEEEecCcccHHHHHHHHHHh-CCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhH
Q 015208 92 SVVLYYRAEMQ--APKPSDVFLLKLSCYDRKGLLYDVTAVLCE-LELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKR 168 (411)
Q Consensus 92 ~~~~~~~~~~~--~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~-~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~ 168 (411)
..+.+.+.-+. ......--.+.+.=|.|||=|.+++..|.. .++.-.+=+......++++--|.+ + +++
T Consensus 421 ~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~--~------~~~ 492 (521)
T PRK12483 421 LAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQV--P------EDE 492 (521)
T ss_pred HHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEee--C------hhH
Confidence 00111111111 112334456777789999999999999996 355554444332223344433444 1 133
Q ss_pred HHHHHHHHHH
Q 015208 169 KEDTYEHLKT 178 (411)
Q Consensus 169 ~~~l~~~L~~ 178 (411)
.+.+.+.|.+
T Consensus 493 ~~~~~~~l~~ 502 (521)
T PRK12483 493 RAALDAALAA 502 (521)
T ss_pred HHHHHHHHHH
Confidence 4556555544
No 209
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=87.64 E-value=1.7 Score=44.64 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=46.8
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCC-CChhhHHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS-VPRNKIEEGVWKL 406 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~-~~~~~~~~~~~~~ 406 (411)
++-+.-.|+||-|.++-.+|+++|||+.++++. ......| -+.|||.- .|.. ...+++++.+++.
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESR--Psk~~~~-eY~FFVD~-eg~~~~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESR--PSKTHPG-EYEFFVEF-DEASDRKLEGVIEHLRQK 83 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecc--cCCCCCc-cEEEEEEE-ecCccHHHHHHHHHHHHh
Confidence 555666899999999999999999999999998 4444445 45689885 4543 1122366766654
No 210
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=87.54 E-value=17 Score=32.30 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=47.9
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
-++.+.-.|.||.|..++..|+..|+||.+-.+.- |.-....-+-++. .| |+...+++.+.|...+..
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv-~g----~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVV-SG----DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEE-cC----CcchHHHHHHHHHhhccc
Confidence 46778889999999999999999999999877763 3333333222332 22 245788898888766654
No 211
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.26 E-value=4.6 Score=31.57 Aligned_cols=61 Identities=7% Similarity=0.046 Sum_probs=37.7
Q ss_pred EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCC-HHHHHHHHHHHHH
Q 015208 246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD-PSKQNGLSSRLWM 314 (411)
Q Consensus 246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~-~~~~~~l~~~L~~ 314 (411)
++.+.=+||||=|..++.+|. +.||.+..-... ..+...-.+.+. +.+ ++..+++.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~~~~v~i~ie-----~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEKDAHIFVGVS-----VANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCCeeEEEEEEE-----eCCcHHHHHHHHHHHHH
Confidence 678888999999999999999 455553333311 112222122333 334 5677888887744
No 212
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.23 E-value=39 Score=34.88 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.9
Q ss_pred CceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208 243 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 243 ~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
+.++|++.|. ++||+++++..+|++.|+||..-
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i 412 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence 5677888664 78999999999999999999733
No 213
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.96 E-value=1.1 Score=42.14 Aligned_cols=66 Identities=14% Similarity=0.254 Sum_probs=44.8
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEE--EEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD--LFFVTDTRELLHTRKRKEDTYEHLKTIL 180 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d--~F~V~~~~~~~~~~~~~~~l~~~L~~~L 180 (411)
..-+|.+...|-||.+++|+++|+..|+||.+.-+.-+. .+++- +..+.-. +.-+++.++.|++..
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~te-vk~LsrmTIVl~Gt------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTE-VKALSRMTIVLQGT------DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechh-hhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence 456788889999999999999999999999998886423 33333 3333322 223455555555544
No 214
>PLN02317 arogenate dehydratase
Probab=86.24 E-value=2.8 Score=42.40 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=41.9
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCc-------------ceeeEEEEEEEcCCCCCCChh
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD-------------REWEVYRVLLDEGDGLSVPRN 397 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~-------------~~~~~~~f~v~~~~g~~~~~~ 397 (411)
.++-+.-.|+||.|+++-.+|+.+|||+.++++. |..+. +.|+ |.|||.- .|..-+.+
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESR-P~~~~~~~~~~~~~~~~~~~~e-Y~FyVD~-eg~~~d~~ 354 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESR-PQRKRPLRVVDDSNSGTAKYFD-YLFYVDF-EASMADPR 354 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEee-ecCCCCcccccccccccccccc-EEEEEEE-EcCcCCHH
Confidence 3455556789999999999999999999999986 33332 1454 6699885 45444433
No 215
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.59 E-value=8.7 Score=29.33 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 252 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 252 ~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
.+.||+++++..+|+++|+++. .|+ +....+ .|.+.....++.+ +.+++|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vD--mI~--~s~~~i--sftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVD--LVS--TSETNV--TVSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEE--EEE--eCCCEE--EEEEeCcccccch-HHHHHHHHHHHh
Confidence 5889999999999999999999 454 222222 2455433222443 356677777644
No 216
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.43 E-value=3.2 Score=34.75 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=34.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~ 157 (411)
.+.+.+..+|+||-|+++...|+.+|+|+.+-.-....+....-.|||.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId 89 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR 89 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence 4666677799999999999999999999965444332223223356663
No 217
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.24 E-value=7.4 Score=39.31 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE---eC-CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 106 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS---TT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 106 ~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~---T~-~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
......+.|.-+|+||.|++++..++++|.||.+..-. .. ..+.+.-.+.|... +++..+.|.+.|++
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999876433 11 23455444555332 23444555555443
No 218
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=85.12 E-value=17 Score=40.63 Aligned_cols=108 Identities=15% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
++.+.|++.+. +.||.+.++..+|.++|+++..-..+ ..+ ..=.|.++. +..+.+.+.|... ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~---~s~-~sis~~i~~--------~~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH---PDR-QLLQLAYTS--------EVADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec---CCC-cEEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence 45678888876 88999999999999999999844322 122 121233331 1233444444322 12
Q ss_pred CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 319 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 319 ~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
...+.+. ++ ...+.++|. .+||+...+-.+|++.++++.....+
T Consensus 382 ~~~i~v~-~~-------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s 428 (810)
T PRK09466 382 PGELKLR-EG-------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSED 428 (810)
T ss_pred CCcEEEe-CC-------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCC
Confidence 2222221 11 226888886 68999999999999999999766544
No 219
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=84.74 E-value=1.6 Score=38.40 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=29.2
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDV 53 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i 53 (411)
+..+|..-.++.||+++.+++.++++||+|..+-.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 44566666788999999999999999999997544
No 220
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=84.70 E-value=2.6 Score=42.57 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=31.5
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 371 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~ 371 (411)
.+.|.-.||||.|.+++..++++|.||.+..-.|
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r 340 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAEARANIVKIDHDR 340 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeec
Confidence 7888999999999999999999999999997664
No 221
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=84.52 E-value=10 Score=27.78 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.5
Q ss_pred ecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 116 CYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 116 ~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.+|.+|.++++...|++.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 378999999999999999999975543
No 222
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.48 E-value=2.6 Score=44.68 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=39.5
Q ss_pred CCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208 106 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 156 (411)
Q Consensus 106 ~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V 156 (411)
.+....+-+.-.|+||.+..++..|.++++||...++.-. .++.++-++.+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3345556667799999999999999999999988887632 35677766665
No 223
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=84.28 E-value=56 Score=34.00 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=68.4
Q ss_pred CCcEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCccee
Q 015208 18 GDPCVITVNCPD---KTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV 94 (411)
Q Consensus 18 ~~~~~V~v~~~D---r~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~ 94 (411)
.+...|+|.++. ++|..+++.+.|.++|+|+.---...+..+ ..|.|.... .....+.|++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~---~~~a~~~l~~~~~~~~~---- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESD---APRALRALLEEKLELLA---- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhh---HHHHHHHHHHHHhhhcc----
Confidence 356667666543 459999999999999999974333322321 566666422 22333334443321110
Q ss_pred eeecccccCCCCCceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 015208 95 LYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVK 141 (411)
Q Consensus 95 ~~~~~~~~~~~~~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~ 141 (411)
.-....+.-.|.+++ ...||..+++..+|++.|+||....
T Consensus 376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 012234567788887 4578999999999999999997554
No 224
>PRK08198 threonine dehydratase; Provisional
Probab=84.27 E-value=8.7 Score=39.18 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 143 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~ 143 (411)
.......+.|.-+|+||-|+++...++++|.||.+....
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 345667999999999999999999999999999877654
No 225
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.03 E-value=3 Score=41.93 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 015208 17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST 55 (411)
Q Consensus 17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t 55 (411)
-.....|.|.-+|+||-++++++.|...|+||.+-+|..
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 346789999999999999999999999999999999954
No 226
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.90 E-value=5.3 Score=27.88 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=29.3
Q ss_pred ecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208 116 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 156 (411)
Q Consensus 116 ~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V 156 (411)
.+|.+|.++++.+.|+++|++|.........+|...-.|.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v 48 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV 48 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence 48889999999999999999997655432123333335655
No 227
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.61 E-value=3.4 Score=41.53 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
+.++.+.|.-+||||-+..++..|.+.|+||.+-+|.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 4678889999999999999999999999999999986
No 228
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.24 E-value=5.7 Score=40.46 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=38.0
Q ss_pred ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
..|.+-+..+|+||.|+++...|+.+|+|+..-.-.-..++...=.|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 356666777899999999999999999999655544334444555687743
No 229
>PRK06349 homoserine dehydrogenase; Provisional
Probab=82.53 E-value=6.1 Score=40.72 Aligned_cols=52 Identities=23% Similarity=0.430 Sum_probs=39.7
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcC
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 159 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~ 159 (411)
...+-|.+...|+||.|++|++.|.++++||.+...... ++....++++++.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~ 397 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE 397 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe
Confidence 456788899999999999999999999999987765442 2334456666654
No 230
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=82.18 E-value=17 Score=41.08 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208 241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 317 (411)
Q Consensus 241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 317 (411)
.++.++|++.+. +.+|++.++...|+++|++|. -|+ +....+ .|.+........ .+.++.+...|.
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd--~I~--sse~si--s~~i~~~~~~~~-~~~~~~l~~~l~---- 387 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVD--LIS--SSETNV--TVSLDPSENLVN-TDVLAALSADLS---- 387 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEE--EEE--cCCCEE--EEEEccccccch-HHHHHHHHHHHh----
Confidence 345678888654 689999999999999999998 444 222222 244442211111 123344444432
Q ss_pred CCceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEE
Q 015208 318 QPLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSA 367 (411)
Q Consensus 318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~ 367 (411)
..-.+.+. .. -..|.++|. .+||+...+-.+|++.+|++..-
T Consensus 388 ~~~~i~~~-~~-------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~ 432 (861)
T PRK08961 388 QICRVKII-VP-------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQ 432 (861)
T ss_pred hcCcEEEe-CC-------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEEC
Confidence 21123221 11 127889996 89999999999999988766433
No 231
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=82.16 E-value=16 Score=26.27 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=25.4
Q ss_pred eEEEEEe---CCchhHHHHHHHHHHhCCeEEEE
Q 015208 245 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 274 (411)
Q Consensus 245 tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~ 274 (411)
.+|++.| .+.||+++++.++|.+.|+++..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~ 34 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRA 34 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 3566666 48899999999999999999973
No 232
>PLN02550 threonine dehydratase
Probab=81.99 E-value=61 Score=34.96 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=77.2
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcc-----
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSAS----- 92 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~----- 92 (411)
...+.|.-+||||-|.+++.+|... ||.+-.-.. +.... -++....-.+ ...+.+.+.|++.--...+..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~~~~~~i~~~l~~~g~~~~~l~~~~~~ 493 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVHTEQELQALKKRMESAQLRTVNLTSNDLV 493 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeCCHHHHHHHHHHHHHCCCCeEeCCCChHH
Confidence 3678899999999999999999986 888766543 21212 2222222222 234455555555321111110
Q ss_pred ---eeeeecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhC-CceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhH
Q 015208 93 ---VVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCEL-ELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKR 168 (411)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~-glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~ 168 (411)
.+++. .. ......--.+.+.=|.|||-|.+++.+|... ++.-.+=+.....+++++--|.+. +++
T Consensus 494 ~~~LR~v~-g~--ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--------~~e 562 (591)
T PLN02550 494 KDHLRYLM-GG--RAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--------PEE 562 (591)
T ss_pred hhhhhhee-cc--ccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--------HHH
Confidence 01111 00 0011334567777899999999999988852 444443332221233444444441 234
Q ss_pred HHHHHHHHHH
Q 015208 169 KEDTYEHLKT 178 (411)
Q Consensus 169 ~~~l~~~L~~ 178 (411)
.+.+.+.|.+
T Consensus 563 ~~~l~~~l~~ 572 (591)
T PLN02550 563 MQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHH
Confidence 4556555544
No 233
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.96 E-value=13 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=25.4
Q ss_pred EEEEEE---ecCcccHHHHHHHHHHhCCceEEEE
Q 015208 110 FLLKLS---CYDRKGLLYDVTAVLCELELTIEKV 140 (411)
Q Consensus 110 t~i~v~---~~Dr~GLl~~i~~~L~~~glnI~~A 140 (411)
+.|+|. .++.||++++|...|+++|+||..-
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 356662 4788999999999999999999643
No 234
>PRK08841 aspartate kinase; Validated
Probab=80.22 E-value=17 Score=37.18 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 321 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 321 (411)
++.+.|++.+ +.+..+...|.++|+++.. ++ +....+ .|++. ....++++. .+...
