BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015210
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 4/266 (1%)
Query: 90 GARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCA 149
G D E+ + R++L G + + D TLLRFLR R FD+ +KEMF N KW
Sbjct: 24 GNLDSAQEKALAELRKLLEDAGFI--ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRK 81
Query: 150 DYGVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFI 209
DYG DTIL YP YH DK GRPVY E +G V+L+ + +VT+ ER +
Sbjct: 82 DYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERML 141
Query: 210 RHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSN 269
++ V E E + +R P+CS AA + ++ +I+D+ G+ +S+ Y+ E I N
Sbjct: 142 KNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYV-REASYISQN 200
Query: 270 YYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSF 329
YYPE + + +IINA F +++ K FLD T++KI +LGS+Y L + I NLP
Sbjct: 201 YYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 260
Query: 330 LGGNCTCSD-YGGCLFSDKGPWNNPE 354
GG + GG SD GPW +P+
Sbjct: 261 FGGKSEVDESKGGLYLSDIGPWRDPK 286
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 148/266 (55%), Gaps = 11/266 (4%)
Query: 95 KDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVD 154
++E L+Q FR +LLE + +D TLLRFLR R FDI+ S EMF+ +W +YG +
Sbjct: 39 QEEALLQ-FRS-ILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 155 TIL------XXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERF 208
TI+ YP YH VDK GRP+Y E +G ++L + ++TT ++
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQM 155
Query: 209 IRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDS 268
+R+ V E E ++R P+CS A I ++ ++LD+ G+ +SN Y+ ++ I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYI-KDVADISQ 214
Query: 269 NYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPS 328
NYYPE + + +II++ F ++K+VK FLD T++KI +LGS+Y L + I NLP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 329 FLGGNCTCSDYGGCL-FSDKGPWNNP 353
GG + +SD GPW +P
Sbjct: 275 KYGGTSVLHNPNDKFYYSDIGPWRDP 300
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 147/266 (55%), Gaps = 11/266 (4%)
Query: 95 KDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVD 154
++E L+Q FR +LLE + +D TLLRFLR R FDI+ S EMF+ +W +YG +
Sbjct: 39 QEEALLQ-FRS-ILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 155 TIL------XXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERF 208
TI+ YP YH VDK GRP+Y +G ++L + ++TT ++
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQM 155
Query: 209 IRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDS 268
+R+ V E E ++R P+CS A I ++ ++LD+ G+ +SN Y+ ++ I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYI-KDVADISQ 214
Query: 269 NYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPS 328
NYYPE + + +II++ F ++K+VK FLD T++KI +LGS+Y L + I NLP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 329 FLGGNCTCSDYGGCL-FSDKGPWNNP 353
GG + +SD GPW +P
Sbjct: 275 KYGGTSVLHNPNDKFYYSDIGPWRDP 300
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 9/251 (3%)
Query: 90 GARDPKDEQLVQSFREMLLLEGQLP--PKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKW 147
G P+ ++ + FRE + + LP P +DY LLR+LR R FD+ KS+ M ++++
Sbjct: 6 GDLSPRQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEF 62
Query: 148 CADYGVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVER 207
+D I+ G G D G PV+ + IG +D LL + +
Sbjct: 63 RKQKDIDNIISWQPPEVIQQYLSG---GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD 119
Query: 208 FIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKID 267
+R + E E L + R + + T I D G+G+ + KPA + E L +
Sbjct: 120 LLRTKMRECELLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMF 178
Query: 268 SNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLP 327
YPETL RLF++ A F + + ++K FL T KI VLG+N+ L + I P +P
Sbjct: 179 EENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 238
Query: 328 SFLGGNCTCSD 338
GG T D
Sbjct: 239 VEYGGTMTDPD 249
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 9/251 (3%)
Query: 90 GARDPKDEQLVQSFREMLLLEGQLP--PKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKW 147
G P+ ++ + FRE + + LP P +DY LLR+LR R FD+ KS+ M ++++
Sbjct: 6 GDLSPRQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAMLRKHVEF 62
