Query 015210
Match_columns 411
No_of_seqs 283 out of 1554
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 4.4E-46 9.4E-51 365.7 22.3 280 73-361 5-287 (317)
2 KOG1470 Phosphatidylinositol t 100.0 4.3E-38 9.4E-43 299.5 19.7 210 117-352 46-255 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.4E-31 2.9E-36 236.0 9.8 156 167-333 2-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 4.7E-29 1E-33 219.6 14.5 155 167-335 4-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 5.4E-26 1.2E-30 198.2 14.3 145 176-333 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 8.6E-15 1.9E-19 127.9 3.8 140 175-336 5-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.9 1.6E-09 3.5E-14 78.2 4.8 48 97-144 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.4 1.3E-06 2.8E-11 85.7 9.5 125 179-324 89-213 (467)
9 PF13897 GOLD_2: Golgi-dynamic 97.1 0.00034 7.5E-09 58.8 2.6 33 372-404 79-120 (136)
10 PF14555 UBA_4: UBA-like domai 80.5 4.8 0.0001 27.0 4.8 36 98-142 2-37 (43)
11 PF02845 CUE: CUE domain; Int 74.1 12 0.00026 24.8 5.3 38 98-143 3-40 (42)
12 smart00546 CUE Domain that may 67.9 16 0.00035 24.3 4.9 38 98-143 4-41 (43)
13 PF00627 UBA: UBA/TS-N domain; 59.1 30 0.00066 22.1 4.7 35 97-141 3-37 (37)
14 smart00165 UBA Ubiquitin assoc 47.2 49 0.0011 20.9 4.3 23 119-141 14-36 (37)
15 smart00804 TAP_C C-terminal do 44.0 93 0.002 22.9 5.8 45 91-144 7-51 (63)
16 cd00194 UBA Ubiquitin Associat 43.5 62 0.0013 20.5 4.4 24 119-142 14-37 (38)
17 KOG1838 Alpha/beta hydrolase [ 41.3 2.1E+02 0.0046 29.2 9.7 89 181-294 122-216 (409)
18 PF11964 SpoIIAA-like: SpoIIAA 37.6 2E+02 0.0044 22.6 7.8 64 236-309 31-95 (109)
19 PF06972 DUF1296: Protein of u 36.3 1.2E+02 0.0026 22.0 5.1 42 94-143 3-44 (60)
20 PF04838 Baculo_LEF5: Baculovi 35.1 23 0.0005 30.6 1.6 48 260-308 17-68 (159)
21 PF14213 DUF4325: Domain of un 32.2 1.5E+02 0.0032 22.1 5.5 49 239-292 19-69 (74)
22 COG2920 DsrC Dissimilatory sul 31.9 37 0.00081 27.5 2.1 44 101-146 27-73 (111)
23 PF04378 RsmJ: Ribosomal RNA s 29.7 38 0.00082 32.1 2.2 29 276-304 206-234 (245)
24 COG2961 ComJ Protein involved 29.4 44 0.00094 31.8 2.5 27 276-302 237-263 (279)
25 PF03474 DMA: DMRTA motif; In 27.7 68 0.0015 21.3 2.5 22 120-141 17-38 (39)
26 KOG2267 Eukaryotic-type DNA pr 27.4 1.8E+02 0.004 29.4 6.5 47 98-146 289-335 (475)
27 PRK12822 phospho-2-dehydro-3-d 27.2 6.5E+02 0.014 25.2 10.6 85 173-268 206-290 (356)
28 KOG1534 Putative transcription 26.8 1.4E+02 0.0031 27.8 5.2 87 232-324 93-192 (273)
29 cd07322 PriL_PriS_Eukaryotic E 25.4 2.8E+02 0.006 28.2 7.7 44 99-144 227-270 (390)
30 COG2137 OraA Uncharacterized p 25.4 1E+02 0.0022 27.5 4.1 36 109-144 129-164 (174)
31 PF02899 Phage_int_SAM_1: Phag 24.6 2.3E+02 0.0049 20.9 5.5 54 97-150 23-82 (84)
32 PRK09261 phospho-2-dehydro-3-d 24.6 6.1E+02 0.013 25.4 9.6 81 173-265 206-288 (349)
33 smart00110 C1Q Complement comp 24.0 52 0.0011 28.0 1.9 20 384-403 40-59 (135)
34 TIGR02364 dha_pts dihydroxyace 22.2 3.1E+02 0.0068 22.9 6.2 51 236-298 60-110 (125)
35 PF06855 DUF1250: Protein of u 21.1 1.5E+02 0.0033 20.1 3.4 29 103-131 1-29 (46)
36 PRK12756 phospho-2-dehydro-3-d 20.8 8.5E+02 0.018 24.3 10.3 86 172-268 204-289 (348)
37 PF08938 HBS1_N: HBS1 N-termin 20.8 21 0.00046 27.3 -1.0 41 98-144 30-70 (79)
38 TIGR00034 aroFGH phospho-2-deh 20.6 2.4E+02 0.0052 28.1 5.9 69 171-250 199-267 (344)
39 COG2260 Predicted Zn-ribbon RN 20.2 49 0.0011 23.9 0.8 16 27-42 22-37 (59)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-46 Score=365.66 Aligned_cols=280 Identities=42% Similarity=0.696 Sum_probs=254.1
Q ss_pred hhhhhcccCcccccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcC
Q 015210 73 DSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYG 152 (411)
Q Consensus 73 ~~~~~~~~~e~~~~~~l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~ 152 (411)
+...+.+..+ +.+.++.+++.++++| |+.++|+++..+.||.+|+||||||+||+++|.++|.+++.||++++
T Consensus 5 ~~~~~~~~~~------~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~ 77 (317)
T KOG1471|consen 5 PMLAKVAKEE------LNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNK 77 (317)
