Query 015213
Match_columns 411
No_of_seqs 134 out of 201
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ebe_A Protein MCM10 homolog; 100.0 2E-64 6.7E-69 471.4 16.6 188 81-268 6-197 (200)
2 2k50_A Replication factor A re 97.1 0.0034 1.2E-07 52.2 10.1 84 131-216 18-105 (115)
3 1o7i_A SSB, SSO2364, single st 97.0 0.003 1E-07 53.3 8.7 83 129-217 12-97 (119)
4 1ynx_A Replication factor-A pr 96.9 0.0046 1.6E-07 51.9 9.0 88 128-216 13-109 (114)
5 3dm3_A Replication factor A; p 96.3 0.0078 2.7E-07 50.3 6.8 75 130-209 15-93 (105)
6 2k75_A Uncharacterized protein 95.8 0.021 7.1E-07 47.6 7.0 83 130-221 14-98 (106)
7 1jmc_A Protein (replication pr 95.7 0.054 1.8E-06 50.2 10.2 87 128-215 17-112 (246)
8 3e0e_A Replication protein A; 95.5 0.036 1.2E-06 45.3 7.0 75 130-210 12-90 (97)
9 4gop_C Putative uncharacterize 94.0 0.25 8.6E-06 50.0 10.4 81 128-209 12-101 (444)
10 1qzg_A Protection of telomeres 93.6 0.072 2.5E-06 49.3 5.1 69 130-198 43-118 (187)
11 1xjv_A Protection of telomeres 93.4 0.11 3.6E-06 50.2 6.2 81 110-197 3-84 (294)
12 1jmc_A Protein (replication pr 91.0 0.7 2.4E-05 42.6 8.4 95 111-213 124-223 (246)
13 4gop_C Putative uncharacterize 90.9 1.1 3.6E-05 45.4 10.2 96 111-213 119-222 (444)
14 1jb7_A Telomere-binding protei 88.9 0.56 1.9E-05 48.9 6.4 84 110-198 35-131 (495)
15 3en2_A Probable primosomal rep 85.5 2.2 7.7E-05 35.5 7.0 62 130-191 3-75 (101)
16 2kbn_A Conserved protein; nucl 84.7 4.1 0.00014 33.7 8.3 82 130-219 15-97 (109)
17 3fhw_A Primosomal replication 79.5 8.5 0.00029 32.6 8.5 77 131-207 3-90 (115)
18 3k8a_A Putative primosomal rep 78.2 4.8 0.00016 33.3 6.4 61 130-191 8-79 (103)
19 3vdy_A SSB, single-stranded DN 74.1 9.9 0.00034 31.4 7.3 63 129-191 5-78 (116)
20 2hpi_A DNA polymerase III alph 68.9 4.1 0.00014 46.9 4.9 64 129-195 1041-1106(1220)
21 3tqy_A Single-stranded DNA-bin 66.4 9.4 0.00032 33.7 5.8 62 130-191 9-84 (158)
22 1qvc_A Single stranded DNA bin 65.8 17 0.00059 31.4 7.3 61 131-191 7-81 (145)
23 1txy_A Primosomal replication 63.9 12 0.00042 30.4 5.7 61 131-191 4-76 (104)
24 3eiv_A Single-stranded DNA-bin 62.6 19 0.00066 33.2 7.3 62 130-191 5-81 (199)
25 1z9f_A Single-strand binding p 61.3 16 0.00056 32.0 6.4 65 127-191 14-91 (153)
26 2vw9_A Single-stranded DNA bin 61.0 12 0.00041 32.0 5.3 61 131-191 4-77 (134)
27 3ulp_A Single-strand binding p 56.3 18 0.00061 30.2 5.5 93 130-222 7-123 (124)
28 3lgj_A Single-stranded DNA-bin 53.7 27 0.00094 31.1 6.6 90 129-218 23-134 (169)
29 3afp_A Single-stranded DNA-bin 49.6 49 0.0017 29.3 7.5 62 130-191 5-81 (168)
30 1eqq_A Single stranded DNA bin 49.3 16 0.00056 32.8 4.4 62 130-191 7-82 (178)
31 2fxq_A Single-strand binding p 49.2 51 0.0018 30.9 8.0 62 130-191 129-199 (264)
32 1se8_A Single-strand binding p 48.1 31 0.0011 33.4 6.4 62 130-191 130-203 (301)
33 3pgz_A Single-stranded DNA-bin 45.1 28 0.00095 32.1 5.3 89 130-218 27-137 (193)
34 1wjj_A Hypothetical protein F2 45.0 72 0.0025 27.9 7.7 82 130-217 27-121 (145)
35 2xvs_A Tetratricopeptide repea 43.7 25 0.00085 31.8 4.6 63 155-219 96-164 (166)
36 1v1q_A Primosomal replication 42.7 45 0.0015 28.9 6.0 62 130-191 20-93 (134)
37 3ull_A DNA binding protein; DN 39.1 45 0.0015 28.1 5.4 62 130-191 15-96 (132)
38 4abn_A Tetratricopeptide repea 38.5 62 0.0021 31.8 7.1 87 129-221 366-458 (474)
39 3u4v_A Telomerase-associated p 37.9 1.3E+02 0.0045 24.7 7.7 68 130-197 28-95 (117)
