Query 015211
Match_columns 411
No_of_seqs 274 out of 1651
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7E-58 1.5E-62 461.1 36.8 354 15-407 13-386 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.2E-50 2.7E-55 405.9 30.7 294 95-408 39-348 (398)
3 cd05478 pepsin_A Pepsin A, asp 100.0 9.2E-48 2E-52 374.6 28.1 264 94-406 2-276 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 4.2E-47 9E-52 371.2 28.2 262 97-406 1-276 (325)
5 PTZ00165 aspartyl protease; Pr 100.0 1.1E-46 2.3E-51 382.2 30.9 264 90-405 108-393 (482)
6 cd05485 Cathepsin_D_like Cathe 100.0 3.9E-46 8.4E-51 364.8 28.3 266 94-407 3-281 (329)
7 cd05488 Proteinase_A_fungi Fun 100.0 2.6E-46 5.7E-51 364.8 26.6 264 94-406 2-275 (320)
8 cd05477 gastricsin Gastricsins 100.0 1.1E-45 2.3E-50 360.2 28.1 257 100-405 1-270 (318)
9 cd05487 renin_like Renin stimu 100.0 1.4E-45 3E-50 360.6 27.3 263 95-407 1-277 (326)
10 cd05486 Cathespin_E Cathepsin 100.0 1.2E-45 2.7E-50 359.4 26.6 253 103-405 1-266 (316)
11 cd06098 phytepsin Phytepsin, a 100.0 1.8E-45 3.8E-50 358.4 27.3 254 94-407 2-269 (317)
12 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-44 2.9E-49 353.6 26.6 260 101-407 2-283 (326)
13 cd05472 cnd41_like Chloroplast 100.0 1.3E-43 2.9E-48 342.6 26.5 239 102-404 1-250 (299)
14 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-43 3.5E-48 349.3 27.2 272 109-407 2-317 (362)
15 PTZ00147 plasmepsin-1; Provisi 100.0 2.5E-43 5.4E-48 355.1 28.5 264 89-405 126-401 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.6E-41 3.6E-46 341.2 29.3 263 89-404 125-399 (450)
17 cd06097 Aspergillopepsin_like 100.0 1.7E-41 3.7E-46 324.5 25.7 239 103-388 1-251 (278)
18 cd05473 beta_secretase_like Be 100.0 1.2E-41 2.7E-46 337.6 25.5 265 101-405 2-298 (364)
19 cd05475 nucellin_like Nucellin 100.0 1E-40 2.2E-45 318.3 25.7 216 102-406 2-225 (273)
20 cd05471 pepsin_like Pepsin-lik 100.0 1.6E-38 3.5E-43 303.6 27.2 240 103-388 1-256 (283)
21 PF00026 Asp: Eukaryotic aspar 100.0 2E-39 4.3E-44 315.2 18.4 257 102-408 1-270 (317)
22 cd05476 pepsin_A_like_plant Ch 100.0 4.6E-38 9.9E-43 298.7 22.5 204 102-407 1-221 (265)
23 cd05474 SAP_like SAPs, pepsin- 100.0 1.5E-37 3.2E-42 299.6 24.6 224 101-406 1-248 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 4.2E-32 9E-37 239.0 14.7 157 103-286 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 3.4E-23 7.5E-28 169.8 12.4 107 105-249 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.6 4.5E-16 9.7E-21 136.7 8.2 102 306-407 1-118 (161)
27 cd05483 retropepsin_like_bacte 97.8 0.00014 2.9E-09 57.3 8.0 92 102-251 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.5 0.14 3.1E-06 42.4 9.5 35 95-131 4-38 (121)
29 PF13650 Asp_protease_2: Aspar 94.8 0.29 6.3E-06 37.4 9.0 24 106-131 2-25 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.7 0.34 7.3E-06 40.3 9.7 31 100-132 14-44 (124)
31 cd05484 retropepsin_like_LTR_2 91.9 0.2 4.4E-06 39.0 3.7 27 103-131 1-27 (91)
32 PF11925 DUF3443: Protein of u 89.8 4.6 9.9E-05 39.7 11.4 21 190-212 83-103 (370)
33 PF13975 gag-asp_proteas: gag- 85.7 1.8 3.8E-05 32.2 4.7 31 100-132 6-36 (72)
34 TIGR02281 clan_AA_DTGA clan AA 85.2 1.9 4.2E-05 35.6 5.2 35 305-347 10-44 (121)
35 cd05484 retropepsin_like_LTR_2 85.0 1.3 2.8E-05 34.4 3.9 29 314-347 5-33 (91)
36 PF13650 Asp_protease_2: Aspar 83.3 1.3 2.9E-05 33.6 3.3 29 314-347 3-31 (90)
37 PF00077 RVP: Retroviral aspar 83.1 1.9 4.2E-05 33.9 4.2 26 104-131 7-32 (100)
38 COG3577 Predicted aspartyl pro 82.3 18 0.00039 32.7 10.2 83 88-212 91-173 (215)
39 cd05483 retropepsin_like_bacte 80.8 3 6.5E-05 32.0 4.5 29 314-347 7-35 (96)
40 PF13975 gag-asp_proteas: gag- 80.7 2.5 5.3E-05 31.4 3.7 29 314-347 13-41 (72)
41 cd05482 HIV_retropepsin_like R 75.9 3.9 8.6E-05 31.7 3.7 23 107-131 3-25 (87)
42 cd06095 RP_RTVL_H_like Retrope 68.1 7.2 0.00016 29.9 3.6 23 107-131 3-25 (86)
43 cd06095 RP_RTVL_H_like Retrope 66.4 6.9 0.00015 30.0 3.2 29 314-347 3-31 (86)
44 cd05479 RP_DDI RP_DDI; retrope 63.9 8.2 0.00018 31.9 3.4 28 314-346 21-48 (124)
45 PF00077 RVP: Retroviral aspar 60.7 6 0.00013 31.0 1.9 26 314-344 10-35 (100)
46 COG3577 Predicted aspartyl pro 59.4 16 0.00035 32.9 4.5 34 304-345 103-136 (215)
47 cd05481 retropepsin_like_LTR_1 55.4 13 0.00027 29.1 2.9 31 314-348 3-33 (93)
48 PF09668 Asp_protease: Asparty 45.5 23 0.00051 29.4 3.1 29 314-347 29-57 (124)
49 COG5550 Predicted aspartyl pro 43.6 15 0.00034 30.3 1.7 20 328-347 29-49 (125)
50 PF09668 Asp_protease: Asparty 43.1 19 0.0004 30.0 2.2 35 101-137 23-58 (124)
51 PF12384 Peptidase_A2B: Ty3 tr 41.8 32 0.0007 30.0 3.5 26 106-131 36-61 (177)
52 TIGR03698 clan_AA_DTGF clan AA 39.3 22 0.00047 28.6 2.0 23 325-347 16-39 (107)
53 PF12384 Peptidase_A2B: Ty3 tr 32.8 1.2E+02 0.0025 26.6 5.4 24 324-347 44-67 (177)
54 TIGR03698 clan_AA_DTGF clan AA 29.2 75 0.0016 25.4 3.6 27 105-131 2-33 (107)
55 PF08284 RVP_2: Retroviral asp 29.2 1.2E+02 0.0026 25.4 5.0 18 326-343 33-50 (135)
56 PF15240 Pro-rich: Proline-ric 28.5 37 0.00081 30.0 1.8 19 6-24 2-20 (179)
57 cd05474 SAP_like SAPs, pepsin- 23.7 68 0.0015 30.2 2.9 25 313-340 6-30 (295)
58 cd00303 retropepsin_like Retro 21.0 1.5E+02 0.0032 20.7 3.7 22 325-346 9-30 (92)
59 cd05487 renin_like Renin stimu 20.9 89 0.0019 30.2 3.1 32 305-342 7-38 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7e-58 Score=461.12 Aligned_cols=354 Identities=25% Similarity=0.414 Sum_probs=267.4
Q ss_pred HhhhhccccccccEEEEEEecChHHHhhcccCCCCCCCCCCCCcHHHHHHHhhchhhhhhhhcCCCccccccCCCCceee
Q 015211 15 LLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMS 94 (411)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
+.+....+...+++++|+||+++++|.+. +.....+..+++++++++|++........ ... ...+
T Consensus 13 ~~~~~~~~~~~~~~~~l~h~~~~~sp~~~----------~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~--~~~~ 77 (431)
T PLN03146 13 SELSAAEAPKGGFTVDLIHRDSPKSPFYN----------PSETPSQRLRNAFRRSISRVNHFRPTDAS---PND--PQSD 77 (431)
T ss_pred hhhhhccccCCceEEEEEeCCCCCCCCCC----------CCCChhHHHHHHHHHHHHHHHHHhhcccc---CCc--cccC
Confidence 33444455677899999999999998754 12223455666666666655443221110 000 0111
Q ss_pred ecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (411)
Q Consensus 95 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 173 (411)
+ ...+..|+++|.||||||++.|++||||+++||+|. |..|..+. ++.|||++|+||+.++|+++.|.
T Consensus 78 ~-~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~fdps~SST~~~~~C~s~~C~ 146 (431)
T PLN03146 78 L-ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLFDPKKSSTYKDVSCDSSQCQ 146 (431)
T ss_pred c-ccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcccCCCCCCCcccCCCCcccc
Confidence 1 123568999999999999999999999999999998 98887543 58899999999999999999998
Q ss_pred CCC---CCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecC
Q 015211 174 LGT---SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLG 250 (411)
Q Consensus 174 ~~~---~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg 250 (411)
... .|..+ +.|.|.+.|+|| +.+.|.+++|+|+|++..+.. ..++++.|||++.+.|.+.. ..+||||||
T Consensus 147 ~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~--~~~GilGLG 219 (431)
T PLN03146 147 ALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE--KGSGIVGLG 219 (431)
T ss_pred cCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--CCceeEecC
Confidence 642 37554 469999999997 677899999999998753221 24679999999988876532 469999999
Q ss_pred CCCCChHHHHHhcCCCcceeEEeecC-----CCCceEEEccCCCCC---ceEeeeeecCCCceeEEEeeeeeEeCCeeec
Q 015211 251 LGEISVPSLLAKAGLIRNSFSMCFDK-----DDSGRIFFGDQGPAT---QQSTSFLASNGKYITYIIGVETCCIGSSCLK 322 (411)
Q Consensus 251 ~~~~s~~~~l~~~~~i~~~FS~cL~~-----~~~G~l~fG~~d~~~---~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~ 322 (411)
++.+|+++||..+ +.++|||||.+ ...|.|+||+..... ..++|+++... +.+|+|+|++|+||++.+.