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~--~~~~~~--~~~v~--------~~~~~~~~~----~~~~~-- 311 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWN--VI--EEADRA--QIVIK--------QDACAKLKL----VFDDK-- 311 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEE--EE--ecCCcE--EEEEC--------HHHHHHHHH----hCccc--
Confidence 4566777755 3578999999999999883 33 222222 24543 122333322 12111
Q ss_pred EEEeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 322 VTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 322 ~~i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+. .. -..+.+.|...||+...+..+|++.|+||.....+
T Consensus 312 i~~~-~~-------~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s 352 (392)
T PRK08841 312 IRNS-ES-------VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE 352 (392)
T ss_pred EEEe-CC-------EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC
Confidence 2111 11 12688999999999999999999999999666544
No 235
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.14 E-value=17 Score=27.76 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=36.1
Q ss_pred cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 117 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 117 ~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
++.+|+++++.++|+++|+||... .+ .. .--.|.|..... ..+.+.++.|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~--~~isftv~~~~~-~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SE--TNVTVSLDPDPN-GLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-CC--CEEEEEEeCccc-ccchHHHHHHHHHHHh
Confidence 678999999999999999999654 33 22 223455544331 1233456667666665
No 236
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=80.13 E-value=3.7 Score=43.52 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=39.0
Q ss_pred CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208 107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 156 (411)
Q Consensus 107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V 156 (411)
.+...+-+.-.|+||.+..++..|.++++||..+++.-. .++.++-++.+
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~ 499 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL 499 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence 344455566799999999999999999999988887632 35777766666
No 237
>PRK06349 homoserine dehydrogenase; Provisional
Probab=79.79 E-value=3.8 Score=42.24 Aligned_cols=37 Identities=19% Similarity=0.020 Sum_probs=33.1
Q ss_pred cccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 334 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 334 ~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
...|.+.+...|+||++.+|+.+|+++|+||.++...
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~ 382 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQK 382 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec
Confidence 3457889999999999999999999999999998765
No 238
>PRK08198 threonine dehydratase; Provisional
Probab=79.27 E-value=11 Score=38.51 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST 55 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t 55 (411)
...+.|.-+|+||.|++++..++++|.||.+-....
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 468999999999999999999999999999987753
No 239
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=78.81 E-value=17 Score=31.18 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=45.4
Q ss_pred cCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcC
Q 015208 102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 159 (411)
Q Consensus 102 ~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~ 159 (411)
.......-+.+.+.-.||.|.|+++..++++.++||+.-.-.--.+|++--+..+...
T Consensus 65 ~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 65 YDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred hhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch
Confidence 3345556788888999999999999999999999998777654457887666666443
No 240
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=78.20 E-value=21 Score=27.71 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=48.5
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~ 181 (411)
.+.+.+.+.++|+.|.++.++-...|+.|......+..+ |.+---|.| +.+.+ .+.|...|+++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s~R~------~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DSDRS------VDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cCCCC------hHHHHHHHHHHcc
Confidence 578899999999999999999999999999888876443 444334444 33322 3567777777654
No 241
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=78.18 E-value=15 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHhCCeEEEE
Q 015208 252 QDHKGLLYDIMRTLKDYNIQVSY 274 (411)
Q Consensus 252 ~DRpGLL~~i~~~l~~~g~~i~~ 274 (411)
.+++|+..++.++|.+.|+++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~ 33 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL 33 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999993
No 242
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=77.70 E-value=6.8 Score=34.59 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=40.5
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 405 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~ 405 (411)
.+.....+.||++.+|+..++++|++|..+-++-|.--+.+ +.|+.. ..|+.-+ +++.+++
T Consensus 97 ei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~----~l~IVt--e~~iP~~-li~el~~ 157 (167)
T COG2150 97 EIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEP----KLTIVT--ERPIPGD-LIDELKK 157 (167)
T ss_pred EEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCc----eEEEEE--eccCCHH-HHHHHhc
Confidence 34455678899999999999999999999887632111222 234443 4566655 5665554
No 243
>PRK08818 prephenate dehydrogenase; Provisional
Probab=77.35 E-value=9.7 Score=38.55 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=38.5
Q ss_pred CcEEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCC
Q 015208 19 DPCVITVNCP-DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS 70 (411)
Q Consensus 19 ~~~~V~v~~~-Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~ 70 (411)
..+.+.+.-+ |+||.++++.++|..+|+||.+-.+.....|-.- |.+.-..
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEec
Confidence 4667777776 9999999999999999999999998543333322 6665443
No 244
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=76.73 E-value=24 Score=26.66 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=24.1
Q ss_pred eEEEEEe---CCchhHHHHHHHHHHhCCeEEE
Q 015208 245 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 245 tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~ 273 (411)
+.|++.| .+.||++.++..+|++.|+++.
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~ 33 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVD 33 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEE
Confidence 3455543 6789999999999999999997
No 245
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.92 E-value=28 Score=25.31 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.4
Q ss_pred eEEEEEeC---CchhHHHHHHHHHHhCCeEEE
Q 015208 245 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 245 tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~ 273 (411)
..|.+.|. +.||++.++..+|.+.|+++.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35677775 899999999999999999996
No 246
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=75.42 E-value=23 Score=27.58 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC 85 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l 85 (411)
...+.+..+++|+.+.++-++.-..|+.|....+++ |++.+-.-|.|..+. ..+.+...|+++.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R--~~~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR--SVDLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC--ChHHHHHHHHHHc
Confidence 467889999999999999999999999999988876 666455556666433 3566767777764
No 247
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.01 E-value=28 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.8
Q ss_pred eEEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208 245 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 245 tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
.+|.+.|. ++||++.++.++|.+.|+++..-
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i 35 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMI 35 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEE
Confidence 35666665 78999999999999999999733
No 248
>PRK09084 aspartate kinase III; Validated
Probab=74.62 E-value=40 Score=35.04 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=62.3
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc--cHHHHHHHHHhhCCCCCCcce
Q 015208 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT--RWGLLKKRLMGACPSCSSASV 93 (411)
Q Consensus 19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~--~~~~l~~~L~~~l~~~~~~~~ 93 (411)
+...|+|.+. +.+|+++++...|.++|+||.--. +.. .--.|.|....-. ....+.+.+.+.+.....
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~--- 377 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR--- 377 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---
Confidence 4567788654 689999999999999999998543 222 2245666643211 111122223222221010
Q ss_pred eeeecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCc
Q 015208 94 VLYYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELEL 135 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~gl 135 (411)
-....+...|.+++. ++||+++++..+|+..++
T Consensus 378 ---------i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 378 ---------VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred ---------EEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 012346788899885 789999999999987543
No 249
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=74.52 E-value=12 Score=38.74 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceE-E-EEEEEecCCCc
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE-I-DLFIMQADGKK 298 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~-~-d~F~v~~~g~~ 298 (411)
....+-|-+.-+|+||-|+++-..|+++|+|+. +|.+-...... . =.|||+.+|..
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEECCcCCCCCCccEEEEEEEEcCH
Confidence 334455666668999999999999999999998 55532222222 2 25888866554
No 250
>PRK05925 aspartate kinase; Provisional
Probab=74.18 E-value=69 Score=33.25 Aligned_cols=108 Identities=15% Similarity=0.048 Sum_probs=63.3
Q ss_pred CCceEEEEEeC-CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208 242 PGHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 320 (411)
Q Consensus 242 ~~~tvi~v~~~-DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 320 (411)
++.+++++.+. ..+|.+.++...|.++|++|... .+ .+... .|.+..+. .. ...++ .|...+.+--
T Consensus 298 ~~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s--~~~si--s~~i~~~~--~~-~~~~~----~l~~~l~~~~ 364 (440)
T PRK05925 298 QNQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MA--QNLGV--YFTIDDDD--IS-EEYPQ----HLTDALSAFG 364 (440)
T ss_pred CCEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--ec--cCCEE--EEEEechh--cc-HHHHH----HHHHHhcCCc
Confidence 34567777643 25788999999999999999733 21 22222 25554211 11 11222 2333333322
Q ss_pred eEEEeccCCCccccccceEEEEeC--CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 321 RVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 321 ~~~i~~~~~~~~~~~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+.+.. . -..+.++|. -+||+...+...|++.|+||.....+
T Consensus 365 ~i~~~~-~-------~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s 408 (440)
T PRK05925 365 TVSCEG-P-------LALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQS 408 (440)
T ss_pred eEEEEC-C-------EEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEECC
Confidence 232211 1 125777775 34889999999999999999765443
No 251
>PRK09224 threonine dehydratase; Reviewed
Probab=74.08 E-value=87 Score=33.09 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHH-HHHHHHHHHHHHcCCc
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK-QNGLSSRLWMELLQPL 320 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~-~~~l~~~L~~~l~~~~ 320 (411)
.....+.|.=+||||=|..+++.|. +.||..-.-. ..+.....+|+.-. +.++++ .++|.+.|.+ ...
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr--~~~~~~a~V~vgie----~~~~~~~~~~i~~~L~~---~gy 394 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR--YADAKEAHIFVGVQ----LSRGQEERAEIIAQLRA---HGY 394 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE--ecCCCeEEEEEEEE----eCChhhHHHHHHHHHHH---cCC
Confidence 4567889999999999999999999 5666644433 12333444554321 233344 7888887744 223
Q ss_pred eEEEecc-------------CCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 321 RVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 321 ~~~i~~~-------------~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+..++. |..+.......+.+.=++|||-|.+.-..|. -+-||...+-.
T Consensus 395 ~~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 395 PVVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 3332211 1111111123577888999999999988776 56677777764
No 252
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=72.64 E-value=24 Score=30.21 Aligned_cols=49 Identities=10% Similarity=0.202 Sum_probs=38.9
Q ss_pred CCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEE
Q 015208 18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVI 67 (411)
Q Consensus 18 ~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~ 67 (411)
+.-..+.+.-.||.|.|+++-.++++.+|||+.-..+- +|. +--++.+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~-Anvtlsi~ 120 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGR-ANVTLSID 120 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCce-eeEEEEEE
Confidence 34567888999999999999999999999999888754 776 53333333
No 253
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=72.22 E-value=4.3 Score=42.96 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=32.0
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.++|.+.||.||++||-..|..++||+..+|+.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 589999999999999999999999999999998
No 254
>PLN02317 arogenate dehydratase
Probab=72.22 E-value=23 Score=35.90 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=38.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCce---------------EEEEEEEecCCCc
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC---------------EIDLFIMQADGKK 298 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~---------------~~d~F~v~~~g~~ 298 (411)
.|.|-+.-+|+||-|+++..+|+..|+|+. +|.+-..... +.=.||++.+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLt--kIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLT--KIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEE--EEEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence 466666668999999999999999999998 5543222222 3336889876653
No 255
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=71.39 E-value=1.4e+02 Score=33.54 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=67.4
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
+...|+|.+. +.+|.++++...|.++|.||.--..+++.. ...|.+... ..+.+.+.|++.... .
