Query 015210
Match_columns 411
No_of_seqs 283 out of 1554
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aua_A Phosphatidylinositol tr 100.0 1.7E-56 5.9E-61 433.9 23.5 282 63-356 6-288 (296)
2 3q8g_A CRAL-TRIO domain-contai 100.0 8.2E-57 2.8E-61 440.1 18.7 266 88-356 31-303 (320)
3 1olm_A SEC14-like protein 2; l 100.0 2.4E-53 8.3E-58 428.8 23.7 245 88-338 4-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 2.1E-52 7.1E-57 408.6 18.6 273 43-337 7-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 6.3E-48 2.1E-52 366.9 18.5 232 91-337 3-236 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.3 4.9E-12 1.7E-16 119.0 8.3 132 173-326 12-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 2.3E-10 7.7E-15 109.3 6.1 131 174-326 32-163 (290)
8 1wgl_A TOLL-interacting protei 80.0 4.2 0.00014 28.5 5.6 40 97-144 10-49 (59)
9 2dhy_A CUE domain-containing p 72.6 7.4 0.00025 28.0 5.3 40 97-144 19-58 (67)
10 2dah_A Ubiquilin-3; UBA domain 72.2 8.2 0.00028 26.4 5.3 38 98-144 11-48 (54)
11 2dna_A Unnamed protein product 71.3 8.9 0.0003 27.6 5.5 39 97-144 20-58 (67)
12 1wr1_B Ubiquitin-like protein 70.1 8.8 0.0003 26.7 5.2 37 98-143 19-55 (58)
13 2dam_A ETEA protein; KIAA0887, 68.7 11 0.00036 27.1 5.5 45 90-142 12-56 (67)
14 2dal_A Protein KIAA0794; FAS a 68.7 12 0.0004 26.4 5.6 44 89-141 8-51 (62)
15 1vej_A Riken cDNA 4931431F19; 67.0 10 0.00035 27.9 5.1 38 97-143 30-67 (74)
16 2bwb_A Ubiquitin-like protein 65.8 9.2 0.00032 25.2 4.3 36 98-142 9-44 (46)
17 1ufz_A Hypothetical protein BA 65.6 9.2 0.00032 28.6 4.7 49 89-144 26-75 (83)
18 1z96_A DNA-damage, UBA-domain 65.0 8.9 0.0003 24.0 4.1 35 97-141 5-39 (40)
19 1q02_A Sequestosome 1; helical 62.8 12 0.00043 25.3 4.4 44 91-142 5-48 (52)
20 2cp8_A NEXT to BRCA1 gene 1 pr 57.5 30 0.001 23.6 5.8 37 99-144 12-48 (54)
21 2cwb_A Chimera of immunoglobul 55.4 13 0.00043 29.5 4.1 38 97-143 67-104 (108)
22 1v92_A NSFL1 cofactor P47; 3-h 54.7 16 0.00055 23.6 4.0 37 96-141 5-41 (46)
23 2knz_A Ubiquilin-4; cytoplasm, 54.0 21 0.00072 24.1 4.6 27 117-143 23-49 (53)
24 1oai_A Nuclear RNA export fact 54.0 43 0.0015 23.2 6.3 45 92-145 3-47 (59)
25 2jy5_A Ubiquilin-1; UBA, alter 51.1 22 0.00075 23.9 4.3 36 98-142 14-49 (52)
26 1otr_A Protein CUE2; protein-p 48.0 38 0.0013 22.6 5.0 39 98-144 6-44 (49)
27 1ify_A HHR23A, UV excision rep 43.6 44 0.0015 22.1 4.8 39 95-143 7-45 (49)
28 3e21_A HFAF1, FAS-associated f 43.0 30 0.001 22.7 3.8 36 96-140 5-41 (45)
29 2jp7_A MRNA export factor MEX6 42.4 50 0.0017 22.7 5.1 43 92-143 2-44 (57)
30 2di0_A Activating signal coint 40.1 50 0.0017 23.9 4.9 44 92-143 9-52 (71)
31 2q3l_A Uncharacterized protein 36.3 1.2E+02 0.0042 23.9 7.5 28 273-300 83-110 (126)
32 1wgn_A UBAP1, ubiquitin associ 33.4 98 0.0034 21.7 5.3 46 89-144 12-57 (63)
33 1wji_A Tudor domain containing 32.1 66 0.0022 22.5 4.5 26 119-144 22-47 (63)
34 1veg_A NEDD8 ultimate buster-1 31.3 99 0.0034 23.0 5.5 37 98-144 31-67 (83)
35 1vg5_A RSGI RUH-014, rhomboid 30.9 28 0.00096 25.3 2.4 26 118-143 41-66 (73)
36 2g3q_A Protein YBL047C; endocy 30.3 61 0.0021 20.5 3.7 24 119-142 17-40 (43)
37 2dzl_A Protein FAM100B; UBA-li 30.3 82 0.0028 22.2 4.7 35 98-141 19-53 (66)
38 3sbx_A Putative uncharacterize 27.4 1.3E+02 0.0043 26.1 6.4 64 256-323 121-189 (189)
39 2cp9_A EF-TS, EF-TSMT, elongat 26.4 98 0.0033 21.8 4.5 38 98-144 11-48 (64)
40 2kvs_A Uncharacterized protein 25.9 1.5E+02 0.0052 21.8 5.6 47 98-145 20-66 (80)
41 2dak_A Ubiquitin carboxyl-term 25.2 1.4E+02 0.0046 20.7 5.1 26 119-144 22-47 (63)