T Consensus 220 ~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~ 296 (431)
T PLN03146 220 GGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLP 296 (431)
T ss_pred CCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECc
Confidence 9999999998753 56799999964 136899999853221 34677765433 3799999999999999875
Q ss_pred cCc--------ccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEE
Q 015211 323 QTS--------FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSF 394 (411)
Q Consensus 323 ~~~--------~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~ 394 (411)
... ..+||||||++|+||+++|++|+++|.++++..+.......++.||+.... ..+|+|+||| +|+++
T Consensus 297 ~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~ 373 (431)
T PLN03146 297 YTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADV 373 (431)
T ss_pred CCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCee
Confidence 321 369999999999999999999999999999755443333457889985432 4789999999 58999
Q ss_pred EEeCCeEEEEecc
Q 015211 395 VVNNPVFVIYGTQ 407 (411)
Q Consensus 395 ~i~~~~yi~~~~~ 407 (411)
.|++++|+++.++
T Consensus 374 ~l~~~~~~~~~~~ 386 (431)
T PLN03146 374 KLQPLNTFVKVSE 386 (431)
T ss_pred ecCcceeEEEcCC
Confidence 9999999987643
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=405.92 Aligned_cols=294 Identities=30% Similarity=0.518 Sum_probs=237.4
Q ss_pred ecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CC-CCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCC
Q 015211 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CV-RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (411)
Q Consensus 95 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~-~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C 172 (411)
+..+.+.+||++|.||||||.|.|++||||+++||+|. |. .|..+. ++.|||++||||+.+.|+++.|
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c 108 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRC 108 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCccc
Confidence 44556679999999999999999999999999999997 88 676542 2459999999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCC-CCCceEEecCC
Q 015211 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDG-VAPDGLIGLGL 251 (411)
Q Consensus 173 ~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~-~~~dGIlGLg~ 251 (411)
.....|..+.+.|.|.+.|+|| ++++|.+++|+|+|++.+ ...++++.|||+..+.|. +.. .++|||||||+
T Consensus 109 ~~~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~ 181 (398)
T KOG1339|consen 109 KSLPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGR 181 (398)
T ss_pred cccccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccccccceEeecCC
Confidence 9976655555689999999995 589999999999999842 125678999999999886 333 57899999999
Q ss_pred CCCChHHHHHhcCCCcceeEEeecCC-----CCceEEEccCCCCC-ceEeeeeecCCCc-eeEEEeeeeeEeCCee----
Q 015211 252 GEISVPSLLAKAGLIRNSFSMCFDKD-----DSGRIFFGDQGPAT-QQSTSFLASNGKY-ITYIIGVETCCIGSSC---- 320 (411)
Q Consensus 252 ~~~s~~~~l~~~~~i~~~FS~cL~~~-----~~G~l~fG~~d~~~-~~~~p~v~~~~~~-~~y~v~l~~i~vgg~~---- 320 (411)
+.+++++|+.......++||+||.++ .+|.|+||+.|+.+ .+.+.|+|+.... .+|+|++++|+||++.
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGS 261 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCc
Confidence 99999999887766667999999876 37999999999987 4544455544432 3999999999999853
Q ss_pred --eccCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeC
Q 015211 321 --LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNN 398 (411)
Q Consensus 321 --~~~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~ 398 (411)
......++|+||||++++||+++|++|.++|...+.. .......+..||...... ..+|.|+|+|.+|+.|.+++
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 2222578999999999999999999999999877511 111223445677655432 35999999996699999999
Q ss_pred CeEEEEeccc
Q 015211 399 PVFVIYGTQV 408 (411)
Q Consensus 399 ~~yi~~~~~~ 408 (411)
++|+++.++.
T Consensus 339 ~~y~~~~~~~ 348 (398)
T KOG1339|consen 339 KNYLVEVSDG 348 (398)
T ss_pred cceEEEECCC
Confidence 9999987654
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.2e-48 Score=374.55 Aligned_cols=264 Identities=22% Similarity=0.385 Sum_probs=221.6
Q ss_pred eecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (411)
Q Consensus 94 ~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 173 (411)
||.|+.+..||++|.||||||++.|+|||||+++||+|. .|.... |..++.|||++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~--~C~~~~-------c~~~~~f~~~~Sst~~~~-------- 64 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV--YCSSQA-------CSNHNRFNPRQSSTYQST-------- 64 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC--CCCccc-------ccccCcCCCCCCcceeeC--------
Confidence 678999999999999999999999999999999999995 343222 335689999999999984
Q ss_pred CCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC
Q 015211 174 LGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE 253 (411)
Q Consensus 174 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 253 (411)
.|.|.+.|++| ++.|.+++|+|+|++. .++++.|||++...+.+......|||||||++.
T Consensus 65 ----------~~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 124 (317)
T cd05478 65 ----------GQPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPS 124 (317)
T ss_pred ----------CcEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccch
Confidence 38999999997 5799999999999875 577999999988877655444579999999875
Q ss_pred CC------hHHHHHhcCCC-cceeEEeecCCC--CceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeeecc
Q 015211 254 IS------VPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCLKQ 323 (411)
Q Consensus 254 ~s------~~~~l~~~~~i-~~~FS~cL~~~~--~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~~ 323 (411)
++ +..+|+++|+| +++||+||.++. +|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+|||+.+..
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-TYWQITVDSVTINGQVVAC 203 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-cEEEEEeeEEEECCEEEcc
Confidence 43 67789999999 699999998863 6899999999876 567888887654 8999999999999998853
Q ss_pred -CcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEE
Q 015211 324 -TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFV 402 (411)
Q Consensus 324 -~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi 402 (411)
....+||||||++++||+++|++|.+++... ... ..+|.++|+....+|+|+|+| +|++++|++++|+
T Consensus 204 ~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~ 272 (317)
T cd05478 204 SGGCQAIVDTGTSLLVGPSSDIANIQSDIGAS----QNQ------NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYI 272 (317)
T ss_pred CCCCEEEECCCchhhhCCHHHHHHHHHHhCCc----ccc------CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHhe
Confidence 4568999999999999999999988766332 111 124889998777899999999 7999999999999
Q ss_pred EEec
Q 015211 403 IYGT 406 (411)
Q Consensus 403 ~~~~ 406 (411)
++..
T Consensus 273 ~~~~ 276 (317)
T cd05478 273 LQDQ 276 (317)
T ss_pred ecCC
Confidence 8753
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.2e-47 Score=371.22 Aligned_cols=262 Identities=23% Similarity=0.355 Sum_probs=215.9
Q ss_pred CCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 015211 97 NDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLG 175 (411)
Q Consensus 97 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~ 175 (411)
|+.+.+||++|.||||||+|.|++||||+++||+|. |..|. ..|..++.|||++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~--------~~C~~~~~y~~~~SsT~~~~---------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD--------IACWLHHKYNSSKSSTYVKN---------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC--------ccccCcCcCCcccCcceeeC----------
Confidence 567889999999999999999999999999999995 55331 12445789999999999862
Q ss_pred CCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCC
Q 015211 176 TSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS 255 (411)
Q Consensus 176 ~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s 255 (411)
+|.|.+.|++| ++.|.+++|+|+|++. .++++.|||+..+.+..+.....|||||||++..+
T Consensus 63 --------~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 63 --------GTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred --------CcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 48999999998 5799999999999875 57789999999887644433467999999998765
Q ss_pred h------HHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeeec-
Q 015211 256 V------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCLK- 322 (411)
Q Consensus 256 ~------~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~- 322 (411)
. ..+|++||++ +++||+||.++ .+|.|+||++|+.+ .+.+.|+++... .+|.|++++|+||++...
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~ 203 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-AYWQIHMDQVDVGSGLTLC 203 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-eEEEEEeeEEEECCeeeec
Confidence 3 4679999999 69999999864 36999999999877 467888887654 799999999999987532
Q ss_pred cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEE
Q 015211 323 QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFV 402 (411)
Q Consensus 323 ~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi 402 (411)
.....+||||||+++++|+++|++|.+++.. ..... .+|.++|+....+|+|+|+| ||+.|+|+|++|+
T Consensus 204 ~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----~~~~~------~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~ 272 (325)
T cd05490 204 KGGCEAIVDTGTSLITGPVEEVRALQKAIGA----VPLIQ------GEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYI 272 (325)
T ss_pred CCCCEEEECCCCccccCCHHHHHHHHHHhCC----ccccC------CCEEecccccccCCCEEEEE-CCEEEEEChHHeE
Confidence 3467899999999999999999888876642 11111 13788998777899999999 7999999999999
Q ss_pred EEec
Q 015211 403 IYGT 406 (411)
Q Consensus 403 ~~~~ 406 (411)
++.+
T Consensus 273 ~~~~ 276 (325)
T cd05490 273 LKVS 276 (325)
T ss_pred Eecc
Confidence 9754
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.1e-46 Score=382.18 Aligned_cols=264 Identities=25% Similarity=0.343 Sum_probs=216.1
Q ss_pred CceeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCC
Q 015211 90 SKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSH 169 (411)
Q Consensus 90 ~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~ 169 (411)
...+++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|.... |..++.|||++||||+.+.+..
T Consensus 108 ~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~-------C~~~~~yd~s~SSTy~~~~~~~ 178 (482)
T PTZ00165 108 YLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGG-------CAPHRKFDPKKSSTYTKLKLGD 178 (482)
T ss_pred ccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCccc-------ccccCCCCccccCCcEecCCCC
Confidence 3578899999999999999999999999999999999999995 443322 3457899999999999853211
Q ss_pred CCCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEec
Q 015211 170 RLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 249 (411)
Q Consensus 170 ~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL 249 (411)
+...+.+.|++| +..|.+++|+|+|++. .++++.|||+..+.+..+...++||||||
T Consensus 179 -------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILGL 235 (482)
T PTZ00165 179 -------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVGL 235 (482)
T ss_pred -------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceeec
Confidence 112577999998 6789999999999875 67899999999887755555578999999
Q ss_pred CCCCC---------ChHHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCCc---eEeeeeecCCCceeEEEeeeee
Q 015211 250 GLGEI---------SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPATQ---QSTSFLASNGKYITYIIGVETC 314 (411)
Q Consensus 250 g~~~~---------s~~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~~---~~~p~v~~~~~~~~y~v~l~~i 314 (411)
|++.+ ++..+|++||++ +++||+||.++ .+|.|+||++|+.+. +.+.|+|+... .+|+|.+++|
T Consensus 236 g~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-~yW~i~l~~i 314 (482)
T PTZ00165 236 GFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-DYWEIEVVDI 314 (482)
T ss_pred CCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-ceEEEEeCeE
Confidence 99865 235679999999 69999999763 468999999998653 47889888765 8999999999
Q ss_pred EeCCeeec--cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCc
Q 015211 315 CIGSSCLK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNN 392 (411)
Q Consensus 315 ~vgg~~~~--~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~ 392 (411)
+||++.+. ...+.+|+||||+++++|+++|++|.+++. .. .+|+....+|+|+|+| +|.