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~~---~~~~~~~~l~~~~~~-~------ 383 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTSE---VADSALKLLDDAALP-G------ 383 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeHH---HHHHHHHHHHhhcCC-C------
Confidence 4567777765 778999999999999999987554434433 134444421 223333334432110 0
Q ss_pred eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 015208 96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEK 139 (411)
Q Consensus 96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~ 139 (411)
. -....+...|.+++. .++|+.+++..+|.+.|+++.+
T Consensus 384 ----~--i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 384 ----E--LKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred ----c--EEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 0 012346788999984 5889999999999999999953
No 256
>PRK12483 threonine dehydratase; Reviewed
Probab=71.32 E-value=83 Score=33.44 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=74.2
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHH-HHHHHHHHHHHcCC
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ-NGLSSRLWMELLQP 319 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~-~~l~~~L~~~l~~~ 319 (411)
+.....+.|.-+||||-|.+++..|... ||.+-.-.. .+.+-..+++.-. +.++++. ++|.++|.+ ..
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~--~~~~~~~v~v~ie----~~~~~~~~~~i~~~l~~---~g 410 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY--ADAREAHLFVGVQ----THPRHDPRAQLLASLRA---QG 410 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe--cCCCeeEEEEEEE----eCChhhhHHHHHHHHHH---CC
Confidence 4456788999999999999999999988 666443331 2222233443321 2334565 778777643 23
Q ss_pred ceEEEecc-------------CCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEE
Q 015208 320 LRVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVL 385 (411)
Q Consensus 320 ~~~~i~~~-------------~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~ 385 (411)
..+...+. |..+.......+.+.=++|||-+....+.|... -||...+=. -.|... .+.|.
T Consensus 411 ~~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR--~~~~~~--a~v~v 484 (521)
T PRK12483 411 FPVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYR--NHGAAD--GRVLA 484 (521)
T ss_pred CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeec--CCCCCc--eEEEE
Confidence 33322211 111001112356778899999999999998752 344444443 333333 45444
No 257
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.44 E-value=35 Score=25.99 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred eCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 251 CQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 251 ~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
.+++||++++|..+|+++|++|. -|+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VD--mI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVD--LIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEE--EEe
Confidence 47889999999999999999999 554
No 258
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.38 E-value=36 Score=24.26 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=26.8
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 110 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 110 t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
..|.+.+ ++.+|+++++.+.|++.|++|.....
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566666 57899999999999999999975543
No 259
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=70.00 E-value=31 Score=24.60 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=35.3
Q ss_pred CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHh
Q 015208 345 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 407 (411)
Q Consensus 345 DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~ 407 (411)
++||...+|-..|++.|+|+....++ . . -..|++..... .+ .++.+.++|
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t~--~-~-----~is~~v~~~~~----~~-~~~~l~~~l 61 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPTS--E-N-----SVTLYLDDSLL----PK-KLKRLLAEL 61 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEecC--C-C-----EEEEEEehhhh----hH-HHHHHHHhh
Confidence 77999999999999999999999765 2 1 23477775322 22 355665554
No 260
>PRK09224 threonine dehydratase; Reviewed
Probab=69.19 E-value=83 Score=33.23 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=70.1
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCC-cc-HHHHHHHHHhhCCCCCCc----ce
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQ-TR-WGLLKKRLMGACPSCSSA----SV 93 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g-~~-~~~l~~~L~~~l~~~~~~----~~ 93 (411)
...+.|.-|||||-|.+++..|. +.||..-+-...+..-..+|....-.+ .. .+.+.+.|++.--...+. ..
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~gy~~~~ls~ne~~ 405 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHGYPVVDLSDDELA 405 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcCCCeEECCCCHHH
Confidence 46788899999999999999998 688887555332221224443333222 22 456666666532110000 00
Q ss_pred eeeeccccc--CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 94 VLYYRAEMQ--APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 94 ~~~~~~~~~--~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
+.+.+.-+. .+...+--.+.+.=|.|||-|.+.+..|. -+.||..-+=
T Consensus 406 k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Y 455 (504)
T PRK09224 406 KLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHY 455 (504)
T ss_pred HHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEE
Confidence 111111111 11122445677778999999999999777 7788866554
No 261
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=68.20 E-value=51 Score=37.27 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=62.8
Q ss_pred CcEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208 19 DPCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL 95 (411)
Q Consensus 19 ~~~~V~v~~---~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~ 95 (411)
+...|++.+ .+.+|+++++...|.++|.||.-- ++... --.|.+.+.....++...+.+.+.+......
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~--sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---- 392 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSET--NVTVSLDPSENLVNTDVLAALSADLSQICRV---- 392 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCC--EEEEEEccccccchHHHHHHHHHHHhhcCcE----
Confidence 456677753 468999999999999999999643 33222 1345555433211222222222222110100
Q ss_pred eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceE
Q 015208 96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTI 137 (411)
Q Consensus 96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI 137 (411)
....+...|.|++. .++|+.+++..+|++.|+++
T Consensus 393 --------~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 --------KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred --------EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 11235688999985 78999999999999987665
No 262
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.25 E-value=43 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.1
Q ss_pred EEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208 246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
+|++.|. +++|++.++.+.|++.|+++.--
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i 35 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMI 35 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 5666664 78999999999999999999743
No 263
>PLN02550 threonine dehydratase
Probab=65.34 E-value=1.2e+02 Score=32.81 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=70.1
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 321 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 321 (411)
.....+.+.-+||||-|.+++.+|... ||.+-.-... ..+.+. +++. .+ +.++++.++|.++|.+ ..+.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~-v~v~-ie---~~~~~~~~~i~~~l~~---~g~~ 483 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYS-SEKEAL-VLYS-VG---VHTEQELQALKKRMES---AQLR 483 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEec-CCCceE-EEEE-EE---eCCHHHHHHHHHHHHH---CCCC
Confidence 445778899999999999999999987 6654433311 112222 3322 11 3356788888888754 2222
Q ss_pred EEEeccCCC------------ccccccceEEEEeCCCCchHHHHHHHHHhC-CeeEEEEE
Q 015208 322 VTVVSRGPD------------TELLVANPVELSGKGRPLVFHDITLALKML-DICIFSAE 368 (411)
Q Consensus 322 ~~i~~~~~~------------~~~~~~~~~~v~~~DRpGil~dvt~~l~~~-gi~I~~~~ 368 (411)
...++.... ++......+.+.=++|||-+.+....|... +|+-|+=.
T Consensus 484 ~~~l~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR 543 (591)
T PLN02550 484 TVNLTSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR 543 (591)
T ss_pred eEeCCCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee
Confidence 322211110 111112356677889999999999998863 66655554
No 264
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.88 E-value=45 Score=23.32 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEEEEe---CCchhHHHHHHHHHHhCCeEEEE
Q 015208 246 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 274 (411)
Q Consensus 246 vi~v~~---~DRpGLL~~i~~~l~~~g~~i~~ 274 (411)
.|++.| .+.||++.++...|.+.|+++..
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~ 33 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEM 33 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 355554 46799999999999999999973
No 265
>PRK08526 threonine dehydratase; Provisional
Probab=64.57 E-value=47 Score=34.00 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.......+.+.-+||||-|.+++..+.+.+.||....-
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEE
Confidence 35567889999999999999999999999999987655
No 266
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=64.08 E-value=53 Score=23.77 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=26.8
Q ss_pred EEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 110 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 110 t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
..|.+.+. +.||+++++..+|.+.|++|. .+.|
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~ 37 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD 37 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc
Confidence 35677774 789999999999999999995 4444
No 267
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=63.13 E-value=95 Score=37.35 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=56.6
Q ss_pred cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc--cccCcceeeEEEEEEEcCCCCCCC----hhhHHHHHHHHhcc
Q 015208 336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR--HMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMG 409 (411)
Q Consensus 336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~--~~~g~~~~~~~~f~v~~~~g~~~~----~~~~~~~~~~~~~~ 409 (411)
.+.+.+....+|..|+++.-+|..+|+.|.+-..-. +..|...| ++.|++..+.+...+ ++.+.+++.+...|
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~-i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVW-IHDFGLQYPDGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEE-EEEEEEecCCCccccHHHHHHHHHHHHHHHhcC
Confidence 458899999999999999999999999998876642 22344444 999999999887665 32356777766655
Q ss_pred C
Q 015208 410 W 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 568 ~ 568 (1528)
T PF05088_consen 568 R 568 (1528)
T ss_pred C
Confidence 4
No 268
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=62.83 E-value=18 Score=36.46 Aligned_cols=59 Identities=15% Similarity=0.051 Sum_probs=44.6
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
.++|.+.||-||.+|+-..|...+||+...+++ .. ...|+.-| .++.. ..+.++.+|.+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid--~~-------~~IYln~p---~l~~~-~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PI-------GRIYLNFP---ELEFE-SFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec--CC-------CeEEEecc---ccCHH-HHHHHHHHHhc
Confidence 589999999999999999999999999999997 22 22355533 34455 56666666654
No 269
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.49 E-value=18 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=27.4
Q ss_pred EEEEeCC---CCchHHHHHHHHHhCCeeEEEEEec
Q 015208 339 VELSGKG---RPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 339 ~~v~~~D---RpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+.|.+ .||++.++...|++.+++|......
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 4555655 8999999999999999999988876
No 270
>PRK00907 hypothetical protein; Provisional
Probab=62.44 E-value=36 Score=27.27 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=43.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEe--eecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR--RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~--~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
.+-+.|.|.++++|...|..++..+.......++.. +..|.-..=.+.+. +++.++++.|-++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~-----ats~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR-----AESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 378999999999999999999999887665555531 12343222222233 444578888877764
No 271
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=61.52 E-value=67 Score=24.12 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=38.2
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 110 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 110 t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
+.|++.+ .+.+|+++++..+|+++|+++... .+ .+.. -.|.|...+-. .+...+..|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~-s~~~--is~~v~~~~~~-~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--ST-SEVS--VSLTLDPTKNL-SDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--Ec-CCcE--EEEEEEchhhc-cchHHHHHHHHHHHh
Confidence 3566643 678999999999999999999543 23 3322 24555443211 112345566666555
No 272
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.26 E-value=58 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.8
Q ss_pred EEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 015208 110 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 110 t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
..|.+.+. +++|.++++.+.|++.|+++.....
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 35666664 6899999999999999999976544
No 273
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=61.13 E-value=26 Score=25.43 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=29.5
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEc
Q 015208 27 CPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIG 68 (411)
Q Consensus 27 ~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~ 68 (411)
.+|.+|.++++.+.|.++|.||.-...+. .+....-.|.|..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH
Confidence 47899999999999999999998544332 2211334466653
No 274
>PRK11898 prephenate dehydratase; Provisional
Probab=61.09 E-value=62 Score=31.41 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=33.9
Q ss_pred ceEEEEEEecC-cccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208 108 DVFLLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157 (411)
Q Consensus 108 ~~t~i~v~~~D-r~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~ 157 (411)
..+.+-+..++ +||-|+++...|+.+|+|+.+-.-.-..+....-.|||.
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd 245 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFID 245 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEE
Confidence 34556666554 699999999999999999965444332233333467774
No 275
>PRK08526 threonine dehydratase; Provisional
Probab=60.39 E-value=21 Score=36.49 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc
Q 015208 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR 371 (411)
Q Consensus 337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~ 371 (411)
..+.+.=.||||-|.++...+.+.+.||.+.+-.|
T Consensus 327 ~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 327 MKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred EEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 37888899999999999999999999999998875
No 276
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=60.26 E-value=68 Score=26.97 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 230 SNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 230 ~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
+|..|++ ++++..+.+.++ |-+|+|..|.+.|++.|+-|. -++
T Consensus 53 vp~~V~~----~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIF--avS 98 (128)
T COG3603 53 VPDVVQI----EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIF--AVS 98 (128)
T ss_pred CCcceEe----cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEE--EEE
Confidence 3555553 457788888875 899999999999999999998 555
No 277
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.14 E-value=51 Score=22.29 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=24.7
Q ss_pred EEEEEeCC---chhHHHHHHHHHHhCCeEEEEE
Q 015208 246 LVQIVCQD---HKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 246 vi~v~~~D---RpGLL~~i~~~l~~~g~~i~~a 275 (411)
+|++.+.+ .+|++.++.++|.++++++..-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 45566555 8999999999999999999843
No 278
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=56.33 E-value=25 Score=24.51 Aligned_cols=33 Identities=33% Similarity=0.309 Sum_probs=27.9
Q ss_pred eEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 338 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 338 ~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+.+.|. +++|++.++...|++.++++.....+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 3566665 88999999999999999999888765
No 279
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=55.89 E-value=66 Score=24.30 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 253 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 253 DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
-+||+++++..+|+++|+++. .|+ +....+ .|.+.. ..+++ +.+++|.+.|..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd--~I~--~s~~~i--sftv~~--~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVD--LIS--TSEVHV--SMALHM--ENAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEE--EEE--eCCCEE--EEEEeh--hhcCh-HHHHHHHHHHHH
Confidence 459999999999999999999 554 222222 244432 12332 256677776644
No 280
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.05 E-value=18 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.052 Sum_probs=24.3
Q ss_pred CCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 344 KGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 344 ~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.++||++.++...|.+.|++|......
