Query 015209
Match_columns 411
No_of_seqs 236 out of 1582
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-110 5E-115 855.0 33.1 362 44-407 29-414 (524)
2 PLN02849 beta-glucosidase 100.0 3E-101 7E-106 804.8 35.4 357 45-407 23-392 (503)
3 PLN02814 beta-glucosidase 100.0 5E-101 1E-105 803.4 34.3 354 47-407 23-394 (504)
4 PLN02998 beta-glucosidase 100.0 6E-101 1E-105 801.7 34.7 360 44-407 23-399 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 8.3E-98 2E-102 757.5 31.5 342 50-408 2-363 (460)
6 PRK13511 6-phospho-beta-galact 100.0 5.8E-96 1E-100 762.1 33.2 337 50-407 3-375 (469)
7 PRK09593 arb 6-phospho-beta-gl 100.0 9.2E-96 2E-100 761.0 33.1 340 50-407 4-375 (478)
8 TIGR01233 lacG 6-phospho-beta- 100.0 2.6E-95 6E-100 756.1 33.4 336 51-407 3-374 (467)
9 PF00232 Glyco_hydro_1: Glycos 100.0 8.2E-96 2E-100 759.7 25.5 341 50-407 3-362 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 8.4E-95 1.8E-99 753.5 32.6 339 51-407 3-374 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 4.4E-94 9.6E-99 747.8 34.1 342 48-407 2-375 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2.2E-93 4.7E-98 741.6 33.3 339 51-407 3-372 (474)
13 TIGR03356 BGL beta-galactosida 100.0 2.9E-92 6.3E-97 726.9 32.9 338 52-407 1-344 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 3.1E-12 6.7E-17 130.3 9.0 109 105-217 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.2 2.3E-11 4.9E-16 117.2 9.3 110 106-218 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3.1E-08 6.7E-13 95.9 8.8 83 126-216 1-85 (254)
17 COG1874 LacA Beta-galactosidas 98.5 3.5E-07 7.5E-12 99.0 8.1 107 106-216 31-163 (673)
18 COG2730 BglC Endoglucanase [Ca 98.0 1.8E-05 4E-10 81.9 8.9 109 108-216 76-193 (407)
19 PF07745 Glyco_hydro_53: Glyco 98.0 0.00016 3.5E-09 72.8 14.8 141 108-283 27-177 (332)
20 PF01229 Glyco_hydro_39: Glyco 97.8 5.9E-05 1.3E-09 79.8 8.8 106 107-217 41-168 (486)
21 PF00331 Glyco_hydro_10: Glyco 97.7 0.00017 3.6E-09 72.4 9.2 88 125-217 43-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.4 0.00042 9.2E-09 69.6 8.3 109 106-215 25-151 (319)
23 PF01373 Glyco_hydro_14: Glyco 97.0 0.00094 2E-08 68.5 5.2 105 104-214 15-150 (402)
24 PLN02161 beta-amylase 97.0 0.0039 8.4E-08 65.4 9.5 111 101-216 113-262 (531)
25 PLN02803 beta-amylase 96.9 0.0034 7.4E-08 66.1 9.1 107 104-215 106-251 (548)
26 PLN00197 beta-amylase; Provisi 96.9 0.0038 8.2E-08 66.0 9.0 108 104-216 126-272 (573)
27 PLN03059 beta-galactosidase; P 96.8 0.0048 1.1E-07 68.6 9.5 107 106-214 60-187 (840)
28 PLN02801 beta-amylase 96.8 0.0078 1.7E-07 63.2 9.8 99 104-205 36-173 (517)
29 PF14587 Glyco_hydr_30_2: O-Gl 96.6 0.014 3.1E-07 59.7 10.5 101 115-216 57-185 (384)
30 PLN02905 beta-amylase 96.5 0.013 2.9E-07 62.8 9.7 101 101-204 282-421 (702)
31 COG3693 XynA Beta-1,4-xylanase 96.5 0.0071 1.5E-07 60.2 6.9 86 125-216 66-153 (345)
32 PF02836 Glyco_hydro_2_C: Glyc 96.5 0.018 4E-07 56.8 10.0 92 104-214 35-132 (298)
33 PLN02705 beta-amylase 96.4 0.016 3.6E-07 61.9 9.6 99 103-204 266-403 (681)
34 PF13204 DUF4038: Protein of u 96.2 0.03 6.4E-07 55.5 9.9 101 109-214 34-156 (289)
35 PRK10150 beta-D-glucuronidase; 95.6 0.05 1.1E-06 59.2 9.4 94 105-215 313-419 (604)
36 PF14488 DUF4434: Domain of un 94.8 0.19 4.2E-06 45.8 9.1 101 106-215 21-131 (166)
37 COG3867 Arabinogalactan endo-1 94.5 2.6 5.6E-05 42.1 16.5 134 51-215 34-182 (403)
38 KOG0496 Beta-galactosidase [Ca 93.3 0.39 8.6E-06 52.1 9.1 108 106-215 50-176 (649)
39 PRK09525 lacZ beta-D-galactosi 93.0 0.43 9.3E-06 55.3 9.5 91 103-215 369-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 91.4 0.86 1.9E-05 52.9 9.5 90 104-215 354-451 (1021)
41 COG3250 LacZ Beta-galactosidas 90.6 1.6 3.6E-05 49.2 10.4 91 100-215 316-408 (808)
42 COG3664 XynB Beta-xylosidase [ 90.2 0.41 8.9E-06 49.3 4.8 99 115-218 15-118 (428)
43 COG3934 Endo-beta-mannanase [C 85.0 0.48 1E-05 49.8 1.7 108 107-216 28-150 (587)
44 PF07488 Glyco_hydro_67M: Glyc 84.4 8.1 0.00018 38.7 9.9 87 104-203 56-150 (328)
45 PF03198 Glyco_hydro_72: Gluca 84.0 4.4 9.5E-05 40.7 7.9 88 106-213 54-144 (314)
46 smart00642 Aamy Alpha-amylase 80.0 5.1 0.00011 36.4 6.3 62 104-165 18-90 (166)
47 PF02638 DUF187: Glycosyl hydr 76.4 13 0.00028 37.3 8.6 98 105-202 19-154 (311)
48 PF14871 GHL6: Hypothetical gl 76.2 12 0.00026 32.8 7.3 70 109-181 4-79 (132)
49 PLN02361 alpha-amylase 72.6 8.9 0.00019 39.9 6.5 64 102-165 26-96 (401)
50 PLN00196 alpha-amylase; Provis 70.6 8.8 0.00019 40.3 5.9 62 104-165 43-112 (428)
51 COG0821 gcpE 1-hydroxy-2-methy 70.3 35 0.00076 34.7 9.7 88 99-200 78-165 (361)
52 PF00128 Alpha-amylase: Alpha 68.1 9.7 0.00021 36.4 5.3 57 107-165 6-72 (316)
53 PF12876 Cellulase-like: Sugar 67.8 2.9 6.3E-05 33.7 1.4 19 197-215 1-22 (88)
54 TIGR02402 trehalose_TreZ malto 66.4 25 0.00055 38.0 8.5 92 104-202 110-237 (542)
55 cd06543 GH18_PF-ChiA-like PF-C 66.2 29 0.00063 34.6 8.3 78 112-202 19-104 (294)
56 KOG2233 Alpha-N-acetylglucosam 65.8 32 0.0007 36.7 8.7 112 103-214 76-248 (666)
57 PF10566 Glyco_hydro_97: Glyco 65.4 35 0.00076 33.7 8.6 101 100-200 27-149 (273)
58 PRK12313 glycogen branching en 64.8 34 0.00074 37.6 9.4 93 104-202 169-302 (633)
59 PRK12581 oxaloacetate decarbox 64.6 22 0.00049 37.8 7.5 56 103-171 98-158 (468)
60 TIGR01210 conserved hypothetic 64.0 20 0.00044 35.8 6.8 108 108-229 117-229 (313)
61 PRK05402 glycogen branching en 63.7 39 0.00084 38.0 9.6 93 104-202 264-397 (726)
62 PRK14041 oxaloacetate decarbox 63.5 25 0.00055 37.4 7.7 97 103-216 88-209 (467)
63 cd07945 DRE_TIM_CMS Leptospira 63.2 22 0.00047 35.1 6.8 82 107-199 76-158 (280)
64 PRK05799 coproporphyrinogen II 62.8 16 0.00034 37.3 5.9 95 107-218 98-196 (374)
65 cd07939 DRE_TIM_NifV Streptomy 61.4 13 0.00029 35.9 4.9 58 108-165 72-130 (259)
66 cd03174 DRE_TIM_metallolyase D 61.1 25 0.00054 33.5 6.7 60 108-167 77-137 (265)
67 PRK09441 cytoplasmic alpha-amy 61.0 15 0.00033 38.9 5.6 64 102-165 19-101 (479)
68 TIGR02403 trehalose_treC alpha 58.5 16 0.00034 39.6 5.2 60 104-165 26-95 (543)
69 PRK12858 tagatose 1,6-diphosph 58.0 41 0.00088 34.3 7.8 52 111-165 112-163 (340)
70 cd06593 GH31_xylosidase_YicI Y 57.9 71 0.0015 31.5 9.5 105 107-214 26-160 (308)
71 PRK14040 oxaloacetate decarbox 57.8 34 0.00073 37.6 7.6 98 103-217 90-212 (593)
72 PRK04161 tagatose 1,6-diphosph 57.6 50 0.0011 33.5 8.2 60 109-171 111-170 (329)
73 cd02932 OYE_YqiM_FMN Old yello 57.5 2.1E+02 0.0046 28.6 14.3 39 130-168 62-100 (336)
74 PRK12399 tagatose 1,6-diphosph 57.4 50 0.0011 33.4 8.1 58 111-171 111-168 (324)
75 PLN02784 alpha-amylase 57.0 26 0.00057 40.0 6.7 64 102-165 518-588 (894)
76 PRK10933 trehalose-6-phosphate 56.1 19 0.0004 39.1 5.3 60 104-165 32-101 (551)
77 cd07948 DRE_TIM_HCS Saccharomy 55.6 22 0.00047 34.8 5.2 59 108-166 74-133 (262)
78 cd07943 DRE_TIM_HOA 4-hydroxy- 53.8 1E+02 0.0023 29.7 9.7 80 108-203 88-185 (263)
79 TIGR02090 LEU1_arch isopropylm 53.3 21 0.00046 36.5 5.0 60 107-166 73-133 (363)
80 TIGR00612 ispG_gcpE 1-hydroxy- 53.1 95 0.0021 31.7 9.3 88 98-199 75-162 (346)
81 PRK00366 ispG 4-hydroxy-3-meth 53.0 89 0.0019 32.1 9.1 74 115-199 98-171 (360)
82 TIGR03217 4OH_2_O_val_ald 4-hy 53.0 1.3E+02 0.0028 30.5 10.5 92 108-215 90-200 (333)
83 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.8 77 0.0017 31.0 8.6 46 107-165 93-138 (275)
84 TIGR00433 bioB biotin syntheta 52.4 41 0.00088 32.8 6.7 56 107-165 122-178 (296)
85 PRK14706 glycogen branching en 51.8 55 0.0012 36.3 8.1 90 112-202 175-299 (639)
86 TIGR01515 branching_enzym alph 51.5 92 0.002 34.2 9.8 99 104-202 155-288 (613)
87 PF05089 NAGLU: Alpha-N-acetyl 51.4 38 0.00082 34.4 6.2 109 104-214 18-184 (333)
88 PRK09505 malS alpha-amylase; R 51.3 31 0.00067 38.5 6.1 59 107-165 232-312 (683)
89 cd06603 GH31_GANC_GANAB_alpha 50.9 95 0.0021 31.3 9.2 71 148-218 67-167 (339)
90 PRK05692 hydroxymethylglutaryl 50.9 55 0.0012 32.4 7.3 85 106-199 80-166 (287)
91 TIGR02456 treS_nterm trehalose 50.5 23 0.00051 38.1 5.0 61 105-165 28-96 (539)
92 TIGR02660 nifV_homocitr homoci 50.5 52 0.0011 33.6 7.3 59 108-166 75-134 (365)
93 PRK14705 glycogen branching en 50.1 93 0.002 37.2 10.0 91 111-202 772-897 (1224)
94 PLN02746 hydroxymethylglutaryl 50.1 51 0.0011 33.7 7.0 60 107-166 123-183 (347)
95 COG1523 PulA Type II secretory 49.9 37 0.0008 38.0 6.4 55 111-165 206-285 (697)
96 cd06602 GH31_MGAM_SI_GAA This 49.5 87 0.0019 31.7 8.6 68 148-216 69-168 (339)
97 cd07944 DRE_TIM_HOA_like 4-hyd 49.5 62 0.0013 31.6 7.4 47 108-167 85-131 (266)
98 PRK12331 oxaloacetate decarbox 49.3 66 0.0014 34.1 7.9 92 108-216 99-210 (448)
99 cd06592 GH31_glucosidase_KIAA1 49.0 96 0.0021 30.8 8.8 106 107-215 32-167 (303)
100 cd06598 GH31_transferase_CtsZ 48.6 1.2E+02 0.0027 30.1 9.6 107 108-217 27-168 (317)
101 PRK11858 aksA trans-homoaconit 48.6 62 0.0013 33.3 7.5 59 108-166 78-137 (378)
102 PRK10785 maltodextrin glucosid 47.7 36 0.00078 37.3 5.9 55 105-165 179-246 (598)
103 cd06601 GH31_lyase_GLase GLase 47.2 85 0.0018 31.8 8.1 71 148-220 67-140 (332)
104 TIGR01232 lacD tagatose 1,6-di 47.2 97 0.0021 31.4 8.3 59 110-171 111-169 (325)
105 cd06591 GH31_xylosidase_XylS X 46.9 1.4E+02 0.003 29.8 9.6 78 140-218 61-164 (319)
106 cd06600 GH31_MGAM-like This fa 46.3 1.5E+02 0.0033 29.6 9.8 70 147-217 66-164 (317)
107 PRK14511 maltooligosyl trehalo 46.1 37 0.00081 38.9 5.8 55 105-165 20-89 (879)
108 PF03659 Glyco_hydro_71: Glyco 45.5 90 0.002 32.4 8.1 50 106-165 18-67 (386)
109 cd07941 DRE_TIM_LeuA3 Desulfob 45.4 1.7E+02 0.0038 28.5 9.8 61 108-168 81-142 (273)
110 COG3589 Uncharacterized conser 45.4 93 0.002 31.8 7.8 71 109-193 20-90 (360)
111 COG1501 Alpha-glucosidases, fa 44.4 90 0.002 35.4 8.5 100 116-220 293-422 (772)
112 PLN02447 1,4-alpha-glucan-bran 44.4 43 0.00094 37.8 5.9 94 103-202 248-383 (758)
113 PRK09058 coproporphyrinogen II 42.7 83 0.0018 33.1 7.5 106 107-228 162-270 (449)
114 cd04733 OYE_like_2_FMN Old yel 42.5 3.7E+02 0.0079 27.0 14.1 39 129-167 63-104 (338)
115 PRK03705 glycogen debranching 41.3 63 0.0014 35.9 6.6 91 111-202 185-329 (658)
116 TIGR01108 oadA oxaloacetate de 41.1 1E+02 0.0022 33.8 8.1 94 107-217 93-206 (582)
117 TIGR00539 hemN_rel putative ox 41.0 62 0.0013 32.8 6.1 92 108-215 100-194 (360)
118 TIGR02401 trehalose_TreY malto 40.3 51 0.0011 37.6 5.7 55 105-165 16-85 (825)
119 cd07938 DRE_TIM_HMGL 3-hydroxy 39.8 1.2E+02 0.0026 29.8 7.6 83 108-199 76-160 (274)
120 PRK07379 coproporphyrinogen II 39.3 70 0.0015 33.1 6.3 103 107-226 114-220 (400)
121 COG3534 AbfA Alpha-L-arabinofu 38.9 1.6E+02 0.0035 31.3 8.6 87 107-214 50-174 (501)
122 cd02803 OYE_like_FMN_family Ol 38.8 2.1E+02 0.0046 28.2 9.5 148 132-304 64-238 (327)
123 PRK12568 glycogen branching en 38.7 44 0.00096 37.6 4.9 94 104-202 268-401 (730)
124 TIGR03234 OH-pyruv-isom hydrox 38.3 96 0.0021 29.4 6.7 65 104-171 83-150 (254)
125 PF02065 Melibiase: Melibiase; 38.1 1.5E+02 0.0033 30.9 8.4 95 107-206 60-188 (394)
126 cd07940 DRE_TIM_IPMS 2-isoprop 38.0 96 0.0021 30.1 6.7 58 108-165 72-134 (268)
127 cd06599 GH31_glycosidase_Aec37 37.6 2.7E+02 0.0059 27.7 10.0 69 147-216 75-171 (317)
128 PRK05628 coproporphyrinogen II 37.3 82 0.0018 32.1 6.4 96 107-219 107-206 (375)
129 PF03511 Fanconi_A: Fanconi an 37.2 24 0.00052 27.0 1.8 38 129-168 19-56 (64)
130 PRK14510 putative bifunctional 37.0 42 0.00092 40.0 4.7 57 109-165 191-267 (1221)
131 PRK08255 salicylyl-CoA 5-hydro 36.7 6.7E+02 0.014 28.3 15.5 165 114-303 440-647 (765)
132 cd07947 DRE_TIM_Re_CS Clostrid 36.7 82 0.0018 31.1 6.0 59 107-165 76-135 (279)
133 TIGR03471 HpnJ hopanoid biosyn 35.6 1.2E+02 0.0025 32.1 7.3 60 108-171 287-348 (472)
134 cd02742 GH20_hexosaminidase Be 35.6 1.3E+02 0.0028 29.9 7.3 62 107-174 18-98 (303)
135 COG0366 AmyA Glycosidases [Car 35.5 47 0.001 34.5 4.4 51 109-165 33-97 (505)
136 cd06542 GH18_EndoS-like Endo-b 34.7 1.4E+02 0.0031 28.3 7.3 55 144-202 50-104 (255)
137 PLN02389 biotin synthase 34.4 1.2E+02 0.0026 31.3 7.0 58 106-166 176-234 (379)
138 PTZ00445 p36-lilke protein; Pr 33.8 83 0.0018 30.1 5.2 56 111-166 35-99 (219)
139 COG5016 Pyruvate/oxaloacetate 33.7 1.6E+02 0.0036 30.9 7.6 52 103-167 91-147 (472)
140 TIGR02629 L_rham_iso_rhiz L-rh 33.2 1.8E+02 0.004 30.5 8.0 88 108-209 73-171 (412)
141 smart00729 Elp3 Elongator prot 33.0 2.3E+02 0.0051 24.8 8.0 58 105-165 97-157 (216)
142 KOG2836 Protein tyrosine phosp 32.8 3.6E+02 0.0079 24.1 8.6 96 146-271 29-138 (173)
143 PF00682 HMGL-like: HMGL-like 32.7 3E+02 0.0065 25.8 9.0 106 108-216 66-194 (237)
144 PRK13398 3-deoxy-7-phosphohept 32.6 1.7E+02 0.0036 28.7 7.4 72 101-175 37-108 (266)
145 PF04914 DltD_C: DltD C-termin 32.5 1.6E+02 0.0035 25.8 6.5 54 147-204 38-91 (130)
146 PF04551 GcpE: GcpE protein; 32.5 1.1E+02 0.0024 31.4 6.2 85 99-197 78-169 (359)
147 TIGR03581 EF_0839 conserved hy 32.5 1.6E+02 0.0034 28.4 6.7 76 103-190 133-230 (236)
148 cd06545 GH18_3CO4_chitinase Th 31.9 1.4E+02 0.003 28.5 6.7 74 124-202 26-99 (253)
149 cd06604 GH31_glucosidase_II_Ma 30.9 3E+02 0.0064 27.7 9.1 67 148-217 67-163 (339)
150 KOG1065 Maltase glucoamylase a 30.8 2.2E+02 0.0047 32.5 8.5 105 109-219 315-454 (805)
151 cd06565 GH20_GcnA-like Glycosy 30.7 2E+02 0.0043 28.6 7.7 62 107-175 19-87 (301)
152 PRK12677 xylose isomerase; Pro 30.2 3.8E+02 0.0082 27.7 9.9 90 107-203 33-128 (384)
153 cd06525 GH25_Lyc-like Lyc mura 30.1 3.4E+02 0.0073 24.6 8.6 25 184-208 99-123 (184)
154 TIGR02635 RhaI_grampos L-rhamn 30.0 2.5E+02 0.0054 29.1 8.4 84 108-208 43-136 (378)
155 PLN02960 alpha-amylase 30.0 96 0.0021 35.7 5.7 94 103-202 414-549 (897)
156 TIGR01211 ELP3 histone acetylt 29.7 2.1E+02 0.0045 31.1 8.0 106 108-230 206-317 (522)
157 PRK07094 biotin synthase; Prov 28.9 1E+02 0.0022 30.5 5.4 57 106-165 127-185 (323)
158 cd03130 GATase1_CobB Type 1 gl 28.8 2.5E+02 0.0053 25.9 7.5 67 98-167 6-83 (198)
159 PRK08599 coproporphyrinogen II 28.8 2.4E+02 0.0051 28.7 8.1 96 107-218 99-197 (377)
160 PRK08446 coproporphyrinogen II 28.6 2.6E+02 0.0057 28.2 8.3 92 108-215 98-192 (350)
161 PLN02229 alpha-galactosidase 28.5 1.3E+02 0.0029 31.7 6.1 57 107-163 82-146 (427)
162 PF02055 Glyco_hydro_30: O-Gly 28.0 71 0.0015 34.3 4.2 101 115-217 110-236 (496)
163 PRK08195 4-hyroxy-2-oxovalerat 27.9 1.4E+02 0.003 30.3 6.1 47 108-167 91-137 (337)
164 cd02874 GH18_CFLE_spore_hydrol 27.8 1.4E+02 0.0031 29.4 6.1 84 111-202 16-103 (313)
165 PRK12330 oxaloacetate decarbox 27.7 2.4E+02 0.0051 30.4 8.0 94 107-216 99-213 (499)
166 PRK09282 pyruvate carboxylase 27.4 2.3E+02 0.0049 31.2 8.0 93 107-216 98-210 (592)
167 PRK14507 putative bifunctional 27.3 1E+02 0.0022 38.1 5.6 59 104-168 757-832 (1693)
168 TIGR01212 radical SAM protein, 26.9 1.6E+02 0.0035 29.2 6.3 73 144-229 162-234 (302)
169 PRK08208 coproporphyrinogen II 26.7 2.1E+02 0.0046 29.8 7.4 92 107-215 140-235 (430)
170 PF01261 AP_endonuc_2: Xylose 25.0 90 0.0019 27.8 3.8 62 104-165 70-132 (213)
171 TIGR00538 hemN oxygen-independ 24.9 64 0.0014 33.9 3.2 75 107-199 150-229 (455)
172 cd06568 GH20_SpHex_like A subg 24.9 3E+02 0.0065 27.7 7.9 63 107-175 20-102 (329)
173 PRK13209 L-xylulose 5-phosphat 24.6 6.2E+02 0.013 24.1 10.0 53 107-163 23-75 (283)
174 COG5520 O-Glycosyl hydrolase [ 24.3 2.4E+02 0.0052 29.2 6.9 94 116-217 77-181 (433)
175 PRK09432 metF 5,10-methylenete 24.1 2.1E+02 0.0046 28.4 6.5 74 145-218 189-284 (296)
176 PLN02925 4-hydroxy-3-methylbut 24.1 2.3E+02 0.0049 31.9 7.1 53 147-200 212-264 (733)
177 PRK10426 alpha-glucosidase; Pr 23.8 6.4E+02 0.014 28.0 10.7 105 107-214 223-364 (635)
178 PRK06294 coproporphyrinogen II 23.7 1.9E+02 0.0041 29.5 6.3 93 108-217 103-199 (370)
179 TIGR02104 pulA_typeI pullulana 23.7 1.8E+02 0.0039 31.9 6.4 93 110-202 169-312 (605)
180 TIGR02159 PA_CoA_Oxy4 phenylac 23.6 1.2E+02 0.0025 27.1 4.1 55 99-162 36-91 (146)
181 PRK09856 fructoselysine 3-epim 23.5 1.1E+02 0.0024 29.2 4.3 61 103-164 88-148 (275)
182 PRK11572 copper homeostasis pr 23.3 2.1E+02 0.0046 27.9 6.1 43 103-154 71-113 (248)
183 PRK13347 coproporphyrinogen II 23.3 1.4E+02 0.003 31.5 5.3 76 107-199 151-230 (453)
184 PRK06256 biotin synthase; Vali 23.2 1.4E+02 0.003 29.8 5.1 57 106-165 150-207 (336)
185 TIGR02100 glgX_debranch glycog 23.2 2.2E+02 0.0047 31.9 7.0 55 111-165 190-265 (688)
186 PF12891 Glyco_hydro_44: Glyco 23.0 76 0.0016 30.8 3.0 22 145-166 24-45 (239)
187 PRK09936 hypothetical protein; 22.9 5.9E+02 0.013 25.6 9.2 61 107-175 40-100 (296)
188 cd06595 GH31_xylosidase_XylS-l 22.8 7.3E+02 0.016 24.3 10.3 76 139-217 68-163 (292)
189 TIGR00674 dapA dihydrodipicoli 22.4 3.7E+02 0.008 26.2 7.8 62 136-211 13-74 (285)
190 PRK14042 pyruvate carboxylase 22.4 3.3E+02 0.0072 30.0 8.1 97 104-217 90-211 (596)
191 cd07938 DRE_TIM_HMGL 3-hydroxy 22.1 7.4E+02 0.016 24.1 10.5 91 106-215 115-205 (274)
192 PF11790 Glyco_hydro_cc: Glyco 22.1 2.2E+02 0.0048 27.1 6.0 80 107-210 92-171 (239)
193 cd00950 DHDPS Dihydrodipicolin 22.1 3.6E+02 0.0079 26.1 7.7 60 136-209 15-74 (284)
194 PF04646 DUF604: Protein of un 22.1 38 0.00083 33.1 0.7 73 152-227 75-147 (255)
195 PRK05692 hydroxymethylglutaryl 22.1 6.9E+02 0.015 24.6 9.7 80 105-203 120-199 (287)
196 TIGR00542 hxl6Piso_put hexulos 21.4 1.8E+02 0.0038 28.0 5.3 60 104-165 93-153 (279)
197 PF11790 Glyco_hydro_cc: Glyco 21.3 68 0.0015 30.7 2.3 16 202-217 63-78 (239)
198 COG2100 Predicted Fe-S oxidore 21.2 3.2E+02 0.007 28.0 7.0 83 101-197 197-283 (414)
199 PF13812 PPR_3: Pentatricopept 20.8 59 0.0013 20.1 1.2 15 147-161 20-34 (34)
200 smart00812 Alpha_L_fucos Alpha 20.7 3.3E+02 0.0071 28.2 7.3 52 111-163 87-146 (384)
201 cd00019 AP2Ec AP endonuclease 20.7 4.6E+02 0.0099 25.1 8.0 55 105-164 10-65 (279)
202 PF04055 Radical_SAM: Radical 20.6 2.7E+02 0.0059 23.2 5.9 52 108-161 90-143 (166)
203 PF01055 Glyco_hydro_31: Glyco 20.4 3.2E+02 0.0068 28.3 7.3 108 107-217 45-184 (441)
204 cd02929 TMADH_HD_FMN Trimethyl 20.4 9.2E+02 0.02 24.6 15.2 129 137-289 75-231 (370)
205 TIGR00542 hxl6Piso_put hexulos 20.3 7.6E+02 0.016 23.6 10.0 54 106-163 17-70 (279)
206 PRK00230 orotidine 5'-phosphat 20.0 1.4E+02 0.003 28.5 4.1 62 99-173 7-68 (230)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-110 Score=854.98 Aligned_cols=362 Identities=56% Similarity=0.996 Sum_probs=335.8
Q ss_pred CCCCCcCCCCCCCeehhhcccccccCccCCCCCcCchhhhcccc-CCcccCCCCCCCCCccccccHHHHHHHHHcCCCEE
Q 015209 44 TGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKK-PGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAY 122 (411)
Q Consensus 44 ~~~~~~~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~ 122 (411)
...+.|.+||+||+||+||||||+|||+++|||++|+||+|+|. |+++.+++++|+|||+||+|+|||+|||+||+++|
T Consensus 29 ~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~af 108 (524)
T KOG0626|consen 29 TTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAF 108 (524)
T ss_pred cCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeE
Confidence 34677899999999999999999999999999999999999987 55777888899999999999999999999999999
Q ss_pred EecccccccccCCC--CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 015209 123 RFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKT 200 (411)
Q Consensus 123 RfsIsW~ri~P~~~--g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~ 200 (411)
|||||||||+|.|+ +.+|++|++||+++|++|+++||+|+|||+|||+||+|+++||||+|++++++|.+||+.||++
T Consensus 109 RFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~ 188 (524)
T KOG0626|consen 109 RFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQE 188 (524)
T ss_pred EEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999997 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcceEEecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Q 015209 201 FGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGI 280 (411)
Q Consensus 201 fgd~V~~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi 280 (411)
|||+||+|+|+|||++++..||..|..|||+|+.+..+|..|+|.+++|+|.||||+|||+||++||++++..|+|+|||
T Consensus 189 fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi 268 (524)
T KOG0626|consen 189 FGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGI 268 (524)
T ss_pred hcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeE
Confidence 99999999999999999999999999999999986679999999999999999999999999999999999899999999
Q ss_pred EecCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCCCCCCHHHHHHhcCCCcEEEeccCCCcee
Q 015209 281 LLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYM 360 (411)
Q Consensus 281 ~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYY~s~~v 360 (411)
++...|++|.+++++|++||+|+.+|..+||++|++.|+||+.|++.+++|||.||++|+++|||+.||+|||||++.++
T Consensus 269 ~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~ 348 (524)
T KOG0626|consen 269 ALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYV 348 (524)
T ss_pred EEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhh
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC-CCCCccCCCc-------------------ceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 361 YDPHLKQP-KQVGYQQDWN-------------------AGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 361 ~~~~~~~~-~~~~~~~d~~-------------------~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
++...+.. ..+...+|.+ ..++|.|++ -+|+|+|++ +||+||||-
T Consensus 349 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~Glr--~~L~yiK~~Y~np~iyItE 414 (524)
T KOG0626|consen 349 KHLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWGLR--KLLNYIKDKYGNPPIYITE 414 (524)
T ss_pred hccCCCCCCCCcccccccceeeeecccccccccccccceeeccHHHH--HHHHHHHhhcCCCcEEEEe
Confidence 87654221 1222222222 225677777 379999998 999999984
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=3.2e-101 Score=804.83 Aligned_cols=357 Identities=45% Similarity=0.844 Sum_probs=321.7
Q ss_pred CCCCcCCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEe
Q 015209 45 GGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRF 124 (411)
Q Consensus 45 ~~~~~~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~Rf 124 (411)
..+.+.+||++|+||+|||||||||++++||||+|+||.|++.++ +.++++||||||||+|||+|||+||+++|||
T Consensus 23 ~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 23 SDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 446667899999999999999999999999999999999988643 4578899999999999999999999999999
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCC
Q 015209 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (411)
Q Consensus 125 sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~ 204 (411)
||+|+||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+
T Consensus 99 SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDr 178 (503)
T PLN02849 99 SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNH 178 (503)
T ss_pred eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecC
Q 015209 205 VKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDF 284 (411)
Q Consensus 205 V~~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~ 284 (411)
|++|+|||||++++..||..|.+|||.+.....+|..+++.++.++++||+++|||+||+++|++++..|+++||++++.