T Consensus 315 ~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~----~~--------------~~C~~~~~lP~itf~f-~g~ 375 (482)
T PTZ00165 315 LIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIP----LE--------------EDCSNKDSLPRISFVL-EDV 375 (482)
T ss_pred EECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcC----Cc--------------ccccccccCCceEEEE-CCC
Confidence 99998664 357889999999999999999887776542 21 1466566899999999 443
Q ss_pred -----EEEEeCCeEEEEe
Q 015211 393 -----SFVVNNPVFVIYG 405 (411)
Q Consensus 393 -----~~~i~~~~yi~~~ 405 (411)
+|+|+|++|+++.
T Consensus 376 ~g~~v~~~l~p~dYi~~~ 393 (482)
T PTZ00165 376 NGRKIKFDMDPEDYVIEE 393 (482)
T ss_pred CCceEEEEEchHHeeeec
Confidence 8999999999974
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.9e-46 Score=364.80 Aligned_cols=266 Identities=24% Similarity=0.380 Sum_probs=221.4
Q ss_pred eecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCC
Q 015211 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLC 172 (411)
Q Consensus 94 ~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C 172 (411)
+|.|+.+.+|+++|.||||+|++.|++||||+++||+|. |..|. ..|..++.|||++|+|++..
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~--------~~c~~~~~y~~~~Sst~~~~------- 67 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN--------IACLLHNKYDSTKSSTYKKN------- 67 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC--------ccccCCCeECCcCCCCeEEC-------
Confidence 578999999999999999999999999999999999996 65332 12334678999999999974
Q ss_pred CCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCC
Q 015211 173 DLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (411)
Q Consensus 173 ~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~ 252 (411)
.|.|.+.|++| ++.|.+++|+|+|++. .++++.|||+..+.+..+.....+||||||++
T Consensus 68 -----------~~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (329)
T cd05485 68 -----------GTEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYS 126 (329)
T ss_pred -----------CeEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCc
Confidence 48999999997 5899999999999875 56789999998877643434467999999998
Q ss_pred CCCh------HHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCee
Q 015211 253 EISV------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSC 320 (411)
Q Consensus 253 ~~s~------~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~ 320 (411)
..+. ..+|++||+| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+|+++.
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~~~v~~~~i~v~~~~ 205 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-GYWQFKMDSVSVGEGE 205 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-eEEEEEeeEEEECCee
Confidence 7664 4679999999 69999999864 36999999999877 467777777654 8999999999999998
Q ss_pred eccCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCe
Q 015211 321 LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPV 400 (411)
Q Consensus 321 ~~~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~ 400 (411)
+......+||||||++++||+++|++|.+++.. .... ..||.++|+....+|+|+|+| ||+++.|++++
T Consensus 206 ~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~ 274 (329)
T cd05485 206 FCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGA----KPII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKD 274 (329)
T ss_pred ecCCCcEEEEccCCcceeCCHHHHHHHHHHhCC----cccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHH
Confidence 865667899999999999999998888766532 2111 135889998777899999999 89999999999
Q ss_pred EEEEecc
Q 015211 401 FVIYGTQ 407 (411)
Q Consensus 401 yi~~~~~ 407 (411)
|+++..+
T Consensus 275 yi~~~~~ 281 (329)
T cd05485 275 YVLKVTQ 281 (329)
T ss_pred eEEEecC
Confidence 9998653
No 7
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.6e-46 Score=364.77 Aligned_cols=264 Identities=25% Similarity=0.387 Sum_probs=219.5
Q ss_pred eecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (411)
Q Consensus 94 ~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 173 (411)
+|.|+.+.+||++|.||||+|++.|++||||+++||+|. .|.... |..++.|+|++|+|++.
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~-------C~~~~~y~~~~Sst~~~--------- 63 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIA-------CFLHSKYDSSASSTYKA--------- 63 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCcc-------cCCcceECCCCCcceee---------
Confidence 577888999999999999999999999999999999995 443322 22457899999999986
Q ss_pred CCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC
Q 015211 174 LGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE 253 (411)
Q Consensus 174 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 253 (411)
+.|.|.+.|++| ++.|.+++|+|+|++. .++++.|||+..+.|..+.....|||||||++.
T Consensus 64 ---------~~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~ 124 (320)
T cd05488 64 ---------NGTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDT 124 (320)
T ss_pred ---------CCCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCcc
Confidence 358999999997 5899999999999875 567999999988776544444679999999987
Q ss_pred CChH------HHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeeecc
Q 015211 254 ISVP------SLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCLKQ 323 (411)
Q Consensus 254 ~s~~------~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~~ 323 (411)
.+.+ .+|++||+| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-AYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-cEEEEEeCeEEECCEEecc
Confidence 6642 358899999 69999999874 57999999999876 467888887654 7999999999999998876
Q ss_pred CcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEE
Q 015211 324 TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVI 403 (411)
Q Consensus 324 ~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~ 403 (411)
....++|||||++++||++++++|.+.+ ++... ...+|.++|.....+|.|+|+| +|+++.|++++|++
T Consensus 204 ~~~~~ivDSGtt~~~lp~~~~~~l~~~~----~~~~~------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~ 272 (320)
T cd05488 204 ENTGAAIDTGTSLIALPSDLAEMLNAEI----GAKKS------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTL 272 (320)
T ss_pred CCCeEEEcCCcccccCCHHHHHHHHHHh----CCccc------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHhee
Confidence 6778999999999999999988876655 32211 1335889998777899999999 79999999999998
Q ss_pred Eec
Q 015211 404 YGT 406 (411)
Q Consensus 404 ~~~ 406 (411)
+.+
T Consensus 273 ~~~ 275 (320)
T cd05488 273 EVS 275 (320)
T ss_pred cCC
Confidence 643
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-45 Score=360.22 Aligned_cols=257 Identities=22% Similarity=0.369 Sum_probs=214.3
Q ss_pred CceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 015211 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (411)
Q Consensus 100 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~ 179 (411)
|..|+++|.||||||++.|++||||+++||+|. .|..+. |..++.|||++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~-------C~~~~~f~~~~SsT~~~~-------------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQA-------CTNHTKFNPSQSSTYSTN-------------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCcc-------ccccCCCCcccCCCceEC--------------
Confidence 468999999999999999999999999999995 444333 335689999999999873
Q ss_pred CCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC------
Q 015211 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------ 253 (411)
Q Consensus 180 ~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~------ 253 (411)
.|.|++.|++| ++.|.+++|+|+|++. .++++.|||+....+..+.....+||||||++.
T Consensus 58 ----~~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 58 ----GETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred ----CcEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 48999999998 5799999999999875 667999999998766433334579999999864
Q ss_pred CChHHHHHhcCCC-cceeEEeecCC---CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeeec--cCcc
Q 015211 254 ISVPSLLAKAGLI-RNSFSMCFDKD---DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCLK--QTSF 326 (411)
Q Consensus 254 ~s~~~~l~~~~~i-~~~FS~cL~~~---~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~--~~~~ 326 (411)
.+++.+|+++|.| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.+. ....
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~ 202 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-TYWQIGIQGFQINGQATGWCSQGC 202 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-eEEEEEeeEEEECCEEecccCCCc
Confidence 3567889999999 69999999874 46999999999877 467788887654 899999999999998764 3456
Q ss_pred cEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEEEe
Q 015211 327 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYG 405 (411)
Q Consensus 327 ~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~~~ 405 (411)
.+||||||++++||+++|++|++++..+.. . ..+|.++|+....+|+|+|+| +|++++|++++|+++.
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~ 270 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQD----Q------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN 270 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCccc----c------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC
Confidence 799999999999999999999887743321 1 125889998877899999999 7899999999999875
No 9
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.4e-45 Score=360.60 Aligned_cols=263 Identities=24% Similarity=0.384 Sum_probs=215.3
Q ss_pred ecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (411)
Q Consensus 95 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 173 (411)
|.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..|..++.|||++|+|++..
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~--------~~c~~~~~y~~~~SsT~~~~-------- 64 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY--------TACVTHNLYDASDSSTYKEN-------- 64 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc--------hhhcccCcCCCCCCeeeeEC--------
Confidence 35788999999999999999999999999999999995 65432 12445789999999999974
Q ss_pred CCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC
Q 015211 174 LGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE 253 (411)
Q Consensus 174 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 253 (411)
.|.|++.|++| ++.|.+++|+|+|++. .+ ++.|||+....+.-+.....|||||||++.