T ss_pred cccccccccc------cCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3445556667 8899999999999999 99999999887889999999999999999999999999999999999
Q ss_pred CCchhcccChhhHHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhc
Q 015210 153 VDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAK 232 (411)
Q Consensus 153 ~d~i~~~~~~~~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~ 232 (411)
+|+++.+. .....+.++++.+.+|.|++|+||++.+.|..|...++..+...++.++++..+|..+..+++.+....+
T Consensus 78 ~d~i~~~~--~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~ 155 (317)
T KOG1471|consen 78 LDEIFEDF--EEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGE 155 (317)
T ss_pred CccHhhcc--ccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999872 2334555577889999999999999999999999999999999999999999999999988888887777
Q ss_pred CccccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCC
Q 015210 233 RHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSN 312 (411)
Q Consensus 233 ~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~ 312 (411)
.+++|+++|+||+|++++|+....+..++.++.+++++||++++++||||+|++|+++|+++||||+++|++||++++++
T Consensus 156 ~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~ 235 (317)
T KOG1471|consen 156 RQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSK 235 (317)
T ss_pred CCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999966667
Q ss_pred chhHHHccCCCCCCCccCCCCccCC---CCCCccccCCCCCCChhhHHHhhh
Q 015210 313 YLSNLHELIDPSNLPSFLGGNCTCS---DYGGCLFSDKGPWNNPEIKEVLQA 361 (411)
Q Consensus 313 ~~~~L~e~Id~~~LP~eyGGt~~~~---~~~g~~~~~~~~w~~~~~~~~~~~ 361 (411)
+.++|.++|+++.||.+|||++++. ..++|..++.++|...........
T Consensus 236 ~~~~L~k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
T KOG1471|consen 236 DKESLLKYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE 287 (317)
T ss_pred chhhhhhhCCHhhCccccCCCccccccccCCcCccccccccccccccccccc
Confidence 7899999999999999999999997 366799999999999776654433
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=299.50 Aligned_cols=210 Identities=30% Similarity=0.478 Sum_probs=179.5
Q ss_pred CCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCCchhcccChhhHHHHhhcccceeeccCCCCCcEEEEeccccCc
Q 015210 117 HNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDL 196 (411)
Q Consensus 117 ~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~~d~i~~~~~~~~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~ 196 (411)
..+|.+++||||||||||++|.+||.++|.||+.+++..... ..+...-.....++..|.|++||||+|+|+....+
T Consensus 46 ~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~---~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~q 122 (324)
T KOG1470|consen 46 WCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIE---ADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQ 122 (324)
T ss_pred cCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccC---HHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCC
Confidence 458899999999999999999999999999999999776222 12222222334567889999999999998876655
Q ss_pred ccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccc
Q 015210 197 NALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLH 276 (411)
Q Consensus 197 ~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~ 276 (411)
+.. +..++.|+.+++||.++.. .....+++++++|++|++++|++ ....+.+++++|+||||||+
T Consensus 123 n~~----t~~~~~r~~Vy~mE~Ai~~--------lp~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg 187 (324)
T KOG1470|consen 123 NTK----TQKELERLLVYTLENAILF--------LPPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLG 187 (324)
T ss_pred CCC----CHHHHHHHHHHHHHHHHHh--------CCCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhh
Confidence 544 8999999999999999886 34567889999999999999998 89999999999999999999
Q ss_pred eEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCCCccCCCCccCCCCCCccccCCCCCCC
Q 015210 277 RLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNN 352 (411)
Q Consensus 277 ~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~LP~eyGGt~~~~~~~g~~~~~~~~w~~ 352 (411)
..+|+|+||+|..+|+++||||+++|++||.|..+ ...|.++||+++||..|||+.... +....+|..
