Query 015212
Match_columns 411
No_of_seqs 224 out of 597
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6a_A Eukaryotic translation 100.0 3.7E-45 1.3E-49 369.2 27.4 248 140-407 104-364 (364)
2 1ug3_A EIF4GI, eukaryotic prot 100.0 2E-41 6.8E-46 338.8 18.7 320 28-386 8-337 (339)
3 3jui_A Translation initiation 100.0 1.1E-35 3.6E-40 273.5 17.9 162 250-411 12-178 (182)
4 1paq_A Translation initiation 100.0 8E-36 2.7E-40 275.8 16.7 161 250-411 20-184 (189)
5 3d3m_A Eukaryotic translation 100.0 3.5E-31 1.2E-35 240.4 16.3 153 255-407 3-168 (168)
6 2ful_A EIF-5, eukaryotic trans 99.9 6.5E-26 2.2E-30 207.3 8.7 111 288-411 49-164 (177)
7 2iu1_A EIF5, eukaryotic transl 99.9 3.8E-22 1.3E-26 186.5 13.9 124 270-411 29-158 (208)
8 1h2v_C 80 kDa nuclear CAP bind 98.3 0.00024 8.1E-09 77.9 27.0 297 28-383 293-606 (771)
9 2zu6_B Programmed cell death p 87.9 20 0.00069 34.6 21.5 271 30-377 2-282 (307)
10 2rg8_A Programmed cell death p 86.8 0.92 3.2E-05 40.1 5.7 156 25-209 4-164 (165)
11 3eiq_C Programmed cell death p 66.2 1E+02 0.0036 30.3 21.3 272 24-377 47-333 (358)
12 4b8b_A General negative regula 45.8 2.2E+02 0.0075 30.0 12.8 53 251-303 446-498 (603)
13 3c5t_B Exendin-4, exenatide; l 44.5 11 0.00036 24.3 1.7 13 395-407 9-21 (31)
14 2bwb_A Ubiquitin-like protein 38.2 20 0.00067 24.8 2.4 25 28-52 17-43 (46)
15 3ig3_A Plxna3 protein; plexin 37.8 72 0.0025 33.8 7.7 103 31-155 24-129 (627)
16 2rg8_A Programmed cell death p 32.0 2.5E+02 0.0084 24.2 12.2 128 250-390 7-137 (165)
17 2g49_C Glucagon preproprotein; 28.5 26 0.00089 22.1 1.5 12 395-406 17-28 (29)
18 2jy5_A Ubiquilin-1; UBA, alter 28.1 35 0.0012 24.0 2.4 27 27-53 21-49 (52)
19 3clj_A Protein NRD1; CTD-inter 28.0 1.2E+02 0.0042 26.3 6.4 48 120-171 94-142 (157)
20 2v75_A Nuclear polyadenylated 27.5 1.4E+02 0.0049 24.0 6.1 62 128-195 14-78 (104)
21 2knz_A Ubiquilin-4; cytoplasm, 27.2 36 0.0012 24.0 2.4 25 28-52 21-47 (53)
22 1vej_A Riken cDNA 4931431F19; 27.1 54 0.0019 25.0 3.5 26 27-52 38-65 (74)
23 1jrj_A Exendin-4; Trp-CAGE, GL 25.4 32 0.0011 23.2 1.7 13 395-407 17-29 (39)
24 2ion_A PDCD4, programmed cell 24.9 1.2E+02 0.0042 25.9 5.8 60 107-169 65-127 (152)
25 2l63_A GLP-2, glucagon-like pe 24.2 36 0.0012 22.1 1.7 13 395-407 17-29 (33)
26 4adz_A CSOR; transcription, co 23.8 3E+02 0.01 23.4 7.8 29 257-285 65-93 (136)
27 3d9j_A RNA-binding protein 16; 23.1 2.2E+02 0.0074 24.0 7.0 91 57-171 34-132 (145)
28 1wr1_B Ubiquitin-like protein 22.7 49 0.0017 24.0 2.4 25 28-52 27-53 (58)
29 1t5q_A Gastric inhibitory poly 21.8 44 0.0015 21.2 1.7 12 395-406 17-28 (30)
30 3iol_B Glucagon; receptor-liga 21.8 41 0.0014 21.4 1.6 12 395-406 17-28 (31)
31 2b4n_A Gastric inhibitory poly 20.8 45 0.0016 22.8 1.7 15 394-408 16-30 (42)
No 1
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=369.18 Aligned_cols=248 Identities=16% Similarity=0.283 Sum_probs=218.3
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhcCC
Q 015212 140 ENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFP 219 (411)
Q Consensus 140 ~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~a~~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P 219 (411)
|.--..||.++|+++. +|.+|++.+... ++.|.+++|++++|+.+++++|.++++++|++||++ |++|||
T Consensus 104 P~a~~~la~f~ar~i~---~~~l~~~~l~~~-----l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlP 173 (364)
T 3l6a_A 104 PLVKSYLAQFAARAII---SELVSISELAQP-----LESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVN--MQKMLP 173 (364)
T ss_dssp TTHHHHHHHHHHHHHH---TTSSCHHHHHHH-----HGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSC
T ss_pred ccHHHHHHHHHHHHHH---cCCCCHHHHHHH-----hcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCC
Confidence 4457899999999999 999999999864 456999999999999999999999999999999998 999999
Q ss_pred CCCCChhhHHHHHHhcCCcccccchhhhhHHhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 015212 220 SSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDIL 299 (411)
Q Consensus 220 ~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~al 299 (411)
+++|+.++|.++|+++||++++++ .+++++|.++++++.++++|+.||+++..++++++++||+++|+|+
T Consensus 174 e~~~~~~~~~e~~~~~~L~~l~~~----------~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v 243 (364)
T 3l6a_A 174 EIDQNKDRMLEILEGKGLSFLFPL----------LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSF 243 (364)
T ss_dssp GGGCSHHHHHHHHHHHTCGGGCHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhCCCcccCCH----------HHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHH
Confidence 999999999999999999999864 3899999999999999999999999999999999999999999999
Q ss_pred HHHhh--hhcc---------chhhhHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHhhcchHHHhHHHHHHHHhh
Q 015212 300 MDAVQ--WSGK---------NQQQNANAALRQVKTWAQLLNTFCTNA-KLELELMYKVQMQCYEDAKLMKLFPEIVRSLY 367 (411)
Q Consensus 300 m~~v~--~s~k---------~~~~~~~~~~~~lk~~~pLL~~f~~~~-~~Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LY 367 (411)
|+++. ++.. +.........+.|++|+|+|++|+++. +.|+++|+++|.+|++......+++.|++.||
T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LY 323 (364)
T 3l6a_A 244 LQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFY 323 (364)
T ss_dssp HHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99984 3210 001112244578999999999999987 56999999999999963222346788999999
Q ss_pred hhcccchhhHHHhhhcCCC-cchHHHHHHhHHHHHHHhhhc
Q 015212 368 DQDVLAEDTILYWFRKGTN-PKGRQTFVKALEPFVKWLEEA 407 (411)
Q Consensus 368 d~DVlsEeaIlkW~~~~~~-~~Gk~~~lk~~~~FV~WLeEA 407 (411)
|.|||+||+|++||++.++ ..|+++++++++|||+||+||
T Consensus 324 d~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 324 DMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 364 (364)
T ss_dssp HTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998754 358999999999999999997
No 2
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=100.00 E-value=2e-41 Score=338.84 Aligned_cols=320 Identities=13% Similarity=0.169 Sum_probs=243.9
Q ss_pred hhhHHHHHHHhhc--CCCCHHHHHHHh-hcCCccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchhhhh
Q 015212 28 AAFSDAVVQIYLD--NAGDLELIAKCI-ESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAIL 104 (411)
Q Consensus 28 ~~f~d~~~~~~~~--~~~dle~~~~~l-~g~~ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~ 104 (411)
+.|...+-..+.+ ..||++.+...+ +=+...| +.+....++.. ..+ ++ + ..-.
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~---------~le---~~-------~---~~re 63 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVES---------TLE---RS-------A---IARE 63 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHH---------HTT---TC-------H---HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHH---------HhC---CC-------H---HHHH
Confidence 4455566666655 447999988888 2222222 33333333221 111 11 1 1233
Q ss_pred hHHHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCc-cchhhhhhccccCCCc
Q 015212 105 PSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPE-TVFQPLLKDNLVGKGL 180 (411)
Q Consensus 105 ~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~-~~l~~l~~~~Lv~~G~ 180 (411)
.-..+|..|....-.=...++.-..+++..+.-. -|..+.+||.++|++++ +|.+|+ +++.++. ++|+++|.
T Consensus 64 ~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~---~g~l~~~~l~~~~~-~~l~~~g~ 139 (339)
T 1ug3_A 64 HMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQ---EGGVPMGELFREIT-KPLRPLGK 139 (339)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGS---TTSCCHHHHHHHHT-TTHHHHTC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHH---CCCCCHHHHHHHHH-Hhhhccch
Confidence 4455666666553333344444455555555544 47799999999999999 999999 5555544 89999999
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhcCCCCCCChhhHHHHHHhcCCcccccchhhhhHH--hHHHHHHH
Q 015212 181 VLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFE--VKLKDMKS 258 (411)
Q Consensus 181 a~~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~--~~~~El~~ 258 (411)
+.+|++++|+.|++++|.+++.++|++|||+ |.+|||+++| +.++|+++||++++++..+++.. ....++++
T Consensus 140 ~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~--l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~ 213 (339)
T 1ug3_A 140 AASLLLEILGLLCKSMGPKKVGTLWREAGLS--WKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNR 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTCC--GGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHcCCC--HHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHH
Confidence 9999999999999999999999999999999 9999999985 78899999999999998766655 67899999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH-hhhhccchhhhHHHHHHHHHHHHHHHHHHhcChHH
Q 015212 259 TLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDA-VQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKL 337 (411)
Q Consensus 259 ~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~-v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~~~ 337 (411)
+|.++++++.++++|+.|||+++.++++++++|++++|+|+|+. +.|++. . ....+++++|+|+|++|+++.+.