T Consensus 65 ----------~~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 123 (326)
T cd05487 65 ----------GTEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPK 123 (326)
T ss_pred ----------CEEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEEEEEEeccCCccceeecceEEecCChh
Confidence 49999999997 5899999999999875 33 578999987643222233579999999976
Q ss_pred CC------hHHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeee
Q 015211 254 IS------VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCL 321 (411)
Q Consensus 254 ~s------~~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~ 321 (411)
.+ +..+|++||+| +++||+||.++ ..|.|+||++|+.+ .+.+.|+++... .+|+|.+++|+||++.+
T Consensus 124 ~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~ 202 (326)
T cd05487 124 QAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-GFWQIQMKGVSVGSSTL 202 (326)
T ss_pred hcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-ceEEEEecEEEECCEEE
Confidence 54 35569999999 69999999864 36999999999987 567788887654 79999999999999987
Q ss_pred c-cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCe
Q 015211 322 K-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPV 400 (411)
Q Consensus 322 ~-~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~ 400 (411)
. .....+||||||++++||+++|+++++++.. ... . .+|.++|+....+|+|+|+| ||..++|++++
T Consensus 203 ~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~----~~~-~------~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~ 270 (326)
T cd05487 203 LCEDGCTAVVDTGASFISGPTSSISKLMEALGA----KER-L------GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSD 270 (326)
T ss_pred ecCCCCEEEECCCccchhCcHHHHHHHHHHhCC----ccc-C------CCEEEeccccCCCCCEEEEE-CCEEEEeCHHH
Confidence 5 3456899999999999999999888876632 211 1 23889998877899999999 79999999999
Q ss_pred EEEEecc
Q 015211 401 FVIYGTQ 407 (411)
Q Consensus 401 yi~~~~~ 407 (411)
|+++..+
T Consensus 271 yi~~~~~ 277 (326)
T cd05487 271 YVLQDSD 277 (326)
T ss_pred hEEeccC
Confidence 9998643
No 10
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.2e-45 Score=359.42 Aligned_cols=253 Identities=21% Similarity=0.349 Sum_probs=210.6
Q ss_pred EEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 015211 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPK 182 (411)
Q Consensus 103 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~~ 182 (411)
||++|.||||||++.|+|||||+++||+|. .|.... |..++.|||++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~-------C~~~~~y~~~~SsT~~~~----------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQA-------CTKHNRFQPSESSTYVSN----------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCcc-------cCccceECCCCCcccccC-----------------
Confidence 789999999999999999999999999995 443322 335688999999999874
Q ss_pred CCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCCh------
Q 015211 183 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV------ 256 (411)
Q Consensus 183 ~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~------ 256 (411)
+|.|.+.|++| ++.|.+++|+|+|++. .++++.|||+..+.+..+.....|||||||++.++.
T Consensus 55 -~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~ 123 (316)
T cd05486 55 -GEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPV 123 (316)
T ss_pred -CcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCH
Confidence 48999999998 6899999999999875 667999999988776544445679999999987653
Q ss_pred HHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeeec-cCcccEE
Q 015211 257 PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCLK-QTSFKAI 329 (411)
Q Consensus 257 ~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~-~~~~~~i 329 (411)
..+|++||+| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.+. .....+|
T Consensus 124 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-~~w~v~l~~i~v~g~~~~~~~~~~ai 202 (316)
T cd05486 124 FDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-GYWQIQLDNIQVGGTVIFCSDGCQAI 202 (316)
T ss_pred HHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-eEEEEEeeEEEEecceEecCCCCEEE
Confidence 6679999999 68999999864 36999999999876 567888887654 899999999999998764 3567899
Q ss_pred EecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEEEe
Q 015211 330 VDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYG 405 (411)
Q Consensus 330 iDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~~~ 405 (411)
|||||++++||+++|++|.+.+. +... . -+|.++|+....+|+|+|+| +|+.++|++++|++..
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~~----~~~~-~------~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~ 266 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYIG----ATAT-D------GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLED 266 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHhC----Cccc-C------CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEec
Confidence 99999999999999888766553 2211 1 23888998777899999999 7999999999999875
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.8e-45 Score=358.41 Aligned_cols=254 Identities=25% Similarity=0.362 Sum_probs=209.3
Q ss_pred eecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211 94 SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD 173 (411)
Q Consensus 94 ~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~ 173 (411)
++.|+.+.+|+++|.||||||+|.|++||||+++||+|. .|... ..|..++.|||++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~C~~~------~~C~~~~~y~~~~SsT~~~~-------- 65 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS--KCYFS------IACYFHSKYKSSKSSTYKKN-------- 65 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC--CCCCC------ccccccCcCCcccCCCcccC--------
Confidence 577899999999999999999999999999999999995 44311 11335689999999999874
Q ss_pred CCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC
Q 015211 174 LGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE 253 (411)
Q Consensus 174 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 253 (411)
.+.+.+.|++| ++.|.+++|+|+|++. .++++.|||+..+.+..+.....|||||||++.
T Consensus 66 ----------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~ 125 (317)
T cd06098 66 ----------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQE 125 (317)
T ss_pred ----------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceeccccccc
Confidence 37899999998 5799999999999875 677999999988765434445679999999986
Q ss_pred CCh------HHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCeee
Q 015211 254 ISV------PSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSCL 321 (411)
Q Consensus 254 ~s~------~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~ 321 (411)
.+. ..+|++||+| +++||+||.++ .+|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.+
T Consensus 126 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~ 204 (317)
T cd06098 126 ISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-GYWQFEMGDVLIGGKST 204 (317)
T ss_pred hhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-cEEEEEeCeEEECCEEe
Confidence 653 4569999999 68999999763 46999999999987 567888887654 79999999999999876
Q ss_pred c--cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCC
Q 015211 322 K--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNP 399 (411)
Q Consensus 322 ~--~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~ 399 (411)
. .....+||||||++++||+++++++. |.++|.....+|+|+|+| +|+.++|+++
T Consensus 205 ~~~~~~~~aivDTGTs~~~lP~~~~~~i~----------------------~~~~C~~~~~~P~i~f~f-~g~~~~l~~~ 261 (317)
T cd06098 205 GFCAGGCAAIADSGTSLLAGPTTIVTQIN----------------------SAVDCNSLSSMPNVSFTI-GGKTFELTPE 261 (317)
T ss_pred eecCCCcEEEEecCCcceeCCHHHHHhhh----------------------ccCCccccccCCcEEEEE-CCEEEEEChH
Confidence 4 34578999999999999999765442 235676556899999999 7999999999
Q ss_pred eEEEEecc
Q 015211 400 VFVIYGTQ 407 (411)
Q Consensus 400 ~yi~~~~~ 407 (411)
+|+++.++
T Consensus 262 ~yi~~~~~ 269 (317)
T cd06098 262 QYILKVGE 269 (317)
T ss_pred HeEEeecC
Confidence 99987543
No 12
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-44 Score=353.58 Aligned_cols=260 Identities=24% Similarity=0.427 Sum_probs=210.7
Q ss_pred ceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 015211 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (411)
Q Consensus 101 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~ 179 (411)
..||++|.||||+|++.|+|||||+++||+|. |..|..+ .++.|||++|+|++.+.|++..|.....|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~----------~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIH----------MEPPYNLNNSITSSILYCDCNKCCYCLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCC----------CCCCcCcccccccccccCCCccccccCcCC
Confidence 37999999999999999999999999999997 8888643 247899999999999999999997655564
Q ss_pred CCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCC-h--
Q 015211 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS-V-- 256 (411)
Q Consensus 180 ~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s-~-- 256 (411)
+ +.|.|.+.|++| +.+.|.+++|+|+|++..... .+....++.|||+..+.+.+.. ...|||||||+...+ +
T Consensus 72 ~--~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 N--NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLT-QQATGILGLSLTKNNGLPT 146 (326)
T ss_pred C--CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcccc-cccceEEEccCCcccccCc
Confidence 4 469999999996 678999999999998752210 0012246899999988776543 356999999998753 2
Q ss_pred HH-HHHhcCCC-c--ceeEEeecCCCCceEEEccCCCCCc-----------eEeeeeecCCCceeEEEeeeeeEeCCee-
Q 015211 257 PS-LLAKAGLI-R--NSFSMCFDKDDSGRIFFGDQGPATQ-----------QSTSFLASNGKYITYIIGVETCCIGSSC- 320 (411)
Q Consensus 257 ~~-~l~~~~~i-~--~~FS~cL~~~~~G~l~fG~~d~~~~-----------~~~p~v~~~~~~~~y~v~l~~i~vgg~~- 320 (411)
+. +|.+++.+ . ++||+||+++ .|.|+||++|+.+. +.+.|+|+... .+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-~~y~v~l~~i~vg~~~~ 224 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-YYYYVKLEGLSVYGTTS 224 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC-ceEEEEEEEEEEccccc
Confidence 22 35555554 3 8999999974 79999999998753 46778887655 7999999999999985
Q ss_pred --eccCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeC
Q 015211 321 --LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNN 398 (411)
Q Consensus 321 --~~~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~ 398 (411)
.......+||||||++++||+++|++|.+++ |+|+|+|++|++++++|
T Consensus 225 ~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p 274 (326)
T cd06096 225 NSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKP 274 (326)
T ss_pred ceecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECH
Confidence 2335778999999999999999999987655 89999996689999999
Q ss_pred CeEEEEecc
Q 015211 399 PVFVIYGTQ 407 (411)
Q Consensus 399 ~~yi~~~~~ 407 (411)
++|+++.++
T Consensus 275 ~~y~~~~~~ 283 (326)
T cd06096 275 SSYLYKKES 283 (326)
T ss_pred HHhccccCC
Confidence 999987644
No 13
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-43 Score=342.59 Aligned_cols=239 Identities=28% Similarity=0.460 Sum_probs=196.0
Q ss_pred eEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 015211 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (411)
Q Consensus 102 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 181 (411)
+|+++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 5899999999999999999999999999982 22
Q ss_pred CCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCChHHHHH
Q 015211 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLA 261 (411)
Q Consensus 182 ~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~~l~ 261 (411)
|.|.+.|++| +.++|.+++|+|+|++. ..++++.|||+..+.+.+. ..+||||||+..++++.||.