T Consensus 179 Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~ 258 (503)
T PLN02849 179 VKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFA 258 (503)
T ss_pred CCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 99999999999999999999999999754211145555566789999999999999999999997654568999999999
Q ss_pred cccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCCCCCCHHHHHHhcCCCcEEEeccCCCceeeCCC
Q 015209 285 VWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPH 364 (411)
Q Consensus 285 ~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYY~s~~v~~~~ 364 (411)
.+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 259 ~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~ 338 (503)
T PLN02849 259 LGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIK 338 (503)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999997521
Q ss_pred C-C-----C-----CCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 365 L-K-----Q-----PKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 365 ~-~-----~-----~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
. . . ..++ ...+||||+++|+|++. +|++++++ ++|+||||-
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~--~L~~~~~rY~~pPi~ITE 392 (503)
T PLN02849 339 IKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMES--VLEYIKQSYGNPPVYILE 392 (503)
T ss_pred CCCCCCCCCccccccCCCCCccCCCCCeEChHHHHH--HHHHHHHhcCCCCEEEeC
Confidence 1 0 0 0011 24678999999999994 57788877 898899984
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=5.1e-101 Score=803.42 Aligned_cols=354 Identities=43% Similarity=0.813 Sum_probs=320.2
Q ss_pred CCcCCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEecc
Q 015209 47 LSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSI 126 (411)
Q Consensus 47 ~~~~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsI 126 (411)
+.+.+||++|+||+|||||||||++++||||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 55667999999999999999999999999999999999874 23468899999999999999999999999999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 015209 127 SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (411)
Q Consensus 127 sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (411)
+||||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccccchhcccccCCccCCCCCCcCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCc
Q 015209 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAF-GNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFV 285 (411)
Q Consensus 207 ~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~ 285 (411)
+|+|||||++++..||..|.. ||+++... .+|..+++.++.++++||+++|||+||+++|++++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999885 88665311 1565556667899999999999999999999987666789999999999
Q ss_pred ccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCCCCCCHHHHHHhcCCCcEEEeccCCCceeeCCCC
Q 015209 286 WYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (411)
Q Consensus 286 ~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYY~s~~v~~~~~ 365 (411)
+++|.+++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974321
Q ss_pred CC-------C---------CCCCccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 366 KQ-------P---------KQVGYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 366 ~~-------~---------~~~~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
.. . .+....++|||+++|+|++. +|++++++ ++|+||||-
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~--~L~~~~~rY~~ppI~ITE 394 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEG--ILEHIKQSYNNPPIYILE 394 (504)
T ss_pred CCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHH--HHHHHHHhcCCCCEEEEC
Confidence 00 0 01134788999999999994 57888877 888899984
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=6e-101 Score=801.74 Aligned_cols=360 Identities=50% Similarity=0.876 Sum_probs=322.0
Q ss_pred CCCCCcCCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEE
Q 015209 44 TGGLSRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYR 123 (411)
Q Consensus 44 ~~~~~~~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~R 123 (411)
+..+.+.+||++|+||+|||||||||++++||||+|+||.|++ ++. .+..++++||||||||+|||+|||+||+++||
T Consensus 23 ~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YR 100 (497)
T PLN02998 23 SLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYR 100 (497)
T ss_pred cccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEE
Confidence 3446677899999999999999999999999999999999988 342 22247889999999999999999999999999
Q ss_pred ecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCC
Q 015209 124 FSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 124 fsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd 203 (411)
|||+|+||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||++|||
T Consensus 101 fSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 101 FSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred eeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecccccchhcccccCCccCCCCCCcC-CCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEe
Q 015209 204 RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKA-FGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILL 282 (411)
Q Consensus 204 ~V~~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~-~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~ 282 (411)
+|++|+|||||++++..||..|.+|||++... ..+|..+++.++.++++||+++|||+||+++|+.++..|+++||+++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 99999999999999999999999999975421 11466666667899999999999999999999987656789999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCCCCCCHHHHHHhcCCCcEEEeccCCCceeeC
Q 015209 283 DFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYD 362 (411)
Q Consensus 283 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYY~s~~v~~ 362 (411)
+..+++|.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCC-CC--C----------C-CCccC-CCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 363 PHLK-QP--K----------Q-VGYQQ-DWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 363 ~~~~-~~--~----------~-~~~~~-d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
.+.. .. . . ....+ +++|+++|+|++. +|++++++ ++|+||||-
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~--~L~~~~~rY~~ppI~ITE 399 (497)
T PLN02998 341 NSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQ--ILLYVKETYGNPPVYILE 399 (497)
T ss_pred CCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHH--HHHHHHHHcCCCCEEEeC
Confidence 3211 00 0 0 01122 4899999999995 57888877 898899984
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-98 Score=757.48 Aligned_cols=342 Identities=37% Similarity=0.678 Sum_probs=313.0
Q ss_pred CCCCCCCeehhhcccccccCccCCCCCcCchhhhccc--cCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEeccc
Q 015209 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAK--KPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSIS 127 (411)
Q Consensus 50 ~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~--~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsIs 127 (411)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .++++..+..++.||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4699999999999999999999999999999999999 46777777889999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 015209 128 WSRIFPYGTG-KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVK 206 (411)
Q Consensus 128 W~ri~P~~~g-~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~ 206 (411)
||||+|++++ .+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999865 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcc
Q 015209 207 NWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVW 286 (411)
Q Consensus 207 ~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~ 286 (411)
+|+||||||+++..||+.|.+||+..+ .+..+||+||+++|||+||+++|+..+. .+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCc
Confidence 999999999999999999999999754 2678999999999999999999998652 39999999999
Q ss_pred cccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcC--CCCCCHHHHHHhc-CCCcEEEeccCC-CceeeC
Q 015209 287 YEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDFVGINQYT-AYYMYD 362 (411)
Q Consensus 287 ~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~--lp~ft~ed~~~ik-gs~DFiGiNYY~-s~~v~~ 362 (411)
.||.|++|+|+.||+.++++.+++|+||+++|+||.++.+.+++. +|.++++|+++|| +++||||||||+ +.+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999886 7999999999998 689999999999 566655
Q ss_pred CCCC-----------CCCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEec
Q 015209 363 PHLK-----------QPKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRICL 408 (411)
Q Consensus 363 ~~~~-----------~~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~~ 408 (411)
.+.. ..++| ...+||||+|+|+|++. +|..++++ + ++||||+-
T Consensus 308 ~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~--~l~~~~~rY~-~p~fItEN 363 (460)
T COG2723 308 EPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYD--ILEKLYERYG-IPLFITEN 363 (460)
T ss_pred cCCcCCcccccccccccCCCCCcccCCCceeChHHHHH--HHHHHHHHhC-CCeEEecC
Confidence 4421 11233 46789999999999995 46777766 8 55999973
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=5.8e-96 Score=762.12 Aligned_cols=337 Identities=34% Similarity=0.562 Sum_probs=302.2
Q ss_pred CCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEeccccc
Q 015209 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (411)
Q Consensus 50 ~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ 129 (411)
.+||++|+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 359999999999999999999999999999999999876643 6889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEE
Q 015209 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (411)
Q Consensus 130 ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~ 209 (411)
||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred ecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCccccc
Q 015209 210 TFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEP 289 (411)
Q Consensus 210 t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~~~P 289 (411)
|||||++++..||..|.+|||++.. .++.++++||+++|||+||+++|++. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996421 14689999999999999999999964 5789999999999999
Q ss_pred CC-CCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhc-----C-CCCCCHHHHHHhc---CCCcEEEeccCCCce
Q 015209 290 LT-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN-----R-LPKFTKEEVKMVK---GSIDFVGINQYTAYY 359 (411)
Q Consensus 290 ~~-~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~-----~-lp~ft~ed~~~ik---gs~DFiGiNYY~s~~ 359 (411)
.+ ++|+|++||++++++.++||+||+++|+||+.|++.+++ . .|.|+++|+++|+ +++||||||||+|.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 99 899999999999999999999999999999999987742 1 2589999999996 468999999999999
Q ss_pred eeCCCCC-----------------C------CCCCC-ccCCCcceeccCchHHHHHHHhHhhc-CC-CcEEEEe
Q 015209 360 MYDPHLK-----------------Q------PKQVG-YQQDWNAGFACKSFIYFCLLEGTKKK-TN-PLIYRIC 407 (411)
Q Consensus 360 v~~~~~~-----------------~------~~~~~-~~~d~~~~~~p~g~~y~~~l~~~~~~-~~-p~i~~~~ 407 (411)
|+..+.. . ..++. ..++|||+++|+|++. +|++++++ ++ |+||||-
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~--~l~~~~~~Y~~~~pi~ITE 375 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYD--QLMRIKKDYPNYKKIYITE 375 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHH--HHHHHHHHcCCCCCEEEec
Confidence 8752100 0 01111 4578999999999994 46777777 76 6799984
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=9.2e-96 Score=761.03 Aligned_cols=340 Identities=26% Similarity=0.462 Sum_probs=300.8
Q ss_pred CCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCccc--C----------C--CCCCCCCccccccHHHHHHHH
Q 015209 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA--N----------N--ATGDVSVDQYHRYKEDVDIMA 115 (411)
Q Consensus 50 ~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~--~----------~--~~~~~a~d~y~~y~eDi~lm~ 115 (411)
.+||++|+||+|||||||||++++||||+|+||+|++.++++. . + .++++||||||||+|||+|||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 4699999999999999999999999999999999998666541 1 1 157899999999999999999
Q ss_pred HcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHH
Q 015209 116 NLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (411)
Q Consensus 116 ~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya 194 (411)
+||+++|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 999999999999999999974 5799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcceEEecccccchhccccc-CCc-cCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015209 195 DFCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (411)
Q Consensus 195 ~~~~~~fgd~V~~w~t~NEP~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~ 272 (411)
+.||++|||+|++|+||||||+++..||. .|. +|||.. +.++.++++||+++|||+||+++|+..
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~-----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN-----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc-----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 99999999999999999999999988886 444 366532 225689999999999999999999864
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcC--CCCCCHHHHHHhc-CCCcE
Q 015209 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVK-GSIDF 349 (411)
Q Consensus 273 ~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~--lp~ft~ed~~~ik-gs~DF 349 (411)
|++|||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.++++ .|.|+++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 5789999999999999999999999999987 56899999999999999999999863 6889999999996 99999
Q ss_pred EEeccCCCceeeCCCCC-C---------CCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 350 VGINQYTAYYMYDPHLK-Q---------PKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 350 iGiNYY~s~~v~~~~~~-~---------~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
||||||++.+|+..+.. . .+++ ...++|||+++|+|++. +|++++++ ++| ||||-
T Consensus 309 lGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~--~l~~~~~~Y~~P-i~ItE 375 (478)
T PRK09593 309 ISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRI--TLNTIWDRYQKP-MFIVE 375 (478)
T ss_pred EEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHH--HHHHHHHHcCCC-EEEEc
Confidence 99999999999753310 0 0122 24789999999999994 57788777 887 99984
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.6e-95 Score=756.14 Aligned_cols=336 Identities=33% Similarity=0.558 Sum_probs=301.7
Q ss_pred CCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEecccccc
Q 015209 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSR 130 (411)
Q Consensus 51 ~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~r 130 (411)
+||++|+||+|||||||||++++||||+|+||.+++.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999999876554 267899999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEe
Q 015209 131 IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMT 210 (411)
Q Consensus 131 i~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t 210 (411)
|+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++||++||| |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998889999999999999999999999999999999999999986 9999999999999999999999998 999999
Q ss_pred cccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcccccC
Q 015209 211 FNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPL 290 (411)
Q Consensus 211 ~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~~~P~ 290 (411)
|||||+++..||..|.+|||.+.. .++.++++||+++|||+||+++|++. ++++|||+++..++||.
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 223 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPY 223 (467)
T ss_pred ecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEEC
Confidence 999999999999999999995321 14689999999999999999999973 47999999999999999
Q ss_pred C-CCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhc----C--CCCCCHHHHHHh---cCCCcEEEeccCCCcee
Q 015209 291 T-RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGN----R--LPKFTKEEVKMV---KGSIDFVGINQYTAYYM 360 (411)
Q Consensus 291 ~-~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~----~--lp~ft~ed~~~i---kgs~DFiGiNYY~s~~v 360 (411)
+ ++|+|++||++++++.++||+||+++|+||+.|++.+++ + .|.|+++|+++| ++++||||||||++.+|
T Consensus 224 ~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v 303 (467)
T TIGR01233 224 DPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWM 303 (467)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceee
Confidence 8 899999999999999999999999999999999998763 2 378999999999 58999999999999999
Q ss_pred eCCCC--------C----------C-----CCCCC-ccCCCcceeccCchHHHHHHHhHhhc-CC-CcEEEEe
Q 015209 361 YDPHL--------K----------Q-----PKQVG-YQQDWNAGFACKSFIYFCLLEGTKKK-TN-PLIYRIC 407 (411)
Q Consensus 361 ~~~~~--------~----------~-----~~~~~-~~~d~~~~~~p~g~~y~~~l~~~~~~-~~-p~i~~~~ 407 (411)
+.... . . ..++. ..++|||+++|+|++. +|++++++ ++ |+||||-
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~--~L~~~~~~Y~~~ppi~ItE 374 (467)
T TIGR01233 304 QAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYD--QIMRVKNDYPNYKKIYITE 374 (467)
T ss_pred ccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHH--HHHHHHHHcCCCCCEEEeC
Confidence 75210 0 0 01112 4588999999999994 57788777 76 7799984
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=8.2e-96 Score=759.66 Aligned_cols=341 Identities=50% Similarity=0.896 Sum_probs=307.3
Q ss_pred CCCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEeccccc
Q 015209 50 ESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWS 129 (411)
Q Consensus 50 ~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ 129 (411)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999999898888889999999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceE
Q 015209 130 RIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNW 208 (411)
Q Consensus 130 ri~P~~-~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w 208 (411)
||+|+| .|.+|++|+++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 79999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred EecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcccc
Q 015209 209 MTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYE 288 (411)
Q Consensus 209 ~t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~~~ 288 (411)
+|||||++++..||+.|.+|||..+ .++.++++||+++||++||+++|+++ ++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999544 36789999999999999999999986 479999999999999
Q ss_pred cCCCCHHHH-HHHHHHHhhhcccchhhhhcCcCCchhhhhhhcC--CCCCCHHHHHHhcCCCcEEEeccCCCceeeCCCC
Q 015209 289 PLTRSKADN-YAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHL 365 (411)
Q Consensus 289 P~~~~~~D~-~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~--lp~ft~ed~~~ikgs~DFiGiNYY~s~~v~~~~~ 365 (411)
|.+++++|+ +||++.+++.++||+||+++|+||..|++.++++ +|.||++|+++|++++||||||||++.+++..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999998776 8999999999999999999999999999999988 9999999999999999999999999999987653
Q ss_pred CCC-------------C-CCCccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 366 KQP-------------K-QVGYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 366 ~~~-------------~-~~~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
... . +....++++|+++|+|++. +|++++++ ++|+||||-
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~--~L~~l~~~Y~~~pI~ITE 362 (455)
T PF00232_consen 308 PSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRD--VLRYLKDRYGNPPIYITE 362 (455)
T ss_dssp STSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHH--HHHHHHHHHTSSEEEEEE
T ss_pred ccccccccCCccccccccccccccccCcccccchHhh--hhhhhccccCCCcEEEec
Confidence 211 1 1235799999999999994 57888777 889999984
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=8.4e-95 Score=753.50 Aligned_cols=339 Identities=28% Similarity=0.514 Sum_probs=295.7
Q ss_pred CCCCCCeehhhcccccccCccCCCCCcCchhhhcc---c-cCCccc----CCC--CCCCCCccccccHHHHHHHHHcCCC
Q 015209 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NNA--TGDVSVDQYHRYKEDVDIMANLNFD 120 (411)
Q Consensus 51 ~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~---~-~~~~~~----~~~--~~~~a~d~y~~y~eDi~lm~~lG~~ 120 (411)
+||++|+||+|||||||||++++||||+|+||+|+ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 244442 222 5789999999999999999999999
Q ss_pred EEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 015209 121 AYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFK 199 (411)
Q Consensus 121 ~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~ 199 (411)
+|||||+|+||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEecccccchhcc-----ccc-CCc-cCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015209 200 TFGDRVKNWMTFNEPRVVAAL-----GYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQ 272 (411)
Q Consensus 200 ~fgd~V~~w~t~NEP~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~ 272 (411)
+|||+|++|+||||||+++.. ||. .|. +|||.. .....++++||+++|||+||+++|++.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998776 443 333 255431 124579999999999999999999974
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcC--CCCCCHHHHHHh-cCCCcE
Q 015209 273 KQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMV-KGSIDF 349 (411)
Q Consensus 273 ~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~--lp~ft~ed~~~i-kgs~DF 349 (411)
++++||++++..+++|.+++|+|++||++++++ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 468999999999999999999999999998854 679999999999999999999874 489999999999 599999
Q ss_pred EEeccCCCceeeCCCCCC----------CCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 350 VGINQYTAYYMYDPHLKQ----------PKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 350 iGiNYY~s~~v~~~~~~~----------~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
||||||+|.+|+..+... .+++ ...++|||+++|+|++. +|++++++ ++| ||||-
T Consensus 308 lGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~--~L~~~~~~Y~~P-i~ItE 374 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRY--SLNWFWDHYQLP-LFIVE 374 (476)
T ss_pred EEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHH--HHHHHHHhcCCC-EEEEe
Confidence 999999999997421100 0122 24788999999999995 57788877 888 99984
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=4.4e-94 Score=747.80 Aligned_cols=342 Identities=28% Similarity=0.482 Sum_probs=298.4
Q ss_pred CcCCCCCCCeehhhcccccccCccCCCCCcCchhhhcc---c-cCCccc----CC--CCCCCCCccccccHHHHHHHHHc
Q 015209 48 SRESLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFA---K-KPGIVA----NN--ATGDVSVDQYHRYKEDVDIMANL 117 (411)
Q Consensus 48 ~~~~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~---~-~~~~~~----~~--~~~~~a~d~y~~y~eDi~lm~~l 117 (411)
++.+||++|+||+|||||||||++++||||+|+||+|+ + .++++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 244442 22 26789999999999999999999
Q ss_pred CCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHH
Q 015209 118 NFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADF 196 (411)
Q Consensus 118 G~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~ 196 (411)
|+++|||||+|+||+|+|+ |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999975 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEEecccccch-----hcccccC-Ccc-CCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 015209 197 CFKTFGDRVKNWMTFNEPRVV-----AALGYDN-GFF-APGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQK 269 (411)
Q Consensus 197 ~~~~fgd~V~~w~t~NEP~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~ 269 (411)
||++|||+|++|+||||||++ +..||.. |.+ ||+.. +.++.++++||+++|||+||+++|+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6778874 665 44321 22458999999999999999999997
Q ss_pred hccCCCceEEEEecCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCC--CCCCHHHHHHh-cCC
Q 015209 270 YEQKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRL--PKFTKEEVKMV-KGS 346 (411)
Q Consensus 270 ~~~~~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~l--p~ft~ed~~~i-kgs 346 (411)
. ++++||++++..+++|.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| +++
T Consensus 231 ~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 N---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred C---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 5 46899999999999999999999999998773 23359999999999999999998864 78999999999 599
Q ss_pred CcEEEeccCCCceeeCCCCC---------CCCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 347 IDFVGINQYTAYYMYDPHLK---------QPKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 347 ~DFiGiNYY~s~~v~~~~~~---------~~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
+||||||||+|.+|+..+.. ..+++ ...++|||+++|+|++. +|++++++ ++| ||||-
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~--~l~~~~~~Y~~P-i~ItE 375 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRY--ALCELYERYQKP-LFIVE 375 (477)
T ss_pred CCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHH--HHHHHHHhcCCC-EEEeC
Confidence 99999999999999753210 01122 24788999999999994 57888877 888 99983
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=2.2e-93 Score=741.62 Aligned_cols=339 Identities=26% Similarity=0.483 Sum_probs=302.5
Q ss_pred CCCCCCeehhhcccccccCccCCCCCcCchhhhccccCCccc------------CCC--CCCCCCccccccHHHHHHHHH
Q 015209 51 SLPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVA------------NNA--TGDVSVDQYHRYKEDVDIMAN 116 (411)
Q Consensus 51 ~FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~------------~~~--~~~~a~d~y~~y~eDi~lm~~ 116 (411)
+||++|+||+|||||||||++++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998766542 222 578999999999999999999
Q ss_pred cCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHH
Q 015209 117 LNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYAD 195 (411)
Q Consensus 117 lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~ 195 (411)
||+++|||||+|+||+|+|+ +.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEecccccchhccccc-CCc-cCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015209 196 FCFKTFGDRVKNWMTFNEPRVVAALGYD-NGF-FAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQK 273 (411)
Q Consensus 196 ~~~~~fgd~V~~w~t~NEP~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~ 273 (411)
.||++|||+|++|+||||||+++..||. .|. +|||... .+..++++||+++|||+||+++|++.