T Consensus 214 ~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~---~--~~~~~~l~~~~pll~~~~~~~~~ 288 (339)
T 1ug3_A 214 QLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETP---L--RVDVAVLKARAKLLQKYLCDEQK 288 (339)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHHTEECSSS---C--EECHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHHHHhcCCc---h--HHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999998 455321 1 12347899999999999998999
Q ss_pred HHHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCC
Q 015212 338 ELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN 386 (411)
Q Consensus 338 Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~ 386 (411)
|+++|+|||.+|+++.+.+++|..|++.|||.|||+||+|++||++.++
T Consensus 289 ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d~ 337 (339)
T 1ug3_A 289 ELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKDP 337 (339)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcCCC
Confidence 9999999999999876677899999999999999999999999988554
No 3
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=100.00 E-value=1.1e-35 Score=273.47 Aligned_cols=162 Identities=22% Similarity=0.376 Sum_probs=143.0
Q ss_pred HhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhh--hcc-chhhhHHHHHHHHHHHHH
Q 015212 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQW--SGK-NQQQNANAALRQVKTWAQ 326 (411)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~--s~k-~~~~~~~~~~~~lk~~~p 326 (411)
..|.+|++.+|.+++++|+++++++.|||++++++|+|+++|++++|+|+|+.+.. ++. ......+.+.+.|++|+|
T Consensus 12 ~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ 91 (182)
T 3jui_A 12 KVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSP 91 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999743 221 123445578889999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCCc-chHH-HHHHhHHHHHHHh
Q 015212 327 LLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNP-KGRQ-TFVKALEPFVKWL 404 (411)
Q Consensus 327 LL~~f~~~~~~Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~~-~Gk~-~~lk~~~~FV~WL 404 (411)
+|.+|+++.+.|+++|+++|.+|++++.+++.|+.||+.|||.|||+||+|++||+++++. .|++ .++++++|||+||
T Consensus 92 ll~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL 171 (182)
T 3jui_A 92 VFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWL 171 (182)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 3654 5789999999999
Q ss_pred hhcccCC
Q 015212 405 EEAEEEE 411 (411)
Q Consensus 405 eEAEEEs 411 (411)
+||||||
T Consensus 172 ~eAEEEs 178 (182)
T 3jui_A 172 KEAEEES 178 (182)
T ss_dssp HHHHC--
T ss_pred hccCccc
Confidence 9999885
No 4
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=100.00 E-value=8e-36 Score=275.82 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=144.0
Q ss_pred HhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh-hhhccchhhhHHHHHHHHHHHHHHH
Q 015212 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV-QWSGKNQQQNANAALRQVKTWAQLL 328 (411)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v-~~s~k~~~~~~~~~~~~lk~~~pLL 328 (411)
..|++|++++|.+++++|+++++++.|||++++++|+|+++|++++|+|+|+.+ .|++++.....+.+.++|++|+|+|
T Consensus 20 ~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll 99 (189)
T 1paq_A 20 EDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLF 99 (189)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999999999998 5655433335668889999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHhh--cchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCCcc-hHHHHHHhHHHHHHHhh
Q 015212 329 NTFCTNAKLELELMYKVQMQCY--EDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-GRQTFVKALEPFVKWLE 405 (411)
Q Consensus 329 ~~f~~~~~~Ql~lL~alQ~~c~--e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~~~-Gk~~~lk~~~~FV~WLe 405 (411)
.+|+++.+.|+++|++||.||+ ++|++++.|+.||+.|||.|||+||+|++||++++... + .+++++++|||+||+
T Consensus 100 ~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~-~~v~~~~~~Fi~WL~ 178 (189)
T 1paq_A 100 KRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRY-DEVKKLTVKWVEWLQ 178 (189)
T ss_dssp GGTCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHH-HHHHHHHHHHHHHHh
Confidence 9999999999999999999999 78999999999999999999999999999999876433 4 388999999999999
Q ss_pred hcccCC
Q 015212 406 EAEEEE 411 (411)
Q Consensus 406 EAEEEs 411 (411)
||||||
T Consensus 179 eAEeEs 184 (189)
T 1paq_A 179 NADEES 184 (189)
T ss_dssp HTC---
T ss_pred ccCccc
Confidence 999885
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.97 E-value=3.5e-31 Score=240.39 Aligned_cols=153 Identities=16% Similarity=0.351 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhhh--c-cch--h--h----hHHHHHHHHHH
Q 015212 255 DMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWS--G-KNQ--Q--Q----NANAALRQVKT 323 (411)
Q Consensus 255 El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s--~-k~~--~--~----~~~~~~~~lk~ 323 (411)
+++++|.++++++++++.|+.||+++....++++++|++++|+|+|+++.+. + ++. . . ..+.+.+++++
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~ 82 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 82 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998763 2 211 0 1 23577889999
Q ss_pred HHHHHHHHhcC-hHHHHHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCC-cchHHHHHHhHHHHH
Q 015212 324 WAQLLNTFCTN-AKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN-PKGRQTFVKALEPFV 401 (411)
Q Consensus 324 ~~pLL~~f~~~-~~~Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~-~~Gk~~~lk~~~~FV 401 (411)
|+|+|.+|+++ .+.|+++|+++|.||++++.+++.|+.||+.|||.|||+||+|++||+++++ .+|+++++++++|||
T Consensus 83 ~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi 162 (168)
T 3d3m_A 83 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWL 162 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 99999999986 7999999999999999988888999999999999999999999999998764 468899999999999
Q ss_pred HHhhhc
Q 015212 402 KWLEEA 407 (411)
Q Consensus 402 ~WLeEA 407 (411)
+||+||
T Consensus 163 ~WL~eA 168 (168)
T 3d3m_A 163 TWLETA 168 (168)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999997
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.5e-26 Score=207.28 Aligned_cols=111 Identities=23% Similarity=0.454 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh-hcchHHHhHHHHHHHHh
Q 015212 288 DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQC-YEDAKLMKLFPEIVRSL 366 (411)
Q Consensus 288 ~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~~~Ql~lL~alQ~~c-~e~~~~~k~f~~IL~~L 366 (411)
.++++.++|.|+|+. .+.++|++|+|+|.+|+++.+.|+++|++||.|| ++++++++.|+.||+.|
T Consensus 49 ~~~~~~vl~~~lf~~-------------~i~~~l~k~~~lL~~~~~~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~L 115 (177)
T 2ful_A 49 DPKIGCVLAQCLFDE-------------DIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQL 115 (177)
T ss_dssp CTTHHHHHHHHSCST-------------THHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHhch-------------hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 378999999999952 3457899999999999998999999999999999 47899999999999999
Q ss_pred hhhcccchhhHHHhhhcCCC----cchHHHHHHhHHHHHHHhhhcccCC