T Consensus 188 ~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~GG~~~~~------y~~e~~~~~ 255 (324)
T KOG1470|consen 188 KALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLFGGKLLFE------YTHEEYWPQ 255 (324)
T ss_pred hhhhcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhhCCCcccc------cCCcchhhh
Confidence 99999999999999999999999999999999987 456999999999999999976654 334456665
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=1.4e-31 Score=236.02 Aligned_cols=156 Identities=36% Similarity=0.558 Sum_probs=130.8
Q ss_pred HHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhh-cCccccEEEEEecC
Q 015210 167 EVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAA-KRHIASTTSILDVT 245 (411)
Q Consensus 167 ~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~-~~~i~g~vvIiD~~ 245 (411)
.+.+.++.+++|+|++||||++++++++|+... +.+++++++++.+|.+++.+ . +.+++|+++|+|++
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~----~~~~~~~~~~~~~E~~~~~~-------~~~~~~~~~~~iiD~~ 70 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKF----SPEDVIRFFVYLLERMLKRM-------PEGGQVEGIVVIIDLS 70 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-----HHHHHHHHHHHHHHHHHTH-------HHTSHHH-EEEEEE-T
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcC----CHHHHHHHHHHHHHHHHhhh-------cccccceeEEEEEeCC
Confidence 345677889999999999999999999999865 78999999999999998653 2 36889999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCC-CchhHHHccCCCC
Q 015210 246 GVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGS-NYLSNLHELIDPS 324 (411)
Q Consensus 246 G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~-~~~~~L~e~Id~~ 324 (411)
|+++++++....+.++.++++++++||+|++++||||+|++++++|+++++||+++|++||+++++ ++.++|.++||++
T Consensus 71 g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~ 150 (159)
T PF00650_consen 71 GFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPE 150 (159)
T ss_dssp T--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGG
T ss_pred CceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHh
Confidence 999998875558999999999999999999999999999999999999999999999999999965 4457899999999
Q ss_pred CCCccCCCC
Q 015210 325 NLPSFLGGN 333 (411)
Q Consensus 325 ~LP~eyGGt 333 (411)
+||.+|||+
T Consensus 151 ~lP~~~GG~ 159 (159)
T PF00650_consen 151 QLPVEYGGT 159 (159)
T ss_dssp GSBGGGTSS
T ss_pred HCchhcCCC
Confidence 999999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=4.7e-29 Score=219.58 Aligned_cols=155 Identities=41% Similarity=0.611 Sum_probs=140.1
Q ss_pred HHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCC
Q 015210 167 EVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTG 246 (411)
Q Consensus 167 ~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G 246 (411)
..+.+++.+. |+|++||||+++++++++++.. +.+++++++++.+|.+++.. ....++.++++|+|++|
T Consensus 4 ~~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~ 72 (158)
T smart00516 4 LGKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSV----TLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKG 72 (158)
T ss_pred hHHHhcCCCC-CCCCCcCEEEEEeccccccCcC----CHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCC
Confidence 3455566665 8999999999999999987765 89999999999999988741 14567899999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCC
Q 015210 247 VGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNL 326 (411)
Q Consensus 247 ~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~L 326 (411)
+++++++ .+.++.++++++++||++++++||||+|++++++|+++++|+++++++||+++++++.+.|.++||+++|
T Consensus 73 ~~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 73 LSMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred CCccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 9999966 7899999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred CccCCCCcc
Q 015210 327 PSFLGGNCT 335 (411)
Q Consensus 327 P~eyGGt~~ 335 (411)
|.+|||++.