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 578999999999999999999887665
No 281
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=54.55 E-value=1.7e+02 Score=30.98 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 320 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 320 (411)
+.....+.|.=+||||=|..++++|... ||.+-+-.. .+.....+|+.-. +.+++++++|.+.|.+ ...
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~--~~~~~a~v~vgie----~~~~~~~~~l~~~L~~---~Gy 390 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY--ADRKDAHIFVGVQ----LSNPQERQEILARLND---GGY 390 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe--cCCCeEEEEEEEE----eCCHHHHHHHHHHHHH---cCC
Confidence 3466788999999999999999999984 555444331 2323343554321 3456788888888754 222
Q ss_pred eEEEec-------------cCCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 321 RVTVVS-------------RGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 321 ~~~i~~-------------~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+..++ .|..+.......+.+.=+.|||-|.+.-..|.. .-||...+-.
T Consensus 391 ~~~dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Yr 452 (499)
T TIGR01124 391 SVVDLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHYR 452 (499)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEEe
Confidence 232221 111111111225677789999999887665432 2255555554
No 282
>PRK00907 hypothetical protein; Provisional
Probab=54.10 E-value=34 Score=27.44 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=40.6
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE----EEcCcEEEEEEEEEcCC
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDV----STDGKWCYIVFWVIGDS 70 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i----~tdg~~~~d~f~V~~~~ 70 (411)
.+-+.|.|.+.+++...|..++..+.-..-...+ |+.|.+..-.+.|...+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats 71 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES 71 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC
Confidence 3789999999999999999999998776555555 56888777777777533
No 283
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.59 E-value=78 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.3
Q ss_pred EEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208 246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
+|++.|. ++||++..+...|++.|+++...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i 35 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMI 35 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 5666664 78999999999999999999844
No 284
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.52 E-value=78 Score=22.40 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=26.5
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 110 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 110 t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
..|.+++ ++.+|+++++...|++.|++|.....
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566666 47789999999999999999975544
No 285
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=51.47 E-value=90 Score=32.31 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=35.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208 109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158 (411)
Q Consensus 109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~ 158 (411)
.+.|-+..+|+||-|+++.+.|+.+|+|+.+-.-.-.......-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 57777777999999999999999999999644433222222233577744
No 286
>PRK14646 hypothetical protein; Provisional
Probab=51.25 E-value=73 Score=28.07 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
|-.-+..++.++|+-+..++.. ..|+.. +-+.|+..++|..++-+ -|+.+.++|+.
T Consensus 9 i~~li~p~~~~~G~eLvdve~~--~~~~~~--~LrV~IDk~~g~gVtld-DC~~vSr~is~ 64 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQ--TNQNPI--VIKIIIKKTNGDDISLD-DCALFNTPASE 64 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--eCCCCe--EEEEEEECCCCCCccHH-HHHHHHHHHHH
Confidence 4445777888999999999988 666666 67789987777778866 58888877764
No 287
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.93 E-value=1e+02 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=25.0
Q ss_pred eEEEEEe---CCchhHHHHHHHHHHhCCeEEEEE
Q 015208 245 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 245 tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
+.|++.| .+++|+++++.++|++.++++..-
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i 35 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILI 35 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 3566644 478999999999999999999843
No 288
>PRK14630 hypothetical protein; Provisional
Probab=50.40 E-value=1.5e+02 Score=25.72 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 253 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 253 DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
|.--+-..+..++.++|+.+........ .+...-- +|++ .+| ++ =+.++.+.+++...+..
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~-~~~~~lr-V~Id~~~g--V~-idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRN-RNEGKIQ-IVLYKKDS--FG-VDTLCDLHKMILLILEA 67 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEec-CCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 3445566778889999999998887621 2334443 4555 445 33 35678888887666643
No 289
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.77 E-value=1.5e+02 Score=30.35 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=31.6
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 143 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~ 143 (411)
.......+.+.-+||||-|.+++..+...+.||...+-.
T Consensus 321 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 321 YEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 345678899999999999999999777777799855543
No 290
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=49.55 E-value=73 Score=24.06 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 117 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 117 ~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
.-.+|+++++.+.|+++|+||... .+ .. .--.|.|... .. .++.++.|.+.|++
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I--~~-s~--~~isftv~~~--~~-~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLI--ST-SE--VHVSMALHME--NA-EDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEE--Ee-CC--CEEEEEEehh--hc-ChHHHHHHHHHHHH
Confidence 346899999999999999999644 33 22 2224544332 21 12356667666666
No 291
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=49.44 E-value=48 Score=34.22 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=44.7
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEeccccc-CcceeeEEEEEEEcCCCCCCChhhHHHHHHHH
Q 015208 338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMI-GDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL 406 (411)
Q Consensus 338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~-g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~ 406 (411)
.+.+...+ +|-|.++-++|.++++||.++++. |.. .....+.+.|+|.- ++..-+.+++++.+++.
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr-~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~ 107 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETR-PTRTLSNADVDYSCLITL-EANEINMSLLIESLRGN 107 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecC-CccccCCCCCceEEEEEE-eccHhhHHHHHHHHHhh
Confidence 55666555 999999999999999999999997 121 11111256788874 44444444467777763
No 292
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=49.05 E-value=29 Score=36.78 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=32.0
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
.++|.|.||.|+..+|...|..+++|+....|..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 4789999999999999999999999999999965
No 293
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.81 E-value=89 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.7
Q ss_pred EEEEe---CCchhHHHHHHHHHHhCCeEEEEE
Q 015208 247 VQIVC---QDHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 247 i~v~~---~DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
|++.| .+.||++.++...|.+.|+++..-
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMI 34 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 45554 467999999999999999999733
No 294
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.63 E-value=1e+02 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=23.8
Q ss_pred EEEEEeC--CchhHHHHHHHHHHhCCeEEEE
Q 015208 246 LVQIVCQ--DHKGLLYDIMRTLKDYNIQVSY 274 (411)
Q Consensus 246 vi~v~~~--DRpGLL~~i~~~l~~~g~~i~~ 274 (411)
+|.+.|. ..+|++.++..+|.+.|++|..
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~ 33 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQM 33 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 4566664 4689999999999999999973
No 295
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.36 E-value=31 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.7
Q ss_pred cCcccHHHHHHHHHHhCCceEEEE
Q 015208 117 YDRKGLLYDVTAVLCELELTIEKV 140 (411)
Q Consensus 117 ~Dr~GLl~~i~~~L~~~glnI~~A 140 (411)
++.||+++++...|+++|+||...
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE
Confidence 678999999999999999999644
No 296
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=48.28 E-value=1.4e+02 Score=36.10 Aligned_cols=79 Identities=15% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC--C--CeEEEEEEEEcCCCcCCC-HhHHHHHHHHHHHH
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP--D--GKVMDLFFVTDTRELLHT-RKRKEDTYEHLKTI 179 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~--~--~~~~d~F~V~~~~~~~~~-~~~~~~l~~~L~~~ 179 (411)
..++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+... + ...+..|++..+.+...+ .+..+.+++.+.++
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999998766432 2 246778889887765433 34556788888877
Q ss_pred Hccc
Q 015208 180 LGNA 183 (411)
Q Consensus 180 L~~~ 183 (411)
..+.
T Consensus 565 ~~g~ 568 (1528)
T PF05088_consen 565 WNGR 568 (1528)
T ss_pred hcCC
Confidence 7654
No 297
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=47.85 E-value=31 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=24.9
Q ss_pred EEEEEe-cCcccHHHHHHHHHHhCCceEEEE
Q 015208 111 LLKLSC-YDRKGLLYDVTAVLCELELTIEKV 140 (411)
Q Consensus 111 ~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A 140 (411)
.|+|.+ ++.||.++++.+.|+++|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 455555 566999999999999999999766
No 298
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=46.59 E-value=19 Score=30.19 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=26.9
Q ss_pred EEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 339 VELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 339 ~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+.|. |=+|||..|.+.|+|+||.|+-.++=
T Consensus 66 lk~~gpf~FgltGilasV~~pLsd~gigIFavSty 100 (128)
T COG3603 66 LKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY 100 (128)
T ss_pred EEEeccccCCcchhhhhhhhhHhhCCccEEEEEec
Confidence 344454 88999999999999999999988864
No 299
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.18 E-value=45 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=26.3
Q ss_pred EEEEe---CCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 339 VELSG---KGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 339 ~~v~~---~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
+.+.| .+.||++.++...|++.|+++.....+
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 45555 267999999999999999999888644
No 300
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=46.15 E-value=1.4e+02 Score=30.61 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
+.....+.+.=+||||=|.++...+...+.||.+-+-.. ..+.....+++.-. +.++++.+++.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~~~~v~v~iE----~~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRETGPALIGIE----LNDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCCeEEEEEEEE----eCCHHHHHHHHHHHHH
Confidence 456678899999999999999997777777998555431 12322333332211 3345788888888744
No 301
>PRK08639 threonine dehydratase; Validated
Probab=44.80 E-value=1.7e+02 Score=30.07 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=30.8
Q ss_pred CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.+.....+.+.-+||||-|.+++..+...+.||..-+=
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~ 369 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEY 369 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 35567889999999999999999966666669976543
No 302
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=44.54 E-value=59 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208 247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 278 (411)
Q Consensus 247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~ 278 (411)
++|.|.||.||..++-..|...++|+....|.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 68999999999999999999999999977775
No 303
>PRK14633 hypothetical protein; Provisional
Probab=43.87 E-value=2.2e+02 Score=24.84 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCccccc
Q 015208 257 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLV 335 (411)
Q Consensus 257 LL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~~ 335 (411)
+-..+..++.++|+.+..-.+. ..|...-- .+++ .+| ++ =+.++.+.+++.+.|... . ....
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~--~~~~~~lr-V~ID~~~G--v~-lddC~~vSr~i~~~LD~~--------d---~i~~ 68 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVV--GSGKLTIR-IFIDHENG--VS-VDDCQIVSKEISAVFDVE--------D---PVSG 68 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEE-EEEeCCCC--CC-HHHHHHHHHHHHHHhccC--------c---CCCC
Confidence 4455678899999999988887 34444443 3445 445 33 357888888887777531 0 0123
Q ss_pred cceEEEEeC--CCCchHHHHHHHHHhCCeeE
Q 015208 336 ANPVELSGK--GRPLVFHDITLALKMLDICI 364 (411)
Q Consensus 336 ~~~~~v~~~--DRpGil~dvt~~l~~~gi~I 364 (411)
.|.+||+++ ||| |...-.+-+-.|=.|
T Consensus 69 ~Y~LEVSSPGldRp--L~~~~~f~r~~G~~v 97 (150)
T PRK14633 69 KYILEVSSPGMNRQ--IFNIIQAQALVGFNV 97 (150)
T ss_pred CeEEEEeCCCCCCC--CCCHHHHHHhCCCeE
Confidence 578888876 555 444455555555443
No 304
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.44 E-value=1.2e+02 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.4
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 015208 111 LLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 111 ~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
.|.+++. +++|+.+++...|++.|+++.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 6899999999999999999976544
No 305
>PRK08639 threonine dehydratase; Validated
Probab=42.32 E-value=1.5e+02 Score=30.39 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=44.3
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 314 (411)
Q Consensus 241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~ 314 (411)
+.....+.+.-+||||-|.++...+...+-||..-+-... .+.....+++ ..+ +.++++.+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~-~~~~~~~v~v-~iE---~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKK-NNRETGPVLV-GIE---LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeec-CCCCceEEEE-EEE---eCCHHHHHHHHHHHHH
Confidence 4566788999999999999999966666668885543211 1222222332 211 3345788888888744
No 306
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=42.09 E-value=1.1e+02 Score=20.96 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred EEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208 246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG 275 (411)
Q Consensus 246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a 275 (411)
.|++.|. +++|+++++...|.+.++++..-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 4666554 88999999999999999999733
No 307
>PRK14636 hypothetical protein; Provisional
Probab=41.77 E-value=1.2e+02 Score=27.29 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 348 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 348 Gil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
-|-.-+..++.++|+-+..++.. ..|+.. +-+.||..+.|.+++-+ -|+.+.++|+.