Q 015212 367 YDQDVLAEDTILYWFRKGTN----PKGRQTFVKALEPFVKWLEEAEEEE 411 (411)
Q Consensus 367 Yd~DVlsEeaIlkW~~~~~~----~~Gk~~~lk~~~~FV~WLeEAEEEs 411 (411)
||.|||+||+|++||+++++ .+|+++++++++|||+||+||||||
T Consensus 116 Yd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEs 164 (177)
T 2ful_A 116 YNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDD 164 (177)
T ss_dssp HHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC---
T ss_pred hccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999999999998763 3567889999999999999999875
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=186.51 Aligned_cols=124 Identities=27% Similarity=0.481 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHH
Q 015212 270 MSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCT-NAKLELELMYKVQMQ 348 (411)
Q Consensus 270 ~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~-~~~~Ql~lL~alQ~~ 348 (411)
.++|+.+.+.+.. .+....+++.++|+. .+.++|++|+|+|.+|++ +.+.|+++|++||.|
T Consensus 29 ~~~i~~ea~~l~~-----k~~~~~vl~e~lf~~-------------~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~ 90 (208)
T 2iu1_A 29 DKEIVAEAERLDV-----KAMGPLVLTEVLFNE-------------KIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECV 90 (208)
T ss_dssp HHHHHHHHHHTTC-----GGGHHHHHHHHHCST-------------THHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcch-----HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3477777765433 235555666666632 345789999999999998 569999999999999
Q ss_pred hh-cchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCCcc-h---HHHHHHhHHHHHHHhhhcccCC
Q 015212 349 CY-EDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPK-G---RQTFVKALEPFVKWLEEAEEEE 411 (411)
Q Consensus 349 c~-e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~~~-G---k~~~lk~~~~FV~WLeEAEEEs 411 (411)
|. ++|++++.|+.||+.|||.|||+||+|++||+++++.+ + ...++++++|||+||+||||||
T Consensus 91 ~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEEs 158 (208)
T 2iu1_A 91 VAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEES 158 (208)
T ss_dssp HHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred HHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcccccc
Confidence 75 46899999999999999999999999999999876542 1 1257999999999999999875
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.29 E-value=0.00024 Score=77.85 Aligned_cols=297 Identities=8% Similarity=0.098 Sum_probs=205.2
Q ss_pred hhhHHHHHHHhhcCCCCHHHHHHHhhcCC--ccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeecc----Ccchh
Q 015212 28 AAFSDAVVQIYLDNAGDLELIAKCIESSD--LNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDC----EPQRE 101 (411)
Q Consensus 28 ~~f~d~~~~~~~~~~~dle~~~~~l~g~~--ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~----~~~~~ 101 (411)
..|||.++.+++--.+|-+..|+.|-+=. -.+ ++.+.+.| |||.. |.+.-
T Consensus 293 ~l~re~ildIi~~~~~nrkecA~~Ll~l~~~~~~-~~e~~iVE-----------------------~i~~el~~LP~p~~ 348 (771)
T 1h2v_C 293 FVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKI-PLNYHIVE-----------------------VIFAELFQLPAPPH 348 (771)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCC-CHHHHHHH-----------------------HHHHHHTCSSCCSS
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcc-cHHHHHHH-----------------------HHHHHHhcCCCCch
Confidence 46899999999988788899999993310 000 11222222 33332 33333
Q ss_pred hhhhHHHHHHHHHhhh-hhhHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHhhhcCCC--CCccchhhhhhccccCC
Q 015212 102 AILPSVIYIQKILRRR-PFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGL--PPETVFQPLLKDNLVGK 178 (411)
Q Consensus 102 ~~~~~~~~~~kl~rr~-kyl~k~~e~~~~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~--~~~~~l~~l~~~~Lv~~ 178 (411)
...-|-.|++.|-+.- +=+...|+..+..+-.-|+..+.+-+.++|-..|..+| |-. .|=+....-+. +-..
T Consensus 349 ~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLS---NF~f~W~W~eW~~~~e--~~~~ 423 (771)
T 1h2v_C 349 IDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLS---NFQFRWSWEDWSDCLS--QDPE 423 (771)
T ss_dssp CHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHT---TTTTCCCGGGGGGGTT--SCTT
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh---cCCcCccHHHhHHhhc--CCcc
Confidence 4468888999999998 45677899999999999999999999999999999999 883 45554433211 1123
Q ss_pred CchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhcCCCCCCChhhHHHHHHhcCCcccccchhhhhHHhHHHHHHH
Q 015212 179 GLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKS 258 (411)
Q Consensus 179 G~a~~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~ 258 (411)
.-.-.|+..+|+..++....+.+... |-+-+..++|+.. .+ +| .|............+..
T Consensus 424 ~p~r~Fik~ll~k~~RLSy~~rIk~~-----lP~~~~~llp~~p-~p-~f-------------~y~~e~~~~~p~~~~a~ 483 (771)
T 1h2v_C 424 SPKPKFVREVLEKCMRLSYHQRILDI-----VPPTFSALCPSNP-TC-IY-------------KYGDESSNSLPGHSVAL 483 (771)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHTT-----SCGGGGGGSCCCC-CC-CC-------------TTSTTSCTTSTTHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHh-----CcHHHHhhCCCCC-CC-Cc-------------eeCCccccCCcchHHHH
Confidence 33456999999999998877776543 3333777888742 22 22 22111100011234567
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhhcCCC--------hHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHH
Q 015212 259 TLTTQIAEETEMSEVIESVKQRVKDAKLP--------DIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNT 330 (411)
Q Consensus 259 ~L~~~l~e~~~~~~ii~eIk~~~~~~n~s--------~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~ 330 (411)
.|...+.+..++++|..+|++......-. ++..+.+++++++.... | +-.-....|++|.++|..
T Consensus 484 ~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~Gs---k----S~SH~~~~lery~~~lk~ 556 (771)
T 1h2v_C 484 CLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAA---K----SFSHSFSALAKFHEVFKT 556 (771)
T ss_dssp HHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHST---T----CHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhcc---c----hHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999844332211 12467777788877642 2 112345689999999999
Q ss_pred HhcChHHHHHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhHHHhhhc
Q 015212 331 FCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRK 383 (411)
Q Consensus 331 f~~~~~~Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~ 383 (411)
++.+++.|..+|.++-.|...+|.. ...++..|-+.+||+-.+|..|-=+
T Consensus 557 l~~~~~~q~~il~~v~~~W~~~~q~---~~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 557 LAESDEGKLHVLRVMFEVWRNHPQM---IAVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HTSSHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCce---EehHHHHHHhcCCCCHHHHHHHHcC
Confidence 9998899999999999999888875 3667799999999999999999843
No 9
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=87.91 E-value=20 Score=34.60 Aligned_cols=271 Identities=12% Similarity=0.129 Sum_probs=138.4
Q ss_pred hHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchhhhhhHH
Q 015212 30 FSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSV 107 (411)
Q Consensus 30 f~d~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 107 (411)
|...+..++++ ..||.+.++..|.. |+...|...|-..+|.=++ | +.+ ..+| .-.