42 2oo3_A Protein involved in cat 24.1 37 0.0013 31.5 2.5 33 271-303 233-265 (283)
43 1p3q_Q VPS9P, vacuolar protein 24.1 46 0.0016 22.7 2.3 41 95-143 11-51 (54)
44 2wnv_C C1Q chain C, complement 23.3 38 0.0013 27.3 2.1 19 384-402 39-57 (131)
45 2wnv_B C1Q chain B, complement 23.2 38 0.0013 27.5 2.1 19 384-402 38-56 (136)
46 2wnv_A C1Q chain A, complement 23.0 39 0.0013 27.3 2.1 20 384-403 35-54 (134)
47 2dai_A Ubadc1, ubiquitin assoc 22.8 1.3E+02 0.0045 22.2 4.9 39 96-144 29-67 (83)
48 1wiv_A UBP14, ubiquitin-specif 21.6 1.8E+02 0.0062 20.8 5.3 25 119-143 42-66 (73)
49 3lgb_A DNA primase large subun 21.3 2.3E+02 0.0078 24.6 6.8 43 99-143 21-63 (194)
50 3k9o_A Ubiquitin-conjugating e 21.2 84 0.0029 27.3 4.1 24 119-142 176-199 (201)
51 2ka5_A Putative anti-sigma fac 20.7 2.8E+02 0.0094 21.4 6.9 51 238-294 53-103 (125)
52 3llo_A Prestin; STAS domain, c 20.2 3.2E+02 0.011 21.4 7.4 51 238-294 65-115 (143)
53 1bbg_A Pollen allergen 5; prot 20.1 16 0.00054 22.7 -0.6 21 385-405 13-33 (40)
No 1
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.7e-56 Score=433.86 Aligned_cols=282 Identities=39% Similarity=0.665 Sum_probs=253.9
Q ss_pred ccccCCCCCChhhhhcccCcccccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 63 SLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~e~~~~~~l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+++.|.....+... ... +++++++++++|++||+||+++++ +++.||.+|+|||||||||+++|.++|+
T Consensus 6 ~~~~~~~~~~~~~~---~~~------~~~l~~~q~~~l~~lr~~l~~~~~--~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 6 FLESYPQNCPPDAL---PGT------PGNLDSAQEKALAELRKLLEDAGF--IERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp HHTTSCCCCCTTSC---TTS------TTTCCTTHHHHHHHHHHHHHHTTC--CSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ccccCCCCCCcccC---CCC------CCCCCHHHHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 46667766665422 222 678899999999999999999884 4678999999999999999999999999
Q ss_pred HHHHHHHHcCCCchhcccChhhHHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhh
Q 015210 143 NYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSF 222 (411)
Q Consensus 143 ~~l~wR~~~~~d~i~~~~~~~~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~ 222 (411)
+|++||+.+++++++.+.++++.+.+.++++.+++|+|++||||+++++|.+|++++.+..+.+++++++++.+|.+++.
T Consensus 75 ~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~ 154 (296)
T 1aua_A 75 NCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQY 154 (296)
T ss_dssp HHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887665555677888888999999999999999999999999888889999999999999999987
Q ss_pred hcccchhhhcCccccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhh
Q 015210 223 RYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDART 302 (411)
Q Consensus 223 ~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt 302 (411)
++++|+...+.+++++++|+|++|++++|++.. +.+++.++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus 155 ~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t 233 (296)
T 1aua_A 155 RLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 233 (296)
T ss_dssp HHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhh
Confidence 777777777788999999999999999988753 7899999999999999999999999999999999999999999999
Q ss_pred hcceEEcCCCchhHHHccCCCCCCCccCCCCccCCC-CCCccccCCCCCCChhhH
Q 015210 303 LAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSD-YGGCLFSDKGPWNNPEIK 356 (411)
Q Consensus 303 ~~KI~~~~~~~~~~L~e~Id~~~LP~eyGGt~~~~~-~~g~~~~~~~~w~~~~~~ 356 (411)
++||+|+++++.++|.++||+++||++|||+++|.+ .+||+.++.|||+++++.
