BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015211
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 56/279 (20%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LW+P V C + + Y PS SS S+ L+
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV- 225
++ Y + +SS G L +D + G ++KN V A V
Sbjct: 78 TPFKIG-------------------YGDGSSSQGTLYKDTVGF---GGVSIKNQVLADVD 115
Query: 226 -------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD 275
I+G G K ++GG D +VP L K G+I +N++S+ +
Sbjct: 116 STSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQGVIAKNAYSLYLN 160
Query: 276 KDD--SGRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIGSSCLKQTSFKAIV 330
D +G+I FG A + S S +A ++ + + +G + + + + ++
Sbjct: 161 SPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVSGKTINTDNVDVLL 217
Query: 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKC 369
DSG++ T+L +++ + I F+ ++ Y C
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC 256
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 116/265 (43%), Gaps = 56/265 (21%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LW+P + C + + Y PS SS S+ L+
Sbjct: 18 ITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV- 225
P+++ Y + +SS G L +D + G ++KN V A V
Sbjct: 78 ------------------TPFSIG-YGDGSSSQGTLYKDTVGF---GGVSIKNQVLADVD 115
Query: 226 -------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD 275
I+G G K ++GG D +VP L K G+I +N++S+ +
Sbjct: 116 STSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQGVIAKNAYSLYLN 160
Query: 276 KDDS--GRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIGSSCLKQTSFKAIV 330
DS G+I FG A + S S +A ++ + + +G + + + + ++
Sbjct: 161 SPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVSGKTINTDNVDVLL 217
Query: 331 DSGSSFTFLPKEVYETIAAEFDRQV 355
DSG++ T+L +++ + I F+ ++
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNGKL 242
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 58/333 (17%)
Query: 98 DFGWLHY-TWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSP 156
D L Y T I+ TP VS + +D G LW+ CD +Y +S R + +
Sbjct: 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--------QNYVSSTYRPVRCRT- 66
Query: 157 SASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLIS-GGDN 215
S S S ++C C N C + NT++ G + ED++ + S G +
Sbjct: 67 SQCSLSGSIACGDCFNGPRPGCNN--NTCGVFPENPVINTATGGEVAEDVVSVESTDGSS 124
Query: 216 ALKNSVQASVIIGCGMKQSGGYLDGVAPD--GLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
+ + I C L +A G+ GLG I++PS A A + F+MC
Sbjct: 125 SGRVVTVPRFIFSCAPTS---LLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 274 FDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNGK-YITYIIG 310
S I FG+ P T STS ++ G+ + Y IG
Sbjct: 182 LSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 311 VETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEFDRQ-VNDTI 359
V++ I S + TS +I +G + +T L +Y+ + F ++ I
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 360 TSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 387
T P+ C+ + S RL P +PS+ L+
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 58/333 (17%)
Query: 98 DFGWLHY-TWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSP 156
D L Y T I+ TP VS + +D G LW+ CD +Y +S R + +
Sbjct: 16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--------QNYVSSTYRPVRCRT- 66
Query: 157 SASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLIS-GGDN 215
S S S ++C C N C + NT++ G + ED++ + S G +
Sbjct: 67 SQCSLSGSIACGDCFNGPRPGCNN--NTCGVFPENPVINTATGGEVAEDVVSVESTDGSS 124
Query: 216 ALKNSVQASVIIGCGMKQSGGYLDGVAPD--GLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
+ + I C L +A G+ GLG I++PS A A + F+MC
Sbjct: 125 SGRVVTVPRFIFSCAPTS---LLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 274 FDKDDSGR--IFFGDQGPAT--------------------QQSTSFLASNGK-YITYIIG 310
S I FG+ P T STS ++ G+ + Y IG
Sbjct: 182 LSGSTSSNSVIIFGND-PYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 311 VETCCIGSSCLK-QTSFKAIVDSG---------SSFTFLPKEVYETIAAEFDRQ-VNDTI 359
V++ I S + TS +I +G + +T L +Y+ + F ++ I
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 360 TSFEGY-PWKCCYKSS---SQRL-PKLPSVKLM 387
T P+ C+ + S RL P +PS+ L+
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLV 333
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 56/280 (20%)
Query: 76 KTGPQFQMLFPSQGSKTMSLGNDFGWL---------HYTWIDIGTPNVSFLVALDAGSDL 126
+ GP++ SQ K ++LGN + +Y I IGTP +F V D GS
