BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015213
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBE|A Chain A, Crystal Structure Of Xenopus Laevis Replication Initiation
           Factor Mcm10 Internal Domain
 pdb|3EBE|B Chain B, Crystal Structure Of Xenopus Laevis Replication Initiation
           Factor Mcm10 Internal Domain
 pdb|3EBE|C Chain C, Crystal Structure Of Xenopus Laevis Replication Initiation
           Factor Mcm10 Internal Domain
          Length = 200

 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 85  EVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGH 143
            VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  
Sbjct: 10  HVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKIT 69

Query: 144 PKTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGP 201
           P++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G 
Sbjct: 70  PQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGT 129

Query: 202 G-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFIT 260
               LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  +
Sbjct: 130 DEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSS 189

Query: 261 TRSELK 266
            R++L+
Sbjct: 190 KRADLQ 195


>pdb|3H15|A Chain A, Crystal Structure Of Replication Initiation Factor
           Mcm10-Id Bound To Ssdna
          Length = 198

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 85  EVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSG-CWATVAVLTEKGH 143
            VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  
Sbjct: 8   HVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKIT 67

Query: 144 PKTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGP 201
           P++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G 
Sbjct: 68  PQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGT 127

Query: 202 G-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFIT 260
               LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  +
Sbjct: 128 DEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSS 187

Query: 261 TRSELK 266
            R++L+
Sbjct: 188 KRADLQ 193


>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
           From Streptococcus Agalactiae
          Length = 264

 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 29/99 (29%)

Query: 245 IYCGYHRLKASDRFI----------------TTRSE------LKGGNLRTAFRSPLNSEG 282
           IY G  R+ A +RFI                TTR+       L+G N+ T    PL  E 
Sbjct: 16  IYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVET----PL--ET 69

Query: 283 IYLFDPLT-DRTNLQKPKQPVKVLSVEGLKKALSNAGKV 320
           IY     T D  N     +   V+  EGLKKA+++AG V
Sbjct: 70  IYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYV 108


>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
           Aerophilum
 pdb|3QTG|B Chain B, Crystal Structure Of Pyruvate Kinase From Pyrobaculum
           Aerophilum
          Length = 461

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 253 KASDRFITTRSELKGGNLRTAFRSPLN-SEGIYLFDPLTDRTNLQKPKQPVKVL--SVEG 309
           KA +R +    +LKG ++R    SP+N  EG  +   L+D+++      P K    +VE 
Sbjct: 69  KAKNRPLAVIVDLKGPSIRVGSTSPINVQEGEVVKFKLSDKSDGTYIPVPNKAFFSAVEQ 128

Query: 310 LKKALSNAGKV---TTNTHSQGIRFLNEMAGPKTGNRESIKPGR 350
               L   G++    TNT S  I  + E +G  TG +  +  G+
Sbjct: 129 NDVILMLDGRLRLKVTNTGSDWIEAVAESSGVITGGKAIVVEGK 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,808,991
Number of Sequences: 62578
Number of extensions: 410342
Number of successful extensions: 613
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)