T Consensus 234 ~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~ 288 (296)
T 1aua_A 234 VSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288 (296)
T ss_dssp HTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGC
T ss_pred cceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhc
Confidence 999999998888899999999999999999999985 579999999999998765
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=8.2e-57 Score=440.13 Aligned_cols=266 Identities=35% Similarity=0.644 Sum_probs=244.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCCchhcccChh----
Q 015210 88 LQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFE---- 163 (411)
Q Consensus 88 ~l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~~d~i~~~~~~~---- 163 (411)
.+++++++++++|++||+||+++++ +.+.||.+|||||||||||+++|.+||++|++||+++++|+++.+++++
T Consensus 31 ~~~~lt~~q~~~l~~lR~~l~~~~~--~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~ 108 (320)
T 3q8g_A 31 TPGNLTKEQEEALLQFRSILLEKNY--KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAE 108 (320)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHTTC--CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccc
Confidence 3789999999999999999999984 3478999999999999999999999999999999999999998775544
Q ss_pred --hHHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEE
Q 015210 164 --EFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSI 241 (411)
Q Consensus 164 --~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvI 241 (411)
+...+.++++.+++|+|++||||+++++|++|++++.+.++.+++++++++.+|.+++.++++|+...+..++++++|
T Consensus 109 ~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~I 188 (320)
T 3q8g_A 109 DKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTV 188 (320)
T ss_dssp HHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred hhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEE
Confidence 344677888999999999999999999999999998777899999999999999999877777777777788999999
Q ss_pred EecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccC
Q 015210 242 LDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELI 321 (411)
Q Consensus 242 iD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~I 321 (411)
+|++|+++++++. .+.+++.++.++|++||+|++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++|
T Consensus 189 iD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i 267 (320)
T 3q8g_A 189 LDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQI 267 (320)
T ss_dssp EECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHS
T ss_pred EECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhC
Confidence 9999999999864 378899999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCCCCccCCCCccCCC-CCCccccCCCCCCChhhH
Q 015210 322 DPSNLPSFLGGNCTCSD-YGGCLFSDKGPWNNPEIK 356 (411)
Q Consensus 322 d~~~LP~eyGGt~~~~~-~~g~~~~~~~~w~~~~~~ 356 (411)
|+++||++|||+++|.+ .|||..+|.|||++|++.
T Consensus 268 ~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~ 303 (320)
T 3q8g_A 268 PIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYI 303 (320)
T ss_dssp CGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTC
T ss_pred ChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhc
Confidence 99999999999999976 699999999999998765
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.4e-53 Score=428.81 Aligned_cols=245 Identities=31% Similarity=0.471 Sum_probs=221.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcC-CCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCCchhcccChhhHH
Q 015210 88 LQGARDPKDEQLVQSFREMLLLEG-QLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFA 166 (411)
Q Consensus 88 ~l~e~~~~~~~~l~elRe~l~~~~-~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~~d~i~~~~~~~~~~ 166 (411)
.++++++.++++|++||+||.+++ +++ +.||.+|+||||||+||+++|.+||++|++||+++++++++.. ..+ +
T Consensus 4 ~~~~l~~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~--~ 78 (403)
T 1olm_A 4 RVGDLSPRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPP--E 78 (403)
T ss_dssp BTTBCCHHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCC--H
T ss_pred CccCCCHHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCH--H
Confidence 378999999999999999999884 455 5799999999999999999999999999999999999888763 222 3
Q ss_pred HHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCC
Q 015210 167 EVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTG 246 (411)
Q Consensus 167 ~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G 246 (411)
.+.++++.+++|+|++||||+++++|.+|++++++..+.+++++++++.+|.+++.+ +.++...+.++.|+++|+||+|
T Consensus 79 ~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~g 157 (403)
T 1olm_A 79 VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEG 157 (403)
T ss_dssp HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECCC
Confidence 567778888999999999999999999999988777899999999999999999863 3344445667899999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCC
Q 015210 247 VGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNL 326 (411)
Q Consensus 247 ~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~L 326 (411)
++++|++++.+.+++.+++++|++||+|++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus 158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 99999988889999999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred CccCCCCccCCC