40 3koj_A Uncharacterized protein 36.7 87 0.003 26.0 6.6 61 131-191 13-81 (108)
41 2fxq_A Single-strand binding p 33.8 84 0.0029 29.4 6.9 61 131-191 7-80 (264)
42 4dam_A Single-stranded DNA-bin 32.7 49 0.0017 28.1 4.6 61 130-191 16-91 (128)
43 1se8_A Single-strand binding p 27.7 82 0.0028 30.4 5.8 61 131-191 7-81 (301)
44 4gop_B Putative uncharacterize 26.5 1.3E+02 0.0043 25.2 6.1 54 131-191 38-95 (136)
45 3u58_A Tetrahymena TEB1 AB; te 24.9 1.9E+02 0.0065 25.8 7.0 66 130-195 24-89 (213)
46 2pi2_A Replication protein A 3 24.8 1.1E+02 0.0038 28.7 6.0 55 131-191 73-130 (270)
47 3k7u_C MP18 RNA editing comple 24.4 1.7E+02 0.0059 25.5 6.7 60 130-191 7-81 (148)
48 3kdf_D Replication protein A 3 23.4 1.7E+02 0.0059 24.3 6.3 77 109-191 4-90 (132)
No 1
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=100.00 E-value=2e-64 Score=471.37 Aligned_cols=188 Identities=34% Similarity=0.670 Sum_probs=161.3
Q ss_pred CCCCcccCCcCceeccCccCHHHHHhHhcCCceeehhhHHhhhcCCCC-CCCeEEEEEEecCCCccccCCCccEEEEEEe
Q 015213 81 SNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTL-SGCWATVAVLTEKGHPKTSSIGQNYCIWKLG 159 (411)
Q Consensus 81 ~~~~~~Ep~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~~~~~-~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLs 159 (411)
.++..+||||||||++|+||+++|+++|++++|++|++|++.++++.+ ++||||||||++|++||++++|++|++|+|+
T Consensus 6 ~~~~~~E~~Sglrl~~r~is~~~l~~~~~~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~ 85 (200)
T 3ebe_A 6 GQQYHVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSIWRLN 85 (200)
T ss_dssp --CCCBCTTTCCBEESCSSCHHHHHHHHTTCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CCEEEEEE
T ss_pred CCcccccCccCcEEecccCCHHHHHHHhcCCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeEEEEEEE
Confidence 356789999999999999999999999999999999999999988776 4799999999999999999999999999999
Q ss_pred eCCC--CeEEEEEechHHHhhcCcccccEEEEECceeccCCC-CCcceEEecCCccEEEeeeeccCccceeeecCCcccc
Q 015213 160 CLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAK-GPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACN 236 (411)
Q Consensus 160 DL~~--~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~-g~~fsLsV~s~d~ILeIG~S~DlG~CKa~kKdG~~Ct 236 (411)
||.+ ++|+|||||+||++|||+++|+|||||||+||+++. .+.|+|+|+++++||+||.|+|||+|++++|||++|+
T Consensus 86 DL~~~~~~V~lfLFg~a~~~~~k~~~G~ViaiLNP~i~~~~~~~~~~sLsv~~~~~Il~IG~a~DlG~Ck~~kkdG~~C~ 165 (200)
T 3ebe_A 86 DLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCT 165 (200)
T ss_dssp CSSSTTCCEEEEECHHHHHHHTTCCTTEEEEEESCEECCCCTTCCCEEEECSSGGGEEEEEEETTEEECSSBCTTSCBCC
T ss_pred ecCCCCcEEEEEEechHHHHhcCcCCceEEEEECCEEccCCCCCcceEEEECCcccEEEEEecccCcEeeCEecCCCcCC
Confidence 9986 789999999999999999999999999999998764 4689999999999999999999999999999999999
Q ss_pred cccccccccccccchHHHhhhhccCCceecCC
Q 015213 237 TVINKRKGIYCGYHRLKASDRFITTRSELKGG 268 (411)
Q Consensus 237 ~~VNk~~~eyC~yHv~~a~rK~~s~R~EL~gg 268 (411)
+|||+++|+||+||++.+++|.+++||||||+
T Consensus 166 ~~Vn~~~~eyC~yHv~~~~~k~~s~R~El~~s 197 (200)
T 3ebe_A 166 QMVNLNDCEYCQYHVQAQYKKVSSKRADLQSS 197 (200)
T ss_dssp CEEETTTCSSCHHHHHHHHTC-----------
T ss_pred CcEeCCcCcccHhHHHHHHHHhhcCChhhccc
Confidence 99999999999999999999999999999986
No 2
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.10 E-value=0.0034 Score=52.15 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=67.5