T Consensus 34 ---~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~ 99 (299)
T cd05472 34 ---CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTA 99 (299)
T ss_pred ---CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhh
Confidence 5799999997 56789999999999864 1467899999998876542 57999999999999999987
Q ss_pred hcCCCcceeEEeecC---CCCceEEEccCCCCCceEeeeeecCC---CceeEEEeeeeeEeCCeeecc-----CcccEEE
Q 015211 262 KAGLIRNSFSMCFDK---DDSGRIFFGDQGPATQQSTSFLASNG---KYITYIIGVETCCIGSSCLKQ-----TSFKAIV 330 (411)
Q Consensus 262 ~~~~i~~~FS~cL~~---~~~G~l~fG~~d~~~~~~~p~v~~~~---~~~~y~v~l~~i~vgg~~~~~-----~~~~~ii 330 (411)
.+ .+++||+||.+ ..+|.|+||++|+. .+.+.|+|+.. ...+|.|+|++|+||++.+.. ....+||
T Consensus 100 ~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iv 176 (299)
T cd05472 100 SS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVII 176 (299)
T ss_pred Hh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEE
Confidence 64 56899999986 34799999999987 44444444332 236899999999999998753 2457999
Q ss_pred ecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEEE
Q 015211 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 404 (411)
Q Consensus 331 DSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~~ 404 (411)
||||++++||+++|++|.+++.+++...........++.||..++.....+|+|+|+|++|+.++|++++|+++
T Consensus 177 DSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~ 250 (299)
T cd05472 177 DSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYP 250 (299)
T ss_pred eCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEE
Confidence 99999999999999999999988764332222223456799988866678999999996689999999999984
No 14
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-43 Score=349.35 Aligned_cols=272 Identities=21% Similarity=0.315 Sum_probs=209.6
Q ss_pred eCCCCeE-EEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCC--C---------
Q 015211 109 IGTPNVS-FLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLG--T--------- 176 (411)
Q Consensus 109 iGtP~q~-~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~--~--------- 176 (411)
+|||-.+ |.|++||||+++||+|. |.+|+||+.++|+++.|... .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~ 58 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGA 58 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCC
Confidence 6888777 99999999999999992 34688999999999999853 1
Q ss_pred ---CCCCCCCCCceeee-eCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCC
Q 015211 177 ---SCQNPKQPCPYTMD-YYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLG 252 (411)
Q Consensus 177 ---~C~~~~~~c~~~~~-Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~ 252 (411)
.|.+ +.|.|... |++| +.+.|++++|+|+|+..++.......++++.|||+..+....+. ...|||||||++
T Consensus 59 ~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~ 134 (362)
T cd05489 59 PGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRS 134 (362)
T ss_pred CCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCC
Confidence 3433 34888665 7786 78899999999999865432110125679999999886432221 246999999999
Q ss_pred CCChHHHHHhcCCCcceeEEeecCC--CCceEEEccCCCCC----------ceEeeeeecCCCceeEEEeeeeeEeCCee
Q 015211 253 EISVPSLLAKAGLIRNSFSMCFDKD--DSGRIFFGDQGPAT----------QQSTSFLASNGKYITYIIGVETCCIGSSC 320 (411)
Q Consensus 253 ~~s~~~~l~~~~~i~~~FS~cL~~~--~~G~l~fG~~d~~~----------~~~~p~v~~~~~~~~y~v~l~~i~vgg~~ 320 (411)
.+|+++||..++..+++|||||+++ .+|.|+||+.+..+ ..++|++..+....+|+|+|++|+||++.
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~ 214 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHA 214 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEE
Confidence 9999999987766679999999874 47999999988532 34666654432347999999999999998
Q ss_pred ecc----------CcccEEEecCCcccccCHHHHHHHHHHHHHhccccccccc-CCCccceEeecC----CCCCCCCeEE
Q 015211 321 LKQ----------TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFE-GYPWKCCYKSSS----QRLPKLPSVK 385 (411)
Q Consensus 321 ~~~----------~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~-~~~~~~Cy~~~~----~~~~~~P~i~ 385 (411)
+.. ....+||||||++|+||+++|++|.++|.++++....... ...++.||.... .....+|+|+
T Consensus 215 l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it 294 (362)
T cd05489 215 VPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAID 294 (362)
T ss_pred CCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEE
Confidence 752 1347999999999999999999999999988865433222 122479998542 2246899999
Q ss_pred EEeCC-CcEEEEeCCeEEEEecc
Q 015211 386 LMFPQ-NNSFVVNNPVFVIYGTQ 407 (411)
Q Consensus 386 f~f~g-g~~~~i~~~~yi~~~~~ 407 (411)
|||+| |++|+|++++|+++.++
T Consensus 295 ~~f~g~g~~~~l~~~ny~~~~~~ 317 (362)
T cd05489 295 LVLDGGGVNWTIFGANSMVQVKG 317 (362)
T ss_pred EEEeCCCeEEEEcCCceEEEcCC
Confidence 99976 79999999999998653
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.5e-43 Score=355.06 Aligned_cols=264 Identities=19% Similarity=0.311 Sum_probs=211.9
Q ss_pred CCceeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCC
Q 015211 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCS 168 (411)
Q Consensus 89 ~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~ 168 (411)
.+..+++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|.... |..++.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~--~C~~~~-------C~~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI--KCTTEG-------CETKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec--CCCccc-------ccCCCccCCccCcceEEC---
Confidence 34578888999999999999999999999999999999999995 443222 335689999999999874
Q ss_pred CCCCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCC--CCCCCCCceE
Q 015211 169 HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGG--YLDGVAPDGL 246 (411)
Q Consensus 169 ~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~--~~~~~~~dGI 246 (411)
++.|.+.|++| ++.|.+++|+|+|++. .++ ..|+|+....+. .......|||
T Consensus 194 ---------------~~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DGI 247 (453)
T PTZ00147 194 ---------------GTKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDGI 247 (453)
T ss_pred ---------------CCEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccce
Confidence 48999999998 5899999999999875 444 579998876552 2233467999
Q ss_pred EecCCCCCCh------HHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEe
Q 015211 247 IGLGLGEISV------PSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCI 316 (411)
Q Consensus 247 lGLg~~~~s~------~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~v 316 (411)
||||++.++. +.+|++||+| +++||+||+++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.++ +.+
T Consensus 248 LGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-~~W~V~l~-~~v 325 (453)
T PTZ00147 248 FGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-LYWQVDLD-VHF 325 (453)
T ss_pred ecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-ceEEEEEE-EEE
Confidence 9999987653 5679999999 68999999863 47999999999987 567888887654 79999998 578
Q ss_pred CCeeeccCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEE
Q 015211 317 GSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVV 396 (411)
Q Consensus 317 gg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i 396 (411)
|+... ....+||||||+++++|+++++++.+++.. ...... + .|..+|+. ..+|+|+|+| +|..++|
T Consensus 326 g~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~~----~~~~~~--~---~y~~~C~~-~~lP~~~f~f-~g~~~~L 392 (453)
T PTZ00147 326 GNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLDV----FKVPFL--P---LYVTTCNN-TKLPTLEFRS-PNKVYTL 392 (453)
T ss_pred CCEec--CceeEEECCCCchhcCCHHHHHHHHHHhCC----eecCCC--C---eEEEeCCC-CCCCeEEEEE-CCEEEEE
Confidence 77543 467899999999999999998888776632 111111 1 16678875 4789999999 6899999
Q ss_pred eCCeEEEEe
Q 015211 397 NNPVFVIYG 405 (411)
Q Consensus 397 ~~~~yi~~~ 405 (411)
+|++|+++.
T Consensus 393 ~p~~yi~~~ 401 (453)
T PTZ00147 393 EPEYYLQPI 401 (453)
T ss_pred CHHHheecc
Confidence 999999764
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.6e-41 Score=341.24 Aligned_cols=263 Identities=17% Similarity=0.306 Sum_probs=209.2
Q ss_pred CCceeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCC
Q 015211 89 GSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCS 168 (411)
Q Consensus 89 ~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~ 168 (411)
.+..+++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|.... |..++.|||++|+|++..
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~--~C~~~~-------C~~~~~yd~s~SsT~~~~--- 192 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCDSIG-------CSIKNLYDSSKSKSYEKD--- 192 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc--cCCccc-------cccCCCccCccCcccccC---
Confidence 34567788999999999999999999999999999999999995 343222 335688999999999874
Q ss_pred CCCCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccC--CCCCCCCCceE
Q 015211 169 HRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSG--GYLDGVAPDGL 246 (411)
Q Consensus 169 ~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g--~~~~~~~~dGI 246 (411)
+|.+.+.|++| ++.|.+++|+|+|++. ..+ ..|+++....+ ..+....+|||
T Consensus 193 ---------------~~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~~-~~f~~~~~~~~~~~~~~~~~~dGI 246 (450)
T PTZ00013 193 ---------------GTKVDITYGSG--TVKGFFSKDLVTLGHL--------SMP-YKFIEVTDTDDLEPIYSSSEFDGI 246 (450)
T ss_pred ---------------CcEEEEEECCc--eEEEEEEEEEEEECCE--------EEc-cEEEEEEeccccccceecccccce
Confidence 48999999997 5899999999999875 343 57888876532 22333467999
Q ss_pred EecCCCCCC------hHHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEe
Q 015211 247 IGLGLGEIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCI 316 (411)
Q Consensus 247 lGLg~~~~s------~~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~v 316 (411)
||||++.++ ++.+|++||+| +++||+||+++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.++ +.+
T Consensus 247 lGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-~yW~I~l~-v~~ 324 (450)
T PTZ00013 247 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-LYWQIDLD-VHF 324 (450)
T ss_pred ecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-ceEEEEEE-EEE
Confidence 999998765 46679999999 68999999864 47999999999987 568888888654 79999998 777
Q ss_pred CCeeeccCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEE
Q 015211 317 GSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVV 396 (411)
Q Consensus 317 gg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i 396 (411)
|.... ....+||||||+++++|+++++++.+.+. ....... ..|..+|+. ..+|+|+|+| +|.+++|
T Consensus 325 G~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l~----~~~~~~~-----~~y~~~C~~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 325 GKQTM--QKANVIVDSGTTTITAPSEFLNKFFANLN----VIKVPFL-----PFYVTTCDN-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred Cceec--cccceEECCCCccccCCHHHHHHHHHHhC----CeecCCC-----CeEEeecCC-CCCCeEEEEE-CCEEEEE
Confidence 75544 35789999999999999999877776553 2211111 126778865 4789999999 7899999
Q ss_pred eCCeEEEE
Q 015211 397 NNPVFVIY 404 (411)
Q Consensus 397 ~~~~yi~~ 404 (411)
+|++|+.+
T Consensus 392 ~p~~Yi~~ 399 (450)
T PTZ00013 392 EPEYYMNP 399 (450)
T ss_pred CHHHheeh
Confidence 99999875
No 17
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.7e-41 Score=324.47 Aligned_cols=239 Identities=21% Similarity=0.293 Sum_probs=194.8
Q ss_pred EEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 015211 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (411)
Q Consensus 103 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 181 (411)
|+++|.||||||++.|++||||+++||+|. |..|... .+..|||++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~----------~~~~y~~~~Sst~~~~~--------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG----------GHKLYDPSKSSTAKLLP--------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc----------cCCcCCCccCccceecC---------------
Confidence 789999999999999999999999999997 7776432 35779999999998753
Q ss_pred CCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCC------
Q 015211 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------ 255 (411)
Q Consensus 182 ~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s------ 255 (411)
.|.|.+.|++| +.+.|.+++|+|+|++. .++++.|||+....+.++.....|||||||++..+
T Consensus 56 --~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 --GATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred --CcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 58999999997 56899999999999875 67799999999877655554578999999998654
Q ss_pred ---hHHHHHhcCCCcceeEEeecCCCCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCee-eccCcccEEE