Q 015210 327 PSFLGGNCTCSD 338 (411)
Q Consensus 327 P~eyGGt~~~~~ 338 (411)
|++|||++++++
T Consensus 238 P~~yGG~~~~~~ 249 (403)
T 1olm_A 238 PVEYGGTMTDPD 249 (403)
T ss_dssp BGGGTSSBCCTT
T ss_pred chhhCCCcCCCC
Confidence 999999998763
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.1e-52 Score=408.63 Aligned_cols=273 Identities=20% Similarity=0.303 Sum_probs=207.4
Q ss_pred ccCCCcccccCCC-CCCCCc----cccccCCCCCChhhhhcccCcccccccCCCCCHHHHHHHHHHHHHHHhcCCCC---
Q 015210 43 WLFPPEKEDKAPS-SSKGGI----KSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLP--- 114 (411)
Q Consensus 43 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~~~~~~~~e~~~~~~l~e~~~~~~~~l~elRe~l~~~~~l~--- 114 (411)
+..-+|+|+.-++ +.-=+. ..++.+. +|++.++++|++| |+|.++.++++|++||+||+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~e------L~E~~~~~~~~l~~LR~wi~~~p~l~~~l 79 (316)
T 3hx3_A 7 FRMVPEEEQELRAQLEQLTTKDHGPVFGPCS-QLPRHTLQKAKDE------LNEREETREEAVRELQEMVQAQAASGEEL 79 (316)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred eeeccHHHHHHHHHHHhhhhccCCccccCCC-CCCHHHHHHHHHH------hCCChHHHHHHHHHHHHHHHhCCCccccc
Confidence 3455666666554 111122 1466666 8999999999999 99999999999999999999999975
Q ss_pred -------CCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCCchhcccChhhHHH-HhhcccceeeccCCCCCcE
Q 015210 115 -------PKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAE-VKKFYPHGYHGVDKFGRPV 186 (411)
Q Consensus 115 -------~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~~d~i~~~~~~~~~~~-l~~~~~~~~~G~Dk~GrpV 186 (411)
.+++||.+|+|||||||||+++|.++|.+|++||+.++ +++.+.++++... +...++.+++|+|++||||
T Consensus 80 ~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpV 157 (316)
T 3hx3_A 80 AVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVV 157 (316)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEE
T ss_pred cccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhhcCCCHHHHHHHHHcCCccccCCCCCCCCEE
Confidence 36789999999999999999999999999999999998 6666655544333 4556667788999999999
Q ss_pred EEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCChhHHHHHHHHHHH
Q 015210 187 YIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKI 266 (411)
Q Consensus 187 ~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~i 266 (411)
+++++|++|++++ +.+++++++++.+|.++.. .+.++.|+++|+|++|++++|+....+..++.++.+
T Consensus 158 ii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~ 225 (316)
T 3hx3_A 158 MLFNIENWQSQEI----TFDEILQAYCFILEKLLEN--------EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDM 225 (316)
T ss_dssp EEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHH
T ss_pred EEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHH
Confidence 9999999999876 8999999999999998864 456789999999999999998765567899999999
Q ss_pred hhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCCCccCCCCccCC
Q 015210 267 DSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCS 337 (411)
Q Consensus 267 lq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~LP~eyGGt~~~~ 337 (411)
+|++||+|++++||||+|++|.++|+++||||+++|++||+|+++++ ++|.++||+++||++|||++++.
T Consensus 226 lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 226 LQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp HHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred HHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 99999999999999999999999999999999999999999998764 78999999999999999999866
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=6.3e-48 Score=366.92 Aligned_cols=232 Identities=23% Similarity=0.317 Sum_probs=200.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC-CCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCCchhcccChhhH-HHH
Q 015210 91 ARDPKDEQLVQSFREMLLLEGQ-LPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEF-AEV 168 (411)
Q Consensus 91 e~~~~~~~~l~elRe~l~~~~~-l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~~d~i~~~~~~~~~-~~l 168 (411)
++++.++++|++||+++.+++. ..+.+.||.+|+||||||+||+++|.++|.+|++||+.++ +++.++++++. ..+
T Consensus 3 ~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 3 HMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISADLHPRSIIGLL 80 (262)
T ss_dssp ------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHSCCCGGGTHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--HhhhcCChHHHHHHH
Confidence 4677888999999999998864 3456789999999999999999999999999999999997 56655554432 234
Q ss_pred hhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCC
Q 015210 169 KKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVG 248 (411)
Q Consensus 169 ~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~s 248 (411)
...+..+++|+|++||||+++++|.+|++++ +..++++++++.+|.++.. .+.++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 5555667889999999999999999999876 7899999999999988764 344678999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCCCc
Q 015210 249 MSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPS 328 (411)
Q Consensus 249 l~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~LP~ 328 (411)
++|++...++.++.+++++|++||+|++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99986666899999999999999999999999999999999999999999999999999999888889999999 99999
Q ss_pred cCCCCccCC
Q 015210 329 FLGGNCTCS 337 (411)
Q Consensus 329 eyGGt~~~~ 337 (411)
+|||+++..