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 664 4787421 24579999999999999999999975
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcC--CCCCCHHHHHHhcCCCcEEE
Q 015209 274 QKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNR--LPKFTKEEVKMVKGSIDFVG 351 (411)
Q Consensus 274 ~~~kIGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~--lp~ft~ed~~~ikgs~DFiG 351 (411)
++++||++++..+++|.+++|+|++||++++ +.++||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 3689999999999999999999999999877 56899999999999999999999875 69999999999999999999
Q ss_pred eccCCCceeeCCCC--C--------CCCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 352 INQYTAYYMYDPHL--K--------QPKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 352 iNYY~s~~v~~~~~--~--------~~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
||||+|.+|+.... . ...++ ...++|||+++|+|++. +|++++++ ++| ||||-
T Consensus 308 iNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~--~l~~~~~~Y~~P-i~ItE 372 (474)
T PRK09852 308 FSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRI--TMNMMYDRYQKP-LFLVE 372 (474)
T ss_pred EccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHH--HHHHHHHhcCCC-EEEeC
Confidence 99999999975321 0 01122 24788999999999994 57788877 888 99983
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=2.9e-92 Score=726.93 Aligned_cols=338 Identities=40% Similarity=0.715 Sum_probs=310.4
Q ss_pred CCCCCeehhhcccccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHHHHHHHHcCCCEEEeccccccc
Q 015209 52 LPNGFVFGTATSAYQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRI 131 (411)
Q Consensus 52 FP~~FlwG~atsA~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri 131 (411)
||++|+||+||||||+||+++++|||+|+||.+++.++++.++.++++||||||+|+|||++||++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998777776667889999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEec
Q 015209 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (411)
Q Consensus 132 ~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 211 (411)
+|+|+|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997789999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcccccCC
Q 015209 212 NEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLT 291 (411)
Q Consensus 212 NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~~~P~~ 291 (411)
||||+++..||..|.+||+.++. +..++++||+++|||+||+++|++.+ +++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCC
Confidence 99999999999999999985431 35799999999999999999999754 79999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcccchhhhhcCcCCchhhhhhhcCCCCCCHHHHHHhcCCCcEEEeccCCCceeeCCCCCC----
Q 015209 292 RSKADNYAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGNRLPKFTKEEVKMVKGSIDFVGINQYTAYYMYDPHLKQ---- 367 (411)
Q Consensus 292 ~~~~D~~Aa~~~~~~~~~~fldpl~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNYY~s~~v~~~~~~~---- 367 (411)
++|+|+.||++++++.++||+||++.|+||+.|++.++. +|.||++|+++|++++||||||||++.+|+..+...
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~ 304 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFV 304 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCcc
Confidence 999999999999999999999999999999999999974 699999999999999999999999999997643210
Q ss_pred CCCC-CccCCCcceeccCchHHHHHHHhHhhc-CCCcEEEEe
Q 015209 368 PKQV-GYQQDWNAGFACKSFIYFCLLEGTKKK-TNPLIYRIC 407 (411)
Q Consensus 368 ~~~~-~~~~d~~~~~~p~g~~y~~~l~~~~~~-~~p~i~~~~ 407 (411)
..++ ...++|||+++|+|++. +|++++++ ++|+||||-
T Consensus 305 ~~~~~~~~~~~gw~i~P~Gl~~--~L~~~~~rY~~ppi~ITE 344 (427)
T TIGR03356 305 EVPEGVPKTAMGWEVYPEGLYD--LLLRLKEDYPGPPIYITE 344 (427)
T ss_pred ccCCCCCcCCCCCeechHHHHH--HHHHHHHhcCCCCEEEeC
Confidence 1112 24678999999999994 57888877 888899984
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.33 E-value=3.1e-12 Score=130.33 Aligned_cols=109 Identities=24% Similarity=0.408 Sum_probs=87.4
Q ss_pred cccHHHHHHHHHcCCCEEEe-cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcC----
Q 015209 105 HRYKEDVDIMANLNFDAYRF-SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN---- 179 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~Rf-sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~yg---- 179 (411)
..+++|+++|+++|+|++|+ .++|++|||++ |.+|+ ..+|++|+.+.++||++++.+.+...|.||.++|.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 45899999999999999996 57999999998 99998 55899999999999999999999999999987651
Q ss_pred ----------C------CCChHHHHHHHHHHHHHHHHhCCC--cceEEecccccch
Q 015209 180 ----------G------LLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRVV 217 (411)
Q Consensus 180 ----------G------w~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~~ 217 (411)
| ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 1 124556778888888899999984 8899999999754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.24 E-value=2.3e-11 Score=117.21 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccc-cCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCC-C
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIF-PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL-S 183 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~-P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~-~ 183 (411)
..++|++.|+++|+|++|+.|.|..++ |++.+.++.+.++.++++|+.+.++||.+++++|+. |.|.... +++. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 568999999999999999999998888 565457999999999999999999999999999874 6663322 2333 3
Q ss_pred hHHHHHHHHHHHHHHHHhCC--CcceEEecccccchh
Q 015209 184 KRVVKDFADYADFCFKTFGD--RVKNWMTFNEPRVVA 218 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd--~V~~w~t~NEP~~~~ 218 (411)
....+.|.++++.++++|++ .|..|.++|||+...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 44678899999999999954 688999999998643
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.74 E-value=3.1e-08 Score=95.92 Aligned_cols=83 Identities=16% Similarity=0.381 Sum_probs=71.8
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEE--EEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCC
Q 015209 126 ISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITP--YANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 126 IsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p--~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd 203 (411)
..|.+++|++ |.+|++. .|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999998 9999855 688999999999995 4567788899998742 2 567789999999999999999
Q ss_pred CcceEEecccccc
Q 015209 204 RVKNWMTFNEPRV 216 (411)
Q Consensus 204 ~V~~w~t~NEP~~ 216 (411)
+|..|.++|||..
T Consensus 73 ~i~~wdV~NE~~~ 85 (254)
T smart00633 73 KIYAWDVVNEALH 85 (254)
T ss_pred cceEEEEeeeccc
Confidence 9999999999985
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3.5e-07 Score=99.02 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHcCCCEEEec-ccccccccCCCCCCChhHHHHHHHH-HHHHHHcCCEEEEEc-CCCCCcHHHHHhc----
Q 015209 106 RYKEDVDIMANLNFDAYRFS-ISWSRIFPYGTGKVNWKGVAYYNQL-INYLLKRGITPYANL-YHYDLPEALEKKY---- 178 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~Rfs-IsW~ri~P~~~g~~n~~gl~~y~~~-i~~l~~~GI~p~vtL-~H~d~P~~l~~~y---- 178 (411)
.+++|++.||++|+|++|.+ ++|++++|+. |.+|++ +.|.. ++.+.+.||..++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 37899999999999999995 6999999998 999996 66777 999999999999998 8889999999876
Q ss_pred -----------CCCCChHH-HHHHHHHHHH----HHHH-hCCC--cceEEecccccc
Q 015209 179 -----------NGLLSKRV-VKDFADYADF----CFKT-FGDR--VKNWMTFNEPRV 216 (411)
Q Consensus 179 -----------gGw~~~~~-~~~F~~ya~~----~~~~-fgd~--V~~w~t~NEP~~ 216 (411)
++|.+-+. ...|..|++. +.+| ||+. |--|.+-||-..
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 44543332 2347777776 7788 8874 778999998655
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=1.8e-05 Score=81.87 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC--CCCCC-hhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhc---CCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYG--TGKVN-WKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY---NGL 181 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~--~g~~n-~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~y---gGw 181 (411)
++|+..||+.|+|++|..|.|..+.+.+ +..+. ...+++.+++|+..++.||.+++.+|+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866665543 12233 34456899999999999999999999865222211210 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHhCCC--cceEEecccccc
Q 015209 182 L-SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (411)
Q Consensus 182 ~-~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~ 216 (411)
. ....++++.+-++.++.||++. |-...++|||+-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3456799999999999999983 555789999985
No 19
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.98 E-value=0.00016 Score=72.82 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHH--hc--CCCCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK--KY--NGLLS 183 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~--~y--gGw~~ 183 (411)
++=+++||+.|+|++|+-+ | +.|...|..| ++.-.++..+.+++||+.++++|--|. |-.- +. ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~--WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDF--WADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS----BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCC--CCCCCCCCCCccCCC
Confidence 4457999999999999988 5 4454324444 467788999999999999999974332 2110 00 35877
Q ss_pred ---hHHHHHHHHHHHHHHHHhCC---CcceEEecccccchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHH
Q 015209 184 ---KRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLIL 257 (411)
Q Consensus 184 ---~~~~~~F~~ya~~~~~~fgd---~V~~w~t~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 257 (411)
.+..+.-.+|.+.+.+.+++ .++.+.+=||.+.-.+ +|.|.. ..+.-+-.++.
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLN 157 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHH
Confidence 56778888888888777654 5888999999874322 333431 12444455666
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEec
Q 015209 258 SHAAAVQRYRQKYEQKQKGRIGILLD 283 (411)
Q Consensus 258 AHa~av~~~r~~~~~~~~~kIGi~~~ 283 (411)
|=.+|| |+.. ++.||.+.+.
T Consensus 158 ag~~AV---r~~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 158 AGIKAV---REVD---PNIKVMLHLA 177 (332)
T ss_dssp HHHHHH---HTHS---STSEEEEEES
T ss_pred HHHHHH---HhcC---CCCcEEEEEC
Confidence 555554 4443 3577766655
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.82 E-value=5.9e-05 Score=79.85 Aligned_cols=106 Identities=24% Similarity=0.491 Sum_probs=62.4
Q ss_pred cHHHHHHH-HHcCCCEEEec--c--ccccccc-CCCC--CCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhc
Q 015209 107 YKEDVDIM-ANLNFDAYRFS--I--SWSRIFP-YGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (411)
Q Consensus 107 y~eDi~lm-~~lG~~~~Rfs--I--sW~ri~P-~~~g--~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~y 178 (411)
+++.+..+ +++|++.+||- + +..-... ++.| .+|+ ...|+++|.|+++||+|+|.|-. +|.++....
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 55666655 49999999986 2 2222222 2223 2787 66799999999999999999964 777764321
Q ss_pred ------CCCC-ChHHHHHHHHHHHHHHHH----hCC-Ccc--eEEecccccch
Q 015209 179 ------NGLL-SKRVVKDFADYADFCFKT----FGD-RVK--NWMTFNEPRVV 217 (411)
Q Consensus 179 ------gGw~-~~~~~~~F~~ya~~~~~~----fgd-~V~--~w~t~NEP~~~ 217 (411)
.|+. .|+..+.|.++++.+++| ||. .|. +|++||||+..
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 2222 245677787777666555 552 466 56899999974
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.69 E-value=0.00017 Score=72.45 Aligned_cols=88 Identities=16% Similarity=0.322 Sum_probs=67.1
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEE--EcCCCCCcHHHHHhcCCCCChH---HHHHHHHHHHHHHH
Q 015209 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA--NLYHYDLPEALEKKYNGLLSKR---VVKDFADYADFCFK 199 (411)
Q Consensus 125 sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v--tL~H~d~P~~l~~~ygGw~~~~---~~~~F~~ya~~~~~ 199 (411)
...|..++|.+ |.+|++. .|++++-++++||++-. -+.|--.|.|+... .-+...+ ......+|.+.+++
T Consensus 43 ~~Kw~~~e~~~-g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~ 117 (320)
T PF00331_consen 43 EMKWGSIEPEP-GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVT 117 (320)
T ss_dssp TTSHHHHESBT-TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcCCC-CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHh
Confidence 36799999998 9999854 69999999999999874 34466799999863 1233333 78889999999999
Q ss_pred HhCC--CcceEEecccccch
Q 015209 200 TFGD--RVKNWMTFNEPRVV 217 (411)
Q Consensus 200 ~fgd--~V~~w~t~NEP~~~ 217 (411)
||++ +|..|-++|||-..
T Consensus 118 ~y~~~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 118 RYKDKGRIYAWDVVNEAIDD 137 (320)
T ss_dssp HTTTTTTESEEEEEES-B-T
T ss_pred HhccccceEEEEEeeecccC
Confidence 9995 89999999999643
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.44 E-value=0.00042 Score=69.57 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC--------CCCCcHHHHHh
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------HYDLPEALEKK 177 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~--------H~d~P~~l~~~ 177 (411)
.|++-++.||++|+|++-+-|.|.--||++ |.+|++|..=.+.+|+.++++||-+++-.= .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 478889999999999999999999999998 999999988899999999999999877521 13489999876
Q ss_pred cCCCC---ChHHHHHHHHHHHHHHHHhCC-------CcceEEeccccc
Q 015209 178 YNGLL---SKRVVKDFADYADFCFKTFGD-------RVKNWMTFNEPR 215 (411)
Q Consensus 178 ygGw~---~~~~~~~F~~ya~~~~~~fgd-------~V~~w~t~NEP~ 215 (411)
.+... ++...+.-.+|.+.+++...+ -|-...+=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 33322 344555555555555555433 234455556643
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.98 E-value=0.00094 Score=68.48 Aligned_cols=105 Identities=16% Similarity=0.316 Sum_probs=77.7
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------CCCc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~d~P 171 (411)
....+..++.+|++|++.+-+.+-|.-+|+++++++|++ .|+++++.+++.|++..+.|. | .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 346789999999999999999999999999977999985 599999999999998877652 3 3689
Q ss_pred HHHHHhc-----------CC--------CCChHHHHHHHHHHHHHHHHhCCCcceEEecccc
Q 015209 172 EALEKKY-----------NG--------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEP 214 (411)
Q Consensus 172 ~~l~~~y-----------gG--------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP 214 (411)
.|+.++. |. |....+++.|.+|-+.+.++|.+.. -|+-|.
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 9987531 21 3333448999999999999987754 344443
No 24
>PLN02161 beta-amylase
Probab=96.95 E-value=0.0039 Score=65.38 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=84.9
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-CC-----------
Q 015209 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-HY----------- 168 (411)
Q Consensus 101 ~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H~----------- 168 (411)
..+....+..++.+|.+|++.+-+.+=|--+|.++++++|+++ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4566667889999999999999999999999998889999955 99999999999998777654 32
Q ss_pred CCcHHHHHh--------c---CCC----------------CChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 169 DLPEALEKK--------Y---NGL----------------LSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 169 d~P~~l~~~--------y---gGw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
-||+|+.+. | .|. ..+--++.|.+|-+-+..+|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998753 1 121 2233468888988888888877653 25555443
No 25
>PLN02803 beta-amylase
Probab=96.95 E-value=0.0034 Score=66.10 Aligned_cols=107 Identities=19% Similarity=0.338 Sum_probs=81.5
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------CCCc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~d~P 171 (411)
-...+..++.+|.+|++.+-+.+=|--+|.++++++|++| |+++++.+++.|++..+.|. | .-||
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3446788999999999999999999999998889999955 99999999999998777664 3 2599
Q ss_pred HHHHHh--------c---CCC----------------CChHHHHHHHHHHHHHHHHhCCCcceEEeccccc
Q 015209 172 EALEKK--------Y---NGL----------------LSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (411)
Q Consensus 172 ~~l~~~--------y---gGw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 215 (411)
+|+.+. | .|- ..+--++.|.+|-+-+-.+|.+... -|+.|..
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 998753 1 121 2233467888888888888777553 3555544
No 26
>PLN00197 beta-amylase; Provisional
Probab=96.91 E-value=0.0038 Score=66.01 Aligned_cols=108 Identities=21% Similarity=0.365 Sum_probs=82.2
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------CCCc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~d~P 171 (411)
-.-.+..++.+|.+|++.+-+.+=|--+|+++++++|++| |+++++.+++.|++..+.|. | .-||
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3347888999999999999999999999998889999955 99999999999998777664 3 2599
Q ss_pred HHHHHh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 172 EALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 172 ~~l~~~--------y---gGw~----------------~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
+|+.+. | .|-. .|--++.|.+|-+-+-.+|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 998753 1 1211 222368888888888888777544 24555443
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=96.82 E-value=0.0048 Score=68.63 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--------CCCCCcHHHHHh
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--------YHYDLPEALEKK 177 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--------~H~d~P~~l~~~ 177 (411)
.|++=++.||++|+|++-.=|-|.--||++ |.+|++|..=..++|+.+.+.|+-+++-. -.-.+|.||.+.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 477779999999999999999999999998 99999999889999999999999888753 245789999754
Q ss_pred cCCCC----ChHHHHHHHHHHHHHHHHhC---------CCcceEEecccc
Q 015209 178 YNGLL----SKRVVKDFADYADFCFKTFG---------DRVKNWMTFNEP 214 (411)
Q Consensus 178 ygGw~----~~~~~~~F~~ya~~~~~~fg---------d~V~~w~t~NEP 214 (411)
.|.. ++...++-.+|.+.+++... +-|-...+=||-
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 4532 44555556666666666552 224455566774
No 28
>PLN02801 beta-amylase
Probab=96.76 E-value=0.0078 Score=63.18 Aligned_cols=99 Identities=16% Similarity=0.365 Sum_probs=78.1
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------CCCc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDLP 171 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~d~P 171 (411)
-...+..++.+|.+|++.+-+.+-|--+|.++++++|+++ |+++++.+++.|++..+.|. | .-||
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3446888999999999999999999999998889999955 99999999999998766654 2 3589
Q ss_pred HHHHHh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhCCCc
Q 015209 172 EALEKK--------Y---NG----------------LLSKRVVKDFADYADFCFKTFGDRV 205 (411)
Q Consensus 172 ~~l~~~--------y---gG----------------w~~~~~~~~F~~ya~~~~~~fgd~V 205 (411)
+|+.+. | .| +..+--++.|.+|-+-+.++|.+..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 998753 1 12 1223346889999888888887754
No 29
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.62 E-value=0.014 Score=59.65 Aligned_cols=101 Identities=24% Similarity=0.387 Sum_probs=55.5
Q ss_pred HHcCCCEEEecc---c------------ccccc--cCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHh
Q 015209 115 ANLNFDAYRFSI---S------------WSRIF--PYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (411)
Q Consensus 115 ~~lG~~~~RfsI---s------------W~ri~--P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ 177 (411)
+.+|++.+|+.| + |.|.+ +..+|.+|+.+=+-=+.++++.+++|++.++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 358999999877 3 33432 2234778875544556689999999999887 4456777776542
Q ss_pred c---CC-----CCChHHHHHHHHHHHHHHHHhCC---CcceEEecccccc
Q 015209 178 Y---NG-----LLSKRVVKDFADYADFCFKTFGD---RVKNWMTFNEPRV 216 (411)
Q Consensus 178 y---gG-----w~~~~~~~~F~~ya~~~~~~fgd---~V~~w~t~NEP~~ 216 (411)
. |+ =+.++..++|++|-..|+++|.. .+++--++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 1 11 14567899999999999999833 5888999999983
No 30
>PLN02905 beta-amylase
Probab=96.51 E-value=0.013 Score=62.76 Aligned_cols=101 Identities=16% Similarity=0.332 Sum_probs=78.9
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------C
Q 015209 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------Y 168 (411)
Q Consensus 101 ~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~ 168 (411)
.....-.+..++.+|.+|++.+-+.+=|--+|+++++++|++| |+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3456667889999999999999999999999998889999955 99999999999998777664 3 2
Q ss_pred CCcHHHHHh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhCCC
Q 015209 169 DLPEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDR 204 (411)
Q Consensus 169 d~P~~l~~~--------y---gGw~----------------~~~~~~~F~~ya~~~~~~fgd~ 204 (411)
-||+|+.+. | .|-. .+--++.|.+|-+-+..+|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599998753 1 1211 2334688888888887777664
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.0071 Score=60.24 Aligned_cols=86 Identities=19% Similarity=0.364 Sum_probs=71.4
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE--cCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhC
Q 015209 125 SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--LYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 125 sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt--L~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fg 202 (411)
-..|.-|+|+. |.+|+++ =|.+.+-++++||..--- +.|--.|.|+.. ..+..+...+...++...|.+||+
T Consensus 66 emKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYk 139 (345)
T COG3693 66 EMKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYK 139 (345)
T ss_pred ccccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhcc
Confidence 45799999986 9999976 488899999999975432 345578999853 237778899999999999999999
Q ss_pred CCcceEEecccccc
Q 015209 203 DRVKNWMTFNEPRV 216 (411)
Q Consensus 203 d~V~~w~t~NEP~~ 216 (411)
+.|..|=+.|||--
T Consensus 140 g~~~sWDVVNE~vd 153 (345)
T COG3693 140 GSVASWDVVNEAVD 153 (345)
T ss_pred CceeEEEecccccC
Confidence 99999999999965
No 32
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.45 E-value=0.018 Score=56.76 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcC----
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN---- 179 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~yg---- 179 (411)
...++.|+++||++|+|++|.+- .|.. .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCccc--cCCcccc
Confidence 46789999999999999999952 2222 456778889999998766431111110 001
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC--cceEEecccc
Q 015209 180 GLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEP 214 (411)
Q Consensus 180 Gw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP 214 (411)
--.+++..+.+.+-++..++++.+. |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0125677888888889999999884 8899999998
No 33
>PLN02705 beta-amylase
Probab=96.40 E-value=0.016 Score=61.87 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=77.2
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC-C-----------CCC
Q 015209 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY-H-----------YDL 170 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-H-----------~d~ 170 (411)
+-.-.+..++.+|.+|++.+-+.+=|--+|.++++++|++| |+++++.+++.|++..+.|. | .-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 34557888999999999999999999999998889999955 99999999999998766654 3 259
Q ss_pred cHHHHHh--------c---CCCC----------------ChHHHHHHHHHHHHHHHHhCCC
Q 015209 171 PEALEKK--------Y---NGLL----------------SKRVVKDFADYADFCFKTFGDR 204 (411)
Q Consensus 171 P~~l~~~--------y---gGw~----------------~~~~~~~F~~ya~~~~~~fgd~ 204 (411)
|+|+.+. | .|-. .+--++.|.+|.+-+-.+|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998753 1 1211 2234588888888887777664
No 34
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.22 E-value=0.03 Score=55.52 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCCEEEecc--ccccc--------cc--CCC------CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCC
Q 015209 109 EDVDIMANLNFDAYRFSI--SWSRI--------FP--YGT------GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL 170 (411)
Q Consensus 109 eDi~lm~~lG~~~~RfsI--sW~ri--------~P--~~~------g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~ 170 (411)
.-++..|+-|+|.+|+.+ .|... .| ..+ ..+|++=+++.+++|+.|.++||++.+.+.| +.