Q 015211 256 ---VPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSC-LKQTSFKAIV 330 (411)
Q Consensus 256 ---~~~~l~~~~~i~~~FS~cL~~~~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~-~~~~~~~~ii 330 (411)
+..+|.+++. +++||+||.+...|.|+||++|+.+ .+.+.|+|+.....+|.|++++|+||++. .......+||
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ii 203 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIA 203 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEe
Confidence 3445777754 7999999998778999999999876 56788888765347999999999999983 3346788999
Q ss_pred ecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEe
Q 015211 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMF 388 (411)
Q Consensus 331 DSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f 388 (411)
||||+++++|+++++++.+++. +.... . ...+|.++|+.. +|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~---g~~~~-~----~~~~~~~~C~~~--~P~i~f~~ 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVP---GAYYD-S----EYGGWVFPCDTT--LPDLSFAV 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCc---CCccc-C----CCCEEEEECCCC--CCCEEEEE
Confidence 9999999999999877776553 11111 1 123589999853 89999999
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-41 Score=337.57 Aligned_cols=265 Identities=19% Similarity=0.205 Sum_probs=198.2
Q ss_pred ceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 015211 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (411)
Q Consensus 101 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 180 (411)
..||++|.||||+|+|.|+|||||+++||+|. .|.. .++.|||++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~-----------~~~~f~~~~SsT~~~~--------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF-----------IHTYFHRELSSTYRDL--------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc-----------ccccCCchhCcCcccC---------------
Confidence 47999999999999999999999999999995 2311 2478999999999985
Q ss_pred CCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCC-----
Q 015211 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----- 255 (411)
Q Consensus 181 ~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s----- 255 (411)
+|.|++.|++| ++.|.+++|+|+|++... ....+.|++.....+.+......|||||||++.++
T Consensus 54 ---~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 54 ---GKGVTVPYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---CceEEEEECcc--eEEEEEEEEEEEECCCCc------cceEEeeEEEeccccceecccccceeeeecccccccCCCC
Confidence 48999999998 679999999999985311 22234566766555544443467999999998764
Q ss_pred ---hHHHHHhcCCCcceeEEeecC-----------CCCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCee
Q 015211 256 ---VPSLLAKAGLIRNSFSMCFDK-----------DDSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSC 320 (411)
Q Consensus 256 ---~~~~l~~~~~i~~~FS~cL~~-----------~~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~ 320 (411)
+..+|.+|+.++++||++|.. ...|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-WYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-eeEEEEEEEEEECCEe
Confidence 345788888888899998742 136999999999876 456667776554 7999999999999998
Q ss_pred eccC-----cccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccC--CCccceEeecCCCCCCCCeEEEEeCCC--
Q 015211 321 LKQT-----SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEG--YPWKCCYKSSSQRLPKLPSVKLMFPQN-- 391 (411)
Q Consensus 321 ~~~~-----~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~--~~~~~Cy~~~~~~~~~~P~i~f~f~gg-- 391 (411)
+... ...+||||||++++||+++|++|.+++.++.......... .....|+.........+|+|+|+|+|+
T Consensus 202 ~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~ 281 (364)
T cd05473 202 LNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENS 281 (364)
T ss_pred cccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCC
Confidence 7521 2369999999999999999999999998775322111110 001235443322223689999999653
Q ss_pred ---cEEEEeCCeEEEEe
Q 015211 392 ---NSFVVNNPVFVIYG 405 (411)
Q Consensus 392 ---~~~~i~~~~yi~~~ 405 (411)
.+++|+|++|+++.
T Consensus 282 ~~~~~l~l~p~~Y~~~~ 298 (364)
T cd05473 282 SQSFRITILPQLYLRPV 298 (364)
T ss_pred CceEEEEECHHHhhhhh
Confidence 36899999998764
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1e-40 Score=318.28 Aligned_cols=216 Identities=30% Similarity=0.621 Sum_probs=177.8
Q ss_pred eEEEEEEeCCCCeEEEEEEEcCCCceEEecC--CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 015211 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD--CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 179 (411)
Q Consensus 102 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~--C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~ 179 (411)
.||++|.||||||++.|++||||+++||+|+ |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 6899999999999999999999999999983 4333
Q ss_pred CCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCC-CCCCCceEEecCCCCCChHH
Q 015211 180 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYL-DGVAPDGLIGLGLGEISVPS 258 (411)
Q Consensus 180 ~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~-~~~~~dGIlGLg~~~~s~~~ 258 (411)
.|.|.+.|+|| +.+.|.+++|+|+|+..++. ...+++.|||+..+.+.+. .....|||||||+...++++
T Consensus 39 ----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 28999999985 58899999999999764332 2457899999988766432 33467999999999999999
Q ss_pred HHHhcCCCcceeEEeecCCCCceEEEccCCCCCceEeeeeecCCC--ceeEEEeeeeeEeCCeeeccCcccEEEecCCcc
Q 015211 259 LLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGK--YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSF 336 (411)
Q Consensus 259 ~l~~~~~i~~~FS~cL~~~~~G~l~fG~~d~~~~~~~p~v~~~~~--~~~y~v~l~~i~vgg~~~~~~~~~~iiDSGTs~ 336 (411)
||+++++|+++||+||+++.+|.|+||+... +.+.+.|+|+... ..+|.|++++|+||++.+......+||||||++
T Consensus 110 ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~ 188 (273)
T cd05475 110 QLASQGIIKNVIGHCLSSNGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSY 188 (273)
T ss_pred HHHhcCCcCceEEEEccCCCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCce
Confidence 9999998999999999987779999995432 2334555554432 379999999999999976656678999999999
Q ss_pred cccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCC---cEEEEeCCeEEEEec
Q 015211 337 TFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQN---NSFVVNNPVFVIYGT 406 (411)
Q Consensus 337 t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg---~~~~i~~~~yi~~~~ 406 (411)
++||+++| +|+|+|+|.++ ++++|++++|+++..
T Consensus 189 t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 189 TYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 99999976 58999999544 799999999998753
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.6e-38 Score=303.63 Aligned_cols=240 Identities=28% Similarity=0.492 Sum_probs=197.6
Q ss_pred EEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 015211 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (411)
Q Consensus 103 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 181 (411)
|+++|.||||+|++.|++||||+++||+|. |..|....+. ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~--------~~~~~~~~s~~~~~----------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP--------RFKYDSSKSSTYKD----------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC--------CCccCccCCceeec-----------------
Confidence 788999999999999999999999999997 7776543321 11377777777665
Q ss_pred CCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC------CC
Q 015211 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------IS 255 (411)
Q Consensus 182 ~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~------~s 255 (411)
..|.|.+.|++| .+.|.+++|+|+|++. .++++.|||+....+.+ .....+||||||+.. .+
T Consensus 56 -~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 -TGCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCCEEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCcc-cccccceEeecCCcccccccCCC
Confidence 359999999997 7899999999999986 57799999999887632 234679999999998 78
Q ss_pred hHHHHHhcCCC-cceeEEeecCC----CCceEEEccCCCCC-ceEeeeeecCCC-ceeEEEeeeeeEeCCe--eeccCcc
Q 015211 256 VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT-QQSTSFLASNGK-YITYIIGVETCCIGSS--CLKQTSF 326 (411)
Q Consensus 256 ~~~~l~~~~~i-~~~FS~cL~~~----~~G~l~fG~~d~~~-~~~~p~v~~~~~-~~~y~v~l~~i~vgg~--~~~~~~~ 326 (411)
++.+|.++++| +++||+||.+. ..|.|+||++|+.+ .+.+.|+|+... ..+|.|.+++|.|+++ .......
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 203 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGG 203 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCc
Confidence 99999999998 79999999874 68999999999875 455566665543 4799999999999997 4444677
Q ss_pred cEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEe
Q 015211 327 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMF 388 (411)
Q Consensus 327 ~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f 388 (411)
.++|||||++++||+++|++|.+++...... ...|+...|.....+|+|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE
Confidence 8999999999999999999998888765432 3456778887778999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2e-39 Score=315.24 Aligned_cols=257 Identities=25% Similarity=0.461 Sum_probs=213.9
Q ss_pred eEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 015211 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (411)
Q Consensus 102 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 180 (411)
.|+++|.||||+|++.|++||||+++||++. |..|. .|.....|+|.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~---------~~~~~~~y~~~~S~t~~~~~-------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS---------SCASSGFYNPSKSSTFSNQG-------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT---------HHCTSC-BBGGGSTTEEEEE--------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc---------ccccccccccccccccccce--------------
Confidence 5999999999999999999999999999996 66651 12345789999999999854
Q ss_pred CCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCC-------
Q 015211 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------- 253 (411)
Q Consensus 181 ~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~------- 253 (411)
+.+.+.|++| .++|.+++|+|+|++. ...++.||++....+..+.....|||||||++.
T Consensus 58 ----~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ----KPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ----EEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred ----eeeeeeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 7899999997 4999999999999886 667899999999765433334679999999753
Q ss_pred CChHHHHHhcCCC-cceeEEeecCCC--CceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCe-eeccCcccE
Q 015211 254 ISVPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSS-CLKQTSFKA 328 (411)
Q Consensus 254 ~s~~~~l~~~~~i-~~~FS~cL~~~~--~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~-~~~~~~~~~ 328 (411)
.+++.+|+++|+| +++||++|.+.. .|.|+||++|+.+ .+.+.|+++.. ..+|.|.+++|.++++ ........+
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~-~~~w~v~~~~i~i~~~~~~~~~~~~~ 202 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS-SGYWSVPLDSISIGGESVFSSSGQQA 202 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS-TTTTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCccc-ccccccccccccccccccccccceee
Confidence 3567789999999 699999998864 7999999999987 56788888774 4899999999999999 444456789
Q ss_pred EEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEEEeccc
Q 015211 329 IVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQV 408 (411)
Q Consensus 329 iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~~~~~~ 408 (411)
+|||||++++||++++++|++.+...... .+|.++|+....+|.|+|+| ++.+++|++++|+++..+.
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESST
T ss_pred ecccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhccccccc
Confidence 99999999999999988888777544322 34899998877899999999 7999999999999987654
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.6e-38 Score=298.75 Aligned_cols=204 Identities=28% Similarity=0.516 Sum_probs=172.6
Q ss_pred eEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 015211 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 181 (411)
Q Consensus 102 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~~ 181 (411)
+|+++|.||||||++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 489999999999999999999999999987
Q ss_pred CCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCChHHHHH
Q 015211 182 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLA 261 (411)
Q Consensus 182 ~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~~l~ 261 (411)
|.|.+.|+|| +.+.|.+++|+|+|++.. ..++++.|||+..+.+ + .....+||||||+...|++.||.
