BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015213
(411 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VBD2|MCM10_MOUSE Protein MCM10 homolog OS=Mus musculus GN=Mcm10 PE=2 SV=1
Length = 885
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
VE FSGLR+R P V+ +E+S + + + +RL IK + + L W T V+ K P
Sbjct: 263 VEAFSGLRLRRPRVSSTEMSRKMAGRKLIRLPQIKEKMATENLEETDWVTFGVILRKVTP 322
Query: 145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
++++ GQ + IWKL L + T +S+FLFGD ++ WK GTV L N + K G
Sbjct: 323 QSATSGQTFSIWKLNDLHDLTQCVSLFLFGDVHKDLWKTEQGTVIGLLNANPMKPKDGLK 382
Query: 202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
LS+ +++ MG ++D G CK K+K+G C +N YC YH +
Sbjct: 383 EVCLSIDHPQKVLIMGEAMDLGACKAKKKNGEPCTQTVNLHDCEYCQYHIQAQYKKLSAK 442
Query: 262 RSELK----GGNLRTAFR 275
R++L+ GG + FR
Sbjct: 443 RTDLQSTFSGGRIPKKFR 460
>sp|Q5EAW4|MCM10_XENLA Protein MCM10 homolog OS=Xenopus laevis GN=mcm10 PE=1 SV=2
Length = 860
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 4/185 (2%)
Query: 86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
VE FSGLRIR P V+ SE+ + + + +RL+ ++N + + L W T V+ +K P
Sbjct: 238 VEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITP 297
Query: 145 KTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
++S+ G+ + IW+L L++ IS+FLFGD ++++WK GTV L N + K +G
Sbjct: 298 QSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 357
Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
LSV + +++ MG +VD G CK ++K+G C ++N YC YH + +
Sbjct: 358 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 417
Query: 262 RSELK 266
R++L+
Sbjct: 418 RADLQ 422
>sp|Q28E45|MCM10_XENTR Protein MCM10 homolog OS=Xenopus tropicalis GN=mcm10 PE=2 SV=1
Length = 845
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 108/185 (58%), Gaps = 4/185 (2%)
Query: 86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
VE FSGLR+R P V+ SE+ + + + +RL+ ++N ++ + L W T V+ +K P
Sbjct: 225 VEKFSGLRLRKPRVSSSEMERKMNGRKLIRLAQLQNKIVTEKLEDEDWVTFGVIVKKITP 284
Query: 145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
++S+ G+ + IW+L L+ + +S+FLFGD ++++WK GTV L N + K +G
Sbjct: 285 QSSNNGKTFSIWRLNDLKNLDKYVSLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 344
Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
LSV + +++ MG +VD G CK ++K+G C ++N YC YH + +
Sbjct: 345 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 404
Query: 262 RSELK 266
R++L+
Sbjct: 405 RADLQ 409
>sp|Q7L590|MCM10_HUMAN Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2
Length = 875
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
VE FSGLR+R P V+ +E++++ + + +RLS IK + + L W T V+ +K P
Sbjct: 247 VEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTP 306
Query: 145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
++ + G+ + IWKL L + T +S+FLFG+ ++ WK GTV + N + K G
Sbjct: 307 QSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSE 366
Query: 202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
LS+ +++ MG ++D G CK K+K+G C +N R YC YH +