Sbjct: 32 RLGPEW-----SQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSN 86
Query: 127 LWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPC 185
+W+P +C+ L +A Y+ L + S SS+ KH
Sbjct: 87 VWVPSS--KCSRLYTACVYHKL------FDASDSSSYKH------------------NGT 120
Query: 186 PYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDG 245
T+ Y T SG L +DI+ + GG + + + + + DGV G
Sbjct: 121 ELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFGEVTEMPALPFMLA--EFDGVVGMG 174
Query: 246 LIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS------GRIFFGDQGPATQQSTSF 297
I +G ++ +++++ L + FS +++D G+I G P +
Sbjct: 175 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFH 234
Query: 298 LASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSF 336
+ K + I ++ +GSS L + A+VD+G+S+
Sbjct: 235 YINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASY 274
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 37/239 (15%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDD- 278
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSL 167
Query: 279 SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSGSSF 336
G+I G P + + K + I ++ +GSS L + A+VD+G+S+
Sbjct: 168 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASY 226
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 68/254 (26%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I IGTP F V D GS LW+P + C +++ ++ + + P SST ++L
Sbjct: 17 IYIGTPPQEFTVVFDTGSSDLWVP--SIYCK-------SNVCKNHHRFDPRKSSTFRNLG 67
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 226
P ++ Y T S G L D + + N V +
Sbjct: 68 ------------------KPLSIHYGT--GSMEGFLGYDTV--------TVSNIVDPNQT 99
Query: 227 IGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFDKDDS 279
+G +Q G DG++GL E SVP +++ + + R+ FS+ D++
Sbjct: 100 VGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQ 159
Query: 280 GRIF-FGDQGPA------------TQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSF 326
G + G P+ QQ F + I GV C+G
Sbjct: 160 GSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDS----VTINGVAVACVGGC------- 208
Query: 327 KAIVDSGSSFTFLP 340
+AI+D+G+S F P
Sbjct: 209 QAILDTGTSVLFGP 222
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 101/274 (36%), Gaps = 57/274 (20%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
GS ++L ND ++ I IGTP F V D GS +LW+P +C A +S+
Sbjct: 1 GSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSS--KCINSKACRAHSM- 57
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLV---ED 205
Y S SST K + GT ++++++ + G LV +D
Sbjct: 58 -----YESSDSSTYKENGTFGAII-YGTGS---------ITGFFSQDSVTIGDLVVKEQD 102
Query: 206 ILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVP---SLLAK 262
+ DN + + DG++GL ISVP ++L +
Sbjct: 103 FIEATDEADNVFLHRLF---------------------DGILGLSFQTISVPVWYNMLNQ 141
Query: 263 AGLIRNSFSMCF----DKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGS 318
+ FS D+++ G + FG P + + G+ IG
Sbjct: 142 GLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGD 201
Query: 319 SCLKQTSF-----KAIVDSGSSFTFLPKEVYETI 347
K T F +A DSG+S P + I
Sbjct: 202 ---KSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 67
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 68 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 105
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 106 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 163
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 164 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 223
Query: 333 GSSF 336
G+S+
Sbjct: 224 GASY 227
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 64
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 65 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 102
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 103 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 160
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 161 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 220
Query: 333 GSSF 336
G+S+
Sbjct: 221 GASY 224
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 67/270 (24%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I IG+ F V +D GS LW+P V C + Y+P +S+TS++L
Sbjct: 18 ITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTSQNLG 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 226
P+ + Y + +SS G L +D + G ++ V A +
Sbjct: 78 ------------------TPFYIG-YGDGSSSQGTLYKDTVGF---GGASITKQVFADI- 114
Query: 227 IGCGMKQSGGYLDGVAPDGLIGLGL------GEI-SVPSLLAKAGLI-RNSFSMCFDKDD 278