T Consensus 31 ---~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~ 98 (265)
T cd05476 31 ---CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLG 98 (265)
T ss_pred ---CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhh
Confidence 6789999985 689999999999999751 1467899999998876 2 33467999999999999999998
Q ss_pred hcCCCcceeEEeecC----CCCceEEEccCCCCCceEeeeeecCC---CceeEEEeeeeeEeCCeeec----------cC
Q 015211 262 KAGLIRNSFSMCFDK----DDSGRIFFGDQGPATQQSTSFLASNG---KYITYIIGVETCCIGSSCLK----------QT 324 (411)
Q Consensus 262 ~~~~i~~~FS~cL~~----~~~G~l~fG~~d~~~~~~~p~v~~~~---~~~~y~v~l~~i~vgg~~~~----------~~ 324 (411)
.++ ++||+||.+ +..|+|+||++|+.+.+.+.|+|+.. ...+|.|++++|+|+++.+. ..
T Consensus 99 ~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 175 (265)
T cd05476 99 STG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175 (265)
T ss_pred ccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC
Confidence 877 899999986 34799999999987534444444432 24799999999999999764 24
Q ss_pred cccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCCeEEEE
Q 015211 325 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 404 (411)
Q Consensus 325 ~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~~yi~~ 404 (411)
...+||||||++++||+++| |+|+|+|++|+++.+++++|+++
T Consensus 176 ~~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 56799999999999999986 89999996699999999999986
Q ss_pred ecc
Q 015211 405 GTQ 407 (411)
Q Consensus 405 ~~~ 407 (411)
..+
T Consensus 219 ~~~ 221 (265)
T cd05476 219 VGE 221 (265)
T ss_pred CCC
Confidence 543
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.5e-37 Score=299.56 Aligned_cols=224 Identities=23% Similarity=0.383 Sum_probs=186.9
Q ss_pred ceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 015211 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (411)
Q Consensus 101 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 180 (411)
+.|+++|.||||+|++.|++||||+++||+
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------- 30 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------- 30 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------
Confidence 368999999999999999999999999995
Q ss_pred CCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCC------
Q 015211 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI------ 254 (411)
Q Consensus 181 ~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~------ 254 (411)
.|++.|++| +.+.|.+++|+|+|++. .++++.|||++... ..+||||||+...
T Consensus 31 -----~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 -----DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred -----eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccC
Confidence 367889995 58999999999999875 56789999998732 4599999999876
Q ss_pred -----ChHHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCC-----ceeEEEeeeeeEeCCee
Q 015211 255 -----SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGK-----YITYIIGVETCCIGSSC 320 (411)
Q Consensus 255 -----s~~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~-----~~~y~v~l~~i~vgg~~ 320 (411)
+++.+|.++|+| +++||+||.+. ..|.|+||++|+.+ .+.+.|+|+... ..+|.|.+++|+|+++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 678999999999 69999999874 57999999999876 455666665443 26899999999999987
Q ss_pred ec----cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEE
Q 015211 321 LK----QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVV 396 (411)
Q Consensus 321 ~~----~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i 396 (411)
+. .....+||||||++++||+++|++|.+++....... ..+|..+|..... |+|+|+| +|++++|
T Consensus 170 ~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---------~~~~~~~C~~~~~-p~i~f~f-~g~~~~i 238 (295)
T cd05474 170 GNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---------EGLYVVDCDAKDD-GSLTFNF-GGATISV 238 (295)
T ss_pred CcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---------CcEEEEeCCCCCC-CEEEEEE-CCeEEEE
Confidence 53 356789999999999999999999988876543211 1247788976656 9999999 6899999
Q ss_pred eCCeEEEEec
Q 015211 397 NNPVFVIYGT 406 (411)
Q Consensus 397 ~~~~yi~~~~ 406 (411)
++++|+++..
T Consensus 239 ~~~~~~~~~~ 248 (295)
T cd05474 239 PLSDLVLPAS 248 (295)
T ss_pred EHHHhEeccc
Confidence 9999998864
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.98 E-value=4.2e-32 Score=238.98 Aligned_cols=157 Identities=38% Similarity=0.713 Sum_probs=127.3
Q ss_pred EEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCC----CC
Q 015211 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGT----SC 178 (411)
Q Consensus 103 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~----~C 178 (411)
||++|.||||+|++.|++||||+++|++| ..+.|+|.+|+||+.++|+++.|.... .|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------------------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~ 62 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------------------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCC 62 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCC
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------------------CCcccCCccCCcccccCCCCcchhhcccccccC
Confidence 89999999999999999999999999998 248899999999999999999998642 44
Q ss_pred CCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCCCCCChHH
Q 015211 179 QNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPS 258 (411)
Q Consensus 179 ~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~ 258 (411)
......|.|.+.|+++ +.+.|.+++|+|+++...+.. ....++.|||+..+.|.+. ..+||||||+.++|+++
T Consensus 63 ~~~~~~C~y~~~y~~~-s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~s 135 (164)
T PF14543_consen 63 CCSNNSCPYSQSYGDG-SSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPS 135 (164)
T ss_dssp TCESSEEEEEEEETTT-EEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHH
T ss_pred CCCcCcccceeecCCC-ccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHH
Confidence 4445679999999995 899999999999999864332 3567999999999987654 56999999999999999
Q ss_pred HHHhcCCCcceeEEeecC---CCCceEEEcc
Q 015211 259 LLAKAGLIRNSFSMCFDK---DDSGRIFFGD 286 (411)
Q Consensus 259 ~l~~~~~i~~~FS~cL~~---~~~G~l~fG~ 286 (411)
||+++ ..++|||||.+ +..|.|+||+
T Consensus 136 Ql~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 136 QLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 99887 77999999988 3679999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=3.4e-23 Score=169.75 Aligned_cols=107 Identities=36% Similarity=0.537 Sum_probs=90.4
Q ss_pred EEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 015211 105 TWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY-SPSASSTSKHLSCSHRLCDLGTSCQNPK 182 (411)
Q Consensus 105 ~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f-~p~~SsT~~~~~C~~~~C~~~~~C~~~~ 182 (411)
++|.||||||++.|+|||||+++||+|. |..|.... ++.| +|+.|++++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~~----------------- 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSDN----------------- 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCCC-----------------
Confidence 3689999999999999999999999997 76665332 3455 99999999874
Q ss_pred CCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEec
Q 015211 183 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 249 (411)
Q Consensus 183 ~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL 249 (411)
.|.|.+.|++| .+.|.+++|+|+|++. ..+++.|||+....+.++.....+|||||
T Consensus 54 -~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 -GCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -CcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 49999999997 5789999999999875 57799999999998875555577999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.64 E-value=4.5e-16 Score=136.69 Aligned_cols=102 Identities=23% Similarity=0.425 Sum_probs=79.2
Q ss_pred eEEEeeeeeEeCCeeecc--C-------cccEEEecCCcccccCHHHHHHHHHHHHHhcccccc---cccCCCccceEee
Q 015211 306 TYIIGVETCCIGSSCLKQ--T-------SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTIT---SFEGYPWKCCYKS 373 (411)
Q Consensus 306 ~y~v~l~~i~vgg~~~~~--~-------~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~---~~~~~~~~~Cy~~ 373 (411)
+|+|+|++|+||++++.. . ...+||||||++|+||+++|++|+++|.+++..... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 599999999999998862 2 346999999999999999999999999999976642 2334678999999
Q ss_pred cC----CCCCCCCeEEEEeCCCcEEEEeCCeEEEEecc
Q 015211 374 SS----QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 407 (411)
Q Consensus 374 ~~----~~~~~~P~i~f~f~gg~~~~i~~~~yi~~~~~ 407 (411)
+. .....+|+|+|||+||++++|++++|+++.++
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~ 118 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP 118 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC
Confidence 88 34568999999999899999999999999764
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.76 E-value=0.00014 Score=57.28 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=60.8
Q ss_pred eEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q 015211 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 180 (411)
Q Consensus 102 ~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~C~~ 180 (411)
.|++++.|+ .+++.+++|||++.+|+... ...+. . + ..
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---------------~--~-----~~----------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---------------L--P-----LT----------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---------------C--C-----cc-----------------
Confidence 578999999 69999999999999999863 11111 0 0 00
Q ss_pred CCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecCC
Q 015211 181 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 251 (411)
Q Consensus 181 ~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~ 251 (411)
......+...+| .........+.+++++. ...++.+........ ..|||||+.+
T Consensus 41 --~~~~~~~~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 123556666665 34455566888999875 455666666554321 4699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.48 E-value=0.14 Score=42.39 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=29.3
Q ss_pred ecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEec
Q 015211 95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 95 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
+.-..+..|++++.|. .+++.+++|||++.+-+..
T Consensus 4 i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 4 LAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 3345577899999997 6899999999999998875
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.78 E-value=0.29 Score=37.44 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEeCCCCeEEEEEEEcCCCceEEec
Q 015211 106 WIDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 106 ~i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
++.|+ .+++.+++|||++.+.+..
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~ 25 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISR 25 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECH
Confidence 46677 5899999999999988875
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.73 E-value=0.34 Score=40.29 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.9
Q ss_pred CceEEEEEEeCCCCeEEEEEEEcCCCceEEecC
Q 015211 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD 132 (411)
Q Consensus 100 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 132 (411)
...+|+++.|+ ++++.+++|||++..++...
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45788999998 68999999999999999764
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.91 E-value=0.2 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCeEEEEEEEcCCCceEEec
Q 015211 103 HYTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 103 y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
||+++.|+ .+++.+++||||+..++..