T Consensus 228 ~yGG~~~~~ 236 (262)
T 1r5l_A 228 EYGGEEFSM 236 (262)
T ss_dssp GGTCSSCCH
T ss_pred hhCCCCCCH
Confidence 999998653
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.28 E-value=4.9e-12 Score=119.03 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=110.6
Q ss_pred cceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCC
Q 015210 173 PHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNF 252 (411)
Q Consensus 173 ~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~ 252 (411)
..+..|.|++||||+++.++++++..+ +.+.++.+.+..++.+.. ..+++|+|++|++..+.
T Consensus 12 ify~~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 12 IFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp SEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGC
T ss_pred CEEEcCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCCcccC
Confidence 345568999999999999999998765 788888887777765432 46899999999998766
Q ss_pred ChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHH-HHHhcCHhhhcceEEcCCCchhHHHccCCCCCC
Q 015210 253 SKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKV-VKAFLDARTLAKIQVLGSNYLSNLHELIDPSNL 326 (411)
Q Consensus 253 ~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~l-ikpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~L 326 (411)
+ ...+++.+.+++...|...++++||+|++++++..|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 74 p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 F--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp C--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred C--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 5 47889999999999999999999999999999977665 566777788899999976 7899999987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.02 E-value=2.3e-10 Score=109.31 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=100.3
Q ss_pred ceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEecCCCCCCCCC
Q 015210 174 HGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFS 253 (411)
Q Consensus 174 ~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~ 253 (411)
.+..|.|++||||+++.+++++...+ +.+.++-+.+.+++.... ..+++|+|+++++..+-+
T Consensus 32 f~~~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~p 93 (290)
T 3peg_A 32 FYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF 93 (290)
T ss_dssp EEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC
T ss_pred EEEeccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCCC
Confidence 44558999999999999999998766 788887777777665432 468999999999987654
Q ss_pred hhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHH-HHHHHhcCHhhhcceEEcCCCchhHHHccCCCCCC
Q 015210 254 KPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLW-KVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNL 326 (411)
Q Consensus 254 ~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w-~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~~L 326 (411)
...+++.+..++...|+..++++||+|++++|+..+ ...++|.+.+..+|+.++++ ...|..+++++++
T Consensus 94 --~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 --KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp --CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred --hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 378999999999999999999999999999998755 46678888899999999875 4558888877643
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=80.03 E-value=4.2 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
++.+++|+++. | ..|...+-.-|++++.|++.|+.+|.+.
T Consensus 10 ee~l~~L~emF------P--~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF------P--NMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC------S--SSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC------C--CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35677777763 2 2678999999999999999999998753
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.63 E-value=7.4 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
.+.+++|+++. | ..|...+..-|++++.|++.|++.|.+.
T Consensus 19 ~~~v~~L~~MF---P-----~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMF---P-----NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHC---S-----SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---C-----CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45677888874 2 3678999999999999999999998765
No 10
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.22 E-value=8.2 Score=26.41 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
..|++|+++ ...|+.-.++-|++.++|+++|++.|...
T Consensus 11 ~~l~~L~~M---------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM---------GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH---------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 457777776 24566677999999999999999988654
No 11
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.28 E-value=8.9 Score=27.58 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
...|++|+++ ...|...-++-|++.+.|+++|++.|.+.
T Consensus 20 ~~ql~qL~~M---------GF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 20 SKEMECLQAM---------GFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHHH---------TCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3467777776 24677778999999999999999987653
No 12
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=70.13 E-value=8.8 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.|++|+++ ...|....++-|++.++|+++|++.|..
T Consensus 19 ~qi~~L~~M---------GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM---------GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH---------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc---------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 457777776 2456778899999999999999998864
No 13
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.73 E-value=11 Score=27.07 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 90 GARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 90 ~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
.+++..+.+.|++|..... ..+......||..++||++.|+..+-
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4677888888888888643 13567889999999999999987753
No 14
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.72 E-value=12 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHH
Q 015210 89 QGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 89 l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L 141 (411)
...++....+.|++|...-. .+......||.+++||++.|+..+
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34567777788888887532 357889999999999999998765
No 15
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.99 E-value=10 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
++.|++|+++ .+.|..-.++-|++.++|+++|++.|..
T Consensus 30 e~qi~qL~eM---------GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL---------GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH---------TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc---------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457777776 2456778899999999999999998754
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=65.76 E-value=9.2 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
..|++|+++ ...|..-.++-|++.++|+++|++.|.
T Consensus 9 ~~i~~L~~M---------GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 9 HQLRQLNDM---------GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHT---------TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHc---------CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455666654 235667789999999999999998874
No 17
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=65.62 E-value=9.2 Score=28.63 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=36.1
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 89 QGARDPKDE-QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 89 l~e~~~~~~-~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
|.+.++.++ .+|+++|+.|.. -..+..|.+-...++||+++|...+.+-
T Consensus 26 Ls~~d~arL~SCLd~iR~VlGd-------sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 26 LSEIDQARLYSCLDHMREVLGD-------AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTT-------TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcc-------cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 334444443 579999998864 1346888888899999999999987653
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=64.98 E-value=8.9 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L 141 (411)
.+.|++|.++ + .+.....+.|+++++|++.|...|
T Consensus 5 ~~~i~~L~~m----G------f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM----G------FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT----T------CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc----C------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4456666654 1 245677889999999999998765
No 19
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=62.77 E-value=12 Score=25.25 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 91 ARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 91 e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+.++.-.++|.+|..+ + -.++-.+|-|.|.+.++|+.+|.+.|.