T Consensus 6 ~i~~lvep~~~~~GleLvdve~~--~~~~~~--~lrV~ID~~~~ggV~lD-DC~~vSr~Is~ 62 (176)
T PRK14636 6 ALTALIEPEAKALGLDLVRVAMF--GGKSDP--TLQIMAERPDTRQLVIE-DCAALSRRLSD 62 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEE--cCCCCe--EEEEEEECCCCCCcCHH-HHHHHHHHHHH
Confidence 35556788899999999999987 555555 66788977766678866 58888887754
No 308
>PRK14638 hypothetical protein; Provisional
Probab=40.97 E-value=2.5e+02 Score=24.56 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCccccc
Q 015208 257 LLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLV 335 (411)
Q Consensus 257 LL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~~ 335 (411)
+-..+..++.++|+.+.+..+. ..| .+.-- .+++..+..++ =+.++.+.+.|.++|...- ....
T Consensus 10 i~~~~~~i~~~~G~elvdve~~--~~~~~~~lr-V~ID~~~G~v~-lddC~~vSr~is~~LD~~d-----------~i~~ 74 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYR--RESRGWVLR-IIIDNPVGYVS-VRDCELFSREIERFLDRED-----------LIEH 74 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--ecCCCcEEE-EEEECCCCCcC-HHHHHHHHHHHHHHhcccc-----------ccCC
Confidence 3445677889999999988887 333 44443 45553322244 3578888888887776320 0112
Q ss_pred cceEEEEeC--CCCchHHHHHHHHHhCCe
Q 015208 336 ANPVELSGK--GRPLVFHDITLALKMLDI 362 (411)
Q Consensus 336 ~~~~~v~~~--DRpGil~dvt~~l~~~gi 362 (411)
.|.+||+++ ||| |...-.+-+-.|=
T Consensus 75 ~Y~LEVSSPGldRp--L~~~~~f~r~~G~ 101 (150)
T PRK14638 75 SYTLEVSSPGLDRP--LRGPKDYVRFTGK 101 (150)
T ss_pred ceEEEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 467777765 454 3333344444443
No 309
>PRK14640 hypothetical protein; Provisional
Probab=40.63 E-value=2.5e+02 Score=24.54 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCcccc
Q 015208 256 GLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELL 334 (411)
Q Consensus 256 GLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~ 334 (411)
-+-..+..++.++|+.+..-.+... .+.+.-- .|++ .+| ++ =+.++.+.++|.++|... + ...
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~-~~~~~lr-V~ID~~~g--v~-lddC~~vSr~is~~LD~~----------d-~i~ 70 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRA-GKHSTLR-VYIDGENG--VS-VENCAEVSHQVGAIMDVE----------D-PIT 70 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEec-CCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhccc----------c-cCC
Confidence 3455677889999999999888731 2334442 4555 445 44 457889999988877642 0 112
Q ss_pred ccceEEEEeCCCCchHHHHHHHHHhCCeeE
Q 015208 335 VANPVELSGKGRPLVFHDITLALKMLDICI 364 (411)
Q Consensus 335 ~~~~~~v~~~DRpGil~dvt~~l~~~gi~I 364 (411)
..|.+||+++.=-.-|...-.+-+-.|-.|
T Consensus 71 ~~Y~LEVSSPGl~RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 71 EEYYLEVSSPGLDRPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 356888887632223444555555566554
No 310
>PRK14634 hypothetical protein; Provisional
Probab=40.57 E-value=1.2e+02 Score=26.63 Aligned_cols=56 Identities=7% Similarity=-0.083 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
+-.-+..++.++|+-+..++.. ..|+.. +-+.|+..++|.+++-+ -|+.+.++|+.
T Consensus 9 i~~l~~~~~~~~G~elvdve~~--~~~~~~--~lrV~ID~~~g~~v~ld-dC~~vSr~is~ 64 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVL--THLQPM--TLQVQIRRSSGSDVSLD-DCAGFSGPMGE 64 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--eCCCCc--EEEEEEECCCCCcccHH-HHHHHHHHHHH
Confidence 3444667788999999999988 565555 66788987888778866 58888877754
No 311
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=39.85 E-value=2.1e+02 Score=29.31 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208 252 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 318 (411)
Q Consensus 252 ~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 318 (411)
+.-.|++....++|++.|+||+ -|+ .....+--.++++ ++..++--++|.+++-.
T Consensus 482 q~ss~i~~rmF~~l~e~giNvq--MIS--QGAskvNIS~ivn--------e~ea~k~v~~lH~~~~e 536 (559)
T KOG0456|consen 482 QNSSGILERMFCVLAENGINVQ--MIS--QGASKVNISCIVN--------EKEAEKCVQALHKAFFE 536 (559)
T ss_pred hhhhHHHHHHHHHHHhcCccee--eec--cccccceEEEEEC--------hHHHHHHHHHHHHHHcC
Confidence 3457999999999999999999 565 2334444334443 23344444555544433
No 312
>PRK02047 hypothetical protein; Provisional
Probab=39.64 E-value=1e+02 Score=24.55 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE----EEcCcEEEEEEEEEcC
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDV----STDGKWCYIVFWVIGD 69 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i----~tdg~~~~d~f~V~~~ 69 (411)
.+.+.|.+++.+++...+..++..+...+..+.+ |+.|.+..-.+.|.-.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~ 69 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT 69 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC
Confidence 5889999999999999999999999777666555 4588876666666643
No 313
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=39.51 E-value=1.9e+02 Score=24.79 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCccccccceE
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPV 339 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~~~~~~ 339 (411)
|..++..+|+.+....+.. .| ...--+ +++.++. ++ =+.++++.+.+.+.|...- .....|.+
T Consensus 2 i~~~~~~~g~~l~~v~~~~--~~~~~~l~V-~id~~~g-v~-lddc~~~sr~i~~~LD~~d-----------~i~~~y~L 65 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVK--EGGNRILRV-FIDKDGG-VS-LDDCEKVSRAISALLDAED-----------PIPEDYTL 65 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEE--ETTEEEEEE-EEE-SS-----HHHHHHHHHHHGGGTTTS---------------S-EEE
T ss_pred cccchhhcCCEEEEEEEEE--CCCCEEEEE-EEEeCCC-CC-HHHHHHHHHHHHHHHcccc-----------ccCcceEE
Confidence 4577889999999999883 44 334433 3443444 55 4678888888776665410 01235678
Q ss_pred EEEeC--CCCch
Q 015208 340 ELSGK--GRPLV 349 (411)
Q Consensus 340 ~v~~~--DRpGi 349 (411)
||+++ |||=-
T Consensus 66 EVSSPG~~r~L~ 77 (141)
T PF02576_consen 66 EVSSPGIDRPLK 77 (141)
T ss_dssp EEE--SSSS--S
T ss_pred EEeCCCCCCcCC
Confidence 88765 55544
No 314
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.50 E-value=3.3e+02 Score=28.76 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=70.5
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcc----
Q 015208 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSAS---- 92 (411)
Q Consensus 19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~---- 92 (411)
....+.|.-|||||-|.+++.+|.. .||..-+-.. +.. -..+|....-.+ ...+.+.+.|++.--...+..
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~-~a~v~vgie~~~~~~~~~l~~~L~~~Gy~~~dls~ne~ 400 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRK-DAHIFVGVQLSNPQERQEILARLNDGGYSVVDLTDDEL 400 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCC-eEEEEEEEEeCCHHHHHHHHHHHHHcCCCeEECCCCHH
Confidence 3467888999999999999999997 5887665533 222 223443333222 234455566655311100000
Q ss_pred eeeeeccccc--CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe--CCCCeEEEEEEE
Q 015208 93 VVLYYRAEMQ--APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST--TPDGKVMDLFFV 156 (411)
Q Consensus 93 ~~~~~~~~~~--~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T--~~~~~~~d~F~V 156 (411)
.+.+.+.-+. .+...+--...+.=|.|||-|-+...+|. -+.||..-+=-. ...|+++--|.+
T Consensus 401 ~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr~~~~~~g~~l~gi~~ 467 (499)
T TIGR01124 401 AKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYRNHGADYGRVLAGFQV 467 (499)
T ss_pred HHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEecCCcccCCEEEEEec
Confidence 0111111111 11123345667778999998888877443 345664444311 012445555555
No 315
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.46 E-value=41 Score=25.94 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=24.6
Q ss_pred CCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 344 KGRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 344 ~DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+.||.+.+|-..|++.|+||....++
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~qs 38 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVATS 38 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEec
Confidence 477999999999999999999999764
No 316
>PRK14639 hypothetical protein; Provisional
Probab=38.81 E-value=2.6e+02 Score=24.14 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCccccccceEE
Q 015208 261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVE 340 (411)
Q Consensus 261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 340 (411)
+..++.++|+.+...... ..|..-.=.++++..|. ++ =+.++++.+++.+.|.. .......|.+|
T Consensus 3 ~ep~~~~~G~eLvdve~~--~~~~~~~lrV~Id~~~g-v~-iddC~~vSr~is~~LD~-----------~d~i~~~Y~LE 67 (140)
T PRK14639 3 LEALCKECGVSFYDDELV--SENGRKIYRVYITKEGG-VN-LDDCERLSELLSPIFDV-----------EPPVSGEYFLE 67 (140)
T ss_pred hhHhHHhCCCEEEEEEEE--ecCCCcEEEEEEeCCCC-CC-HHHHHHHHHHHHHHhcc-----------ccccCCCeEEE
Q ss_pred EEeC--CCC
Q 015208 341 LSGK--GRP 347 (411)
Q Consensus 341 v~~~--DRp 347 (411)
|+++ |||
T Consensus 68 VSSPGl~Rp 76 (140)
T PRK14639 68 VSSPGLERK 76 (140)
T ss_pred EeCCCCCCc
No 317
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=38.17 E-value=1.5e+02 Score=22.72 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=35.5
Q ss_pred CCCCchHH----HHHHHHHhCCee-EEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhccC
Q 015208 344 KGRPLVFH----DITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW 410 (411)
Q Consensus 344 ~DRpGil~----dvt~~l~~~gi~-I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~~ 410 (411)
.-|||++- .+.+.|+++|++ +.++.+. +. +.|.+ +.+....+++ -++.+++.|..|
T Consensus 8 ~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~------k~---~~l~~-~~~~~~~a~~-~v~~i~~~lL~N 68 (80)
T PRK05974 8 TLKEGVLDPQGQAIKGALGSLGYDGVEDVRQG------KY---FELEL-EGESEEKAEA-DLKEMCEKLLAN 68 (80)
T ss_pred EECCCCcChHHHHHHHHHHHcCCCCcceEEEE------EE---EEEEE-cCCchhhhHH-HHHHHHHHhcCC
Confidence 35777774 478889999997 7776665 33 22333 2233345566 488888877665
No 318
>PRK14632 hypothetical protein; Provisional
Probab=37.13 E-value=3.1e+02 Score=24.56 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCccccc
Q 015208 257 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLV 335 (411)
Q Consensus 257 LL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~~ 335 (411)
|-..+..++.++|+.+....+. ..+.+.-- .|++ ..| ++ =+.++.+.+++.++|...- ....