T Consensus 150 P~~~GG~~~ 158 (158)
T smart00516 150 PEELGGTLD 158 (158)
T ss_pred cHhhCCCCC
Confidence 999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.94 E-value=5.4e-26 Score=198.25 Aligned_cols=145 Identities=39% Similarity=0.587 Sum_probs=130.4
Q ss_pred eeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCChh
Q 015210 176 YHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKP 255 (411)
Q Consensus 176 ~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~ 255 (411)
..|+|++||||++++++..++... .+.+++++++++.+|.++... ..+..|+++|+|++|++++++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQED--------DEQVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhh--------hhcccceEEEEECCCCChhccc-h
Confidence 345799999999999997666544 245999999999999998762 3444799999999999999997 6
Q ss_pred HHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCCCccCCCC
Q 015210 256 ARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGN 333 (411)
Q Consensus 256 ~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~LP~eyGGt 333 (411)
....++.++++++++||++++++||||+|++++++|+++++|+++++++||++++++ .++|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 789999999999999999999999999999999999999999999999999999876 78999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.51 E-value=8.6e-15 Score=127.94 Aligned_cols=140 Identities=22% Similarity=0.316 Sum_probs=95.1
Q ss_pred eeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCCh
Q 015210 175 GYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSK 254 (411)
Q Consensus 175 ~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~ 254 (411)
+..|+|++||||+++....+ ++.. +.+.++.|++..++.. ....++++|+|++|++..+-+
T Consensus 5 ~~gG~d~~g~pV~~~~~~~~-~~~~----~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~- 65 (149)
T PF13716_consen 5 YPGGRDREGRPVVVFIASRL-PSSD----DLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP- 65 (149)
T ss_dssp EEEEEBTTS-EEEEEEGGG--C-TT----HHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG---
T ss_pred EecccCCCcCEEEEEECCcC-cchh----hHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC-
Confidence 45689999999999998877 4322 4555555555554211 123469999999999875443
Q ss_pred hHHHHHHHHHHHhhccCccccceEEEEecChhHHHHH-HHHHHhcCHhh-hcceEEcCCCchhHHHccCCCCCCCccCCC
Q 015210 255 PARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLW-KVVKAFLDART-LAKIQVLGSNYLSNLHELIDPSNLPSFLGG 332 (411)
Q Consensus 255 ~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w-~likpfL~~kt-~~KI~~~~~~~~~~L~e~Id~~~LP~eyGG 332 (411)
....++++.+.+...|+..++++||||++++++.++ .+.+++.+.+. ..||.++.+ .++|.++||+++||..+||
T Consensus 66 -~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~ 142 (149)
T PF13716_consen 66 -SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPG 142 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------H
T ss_pred -chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCC
Confidence 478899999999999999999999999999999999 56677789998 999999977 7899999999999999998
Q ss_pred CccC
Q 015210 333 NCTC 336 (411)
Q Consensus 333 t~~~ 336 (411)
+...
T Consensus 143 ~~~~ 146 (149)
T PF13716_consen 143 VLQY 146 (149)
T ss_dssp HH--
T ss_pred EEec
Confidence 8765
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.91 E-value=1.6e-09 Score=78.23 Aligned_cols=48 Identities=33% Similarity=0.413 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhc-------CCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLE-------GQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 97 ~~~l~elRe~l~~~-------~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
++++++|++.|... +.......+|.+|+||||||+|||++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 46799999999974 2233456789999999999999999999999876
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=1.3e-06 Score=85.72 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=99.9
Q ss_pred cCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCChhHHH
Q 015210 179 VDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARY 258 (411)
Q Consensus 179 ~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~~~~ 258 (411)
.|++||+|+++-+.++.+.+-+ .-..++++.++.++..++. -++.++=-.|+...+.+ .+.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~el---d~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSEL---DDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhhh---hhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 6999999999988887765421 3334899999999998864 16677777777766654 356
Q ss_pred HHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCC
Q 015210 259 LFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPS 324 (411)
Q Consensus 259 ~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~ 324 (411)
++.....-+..+|--.++.+|+|++-|+.+++|+++|||++.|..+||+.+.. .++|.++|.-+
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~--lseL~~~l~l~ 213 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS--LSELFEALKLN 213 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh--HHHHHHhhhhh
Confidence 66666666667788899999999999999999999999999999999999954 78888876543
No 9
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=97.08 E-value=0.00034 Score=58.81 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCCCCCCceec---------CCCCccccccceeEEEEeeCC
Q 015210 372 GGNGGEPSEMVR---------TEEPHLLCKDVYLYSLSTDSQ 404 (411)
Q Consensus 372 ~~~~~~~~~~~~---------~e~~~~~~~~~g~y~~~fd~~ 404 (411)
+.....+.+|+| +++|++.|..+|.|.|.|||+
T Consensus 79 ~~~~~~~~eviPv~R~dsH~~~~~Gs~~c~~~GvYvLkFDNS 120 (136)
T PF13897_consen 79 RSSRPEMDEVIPVYRRDSHLEVEAGSHTCPGPGVYVLKFDNS 120 (136)
T ss_pred ccCCCCeeEEeEeeeeecCcceeceEEECCCCeEEEEEeeCc
Confidence 445678889999 799999999999999999997
No 10
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=80.46 E-value=4.8 Score=27.02 Aligned_cols=36 Identities=11% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+.|.+|.+... .++.....||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG---------ADEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH----------SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC---------cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677776653 2568999999999999999998753
No 11
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=74.08 E-value=12 Score=24.84 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.+++|++.. | ..+...+..-|.++++|++.|+.+|..