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~ 112 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GC 112 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HH
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CC
Confidence 346778999999999997 44433 11 111 1378888999999999999999999887765 22
Q ss_pred cHHHHHhcCCCCC---hHHHHHHHHHHHHHHHHhCCC-cceEEecccc
Q 015209 171 PEALEKKYNGLLS---KRVVKDFADYADFCFKTFGDR-VKNWMTFNEP 214 (411)
Q Consensus 171 P~~l~~~ygGw~~---~~~~~~F~~ya~~~~~~fgd~-V~~w~t~NEP 214 (411)
|- .+ +.|.. .-..+.-.+|.+.|++||+.. -..|++-||-
T Consensus 113 ~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 113 PY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred cc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 21 11 44532 234678889999999999998 5779998885
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.64 E-value=0.05 Score=59.20 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHH-------h
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK-------K 177 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~-------~ 177 (411)
..+..|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|... .
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC------------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 3478899999999999999962 2322 46788899999988765533322222210 0
Q ss_pred cCCCC----ChHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Q 015209 178 YNGLL----SKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (411)
Q Consensus 178 ygGw~----~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 215 (411)
...|. +++..+.+.+-++.+++++++. |-.|.+-||+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 01222 3567788889999999999885 88999999973
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.81 E-value=0.19 Score=45.80 Aligned_cols=101 Identities=17% Similarity=0.311 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccc-----cCC--CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhc
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIF-----PYG--TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~-----P~~--~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~y 178 (411)
+|+++++.|+++|++++=+. |+... |.. ++.+.....+..+.+++++.+.||++++.|+. -|.|.++
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 58999999999999988533 33322 221 01122234467999999999999999999974 3566552
Q ss_pred CCCCChH-HHHHHHHHHHHHHHHhCCC--cceEEeccccc
Q 015209 179 NGLLSKR-VVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (411)
Q Consensus 179 gGw~~~~-~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 215 (411)
.+.+ -++.=..-++.+.++||.. +..|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 2333345677788889874 55676666664
No 37
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.54 E-value=2.6 Score=42.10 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=78.4
Q ss_pred CCCCCCeehhhccc-ccccCccCCCCCcCchhhhccccCCcccCCCCCCCCCccccccHHH-HHHHHHcCCCEEEecccc
Q 015209 51 SLPNGFVFGTATSA-YQVEGMAHKDGRGPSIWDVFAKKPGIVANNATGDVSVDQYHRYKED-VDIMANLNFDAYRFSISW 128 (411)
Q Consensus 51 ~FP~~FlwG~atsA-~QvEG~~~~dgk~~siWD~~~~~~~~~~~~~~~~~a~d~y~~y~eD-i~lm~~lG~~~~RfsIsW 128 (411)
..|++|+.|+-.|. .|+|-. + ++..+ .++. ++| ++.+|+.|+|.+|+-| |
T Consensus 34 ~~~~dFikGaDis~l~~lE~~---G--------------vkf~d-~ng~---------~qD~~~iLK~~GvNyvRlRv-w 85 (403)
T COG3867 34 NSPNDFIKGADISSLIELENS---G--------------VKFFD-TNGV---------RQDALQILKNHGVNYVRLRV-W 85 (403)
T ss_pred CChHHhhccccHHHHHHHHHc---C--------------ceEEc-cCCh---------HHHHHHHHHHcCcCeEEEEE-e
Confidence 47899999987654 456521 1 12111 1221 444 6999999999999976 2
Q ss_pred cccc-cCCC---CCCChhHHHHHHHHHHHHHHcCCEEEEEcCC---CCCcHHHHHhcCCCCC---hHHHHHHHHHHHHHH
Q 015209 129 SRIF-PYGT---GKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEALEKKYNGLLS---KRVVKDFADYADFCF 198 (411)
Q Consensus 129 ~ri~-P~~~---g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H---~d~P~~l~~~ygGw~~---~~~~~~F~~ya~~~~ 198 (411)
-.=. -+|. |.-|. ++---++-.+.++.||++++..|. |.=|.- +++=..|.+ ++...+--+|.+.+.
T Consensus 86 ndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW~~l~fe~lk~avy~yTk~~l 162 (403)
T COG3867 86 NDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAWENLNFEQLKKAVYSYTKYVL 162 (403)
T ss_pred cCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHhhhcCHHHHHHHHHHHHHHHH
Confidence 2111 1121 23332 445567788899999999999973 444432 111123644 233344455666665
Q ss_pred HHhC---CCcceEEeccccc
Q 015209 199 KTFG---DRVKNWMTFNEPR 215 (411)
Q Consensus 199 ~~fg---d~V~~w~t~NEP~ 215 (411)
+++. =......+=||-|
T Consensus 163 ~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 163 TTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHHcCCCccceEeccccC
Confidence 5554 4566677889976
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.29 E-value=0.39 Score=52.07 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=83.0
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--------CCCCCcHHHHHh
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--------YHYDLPEALEKK 177 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--------~H~d~P~~l~~~ 177 (411)
.|++=|+.+|++|+|++..=+-|.--||.+ |++|++|.-=..++|..+.++|+=+++-+ .+-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 477779999999999999999999999998 99999997667788999999998766543 356789888765
Q ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC-------CCcceEEeccccc
Q 015209 178 YNGL----LSKRVVKDFADYADFCFKTFG-------DRVKNWMTFNEPR 215 (411)
Q Consensus 178 ygGw----~~~~~~~~F~~ya~~~~~~fg-------d~V~~w~t~NEP~ 215 (411)
.|- -|+....+..+|.+.++...+ .=|-.-.+=||-.
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 553 366778888888888877433 2244445666644
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.00 E-value=0.43 Score=55.30 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC---CCCCcHHHHHhcC
Q 015209 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLPEALEKKYN 179 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~---H~d~P~~l~~~yg 179 (411)
....+++||++||++|+|++|+| -.|.. ..+.+.|-+.||-++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 35678999999999999999996 23332 3456788889997776542 111110 0 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Q 015209 180 GLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (411)
Q Consensus 180 Gw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 215 (411)
...+++..+.+.+=++..++|.++. |-.|..-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124666777888888999999985 88999999975
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.44 E-value=0.86 Score=52.86 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=63.1
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc----CCCCCcHHHHHhcC
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKKYN 179 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL----~H~d~P~~l~~~yg 179 (411)
...+++|+++||++|+|++|+| ..|.. ..+.+.|-+.||=++--. +.|.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678999999999999999997 24443 356778889999777543 1111100 00
Q ss_pred CC--CChHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Q 015209 180 GL--LSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPR 215 (411)
Q Consensus 180 Gw--~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 215 (411)
.+ .++...+.|.+=++..++|.+.. |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23445667777788999999985 88999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.57 E-value=1.6 Score=49.18 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=65.5
Q ss_pred CCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcC
Q 015209 100 SVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYN 179 (411)
Q Consensus 100 a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~yg 179 (411)
.+-.+..+.+|+++||++|+|++|.| =.|+. ....+.|-+.||=++=-..+. -++
T Consensus 316 ~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~--------~~~ 370 (808)
T COG3250 316 RVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIE--------THG 370 (808)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchh--------hcC
Confidence 34445668999999999999999999 33333 456677778899777544321 123
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCC--CcceEEeccccc
Q 015209 180 GLLSKRVVKDFADYADFCFKTFGD--RVKNWMTFNEPR 215 (411)
Q Consensus 180 Gw~~~~~~~~F~~ya~~~~~~fgd--~V~~w~t~NEP~ 215 (411)
+..+++..+...+=+++.++|-++ .|-.|..-||.+
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 445566666777778888888877 488999999966
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=90.17 E-value=0.41 Score=49.33 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=72.4
Q ss_pred HHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCC--ChHHHHHHHH
Q 015209 115 ANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL--SKRVVKDFAD 192 (411)
Q Consensus 115 ~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~--~~~~~~~F~~ 192 (411)
+|+|++-+|.---|.-++.. =-+++ .++|+++|.+...|+.-+.+-.||+.+.-....|.+=. .....+.++.
T Consensus 15 ~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~ 89 (428)
T COG3664 15 DEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAA 89 (428)
T ss_pred hhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHH
Confidence 78899999888888722222 23444 78999999999999555556678887776555444422 2347899999
Q ss_pred HHHHHHHHhCCC---cceEEecccccchh
Q 015209 193 YADFCFKTFGDR---VKNWMTFNEPRVVA 218 (411)
Q Consensus 193 ya~~~~~~fgd~---V~~w~t~NEP~~~~ 218 (411)
+++.|+.+||-+ .-..+.+||||..+
T Consensus 90 fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 90 FLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHhChhheeecceeecCCCCccc
Confidence 999999999963 33467999999875
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=84.98 E-value=0.48 Score=49.80 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=78.7
Q ss_pred cHHHHHHHHHcCCCEEEecccc-cccccCCCCCCChhH-HHHHHHHHHHHHHcCCEEEEEcCC----C-----CCcHHHH
Q 015209 107 YKEDVDIMANLNFDAYRFSISW-SRIFPYGTGKVNWKG-VAYYNQLINYLLKRGITPYANLYH----Y-----DLPEALE 175 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW-~ri~P~~~g~~n~~g-l~~y~~~i~~l~~~GI~p~vtL~H----~-----d~P~~l~ 175 (411)
.+.|++.++.+|++..|++|-= ..+- +..|..|.+. +.+.+.+++.+...+|+.++||.. + -.| |..
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip-wag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP-WAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee-cCC
Confidence 4678999999999999999532 3322 2237777766 889999999999999999999862 1 122 110
Q ss_pred Hhc--CCCCChHHHHHHHHHHHHHHHHhCCC--cceEEecccccc
Q 015209 176 KKY--NGLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRV 216 (411)
Q Consensus 176 ~~y--gGw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~ 216 (411)
... .-...+.+...|.+|++.+++.|+.. +.-|+.-|||.+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 000 01234567888999999999999875 667999999876
No 44
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=84.42 E-value=8.1 Score=38.69 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=62.5
Q ss_pred ccccHHHHHHHHHcCCCEEEec---ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCC
Q 015209 104 YHRYKEDVDIMANLNFDAYRFS---ISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNG 180 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~Rfs---IsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygG 180 (411)
..||++-.++++++|+|..-+. ..-..+. .+-++...++-+.++.+||++++++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt--------~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLT--------PEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGS--------TTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcC--------HHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 3578888999999999998754 1222222 22366788999999999999999996 7888754 55
Q ss_pred -----CCChHHHHHHHHHHHHHHHHhCC
Q 015209 181 -----LLSKRVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 181 -----w~~~~~~~~F~~ya~~~~~~fgd 203 (411)
-++++++.+|.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999766
No 45
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=83.96 E-value=4.4 Score=40.71 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcH-HHHHhcCCCCCh
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE-ALEKKYNGLLSK 184 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~-~l~~~ygGw~~~ 184 (411)
..+.|+.+|++||+|++|+= -|-|+. | .|.-++.|.++||=.++.|. .|. .+... .-|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~----n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~-~P~~s- 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK----N------HDECMSAFADAGIYVILDLN---TPNGSINRS-DPAPS- 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES----BTTBS--TT-S-----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC----C------HHHHHHHHHhCCCEEEEecC---CCCccccCC-CCcCC-
Confidence 56999999999999999974 233332 2 58889999999999999995 342 22111 11111
Q ss_pred HHHHHHHHHHHHH--HHHhCCCcceEEeccc
Q 015209 185 RVVKDFADYADFC--FKTFGDRVKNWMTFNE 213 (411)
Q Consensus 185 ~~~~~F~~ya~~~--~~~fgd~V~~w~t~NE 213 (411)
=..+.+.+|..++ |.+| +.|-.+..=||
T Consensus 115 w~~~l~~~~~~vid~fa~Y-~N~LgFf~GNE 144 (314)
T PF03198_consen 115 WNTDLLDRYFAVIDAFAKY-DNTLGFFAGNE 144 (314)
T ss_dssp --HHHHHHHHHHHHHHTT--TTEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHhccC-CceEEEEecce
Confidence 1245666666654 4455 33555555555
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=80.01 E-value=5.1 Score=36.36 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=42.5
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccc--C--CC-----CCCCh--hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFP--Y--GT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P--~--~~-----g~~n~--~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
+....+-++.++++|++++-++=-+..... . +. -.+|+ -..+=++++|++++++||++++.+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455677788999999999988754443321 1 10 01221 124558999999999999999986
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=76.40 E-value=13 Score=37.25 Aligned_cols=98 Identities=23% Similarity=0.258 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHcCCCEEEecccc-------cccccCCC---CCC-ChhHHHHHHHHHHHHHHcCCEEEEEc----CC--
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISW-------SRIFPYGT---GKV-NWKGVAYYNQLINYLLKRGITPYANL----YH-- 167 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW-------~ri~P~~~---g~~-n~~gl~~y~~~i~~l~~~GI~p~vtL----~H-- 167 (411)
...++-++.++++|+|++=+.+.+ |.++|... |.. ...|.+.+..+|++++++||+...-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345777899999999987655433 34444210 111 11256779999999999999987543 11
Q ss_pred -----CCCcHHHHHh-------c----CC--CC---ChHHHHHHHHHHHHHHHHhC
Q 015209 168 -----YDLPEALEKK-------Y----NG--LL---SKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 168 -----~d~P~~l~~~-------y----gG--w~---~~~~~~~F~~ya~~~~~~fg 202 (411)
-..|.|+..+ + ++ |+ +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246665422 1 11 44 46888999999999999995
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=76.16 E-value=12 Score=32.79 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCEEEeccc----ccccccCCCC--CCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCC
Q 015209 109 EDVDIMANLNFDAYRFSIS----WSRIFPYGTG--KVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGL 181 (411)
Q Consensus 109 eDi~lm~~lG~~~~RfsIs----W~ri~P~~~g--~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw 181 (411)
+=++.+|++|+|++-+... |+ -.|+..| ....+ -+.+.++|++|+++||++++-+... .-.++.+++..|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW 79 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCce
Confidence 3468899999999998322 21 1233222 12223 4789999999999999999876543 333333444444
No 49
>PLN02361 alpha-amylase
Probab=72.65 E-value=8.9 Score=39.92 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=46.0
Q ss_pred ccccccHHHHHHHHHcCCCEEEecccccccccCCCCC-----CCh--hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNW--KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 102 d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~-----~n~--~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.+|....+-++-++++|++++=++=.....-+.|... +|. -..+=++++|++|+++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4788899999999999999998875443333333111 111 123458999999999999999863
No 50
>PLN00196 alpha-amylase; Provisional
Probab=70.60 E-value=8.8 Score=40.30 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=43.7
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCC-----CCh---hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNW---KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~-----~n~---~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
|....+.++-+++||++++=++=......+.|... +|. -..+=++++|++++++||++++..
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55567889999999999999885444333333211 221 112458999999999999999973
No 51
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=70.30 E-value=35 Score=34.71 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=66.3
Q ss_pred CCCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhc
Q 015209 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKY 178 (411)
Q Consensus 99 ~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~y 178 (411)
+|.=||+ |+ =.....+.|++.+|+. + |++-.+ +....+++.++++|+..=+...|-.|.+-+.++|
T Consensus 78 VaDiHf~-~r-la~~~~~~g~~k~RIN---------P-GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YR-LALEAAECGVDKVRIN---------P-GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HH-HHHHhhhcCcceEEEC---------C-cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3444665 33 2334467889999975 3 555443 3689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 015209 179 NGLLSKRVVKDFADYADFCFKT 200 (411)
Q Consensus 179 gGw~~~~~~~~F~~ya~~~~~~ 200 (411)
++-+.+..++--.++|+.+-+.
T Consensus 144 ~~pt~ealveSAl~~a~~~e~l 165 (361)
T COG0821 144 GGPTPEALVESALEHAELLEEL 165 (361)
T ss_pred cCCCHHHHHHHHHHHHHHHHHC
Confidence 8877777777777777776443
No 52
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=68.11 E-value=9.7 Score=36.43 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=39.7
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCC-C-------CCC--hhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KVN--WKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g-------~~n--~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
..+-++.+|+||++++-++=-+. .|.+. | .+| .-..+=+++||+++.++||++|+++
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35668899999999999884433 11111 1 111 1235668999999999999999986
No 53
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=67.78 E-value=2.9 Score=33.65 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=14.1
Q ss_pred HHHHhCC--CcceEEeccc-cc
Q 015209 197 CFKTFGD--RVKNWMTFNE-PR 215 (411)
Q Consensus 197 ~~~~fgd--~V~~w~t~NE-P~ 215 (411)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677876 7999999999 76
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=66.38 E-value=25 Score=38.01 Aligned_cols=92 Identities=14% Similarity=0.231 Sum_probs=58.9
Q ss_pred ccccHHHHHHHHHcCCCEEEec-c-------cc-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--C
Q 015209 104 YHRYKEDVDIMANLNFDAYRFS-I-------SW-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~Rfs-I-------sW-------~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--~ 166 (411)
+.-..+-++-+++||++++-+. | .| -.+.|.- |. .+=++++|++|.++||++++.+ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 4555677899999999999865 2 12 1111111 32 3458999999999999999974 4
Q ss_pred CCC---------CcHHHHHh-cCCC------CCh---HHHHHHHHHHHHHHHHhC
Q 015209 167 HYD---------LPEALEKK-YNGL------LSK---RVVKDFADYADFCFKTFG 202 (411)
Q Consensus 167 H~d---------~P~~l~~~-ygGw------~~~---~~~~~F~~ya~~~~~~fg 202 (411)
|.. -| |+... ..+| .++ .+.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 532 12 22211 1234 234 777778888888888776
No 55
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=66.22 E-value=29 Score=34.55 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=51.2
Q ss_pred HHHHHcCCCEEEeccc--ccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCC------
Q 015209 112 DIMANLNFDAYRFSIS--WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLS------ 183 (411)
Q Consensus 112 ~lm~~lG~~~~RfsIs--W~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~------ 183 (411)
+.+++.|++++-++.- -....|.-.|.............|..|+++|++++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~~~ 85 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLATS 85 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccccC
Confidence 5678899998887742 22222221111110112345778999999999999998 66543
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q 015209 184 KRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg 202 (411)
....+.|++....+.++||
T Consensus 86 ~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred cccHHHHHHHHHHHHHHhC
Confidence 3467888888888888887
No 56
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.81 E-value=32 Score=36.66 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=71.4
Q ss_pred cccccHHHHHHHHHcCCCEEEec------------------------------ccccccccCC--CCCCChhH----HHH
Q 015209 103 QYHRYKEDVDIMANLNFDAYRFS------------------------------ISWSRIFPYG--TGKVNWKG----VAY 146 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~Rfs------------------------------IsW~ri~P~~--~g~~n~~g----l~~ 146 (411)
.+.+|+..|+.|+-.|+|..=.- +.|.|+---. .|...++- +-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 36789999999999999965422 2344442110 13333221 223
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhc--------CCCC---------------ChHHHHHHHHHHHHHHHHhCC
Q 015209 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKY--------NGLL---------------SKRVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 147 y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~y--------gGw~---------------~~~~~~~F~~ya~~~~~~fgd 203 (411)
=.++|+++++-||.|++-.+---.|..|..-| +.|. .+-+++-=..|.+...++||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 46799999999999999988888899887654 2232 122344445566777889997
Q ss_pred C--cceEEecccc
Q 015209 204 R--VKNWMTFNEP 214 (411)
Q Consensus 204 ~--V~~w~t~NEP 214 (411)
- +-.=-||||.
T Consensus 236 ~tniy~~DpFNE~ 248 (666)
T KOG2233|consen 236 VTNIYSADPFNEI 248 (666)
T ss_pred cccccccCccccc
Confidence 2 2222388884
No 57
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=65.44 E-value=35 Score=33.72 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCccccccHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCC------CcH
Q 015209 100 SVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYD------LPE 172 (411)
Q Consensus 100 a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d------~P~ 172 (411)
+.--+.++++=|+..+++|+..+=+.--|+.-..... .......-....++++-.+++|+.+++-.+|-+ +=.
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~ 106 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK 106 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence 3445788999999999999999999999987332211 001111113468999999999999999998765 211
Q ss_pred HHHHh---c---C------CC---CChHHHHHHHHHHHHHHHH
Q 015209 173 ALEKK---Y---N------GL---LSKRVVKDFADYADFCFKT 200 (411)
Q Consensus 173 ~l~~~---y---g------Gw---~~~~~~~~F~~ya~~~~~~ 200 (411)
-+++. | | || .+...++.+.+-++.++++
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 12111 2 1 23 3456788888888888776
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.79 E-value=34 Score=37.64 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=59.3
Q ss_pred ccccHHH-HHHHHHcCCCEEEecc--------ccc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE--c
Q 015209 104 YHRYKED-VDIMANLNFDAYRFSI--------SWS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN--L 165 (411)
Q Consensus 104 y~~y~eD-i~lm~~lG~~~~RfsI--------sW~-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt--L 165 (411)
|.-..+. ++-+|+||++++=+.= +|. .|.|.= |. .+=++++|+++.++||++++. .
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445566 4899999999998652 221 122221 33 344899999999999999998 4
Q ss_pred CCCCCcH----HHH--------H---h-cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 015209 166 YHYDLPE----ALE--------K---K-YNGL-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 166 ~H~d~P~----~l~--------~---~-ygGw-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
.|..... ++. + . +.+| .++++.+.+.+-++..+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4542111 110 0 0 1123 367888888888888888877
No 59
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=64.58 E-value=22 Score=37.77 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=42.1
Q ss_pred cccccHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 103 ~y~~y~eD-----i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
.|..|.+| +++.++.|++.+|..-. .|+ ++-....|+..++.|.+..+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~-----------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA-----------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc-----------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47778889 89999999999998742 232 2445777888888888877777775555
No 60
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=64.00 E-value=20 Score=35.85 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-EEEecc-cc-cccccC--CCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCC
Q 015209 108 KEDVDIMANLNFD-AYRFSI-SW-SRIFPY--GTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLL 182 (411)
Q Consensus 108 ~eDi~lm~~lG~~-~~RfsI-sW-~ri~P~--~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~ 182 (411)
+|.+++|+++|++ .+=+++ +- .++.-. +.| .+ .+-+.+.++.++++||.+.+.+. +.+| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999988 455554 21 122211 112 23 35578999999999999777664 3444 222
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEecccccchhcccccCCccCC
Q 015209 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAP 229 (411)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~~~P 229 (411)
..++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.+.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23678888888888765 45888877777677765444456666644
No 61
>PRK05402 glycogen branching enzyme; Provisional
Probab=63.68 E-value=39 Score=37.95 Aligned_cols=93 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred ccccHHHH-HHHHHcCCCEEEeccc--------cc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--
Q 015209 104 YHRYKEDV-DIMANLNFDAYRFSIS--------WS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL-- 165 (411)
Q Consensus 104 y~~y~eDi-~lm~~lG~~~~RfsIs--------W~-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL-- 165 (411)
|.-..+.+ +-+|+||++++=+.=- |- .|.|.= |. .+=++++|++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33344553 7789999999976621 21 122221 33 3448999999999999999984
Q ss_pred CCCCCc-----------HHHHH-----hcCC-------CCChHHHHHHHHHHHHHHHHhC
Q 015209 166 YHYDLP-----------EALEK-----KYNG-------LLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 166 ~H~d~P-----------~~l~~-----~ygG-------w~~~~~~~~F~~ya~~~~~~fg 202 (411)
.|.... .+... .+.. +.++++.+.+.+-++..+++||
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 454211 11000 0112 3467888888888888888877
No 62
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=63.47 E-value=25 Score=37.36 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=61.4
Q ss_pred cccccHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH----
Q 015209 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEA---- 173 (411)
Q Consensus 103 ~y~~y~eD-----i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~---- 173 (411)
.|..|.+| ++...+.|++.+|+.++-+.+ +-....++..++.|++...++.+-..|..