K S P G++G+G G+ +VP L G+I +N++S+ + +
Sbjct: 115 ----TKTS-------IPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPN 163
Query: 279 --SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAI------- 329
+G+I FG A KY +I V + S KA+
Sbjct: 164 AATGQIIFGGVDKA------------KYSGSLIAVPVTSDRELRITLNSLKAVGKNINGN 211
Query: 330 ----VDSGSSFTFLPKEVYETIAAEFDRQV 355
+DSG++ T+L ++V + I F ++
Sbjct: 212 IDVLLDSGTTITYLQQDVAQDIIDAFQAEL 241
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 68
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 69 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 106
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 107 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 164
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 165 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 224
Query: 333 GSSF 336
G+S+
Sbjct: 225 GASY 228
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 167
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 168 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 227
Query: 333 GSSF 336
G+S+
Sbjct: 228 GASY 231
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPL-SASYYNSLDRDLNEYSPSASST 161
+Y I IGTP +F V D GS +W+P +C+ L +A Y+ L + S SS+
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRLYTACVYHKL------FDASDSSS 71
Query: 162 SKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
KH T+ Y T SG L +DI+ + GG +
Sbjct: 72 YKH------------------NGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKDDS 279
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLA--EFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSE 167
Query: 280 ------GRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDS 332
G+I G P + + K + I ++ +GSS L + A+VD+
Sbjct: 168 NSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDT 227
Query: 333 GSSF 336
G+S+
Sbjct: 228 GASY 231
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 101/276 (36%), Gaps = 53/276 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAE 350
+G + S A +D+G+S LP + E I AE
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 101/276 (36%), Gaps = 53/276 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAE 350
+G + S A +D+G+S LP + E I AE
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 101/276 (36%), Gaps = 53/276 (19%)
Query: 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD 148
G + L N +YT I +GTP +F V LD GS LW+P + C L+ ++ D
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSN--ECGSLACFLHSKYD 58
Query: 149 RDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILH 208
+ +S+S + + GT S G + +D L
Sbjct: 59 HE--------ASSSYKANGTEFAIQYGTG-------------------SLEGYISQDTLS 91
Query: 209 LISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL-------LA 261
+ GD + A G+ + G DG+ +GLG ISV + +
Sbjct: 92 I---GDLTIPKQDFAEATSEPGLTFAFGKFDGI-----LGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 KAGLIRNSFSMCF-----DKDDSGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETC 314
+ L F+ D ++ G FG D+ T Y + + E
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAY--WEVKFEGI 201
Query: 315 CIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAE 350
+G + S A +D+G+S LP + E I AE
Sbjct: 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE 237
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 59/276 (21%)
Query: 96 GNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY 154
GND +Y + IGTP F + D GS LWI C C +Y
Sbjct: 12 GNDI--EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQT-----------KY 58
Query: 155 SPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGD 214
P+ SST + + + Y + +S+SG+L +D ++L G
Sbjct: 59 DPNQSSTYQADGRTWSIS-------------------YGDGSSASGILAKDNVNL---GG 96
Query: 215 NALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLI 266
+K I +++ + G DGL+GLG I+ + +L+++ +
Sbjct: 97 LLIKGQT-----IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
Query: 267 RNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCCIGSSC 320
R F + K + G+ ST F S + + I V+ +G+S
Sbjct: 151 RPIFGVYLGK--AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTST 208
Query: 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVN 356
+ +SF I+D+G++ LP + ++A + N
Sbjct: 209 VA-SSFDGILDTGTTLLILPNNIAASVARAYGASDN 243
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSH 169
+ LS ++
Sbjct: 69 QELSITY 75
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSH 169