T Consensus 10 i~~li~pv~~~~G~eLvdve~~--~~~~~~lr-V~ID~~~G--V~-ldDC~~vSr~is~~LD~~d-----------~i~~ 72 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELS--YGGRTVVR-LFVDGPEG--VT-IDQCAEVSRHVGLALEVED-----------VISS 72 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEE-EEEECCCC--CC-HHHHHHHHHHHHHHhcccc-----------cCCC
Confidence 3445567788999999999976 33444443 3445 344 33 3567888888877776320 0112
Q ss_pred cceEEEEeC--CCCchHHHHHHHHHhCCe
Q 015208 336 ANPVELSGK--GRPLVFHDITLALKMLDI 362 (411)
Q Consensus 336 ~~~~~v~~~--DRpGil~dvt~~l~~~gi 362 (411)
.|.|||+++ ||| |...-.+-+-.|-
T Consensus 73 ~Y~LEVSSPGldRp--L~~~~~f~r~iG~ 99 (172)
T PRK14632 73 AYVLEVSSPGLERP--FFRAEQMSPYVGR 99 (172)
T ss_pred CeEEEEeCCCCCCc--CCCHHHHHHhCCC
Confidence 467777765 555 3333344333443
No 319
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=36.98 E-value=1.4e+02 Score=20.63 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=24.4
Q ss_pred EEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 015208 112 LKLSC---YDRKGLLYDVTAVLCELELTIEKVK 141 (411)
Q Consensus 112 i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~ 141 (411)
|++.+ ++.+|+++++.+.|++.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 5678999999999999999996544
No 320
>PLN02828 formyltetrahydrofolate deformylase
Probab=36.35 E-value=3.3e+02 Score=26.32 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=53.7
Q ss_pred HHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCC-CccHHHHHHHHHhhCCCCCCcceeeeecccccCCCCCceEEEE
Q 015208 37 LCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDS-QTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLK 113 (411)
Q Consensus 37 i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~i~ 113 (411)
++++|+++|+||.+++.++ ...+|..-..+..+. ....+.+++.+...-.... . .+....+.... ....|-
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~--~~~ria 74 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFK-A---LKSVVRVPGLD--PKYKIA 74 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcC-C---cceEEEEccCC--CCcEEE
Confidence 4789999999999999987 233354443343221 1234566666655322111 0 00000011111 123344
Q ss_pred EEecCcccHHHHHHHHHHhCCceEEEEEEEeCC
Q 015208 114 LSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 146 (411)
Q Consensus 114 v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~ 146 (411)
|...-..--|.++......-.+++.=+-+.|.+
T Consensus 75 vlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~ 107 (268)
T PLN02828 75 VLASKQDHCLIDLLHRWQDGRLPVDITCVISNH 107 (268)
T ss_pred EEEcCCChhHHHHHHhhhcCCCCceEEEEEeCC
Confidence 444444445777777777766655555666644
No 321
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.47 E-value=1.7e+02 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=26.5
Q ss_pred EEEEEec--CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208 111 LLKLSCY--DRKGLLYDVTAVLCELELTIEKVKIST 144 (411)
Q Consensus 111 ~i~v~~~--Dr~GLl~~i~~~L~~~glnI~~A~I~T 144 (411)
.|.+++. ..+|+++++..+|++.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 457999999999999999997655544
No 322
>PRK14645 hypothetical protein; Provisional
Probab=35.04 E-value=1.9e+02 Score=25.44 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhc
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 408 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~ 408 (411)
|-..+..++.++|+-+..++.. ..|+.. +-+.||..++|.+++-+ -|+.+.+.|+
T Consensus 11 i~~li~~~~~~~G~elvdve~~--~~~~~~--ilrV~ID~~~~~~v~ld-dC~~vSr~is 65 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQ--RSGGKR--IVLVRIDRKDEQPVTVE-DLERASRALE 65 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--eCCCCe--EEEEEEECCCCCCcCHH-HHHHHHHHHH
Confidence 4455688899999999999998 555555 55678876667778866 5777777764
No 323
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.28 E-value=78 Score=22.92 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=25.8
Q ss_pred eEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208 338 PVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 370 (411)
Q Consensus 338 ~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~ 370 (411)
.+.+.|. +.||++..+.++|.+.++++.....+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCC
Confidence 3567776 78999999999999998887544433
No 324
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=34.15 E-value=1.9e+02 Score=21.39 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=26.3
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 015208 110 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 142 (411)
Q Consensus 110 t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I 142 (411)
+.|++.+ .+.+|+++++.+.|+++++++.....
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 3566654 47889999999999999999975544
No 325
>PRK00341 hypothetical protein; Provisional
Probab=33.33 E-value=1.4e+02 Score=23.82 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE----EEcCcEEEEEEEEEcC
Q 015208 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDV----STDGKWCYIVFWVIGD 69 (411)
Q Consensus 21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i----~tdg~~~~d~f~V~~~ 69 (411)
+.+.|.|.+.+++-..|.+++..+. ....+.+ |+.|.+..-.+.|.-.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~ 69 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT 69 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC
Confidence 8899999999999999999999886 6655654 4588877666666643
No 326
>PRK00341 hypothetical protein; Provisional
Probab=32.95 E-value=1.8e+02 Score=23.10 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=42.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEe-eecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR-RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~-~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
+-+.|.|.+.+++...|..++..+. ....+.+.. ...++++.- +-++. .+.+++++..|-++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S-~tv~i---~~~s~~q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTT-VQLHI---VATDEDQLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEE-EEEEE---EECCHHHHHHHHHHHh
Confidence 7889999999999999999998776 665554431 112344432 22321 1445677788877763
No 327
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.83 E-value=2e+02 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.2
Q ss_pred EEEEEeC---CchhHHHHHHHHHHhCCeEEE
Q 015208 246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~ 273 (411)
+|.+.|. +.||++..+.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 5667775 779999999999999887774
No 328
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.16 E-value=99 Score=24.45 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 350 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 350 l~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
+.++.+.|.++|+.+...... ..+.. +....||+.||+|..+.
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~--~~~~~-~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVP--RTGAR-GPITSVYFRDPDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCccc--ccCCC-CCccEEEEECCCCCEEE
Confidence 888999999999998755544 21211 11355899999998654
No 329
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=29.87 E-value=1.6e+02 Score=21.68 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCC
Q 015208 127 TAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 160 (411)
Q Consensus 127 ~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~ 160 (411)
......+|..++.=.+.| .||+++.+|.|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T-~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTT-EDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE--TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEe-CCCcEEEEEEccCCC
Confidence 456788999999989987 999999999996654
No 330
>PRK02047 hypothetical protein; Provisional
Probab=29.78 E-value=2.8e+02 Score=21.95 Aligned_cols=66 Identities=6% Similarity=0.140 Sum_probs=43.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEe-eecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208 244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR-RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 313 (411)
Q Consensus 244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~-~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~ 313 (411)
.+.+.+.|.+.+++...+..++..+......+.+++ ...++++.- +-++. .+++++++..|-++|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~S-vtv~v---~v~s~eq~~~iY~~L~ 82 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTG-LTITV---RATSREQLDNIYRALT 82 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEE-EEEEE---EECCHHHHHHHHHHHh
Confidence 478999999999999999999999977665555531 012334331 33322 1455677777777653
No 331
>PRK08841 aspartate kinase; Validated
Probab=28.85 E-value=3.1e+02 Score=27.89 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHHhCCeEEE
Q 015208 242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~ 273 (411)
.+..+|.+.|...||+...+..+|.+.|+||.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 45678999999999999999999999999996
No 332
>PRK14646 hypothetical protein; Provisional
Probab=28.80 E-value=4e+02 Score=23.36 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 121 GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
-+...+..++..+|+.+.+.......+++++ .++|..++|..++=+.++.+-+.|...|+.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 3566788889999999999999874445555 555644444445667899999999998874
No 333
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=28.62 E-value=1e+02 Score=22.70 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=30.6
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEc
Q 015208 21 CVITVNC-PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIG 68 (411)
Q Consensus 21 ~~V~v~~-~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~ 68 (411)
..|+|.+ ++.||..+++.+.|+++|+||-=-..+ ... -.|.+..
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 3456664 466999999999999999999755222 222 4566664
No 334
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=27.94 E-value=1.5e+02 Score=21.87 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCC
Q 015208 38 CRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDS 70 (411)
Q Consensus 38 ~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~ 70 (411)
...+..+|..+..=.+.| ||+ ++.+|.+..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGY-iL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGY-ILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSE-EEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCc-EEEEEEccCCC
Confidence 467788999999999988 776 99999998755
No 335
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=27.58 E-value=1.2e+02 Score=23.25 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 350 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 350 l~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
..++...|.+.|..|.+++.+ ..| .+++++.+.+|..+.
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~--~~g-----~yev~~~~~dG~~~e 69 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFD--DDG-----CYEVEARDKDGKKVE 69 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEc--CCC-----EEEEEEEECCCCEEE
Confidence 788999999999999999995 222 255667788887654
No 336
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=26.87 E-value=1.6e+02 Score=23.11 Aligned_cols=50 Identities=12% Similarity=0.004 Sum_probs=31.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCC
Q 015208 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 394 (411)
Q Consensus 339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~ 394 (411)
+-..+.+..- |.+..+-|++.|+.+...-.. ..... .+.||++||+|..+
T Consensus 77 i~~~~~~~~d-l~~~~~~l~~~g~~~~~~~~~---~~~~~--~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 77 IAFLAFDVDD-LDAAYERLKAQGVEIVEEPDR---YYFGS--GYSFYFRDPDGNLI 126 (128)
T ss_dssp EEEEESSHHH-HHHHHHHHHHTTGEEEEEEEE---HSTTC--EEEEEEEETTSEEE
T ss_pred EEEEeccHHH-HHHHHHHHhhcCccEEecCCC---CCCCC--EEEEEEECCCCCEE
Confidence 3444444332 456778889999998866544 22233 44479999998643
No 337
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.78 E-value=4.4e+02 Score=23.18 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHhCCCeEEEEEEEEcC-cEEEEEEEEEcCCC---ccHHHHHHHHHhhCCCCCCcceeeeecccccCCCC
Q 015208 31 TGLGCDLCRIILFFGLSIVRGDVSTDG-KWCYIVFWVIGDSQ---TRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKP 106 (411)
Q Consensus 31 ~Gl~~~i~~~L~~~glnI~~a~i~tdg-~~~~d~f~V~~~~g---~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (411)
..++.-+..++.++|+.+++..+.+.| .|++-+|.=.+ .| .+.+.+-+.+...|+- .++-
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v~lddC~~vSr~is~~LD~---------------edpi 71 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGVTLDDCADVSRAISALLDV---------------EDPI 71 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCCCHHHHHHHHHHHHHHhcc---------------CCcc
Confidence 456778888999999999999999955 56767764443 33 2556666666666541 1222
Q ss_pred CceEEEEEEec--CcccHHHHHHHHHHhCCceE
Q 015208 107 SDVFLLKLSCY--DRKGLLYDVTAVLCELELTI 137 (411)
Q Consensus 107 ~~~t~i~v~~~--Dr~GLl~~i~~~L~~~glnI 137 (411)
.+.|.++|.+| ||| |......-.-.|-.|
T Consensus 72 ~~~Y~LEVSSPGldRp--L~~~~~f~r~~G~~V 102 (153)
T COG0779 72 EGAYFLEVSSPGLDRP--LKTAEHFARFIGEKV 102 (153)
T ss_pred cccEEEEeeCCCCCCC--cCCHHHHHHhcCcEE
Confidence 36788888876 455 444444444445444
No 338
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=26.47 E-value=1.3e+02 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCC
Q 015208 350 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 394 (411)
Q Consensus 350 l~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~ 394 (411)
+.+..+.+.++|+.+...... ..| ...||+.||+|..+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~--~~~-----~~~~~~~DP~G~~i 112 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP--GDG-----VRQLFVRDPDGNRI 112 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC--CCC-----ccEEEEECCCCCEE
Confidence 788899999999998764422 122 44589999999754
No 339
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=26.17 E-value=2.7e+02 Score=21.94 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=38.5
Q ss_pred EEEeCCCCchH----HHHHHHHHhCCee-EEEEEecccccCcceeeEEEEEEEcC-CCCCCChhhHHHHHHHHhccC
Q 015208 340 ELSGKGRPLVF----HDITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEG-DGLSVPRNKIEEGVWKLLMGW 410 (411)
Q Consensus 340 ~v~~~DRpGil----~dvt~~l~~~gi~-I~~~~~~~~~~g~~~~~~~~f~v~~~-~g~~~~~~~~~~~~~~~~~~~ 410 (411)
.|.=.-+||++ ..|.++|..+|++ |.+..+. +. |++.-. +....+.+ .++.++..|..|
T Consensus 5 ~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g------K~-----~el~ld~~~~e~a~~-~v~~mcekLLaN 69 (83)
T COG1828 5 RVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG------KV-----IELELDAESEEKAEE-EVKEMCEKLLAN 69 (83)
T ss_pred EEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee------eE-----EEEEecCcchhHHHH-HHHHHHHHHhCC
Confidence 33344456665 3599999999988 9998887 44 344432 23333345 688888888776
No 340
>PRK14632 hypothetical protein; Provisional
Probab=25.70 E-value=4.9e+02 Score=23.29 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc---cHHHHHHHHHhhCCCCCCcceeeeecccccCCCCCce
Q 015208 33 LGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT---RWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDV 109 (411)
Q Consensus 33 l~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~---~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (411)
+...+..++..+|+.+.+......+.|++=+| |..+.|- +.+.+-+.+..+|+.. +.-.+.