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 46668888 899999999999999766532 33566778888888887777655333411
Q ss_pred HHH---h-------------cCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 174 LEK---K-------------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 174 l~~---~-------------ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
+.+ + ..|...|. ...+.++.+.++++ .--...+-|-..+
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P~---~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLTPK---RAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcCHH---HHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 110 0 13455544 45556666666775 2224667776654
No 63
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=63.21 E-value=22 Score=35.10 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=58.7
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChH
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~ 185 (411)
-+.|++..++.|++.+++.++=|...-..+ +.--.+.++-..++++.+++.|+++.+++-+|..|- +.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 367999999999999999985554433321 333457788899999999999999999998765542 11
Q ss_pred HHHHHHHHHHHHHH
Q 015209 186 VVKDFADYADFCFK 199 (411)
Q Consensus 186 ~~~~F~~ya~~~~~ 199 (411)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24566666666543
No 64
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=62.79 E-value=16 Score=37.31 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=57.7
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLL 182 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~---~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~ 182 (411)
-+|.++.|+++|++ |+||...-+-++- -|... ..+-..+.|+.+++.|+..+ +.+. +++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 36889999999999 5555544443331 03221 23457788999999999743 5553 45552
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEecccccchh
Q 015209 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVA 218 (411)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~ 218 (411)
++.+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2355666666666543225666655555777543
No 65
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=61.37 E-value=13 Score=35.90 Aligned_cols=58 Identities=22% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.+|++...+.|++.+|+.++.+.+.-... +.-.++.++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998876643221 32334678889999999999999988666
No 66
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=61.06 E-value=25 Score=33.49 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
+++++.+++.|++.+|++++-+...-... +.=.+..++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 89999999999999999998763211110 1112234667888999999999999999854
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=61.04 E-value=15 Score=38.89 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred ccccccHHHHHHHHHcCCCEEEeccccccc--------ccCCC---------CCCChh--HHHHHHHHHHHHHHcCCEEE
Q 015209 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRI--------FPYGT---------GKVNWK--GVAYYNQLINYLLKRGITPY 162 (411)
Q Consensus 102 d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri--------~P~~~---------g~~n~~--gl~~y~~~i~~l~~~GI~p~ 162 (411)
|.|....+-++-+++||++++=++=...-. -|..- |.+|+. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777899999999999887433221 11100 012211 23448999999999999999
Q ss_pred EEc
Q 015209 163 ANL 165 (411)
Q Consensus 163 vtL 165 (411)
+.+
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 974
No 68
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=58.55 E-value=16 Score=39.55 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCC-C-------CCCh--hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-G-------KVNW--KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g-------~~n~--~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
+.-..+-++-+++||++++=++=-... |... | .+|+ -..+=++++|++++++||++|+.+
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVS--PQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccC--CCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 444667789999999999977632221 1110 1 1111 123558999999999999999974
No 69
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.01 E-value=41 Score=34.31 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 111 i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
++.++++|.+++-+-+-|. |+.+..+|..-+++..++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999987 543234578888999999999999999988854
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.93 E-value=71 Score=31.54 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=65.8
Q ss_pred cHHHHHHHHHcC--CCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCC---CCcHHHHHh---c
Q 015209 107 YKEDVDIMANLN--FDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y 178 (411)
Q Consensus 107 y~eDi~lm~~lG--~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~---y 178 (411)
.+|-++.+++.| ++++=+.+.|.+-.-.++=.+|.+..---..+|++|+++|+++++.+.-+ +.|..-+.+ |
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 467788889999 56677778887432111124454444446899999999999988876533 223221110 0
Q ss_pred ------------------CC---CCChHHHHHHHHHHHHHHHHhCCCcc-eEEecccc
Q 015209 179 ------------------NG---LLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEP 214 (411)
Q Consensus 179 ------------------gG---w~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEP 214 (411)
++ +.||+..+.|.+..+.+.+ .| |. +|.=+||+
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 01 5688888888777776544 33 45 46668886
No 71
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=57.80 E-value=34 Score=37.56 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=57.3
Q ss_pred cccccHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc----HH
Q 015209 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EA 173 (411)
Q Consensus 103 ~y~~y~eD-----i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P----~~ 173 (411)
.|.+|.+| ++..++.|++.+|+..+.+.+ +-....|+..++.|....+++.+=+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 35666666 999999999999999655433 234556666777777655444332233 21
Q ss_pred HHHh----------------cCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccch
Q 015209 174 LEKK----------------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 174 l~~~----------------ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 217 (411)
+.+. ..|-..|. ...+.++.+-+++ +.--...+-|-..+-
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 1111 13445544 4555566666666 332356788877653
No 72
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.61 E-value=50 Score=33.48 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 109 EDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 109 eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
-+++.+|++|.++..|=+-|. |+++-.+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 357899999999999999997 565456888889999999999999999999888766544
No 73
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=57.52 E-value=2.1e+02 Score=28.64 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.1
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCC
Q 015209 130 RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (411)
Q Consensus 130 ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 168 (411)
+..|...+-++.+-+..++++.+.++++|-+.++=|+|.
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 344443356788889999999999999999999999994
No 74
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.40 E-value=50 Score=33.44 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=49.3
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 111 i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
++.+|++|.++..|=+-|. |+++..+|..-.++.+++.++|++.+|--++=+..+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999999997 565456889889999999999999999888877655544
No 75
>PLN02784 alpha-amylase
Probab=56.95 E-value=26 Score=39.96 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHcCCCEEEecccccccccCCCCC-----CChh--HHHHHHHHHHHHHHcCCEEEEEc
Q 015209 102 DQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK-----VNWK--GVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 102 d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~-----~n~~--gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.+|....+.++.+++||++++=++=......+.|... +|.. ..+=++++|++|+++||++++.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999999999998875444333333211 1211 23458999999999999999973
No 76
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=56.08 E-value=19 Score=39.11 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCCCC--------CCh--hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGK--------VNW--KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~--------~n~--~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
+.-..+.++-+++||++++=++=-+.. |..+.. +|+ -..+-++++|+++.++||++++.+
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 445678899999999999987632211 211111 111 123558999999999999999875
No 77
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=55.60 E-value=22 Score=34.79 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
.+|++...+.|++.+|+.++=|...-..+ +.=-.+.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 78999999999999999886443322211 222346688899999999999999999884
No 78
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=53.80 E-value=1e+02 Score=29.72 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC--CCCCcHHHHHh------c-
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--HYDLPEALEKK------Y- 178 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~--H~d~P~~l~~~------y- 178 (411)
.+|++..++.|++.+|+.++.+.+ .-..+.++.+++.|+++.+++. +...|..+.+. .
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG 154 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC
Confidence 699999999999999998776643 1247789999999999988873 22334333211 0
Q ss_pred ---------CCCCChHHHHHHHHHHHHHHHHhCC
Q 015209 179 ---------NGLLSKRVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 179 ---------gGw~~~~~~~~F~~ya~~~~~~fgd 203 (411)
-|-.. ++...++++.+.++++.
T Consensus 155 ~d~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 155 ADCVYVTDSAGAML---PDDVRERVRALREALDP 185 (263)
T ss_pred CCEEEEcCCCCCcC---HHHHHHHHHHHHHhCCC
Confidence 23333 34566666666667754
No 79
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=53.31 E-value=21 Score=36.46 Aligned_cols=60 Identities=17% Similarity=0.074 Sum_probs=47.2
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
.++|++.+.+.|++.+|+.++-|.+.-+.. +.-..+.++-..+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 589999999999999999887766543321 322345678889999999999999988874
No 80
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=53.15 E-value=95 Score=31.68 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCCCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHh
Q 015209 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKK 177 (411)
Q Consensus 98 ~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ 177 (411)
=+|.=||+ |+.-+. ..+.|++.+|+. + |++-. -+..+.+++.++++|+..=+...|-.++.-+.++
T Consensus 75 lVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 75 LVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 34555665 444333 357899999975 3 55543 3578999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHH
Q 015209 178 YNGLLSKRVVKDFADYADFCFK 199 (411)
Q Consensus 178 ygGw~~~~~~~~F~~ya~~~~~ 199 (411)
||+-+.+..++--.++++.|-+
T Consensus 141 yg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 8765556677777777777643
No 81
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=53.03 E-value=89 Score=32.10 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=58.0
Q ss_pred HHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHH
Q 015209 115 ANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYA 194 (411)
Q Consensus 115 ~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya 194 (411)
.+.|++.+|+. + |++... -+..+.+++.++++|+..=+...|-.++.-+.++||+-+.+..++--.+++
T Consensus 98 ~~~G~~~iRIN---------P-GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~ 166 (360)
T PRK00366 98 AEAGADALRIN---------P-GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHA 166 (360)
T ss_pred HHhCCCEEEEC---------C-CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57899999764 3 655210 256899999999999999999999999999999996645556777777777
Q ss_pred HHHHH
Q 015209 195 DFCFK 199 (411)
Q Consensus 195 ~~~~~ 199 (411)
+.+-+
T Consensus 167 ~~le~ 171 (360)
T PRK00366 167 KILEE 171 (360)
T ss_pred HHHHH
Confidence 77644
No 82
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.00 E-value=1.3e+02 Score=30.49 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--CCCCCcHHHHHh------c-
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--YHYDLPEALEKK------Y- 178 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--~H~d~P~~l~~~------y- 178 (411)
.+|++...+.|++.+|+....+.. +--.+.|+.+++.|++..+.+ .|...|..+.+. +
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC
Confidence 689999999999999998755432 225789999999999988776 454455544322 1
Q ss_pred ---------CCCCChHHHHHHHHHHHHHHHHhCCCcc-eEEeccccc
Q 015209 179 ---------NGLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPR 215 (411)
Q Consensus 179 ---------gGw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEP~ 215 (411)
.|-.. ++...++++.+-+++++.++ .+..-|-..
T Consensus 157 a~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 200 (333)
T TIGR03217 157 ADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLS 200 (333)
T ss_pred CCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCc
Confidence 23333 44666777777777764333 244555444
No 83
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.83 E-value=77 Score=31.04 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=38.1
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
-++|++...+.|++.+|+++..+. ++--.+.++..++.|+++.+++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 478999999999999999875543 3556888999999999988766
No 84
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=52.40 E-value=41 Score=32.78 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=39.7
Q ss_pred cHHHHHHHHHcCCCEEEeccccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 107 YKEDVDIMANLNFDAYRFSISWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~-ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
-+|.++.|+++|++.+-++++-+ ++.+.-.+.- .++.+.+.++.++++||...+++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 38999999999999999998821 1222211222 34567889999999999865543
No 85
>PRK14706 glycogen branching enzyme; Provisional
Probab=51.76 E-value=55 Score=36.26 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHcCCCEEEec-c-------cccccccCCCCCCCh--hHHHHHHHHHHHHHHcCCEEEEEc--CCCC----------
Q 015209 112 DIMANLNFDAYRFS-I-------SWSRIFPYGTGKVNW--KGVAYYNQLINYLLKRGITPYANL--YHYD---------- 169 (411)
Q Consensus 112 ~lm~~lG~~~~Rfs-I-------sW~ri~P~~~g~~n~--~gl~~y~~~i~~l~~~GI~p~vtL--~H~d---------- 169 (411)
+-+|+||++++-+. | +|-- .|..--.++. -..+=++.+|++|.++||++++.+ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 56899999998754 2 1210 0000000110 113447999999999999999874 3432
Q ss_pred -CcHH-HHHhcC----CC-------CChHHHHHHHHHHHHHHHHhC
Q 015209 170 -LPEA-LEKKYN----GL-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 170 -~P~~-l~~~yg----Gw-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
.|.+ ..+... .| .++++.+.+.+=++.-+++|+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 000001 12 257788888888998899887
No 86
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=51.46 E-value=92 Score=34.22 Aligned_cols=99 Identities=11% Similarity=0.116 Sum_probs=59.3
Q ss_pred ccccHHHH-HHHHHcCCCEEEec-cccccccc-CCCC-----CCC--hhHHHHHHHHHHHHHHcCCEEEEEcC--CCCC-
Q 015209 104 YHRYKEDV-DIMANLNFDAYRFS-ISWSRIFP-YGTG-----KVN--WKGVAYYNQLINYLLKRGITPYANLY--HYDL- 170 (411)
Q Consensus 104 y~~y~eDi-~lm~~lG~~~~Rfs-IsW~ri~P-~~~g-----~~n--~~gl~~y~~~i~~l~~~GI~p~vtL~--H~d~- 170 (411)
|.-..+.+ +-+++||++++=+. |....-.- .|.. .++ .-..+=++++|++|.++||++|+.+- |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 33344564 88999999999884 43321100 0100 011 01123479999999999999999743 5321
Q ss_pred ----------cHHHHH-----hcCCC-------CChHHHHHHHHHHHHHHHHhC
Q 015209 171 ----------PEALEK-----KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 171 ----------P~~l~~-----~ygGw-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 01112 357888999999999999887
No 87
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=51.36 E-value=38 Score=34.45 Aligned_cols=109 Identities=21% Similarity=0.387 Sum_probs=58.9
Q ss_pred ccccHHHHHHHHHcCCCEEEe--------------------------c----ccccccccCC--CCCCCh----hHHHHH
Q 015209 104 YHRYKEDVDIMANLNFDAYRF--------------------------S----ISWSRIFPYG--TGKVNW----KGVAYY 147 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~Rf--------------------------s----IsW~ri~P~~--~g~~n~----~gl~~y 147 (411)
+.+|++.|+.|+=-|+|..=- + +.|.|+.=-. .|.+.. +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 577888888888888885431 1 2455543211 033322 223445
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcC--------CC--------CChHHHHHHHHHHHHH----HHHhCCCcce
Q 015209 148 NQLINYLLKRGITPYANLYHYDLPEALEKKYN--------GL--------LSKRVVKDFADYADFC----FKTFGDRVKN 207 (411)
Q Consensus 148 ~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~yg--------Gw--------~~~~~~~~F~~ya~~~----~~~fgd~V~~ 207 (411)
+++++++++.||+|++--+---.|..+.++|. .| ++| .-+.|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 78999999999999999888888999998872 23 222 235666666655 55688 3344
Q ss_pred EE--ecccc
Q 015209 208 WM--TFNEP 214 (411)
Q Consensus 208 w~--t~NEP 214 (411)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 43 78884
No 88
>PRK09505 malS alpha-amylase; Reviewed
Probab=51.28 E-value=31 Score=38.50 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCEEEecccccccc-----------c----CCC-----CCCCh--hHHHHHHHHHHHHHHcCCEEEEE
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIF-----------P----YGT-----GKVNW--KGVAYYNQLINYLLKRGITPYAN 164 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~-----------P----~~~-----g~~n~--~gl~~y~~~i~~l~~~GI~p~vt 164 (411)
..+-++.+++||++++=++=-...+. | .|. -.+|+ -..+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998874333321 1 010 01222 13456899999999999999997
Q ss_pred c
Q 015209 165 L 165 (411)
Q Consensus 165 L 165 (411)
+
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 4
No 89
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=50.92 E-value=95 Score=31.29 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCC-----cHHHHHh---c---------------C------CCCChHHHHHHHHHHHHHH
Q 015209 148 NQLINYLLKRGITPYANLYHYDL-----PEALEKK---Y---------------N------GLLSKRVVKDFADYADFCF 198 (411)
Q Consensus 148 ~~~i~~l~~~GI~p~vtL~H~d~-----P~~l~~~---y---------------g------Gw~~~~~~~~F~~ya~~~~ 198 (411)
..+|++|+++|++.++.++-+-. |..-+.+ | . .+.|++..+.|.+..+...
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 67999999999998887764422 2221111 0 0 2678999999998888776
Q ss_pred HHhCC-CcceEEecccccchh
Q 015209 199 KTFGD-RVKNWMTFNEPRVVA 218 (411)
Q Consensus 199 ~~fgd-~V~~w~t~NEP~~~~ 218 (411)
...+. -+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 54433 346799999998653
No 90
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.90 E-value=55 Score=32.39 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCC-CCCcHHHHHhcCCCCC
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLS 183 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~d~P~~l~~~ygGw~~ 183 (411)
.-.+|+++..+.|++.+|+.++=+...-..+ +.=.++.++-..+.|+..+++|+++..++.. |..| +.|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC
Confidence 3589999999999999999986554432211 3334467888999999999999998876653 4444 233332
Q ss_pred hHHHHHHHHHHHHHHH
Q 015209 184 KRVVKDFADYADFCFK 199 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~ 199 (411)
.+.+.++++.+.+
T Consensus 154 ---~~~~~~~~~~~~~ 166 (287)
T PRK05692 154 ---PEAVADVAERLFA 166 (287)
T ss_pred ---HHHHHHHHHHHHH
Confidence 4566666666654
No 91
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=50.52 E-value=23 Score=38.11 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccc-cCCC-----CCCCh--hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISWSRIF-PYGT-----GKVNW--KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW~ri~-P~~~-----g~~n~--~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.-..+-++-+++||++++=++=-.+.-. ..|. -.+|+ -..+=++++|+++.++||++|+.+
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3356668999999999987662111100 0010 02222 123558999999999999999974
No 92
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.48 E-value=52 Score=33.62 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
++|++.+.+.|++.+|+.++-|.+.-... +.=..+.++-..+.|+.+++.|+++.+++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 89999999999999999998775433221 222345678889999999999999887764
No 93
>PRK14705 glycogen branching enzyme; Provisional
Probab=50.12 E-value=93 Score=37.16 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=55.1
Q ss_pred HHHHHHcCCCEEEec-c-------cccccccCCCCCCC--hhHHHHHHHHHHHHHHcCCEEEEEc--CCCCCcHHHHHhc
Q 015209 111 VDIMANLNFDAYRFS-I-------SWSRIFPYGTGKVN--WKGVAYYNQLINYLLKRGITPYANL--YHYDLPEALEKKY 178 (411)
Q Consensus 111 i~lm~~lG~~~~Rfs-I-------sW~ri~P~~~g~~n--~~gl~~y~~~i~~l~~~GI~p~vtL--~H~d~P~~l~~~y 178 (411)
++-+|+||++++-+. | +|- -.|.+--.++ .-..+=++.+|++|.++||.+|+.+ .|+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 688999999999755 2 241 1111100000 0113347999999999999999974 3542111211111
Q ss_pred ----------------CC-------CCChHHHHHHHHHHHHHHHHhC
Q 015209 179 ----------------NG-------LLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 179 ----------------gG-------w~~~~~~~~F~~ya~~~~~~fg 202 (411)
.. +.++++.+.+.+=+...+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 3356788888888888888887
No 94
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=50.07 E-value=51 Score=33.74 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=48.1
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
-.+|++...++|++.+++.++=|...-..+ +.=-++.++.+.++|+.++++|+++.+++.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 589999999999999999986665543322 344567888999999999999999977664
No 95
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=49.90 E-value=37 Score=37.97 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=39.4
Q ss_pred HHHHHHcCCCEEE----ecccccccccCC-C----C-------------CCCh---hHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 111 VDIMANLNFDAYR----FSISWSRIFPYG-T----G-------------KVNW---KGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 111 i~lm~~lG~~~~R----fsIsW~ri~P~~-~----g-------------~~n~---~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
|+-+|++|++++. +++.+.+...+. . | ..++ ..++=+++||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999999 345555444321 0 1 0122 247779999999999999999873
No 96
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=49.49 E-value=87 Score=31.69 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCc--------HHHHH---h----------c--------C---CCCChHHHHHHHHHHH
Q 015209 148 NQLINYLLKRGITPYANLYHYDLP--------EALEK---K----------Y--------N---GLLSKRVVKDFADYAD 195 (411)
Q Consensus 148 ~~~i~~l~~~GI~p~vtL~H~d~P--------~~l~~---~----------y--------g---Gw~~~~~~~~F~~ya~ 195 (411)
.++|++|+++|++.++.+.-+-.+ ..-+. . | + .++|++..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999988877544222 22111 0 1 1 2678888888877777
Q ss_pred HHHHHhCCCcceEEecccccc
Q 015209 196 FCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 196 ~~~~~fgd~V~~w~t~NEP~~ 216 (411)
.+...+|= .-+|.=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 66655432 346889999964
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.48 E-value=62 Score=31.58 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
.+|++...+.|++.+|+++..+ .++-..++++.+++.|+++.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5899999999999999987443 2466789999999999999998864
No 98
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.30 E-value=66 Score=34.08 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc----HHHH---Hh---
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALE---KK--- 177 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P----~~l~---~~--- 177 (411)
++|++...+.|++.+|+.++-+.+. -..+.|+..++.|+++.+++..-+-| ..+. ++
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5677999999999999998665441 15668899999999888777665555 2211 11
Q ss_pred ----------cCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 178 ----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 178 ----------ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
..|...|. ...+.++.+-++++ .--.+.+-|-..+
T Consensus 166 ~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 166 MGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred cCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 14566655 44556666666775 3335667777665
No 99
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.03 E-value=96 Score=30.76 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=69.9
Q ss_pred cHHHHHHHHHcCC--CEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCC---cHHHH------
Q 015209 107 YKEDVDIMANLNF--DAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEALE------ 175 (411)
Q Consensus 107 y~eDi~lm~~lG~--~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~---P~~l~------ 175 (411)
..+-++.+++.|+ +++=+.+.|..-. ++=.+|.+..---.+++++|+++|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4566788888884 5777777885421 222455544445688999999999998887653211 21111
Q ss_pred ---HhcC----------C------CCChHHHHHHHHHHHHHHHHhCCCcceEEeccccc
Q 015209 176 ---KKYN----------G------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (411)
Q Consensus 176 ---~~yg----------G------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 215 (411)
++-| | ++||+..+.|.+..+.+....|= --.|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 67899999999988888877642 33588899997
No 100
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.65 E-value=1.2e+02 Score=30.14 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCC--CC--CCChhHHHHHHHHHHHHHHcCCEEEEEcCCC---CCcHHH--HH
Q 015209 108 KEDVDIMANLNF--DAYRFSISWSRIFPYG--TG--KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEAL--EK 176 (411)
Q Consensus 108 ~eDi~lm~~lG~--~~~RfsIsW~ri~P~~--~g--~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---d~P~~l--~~ 176 (411)
.+-++.+++.|+ +++=+++.|......+ .| .+|.+-.---.++|++|+++|++.++.+.-+ +.|..- .+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344555555554 4555666664332211 11 2333333334789999999999998887643 334321 11
Q ss_pred h-c-------------------C---CCCChHHHHHHHHHHHHHHHHhCCCcc-eEEecccccch
Q 015209 177 K-Y-------------------N---GLLSKRVVKDFADYADFCFKTFGDRVK-NWMTFNEPRVV 217 (411)
Q Consensus 177 ~-y-------------------g---Gw~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEP~~~ 217 (411)
+ | + .++||+..+.|.+..+.. +..-|. +|.=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 1 1 0 256888888887776664 223344 58899999654
No 101
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.60 E-value=62 Score=33.31 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
++|++.+.+.|++.+|++++-+.+.-+.. +.--++.++-..+.++.+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 88999999999999999997766533221 333456788899999999999999988753
No 102
>PRK10785 maltodextrin glucosidase; Provisional
Probab=47.68 E-value=36 Score=37.29 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHcCCCEEEeccc-------------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 105 HRYKEDVDIMANLNFDAYRFSIS-------------WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIs-------------W~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.-..+-++-+++||++++=++=- +-+|.|.= | ..+=++++|+++.++||++|+.+
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 33567789999999999987621 11222221 2 23458999999999999999975
No 103
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=47.22 E-value=85 Score=31.80 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCEEEEEcCCC-CCcHHHHH--hcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccchhcc
Q 015209 148 NQLINYLLKRGITPYANLYHY-DLPEALEK--KYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAAL 220 (411)
Q Consensus 148 ~~~i~~l~~~GI~p~vtL~H~-d~P~~l~~--~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~ 220 (411)
++++++|++.|++.++.+.-+ ..-..+.. .+-.|.|++..+.|.+..+.+.+ .| -.-.|+=+|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccCC
Confidence 789999999999987765411 10000000 01236788888877666554432 22 22379999999977543
No 104
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=47.21 E-value=97 Score=31.43 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 110 DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 110 Di~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
+++.+|++|.++..|=+-|. |+++-.+|..-.++.+++.++|++.||--++=+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889999999999999886 444356888889999999999999999999888766654
No 105
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=46.93 E-value=1.4e+02 Score=29.84 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCEEEEEcCCC---CCcHHHHHh---c--------------CC------CCChHHHHHHHHH
Q 015209 140 NWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEALEKK---Y--------------NG------LLSKRVVKDFADY 193 (411)
Q Consensus 140 n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~---y--------------gG------w~~~~~~~~F~~y 193 (411)
|.+..---.++|++|+++|++.++.+.-+ +.+.+-+-+ | +| |+||+..+.|.+.
T Consensus 61 d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 61 DPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 33333335789999999999988876422 122211100 0 11 5678877777665
Q ss_pred HHHHHHHhCCCcceEEecccccchh
Q 015209 194 ADFCFKTFGDRVKNWMTFNEPRVVA 218 (411)
Q Consensus 194 a~~~~~~fgd~V~~w~t~NEP~~~~ 218 (411)
.+..+...|= --+|+=+|||....