+ LS ++
Sbjct: 69 QELSITY 75
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 68
Query: 163 KHLSCSH 169
+ LS ++
Sbjct: 69 QELSITY 75
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ S +N + D S + +TS
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACSDHNQFNPD---DSSTFEATS 112
Query: 163 KHLSCSH 169
+ LS ++
Sbjct: 113 QELSITY 119
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 59/276 (21%)
Query: 96 GNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY 154
GND +Y + IGTP F + D GS LWI C C +Y
Sbjct: 12 GNDI--EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG-----------SGQTKY 58
Query: 155 SPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGD 214
P+ SST + + + Y + +S+SG+L +D ++L G
Sbjct: 59 DPNQSSTYQADGRTWSIS-------------------YGDGSSASGILAKDNVNL---GG 96
Query: 215 NALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--------VPSLLAKAGLI 266
+K I +++ + G DGL+GLG I+ + +L+++ +
Sbjct: 97 LLIKGQT-----IELAKREAASFASG-PNDGLLGLGFDTITTVRGVKTPMDNLISQGLIS 150
Query: 267 RNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLAS------NGKYITYIIGVETCCIGSSC 320
R F + K + G+ ST F S + + I V+ +G+S
Sbjct: 151 RPIFGVYLGK--AKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTST 208
Query: 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVN 356
+ +SF I+D+G++ LP + ++A + N
Sbjct: 209 VA-SSFDGILDTGTTLLILPNNIAASVARAYGASDN 243
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ N V +D GS LWIP V C P + YSP++S TS++L+
Sbjct: 18 ITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLN 77
Query: 167 C 167
Sbjct: 78 T 78
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASST 161
++ I IGTP F V D GS LW+P V C+ L+ S D N+++P SST
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACS-------DHNQFNPDDSST 107
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASST 161
++ I IGTP F V D GS LW+P V C+ L+ S D N+++P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACS-------DHNQFNPDDSST 63
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASST 161
++ I IGTP F V D GS LW+P V C+ L+ S D N+++P SST
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVP--SVYCSSLACS-------DHNQFNPDDSST 63
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ + +N + E S + STS
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVP--SVYCSSLACTNHNRFNP---EDSSTYQSTS 68
Query: 163 KHLSCSH 169
+ +S ++
Sbjct: 69 ETVSITY 75
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
++ I IGTP F V D GS LW+P V C+ L+ + +N + E S + STS
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVP--SVYCSSLACTNHNRFNP---EDSSTYQSTS 68
Query: 163 KHLSCSH 169
+ +S ++
Sbjct: 69 ETVSITY 75
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 40/166 (24%)
Query: 93 MSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLN 152
++L N ++ I +GTP F V D GS LW+P +C A Y +S
Sbjct: 44 VALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVP--SAKCYFSIACYLHS------ 95
Query: 153 EYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISG 212
Y ASST K K P + Y T S +G ED + +
Sbjct: 96 RYKAGASSTYK------------------KNGKPAAIQYGT--GSIAGYFSEDSVTV--- 132
Query: 213 GDNALKNS--VQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV 256
GD +K+ ++A+ K+ G DG++GLG EISV
Sbjct: 133 GDLVVKDQEFIEAT-------KEPGITFLVAKFDGILGLGFKEISV 171
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 35/178 (19%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+Y I IGTP +F V D GS +W+P +C+ L
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSS--KCSRL----------------------- 54
Query: 163 KHLSCS-HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSV 221
+ +C H+L D S T+ Y T SG L +DI+ + GG +
Sbjct: 55 -YTACVYHKLFDASDSSSYKHNGTELTLRYSTGTV--SGFLSQDIITV--GGITVTQMFG 109
Query: 222 QASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKD 277
+ + + + DGV G I +G ++ +++++ L + FS +++D
Sbjct: 110 EVTEMPALPFMLAE--FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 48/272 (17%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+Y I IGTP +F V D GS LW+P +C+ L
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPS--TKCSRL----------------------- 51
Query: 163 KHLSCS-HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKN-- 219
+L+C H L + S + +T+ Y + G L +D + + GG +
Sbjct: 52 -YLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVK--GFLSQDSVTV--GGITVTQTFG 106
Query: 220 SVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS--VPSLLAKAGLIRNSFSMCFDKD 277