T Consensus 2 ~~k~~~~ii~EYf~~~d~~Ea~~~l~e--l~~p~~~~~~v~~~i~~al---------d--r~~-------~erE---~~s 58 (307)
T 2zu6_B 2 FEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL---------E--GKA-------SHRE---MTS 58 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHT--TCCGGGGGGHHHHHHHHHH---------T--SCH-------HHHH---HHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHH--hCCcchHHHHHHHHHHHHh---------C--CCH-------HHHH---HHH
Confidence 33344444444 33699999998832 4445566667666654221 1 111 1222 112
Q ss_pred HHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchHHH
Q 015212 108 IYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSF 184 (411)
Q Consensus 108 ~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~a~~f 184 (411)
.++.-|- ..-.=...++.-+.++|.++.-. .|.--+.||.++|+++. +|.+|++.+........-..|. -
T Consensus 59 ~LLs~L~-~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~---d~~l~~~~l~~~~~~~~~~~g~---~ 131 (307)
T 2zu6_B 59 KLLSDLC-GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGTVDCVQAR---A 131 (307)
T ss_dssp HHHHHHH-HHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTTTGGGTTTCCCHHHH---H
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccchHHH---H
Confidence 2333332 11111223333455666666555 46678999999999999 9999999999866543222222 1
Q ss_pred HHHHHHHHHHhC-ChhHHHHHHHhCCCchhhhhcCCCCCCChhhHHHHHHhcCCcccccchhhhhHHhHHHHHHHHHHHH
Q 015212 185 ITDFFKEYLVDN-SLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQ 263 (411)
Q Consensus 185 l~~i~~~~~~~~-~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~~~~L~~l~~~~~~~~~~~~~~El~~~L~~~ 263 (411)
.+..-+.+++.+ |. .++++.|-. |...++ .+.+.+.+...|.+.
T Consensus 132 ~l~~a~~~l~~~~~~---------~~~~~~WG~--~~~~~~------------------------~eelkkki~~lL~EY 176 (307)
T 2zu6_B 132 ALDKATVLLSMSKGG---------KRKDSVWGS--GGGQQS------------------------VNHLVKEIDMLLKEY 176 (307)
T ss_dssp HHHHHHHHHHTCC-------------CCCSSCC--CSTTSC------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccH---------hHHhhhcCC--CCCCCC------------------------HHHHHHHHHHHHHHH
Confidence 111112222211 00 112211211 111112 234445666666666
Q ss_pred HHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHH-HHHhcChHHH---H
Q 015212 264 IAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLL-NTFCTNAKLE---L 339 (411)
Q Consensus 264 l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL-~~f~~~~~~Q---l 339 (411)
+.. .+.+++..-|+++..+. -.++++..++...|+.. .+...+...+.+.. +. ...++..+.+ .
T Consensus 177 ~~~-~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~------~~~~re~~~~LL~~---L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 177 LLS-GDISEAEHCLKELEVPH--FHHELVYEAIIMVLEST------GESTFKMILDLLKS---LWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHH-CCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCC------SSHHHHHHHHHHHH---HHHHCSSCHHHHHHHHH
T ss_pred HcC-CCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccC------ChHHHHHHHHHHHH---HHHCCCCCHHHHHHHHH
Confidence 654 47788888888886552 24566666555555431 01111122222221 11 1222222111 1
Q ss_pred HHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhH
Q 015212 340 ELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 377 (411)
Q Consensus 340 ~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaI 377 (411)
.++..+.....+-|+.-.++..++......++|+..-+
T Consensus 245 ~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~ 282 (307)
T 2zu6_B 245 RIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLR 282 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHH
Confidence 34445555666668877788999999999999997544
No 10
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=86.80 E-value=0.92 Score=40.15 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=85.6
Q ss_pred CCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchhh
Q 015212 25 LDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREA 102 (411)
Q Consensus 25 ~dp~~f~d~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~ 102 (411)
..+..|+..+...+++ ..+|.+.+...+.- |....|.-.+-..+|.= .-| +. +..+|
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~e--L~~p~~~~~~V~~~I~~---------ald--rk-------~~ere- 62 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSL---------ALE--GK-------ASHRE- 62 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HTCSGGGGHHHHHHHHH---------HHT--SC-------HHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--hCCcccHHHHHHHHHHH---------HHc--CC-------HHHHH-
Confidence 4566788877777777 44799999998821 22234555566655531 111 11 11122
Q ss_pred hhhHHHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCC
Q 015212 103 ILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKG 179 (411)
Q Consensus 103 ~~~~~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G 179 (411)
.-..++..| ..--.=...+++-+..+|.++.-. .|.--+.||.++|+++. +|.+|++.+...........|
T Consensus 63 --~~s~LL~~L-~~~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~---d~~l~~~~l~~~~~~~~~~~~ 136 (165)
T 2rg8_A 63 --MTSKLLSDL-CGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYKGTVDCVQA 136 (165)
T ss_dssp --HHHHHHHHH-BTTTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCTTHHHHTTTTCCCHHH
T ss_pred --HHHHHHHHH-HHCCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHH---cCCCCHHHHHHHHhccCchHH
Confidence 223455555 332222333444455555555554 45667999999999999 999999999987766555555
Q ss_pred chHHHHHHHHHHHHHhCChhHHHHHHHhCC
Q 015212 180 LVLSFITDFFKEYLVDNSLDDLIAILKRGK 209 (411)
Q Consensus 180 ~a~~fl~~i~~~~~~~~~~~~l~~~lrksg 209 (411)
...-+..+ ..++...|..++..+|.-+|
T Consensus 137 ~~~l~~a~--~ll~~~~~~~~~~~~Wg~g~ 164 (165)
T 2rg8_A 137 RAALDKAT--VLLSMSKGGKRKDSVWGSGG 164 (165)
T ss_dssp HHHHHHHH--HHHHTC--------------
T ss_pred HHHHHHHH--HHHhccccHHHHHhhcCCCC
Confidence 54444444 55577889999999997654
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.25 E-value=1e+02 Score=30.25 Aligned_cols=272 Identities=14% Similarity=0.208 Sum_probs=133.4