T Consensus 3 ~~v~~L~~mF---P-----~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF---P-----DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS---S-----SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC---C-----CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4577777764 2 256789999999999999999998864
No 12
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=67.95 E-value=16 Score=24.26 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.+++|++.. |. .+...+.+.|++++.|++.|+..|..
T Consensus 4 ~~v~~L~~mF---P~-----l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF---PN-----LDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC---CC-----CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777763 32 56789999999999999999988753
No 13
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=59.07 E-value=30 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L 141 (411)
++.|++|+++ + .+.....+-|+.+++|+++|.+.|
T Consensus 3 ~~~v~~L~~m----G------f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM----G------FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH----T------S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc----C------CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 4566777766 1 245688899999999999998765
No 14
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=47.19 E-value=49 Score=20.89 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.5
Q ss_pred CHHHHHhhhhccCCCHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L 141 (411)
+.....+-|+.+++|+++|...|
T Consensus 14 ~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 14 SREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 45688999999999999998764
No 15
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.01 E-value=93 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 91 ARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 91 e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
.+.+.+++.|.+|-..- ..+..+-.++|...+||.++|.+.+.+-
T Consensus 7 ~~~~~q~~~v~~~~~~T---------gmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 7 TLSPEQQEMVQAFSAQT---------GMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred CCCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45677777777777653 2456899999999999999999987764
No 16
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=43.53 E-value=62 Score=20.52 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+.....+-|+.+++|+++|...|.
T Consensus 14 ~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 14 SREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHh
Confidence 468889999999999999987763
No 17
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=41.27 E-value=2.1e+02 Score=29.24 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCC------h
Q 015210 181 KFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFS------K 254 (411)
Q Consensus 181 k~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~------~ 254 (411)
....|++++-+|.-- .+.+.++|.++..... .+ =-++|++-.|++-+.+. .
T Consensus 122 ~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~------------~G----~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR------------KG----YRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh------------CC----cEEEEECCCCCCCCccCCCceeec
Confidence 355699988887732 2567888887654321 11 24688999996655543 2
Q ss_pred hHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHH
Q 015210 255 PARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVV 294 (411)
Q Consensus 255 ~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~li 294 (411)
.....++.+++.+...||.+ +++.|-.+....++++-+
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 23678999999999999998 888888888877777644
No 18
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=37.61 E-value=2e+02 Score=22.57 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred ccEEEEEecC-CCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEc
Q 015210 236 ASTTSILDVT-GVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVL 309 (411)
Q Consensus 236 ~g~vvIiD~~-G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~ 309 (411)
..+.+++|+. ++. .+.+.......++... +...++++-||-.+.+.+.+.+++.+| ...-+++.
T Consensus 31 ~~~~ll~d~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~----~~~~~~~F 95 (109)
T PF11964_consen 31 GKIRLLVDLRRDFE-----GWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF----PPIEVRYF 95 (109)
T ss_dssp SSEEEEEEEC-CEE-----EEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH-----SSEEEEE
T ss_pred CceEEEEEecCccC-----CCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc----CCCceEEE
Confidence 4578899988 652 1224555555555555 888899999999999999999999886 34445555
No 19
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=36.34 E-value=1.2e+02 Score=22.02 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 94 PKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 94 ~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.-+..|+.+++.... .+|.-++--|+-|+.|...|.+.|..
T Consensus 3 ~~~rk~VQ~iKEiv~~--------hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 3 AASRKTVQSIKEIVGC--------HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred hHHHHHHHHHHHHhcC--------CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3455677778876652 35688999999999999999999865
No 20
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=35.11 E-value=23 Score=30.60 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=40.3
Q ss_pred HHHHHHHhhccCccccc--eEEEEecChhHHHHHHHHHHhcCH--hhhcceEE
Q 015210 260 FMEILKIDSNYYPETLH--RLFIINAGSAFRMLWKVVKAFLDA--RTLAKIQV 308 (411)
Q Consensus 260 ik~~~~ilq~~YPerl~--~i~IVNaP~~f~~~w~likpfL~~--kt~~KI~~ 308 (411)
.+.++..+..+||..++ ..-++|.+-.|.++|+-+ |-++. +-|+.|++
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRL 68 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRL 68 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhh
Confidence 46788999999999999 899999999999999877 55666 66666666
No 21
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=32.21 E-value=1.5e+02 Score=22.13 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=32.9
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHHHhhccCc--cccceEEEEecChhHHHHHH
Q 015210 239 TSILDVTGVGMSNFSKPARYLFMEILKIDSNYYP--ETLHRLFIINAGSAFRMLWK 292 (411)
Q Consensus 239 vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YP--erl~~i~IVNaP~~f~~~w~ 292 (411)
.+++|+.|+.. ++ .+++-.++..+...|| +.-.++.++|+......+.+
T Consensus 19 ~V~lDF~gv~~--~~---ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 19 KVVLDFEGVES--IT---SSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred eEEEECCCccc--cc---HHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 38999999943 33 4566666666666666 45567888888777665444
No 22
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=31.87 E-value=37 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCCCCCCH-HHHHhhhhcc--CCCHHHHHHHHHHHHH
Q 015210 101 QSFREMLLLEGQLPPKHNDY-HTLLRFLRMR--DFDISKSKEMFLNYLK 146 (411)
Q Consensus 101 ~elRe~l~~~~~l~~~~~dd-~~LlRFLra~--kfdv~kA~~~L~~~l~ 146 (411)
+.+.++|+++..+ .-+++ .-++||||.. +|+..-|+.||.++..