V +I + Q DGV G +G ++ +L++ L FS+ +++
Sbjct: 107 EVTQLPLIPFMLAQ----FDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRG 162
Query: 278 D---SGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAIVDSG 333
G + G P Q S K ++ I ++ +GSS L + + +VD+G
Sbjct: 163 PHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTG 222
Query: 334 SSFTFLP----KEVYETIAAEFDRQVNDTITS 361
SSF P K + + + A+ ++++++ + S
Sbjct: 223 SSFISAPTSSLKLIMQALGAK-EKRLHEYVVS 253
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 112/316 (35%), Gaps = 48/316 (15%)
Query: 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASST 161
LH+ + TP + V +D + LW+ C+ S+ Y +P ST
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCE----QQYSSKTYQ---------APFCHST 68
Query: 162 SKHLSCSHRL--CDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDIL--HLISGGDNAL 217
+ +H+ C + K C + G L ED+L H G L
Sbjct: 69 QCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128
Query: 218 KNSVQA-SVIIGCG---MKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMC 273
V + C + Q G + G+ GLG IS+P+ LA ++ F+ C
Sbjct: 129 GPLVTVPQFLFSCAPSFLVQKGLPRNT---QGVAGLGHAPISLPNQLASHFGLQRQFTTC 185
Query: 274 FDK--DDSGRIFFGDQGPATQQ------------STSFLASNGKYITYIIGVETCC---- 315
+ G I FGD +Q + + G+Y + +
Sbjct: 186 LSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVF 245
Query: 316 ----IGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCY 371
I S+ + TS ++ + + L + VY+ F +Q+ P+ C+
Sbjct: 246 PLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCF 305
Query: 372 KSSSQRLPKLPSVKLM 387
S+ ++ PSV L+
Sbjct: 306 NSN--KINAYPSVDLV 319
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSAS 159
++ I IGTP +FLV D GS LW+P C C S ++PS S
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHS------------RFNPSES 61
Query: 160 ST 161
ST
Sbjct: 62 ST 63
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 114/293 (38%), Gaps = 67/293 (22%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ V +D GS LW+ C + N+ + + PS+SS++++L+
Sbjct: 18 IVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVI 226
+ Y + TSS G +D + G ++KN A V
Sbjct: 78 QDFSI-------------------EYGDLTSSQGSFYKDTVGF---GGISIKNQQFADVT 115
Query: 227 IGCGMKQSGGYLDGVAPDGLIGLGLGE--------ISVPSLLAKAGLI-RNSFSMCFDKD 277
G++G+G +VP L K G+I +N++S+ + +
Sbjct: 116 TTS------------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSE 163
Query: 278 D--SGRIFFG--DQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSG 333
D +G+I FG D T T+ ++ + +G G+S T+ ++DSG
Sbjct: 164 DASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLG-SINFDGTSV--STNADVVLDSG 220
Query: 334 SSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKL 386
++ T+ ++ A +F R V G W S + +LPS L
Sbjct: 221 TTITYFS----QSTADKFARIV--------GATWD-----SRNEIYRLPSCDL 256
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 31/185 (16%)
Query: 192 YTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 251
YT+ S +G + ED++ + G + + V I + +L G+ +G++GL
Sbjct: 72 YTQG-SWTGFVGEDLVTIPKGFNTSFL------VNIATIFESENFFLPGIKWNGILGLAY 124
Query: 252 GEISVPS---------LLAKAGLIRNSFSMCF---------DKDDSGRIFFGDQGPATQQ 293
++ PS L+ +A I N FSM + G + G P+ +
Sbjct: 125 ATLAKPSSSLETFFDSLVTQAN-IPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYK 183
Query: 294 STSFLASNGKYITYIIGVETCCIGSS-----CLKQTSFKAIVDSGSSFTFLPKEVYETIA 348
+ + Y I + IG C + + KAIVDSG++ LP++V++ +
Sbjct: 184 GDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV 243
Query: 349 AEFDR 353
R
Sbjct: 244 EAVAR 248
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 92 TMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDL 151
T + N+ +Y I IGTP SF V D GS LW+ C+ + S +
Sbjct: 3 TEQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSS--HCSAQACSNH------- 53
Query: 152 NEYSPSASST 161
N++ P SST
Sbjct: 54 NKFKPRQSST 63
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP 130
+Y I IGTP F V D GS LW+P
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVP 42
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 50/181 (27%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSASSTSK 163
I +GTP F V D GS W+P C C ++ + P SST +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC------------KNHQRFDPRKSSTFQ 67
Query: 164 HLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQA 223
+L P ++ Y T S G+L D + + N V
Sbjct: 68 NLG------------------KPLSIHYGT--GSMQGILGYDTV--------TVSNIVDI 99
Query: 224 SVIIGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFDK 276