T Consensus 5 ~~D~rl~~al~qMl~M----G----F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 5 EADPRLIESLSQMLSM----G----FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TSCHHHHHHHHHHHTT----T----CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred CcChHHHHHHHHHHHc----C----CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4455555666666544 1 123447999999999999999998874
No 20
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.53 E-value=30 Score=23.65 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 99 LVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 99 ~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
.+++|+++ .+.|...=.+-|+..++|+++|+..|.+.
T Consensus 12 ~L~~L~eM---------GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEM---------GFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHH---------TCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 56677776 35688888999999999999999887653
No 21
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=55.43 E-value=13 Score=29.47 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 97 EQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 97 ~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
.+.|++|+++ ...|+...++-|++.++|+++|++.|.+
T Consensus 67 ~~qL~qL~eM---------GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDM---------GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTT---------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc---------CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456676664 2456778999999999999999998864
No 22
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=54.74 E-value=16 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHH
Q 015210 96 DEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 96 ~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L 141 (411)
+.+.+++|...-. .+......||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG---------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC---------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556777776422 357889999999999999998765
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=54.03 E-value=21 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 117 HNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 117 ~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
..|....++-|+++++|+++|++.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 447788899999999999999998764
No 24
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.97 E-value=43 Score=23.18 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHH
Q 015210 92 RDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYL 145 (411)
Q Consensus 92 ~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l 145 (411)
+++++++.|.+|.+.- ..+-.+-.++|...+||.++|...+....
T Consensus 3 ls~~q~~mv~~~s~~T---------gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LSPEQQEMLQAFSTQS---------GMNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4667778888887753 25668999999999999999999876653
No 25
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=51.10 E-value=22 Score=23.93 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
..|++|.++ ...+....++-|++.++|+++|++.|.
T Consensus 14 ~~l~~L~~M---------GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 14 QQLEQLSAM---------GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHT---------TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHc---------CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456666664 244678889999999999999998774
No 26
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=48.05 E-value=38 Score=22.61 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
..++.|.++. |. .+...+.+-|+++++|+++|+.+|.+.
T Consensus 6 ~~v~~L~EMF------P~--~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMF------PA--ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHC------SS--SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC--CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4455666653 22 456888999999999999999998764
No 27
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.57 E-value=44 Score=22.07 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 95 KDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 95 ~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
...+.|++|-++ + .+..-..+=|+++++|+++|.+.|..
T Consensus 7 ~~~~~i~~L~~M----G------F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSM----G------YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHT----T------CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHc----C------CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 344556666554 1 35678889999999999999988754
No 28
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=42.99 E-value=30 Score=22.68 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCH-HHHHhhhhccCCCHHHHHHH
Q 015210 96 DEQLVQSFREMLLLEGQLPPKHNDY-HTLLRFLRMRDFDISKSKEM 140 (411)
Q Consensus 96 ~~~~l~elRe~l~~~~~l~~~~~dd-~~LlRFLra~kfdv~kA~~~ 140 (411)
+.+.|++|.+.-. .++ .....||.+++||++.|...
T Consensus 5 ~de~ia~F~~iTG---------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG---------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 5567888887532 233 78889999999999999753
No 29
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=42.37 E-value=50 Score=22.75 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 92 RDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 92 ~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+++.+++.|.+|...- ..+..+-.++|...+||.++|...+..
T Consensus 2 l~~~q~~mv~~~s~~T---------~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 2 LNPVQLELLNKLHLET---------KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCHHHHHHHHHHHHHH---------CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4667777888877653 256789999999999999999999877
No 30
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=40.10 E-value=50 Score=23.90 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 92 RDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 92 ~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
....-...|.++++.+ | ...+.|+.+.|..++.|++.++..|.+
T Consensus 9 ~~~~l~s~I~qV~DLf------P--dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------P--DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------C--SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------c--cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445556788888864 2 257799999999999999999998754
No 31
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=36.30 E-value=1.2e+02 Score=23.91 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.6
Q ss_pred cccceEEEEecChhHHHHHHHHHHhcCH
Q 015210 273 ETLHRLFIINAGSAFRMLWKVVKAFLDA 300 (411)
Q Consensus 273 erl~~i~IVNaP~~f~~~w~likpfL~~ 300 (411)
..+.++-||-.+.|.+.+.++..+|++.