T Consensus 141 ~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 141 LKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHhhcCCC-cEEEecCCCCCccC
Confidence 5544433322 34689999998653
No 106
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.27 E-value=1.5e+02 Score=29.56 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCC-----cHHHHHh---c---------------------CCCCChHHHHHHHHHHHHH
Q 015209 147 YNQLINYLLKRGITPYANLYHYDL-----PEALEKK---Y---------------------NGLLSKRVVKDFADYADFC 197 (411)
Q Consensus 147 y~~~i~~l~~~GI~p~vtL~H~d~-----P~~l~~~---y---------------------gGw~~~~~~~~F~~ya~~~ 197 (411)
-.++|+.|+++|++.++.+.-+-. +...+.. | -.|+||+..+.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 478999999999998876643311 2221111 0 1267889999988877776
Q ss_pred HHHhCCCcceEEecccccch
Q 015209 198 FKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 198 ~~~fgd~V~~w~t~NEP~~~ 217 (411)
....|= .-.|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 544432 3368899999643
No 107
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=46.07 E-value=37 Score=38.89 Aligned_cols=55 Identities=24% Similarity=0.227 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHcCCCEEEecc---------------cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 105 HRYKEDVDIMANLNFDAYRFSI---------------SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsI---------------sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
....+-+.-+++||++++=+|= ++.+|.|+- | +.+=+++++++++++||.+|+.+
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 4467888999999999987653 333444443 3 23558999999999999999975
No 108
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=45.53 E-value=90 Score=32.36 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.|++||++.+++|++.|=+.|- .. ..++. +....+++...+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999999885 11 23443 556888999999999988877
No 109
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=45.40 E-value=1.7e+02 Score=28.47 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC-CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYG-TGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~-~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 168 (411)
+.+++.+++.|++.+|+.++=|...-.. -|.-.++.++...+.++.+++.|+++.++..++
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3689999999999999987644332221 133335678889999999999999998865554
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=93 Score=31.78 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHH
Q 015209 109 EDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVK 188 (411)
Q Consensus 109 eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~ 188 (411)
.-|++|.+.|++-+=.|+ ++|++ .+...++.+.++++.+.+.|++++|... |+-|.+ -||.- +.++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HHHH
Confidence 447889999998777665 34444 2335788999999999999999999994 887765 35532 3345
Q ss_pred HHHHH
Q 015209 189 DFADY 193 (411)
Q Consensus 189 ~F~~y 193 (411)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55444
No 111
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=44.38 E-value=90 Score=35.43 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=63.0
Q ss_pred HcCCCEEEeccc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC---CCCcHH--HHHh-c----------
Q 015209 116 NLNFDAYRFSIS-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH---YDLPEA--LEKK-Y---------- 178 (411)
Q Consensus 116 ~lG~~~~RfsIs-W~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H---~d~P~~--l~~~-y---------- 178 (411)
++=++++++++. |.+ .-+.=.+|+.-.---+.||+.|++.||+.++.+.. -|.|.- +.++ |
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cCcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 356789999995 876 11112344333333469999999999999988753 233332 1111 0
Q ss_pred -----------CCCCChHHHHHHHHHHHHHHHHhCCC--cceEEecccccchhcc
Q 015209 179 -----------NGLLSKRVVKDFADYADFCFKTFGDR--VKNWMTFNEPRVVAAL 220 (411)
Q Consensus 179 -----------gGw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~~~~~ 220 (411)
-.++||+..+.|.+ ...+.+.|. .-+|.=+|||......
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccc
Confidence 11678999998887 333434442 4579999999976543
No 112
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=44.36 E-value=43 Score=37.79 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=57.1
Q ss_pred cccccHHH-HHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 103 QYHRYKED-VDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 103 ~y~~y~eD-i~lm~~lG~~~~RfsIsW~---------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
.|.-..++ ++.+|+||++++-+.=-.. .+.|.- |. .+=++++|++|.++||.+++.+-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 34443333 8999999999998762211 111111 22 24479999999999999999854
Q ss_pred C--CCC-------------cHHHHHhcCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 015209 167 H--YDL-------------PEALEKKYNG----L-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 167 H--~d~-------------P~~l~~~ygG----w-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
+ ..- +.|+...-.| | .++++.+.+.+=++..+++|+
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 211 1222210011 2 246677777888888888875
No 113
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=42.66 E-value=83 Score=33.10 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred cHHHHHHHHHcCCCEEEecc-cccc-cccCCCCCCChhHHHHHHHHHHHHHHcC-CEEEEEcCCCCCcHHHHHhcCCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSI-SWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRG-ITPYANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI-sW~r-i~P~~~g~~n~~gl~~y~~~i~~l~~~G-I~p~vtL~H~d~P~~l~~~ygGw~~ 183 (411)
-+|.+++|+++|+|.+-++| |-+. +...- |.... .+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~--~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg----------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD--REEVLARLEELVARDRAAVVCDLI-FGLPG----------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC--HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC-----------
Confidence 36889999999999887776 3321 22111 32221 244567889999999 66777775 55662
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEecccccchhcccccCCccC
Q 015209 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA 228 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~~~ 228 (411)
++.+.|.+=.+.+.+-=-+.|..+...-||+.....-+..|.++
T Consensus 227 -qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 -QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12444555555554433367888888888886444334445443
No 114
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.54 E-value=3.7e+02 Score=26.99 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=32.8
Q ss_pred ccccc---CCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 129 SRIFP---YGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 129 ~ri~P---~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
.+..| ...+-+|.+-+..++++.+.++++|-..++=|+|
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h 104 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNH 104 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccC
Confidence 35555 3236788889999999999999999999999999
No 115
>PRK03705 glycogen debranching enzyme; Provisional
Probab=41.34 E-value=63 Score=35.94 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=54.4
Q ss_pred HHHHHHcCCCEEEec-c-c---------------c-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc-
Q 015209 111 VDIMANLNFDAYRFS-I-S---------------W-------SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL- 165 (411)
Q Consensus 111 i~lm~~lG~~~~Rfs-I-s---------------W-------~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL- 165 (411)
++-+|+||++++=+. | + | -.+.|.= |.-....++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 889999999999764 1 1 1 1122221 22111235568999999999999999974
Q ss_pred -CCCC-----CcH----------HH--HH--hcC---C------CCChHHHHHHHHHHHHHHHHhC
Q 015209 166 -YHYD-----LPE----------AL--EK--KYN---G------LLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 166 -~H~d-----~P~----------~l--~~--~yg---G------w~~~~~~~~F~~ya~~~~~~fg 202 (411)
.|-. -|. +. .+ .|. | +.++.+.+.+.+-++..+++||
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 3421 111 10 00 011 1 2356777777777777777776
No 116
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=41.10 E-value=1e+02 Score=33.80 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=61.2
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc----HHHHHh-----
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EALEKK----- 177 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P----~~l~~~----- 177 (411)
.++|++..++.|++.+|+..+.+.+ +-....++..+++|++..+++.+-+.| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999766543 225777788888999888876655455 221110
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccch
Q 015209 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 178 -----------ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 217 (411)
..|...|. ...+.++.+.++++ .--...+-|-..+-
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 13555554 45556666667775 22357788877653
No 117
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=41.04 E-value=62 Score=32.81 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCCh
Q 015209 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsI-sW~-ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~~ 184 (411)
+|.++.|+++|++.+-+++ +-+ ++...- |... ..+-+.+.|+.+++.|+.++ +.+. +++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg------------ 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL------------ 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC------------
Confidence 6889999999999666665 232 222221 3211 13557889999999999754 4553 55552
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEeccccc
Q 015209 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (411)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 215 (411)
++.+.|.+-.+.+.+.=-+.+..+...=||+
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 2244555555555432223454444444444
No 118
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=40.27 E-value=51 Score=37.57 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW~---------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
....+-++-+++||++++=+|=-+. +|.|+- | +.+=+++++++++++||..|+.+
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 3467888999999999997764332 333332 2 24558999999999999999975
No 119
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=39.79 E-value=1.2e+02 Score=29.79 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCC-CCCcHHHHHhcCCCCChH
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYH-YDLPEALEKKYNGLLSKR 185 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H-~d~P~~l~~~ygGw~~~~ 185 (411)
++|++...+.|++.+++.++=+...-..+ +.--.+.++...+.++.+++.|+++.+++.. |+.| +.|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC---
Confidence 78999999999999999986554322211 3233567788999999999999999887763 4444 12322
Q ss_pred HHHHHHHHHHHHHH
Q 015209 186 VVKDFADYADFCFK 199 (411)
Q Consensus 186 ~~~~F~~ya~~~~~ 199 (411)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 35566677776654
No 120
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=39.32 E-value=70 Score=33.10 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=61.2
Q ss_pred cHHHHHHHHHcCCCEEEecc-cc-cccccCCCCC-CChhHHHHHHHHHHHHHHcCCE-EEEEcCCCCCcHHHHHhcCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGK-VNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLL 182 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI-sW-~ri~P~~~g~-~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~ygGw~ 182 (411)
-+|.++.|+++|++.+-+++ |- .++...- |+ .+. +-..+.++.+++.|++ +-++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH---------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999665555 22 1121111 22 222 3456788999999998 556775 56662
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEecccccchhcccccCCc
Q 015209 183 SKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGF 226 (411)
Q Consensus 183 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~ 226 (411)
++.+.+.+=++.+.+-=-+.|..+...-||+.....-+..|.
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCC
Confidence 234455554444444333567777777788765444444444
No 121
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=38.94 E-value=1.6e+02 Score=31.33 Aligned_cols=87 Identities=18% Similarity=0.418 Sum_probs=56.2
Q ss_pred cHHH-HHHHHHcCCCEEEe-------------------------cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015209 107 YKED-VDIMANLNFDAYRF-------------------------SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGIT 160 (411)
Q Consensus 107 y~eD-i~lm~~lG~~~~Rf-------------------------sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~ 160 (411)
++.| ++++|+|.+...|+ .+.|.-.|+++ =| .+++++.|++.|.+
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~------~G---t~EF~~~~e~iGae 120 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNE------FG---THEFMDWCELIGAE 120 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccc------cc---HHHHHHHHHHhCCc
Confidence 4556 58889999999884 23333222222 12 47899999999999
Q ss_pred EEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHH--------HHHHhCC----CcceEEecccc
Q 015209 161 PYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADF--------CFKTFGD----RVKNWMTFNEP 214 (411)
Q Consensus 161 p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~--------~~~~fgd----~V~~w~t~NEP 214 (411)
|++.+.= |=...+....|.+|+.. .-+..|- .||+|.+=||-
T Consensus 121 p~~avN~------------Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 121 PYIAVNL------------GSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred eEEEEec------------CCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 9999851 21233445566666532 2344443 49999999995
No 122
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.78 E-value=2.1e+02 Score=28.21 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=80.4
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCC---cHH----------HHHhcCCCC-----C----hHHHHH
Q 015209 132 FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL---PEA----------LEKKYNGLL-----S----KRVVKD 189 (411)
Q Consensus 132 ~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~---P~~----------l~~~ygGw~-----~----~~~~~~ 189 (411)
.|...|-++++-+..++++.+.++++|-..++=|.|-.- |.. .... .... + .++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~mt~~ei~~~i~~ 142 (327)
T cd02803 64 YPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSP-GGGEPPREMTKEEIEQIIED 142 (327)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCC-CCCCCCCcCCHHHHHHHHHH
Confidence 444336788899999999999999999999999998421 100 0000 0001 1 247888
Q ss_pred HHHHHHHHHHHhCCCcceEEecccccchhcccccCCcc-CCC---CCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHH
Q 015209 190 FADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF-APG---RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQR 265 (411)
Q Consensus 190 F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~~-~Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~ 265 (411)
|++-|+.+.+.=-|-|+ +..-.||+...| .|. +++.. |.|. -|-..--...++.
T Consensus 143 ~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~y------Ggs~-------enr~r~~~eii~a 200 (327)
T cd02803 143 FAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEY------GGSL-------ENRARFLLEIVAA 200 (327)
T ss_pred HHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCccc------CCCH-------HHHHHHHHHHHHH
Confidence 99888887664223333 334456765432 232 22211 1111 1222222345666
Q ss_pred HHHHhccCCCceEEEEecCcccccCCCCHHH-HHHHHHHH
Q 015209 266 YRQKYEQKQKGRIGILLDFVWYEPLTRSKAD-NYAAQRAR 304 (411)
Q Consensus 266 ~r~~~~~~~~~kIGi~~~~~~~~P~~~~~~D-~~Aa~~~~ 304 (411)
+|+... .+..||+-++.....+...++++ +..+++..
T Consensus 201 vr~~~g--~d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 201 VREAVG--PDFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred HHHHcC--CCceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 666532 24578888886655443334444 33344433
No 123
>PRK12568 glycogen branching enzyme; Provisional
Probab=38.68 E-value=44 Score=37.56 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=57.4
Q ss_pred ccccHHH-HHHHHHcCCCEEEec-c-------cccc-----cccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcC--
Q 015209 104 YHRYKED-VDIMANLNFDAYRFS-I-------SWSR-----IFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLY-- 166 (411)
Q Consensus 104 y~~y~eD-i~lm~~lG~~~~Rfs-I-------sW~r-----i~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~-- 166 (411)
|.-..+. |+-+|+||++++-+. | +|-= ..|++. |. .+=++.+|++|.++||.+++.+-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4444444 588999999998754 2 3420 111111 33 34589999999999999999743
Q ss_pred CCCC----------cHHHHH------hcCCC-------CChHHHHHHHHHHHHHHHHhC
Q 015209 167 HYDL----------PEALEK------KYNGL-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 167 H~d~----------P~~l~~------~ygGw-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
|+.- +...+. .+..| .++++.+.+.+=++.-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 100000 01123 456778888888888888876
No 124
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.32 E-value=96 Score=29.36 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=41.6
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCC--CCCChhHHHHHHHHHHHHHHcCCEEEEE-cCCCCCc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT--GKVNWKGVAYYNQLINYLLKRGITPYAN-LYHYDLP 171 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~--g~~n~~gl~~y~~~i~~l~~~GI~p~vt-L~H~d~P 171 (411)
-..+++=+++++++|.+.+|+-..+. |... .......++..+++.+.+.+.||...+= +.+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35567778999999999998654321 1110 1112233466788888899999998774 3445444
No 125
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=38.12 E-value=1.5e+02 Score=30.86 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred cHHHHHHHHHcCCCEEEeccccccc-----------ccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC---------
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRI-----------FPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY--------- 166 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri-----------~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~--------- 166 (411)
..+-++.++++|++.+=+.--|..- +|+. .++ +.| ...+++.+++.||++=+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S~ 134 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDSD 134 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSSC
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchhH
Confidence 4566788999999998888889643 2222 112 124 68899999999999755320
Q ss_pred -CCCCcHHHHHhcC-----C-------CCChHHHHHHHHHHHHHHHHhC-CCcc
Q 015209 167 -HYDLPEALEKKYN-----G-------LLSKRVVKDFADYADFCFKTFG-DRVK 206 (411)
Q Consensus 167 -H~d~P~~l~~~yg-----G-------w~~~~~~~~F~~ya~~~~~~fg-d~V~ 206 (411)
.-..|.|+...-+ | ..+|++.+...+-...+++++| |.+|
T Consensus 135 l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 135 LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1246888643201 1 3577888888888888888887 4444
No 126
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=37.97 E-value=96 Score=30.06 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHHHHHHcC----CCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 108 KEDVDIMANLN----FDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 108 ~eDi~lm~~lG----~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.+|+++..+.| ++.+|+.++.+.+.-..+ +.=..+.++-..+.++.+++.|++..+++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 79999999999 999999876554432211 22223457778899999999999977655
No 127
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.57 E-value=2.7e+02 Score=27.73 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCC---CcHHHH--Hh-c----------------C------CCCChHHHHHHHHHHHHHH
Q 015209 147 YNQLINYLLKRGITPYANLYHYD---LPEALE--KK-Y----------------N------GLLSKRVVKDFADYADFCF 198 (411)
Q Consensus 147 y~~~i~~l~~~GI~p~vtL~H~d---~P~~l~--~~-y----------------g------Gw~~~~~~~~F~~ya~~~~ 198 (411)
-.+||++|+++|++.++.++-+- .|..-+ ++ | + .++|++..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 47899999999999988765432 222111 10 0 0 1467888888877665544
Q ss_pred HHhCCCcceEEecccccc
Q 015209 199 KTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 199 ~~fgd~V~~w~t~NEP~~ 216 (411)
...|= .-+|+=+|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 44432 346888999974
No 128
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=37.34 E-value=82 Score=32.10 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred cHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCE-EEEEcCCCCCcHHHHHhcCCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI-sW~-ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~ygGw~~ 183 (411)
-+|.+++|+++|++.+-+++ |-+ ++.-.- |... ..+-..+.++.+++.|+. +.+++. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 36889999999999666665 222 121111 2211 234567889999999998 656664 44552
Q ss_pred hHHHHHHHHHHHHHHHHhC-CCcceEEecccccchhc
Q 015209 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAA 219 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~ 219 (411)
++.+.|.+=.+.+.+ ++ +.|..+...-||+....
T Consensus 172 -qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 -ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHH
Confidence 234555555555443 44 55655555556665443
No 129
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=37.20 E-value=24 Score=26.98 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=31.5
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCC
Q 015209 129 SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY 168 (411)
Q Consensus 129 ~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~ 168 (411)
+++.|+. |.--.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5778886 65567899999999999999999 88888653
No 130
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=36.97 E-value=42 Score=40.00 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCEEEecccccccc-----cC------CCC-----CCCh--h--HHHHHHHHHHHHHHcCCEEEEEc
Q 015209 109 EDVDIMANLNFDAYRFSISWSRIF-----PY------GTG-----KVNW--K--GVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 109 eDi~lm~~lG~~~~RfsIsW~ri~-----P~------~~g-----~~n~--~--gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
+.|+-+|+||++++=+.=-..... +. |.. .+|. . ..+=+++||++|.++||++|+..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 668899999999997652111110 00 000 1111 1 34568999999999999999973
No 131
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=36.70 E-value=6.7e+02 Score=28.32 Aligned_cols=165 Identities=17% Similarity=0.095 Sum_probs=90.6
Q ss_pred HHHcCCCEEEec---c-cccccccCCCCCCChhHHHHHHHHHHHHHHc-CCEEEEEcCCCCC-----cHHHHH----hcC
Q 015209 114 MANLNFDAYRFS---I-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYANLYHYDL-----PEALEK----KYN 179 (411)
Q Consensus 114 m~~lG~~~~Rfs---I-sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~-GI~p~vtL~H~d~-----P~~l~~----~yg 179 (411)
.++-|+-.+=.. + .-.|+.|...|-++.+-++-++++.+.++++ |-..++=|.|-.- +.|... .-+
T Consensus 440 rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~ 519 (765)
T PRK08255 440 RALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEG 519 (765)
T ss_pred HHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccC
Confidence 444455544222 2 2345555544778999999999999999999 6899999998321 111100 002
Q ss_pred CCC-------------------C----hHHHHHHHHHHHHHHHHhC-CCcceEEecccccchhcccccCCccC-CC---C
Q 015209 180 GLL-------------------S----KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRVVAALGYDNGFFA-PG---R 231 (411)
Q Consensus 180 Gw~-------------------~----~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~~gy~~G~~~-Pg---~ 231 (411)
||. + .+++++|++=|+.+.+ -| |-|. +.+-.||+...|- |- +
T Consensus 520 ~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~R 589 (765)
T PRK08255 520 NWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQR 589 (765)
T ss_pred CCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCC
Confidence 221 0 1367888887776554 34 4333 3455677765432 32 2
Q ss_pred CCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEecCcccccCCCCHHHH-HHHHHH
Q 015209 232 CSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQKYEQKQKGRIGILLDFVWYEPLTRSKADN-YAAQRA 303 (411)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~~kIGi~~~~~~~~P~~~~~~D~-~Aa~~~ 303 (411)
++. . |.| +-|-+.--..+++.+|+..+ .+-.||+-++...+.+...+++|. ..++..
T Consensus 590 tD~-----y-GGs-------lenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l 647 (765)
T PRK08255 590 TDE-----Y-GGS-------LENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWVEGGNTPDDAVEIARAF 647 (765)
T ss_pred CCC-----C-CCC-------HHHHhHHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCCHHHHHHHHHHH
Confidence 221 1 112 22334444557777887643 245688888865444443445543 444443
No 132
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.66 E-value=82 Score=31.12 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
-++|++...++|++.+-+.++=|...-..+ +.=-++.++.+.++++..+++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999998876555443321 43455788999999999999999999888
No 133
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=35.65 E-value=1.2e+02 Score=32.06 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsI-sW~-ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
+|.+++|+++|++.+-+++ |-+ ++.-.-.-..+ ++.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888887 332 22211101123 35578899999999999888775 3444
No 134
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=35.60 E-value=1.3e+02 Score=29.85 Aligned_cols=62 Identities=23% Similarity=0.555 Sum_probs=44.9
Q ss_pred cHHHHHHHHHcCCCEEEeccc----ccc---cccC------------CCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 107 YKEDVDIMANLNFDAYRFSIS----WSR---IFPY------------GTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIs----W~r---i~P~------------~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+..+ =.+++++.++++||+++.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 567799999999999887776 521 1222 11345553 36999999999999999876
Q ss_pred CCCcHHH
Q 015209 168 YDLPEAL 174 (411)
Q Consensus 168 ~d~P~~l 174 (411)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 777654
No 135
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.45 E-value=47 Score=34.49 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEec-c-------------cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 109 EDVDIMANLNFDAYRFS-I-------------SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 109 eDi~lm~~lG~~~~Rfs-I-------------sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
+-++.+++||++++=++ | .+.+|-|. .-.++-.+++++++.++||+.++.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~------~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH------FGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc------cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 66789999999998554 1 11222221 2335678999999999999999986
No 136
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=34.74 E-value=1.4e+02 Score=28.34 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhC
Q 015209 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 144 l~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fg 202 (411)
.+...+.|..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999654433111 012455556667666666677776
No 137
>PLN02389 biotin synthase
Probab=34.36 E-value=1.2e+02 Score=31.32 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHcCCCEEEecccccc-cccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSR-IFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~r-i~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
.-+|.++.||++|++.|-.+++=++ +.|+-...-+ .+..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999885222 4444211122 35678899999999999876653
No 138
>PTZ00445 p36-lilke protein; Provisional
Probab=33.76 E-value=83 Score=30.10 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChh---------HHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWK---------GVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 111 i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~---------gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
++++++.|++++=+.++=.-|--...|-.++. +-.-...++.+|+++||...|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887665542211333332 344578899999999999988775
No 139
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=33.71 E-value=1.6e+02 Score=30.88 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=38.3
Q ss_pred cccccHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 103 QYHRYKED-----VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 103 ~y~~y~eD-----i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
.|++|.+| +++..+-|++.+|.- ...|. ++-...-|+..++.|-....++..
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------DAlND--~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-----------DALND--VRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-----------hhccc--hhHHHHHHHHHHhcCceeEEEEEe
Confidence 57888888 477899999999975 22332 234567788888888888887763
No 140
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=33.20 E-value=1.8e+02 Score=30.46 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCEEEecc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHH--HHHhcCCCC
Q 015209 108 KEDVDIMANLNFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEA--LEKKYNGLL 182 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsI--sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~--l~~~ygGw~ 182 (411)
.+|+..+.++.--.-|+++ .|. .+|.+.++ +.++++||..- +...-|..|+. -.=++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd--------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD--------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC--------cCCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 6788888887766667664 782 23654444 88999999988 66655766632 111236676
Q ss_pred Ch--HHHHHHHHHHHHH---HHHhCCC-cceEE
Q 015209 183 SK--RVVKDFADYADFC---FKTFGDR-VKNWM 209 (411)
Q Consensus 183 ~~--~~~~~F~~ya~~~---~~~fgd~-V~~w~ 209 (411)
|| ++.+...+....| .++.|.+ |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 64 5677777777776 5566654 44453
No 141
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.02 E-value=2.3e+02 Score=24.81 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHcCCCEEEeccc-cccc-ccCCCCCCChhHHHHHHHHHHHHHHcC-CEEEEEc
Q 015209 105 HRYKEDVDIMANLNFDAYRFSIS-WSRI-FPYGTGKVNWKGVAYYNQLINYLLKRG-ITPYANL 165 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIs-W~ri-~P~~~g~~n~~gl~~y~~~i~~l~~~G-I~p~vtL 165 (411)
..-++.++.|++.|++.+.+|+. ++.= ...-....+ .+.+.+.|+.+++.| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 33478899999999999999985 5422 111111122 367888999999999 6554443
No 142
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=32.83 E-value=3.6e+02 Score=24.13 Aligned_cols=96 Identities=30% Similarity=0.457 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCEEEEEcCCCCCcH-HHHHh--------c--CCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccc
Q 015209 146 YYNQLINYLLKRGITPYANLYHYDLPE-ALEKK--------Y--NGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEP 214 (411)
Q Consensus 146 ~y~~~i~~l~~~GI~p~vtL~H~d~P~-~l~~~--------y--gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP 214 (411)
-.+..|++|+++|...+|-.+--++-. .++++ + |.....++++.|...+. .+|.. |
T Consensus 29 Tln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~---~~f~e---------~- 95 (173)
T KOG2836|consen 29 TLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK---TKFRE---------E- 95 (173)
T ss_pred hHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHH---HHHhh---------C-
Confidence 357889999999999999776422211 12221 0 22345567888777444 44433 2
Q ss_pred cchhcccccCCccCCCCCCcCCCCccCCCCCChHHHHHHHHHHH---HHHHHHHHHHHhc
Q 015209 215 RVVAALGYDNGFFAPGRCSKAFGNCTVGNSATEPYIVAHNLILS---HAAAVQRYRQKYE 271 (411)
Q Consensus 215 ~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llA---Ha~av~~~r~~~~ 271 (411)
||.|-. ++|-.|- ..++..++--++.+ .-.||+.+|++.+
T Consensus 96 --------------p~~cva--vhcvagl-grapvlvalalie~gmkyedave~ir~krr 138 (173)
T KOG2836|consen 96 --------------PGCCVA--VHCVAGL-GRAPVLVALALIEAGMKYEDAVEMIRQKRR 138 (173)
T ss_pred --------------CCCeEE--EEeeccc-CcchHHHHHHHHHccccHHHHHHHHHHHhh
Confidence 332221 1343331 24555555555554 3458888887643
No 143
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.71 E-value=3e+02 Score=25.75 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred HHHHHH----HHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCC--CcHHHHHh---
Q 015209 108 KEDVDI----MANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANLYHYD--LPEALEKK--- 177 (411)
Q Consensus 108 ~eDi~l----m~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d--~P~~l~~~--- 177 (411)
++|++. +++.|++.+|+.++=+....... +.--.+.++...+.++.+++.|++..+++-+.. .|..+.+-
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEA 145 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHH
Confidence 556555 45699999999986655333321 333345678889999999999999999987643 23222211
Q ss_pred ---c----------CCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 178 ---Y----------NGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 178 ---y----------gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
+ -|... ++...++.+.+-+++++..-.+..-|-..+
T Consensus 146 ~~~~g~~~i~l~Dt~G~~~---P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 146 LAEAGADIIYLADTVGIMT---PEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp HHHHT-SEEEEEETTS-S----HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred HHHcCCeEEEeeCccCCcC---HHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 1 24444 346677778888888774445677776654
No 144
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.63 E-value=1.7e+02 Score=28.73 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=50.5
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHH
Q 015209 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (411)
Q Consensus 101 ~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~ 175 (411)
.+......+-.+.+|++|+..+|.+..=+|--|.+--.+-. +.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 34556667778899999999999997557766654211224 4566677778999999999987655544443
No 145
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.52 E-value=1.6e+02 Score=25.75 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCC
Q 015209 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDR 204 (411)
Q Consensus 147 y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~ 204 (411)
+.-+++.|++.|++|++.+.= --+.|.. |.|. +++..+.|.+-.+..++++|=.