Q ss_pred CCCchhhHHHHHHHhhc--CCCCHHHHHHHhhcCCccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchh
Q 015212 24 PLDPAAFSDAVVQIYLD--NAGDLELIAKCIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQRE 101 (411)
Q Consensus 24 ~~dp~~f~d~~~~~~~~--~~~dle~~~~~l~g~~ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~ 101 (411)
..++..|...+..++.+ ..+|.+.++..|.. |+...|.-.+-..+|.=.+ | |++ .++|
T Consensus 47 ~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~e--L~~p~~~~~~v~~~I~~aL---------d--r~~-------~erE 106 (358)
T 3eiq_C 47 PLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRD--LNLGEMKSGVPVLAVSLAL---------E--GKA-------SHRE 106 (358)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--TTCCGGGGGHHHHHHHHHT---------T--SCH-------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--hCCchhHHHHHHHHHHHHh---------c--CCh-------HHHH
Confidence 44556787777777666 34788888888832 3333444455555544222 1 111 0111
Q ss_pred hhhhHHHHHHHHHhhhhhh-HHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccC
Q 015212 102 AILPSVIYIQKILRRRPFL-IKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVG 177 (411)
Q Consensus 102 ~~~~~~~~~~kl~rr~kyl-~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~ 177 (411)
- -.+++..|. - +.+ ...++.-..++|.++.-. .|.--..||.++|+++. +|.+|++.|.... .++
T Consensus 107 ~---~s~LLs~L~-~-~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~---d~~l~~~~l~~~~-~~~-- 175 (358)
T 3eiq_C 107 M---TSKLLSDLC-G-TVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG---DGILCNTYIDSYK-GTV-- 175 (358)
T ss_dssp H---HHHHHHTTT-T-TSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHH---TTCSCSSTTGGGC------
T ss_pred H---HHHHHHHHH-h-CCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHH---hCCCCHHHHHHHh-hcc--
Confidence 0 011222221 1 111 111222233444444443 46677899999999999 9999999998732 221
Q ss_pred CCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhcCCCCCCChhhHHHHHH-hcCCcccccchhhhhHHhHHHHH
Q 015212 178 KGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFT-KEGLIPLVEYNEKKIFEVKLKDM 256 (411)
Q Consensus 178 ~G~a~~fl~~i~~~~~~~~~~~~l~~~lrksgl~~~l~~f~P~~kr~~e~f~~~f~-~~~L~~l~~~~~~~~~~~~~~El 256 (411)
++.. .. ++++++.. ++.. +...+++....- ..|+ +..+...+.+
T Consensus 176 ~~~~---~~----------------~~l~~a~~---~L~~----~~~~~~~~~~WG~g~~~---------~~veelkkki 220 (358)
T 3eiq_C 176 DCVQ---AR----------------AALDKATV---LLSM----SKGGKRKDSVWGSGGGQ---------QPVNHLVKEI 220 (358)
T ss_dssp CCHH---HH----------------HHHHHHHH---HHTC-------------CCCCCCSS---------SCHHHHHHHH
T ss_pred cchH---HH----------------HHHHHHHH---HHhc----cchHHHHHHhcCCCCCC---------ccHHHHHHHH
Confidence 1111 11 22222220 1110 011111111000 0011 1223345566
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHhcCh-
Q 015212 257 KSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNA- 335 (411)
Q Consensus 257 ~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~- 335 (411)
...|.+.+.. .+.++...-|+++..+. -.++++...+...|+.. .+... .....||...+...
T Consensus 221 ~~lL~EY~~s-~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~------~~~~r-------e~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLS-GDISEAEHCLKELEVPH--FHHELVYEAIVMVLEST------GESAF-------KMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHH-CCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCC------SSHHH-------HHHHHHHHHHHHTTC
T ss_pred HHHHHHhccC-CCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccC------chHHH-------HHHHHHHHHHHHCCC
Confidence 6677777765 47788888888886542 34677776665555531 01111 11223444443321
Q ss_pred --HHH-----HHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhH
Q 015212 336 --KLE-----LELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 377 (411)
Q Consensus 336 --~~Q-----l~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaI 377 (411)
..| ..++..+.....+-|+.-.++..++......++|+-.-+
T Consensus 285 ls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~ 333 (358)
T 3eiq_C 285 ITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLR 333 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHH
Confidence 111 123444455555557777788999999999999998443
No 12
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=45.77 E-value=2.2e+02 Score=30.05 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q 015212 251 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAV 303 (411)
Q Consensus 251 ~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v 303 (411)
...+|+..-.++++..+.+.++++..++.++.+.+--++++..+++..+++-.
T Consensus 446 dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEy 498 (603)
T 4b8b_A 446 DIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAES 498 (603)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999888888899999999998864
No 13
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=44.54 E-value=11 Score=24.29 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.3
Q ss_pred HhHHHHHHHhhhc
Q 015212 395 KALEPFVKWLEEA 407 (411)
Q Consensus 395 k~~~~FV~WLeEA 407 (411)
+.++.||.||.+.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 4578899999864
No 14
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=38.25 E-value=20 Score=24.77 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 015212 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (411)
Q Consensus 28 ~~f--~d~~~~~~~~~~~dle~~~~~l 52 (411)
-+| |++.++.|..+.||.+....+|
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 356 6788899999999999888877
No 15
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=37.85 E-value=72 Score=33.81 Aligned_cols=103 Identities=16% Similarity=0.319 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHhhcC---CccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchhhhhhHH
Q 015212 31 SDAVVQIYLDNAGDLELIAKCIESS---DLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSV 107 (411)
Q Consensus 31 ~d~~~~~~~~~~~dle~~~~~l~g~---~ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 107 (411)
|+..=+++.+--.|...+.+-|.|+ -|||+.|..-.| | ||.. .+|. +.....+..+..=.