T Consensus 83 ~~~~RiAvV~d~~W~~~~~~~~~~~~~~ 110 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQEWATRVANWFTPG 110 (126)
T ss_dssp GGEEEEEEECCSHHHHHHHHHHHHHCSS
T ss_pred hcCCEEEEEcChHHHHHHHHHHhhccCC
Confidence 6789999999999999999999999765
No 32
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.44 E-value=98 Score=21.70 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 89 QGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 89 l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
|.-+.+.|.++|+.+-.+ -.++....+=|++++.|+++|.+-|-.+
T Consensus 12 l~~ls~se~e~V~~LvsM----------GFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNM----------GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHTCCHHHHHHHHHHHHH----------HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHhhCcchHHHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 567888899999888876 1356888999999999999999876543
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.12 E-value=66 Score=22.51 Aligned_cols=26 Identities=8% Similarity=0.026 Sum_probs=20.9
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
+.....+=|+++++|+++|.+.|...
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 45667888999999999999887654
No 34
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.28 E-value=99 Score=23.02 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
+.|++|.++ -.+.....+-|++.++|+++|.+.|..+
T Consensus 31 e~I~~Lv~M----------GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 31 ESINQLVYM----------GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHH----------SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345666665 1466888899999999999999988765
No 35
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.93 E-value=28 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 118 NDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 118 ~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
.+.....+=|+++++|+++|.+.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 35678888999999999999988754
No 36
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.29 E-value=61 Score=20.47 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=19.5
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+.....+=|+++++|+++|.+.|.
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456777888999999999988764
No 37
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.27 E-value=82 Score=22.23 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMF 141 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L 141 (411)
+.+.+|...-. .++.....||.+.+||++.|+..+
T Consensus 19 ~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56777775432 367889999999999999998775
No 38
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.45 E-value=1.3e+02 Score=26.05 Aligned_cols=64 Identities=8% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHH-----HhcCHhhhcceEEcCCCchhHHHccCCC
Q 015210 256 ARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVK-----AFLDARTLAKIQVLGSNYLSNLHELIDP 323 (411)
Q Consensus 256 ~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~lik-----pfL~~kt~~KI~~~~~~~~~~L~e~Id~ 323 (411)
+++-+-.++...|-.+- -+.|.++|..-+++-++.+++ -|+++..++.+.+..+ .+++.+++.|
T Consensus 121 TLdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~--~ee~~~~l~~ 189 (189)
T 3sbx_A 121 TLDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN--LDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS--HHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC--HHHHHHHhcC
Confidence 46666666655555442 268999998767766666554 4899999999999976 7888877654
No 39
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=26.44 E-value=98 Score=21.84 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
+.|++||+... ..-...-.-|..+++|+++|+..|+.-
T Consensus 11 ~~Vk~LRe~TG---------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTG---------YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHC---------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56888888743 133556678889999999999998754
No 40
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=25.93 E-value=1.5e+02 Score=21.83 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHH
Q 015210 98 QLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYL 145 (411)
Q Consensus 98 ~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l 145 (411)
.-+.+|.+++......|..-.|...|.+||....++-+. .+...+.+
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~-~e~vkral 66 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL-IETTNRAI 66 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH-HHHHHHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 347899999999999999888999999999997776554 44444443
No 41
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.21 E-value=1.4e+02 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=20.9
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
+.....+=|+++++|+++|.+.|..+
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45677788888889999998887765
No 42
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=24.14 E-value=37 Score=31.53 Aligned_cols=33 Identities=27% Similarity=0.084 Sum_probs=25.5
Q ss_pred CccccceEEEEecChhHHHHHHHHHHhcCHhhh
Q 015210 271 YPETLHRLFIINAGSAFRMLWKVVKAFLDARTL 303 (411)
Q Consensus 271 YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~ 303 (411)
....=..|+|||+||.+....+-+.|+|.+...
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 344456899999999999888888887766443
No 43
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=24.06 E-value=46 Score=22.71 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 95 KDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 95 ~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.++.+++|+++. | ..|...+-.-|++++++++.|+..|..