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCH
Confidence 57889998 6999999999999999986
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=89.82 E-value=4.6 Score=39.69 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=16.9
Q ss_pred eeCCCCceeeeeEEEEEEEeecC
Q 015211 190 DYYTENTSSSGLLVEDILHLISG 212 (411)
Q Consensus 190 ~Y~~g~s~~~G~~~~D~v~l~~~ 212 (411)
.|++| ..-|-+.+-.|+|+++
T Consensus 83 ~F~sg--ytWGsVr~AdV~igge 103 (370)
T PF11925_consen 83 QFASG--YTWGSVRTADVTIGGE 103 (370)
T ss_pred hccCc--ccccceEEEEEEEcCe
Confidence 46775 5668999999999987
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.68 E-value=1.8 Score=32.19 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.5
Q ss_pred CceEEEEEEeCCCCeEEEEEEEcCCCceEEecC
Q 015211 100 GWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD 132 (411)
Q Consensus 100 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~ 132 (411)
...+++++.|| ++.+.+++|||++...|+.+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 46889999999 59999999999999999874
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.24 E-value=1.9 Score=35.62 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=28.2
Q ss_pred eeEEEeeeeeEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 305 ITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 305 ~~y~v~l~~i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
++|.+. +.|||+.+ ..+||||.+.+.++++..+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 677666 67888744 699999999999999985544
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=85.03 E-value=1.3 Score=34.40 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.9
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
+.|+|+.+. .+||||.+.+.++++.+.++
T Consensus 5 ~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 678888765 99999999999999987655
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.30 E-value=1.3 Score=33.63 Aligned_cols=29 Identities=10% Similarity=0.400 Sum_probs=23.4
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
++|+|+.+ .++||||.+.+.+.+++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56777644 599999999999999986554
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=83.13 E-value=1.9 Score=33.85 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.3
Q ss_pred EEEEEeCCCCeEEEEEEEcCCCceEEec
Q 015211 104 YTWIDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 104 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
+.+|.|. .+++.+++||||+.+-++.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecc
Confidence 4567887 5899999999999999986
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.35 E-value=18 Score=32.70 Aligned_cols=83 Identities=8% Similarity=-0.019 Sum_probs=57.1
Q ss_pred CCCceeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccC
Q 015211 88 QGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSC 167 (411)
Q Consensus 88 ~~~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C 167 (411)
.|...+.+....+..|+++..|- +|++..++|||-+.+-++.. ... .--||.+..
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~--dA~-------------RlGid~~~l-------- 145 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE--DAR-------------RLGIDLNSL-------- 145 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH--HHH-------------HhCCCcccc--------
Confidence 34446677778888999999997 79999999999999888752 110 012444321
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecC
Q 015211 168 SHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISG 212 (411)
Q Consensus 168 ~~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~ 212 (411)
..++.+.-++| ......+-.|.|.||+.
T Consensus 146 ----------------~y~~~v~TANG-~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 146 ----------------DYTITVSTANG-RARAAPVTLDRVQIGGI 173 (215)
T ss_pred ----------------CCceEEEccCC-ccccceEEeeeEEEccE
Confidence 24556666776 34456688899999875
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=80.78 E-value=3 Score=32.05 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=23.0
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
+.||++.+ .++||||.+.++++.+..+++
T Consensus 7 v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 67776554 599999999999999875544
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.73 E-value=2.5 Score=31.40 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=23.8
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
+.|+|+.+. +++|||.+-.+++++..+.+
T Consensus 13 ~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 677876654 99999999999999985554
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=75.89 E-value=3.9 Score=31.71 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEeCCCCeEEEEEEEcCCCceEEec
Q 015211 107 IDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 107 i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
+.|+ .|.+.+++|||+|++-+..
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEcc
Confidence 5666 6999999999999999975
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.11 E-value=7.2 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEeCCCCeEEEEEEEcCCCceEEec
Q 015211 107 IDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 107 i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
+.|. ++++.+++|||++.+-+..
T Consensus 3 v~In--G~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEECH
Confidence 5565 6899999999999999976
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.37 E-value=6.9 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.4
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777755 489999999999999986554
No 44
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=63.90 E-value=8.2 Score=31.88 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=22.8
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYET 346 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~ 346 (411)
+.|+|+.+ .++||||.+.++++++..++
T Consensus 21 ~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 21 VEINGVPV-----KAFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred EEECCEEE-----EEEEeCCCceEEeCHHHHHH
Confidence 56777755 48999999999999998554
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=60.65 E-value=6 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=21.0
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVY 344 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y 344 (411)
|.++|+.+ .++||||...++++++.+
T Consensus 10 v~i~g~~i-----~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKI-----KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEE-----EEEEETTBSSEEESSGGS
T ss_pred EeECCEEE-----EEEEecCCCcceeccccc
Confidence 56666654 599999999999999863
No 46
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=59.43 E-value=16 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=28.7
Q ss_pred ceeEEEeeeeeEeCCeeeccCcccEEEecCCcccccCHHHHH
Q 015211 304 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYE 345 (411)
Q Consensus 304 ~~~y~v~l~~i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~ 345 (411)
.+||.++ ..|||+.+. .++|||.|.+.|+++.-+
T Consensus 103 ~GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~ 136 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDAR 136 (215)
T ss_pred CCcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHH
Confidence 4788777 789999886 899999999999998733
No 47
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=55.41 E-value=13 Score=29.15 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.9
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIA 348 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l~ 348 (411)
+.++|+ ....+.+|||.+...+|...|+.+-
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 556663 2346899999999999999977764
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.48 E-value=23 Score=29.38 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=22.8
Q ss_pred eEeCCeeeccCcccEEEecCCcccccCHHHHHHH
Q 015211 314 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 314 i~vgg~~~~~~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
++|||+.+. |+||||.-.+..+.+..+++
T Consensus 29 ~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 778888775 99999999999999986653
No 49
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.59 E-value=15 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.8
Q ss_pred EEEecCCc-ccccCHHHHHHH
Q 015211 328 AIVDSGSS-FTFLPKEVYETI 347 (411)
Q Consensus 328 ~iiDSGTs-~t~lp~~~y~~l 347 (411)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 49999999 999999997765
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=43.11 E-value=19 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=25.5
Q ss_pred ceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCC
Q 015211 101 WLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCA 137 (411)
Q Consensus 101 ~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~ 137 (411)
...|+++.|+ .+++.+.+|||...+-+..+ +.+|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 3678899999 69999999999999999876 35564
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=41.75 E-value=32 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEeCCCCeEEEEEEEcCCCceEEec
Q 015211 106 WIDIGTPNVSFLVALDAGSDLLWIPC 131 (411)
Q Consensus 106 ~i~iGtP~q~~~v~~DTGS~~~Wv~~ 131 (411)
.+.+++-..++.++|||||..-++..
T Consensus 36 ~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 36 IVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEeecCcEEEEEEeCCCccceeeh
Confidence 46666667899999999999998876
No 52
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.28 E-value=22 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.6
Q ss_pred cccEEEecCCcccc-cCHHHHHHH
Q 015211 325 SFKAIVDSGSSFTF-LPKEVYETI 347 (411)
Q Consensus 325 ~~~~iiDSGTs~t~-lp~~~y~~l 347 (411)
...++||||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 45799999999886 999986554
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=32.80 E-value=1.2e+02 Score=26.62 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=19.1
Q ss_pred CcccEEEecCCcccccCHHHHHHH
Q 015211 324 TSFKAIVDSGSSFTFLPKEVYETI 347 (411)
Q Consensus 324 ~~~~~iiDSGTs~t~lp~~~y~~l 347 (411)
....++||||+...+...+.-+.|
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhh
Confidence 445699999999999999874444
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.23 E-value=75 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEeCCCC----eEEEEEEEcCCCceE-Eec
Q 015211 105 TWIDIGTPN----VSFLVALDAGSDLLW-IPC 131 (411)
Q Consensus 105 ~~i~iGtP~----q~~~v~~DTGS~~~W-v~~ 131 (411)
++|.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 467777772 368999999998664 554
No 55
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=29.21 E-value=1.2e+02 Score=25.40 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=16.0
Q ss_pred ccEEEecCCcccccCHHH
Q 015211 326 FKAIVDSGSSFTFLPKEV 343 (411)
Q Consensus 326 ~~~iiDSGTs~t~lp~~~ 343 (411)
..++||||.+-.++..+.
T Consensus 33 ~~vLiDSGAThsFIs~~~ 50 (135)
T PF08284_consen 33 ASVLIDSGATHSFISSSF 50 (135)
T ss_pred EEEEEecCCCcEEccHHH
Confidence 359999999999999887
No 56
>PF15240 Pro-rich: Proline-rich
Probab=28.48 E-value=37 Score=29.97 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhccccc
Q 015211 6 LTIYLAVFWLLTESSGAET 24 (411)
Q Consensus 6 ~~~ll~~~~~~~~~~~~~~ 24 (411)
|||||.+.+||+++|....
T Consensus 2 LlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD 20 (179)
T ss_pred hhHHHHHHHHHhhhccccc
Confidence 5555554446666555433
No 57
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=23.69 E-value=68 Score=30.25 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=17.0
Q ss_pred eeEeCCeeeccCcccEEEecCCcccccC
Q 015211 313 TCCIGSSCLKQTSFKAIVDSGSSFTFLP 340 (411)
Q Consensus 313 ~i~vgg~~~~~~~~~~iiDSGTs~t~lp 340 (411)
.|.||... ..+.++||||++.+++|
T Consensus 6 ~i~iGtp~---q~~~v~~DTgS~~~wv~ 30 (295)
T cd05474 6 ELSVGTPP---QKVTVLLDTGSSDLWVP 30 (295)
T ss_pred EEEECCCC---cEEEEEEeCCCCcceee
Confidence 36666532 24568888888888887
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.97 E-value=1.5e+02 Score=20.71 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=18.3
Q ss_pred cccEEEecCCcccccCHHHHHH
Q 015211 325 SFKAIVDSGSSFTFLPKEVYET 346 (411)
Q Consensus 325 ~~~~iiDSGTs~t~lp~~~y~~ 346 (411)
...+++|+|.+...+..+.++.
T Consensus 9 ~~~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 9 PVRALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEEEcCCCcccccCHHHHHH
Confidence 3469999999999999988654
No 59
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=20.93 E-value=89 Score=30.19 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=24.0
Q ss_pred eeEEEeeeeeEeCCeeeccCcccEEEecCCcccccCHH
Q 015211 305 ITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKE 342 (411)
Q Consensus 305 ~~y~v~l~~i~vgg~~~~~~~~~~iiDSGTs~t~lp~~ 342 (411)
..|.++ |+||.- ...+.++||||++.+++|..
T Consensus 7 ~~y~~~---i~iGtP---~q~~~v~~DTGSs~~Wv~~~ 38 (326)
T cd05487 7 TQYYGE---IGIGTP---PQTFKVVFDTGSSNLWVPSS 38 (326)
T ss_pred CeEEEE---EEECCC---CcEEEEEEeCCccceEEccC
Confidence 456664 778853 24567999999999999864
Done!