+G ++ G + DG++G+ E S+P +++ + + ++ FS+ D+
Sbjct: 100 QQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR 159
Query: 277 D 277
+
Sbjct: 160 N 160
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 245 GLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQG---PATQQS---TSFL 298
G+ GL +++PS +A A + N F +C G FG P QS T +
Sbjct: 141 GVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLV 200
Query: 299 ASNGKYITYI----IGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQ 354
A G YI I VE + S + ++ + + L ++VY + F +
Sbjct: 201 AKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKA 260
Query: 355 V 355
+
Sbjct: 261 L 261
>pdb|1TYE|B Chain B, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|D Chain D, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|F Chain F, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 440
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 98 DFGWLHYTW-IDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYS 155
DF Y + IGTP FL+ D GS W+P C + S + +
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRF---------FD 64
Query: 156 PSASSTSK 163
PSASST K
Sbjct: 65 PSASSTFK 72
>pdb|3NID|B Chain B, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|D Chain D, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|B Chain B, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|D Chain D, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
Length = 471
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 472
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|2VC2|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|B Chain B, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|B Chain B, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
pdb|3FCU|B Chain B, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|D Chain D, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|F Chain F, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
Length = 461
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 21 GAETVMFSTKLIHRFSEEVKALGVSKNRNA 50
G + V+ T + RF+EEVK VS+NR+A
Sbjct: 189 GYKHVLTLTDQVTRFNEEVKKQSVSRNRDA 218
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 98 DFGWLHYTW-IDIGTPNVSFLVALDAGSDLLWIP---CD----CVR---CAPLSASYYNS 146
DF Y + IGTP F + D GS W+P CD CV P S+S +
Sbjct: 14 DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKE 73
Query: 147 LDRDLN 152
D +LN
Sbjct: 74 TDYNLN 79
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 108/304 (35%), Gaps = 52/304 (17%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ + + + Y
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIY-- 58
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 59 --------TPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 102
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 103 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFF 144
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 145 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 204
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 205 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 257
Query: 378 LPKL 381
LP
Sbjct: 258 LPSF 261
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 108/304 (35%), Gaps = 51/304 (16%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ S+ S
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWV---------FSSETTAS 51
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
Y+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 52 EVDGQTIYTPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 103
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 104 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQXKTFF 145
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 146 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 205
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 206 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 258
Query: 378 LPKL 381
LP
Sbjct: 259 LPSF 262
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 108/304 (35%), Gaps = 51/304 (16%)
Query: 87 SQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNS 146
S GS T + + + T + IGTP + + D GS LW+ S+ S
Sbjct: 1 STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWV---------FSSETTAS 51
Query: 147 LDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDI 206
Y+PS S+T+K LS + T + + D YT+ S GL V
Sbjct: 52 EVDGQTIYTPSKSTTAKLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG- 103