T Consensus 38 l~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 577999999999999998841 1123432 5664 5677888888888888888864
No 146
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=32.47 E-value=1.1e+02 Score=31.39 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=57.6
Q ss_pred CCCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCC------hhH-HHHHHHHHHHHHHcCCEEEEEcCCCCCc
Q 015209 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVN------WKG-VAYYNQLINYLLKRGITPYANLYHYDLP 171 (411)
Q Consensus 99 ~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n------~~g-l~~y~~~i~~l~~~GI~p~vtL~H~d~P 171 (411)
+|.=||+ |+-=+.-++. ++.+|+. + |++- ... -+....+++.++++|+..=+...|-.++
T Consensus 78 VADIHFd-~~lAl~a~~~--v~kiRIN---------P-GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~ 144 (359)
T PF04551_consen 78 VADIHFD-YRLALEAIEA--VDKIRIN---------P-GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLE 144 (359)
T ss_dssp EEEESTT-CHHHHHHHHC---SEEEE----------T-TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-
T ss_pred eeecCCC-HHHHHHHHHH--hCeEEEC---------C-CcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCc
Confidence 4555665 5555555444 9999975 3 6660 011 3568999999999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHH
Q 015209 172 EALEKKYNGLLSKRVVKDFADYADFC 197 (411)
Q Consensus 172 ~~l~~~ygGw~~~~~~~~F~~ya~~~ 197 (411)
..+.++| |-.....++.-.++++.|
T Consensus 145 ~~~~~ky-~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 145 KDILEKY-GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc-cchHHHHHHHHHHHHHHH
Confidence 9999998 434445666667777755
No 147
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.46 E-value=1.6e+02 Score=28.42 Aligned_cols=76 Identities=13% Similarity=0.279 Sum_probs=49.7
Q ss_pred cccccHHHHHHHHHcCCCEEEe----------------------cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015209 103 QYHRYKEDVDIMANLNFDAYRF----------------------SISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGIT 160 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~Rf----------------------sIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~ 160 (411)
.--..+.-++++++||.+++.| ++ | +||.| .+|. +-+.+++..+++.|++
T Consensus 133 ~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GIdl---~Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 133 AIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GIDL---DNFEEIVQIALDAGVE 204 (236)
T ss_pred ceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--CccH---HhHHHHHHHHHHcCCC
Confidence 3344567799999999999884 33 3 67775 4664 7789999999999998
Q ss_pred EEEEcCCCCCcHHHHHhcCCCCChHHHHHH
Q 015209 161 PYANLYHYDLPEALEKKYNGLLSKRVVKDF 190 (411)
Q Consensus 161 p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F 190 (411)
-++ .|.-. .+-++-.|-++++-+...
T Consensus 205 kvi--PHIYs--siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 205 KVI--PHVYS--SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred eec--cccce--eccccccCCCCHHHHHHH
Confidence 653 23111 112333676776644433
No 148
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=31.93 E-value=1.4e+02 Score=28.52 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=43.9
Q ss_pred ecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhC
Q 015209 124 FSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 124 fsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fg 202 (411)
+.+.|..+.++|.-.... .....+.+++.++++|+++++.+..+....... -..++...+.|++=+-..+++||
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 344566665554211111 123467889999999999999997654432111 12356666777666666666665
No 149
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=30.87 E-value=3e+02 Score=27.66 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCEEEEEcCCC-----CCcHHHHHh-------------c--------C---CCCChHHHHHHHHHHHHHH
Q 015209 148 NQLINYLLKRGITPYANLYHY-----DLPEALEKK-------------Y--------N---GLLSKRVVKDFADYADFCF 198 (411)
Q Consensus 148 ~~~i~~l~~~GI~p~vtL~H~-----d~P~~l~~~-------------y--------g---Gw~~~~~~~~F~~ya~~~~ 198 (411)
.+++++|+++|++.++...-+ +.|..-+.+ | + .|+|++..+.|.+.-+.+.
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 789999999999987654322 123222111 0 1 2678888888877666554
Q ss_pred HHhCCCcc-eEEecccccch
Q 015209 199 KTFGDRVK-NWMTFNEPRVV 217 (411)
Q Consensus 199 ~~fgd~V~-~w~t~NEP~~~ 217 (411)
..-|+ .|+=+|||..+
T Consensus 147 ---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 ---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred ---hCCCceEeecCCCcccc
Confidence 23344 58899999865
No 150
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=30.79 E-value=2.2e+02 Score=32.47 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCC--EEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcC---CCCCc-----------H
Q 015209 109 EDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLY---HYDLP-----------E 172 (411)
Q Consensus 109 eDi~lm~~lG~~--~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~---H~d~P-----------~ 172 (411)
+=++.+.++|+. ..=-.|.|-.-.. +=.+|....-...++++.|.++|++-++++. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 335667777776 6666666642221 2356666666689999999999999999886 32222 0
Q ss_pred H----------HHHhcCC------CCChHHHHHHHHHHHHHHHHhCCCcc---eEEecccccchhc
Q 015209 173 A----------LEKKYNG------LLSKRVVKDFADYADFCFKTFGDRVK---NWMTFNEPRVVAA 219 (411)
Q Consensus 173 ~----------l~~~ygG------w~~~~~~~~F~~ya~~~~~~fgd~V~---~w~t~NEP~~~~~ 219 (411)
| +.+-..| ++|+++++.| ...+++|.+.|. +|+-+|||.-+..
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 0 1110122 5566555544 445668888876 6999999976553
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.72 E-value=2e+02 Score=28.56 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcCCCEEEecc----cccccccCC---CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHH
Q 015209 107 YKEDVDIMANLNFDAYRFSI----SWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI----sW~ri~P~~---~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~ 175 (411)
.++=|++|+.+|+|.+-+=+ .++. .|+- .|.+..+. ++++++.++++||+++.-+ |+|..++
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67789999999999887644 2221 2221 26676644 6999999999999999876 6665543
No 152
>PRK12677 xylose isomerase; Provisional
Probab=30.21 E-value=3.8e+02 Score=27.72 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=52.6
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCChH
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSKR 185 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~~~ 185 (411)
..|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.+.||++. +|...+..|.+ +.|++.+++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~d 105 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSND 105 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCCC
Confidence 57889999999999886632 2244432 1111111246788888999999966 55554545543 237887743
Q ss_pred --HHHHHHHHHHHH---HHHhCC
Q 015209 186 --VVKDFADYADFC---FKTFGD 203 (411)
Q Consensus 186 --~~~~F~~ya~~~---~~~fgd 203 (411)
..+.-.++.+.+ ++++|-
T Consensus 106 ~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 106 RDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 222223444433 455654
No 153
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=30.09 E-value=3.4e+02 Score=24.56 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceE
Q 015209 184 KRVVKDFADYADFCFKTFGDRVKNW 208 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w 208 (411)
....+...+|++.+-++.|-++-.+
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~~iY 123 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKVGIY 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3445666777777777666654433
No 154
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=30.00 E-value=2.5e+02 Score=29.14 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=56.7
Q ss_pred HHHHHHHHHc-CCCEEEecc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015209 108 KEDVDIMANL-NFDAYRFSI--SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 108 ~eDi~lm~~l-G~~~~RfsI--sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~ 183 (411)
.+|++.++++ ++. .++++ .|+.. .| +.++.+.++++||+.. ++...|..|.+ ++|.+.|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~~-------~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDRV-------ED------YEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCccc-------cC------HHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 6788888777 555 66665 44211 22 6788888999999987 77766655644 3477776
Q ss_pred h--HHHHHHHHHHHHH---HHHhCCC-cceE
Q 015209 184 K--RVVKDFADYADFC---FKTFGDR-VKNW 208 (411)
Q Consensus 184 ~--~~~~~F~~ya~~~---~~~fgd~-V~~w 208 (411)
+ ++.+...++.+.| ++++|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5 5667777777776 4678773 4455
No 155
>PLN02960 alpha-amylase
Probab=29.98 E-value=96 Score=35.69 Aligned_cols=94 Identities=6% Similarity=0.122 Sum_probs=58.7
Q ss_pred cccccHHH-HHHHHHcCCCEEEec-cc-------cc-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc-
Q 015209 103 QYHRYKED-VDIMANLNFDAYRFS-IS-------WS-------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL- 165 (411)
Q Consensus 103 ~y~~y~eD-i~lm~~lG~~~~Rfs-Is-------W~-------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL- 165 (411)
.|.-..+. ++-+++||++++-+. |. |- .+.|.- |. .+=++.+|++|.++||.+++.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 899999999998865 21 21 111110 22 2347999999999999999986
Q ss_pred -CCCCC--c--HHHHHh-------------cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 015209 166 -YHYDL--P--EALEKK-------------YNGL-------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 166 -~H~d~--P--~~l~~~-------------ygGw-------~~~~~~~~F~~ya~~~~~~fg 202 (411)
.|+.. + .+..+. +..| .++++.+.+.+=++..+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34321 1 111000 0123 246778888888888888887
No 156
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=29.74 E-value=2.1e+02 Score=31.05 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCEEEecc-c-ccccccC-CCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCCh
Q 015209 108 KEDVDIMANLNFDAYRFSI-S-WSRIFPY-GTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsI-s-W~ri~P~-~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~ 184 (411)
+|.+++|+++|++.+-+++ | -.+++-. ++| .+ .+-..+.++.+++.|++..+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 6889999999999777776 2 2233221 112 12 34457788899999998777775 56662
Q ss_pred HHHHHHHHHHHHHHH--HhC-CCcceEEecccccchhcccccCCccCCC
Q 015209 185 RVVKDFADYADFCFK--TFG-DRVKNWMTFNEPRVVAALGYDNGFFAPG 230 (411)
Q Consensus 185 ~~~~~F~~ya~~~~~--~fg-d~V~~w~t~NEP~~~~~~gy~~G~~~Pg 230 (411)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|+.....-|..|.+.|-
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224455665666665 354 5777777766776555444666666553
No 157
>PRK07094 biotin synthase; Provisional
Probab=28.91 E-value=1e+02 Score=30.50 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 106 RYKEDVDIMANLNFDAYRFSIS-W-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIs-W-~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.-+|+++.|+++|++.+-++++ - +++...-....+ .+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4579999999999999998873 3 233332111122 3557889999999999865544
No 158
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=28.83 E-value=2.5e+02 Score=25.95 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCCCccccccHHHHHHHHHcCCCEEEecccccccccCCC-----CCCCh---hHHHH---HHHHHHHHHHcCCEEEEEcC
Q 015209 98 DVSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-----GKVNW---KGVAY---YNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 98 ~~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-----g~~n~---~gl~~---y~~~i~~l~~~GI~p~vtL~ 166 (411)
|.|-.|| |+|.++.++++|++...+|-.=....|+-+ |..+. +.|.. ..+.|.+..++|. |++..+
T Consensus 6 d~aF~f~--y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~-pilgIC 82 (198)
T cd03130 6 DEAFNFY--YPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG-PIYAEC 82 (198)
T ss_pred cCccccc--cHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC-CEEEEc
Confidence 3456666 899999999999998887752111222211 33333 23322 2344555556774 888887
Q ss_pred C
Q 015209 167 H 167 (411)
Q Consensus 167 H 167 (411)
+
T Consensus 83 g 83 (198)
T cd03130 83 G 83 (198)
T ss_pred c
Confidence 5
No 159
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.75 E-value=2.4e+02 Score=28.73 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=55.3
Q ss_pred cHHHHHHHHHcCCCEEEecc-c-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSI-S-WSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI-s-W~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~ 183 (411)
-+|.+++|+++|++.+-+++ + -.++...-....+ .+-..+.++.+++.|+..+ +.+. +++|.
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg----------- 163 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG----------- 163 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC-----------
Confidence 37889999999999776666 2 2233322112223 3557789999999999743 4442 45552
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEecccccchh
Q 015209 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVA 218 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~ 218 (411)
++.+.|.+=.+.+.+.=-+.|..+...-||....
T Consensus 164 -qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 164 -QTIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred -CCHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 1234555555554332223455554445666443
No 160
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=28.58 E-value=2.6e+02 Score=28.24 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCCh
Q 015209 108 KEDVDIMANLNFDAYRFSI-SWS-RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLSK 184 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsI-sW~-ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~~ 184 (411)
+|.++.|+++|+|.+-++| |-+ ++...- |... ..+-..+.++.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6899999999999666666 343 222221 3321 13456889999999999755 6664 55552
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEeccccc
Q 015209 185 RVVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (411)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 215 (411)
++.+.|.+-.+.+.+-=-+.|..+...=||+
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2345566655555442224455544444554
No 161
>PLN02229 alpha-galactosidase
Probab=28.51 E-value=1.3e+02 Score=31.69 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=36.3
Q ss_pred cHHHHHHH-----HHcCCCEEEecccccccccCCCCCC--ChhHHH-HHHHHHHHHHHcCCEEEE
Q 015209 107 YKEDVDIM-----ANLNFDAYRFSISWSRIFPYGTGKV--NWKGVA-YYNQLINYLLKRGITPYA 163 (411)
Q Consensus 107 y~eDi~lm-----~~lG~~~~RfsIsW~ri~P~~~g~~--n~~gl~-~y~~~i~~l~~~GI~p~v 163 (411)
.++-.+.| +++|.+.+=+.--|..-.-+..|.+ |++-+- =...+.|.+.++|++.=+
T Consensus 82 i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 82 IKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred HHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEE
Confidence 45555654 8999999999999963221222433 332111 168899999999998543
No 162
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.02 E-value=71 Score=34.26 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHcCCCEEEecccccccccCC------CC-----CCCh--hHHHHHHHHHHHHHHc--CCEEEEEcCCCCCcHHHHHh--
Q 015209 115 ANLNFDAYRFSISWSRIFPYG------TG-----KVNW--KGVAYYNQLINYLLKR--GITPYANLYHYDLPEALEKK-- 177 (411)
Q Consensus 115 ~~lG~~~~RfsIsW~ri~P~~------~g-----~~n~--~gl~~y~~~i~~l~~~--GI~p~vtL~H~d~P~~l~~~-- 177 (411)
..+|++..|..|.=+..-... .+ .++. +..++--.+|.++++. +|+.+.+- |..|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 458999999877322221111 01 1221 1122223466665543 47877777 9999998543
Q ss_pred c--CCCCC----hHHHHHHHHHHHHHHHHhCCC-cceE--Eecccccch
Q 015209 178 Y--NGLLS----KRVVKDFADYADFCFKTFGDR-VKNW--MTFNEPRVV 217 (411)
Q Consensus 178 y--gGw~~----~~~~~~F~~ya~~~~~~fgd~-V~~w--~t~NEP~~~ 217 (411)
+ +|.+. ++..+.|++|--..++.|... |..| .+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 345677777777777778763 5554 588999864
No 163
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.92 E-value=1.4e+02 Score=30.27 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYH 167 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H 167 (411)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|++..+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 689999999999999998866543 12488999999999999988753
No 164
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.77 E-value=1.4e+02 Score=29.37 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=55.4
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCC----cHHHHHhcCCCCChHH
Q 015209 111 VDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL----PEALEKKYNGLLSKRV 186 (411)
Q Consensus 111 i~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~----P~~l~~~ygGw~~~~~ 186 (411)
.+.+++.+-+.=-++..|-.|-|+| .+... ...++++.++++|+++++++..++- +.-+.. -..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 5677777777777888899998875 33321 2368999999999999999976541 111110 1235566
Q ss_pred HHHHHHHHHHHHHHhC
Q 015209 187 VKDFADYADFCFKTFG 202 (411)
Q Consensus 187 ~~~F~~ya~~~~~~fg 202 (411)
.+.|++=+-.++++||
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6777766666677765
No 165
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=27.70 E-value=2.4e+02 Score=30.45 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=56.5
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc----CCCCCcHHHHHh-----
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL----YHYDLPEALEKK----- 177 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL----~H~d~P~~l~~~----- 177 (411)
.++|++..++.|++.+|+....+.+ +-....++..++.|.....++ .+.+.|..+.+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 3457899999999999998765544 223555666666666553332 223333332211
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhC-CCcceEEecccccc
Q 015209 178 -----------YNGLLSKRVVKDFADYADFCFKTFG-DRVKNWMTFNEPRV 216 (411)
Q Consensus 178 -----------ygGw~~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~ 216 (411)
..|...|. ...+.++.+.++++ +.--...+-|-..+
T Consensus 166 ~~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 166 DMGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred HcCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 13555554 56667777778887 33335778887765
No 166
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=27.35 E-value=2.3e+02 Score=31.22 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=57.4
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcH----HHHHh-----
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPE----ALEKK----- 177 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~----~l~~~----- 177 (411)
.++|+++.++.|++.+|+..+-+.+ +-....++..+++|....+++..-+.|. .+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998765543 1235666777777877776664322341 11100
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccc
Q 015209 178 -----------YNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRV 216 (411)
Q Consensus 178 -----------ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 216 (411)
..|-..|. ...+.++.+.++++ .--...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 13455544 55666677777775 3335678787765
No 167
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=27.25 E-value=1e+02 Score=38.13 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=42.5
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc--C
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWS---------------RIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL--Y 166 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~---------------ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL--~ 166 (411)
+....+-+.-+++||++++=+|=-+. +|.|+- | +.+=+++++++++++||..|+.+ .
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34466778999999999997764333 333332 2 34558999999999999999975 4
Q ss_pred CC
Q 015209 167 HY 168 (411)
Q Consensus 167 H~ 168 (411)
|.
T Consensus 831 H~ 832 (1693)
T PRK14507 831 HM 832 (1693)
T ss_pred cc
Confidence 54
No 168
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=26.90 E-value=1.6e+02 Score=29.20 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccchhccccc
Q 015209 144 VAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYD 223 (411)
Q Consensus 144 l~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~ 223 (411)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 34568899999999999887764 45552 234667777776655434678888888888866555555
Q ss_pred CCccCC
Q 015209 224 NGFFAP 229 (411)
Q Consensus 224 ~G~~~P 229 (411)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565543
No 169
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.71 E-value=2.1e+02 Score=29.84 Aligned_cols=92 Identities=12% Similarity=0.229 Sum_probs=52.5
Q ss_pred cHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEcCCCCCcHHHHHhcCCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSI-SW-SRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY-ANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI-sW-~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~ygGw~~ 183 (411)
-+|.+++|+++|++.+-+++ += .++...- |.-. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~----------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG----------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 36889999999999666665 23 1222221 2211 23457789999999999864 5553 45552
Q ss_pred hHHHHHHHHHHHHHHHHhC-CCcceEEeccccc
Q 015209 184 KRVVKDFADYADFCFKTFG-DRVKNWMTFNEPR 215 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~ 215 (411)
++.+.|.+=.+.+.+ ++ +.+..+...=||+
T Consensus 205 -qt~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 -QTHASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred -CCHHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 234455555555443 33 3444444333443
No 170
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.96 E-value=90 Score=27.84 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=40.8
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
....++-+++++.+|++.+++...+-...+... ..--....+.++.+.+.+.++|+.+.+=-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 456788899999999999999976411111110 01111345678888888999998876643
No 171
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.92 E-value=64 Score=33.93 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=45.4
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCC---CCC-CChhHHHHHHHHHHHHHHcCCE-EEEEcCCCCCcHHHHHhcCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGK-VNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGL 181 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~---~g~-~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~ygGw 181 (411)
-+|.+++|+++|++.+-+++ .-.-++- -+. .+ .+...+.++.+++.|++ +-+.|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg--------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK--------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC---------
Confidence 37889999999999665554 3332221 022 23 35578899999999996 444543 44452
Q ss_pred CChHHHHHHHHHHHHHHH
Q 015209 182 LSKRVVKDFADYADFCFK 199 (411)
Q Consensus 182 ~~~~~~~~F~~ya~~~~~ 199 (411)
++.+.|.+-++.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAE 229 (455)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 234555555555544
No 172
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.88 E-value=3e+02 Score=27.73 Aligned_cols=63 Identities=21% Similarity=0.474 Sum_probs=44.0
Q ss_pred cHHHHHHHHHcCCCEEEecc----cc-------cccccCC---------CCCCChhHHHHHHHHHHHHHHcCCEEEEEcC
Q 015209 107 YKEDVDIMANLNFDAYRFSI----SW-------SRIFPYG---------TGKVNWKGVAYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsI----sW-------~ri~P~~---------~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
.++-|+.|+..++|.+.+-+ +| +++-..+ .|.+-. +=++++++-++++||+++.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec-
Confidence 56778999999999887665 23 3332211 023444 346899999999999999876
Q ss_pred CCCCcHHHH
Q 015209 167 HYDLPEALE 175 (411)
Q Consensus 167 H~d~P~~l~ 175 (411)
|+|....
T Consensus 96 --D~PGH~~ 102 (329)
T cd06568 96 --DMPGHTN 102 (329)
T ss_pred --CCcHHHH
Confidence 7887644
No 173
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.63 E-value=6.2e+02 Score=24.13 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.1
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v 163 (411)
++|-++.++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||+...
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 68899999999999998864211111111 12233 3467888889999998753
No 174
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=2.4e+02 Score=29.22 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=57.0
Q ss_pred HcCCCEEEecccccccccCCCCCCChhHHHHHHHH--HHHHHHcCCEEEEEcCCCCCcHHHHHhc---CC---CCChHHH
Q 015209 116 NLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQL--INYLLKRGITPYANLYHYDLPEALEKKY---NG---LLSKRVV 187 (411)
Q Consensus 116 ~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~--i~~l~~~GI~p~vtL~H~d~P~~l~~~y---gG---w~~~~~~ 187 (411)
++|++..|+-|.=.+.--. |..|. +|+++ -...+..|+++|.+- |..|.|+.... || -+.++--
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 4888999988754443211 45552 44443 233667888888877 89999987542 33 3444444
Q ss_pred HHHHHHHHHHHHHhCC---CcceEEecccccch
Q 015209 188 KDFADYADFCFKTFGD---RVKNWMTFNEPRVV 217 (411)
Q Consensus 188 ~~F~~ya~~~~~~fgd---~V~~w~t~NEP~~~ 217 (411)
.+|++|-...+.++++ -+.+--+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444555554 35556688999854
No 175
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.10 E-value=2.1e+02 Score=28.42 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCE-EE-EE---------------cCCCCCcHHHHHhcCCCCCh-H-HHHHHHHHHHHHHHHhCCC-
Q 015209 145 AYYNQLINYLLKRGIT-PY-AN---------------LYHYDLPEALEKKYNGLLSK-R-VVKDFADYADFCFKTFGDR- 204 (411)
Q Consensus 145 ~~y~~~i~~l~~~GI~-p~-vt---------------L~H~d~P~~l~~~ygGw~~~-~-~~~~F~~ya~~~~~~fgd~- 204 (411)
+-|.++++.+++.||+ |+ +. +..-++|.|+.+++....+. + ..+.=.+||....++.-+.