T Consensus 24 r~ecK~aFaELqt~m~dlt~dl~~~giPfLdyk~y~~rv~---F------P~~~------~hp~--l~~~~~~~~~e~~l 86 (627)
T 3ig3_A 24 ALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVL---F------PGIE------AHPV--LKELDTPPNVEKAL 86 (627)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC---CCCCBCCHHHHHHHHH---S------TTCT------TCGG--GSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHccchhhhhhccccCCCCCcChHHHHHhhc---C------CCCC------CCcc--ccccccCCCHHHHH
Confidence 3334444433222334444455333 489999998654 4 4431 1221 11111122344555
Q ss_pred HHHHHHHhhhhhhHHHhHHHHHHHHHHhhccChhhhHHHHHHHHHHHh
Q 015212 108 IYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFS 155 (411)
Q Consensus 108 ~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f~~~~r~klA~~~a~~~~ 155 (411)
.-|.+||....||..-+ +.|-.=+.|+..+|-.+|-++-.++.
T Consensus 87 ~~f~~LL~nk~FLl~fI-----~tLE~q~~Fs~rDr~~vASLL~vaL~ 129 (627)
T 3ig3_A 87 RLFGQLLHSRAFLLTFI-----HTLEAQSSFSMRDRGTVASLTMVALQ 129 (627)
T ss_dssp HHHHHHTTCHHHHHHHH-----HHHHTCTTCCHHHHHHHHHHHHHHTG
T ss_pred HHHHHHhcccHHHHHHH-----HHHhcCCCcchhcchhhHHHHHHHhc
Confidence 67888999988887533 34444478999999999988766655
No 16
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.02 E-value=2.5e+02 Score=24.20 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHHHH
Q 015212 250 EVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLN 329 (411)
Q Consensus 250 ~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~ 329 (411)
+.+.+.+...+.+.+.. .+.++++.-++++..+. -.+.|+..+++..|+.-. ...+.+.+.+.. |..
T Consensus 7 ee~~kk~~~ii~EYf~~-~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~-------~ere~~s~LL~~---L~~ 73 (165)
T 2rg8_A 7 RAFEKTLTPIIQEYFEH-GDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKA-------SHREMTSKLLSD---LCG 73 (165)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCH-------HHHHHHHHHHHH---HBT
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH---HHH
Confidence 45556666667777654 57788888888876433 345666666665555421 111122222222 111
Q ss_pred HHhcChHH---HHHHHHHHHHHhhcchHHHhHHHHHHHHhhhhcccchhhHHHhhhcCCCcchH
Q 015212 330 TFCTNAKL---ELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGR 390 (411)
Q Consensus 330 ~f~~~~~~---Ql~lL~alQ~~c~e~~~~~k~f~~IL~~LYd~DVlsEeaIlkW~~~~~~~~Gk 390 (411)
+.++..+- =..+|..+.....+-|..-.++..++-...-.|++.-.-+-.=..+.....|+
T Consensus 74 ~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~ 137 (165)
T 2rg8_A 74 TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR 137 (165)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHH
Confidence 22222221 12445555666667677777888888999999999987766555553344454
No 17
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=28.50 E-value=26 Score=22.11 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred HhHHHHHHHhhh
Q 015212 395 KALEPFVKWLEE 406 (411)
Q Consensus 395 k~~~~FV~WLeE 406 (411)
..++.||+||.+
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 457889999975
No 18
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=28.06 E-value=35 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=22.6
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHhh
Q 015212 27 PAAF--SDAVVQIYLDNAGDLELIAKCIE 53 (411)
Q Consensus 27 p~~f--~d~~~~~~~~~~~dle~~~~~l~ 53 (411)
--+| |++.++.|..++||+|....+|-
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3578 88889999999999999888883
No 19
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=28.02 E-value=1.2e+02 Score=26.33 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=36.9
Q ss_pred hHHHhHHHHHHHHHH-hhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhh
Q 015212 120 LIKNLENVTRRFMQS-LELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (411)
Q Consensus 120 l~k~~e~~~~~~l~~-l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~ 171 (411)
+.+ +.+.++.++.- +..=++++|.|+-.++-+|=- ++.-|+.++.++.
T Consensus 94 v~~-~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k---~~~Fp~e~i~~i~ 142 (157)
T 3clj_A 94 INT-LGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDR---SGLFQKSYLNAIR 142 (157)
T ss_dssp HHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH---HTTTTTSCCTTTT
T ss_pred HHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---CCCCCHHHHHHHH
Confidence 444 56666666665 444478999999999999988 8999999998754
No 20
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=27.47 E-value=1.4e+02 Score=23.98 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=42.6
Q ss_pred HHHHHHHhhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhccccCCCchH---HHHHHHHHHHHHh
Q 015212 128 TRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVL---SFITDFFKEYLVD 195 (411)
Q Consensus 128 ~~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~a~---~fl~~i~~~~~~~ 195 (411)
+-+=|..|..|++. -+..|.++-++|+ ||.-|+++++.|. .|-.+=... +|+..+|..+-..