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~-ID~~~GV~ldDC~~vSr~is~~LD~~---------------d~i~~~ 73 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRLF-VDGPEGVTIDQCAEVSRHVGLALEVE---------------DVISSA 73 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhccc---------------ccCCCC
Confidence 55667788999999999999876666665555 4444553 4566666666666421 112345
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceE
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTI 137 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI 137 (411)
|.++|.+|.-.--|...-..-...|-.|
T Consensus 74 Y~LEVSSPGldRpL~~~~~f~r~iG~~V 101 (172)
T PRK14632 74 YVLEVSSPGLERPFFRAEQMSPYVGRQI 101 (172)
T ss_pred eEEEEeCCCCCCcCCCHHHHHHhCCCEE
Confidence 7788877544433555555555555444
No 341
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=25.44 E-value=4.3e+02 Score=26.16 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCC--cCCCHHHHHHHHHH--HHHHHcCC----ceEE
Q 015208 253 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGK--KIVDPSKQNGLSSR--LWMELLQP----LRVT 323 (411)
Q Consensus 253 DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~--~~~~~~~~~~l~~~--L~~~l~~~----~~~~ 323 (411)
-.|--+....+.|..++.|...-.++ ...+.+. ++.. ..+. .|.+ +..++|-.. |...|+.. .+..
T Consensus 191 SHPQal~Qce~~L~~l~~~~~r~a~~--dTa~Aa~--~~s~~~~~d~~AIAS-e~aA~ly~l~Il~~~IqDd~~NvTRFL 265 (377)
T KOG2797|consen 191 SHPQALGQCECSLTKLGPNAAREAVS--DTAGAAE--QISASNTADTAAIAS-ERAAELYGLNILEKNIQDDLGNVTRFL 265 (377)
T ss_pred cCcHHHHHHHHHHHhcccceeeeecc--chHHHHH--HHHhcccccHHHHHH-HHHHHHhcchhhhhhcccccCCeeEEE
Confidence 46888999999999999888754444 1222222 1111 1111 2221 122222110 11222211 1223
Q ss_pred EeccCCCcc---ccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec----c---cccCcceeeEEEEEEEcCCCCC
Q 015208 324 VVSRGPDTE---LLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG----R---HMIGDREWEVYRVLLDEGDGLS 393 (411)
Q Consensus 324 i~~~~~~~~---~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~----~---~~~g~~~~~~~~f~v~~~~g~~ 393 (411)
++.|++-.+ ..-..++--.-.+-||.|+++-.+|+-+.||+.++++. + -..|.+.|+ |.||+.-...+.
T Consensus 266 mLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~-ylFyidfeasma 344 (377)
T KOG2797|consen 266 MLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFE-YLFYIDFEASMA 344 (377)
T ss_pred EEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCccccccccccc-EEEEEEEEeccC
Confidence 444444211 11112344446789999999999999999999999997 1 224567775 458888754443
Q ss_pred CC
Q 015208 394 VP 395 (411)
Q Consensus 394 ~~ 395 (411)
-.
T Consensus 345 e~ 346 (377)
T KOG2797|consen 345 EP 346 (377)
T ss_pred cH
Confidence 33
No 342
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=25.25 E-value=2.8e+02 Score=24.93 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=57.3
Q ss_pred CceEEEEEeCCchhHHHHH-HHHHHh--CCeEEEEEEEEeeecCceEEEEEEEe-cCC-CcC-CCHHHHHHHHHHHHHHH
Q 015208 243 GHTLVQIVCQDHKGLLYDI-MRTLKD--YNIQVSYGRFSRRQRGNCEIDLFIMQ-ADG-KKI-VDPSKQNGLSSRLWMEL 316 (411)
Q Consensus 243 ~~tvi~v~~~DRpGLL~~i-~~~l~~--~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g-~~~-~~~~~~~~l~~~L~~~l 316 (411)
...+|.|.|+|+..+|..+ ++-+.. -|-..+.+-.+ ..|.-..|.|... .+. -.+ .++...+.+.+.|...+
T Consensus 6 ~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~--~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~~~~ 83 (211)
T PF01571_consen 6 HRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLN--PKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLKKYI 83 (211)
T ss_dssp TSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE---TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEEC--CCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHHHhc
Confidence 4689999999999999988 555552 33334444433 3555555544443 333 122 22345556666665443
Q ss_pred cCCceEEEeccCCCccccccceEEEEeCCCCchHHHHH
Q 015208 317 LQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDIT 354 (411)
Q Consensus 317 ~~~~~~~i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt 354 (411)
.. .++.+...+.+ -..+.+.|+.-..++.++.
T Consensus 84 ~~-~~v~i~~~~~~-----~~~~~l~Gp~a~~~l~~~~ 115 (211)
T PF01571_consen 84 LR-SDVEIEDVSDD-----LAVLGLQGPKAAEVLQKLF 115 (211)
T ss_dssp HH-SS-EEEEETTT-----EEEEEEESTTHHHHHHHHS
T ss_pred cc-cCcEEEEcccc-----eeEEEEEcchhhHHHHHhc
Confidence 32 33544433321 2367888887777776665
No 343
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.24 E-value=2.7e+02 Score=20.23 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=23.9
Q ss_pred eEEEEEeC--CchhHHHHHHHHHHhCCeEEE
Q 015208 245 TLVQIVCQ--DHKGLLYDIMRTLKDYNIQVS 273 (411)
Q Consensus 245 tvi~v~~~--DRpGLL~~i~~~l~~~g~~i~ 273 (411)
.+|.+.|. -+||++.++.++|.+.|+++.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~ 33 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPI 33 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEE
Confidence 45666664 268999999999999999997
No 344
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.23 E-value=95 Score=24.78 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
=+.++-.-|.+.|+.+...-..+ -.|. -+....||+.||+|..+.
T Consensus 77 dv~~~~~~l~~~g~~~~~~p~~~-~~~~-~~~~~~~~~~DPdG~~iE 121 (125)
T cd08357 77 EFDALAERLEAAGVEFLIEPYTR-FEGQ-PGEQETFFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHCCCcEecCccee-ccCC-cCceeEEEEECCCCCEEE
Confidence 47888889999999987533221 1111 111345899999998653
No 345
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.17 E-value=2.6e+02 Score=19.89 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=21.9
Q ss_pred eEEEEEeC---CchhHHHHHHHHHHhCCeEE
Q 015208 245 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQV 272 (411)
Q Consensus 245 tvi~v~~~---DRpGLL~~i~~~l~~~g~~i 272 (411)
.+|.+.|. ++||++.++..+|.+.++.+
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~~ 32 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVRM 32 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeEE
Confidence 46677775 78999999999998755544
No 346
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.86 E-value=4.8e+02 Score=22.95 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEEeccCCCcccc
Q 015208 256 GLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELL 334 (411)
Q Consensus 256 GLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~~~~~~~~~~ 334 (411)
.+..-+..++.++|+.+....+. ..| +.+--+ +++..|. ++ =+.++++.+++.+.+...- +..
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~--~~~~~~~lrI-~id~~g~-v~-lddC~~vSr~is~~LD~ed-----------pi~ 72 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFV--KEGRDSVLRI-YIDKEGG-VT-LDDCADVSRAISALLDVED-----------PIE 72 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEE--EcCCCcEEEE-EeCCCCC-CC-HHHHHHHHHHHHHHhccCC-----------ccc
Confidence 44555677889999999999998 344 344432 4443232 33 2467888888887776321 112
Q ss_pred ccceEEEEeC--CCCchHHHHHHHHHhCCeeE
Q 015208 335 VANPVELSGK--GRPLVFHDITLALKMLDICI 364 (411)
Q Consensus 335 ~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I 364 (411)
..|.+||+++ |||-- ....+-+-.|-.|
T Consensus 73 ~~Y~LEVSSPGldRpL~--~~~~f~r~~G~~V 102 (153)
T COG0779 73 GAYFLEVSSPGLDRPLK--TAEHFARFIGEKV 102 (153)
T ss_pred ccEEEEeeCCCCCCCcC--CHHHHHHhcCcEE
Confidence 3568888876 67743 3333333355443
No 347
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=24.84 E-value=3e+02 Score=31.73 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=40.9
Q ss_pred EecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCc
Q 015208 115 SCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL 162 (411)
Q Consensus 115 ~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~ 162 (411)
..+...|+|+.++.++..+|+.+..+.+-+..+|..+-+|||+...+.
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 345566999999999999999999999998668888889999876543
No 348
>PRK14634 hypothetical protein; Provisional
Probab=24.83 E-value=4.8e+02 Score=22.89 Aligned_cols=62 Identities=6% Similarity=-0.050 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 120 ~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
.-+...+..++..+|+.+.+..+....+++++ ..+|..++|..++=+.++.+-+.|...|+.
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 34566677888999999999998874455555 455544555445667899999999998974
No 349
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=24.50 E-value=2.2e+02 Score=21.40 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=32.2
Q ss_pred CCCchH----HHHHHHHHhCCee-EEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhccC
Q 015208 345 GRPLVF----HDITLALKMLDIC-IFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW 410 (411)
Q Consensus 345 DRpGil----~dvt~~l~~~gi~-I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~~ 410 (411)
-|||++ ..+.+.|.++|++ +.++.+. +. |++ .| .+.+ -++.+++.|..|
T Consensus 9 ~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~------k~-----~~l---~~--~~~~-~~~~i~~~lL~N 62 (73)
T PRK06423 9 YKPGVEDPEALTILKNLNILGYNGIKGVSIS------KV-----YYF---DA--DSYN-EVDEIAGKILTN 62 (73)
T ss_pred ECCCCcChHHHHHHHHHHHcCCCCcceEEEE------EE-----EEE---ec--CCHH-HHHHHHHHhcCC
Confidence 367776 4488889999987 7776666 33 455 23 4455 477777776654
No 350
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=24.37 E-value=1.7e+02 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCC
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 394 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~ 394 (411)
=+.++..-+.++|+.+..--.. ...+ ...||+.||+|..+
T Consensus 66 dv~~~~~~l~~~G~~~~~~~~~--~~~g----~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 66 DVDALYERLKELGAEIVTEPRD--DPWG----QRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEE--ETTS----EEEEEEE-TTS-EE
T ss_pred CHHHHHHHHHHCCCeEeeCCEE--cCCC----eEEEEEECCCCCEE
Confidence 3677788889999997653222 1111 34599999999753
No 351
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=24.01 E-value=1.3e+02 Score=30.62 Aligned_cols=116 Identities=15% Similarity=0.229 Sum_probs=62.9
Q ss_pred CcEEEEecCCCCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHH-H
Q 015208 231 NVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ-N 306 (411)
Q Consensus 231 ~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~-~ 306 (411)
-|.|.+.+ +-+++.|.+. -..|+|+.|..+|.++|+.|. -|++ ---.+. .-+.+ .++.+.+.+ .