T Consensus 27 E~vAe~lA~~e~i--~LT~eHWevv~fvR~fy~ef~tsPaiRMLvK~~~ 73 (111)
T COG2920 27 EKVAEALAEREGI--ELTEEHWEVVRFVREFYEEFNTSPAIRMLVKAMA 73 (111)
T ss_pred HHHHHHHHHHhcc--CccHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3455556655544 22334 4599999987 7899999999999876
No 23
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=29.73 E-value=38 Score=32.07 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=21.6
Q ss_pred ceEEEEecChhHHHHHHHHHHhcCHhhhc
Q 015210 276 HRLFIINAGSAFRMLWKVVKAFLDARTLA 304 (411)
Q Consensus 276 ~~i~IVNaP~~f~~~w~likpfL~~kt~~ 304 (411)
..|+|||+||.+....+-+-++|.+.+..
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 47999999999998888888877665543
No 24
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=29.41 E-value=44 Score=31.75 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=22.8
Q ss_pred ceEEEEecChhHHHHHHHHHHhcCHhh
Q 015210 276 HRLFIINAGSAFRMLWKVVKAFLDART 302 (411)
Q Consensus 276 ~~i~IVNaP~~f~~~w~likpfL~~kt 302 (411)
..|+|||+||.+..-...+-|+|...+
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 479999999999999988888876543
No 25
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=27.74 E-value=68 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.9
Q ss_pred HHHHHhhhhccCCCHHHHHHHH
Q 015210 120 YHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 120 d~~LlRFLra~kfdv~kA~~~L 141 (411)
...|-.-|++|+.||-+|++.+
T Consensus 17 r~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 17 RSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred hHHHHHHHHHcCCcHHHHHHHh
Confidence 4677788999999999999875
No 26
>KOG2267 consensus Eukaryotic-type DNA primase, large subunit [Replication, recombination and repair]
Probab=27.42 E-value=1.8e+02 Score=29.38 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLK 146 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~ 146 (411)
.+.++|-+.|.++-||. +.+..-+--||...+.+++.|.++|+.-++
T Consensus 289 pCmk~lhe~LrkNhHLr--y~gR~qygLFLKgiGLS~deal~fwr~sFt 335 (475)
T KOG2267|consen 289 PCMKQLHERLRKNHHLR--YGGRQQYGLFLKGIGLSVDEALAFWRGSFT 335 (475)
T ss_pred HHHHHHHHHHhhccccc--ccchhhhhhhhhccCcCHHHHHHHHHHHHh
Confidence 36788999999988875 456677888999999999999999655544
No 27
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.21 E-value=6.5e+02 Score=25.24 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=46.7
Q ss_pred cceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCC
Q 015210 173 PHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNF 252 (411)
Q Consensus 173 ~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~ 252 (411)
|+.+.|.|++|++.++-..|+-|..-+++-.....|-...+......+.. .... -.++||++.-+-..-
T Consensus 206 pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l~-~~vmVDcSH~NS~K~ 274 (356)
T PRK12822 206 PHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHD----------EGLN-HRLIIDCSHGNSQKV 274 (356)
T ss_pred CCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHH----------CCCC-CcEEEECCCccCCCC
Confidence 56677999999999998888877665543211111111112122222221 1122 348999998765433
Q ss_pred ChhHHHHHHHHHHHhh
Q 015210 253 SKPARYLFMEILKIDS 268 (411)
Q Consensus 253 ~~~~~~~ik~~~~ilq 268 (411)
....+.+++.++.-+.