Query: 148 CADYGVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVER 207
+D I+ G G D G PV+ + IG +D LL + +
Sbjct: 63 RKQKDIDNIISWQPPEVIQQYLSG---GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD 119
Query: 208 FIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKID 267
+R + E E L + R + + T I D G+G+ + KPA + E L +
Sbjct: 120 LLRTKMRECELLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMF 178
Query: 268 SNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLP 327
YPETL RLF++ A F + + ++K FL T KI VLG+N+ L + I P +P
Sbjct: 179 EENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 238
Query: 328 SFLGGNCTCSD 338
GG T D
Sbjct: 239 VEYGGTMTDPD 249
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 115/251 (45%), Gaps = 9/251 (3%)
Query: 90 GARDPKDEQLVQSFREMLLLEGQLP--PKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKW 147
G P+ ++ + FRE + + LP P +DY LLR+LR R FD+ KS+ ++++
Sbjct: 6 GDLSPRQKEALAKFRENV--QDVLPALPNPDDYF-LLRWLRARSFDLQKSEAXLRKHVEF 62
Query: 148 CADYGVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVER 207
+D I+ G G D G PV+ + IG +D LL + +
Sbjct: 63 RKQKDIDNIISWQPPEVIQQYLSG---GXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD 119
Query: 208 FIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKID 267
+R E E L + R + + T I D G+G+ + KPA + E L
Sbjct: 120 LLRTKXRECELLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXF 178
Query: 268 SNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLP 327
YPETL RLF++ A F + + ++K FL T KI VLG+N+ L + I P +P
Sbjct: 179 EENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVP 238
Query: 328 SFLGGNCTCSD 338
GG T D
Sbjct: 239 VEYGGTXTDPD 249
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 28/217 (12%)
Query: 123 LLRFLRMRDFDISKSKEMFLNYLKW---CADYGVDTILXXXXXXXXXXXXXXYPHGYHGV 179
LLRFLR RDFD+ + + NY KW C + D GYHGV
Sbjct: 52 LLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL--------HPRSIIGLLKAGYHGV 103
Query: 180 ----DKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHI 235
D G V I RI D +V T R + E + + +R+
Sbjct: 104 LRSRDPTGSKVLIYRIAHWD----PKVFTAYDVFRVSLITSELIVQ------EVETQRN- 152
Query: 236 ASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVK 295
+I D+ G S+ + + +I + ++ +P + + +IN F ++ ++K
Sbjct: 153 -GIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIK 211
Query: 296 AFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGG 332
FL + +I + G+NY +L + P LP GG
Sbjct: 212 PFLTEKIKERIHMHGNNYKQSLLQHF-PDILPLEYGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 28/217 (12%)
Query: 123 LLRFLRMRDFDISKSKEMFLNYLKW---CADYGVDTILXXXXXXXXXXXXXXYPHGYHGV 179
LLRFLR RDFD+ + + NY KW C + D GYHGV
Sbjct: 36 LLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL--------HPRSIIGLLKAGYHGV 87
Query: 180 ----DKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHI 235
D G V I RI D +V T R + E + + +R+
Sbjct: 88 LRSRDPTGSKVLIYRIAHWD----PKVFTAYDVFRVSLITSELIVQ------EVETQRN- 136
Query: 236 ASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVK 295
+I D+ G S+ + + +I + ++ +P + + +IN F ++ +K
Sbjct: 137 -GIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIK 195
Query: 296 AFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGG 332
FL + +I G+NY +L + P LP GG
Sbjct: 196 PFLTEKIKERIHXHGNNYKQSLLQHF-PDILPLEYGG 231
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 323 PSNLPSFLGGNCTCSD-----YGGCLFSDKGP---WNNPEIKEVLQAV 362
P+N PSF GG+ D Y F+ + P W+NP+++E L A+
Sbjct: 151 PNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAM 198
>pdb|3D2O|A Chain A, Crystal Structure Of Manganese-Metallated Gtp
Cyclohydrolase Type Ib
pdb|3D2O|B Chain B, Crystal Structure Of Manganese-Metallated Gtp
Cyclohydrolase Type Ib
Length = 257
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 45 FPPEKEDKAPSSSKGGIKSLLNYPIKIRDSLKGIGRGKSMQVVL 88
FP ++ AP S GI+SLL+Y + + +K G SM+V++
Sbjct: 101 FPFFRKKTAPVS---GIRSLLDYDVSLTGEMKDGAYGHSMKVMI 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,424,404
Number of Sequences: 62578
Number of extensions: 512295
Number of successful extensions: 1157
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 10
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)