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5577899999999864 22 22 56789999999887776443 2 1122233444444443332
Q ss_pred cc--eEEecccccchh
Q 015209 205 VK--NWMTFNEPRVVA 218 (411)
Q Consensus 205 V~--~w~t~NEP~~~~ 218 (411)
|+ |..|+|-+....
T Consensus 269 v~GvH~yt~n~~~~~~ 284 (296)
T PRK09432 269 VKDFHFYTLNRAELTY 284 (296)
T ss_pred CCEEEEecCCChHHHH
Confidence 33 455788877543
No 176
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=24.10 E-value=2.3e+02 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q 015209 147 YNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKT 200 (411)
Q Consensus 147 y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~ 200 (411)
+..+++.++++|+..=+...|-.++.-+..+||. +....++.-.+|++.|-+.
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKL 264 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHHC
Confidence 4459999999999999999999999999999875 4455677777777776443
No 177
>PRK10426 alpha-glucosidase; Provisional
Probab=23.82 E-value=6.4e+02 Score=27.96 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=63.3
Q ss_pred cHHHHHHHHHcCCC--EEEecccccccccCCCC-------CCChhHHHHHHHHHHHHHHcCCEEEEEcCCC---CCcHHH
Q 015209 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTG-------KVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLPEAL 174 (411)
Q Consensus 107 y~eDi~lm~~lG~~--~~RfsIsW~ri~P~~~g-------~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---d~P~~l 174 (411)
..+-++.+++.|+. ++=+. .|.......-| .+|.+-.-=-+++|++|++.|++.++.+.-+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 44556778888865 44344 67644221111 2344333335889999999999988876532 334332
Q ss_pred HHh---c------C---------------CCCChHHHHHHHHHHHHHHHHhCCCcce-EEecccc
Q 015209 175 EKK---Y------N---------------GLLSKRVVKDFADYADFCFKTFGDRVKN-WMTFNEP 214 (411)
Q Consensus 175 ~~~---y------g---------------Gw~~~~~~~~F~~ya~~~~~~fgd~V~~-w~t~NEP 214 (411)
+.+ | | .++|++..+.|.+..+.-+...| |.. |.=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 16789999999887765555555 665 5788994
No 178
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.72 E-value=1.9e+02 Score=29.52 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHcCCE-EEEEcCCCCCcHHHHHhcCCCCC
Q 015209 108 KEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLLS 183 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIsW~ri~P~~---~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~ygGw~~ 183 (411)
++.++.|+++|++.+-+++ .-+-++- -|... ..+-..+.++.+++.|+. .-++|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999555554 3232221 02221 123456788899999997 456664 45552
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEecccccch
Q 015209 184 KRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 184 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 217 (411)
++.+.|.+=++.+.+-=-+.|..+...-||+..
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245677777777665333678888888888753
No 179
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=23.69 E-value=1.8e+02 Score=31.91 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCEEEec-c-ccccccc--------CCCCCC-----------Ch----hHHHHHHHHHHHHHHcCCEEEEE
Q 015209 110 DVDIMANLNFDAYRFS-I-SWSRIFP--------YGTGKV-----------NW----KGVAYYNQLINYLLKRGITPYAN 164 (411)
Q Consensus 110 Di~lm~~lG~~~~Rfs-I-sW~ri~P--------~~~g~~-----------n~----~gl~~y~~~i~~l~~~GI~p~vt 164 (411)
-++-+|+||++++=+. | +..-+.. .|.... |+ ...+=+++||++|.++||++|+.
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999865 2 2211100 010000 11 11356899999999999999997
Q ss_pred c--CCCC----------CcHHHHH--h------cCCC------CChHHHHHHHHHHHHHHHHhC
Q 015209 165 L--YHYD----------LPEALEK--K------YNGL------LSKRVVKDFADYADFCFKTFG 202 (411)
Q Consensus 165 L--~H~d----------~P~~l~~--~------ygGw------~~~~~~~~F~~ya~~~~~~fg 202 (411)
. .|.. .|.|... . +.|| .++.+.+.+.+-++..+++||
T Consensus 249 vV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~ 312 (605)
T TIGR02104 249 VVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN 312 (605)
T ss_pred EEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 3 4541 1222210 0 1122 245666777777777777776
No 180
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.60 E-value=1.2e+02 Score=27.15 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCCccccccHHHHHH-HHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 015209 99 VSVDQYHRYKEDVDI-MANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPY 162 (411)
Q Consensus 99 ~a~d~y~~y~eDi~l-m~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~ 162 (411)
.+|......++|++. ++++|++.+++.+.|+-- -...-+. ++--+.|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~--Wt~d~it-------~~gr~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPP--WTTDWIT-------EDAREKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCC--CChHHCC-------HHHHHHHHhcCccCC
Confidence 366667778888754 677899999988877521 1113344 344577899999873
No 181
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.46 E-value=1.1e+02 Score=29.20 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=39.4
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 015209 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYAN 164 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vt 164 (411)
...+++.-+++.+.+|.+.+++.-......+.. ...-...++.++.+.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 345666778999999999999864322111111 1111234567888899999999976654
No 182
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.31 E-value=2.1e+02 Score=27.90 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=33.0
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHH
Q 015209 103 QYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYL 154 (411)
Q Consensus 103 ~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l 154 (411)
-....++||+.++++|++-+=|++- +++|.+|.+. ..++++..
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHH---HHHHHHHh
Confidence 4566889999999999999999964 2247899855 46666665
No 183
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.27 E-value=1.4e+02 Score=31.46 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=45.8
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCC---CCCCChhHHHHHHHHHHHHHHcCCE-EEEEcCCCCCcHHHHHhcCCCC
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYG---TGKVNWKGVAYYNQLINYLLKRGIT-PYANLYHYDLPEALEKKYNGLL 182 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~---~g~~n~~gl~~y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~ygGw~ 182 (411)
-+|.+++|+++|++.+-+++ .-.-|+- -|.. ...+-..+.++.+++.|++ .-++|. +++|.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlPg---------- 215 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLPH---------- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCCC----------
Confidence 47899999999999555554 3332221 0211 1234567899999999997 445553 44552
Q ss_pred ChHHHHHHHHHHHHHHH
Q 015209 183 SKRVVKDFADYADFCFK 199 (411)
Q Consensus 183 ~~~~~~~F~~ya~~~~~ 199 (411)
++.+.|.+-.+.+.+
T Consensus 216 --qt~e~~~~tl~~~~~ 230 (453)
T PRK13347 216 --QTVESFRETLDKVIA 230 (453)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 234555555555554
No 184
>PRK06256 biotin synthase; Validated
Probab=23.20 E-value=1.4e+02 Score=29.80 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 106 RYKEDVDIMANLNFDAYRFSI-SWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsI-sW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
.-+|.++.|+++|++.+-+++ +=.++.+.-...-+ .+-.-+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 457899999999999998876 32233333211112 3556788999999999865443
No 185
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=23.15 E-value=2.2e+02 Score=31.94 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEecc--ccccc---cc------CCCC-----CCChh-----HHHHHHHHHHHHHHcCCEEEEEc
Q 015209 111 VDIMANLNFDAYRFSI--SWSRI---FP------YGTG-----KVNWK-----GVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 111 i~lm~~lG~~~~RfsI--sW~ri---~P------~~~g-----~~n~~-----gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
|+-+|+||++++=+.= +...- .. .|.. .++.. .++=+++||++|.++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 7899999999998662 22100 00 0100 11210 24558999999999999999974
No 186
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=23.04 E-value=76 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEcC
Q 015209 145 AYYNQLINYLLKRGITPYANLY 166 (411)
Q Consensus 145 ~~y~~~i~~l~~~GI~p~vtL~ 166 (411)
+.++.+|+.-++.|.++|+||.
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~p 45 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLP 45 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHhhhcCcceeEeec
Confidence 6789999999999999999985
No 187
>PRK09936 hypothetical protein; Provisional
Probab=22.90 E-value=5.9e+02 Score=25.57 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=43.7
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHH
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALE 175 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~ 175 (411)
|++=++.++.+|+++.= +.|++.--+.-|.- -.+..+.++...+.||+.+|.|+ +| |.|.+
T Consensus 40 Wq~~~~~~~~~G~~tLi--vQWt~yG~~~fg~~----~g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 40 WQGLWSQLRLQGFDTLV--VQWTRYGDADFGGQ----RGWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHcCCcEEE--EEeeeccCCCcccc----hHHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 56778899999999863 57888711100222 14689999999999999999996 45 45544
No 188
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.84 E-value=7.3e+02 Score=24.31 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCEEEEEcCCCC-C-c---HH--HHHhcC-----------CCCChHHHHHHHHHHHHHHHH
Q 015209 139 VNWKGVAYYNQLINYLLKRGITPYANLYHYD-L-P---EA--LEKKYN-----------GLLSKRVVKDFADYADFCFKT 200 (411)
Q Consensus 139 ~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d-~-P---~~--l~~~yg-----------Gw~~~~~~~~F~~ya~~~~~~ 200 (411)
+|.+-.--..++|++|+++|++.++.++-.. . + .. +.++.+ .+.||+..+.|- +.+.+.
T Consensus 68 ~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~---~~~~~~ 144 (292)
T cd06595 68 WNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYF---DNVHRP 144 (292)
T ss_pred EChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHH---HHHHHH
Confidence 3333333358899999999999888775321 1 1 11 222211 256666665543 333333
Q ss_pred h-CCCcc-eEEecccccch
Q 015209 201 F-GDRVK-NWMTFNEPRVV 217 (411)
Q Consensus 201 f-gd~V~-~w~t~NEP~~~ 217 (411)
+ ..-|+ .|.=+|||...
T Consensus 145 ~~~~Gidg~W~D~~E~~~~ 163 (292)
T cd06595 145 LEKQGVDFWWLDWQQGNRT 163 (292)
T ss_pred HHhcCCcEEEecCCCCccc
Confidence 2 22345 68889999754
No 189
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.39 E-value=3.7e+02 Score=26.18 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEec
Q 015209 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTF 211 (411)
Q Consensus 136 ~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 211 (411)
+|.+|.++ ++++++.+.+.|+.-++.+-+ .|=...-+.+...+..+.+.+.-++++..+.-.
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gs-----------tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGT-----------TGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECcc-----------CcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 48999966 699999999999999988743 121111224566777777777777777655443
No 190
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=22.37 E-value=3.3e+02 Score=30.00 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=51.6
Q ss_pred ccccHH-----HHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCc----HHH
Q 015209 104 YHRYKE-----DVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLP----EAL 174 (411)
Q Consensus 104 y~~y~e-----Di~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P----~~l 174 (411)
|..|.+ .++++++.|++.+|+.-+... ++-...-|+..++.|.....+++-=..| ..+
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd-------------~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~ 156 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALND-------------ARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNF 156 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcc-------------hHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHH
Confidence 555554 678999999999998643221 1223344555555555554442211111 111
Q ss_pred HH----------------hcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccch
Q 015209 175 EK----------------KYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 175 ~~----------------~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 217 (411)
.+ .-.|...|. ...+.++.+-++++ .--...+-|-..+-
T Consensus 157 ~~~ak~l~~~Gad~I~IkDtaG~l~P~---~v~~lv~alk~~~~-ipi~~H~Hnt~Gla 211 (596)
T PRK14042 157 LELGKKLAEMGCDSIAIKDMAGLLTPT---VTVELYAGLKQATG-LPVHLHSHSTSGLA 211 (596)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCHH---HHHHHHHHHHhhcC-CEEEEEeCCCCCcH
Confidence 10 014666655 45556666666774 32356677776653
No 191
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.14 E-value=7.4e+02 Score=24.15 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChH
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKR 185 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~ 185 (411)
+..+-++..|+.|+. ++.+|+.+---|.. |..+. +++.++++.+.+.|..-+ .|. |- .|...|.
T Consensus 115 ~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~-~~~~~---~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~P~ 178 (274)
T cd07938 115 RFEPVAELAKAAGLR-VRGYVSTAFGCPYE-GEVPP---ERVAEVAERLLDLGCDEI-SLG---------DT-IGVATPA 178 (274)
T ss_pred HHHHHHHHHHHCCCe-EEEEEEeEecCCCC-CCCCH---HHHHHHHHHHHHcCCCEE-EEC---------CC-CCccCHH
Confidence 345558899999985 77777766545665 66664 789999999999998643 442 22 5666654
Q ss_pred HHHHHHHHHHHHHHHhCCCcceEEeccccc
Q 015209 186 VVKDFADYADFCFKTFGDRVKNWMTFNEPR 215 (411)
Q Consensus 186 ~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 215 (411)
...++.+.+.+++++.--.+.+-|-..
T Consensus 179 ---~v~~lv~~l~~~~~~~~i~~H~Hnd~G 205 (274)
T cd07938 179 ---QVRRLLEAVLERFPDEKLALHFHDTRG 205 (274)
T ss_pred ---HHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 566667777777765322344544443
No 192
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=22.10 E-value=2.2e+02 Score=27.14 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=51.4
Q ss_pred cHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHH
Q 015209 107 YKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRV 186 (411)
Q Consensus 107 y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~ 186 (411)
|++-++.++..|++..==++.|..- + ...++.+.+++++.|. .|..+=+.-.||- ..+
T Consensus 92 w~~~~~~~~~~~~~l~sPa~~~~~~-----~--~~~g~~Wl~~F~~~~~-~~~~~D~iavH~Y-------------~~~- 149 (239)
T PF11790_consen 92 WKQYMNPLRSPGVKLGSPAVAFTNG-----G--TPGGLDWLSQFLSACA-RGCRVDFIAVHWY-------------GGD- 149 (239)
T ss_pred HHHHHhHhhcCCcEEECCeecccCC-----C--CCCccHHHHHHHHhcc-cCCCccEEEEecC-------------CcC-
Confidence 4444555555566555444444321 1 3345678999999988 5555544444553 112
Q ss_pred HHHHHHHHHHHHHHhCCCcceEEe
Q 015209 187 VKDFADYADFCFKTFGDRVKNWMT 210 (411)
Q Consensus 187 ~~~F~~ya~~~~~~fgd~V~~w~t 210 (411)
++.|.++.+.+-++|| .+.|+|
T Consensus 150 ~~~~~~~i~~~~~~~~--kPIWIT 171 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYG--KPIWIT 171 (239)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEE
Confidence 6789999999999999 778887
No 193
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.10 E-value=3.6e+02 Score=26.06 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEE
Q 015209 136 TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWM 209 (411)
Q Consensus 136 ~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~ 209 (411)
+|.+|+++ +++.++.|.+.|+..++.+-+- |-...-+.+...+..+.+.++-++++....
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst-----------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~ 74 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT-----------GESPTLSDEEHEAVIEAVVEAVNGRVPVIA 74 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC-----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 48999966 6899999999999999877431 211222355677777777777777766443
No 194
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=22.06 E-value=38 Score=33.08 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCChHHHHHHHHHHHHHHHHhCCCcceEEecccccchhcccccCCcc
Q 015209 152 NYLLKRGITPYANLYHYDLPEALEKKYNGLLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFF 227 (411)
Q Consensus 152 ~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~~ 227 (411)
--+.+..+.|+++|||||.=. .-+.+....+.++.+.+=|+.--.++-.+-..|---....+-+..||..-.+
T Consensus 75 G~~~a~~~~pl~SlHH~~~~~---PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 75 GFLEAHPLAPLVSLHHWDSVD---PIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred eeeecCCCCceeeeeehhhcc---ccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 335555689999999998632 2245665566677776644443333332222222333334556789987666
No 195
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.05 E-value=6.9e+02 Score=24.63 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHhcCCCCCh
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEKKYNGLLSK 184 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ygGw~~~ 184 (411)
.+.++-++..++.|+. ++.+|+=+---|.. |..+. +++.++++++.+.|..- ++|. |- .|..+|
T Consensus 120 ~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~~-~~~~~---~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~P 183 (287)
T PRK05692 120 ERFEPVAEAAKQAGVR-VRGYVSCVLGCPYE-GEVPP---EAVADVAERLFALGCYE-ISLG---------DT-IGVGTP 183 (287)
T ss_pred HHHHHHHHHHHHcCCE-EEEEEEEEecCCCC-CCCCH---HHHHHHHHHHHHcCCcE-EEec---------cc-cCccCH
Confidence 3456668888999974 67666544333554 66665 88999999999999874 4552 22 576665
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 015209 185 RVVKDFADYADFCFKTFGD 203 (411)
Q Consensus 185 ~~~~~F~~ya~~~~~~fgd 203 (411)
. ...+.++.+.+++++
T Consensus 184 ~---~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 184 G---QVRAVLEAVLAEFPA 199 (287)
T ss_pred H---HHHHHHHHHHHhCCC
Confidence 5 566677777778865
No 196
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.37 E-value=1.8e+02 Score=28.02 Aligned_cols=60 Identities=3% Similarity=0.065 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEc
Q 015209 104 YHRYKEDVDIMANLNFDAYRFSISWSRIFPYGT-GKVNWKGVAYYNQLINYLLKRGITPYANL 165 (411)
Q Consensus 104 y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~-g~~n~~gl~~y~~~i~~l~~~GI~p~vtL 165 (411)
-.+++.-+++++++|.+.+++.-. +..+.+. ...-...++.++++.+.+++.||...+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677789999999999998521 1111110 01112345677888999999999887754
No 197
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=21.33 E-value=68 Score=30.70 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.3
Q ss_pred CCCcceEEecccccch
Q 015209 202 GDRVKNWMTFNEPRVV 217 (411)
Q Consensus 202 gd~V~~w~t~NEP~~~ 217 (411)
+..+++++.||||+..
T Consensus 63 ~~~~~~ll~fNEPD~~ 78 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLP 78 (239)
T ss_pred ccCccceeeecCCCCC
Confidence 7889999999999963
No 198
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.23 E-value=3.2e+02 Score=28.03 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=58.3
Q ss_pred CccccccHHHHHHHHHcCCCEEEecccccccccCC----CCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHH
Q 015209 101 VDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYG----TGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEALEK 176 (411)
Q Consensus 101 ~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~----~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~ 176 (411)
++.+-.-++=++.+.++|++-+-+||+ .+-|.- -| ..+-++++-.++.+.+.+.||..+++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G-~~dYdv~kvle~aE~i~~a~idvlIa------Pv~l-- 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAG-RKDYDVKKVLEVAEYIANAGIDVLIA------PVWL-- 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcC-ccccCHHHHHHHHHHHHhCCCCEEEe------eeec--
Confidence 445556678899999999997777773 333432 13 23334677889999999999999876 6676
Q ss_pred hcCCCCChHHHHHHHHHHHHH
Q 015209 177 KYNGLLSKRVVKDFADYADFC 197 (411)
Q Consensus 177 ~ygGw~~~~~~~~F~~ya~~~ 197 (411)
.|. |.+-...+.+||+.+
T Consensus 266 --PG~-ND~E~~~iIe~A~~i 283 (414)
T COG2100 266 --PGV-NDDEMPKIIEWAREI 283 (414)
T ss_pred --CCc-ChHHHHHHHHHHHHh
Confidence 454 445577888888775
No 199
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.82 E-value=59 Score=20.12 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCEE
Q 015209 147 YNQLINYLLKRGITP 161 (411)
Q Consensus 147 y~~~i~~l~~~GI~p 161 (411)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788888888887
No 200
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.75 E-value=3.3e+02 Score=28.19 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred HHHHHHcCCCEEEecc-------cccccccCCCCCCCh-hHHHHHHHHHHHHHHcCCEEEE
Q 015209 111 VDIMANLNFDAYRFSI-------SWSRIFPYGTGKVNW-KGVAYYNQLINYLLKRGITPYA 163 (411)
Q Consensus 111 i~lm~~lG~~~~RfsI-------sW~ri~P~~~g~~n~-~gl~~y~~~i~~l~~~GI~p~v 163 (411)
++++|++|++.+=+-- -|.-=..+- ...+. -.-+...++.++++++||+.-+
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~-n~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNW-NAVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCCCCC-cccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 7999999999765321 122111000 00000 0236789999999999999887
No 201
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.69 E-value=4.6e+02 Score=25.07 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHc-CCEEEEE
Q 015209 105 HRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKR-GITPYAN 164 (411)
Q Consensus 105 ~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~-GI~p~vt 164 (411)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 5678999999999999998888665443332 1233 4467777777787 6665543
No 202
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.65 E-value=2.7e+02 Score=23.21 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-ccCCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 015209 108 KEDVDIMANLNFDAYRFSIS-WSRI-FPYGTGKVNWKGVAYYNQLINYLLKRGITP 161 (411)
Q Consensus 108 ~eDi~lm~~lG~~~~RfsIs-W~ri-~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p 161 (411)
++.++.+++.|++.+++|+. -..- ..+..+ .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999983 3321 111101 1123466778999999999984
No 203
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.42 E-value=3.2e+02 Score=28.32 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=63.5
Q ss_pred cHHHHHHHHHcCCC--EEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCC---CCc---HHHHHh-
Q 015209 107 YKEDVDIMANLNFD--AYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHY---DLP---EALEKK- 177 (411)
Q Consensus 107 y~eDi~lm~~lG~~--~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~---d~P---~~l~~~- 177 (411)
..+-++.+++.|+- ++=++..|..-.. +-.+|.+-..-.+++++.|+++|++.++.++-+ +.+ ..-+.+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45667777777765 4445555654221 134555444456899999999999987765421 222 211111
Q ss_pred --c-----CC----------------CCChHHHHHHHHHHHHHHHHhCCCcceEEecccccch
Q 015209 178 --Y-----NG----------------LLSKRVVKDFADYADFCFKTFGDRVKNWMTFNEPRVV 217 (411)
Q Consensus 178 --y-----gG----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 217 (411)
+ .| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 1 12 77888888888877776666532 3468899999875
No 204
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=20.36 E-value=9.2e+02 Score=24.58 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=74.7
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCC-------------cHHHHHhc--CC------CCC---hHHHHHHHH
Q 015209 137 GKVNWKGVAYYNQLINYLLKRGITPYANLYHYDL-------------PEALEKKY--NG------LLS---KRVVKDFAD 192 (411)
Q Consensus 137 g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~-------------P~~l~~~y--gG------w~~---~~~~~~F~~ 192 (411)
|-++++-+.-++++.+.++++|-..++=|+|-.- |..+.... .. .+. .+++++|++
T Consensus 75 ~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 75 RLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999532 00000000 00 011 146888888
Q ss_pred HHHHHHHHhCCCcceEEecccccchhcccccCCccC-CC---CCCcCCCCccCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 015209 193 YADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFA-PG---RCSKAFGNCTVGNSATEPYIVAHNLILSHAAAVQRYRQ 268 (411)
Q Consensus 193 ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~G~~~-Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~ 268 (411)
=|+.+.+.==|-|. +.+-.||+...|- |. +++. . |.| +-|-..--..+++.+|+
T Consensus 155 AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~RtD~-----y-GGs-------lenR~Rf~~eii~aIr~ 212 (370)
T cd02929 155 AALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRTDE-----Y-GGS-------LENRARFWRETLEDTKD 212 (370)
T ss_pred HHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCccc-----c-CCC-------hHhhhHHHHHHHHHHHH
Confidence 77766553224443 3455677765432 32 2221 1 222 12333333556777777
Q ss_pred HhccCCCceEEEEecCccccc
Q 015209 269 KYEQKQKGRIGILLDFVWYEP 289 (411)
Q Consensus 269 ~~~~~~~~kIGi~~~~~~~~P 289 (411)
... .+..||+-++.....|
T Consensus 213 ~vg--~~~~v~vRls~~~~~~ 231 (370)
T cd02929 213 AVG--DDCAVATRFSVDELIG 231 (370)
T ss_pred HcC--CCceEEEEecHHHhcC
Confidence 642 2457898888665554
No 205
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.30 E-value=7.6e+02 Score=23.56 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015209 106 RYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYA 163 (411)
Q Consensus 106 ~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~v 163 (411)
-+.|-+++++++|++.+=+++......+.. -.+.. .....+-+.+.++||++..
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCcee
Confidence 378999999999999999976543222222 11222 4467788899999998753
No 206
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.02 E-value=1.4e+02 Score=28.47 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCCccccccHHHHHHHHHcCCCEEEecccccccccCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH
Q 015209 99 VSVDQYHRYKEDVDIMANLNFDAYRFSISWSRIFPYGTGKVNWKGVAYYNQLINYLLKRGITPYANLYHYDLPEA 173 (411)
Q Consensus 99 ~a~d~y~~y~eDi~lm~~lG~~~~RfsIsW~ri~P~~~g~~n~~gl~~y~~~i~~l~~~GI~p~vtL~H~d~P~~ 173 (411)
+|.|..+. ++.+++++++|....-+-|-+.-+.-.| -++|+.|++.|...++.++-.|+|.-
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~G------------~~~i~~l~~~~~~i~~D~Kl~Di~~t 68 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAGG------------PQFVRELKQRGFKVFLDLKLHDIPNT 68 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhcC------------HHHHHHHHhcCCCEEEEeehhhcccc
Confidence 35665554 7889999999977655555554443221 46688899889999999998899853
Done!