T Consensus 275 ~~~Q~~V~~~v~~q~~ 290 (356)
T PRK12822 275 AKNQISVARELCDQLK 290 (356)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334566666665544
No 28
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=26.76 E-value=1.4e+02 Score=27.85 Aligned_cols=87 Identities=11% Similarity=0.263 Sum_probs=49.8
Q ss_pred cCccccEEEEEecCCC-C-CCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhH------HHHHHHHHHhcCH---
Q 015210 232 KRHIASTTSILDVTGV-G-MSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAF------RMLWKVVKAFLDA--- 300 (411)
Q Consensus 232 ~~~i~g~vvIiD~~G~-s-l~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f------~~~w~likpfL~~--- 300 (411)
.+..+.-.+|+|+-|- - +.|++ ++++++.-++. .--++..+|++..+++. +.++..+..++.=
T Consensus 93 ~Gd~eddylifDcPGQIELytH~p-----Vm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P 166 (273)
T KOG1534|consen 93 IGDVEDDYLIFDCPGQIELYTHLP-----VMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVP 166 (273)
T ss_pred ccCccCCEEEEeCCCeeEEeecCh-----hHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3567788899999983 2 23443 56667666666 45577888888777654 3344433333221
Q ss_pred --hhhcceEEcCCCchhHHHccCCCC
Q 015210 301 --RTLAKIQVLGSNYLSNLHELIDPS 324 (411)
Q Consensus 301 --kt~~KI~~~~~~~~~~L~e~Id~~ 324 (411)
....|.-+++....++|.++.+|+
T Consensus 167 ~INvlsKMDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 167 HINVLSKMDLLKDKNKKELERFLNPD 192 (273)
T ss_pred chhhhhHHHHhhhhhHHHHHHhcCCc
Confidence 123344444433345666666654
No 29
>cd07322 PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit, PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes, bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms, a heterotetrameric enzyme formed by DNA polymerase alpha, the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS, the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS, involvement in synthesis initiation, improvement of primase processivity, determination of product size and transfer of
Probab=25.42 E-value=2.8e+02 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 99 LVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 99 ~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
++..+-+.+.+..+|+ +....-|--||.+.+.+++.|.+.++..
T Consensus 227 Cm~~l~~~l~~~~hL~--h~gR~ql~lFLk~iGl~~~e~l~~~~~~ 270 (390)
T cd07322 227 CMRQLHEALRKNHHLK--HGGRLQLGLFLKGIGLSLEEALKFWRSE 270 (390)
T ss_pred HHHHHHHHHhcCCCCC--chhHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 4566666666666665 4566889999999999999999997665
No 30
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=25.41 E-value=1e+02 Score=27.55 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.3
Q ss_pred hcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 109 LEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 109 ~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
+.+.+++......-+.|||..++|+.+-+...|...
T Consensus 129 ~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 129 KRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred CccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344456666678999999999999999988887654
No 31
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=24.60 E-value=2.3e+02 Score=20.90 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCC------HHHHHHHHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFD------ISKSKEMFLNYLKWCAD 150 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfd------v~kA~~~L~~~l~wR~~ 150 (411)
...|..|..|+..+........+...+..|+....-. +......|+.++.|-..
T Consensus 23 ~~~l~~f~~~~~~~~~~~~~~i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 23 RRDLRRFIRWLEEHGIIDWEDITEEDVRDFLEYLAKEGLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp HHHHHHHHHHHHHTTS-CGGG--HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888555554556667777777655331 23345566666666543
No 32
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=24.58 E-value=6.1e+02 Score=25.39 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=42.8
Q ss_pred cceeeccCCCCCcEEEEeccccCcccccccC-CHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCC-
Q 015210 173 PHGYHGVDKFGRPVYIERIGMVDLNALLQVT-TVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMS- 250 (411)
Q Consensus 173 ~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~-~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~- 250 (411)
|+.+.|.|++|++-++...|+-|..-+++-. +...+-+..+......+.. .+ ...-+|+|++..+-.
T Consensus 206 ~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k--------~~---l~~~v~VD~SH~ns~k 274 (349)
T PRK09261 206 PHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEK--------AG---LPPRIMIDCSHANSGK 274 (349)
T ss_pred CceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH--------cC---CCCCEEEECCCcccCc
Confidence 5667789999999998888886665444322 2222222222222222221 11 135589999886533
Q ss_pred CCChhHHHHHHHHHH
Q 015210 251 NFSKPARYLFMEILK 265 (411)
Q Consensus 251 ~~~~~~~~~ik~~~~ 265 (411)
++. ..+.+++.++.