T Consensus 384 ~TsI~lK~----nv~mldI~Str~l~q~GFLAkvFti~ek~~isVD--vvaT--SEV~iS--ltL~~--~~~~sreliq~ 451 (559)
T KOG0456|consen 384 LTSIVLKR----NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVD--VVAT--SEVSIS--LTLDP--SKLDSRELIQG 451 (559)
T ss_pred ceEEEEec----cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEE--EEEe--eeEEEE--EecCh--hhhhhHHHHHh
Confidence 45555433 4577777664 457999999999999999987 4442 111111 11111 122211111 2
Q ss_pred HHHHHHHHHHcCCceE-EEeccCCCccccccceEEEEeC--CCCchHHHHHHHHHhCCeeEEEEE
Q 015208 307 GLSSRLWMELLQPLRV-TVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAE 368 (411)
Q Consensus 307 ~l~~~L~~~l~~~~~~-~i~~~~~~~~~~~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I~~~~ 368 (411)
.|.++. +.|.+ +.+ .+. ++.. -+++.|+ .-.||+...=++|+++||||+..+
T Consensus 452 ~l~~a~-eeL~k-i~~vdll-~~~s-------IiSLiGnvq~ss~i~~rmF~~l~e~giNvqMIS 506 (559)
T KOG0456|consen 452 ELDQAV-EELEK-IAVVDLL-KGRS-------IISLIGNVQNSSGILERMFCVLAENGINVQMIS 506 (559)
T ss_pred hHHHHH-HHHHH-hhhhhhh-ccch-------HHhhhhhhhhhhHHHHHHHHHHHhcCcceeeec
Confidence 222221 11211 111 111 1111 3445555 557999999999999999998765
No 352
>PRK04998 hypothetical protein; Provisional
Probab=23.92 E-value=2.3e+02 Score=22.22 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCCeE--EEEEEEEcCcEEEEEEEEEc
Q 015208 20 PCVITVNCPDKTGLGCDLCRIILFFGLSI--VRGDVSTDGKWCYIVFWVIG 68 (411)
Q Consensus 20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI--~~a~i~tdg~~~~d~f~V~~ 68 (411)
.+.+.|.+++.+++...|.+++..+.-.- ...+-|+.|.+..-...+.-
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v 65 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITA 65 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEE
Confidence 57899999999999999999998873321 23444668886655555554
No 353
>PF09876 DUF2103: Predicted metal-binding protein (DUF2103); InterPro: IPR018664 This family of various putative metal binding prokaryotic proteins has no known function.
Probab=23.83 E-value=1.7e+02 Score=24.02 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=36.8
Q ss_pred CcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHH
Q 015208 231 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS 310 (411)
Q Consensus 231 ~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~ 310 (411)
|..|......+.....+.+.-+|+-| ++.+ +. ..|..++.+|+|+. +.+.+..+.+.+
T Consensus 40 PG~I~~~~~~~~~gl~lkvt~~~~~G------------n~Kl----la--r~G~SvQEvfVVT~----~~~~e~~~~i~~ 97 (103)
T PF09876_consen 40 PGVISRSGGRSSGGLRLKVTRPTRGG------------NFKL----LA--RSGSSVQEVFVVTT----LSDRELGERIIE 97 (103)
T ss_pred cccEEcCCCCCCCCeEEEEEEecCCC------------cEEE----EE--ecCCeeEEEEEEee----CCcHHHHHHHHH
Confidence 33344333332334666777777665 1222 22 47899999999974 344456677777
Q ss_pred HHHHH
Q 015208 311 RLWME 315 (411)
Q Consensus 311 ~L~~~ 315 (411)
.|.++
T Consensus 98 ~Ln~~ 102 (103)
T PF09876_consen 98 ELNEA 102 (103)
T ss_pred HHHhh
Confidence 76543
No 354
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=23.67 E-value=2.8e+02 Score=23.31 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeC---------------------CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208 122 LLYDVTAVLCELELTIEKVKISTT---------------------PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 178 (411)
Q Consensus 122 Ll~~i~~~L~~~glnI~~A~I~T~---------------------~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~ 178 (411)
+...++..|...|++|......++ ++..-.+-|.+.+++|.+++++..++|++.+.+
T Consensus 56 ~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 56 LAKALAAGLRANGVDVIDIGLVPTPALSFAIRQLNADGGIMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHHTESEEEEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccccCcHHhhhhccccccceeeEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 677788889999999988876544 111123446666777777777766777666544
No 355
>PRK14633 hypothetical protein; Provisional
Probab=23.24 E-value=5e+02 Score=22.59 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc---cHHHHHHHHHhhCCCCCCcceeeeecccccCCCCCce
Q 015208 33 LGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT---RWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDV 109 (411)
Q Consensus 33 l~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~---~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (411)
+...+..++..+|+.+.+......|.+.+-+| +..+.|- +.+.+-+.|...|+.. +.-.+.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~lddC~~vSr~i~~~LD~~---------------d~i~~~ 69 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSVDDCQIVSKEISAVFDVE---------------DPVSGK 69 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHhccC---------------cCCCCC
Confidence 45667888999999999999987666665555 4445553 4556655666665321 122356
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceE
Q 015208 110 FLLKLSCYDRKGLLYDVTAVLCELELTI 137 (411)
Q Consensus 110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI 137 (411)
|.++|.+|.-.--|...-..-...|-.|
T Consensus 70 Y~LEVSSPGldRpL~~~~~f~r~~G~~v 97 (150)
T PRK14633 70 YILEVSSPGMNRQIFNIIQAQALVGFNV 97 (150)
T ss_pred eEEEEeCCCCCCCCCCHHHHHHhCCCeE
Confidence 7888887654444666666666656554
No 356
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=22.89 E-value=3.2e+02 Score=31.49 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCcEEEEEecCC-CCCcEEEEE---EcCCCCChHHHHHHHHHhCCCeEEEEEE--EEcCcEEEEEEEEEcCCC
Q 015208 5 YDDVVIISQSDK-EGDPCVITV---NCPDKTGLGCDLCRIILFFGLSIVRGDV--STDGKWCYIVFWVIGDSQ 71 (411)
Q Consensus 5 ~~~~v~~~~~~~-~~~~~~V~v---~~~Dr~Gl~~~i~~~L~~~glnI~~a~i--~tdg~~~~d~f~V~~~~g 71 (411)
..++|+-....+ ......+.+ -.+...|+|+.++.++..+||.+..+++ +++|. .+-.|+|....+
T Consensus 214 ~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv-~i~s~yv~~~~~ 285 (1002)
T PTZ00324 214 SVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGV-QVYTFFIRGLTA 285 (1002)
T ss_pred cCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCc-EEEEEEEecCCC
Confidence 345555554333 223334444 3455669999999999999999999999 45887 667899997654
No 357
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=22.71 E-value=5.1e+02 Score=22.49 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCC---ccHHHHHHHHHhhCCCCCCcceeeeecccccCCCCCce
Q 015208 33 LGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQ---TRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDV 109 (411)
Q Consensus 33 l~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g---~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (411)
+-..+..++..+|+.+.+..+...|..-.....|..+.| .+.+.+-+.+...|+. .+.-.+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~---------------~d~i~~~ 73 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV---------------EDPIPGA 73 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc---------------ccCCCCC
Q ss_pred EEEEEEec
Q 015208 110 FLLKLSCY 117 (411)
Q Consensus 110 t~i~v~~~ 117 (411)
|.++|.+|
T Consensus 74 Y~LEVSSP 81 (154)
T PRK00092 74 YTLEVSSP 81 (154)
T ss_pred eEEEEeCC
No 358
>PRK14637 hypothetical protein; Provisional
Probab=21.00 E-value=4.2e+02 Score=23.13 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhccC
Q 015208 348 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW 410 (411)
Q Consensus 348 Gil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~~ 410 (411)
|.-..+..++.++|+-+.+++.. ..|+.. +-+.||..+.| ++-+ -|+.+.+.|+..
T Consensus 9 ~~~~~v~p~~~~~g~eLvdve~~--~~~~~~--~lrV~ID~~~g--V~id-dC~~vSr~Is~~ 64 (151)
T PRK14637 9 GYFSECEPVVEGLGCKLVDLSRR--VQQAQG--RVRAVIYSAGG--VGLD-DCARVHRILVPR 64 (151)
T ss_pred cHHHHHHHHHHhcCCEEEEEEEE--ecCCCc--EEEEEEECCCC--CCHH-HHHHHHHHHHHH
No 359
>PRK14630 hypothetical protein; Provisional
Probab=20.79 E-value=4.4e+02 Score=22.80 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhc
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 408 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~ 408 (411)
|-.-+..++.++|+.+..++.. ..|+.. +-+.|+..+.| ++-+ -|+.+.++|+
T Consensus 10 i~~li~~~~~~~G~eLvdve~~--~~~~~~--~lrV~Id~~~g--V~id-DC~~vSr~i~ 62 (143)
T PRK14630 10 VYNLIKNVTDRLGIEIIEINTF--RNRNEG--KIQIVLYKKDS--FGVD-TLCDLHKMIL 62 (143)
T ss_pred HHHHHHHHHHHcCCEEEEEEEE--ecCCCc--EEEEEEECCCC--CCHH-HHHHHHHHHH
Confidence 4455777899999999999987 555544 56788876655 6655 5777777764
No 360
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.66 E-value=1e+02 Score=24.68 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
-|.++...|+..|+.+....... ..|. ...||+.||+|..+.
T Consensus 73 dv~~~~~~l~~~g~~~~~~~~~~-~~~~----~~~~~~~DPdG~~ve 114 (121)
T cd07266 73 DLDKAEAFFQELGLPTEWVEAGE-EPGQ----GRALRVEDPLGFPIE 114 (121)
T ss_pred HHHHHHHHHHHcCCCcccccCCc-CCCC----ccEEEEECCCCCEEE
Confidence 46667888888998885542210 1111 235899999998764
No 361
>PRK14640 hypothetical protein; Provisional
Probab=20.65 E-value=4.3e+02 Score=23.04 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208 351 HDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 409 (411)
Q Consensus 351 ~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~ 409 (411)
.-+..++.++|+-+..++.. ..|+.. +-+.|+..++| ++-+ -|+.+.++|+.
T Consensus 10 ~li~p~~~~~G~el~dve~~--~~~~~~--~lrV~ID~~~g--v~ld-dC~~vSr~is~ 61 (152)
T PRK14640 10 DLLEAPVVALGFELWGIEFI--RAGKHS--TLRVYIDGENG--VSVE-NCAEVSHQVGA 61 (152)
T ss_pred HHHHHHHHhcCCEEEEEEEE--ecCCCc--EEEEEEECCCC--CCHH-HHHHHHHHHHH
Confidence 34667788999999999987 555544 56788876666 6655 47777776643
No 362
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=20.59 E-value=98 Score=24.88 Aligned_cols=41 Identities=15% Similarity=-0.059 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 348 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 348 Gil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
-=|.+....|...|+.+...... ..++ ..||+.||+|..+.
T Consensus 74 ~~v~~~~~~l~~~G~~~~~~~~~--~~~~-----~~~~~~DPdG~~iE 114 (121)
T cd09013 74 EALERRVAALEASGLGIGWIEGD--PGHG-----KAYRFRSPDGHPME 114 (121)
T ss_pred HHHHHHHHHHHHcCCccccccCC--CCCc-----ceEEEECCCCCEEE
Confidence 34556668888899987432222 1122 24799999998654
No 363
>PRK06724 hypothetical protein; Provisional
Probab=20.33 E-value=1.4e+02 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC
Q 015208 349 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 395 (411)
Q Consensus 349 il~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~ 395 (411)
=|.++.+.|.++|+.+...-..++.. +.. .+.+|+.||+|..+.
T Consensus 76 dvd~~~~~l~~~G~~~~~~p~~~~~~-~~g--~~~~~f~DPdG~~iE 119 (128)
T PRK06724 76 VVDEVAEFLSSTKIKIIRGPMEMNHY-SEG--YYTIDFYDPNGFIIE 119 (128)
T ss_pred HHHHHHHHHHHCCCEEecCCcccCCC-CCC--EEEEEEECCCCCEEE
Confidence 46889999999999886543331111 111 456899999999765
No 364
>PRK14636 hypothetical protein; Provisional
Probab=20.05 E-value=6.4e+02 Score=22.62 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182 (411)
Q Consensus 120 ~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~ 182 (411)
+-+...+..++..+|+.+.+..+....+.+++ .++|..+.+..++=+.++.+-+.|...|..
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~l-rV~ID~~~~ggV~lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTL-QIMAERPDTRQLVIEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEE-EEEEECCCCCCcCHHHHHHHHHHHHHHhcc
Confidence 34566778889999999999998773344444 455544433335667899999999999974
Done!