Query: 207 LHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL------ 260
QA + K S + + DGL+GL ++ S
Sbjct: 104 ---------------QA---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFF 145
Query: 261 --AKAGLIRNSFSMCFDKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIG 317
AKA L F+ G FG A S ++ A + K + +G
Sbjct: 146 DNAKASLDSPVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVG 205
Query: 318 SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQR 377
S K TS I D+G++ +LP V A+ + +S GY + C S
Sbjct: 206 SGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SAT 258
Query: 378 LPKL 381
LP
Sbjct: 259 LPSF 262
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 102/288 (35%), Gaps = 52/288 (18%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTS 162
+ T + IGTP + + D GS LW+ + + + Y +PS S+T+
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIY----------TPSKSTTA 66
Query: 163 KHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQ 222
K LS + T + + D YT+ S GL V Q
Sbjct: 67 KLLSGA-------TWSISYGDGSSSSGDVYTDTVSVGGLTVTG----------------Q 103
Query: 223 ASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL--------AKAGLIRNSFSMCF 274
A + K S + + DGL+GL ++ S AKA L F+
Sbjct: 104 A---VESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADL 160
Query: 275 DKDDSGRIFFG-DQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSG 333
G FG A S ++ A + K + +GS K TS I D+G
Sbjct: 161 GYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTG 220
Query: 334 SSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKL 381
++ +LP V A+ + +S GY + C S LP
Sbjct: 221 TTLLYLPATVVSAYWAQVSGAKSS--SSVGGYVFPC-----SATLPSF 261
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 46/258 (17%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
I +G+ V +D GS LW+P V C N ++ YSPS+SS+S++L+
Sbjct: 18 ITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPN-FCKNEGTYSPSSSSSSQNLN 76
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHL--ISGGDNALKNSVQAS 224
P++++ Y + T+S G +D + IS + S
Sbjct: 77 ------------------SPFSIE-YGDGTTSQGTWYKDTIGFGGISITKQQFADVTSTS 117
Query: 225 V---IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD--K 276
V I+G G K ++ G D +VP L G+I +N++S+ + +
Sbjct: 118 VDQGILGIGYKTHEAEGNYD---------------NVPVTLKNQGIISKNAYSLYLNSRQ 162
Query: 277 DDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSF 336
SG+I FG A T I + T + + ++DSG++
Sbjct: 163 ATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSIN-ADVDVLLDSGTTI 221
Query: 337 TFLPKEVYETIAAEFDRQ 354
T+L + V + + + F+ Q
Sbjct: 222 TYLQQGVADQVISAFNGQ 239
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 103 HYTWIDIGTPNVSFLVALDAGSDLLWIP 130
++ I IG+P +F V D GS LW+P
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVP 52
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 50/181 (27%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIP---CDCVRCAPLSASYYNSLDRDLNEYSPSASSTSK 163
I +GTP F V D GS W+P C C ++ + P SST +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC------------KNHQRFDPRKSSTFQ 67
Query: 164 HLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQA 223
+L P ++ Y T S G+L D + + N V
Sbjct: 68 NLG------------------KPLSIHYGT--GSMQGILGYDTV--------TVSNIVDI 99
Query: 224 SVIIGCGMKQSGGYLDGVAPDGLIGLGL----GEISVP---SLLAKAGLIRNSFSMCFDK 276
+G ++ G DG++G+ E S+P +++ + + ++ FS+ D+
Sbjct: 100 QQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR 159
Query: 277 D 277
+
Sbjct: 160 N 160
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 109 IGTPNVSFLVALDAGSDLLWIP---CDCVRCA 137
IGT F+ D GS LW+P CD + C+
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCS 53
>pdb|3EQA|A Chain A, Catalytic Domain Of Glucoamylase From Aspergillus Niger
Complexed With Tris And Glycerol
Length = 470
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 172 CDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNAL----KNSVQASVII 227
D G +P P DY+ T SGL+++ ++ L GD +L +N + A I+
Sbjct: 32 ADSGIVVASPSTDNP---DYFYTWTRDSGLVLKTLVDLFRNGDTSLLSTIENYISAQAIV 88
Query: 228 GCGMKQSGGYLDGVAPDGLIGLGLGE 253
G+ G L G GLGE
Sbjct: 89 Q-GISNPSGDLSS-------GAGLGE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,820,484
Number of Sequences: 62578
Number of extensions: 496037
Number of successful extensions: 1208
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 91
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)