Sbjct: 367 EVCLSIDHPQKVLIMGEALDLGTCKAKKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAK 426
Query: 262 RSELK----GGNLRTAF 274
R++L+ GG + F
Sbjct: 427 RADLQSTFSGGRIPKKF 443
>sp|Q5RHY1|MCM10_DANRE Protein MCM10 homolog OS=Danio rerio GN=mcm10 PE=3 SV=1
Length = 833
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 4/185 (2%)
Query: 86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
VE FSGLR+R P ++ ++ ++ + + +RLS + + L D L W T AV+ K P
Sbjct: 218 VEKFSGLRLRKPRLSSIDIEQKMASRKLIRLSQLPDRLARDNLEDSDWVTFAVIINKITP 277
Query: 145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
++ + G+ + IWKL L E +S+FLFG + WK GTV + N + K+ +G
Sbjct: 278 QSKNNGKTFSIWKLNDLHNLEVNVSLFLFGSVHTDLWKTDTGTVIGILNPNPMKNKEGSN 337
Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
SL+V +++ +G ++D+G CK K+K+G +C ++N + +C YH + +
Sbjct: 338 ELSLTVDHPQKVLIIGEAMDFGTCKAKKKNGDSCTQLVNLYECQFCQYHVKAQYKKMSSK 397
Query: 262 RSELK 266
R+EL+
Sbjct: 398 RAELQ 402
>sp|Q9VIE6|MCM10_DROME Protein MCM10 homolog OS=Drosophila melanogaster GN=Mcm10 PE=1 SV=2
Length = 776
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 91 GLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIG 150
GLR+ NP+V+ S L ER + + V S + + L+ W L K K + G
Sbjct: 193 GLRMINPLVSSSLLQERMTGRKPVPFSGVAYHIERGDLAKDWVIAGALVSKNPVKNTKKG 252
Query: 151 QNYCIWKLGCL--EENTISVFLFGDAYQKNWKEHAGTVFALFNCSV--RKDAKGPGFSLS 206
Y WKL L E TIS+FLF +A++ WK G A+ N ++ R+ LS
Sbjct: 253 DPYSTWKLSDLRGEVKTISLFLFKEAHKSLWKTAEGLCLAVLNPTIFERRAGSSDVACLS 312
Query: 207 VSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELK 266
+ S+ +++ +G S D G C+ +K+G C +V+N YC +H +K ++ RSEL+
Sbjct: 313 IDSSQKVMILGQSKDLGTCRATKKNGDKCTSVVNLTDCDYCIFH-VKQEYGKMSRRSELQ 371
Query: 267 GG 268
Sbjct: 372 SA 373
>sp|O42709|MCM10_SCHPO DNA replication licensing factor mcm10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mcm10 PE=1 SV=1
Length = 593
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 132 WATVAVLTEKGHPKTSSIGQNYCI-------WKLGCLEENTISVFLFGDAYQKNWKEHAG 184
+ + ++ + + G YC+ W+L C FLFG A+++ WK +G
Sbjct: 204 YVVMGIVASNSGTRETVNGNKYCMLTLTDLKWQLEC--------FLFGKAFERYWKIQSG 255
Query: 185 TVFALFNCSVRKDAKGPG---FSLSVSSASQII-KMGTSVDYGVCKGKRKDGMACNTVIN 240
TV AL N V K K P FSL + S ++ ++G S G C +RK G C ++
Sbjct: 256 TVIALLNPEVLK-PKNPDIGRFSLKLDSEYDVLLEIGRSKHLGYCSSRRKSGELCKHWLD 314
Query: 241 KRKGIYCGYHRLKASDRFITTRSEL 265
KR G C YH A R ++TR+E
Sbjct: 315 KRAGDVCEYHVDLAVQRSMSTRTEF 339
>sp|P32354|MCM10_YEAST Minichromosome maintenance protein 10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCM10 PE=1 SV=2
Length = 571
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 85 EVENFSGLRIRNPVVAPSELSERFSEIRFVRL----STIKNLLLGDTLSGCWATVAVLTE 140
E+E+FS L ++ + +L EI+ +RL + I+ + WATV +++
Sbjct: 156 ELESFSNLWVKKRYIPEDDLKRALHEIKILRLGKLFAKIRPPKFQEPEYANWATVGLISH 215
Query: 141 KGHPKTSSIGQNYCIWKLGCLE-ENTISVFLFG-DAYQKNWKEHAGTVFALFNCSV---R 195
K K +S + + + ++T+ V++FG ++ + G V A+ N V R
Sbjct: 216 KSDIKFTSSEKPVKFFMFTITDFQHTLDVYIFGKKGVERYYNLRLGDVIAILNPEVLPWR 275