T Consensus 275 ~~~-~Q~~V~~~v~~ 288 (349)
T PRK09261 275 DHK-RQPEVARDVAA 288 (349)
T ss_pred chh-hhHHHHHHHHH
Confidence 332 22344444444
No 33
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=24.01 E-value=52 Score=28.01 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.8
Q ss_pred CCCCccccccceeEEEEeeC
Q 015210 384 TEEPHLLCKDVYLYSLSTDS 403 (411)
Q Consensus 384 ~e~~~~~~~~~g~y~~~fd~ 403 (411)
+..|.++|.-+|.|++.|.-
T Consensus 40 ~~TG~Ftcpv~GvY~F~f~~ 59 (135)
T smart00110 40 PRTGKFTCPVPGVYYFSYHV 59 (135)
T ss_pred CCCCEEECeeceEEEEEEEE
Confidence 57899999999999999873
No 34
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=22.16 E-value=3.1e+02 Score=22.93 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.9
Q ss_pred ccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhc
Q 015210 236 ASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFL 298 (411)
Q Consensus 236 ~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL 298 (411)
++++++.|+ |-+..+. ...+.++. ++..+.+..+|+|.+..++...+..-.
T Consensus 60 dgVlvl~DL-Ggs~~n~--------e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~~ 110 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNA--------EMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQV 110 (125)
T ss_pred CCEEEEEcC-CCcHhHH--------HHHHHHhc---cccccEEEEechhHHHHHHHHHHHHcC
Confidence 789999999 6553221 11223332 355578999999999999888876543
No 35
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=21.09 E-value=1.5e+02 Score=20.06 Aligned_cols=29 Identities=10% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHhhhhccC
Q 015210 103 FREMLLLEGQLPPKHNDYHTLLRFLRMRD 131 (411)
Q Consensus 103 lRe~l~~~~~l~~~~~dd~~LlRFLra~k 131 (411)
|.+++......|....+...++++|+...
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~ 29 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNY 29 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHC
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhc
Confidence 34677777888988889999999999843
No 36
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.80 E-value=8.5e+02 Score=24.34 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=47.8
Q ss_pred ccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCC
Q 015210 172 YPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSN 251 (411)
Q Consensus 172 ~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~ 251 (411)
.|+.+.|.+++|++.++-..|+-|..-+++-...-.|-...+......+.. .... -.++||++.-+-..
T Consensus 204 ~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l~-~~imVDcSH~NS~K 272 (348)
T PRK12756 204 ASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLRE----------FDLP-EHLVVDFSHGNCQK 272 (348)
T ss_pred CCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHHH----------CCCC-CcEEEECCCcccCC
Confidence 356678999999999998888877665543221111111222222222221 1122 34899999876543
Q ss_pred CChhHHHHHHHHHHHhh
Q 015210 252 FSKPARYLFMEILKIDS 268 (411)
Q Consensus 252 ~~~~~~~~ik~~~~ilq 268 (411)
-....+.+++.++.-+.
T Consensus 273 ~~~~Q~~V~~~v~~qi~ 289 (348)
T PRK12756 273 QHRRQLDVAEDICQQIR 289 (348)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33334566666665544
No 37
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=20.77 E-value=21 Score=27.35 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
.++.++|+.|...-. ++.-|..=|..+.|||++|+..|.+-
T Consensus 30 ~~l~~vr~~Lg~~~~------~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 30 SCLPQVREVLGDYVP------PEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp HHCCCHHHHCCCCC--------CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred HHHHHHHHHHcccCC------CHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 456677777653211 45678888889999999999988653
No 38
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.56 E-value=2.4e+02 Score=28.10 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=39.0
Q ss_pred cccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCC
Q 015210 171 FYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMS 250 (411)
Q Consensus 171 ~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~ 250 (411)
..|+++.|.+++|++.++...|+-|..-+++-.....+-+..+......+.. .... -.+|+|++..+-.
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~~----------~~lp-~~vmVD~SH~ns~ 267 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLEK----------AGLP-PHLMIDFSHGNSN 267 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHHH----------cCCC-CeEEEeCCCcccc
Confidence 3567888999999999998888866554433211122222333333332221 1111 3489999986543
No 39
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=49 Score=23.94 Aligned_cols=16 Identities=44% Similarity=0.428 Sum_probs=13.6
Q ss_pred cccceeeeccCCcccc
Q 015210 27 RSGEWTKVKHPPIETY 42 (411)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (411)
..|+.|++.|||+||=
T Consensus 22 ~CG~~t~~~~PprFSP 37 (59)
T COG2260 22 VCGGDTKVPHPPRFSP 37 (59)
T ss_pred CCCCccccCCCCCCCc
Confidence 5688999999999874
Done!