T Consensus 11 e~~~~~~~L~~MF------P--~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMF------P--DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHS------T--TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHc------c--cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3456677777764 2 368899999999999999998877654
No 44
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=23.30 E-value=38 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=17.4
Q ss_pred CCCCccccccceeEEEEee
Q 015210 384 TEEPHLLCKDVYLYSLSTD 402 (411)
Q Consensus 384 ~e~~~~~~~~~g~y~~~fd 402 (411)
+..|-++|-.+|.|++.|-
T Consensus 39 ~~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 39 TSTGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp TTTTEEECSSCEEEEEEEE
T ss_pred CCCCEEEcccCCEEEEEEE
Confidence 5789999999999999985
No 45
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=23.23 E-value=38 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=17.4
Q ss_pred CCCCccccccceeEEEEee
Q 015210 384 TEEPHLLCKDVYLYSLSTD 402 (411)
Q Consensus 384 ~e~~~~~~~~~g~y~~~fd 402 (411)
+..|-|+|-.+|.|++.|-
T Consensus 38 ~~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 38 PRSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp TTTTEEECSSCEEEEEEEE
T ss_pred CCCCEEECCcCeEEEEEEE
Confidence 6789999999999999985
No 46
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=23.02 E-value=39 Score=27.34 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=17.8
Q ss_pred CCCCccccccceeEEEEeeC
Q 015210 384 TEEPHLLCKDVYLYSLSTDS 403 (411)
Q Consensus 384 ~e~~~~~~~~~g~y~~~fd~ 403 (411)
+..|-|+|-.+|.|.+.|-.
T Consensus 35 ~~TG~Ftap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 35 NHSGRFVCTVPGYYYFTFQV 54 (134)
T ss_dssp TTTTEEECCSCEEEEEEEEE
T ss_pred CCCCEEECeeCCEEEEEEEE
Confidence 67899999999999999853
No 47
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.82 E-value=1.3e+02 Score=22.20 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHH
Q 015210 96 DEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNY 144 (411)
Q Consensus 96 ~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~ 144 (411)
..+.|++|-++ + .+..-..+=|+++++|++.|.+.|..+
T Consensus 29 ~e~~i~~L~~M----G------F~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTEM----G------FPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHH----T------CCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHc----C------CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34456666664 1 345777888999999999999887665
No 48
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.61 E-value=1.8e+02 Score=20.81 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.6
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+.....+=|+++++|+++|++.|..
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5577788899999999999987754
No 49
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=21.34 E-value=2.3e+02 Score=24.60 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHH
Q 015210 99 LVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLN 143 (411)
Q Consensus 99 ~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~ 143 (411)
+...|.+.|.+..+|+ +....-|--||.+-..+++.|...++.
T Consensus 21 CM~~l~~~Lr~~~hL~--h~gR~ql~lFLkgiGls~ee~l~f~r~ 63 (194)
T 3lgb_A 21 CIKNLMEGLKKNHHLR--YYGRQQLSLFLKGIGLSADEALKFWSE 63 (194)
T ss_dssp HHHHHHHHHHHHSCCC--HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC--chhHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455555566656664 345677899999999999999999775
No 50
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=21.19 E-value=84 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=15.7
Q ss_pred CHHHHHhhhhccCCCHHHHHHHHH
Q 015210 119 DYHTLLRFLRMRDFDISKSKEMFL 142 (411)
Q Consensus 119 dd~~LlRFLra~kfdv~kA~~~L~ 142 (411)
+..-...-|+.++||+++|.+.|.
T Consensus 176 ~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 176 DRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHh
Confidence 445566667777777777776654
No 51
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.65 E-value=2.8e+02 Score=21.41 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHH
Q 015210 238 TTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVV 294 (411)
Q Consensus 238 ~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~li 294 (411)
-.+|+|+++++. ++...+..+..+.+.++. +=..+.++|++.-+.-++.+.
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKSISS----SGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHc
Confidence 358999999885 565556666666555543 336899999998887777654
No 52
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=20.16 E-value=3.2e+02 Score=21.42 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHH
Q 015210 238 TTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVV 294 (411)
Q Consensus 238 ~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~li 294 (411)
-.+|+||++++. ++...+..+..+.+.++ .+=..++++|++.-+.-++...
T Consensus 65 ~~vvlDls~v~~--iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 115 (143)
T 3llo_A 65 HTVILDFTQVNF--MDSVGVKTLAGIVKEYG----DVGIYVYLAGCSAQVVNDLTSN 115 (143)
T ss_dssp SEEEEECTTCCC--CCHHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHHT
T ss_pred eEEEEECCCCcc--ccHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHhC
Confidence 368999999874 66556666666665554 3557899999987776555543
No 53
>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} SCOP: g.6.1.1 PDB: 2bbg_A 3bbg_A
Probab=20.11 E-value=16 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCCccccccceeEEEEeeCCC
Q 015210 385 EEPHLLCKDVYLYSLSTDSQN 405 (411)
Q Consensus 385 e~~~~~~~~~g~y~~~fd~~~ 405 (411)
|.+-.-|++||+|-+.+|+..
T Consensus 13 ek~~YCcS~~GrYCVCYeS~~ 33 (40)
T 1bbg_A 13 KVGKYCCSPIGKYCVCYDSKA 33 (40)
T ss_dssp CTTSEEECSSSSSCEEESSHH
T ss_pred ccCceecCCCCceEEEechHH
Confidence 556677999999999999764
Done!