Query: 196 KDAKG---PGFSLSVSSASQ-IIKMGTSVDYGVCK-GKRKDGMACNTVINKRKGIYCGYH 250
+G F+L +S + I+++G+S D G C +K C + IN C YH
Sbjct: 276 PSGRGNFIKSFNLRISHDFKCILEIGSSRDLGWCPIVNKKTHKKCGSPINISLHKCCDYH 335
Query: 251 RLKASDRFITTRSELKGG 268
R R EL GG
Sbjct: 336 REVQFRGTSAKRIELNGG 353
>sp|Q99MX0|TKTL1_MOUSE Transketolase-like protein 1 OS=Mus musculus GN=Tktl1 PE=2 SV=2
Length = 595
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 64 YEPKPVDKIKKPKLSKKS-NDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNL 122
Y + +I + K+ + S ND + +G+ + +VA +ELS+ IR + L TIK L
Sbjct: 454 YTTQETFQIGQAKVVRHSDNDKVIVIGAGVTLHEALVAAAELSKEDISIRVIDLFTIKPL 513
Query: 123 LLGDTLSGCWATVA-VLTEKGHPKTSSIGQNYC 154
+ +S AT ++T + H IG C
Sbjct: 514 DIATIISNAKATGGRIITVEDHYPEGGIGGAVC 546
>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1 SV=1
Length = 1849
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 220 VDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGG-NLRTAFRSPL 278
V Y C+ ++ + C H+L A + +L+ NLR+ + P+
Sbjct: 493 VAYHYCQADNTYTCLVPEFVHSIATLLCRSHQLAAYRDLLIREPQLQSMLNLRSCVQDPV 552
Query: 279 NSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKA 313
+ + +PLT+ N QK + ++ ++GL +A
Sbjct: 553 AAFKRGILEPLTNLRNEQKIPEEEYIILIDGLNEA 587
>sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=1 SV=2
Length = 1856
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 194 VRKDAKGPGFSLSVSSASQIIKMGTS--VDYGVCKGKRKDGMACNTVINKRKGIYCGYHR 251
V + GPG + S +K S V Y C+ ++ + C H+
Sbjct: 472 VTRTPAGPGTADSQRPREDAVKYLASKVVAYHYCQADNTYTCLVPEFVHSIAALLCRSHQ 531
Query: 252 LKASDRFITTRSELKGG-NLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGL 310
L A + +L+ +LR+ + P+ + + +PLT N QK + ++ ++GL
Sbjct: 532 LAAYRDLLIKEPQLQSMLSLRSCVQDPVAAFKRGVLEPLTSLRNEQKIPEEEYIILIDGL 591
Query: 311 KKA 313
+A
Sbjct: 592 NEA 594
>sp|Q9WTI7|MYO1C_MOUSE Unconventional myosin-Ic OS=Mus musculus GN=Myo1c PE=1 SV=2
Length = 1063
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 342 NRESIKPGRQS--TNLEKRKSPTVKPDPSLVTNQQADDKRRKT-DQGQ 386
+ E ++PG + T LEK + TVKP P +T++ AD K RK+ D+G+
Sbjct: 495 DEECLRPGEATDLTFLEKLED-TVKPHPHFLTHKLADQKTRKSLDRGE 541
>sp|B4S6R7|RSMH_PROA2 Ribosomal RNA small subunit methyltransferase H OS=Prosthecochloris
aestuarii (strain DSM 271 / SK 413) GN=rsmH PE=3 SV=1
Length = 333
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 206 SVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRL--KASDRFITTRS 263
S+S Q +++ + + GV + +DG AC + R G+ YH L + RF +S
Sbjct: 212 SLSRVFQALRIAVNDELGVLESALEDGTAC-LAPSGRMGVMS-YHSLEDRMVKRFFRDKS 269
Query: 264 ELKGGNLRTAFRSPLNSEGIYL 285
E G R PL S G L
Sbjct: 270 EDDWGPKGVGLREPLRSAGFKL 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,202,176
Number of Sequences: 539616
Number of extensions: 6686688
Number of successful extensions: 13589
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 13548
Number of HSP's gapped (non-prelim): 44
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)