T Consensus 14 vaekL~~~~NF~ED-v~YVAEyIvlLis---Ng~s~~sivqELs--sLFd~v~~~a~~~vVqt~F~~l~~L 78 (104)
T 2v75_A 14 VAEKLAGIPNFNED-IKYVAEYIVLLIV---NGGTVESVVDELA--SLFDSVSRDTLANVVQTAFFALEAL 78 (104)
T ss_dssp HHHHHTTSTTCCSC-HHHHHHHHHHHHH---TTCCHHHHHHHHH--HHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccCcccc-HHHHHHHhheeee---CCCChHHHHHHHH--HHHccccHHHHHHHHHHHHHHHHHH
Confidence 44557788888864 6899999999999 9999999988754 233332222 4555555554433
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=27.22 E-value=36 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=20.9
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 015212 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (411)
Q Consensus 28 ~~f--~d~~~~~~~~~~~dle~~~~~l 52 (411)
-+| |++.++.|..++||+|....+|
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 467 8888888888888999888887
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.14 E-value=54 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.4
Q ss_pred chhh--HHHHHHHhhcCCCCHHHHHHHh
Q 015212 27 PAAF--SDAVVQIYLDNAGDLELIAKCI 52 (411)
Q Consensus 27 p~~f--~d~~~~~~~~~~~dle~~~~~l 52 (411)
.-+| |+++++.|..+.||++....+|
T Consensus 38 eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 38 ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567 7899999999999999988888
No 23
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.39 E-value=32 Score=23.17 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.1
Q ss_pred HhHHHHHHHhhhc
Q 015212 395 KALEPFVKWLEEA 407 (411)
Q Consensus 395 k~~~~FV~WLeEA 407 (411)
..++.||+||.+.
T Consensus 17 ~aak~fv~wL~~~ 29 (39)
T 1jrj_A 17 EAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4578899999753
No 24
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.90 E-value=1.2e+02 Score=25.88 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHHHHhhcc---ChhhhHHHHHHHHHHHhhhcCCCCCccchhh
Q 015212 107 VIYIQKILRRRPFLIKNLENVTRRFMQSLELF---EENERKKLAIFTALAFSQKLSGLPPETVFQP 169 (411)
Q Consensus 107 ~~~~~kl~rr~kyl~k~~e~~~~~~l~~l~~f---~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~ 169 (411)
..+|..|...--.=...++.-+.+++..|.-. .|.-...||.++|.++. +|.+|++.+..
T Consensus 65 ~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~---~g~l~~~~~~~ 127 (152)
T 2ion_A 65 LDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ---AGIISKQLRDL 127 (152)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTCSCHHHHHT
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHH---CCCCCHHHHHh
No 25
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=24.22 E-value=36 Score=22.10 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.4
Q ss_pred HhHHHHHHHhhhc
Q 015212 395 KALEPFVKWLEEA 407 (411)
Q Consensus 395 k~~~~FV~WLeEA 407 (411)
..++.||+||.+.
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4578899999864
No 26
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=23.83 E-value=3e+02 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhhcC
Q 015212 257 KSTLTTQIAEETEMSEVIESVKQRVKDAK 285 (411)
Q Consensus 257 ~~~L~~~l~e~~~~~~ii~eIk~~~~~~n 285 (411)
.+.+.++++++..+.+|+..|.+.+.+-+
T Consensus 65 vrGI~rMIEedr~C~DIL~QlaAVrsAL~ 93 (136)
T 4adz_A 65 IRGLQRMVDEDVYCIDILTQVSASTKALQ 93 (136)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998877754
No 27
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=23.05 E-value=2.2e+02 Score=23.99 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred ccchhhhhhhHHhhhhcCCCCCCCcccCCCCCCCceeeccCcchhhhhhHHHHHHHHHhhhhh--------hHHHhHHHH
Q 015212 57 LNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPF--------LIKNLENVT 128 (411)
Q Consensus 57 ldy~ry~~~lf~i~~~gg~l~pgg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kl~rr~ky--------l~k~~e~~~ 128 (411)
+++++|+..+-+++.. .|-.|+++ .=.+..=+++-++|..+. --..|...+
T Consensus 34 ~~~~~~~~~IV~~~~~-------------------~i~k~~~~--~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L 92 (145)
T 3d9j_A 34 IKAIKFYKHVVQSVEK-------------------FIQKCKPE--YKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNI 92 (145)
T ss_dssp HHTGGGHHHHHHHHHH-------------------HHHHSCGG--GHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHhCCcc--ceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHH
Confidence 3677777776666543 12223333 234444455666655543 234477777
Q ss_pred HHHHHHhhccChhhhHHHHHHHHHHHhhhcCCCCCccchhhhh
Q 015212 129 RRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLL 171 (411)
Q Consensus 129 ~~~l~~l~~f~~~~r~klA~~~a~~~~~~~~g~~~~~~l~~l~ 171 (411)
.+++..+-.-.+..|.|+-.+...|-- .|.-|..++..+.
T Consensus 93 ~~~f~~~~~~~~~~r~kl~rLl~iW~~---r~vF~~~~l~~l~ 132 (145)
T 3d9j_A 93 ISTFQNLYRCPGDDKSKIVRVLNLWQK---NNVFKSEIIQPLL 132 (145)
T ss_dssp HHHHHHHTSSCGGGHHHHHHHHHHHHH---TTSSCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHH
Confidence 776654444468999999999999988 8888999998753
No 28
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.66 E-value=49 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred hhh--HHHHHHHhhcCCCCHHHHHHHh
Q 015212 28 AAF--SDAVVQIYLDNAGDLELIAKCI 52 (411)
Q Consensus 28 ~~f--~d~~~~~~~~~~~dle~~~~~l 52 (411)
-+| |++.++.|..+.||.+....+|
T Consensus 27 MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 27 MGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 456 7788899999889999888887
No 29
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=21.85 E-value=44 Score=21.20 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.4
Q ss_pred HhHHHHHHHhhh
Q 015212 395 KALEPFVKWLEE 406 (411)
Q Consensus 395 k~~~~FV~WLeE 406 (411)
..++.||+||.+
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 447789999975
No 30
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=21.84 E-value=41 Score=21.38 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.7
Q ss_pred HhHHHHHHHhhh
Q 015212 395 KALEPFVKWLEE 406 (411)
Q Consensus 395 k~~~~FV~WLeE 406 (411)
+.++.||.||..
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 558889999964
No 31
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=20.81 E-value=45 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.2
Q ss_pred HHhHHHHHHHhhhcc
Q 015212 394 VKALEPFVKWLEEAE 408 (411)
Q Consensus 394 lk~~~~FV~WLeEAE 408 (411)
-..++.||.||.+..
T Consensus 16 ~~~akdFv~WL~~~k 30 (42)
T 2b4n_A 16 KIHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 355778999998654
Done!