Q ss_pred CeEEEEEEecCCCcc--ccCCC--ccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEE
Q 015213 131 CWATVAVLTEKGHPK--TSSIG--QNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLS 206 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK--~ss~G--k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLs 206 (411)
...++|+|.++++++ .+++| ++|....|.|=. .+|.+-+|++..+.+..+.+|++|+|-|..+...- .+...|+
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T-G~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~f-~g~~qL~ 95 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT-GELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGF-GGRKEAH 95 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT-EEEEEEEETTGGGGGGTCCTTSEEEEEEEEECCCS-SSSCEEE
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC-CeEEEEEeCchhhhhhcCCCCCEEEEEeeEEcccc-CCeEEEE
Confidence 346789999998888 67788 789999999975 59999999998777778999999999998875421 1358888
Q ss_pred ecCCccEEEe
Q 015213 207 VSSASQIIKM 216 (411)
Q Consensus 207 V~s~d~ILeI 216 (411)
+.....|.+.
T Consensus 96 ~~~~~~i~~~ 105 (115)
T 2k50_A 96 LMPRSTVEVL 105 (115)
T ss_dssp ECTTCCEEEE
T ss_pred ECCCceEEEC
Confidence 8887766554
No 3
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=96.97 E-value=0.003 Score=53.32 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCCeEEEEEEecCCCcc--ccCCCc-cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213 129 SGCWATVAVLTEKGHPK--TSSIGQ-NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL 205 (411)
Q Consensus 129 ~~dWVtvGVIv~Ks~pK--~ss~Gk-~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL 205 (411)
...|-++|+|.++++++ .+++|+ .|....|.|=. .+|.+-||++..+ .+.+|+||.|-|..+...+ +...|
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~T-G~I~~tlW~~~~~---~~~~G~vv~i~~g~v~~~~--g~~qL 85 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDET-GRVKLTLWGKHAG---SIKEGQVVKIENAWTTAFK--GQVQL 85 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETT-EEEEEEEEGGGTT---CCCTTCEEEEEEEEEEEET--TEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCC-CEEEEEEECChhh---cCCCCCEEEEEeEEEEEeC--CEEEE
Confidence 34799999999999877 678896 89999999976 4699999998654 3799999999999996653 35899
Q ss_pred EecCCccEEEee
Q 015213 206 SVSSASQIIKMG 217 (411)
Q Consensus 206 sV~s~d~ILeIG 217 (411)
+|.....|.+++
T Consensus 86 ~i~~~~~i~~~~ 97 (119)
T 1o7i_A 86 NAGSKTKIAEAS 97 (119)
T ss_dssp EECTTCEEEECC
T ss_pred EECCCEEEEEcC
Confidence 999888888776
No 4
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0046 Score=51.92 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=66.9
Q ss_pred CCCCeEEEEEEecCCCccccC--CC-ccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213 128 LSGCWATVAVLTEKGHPKTSS--IG-QNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK---- 199 (411)
Q Consensus 128 ~~~dWVtvGVIv~Ks~pK~ss--~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~---- 199 (411)
...+|.+.|-|+.|+++|.=. +| .+..-+.|.|=.+ ++.+.+|++..++|+ .+++|.|+.|-|..|.+.+.
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~ 91 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTN 91 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSS
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCccc
Confidence 456899999999999876622 22 2355566888877 999999999999888 58999999999999987542
Q ss_pred -CCcceEEecCCccEEEe
Q 015213 200 -GPGFSLSVSSASQIIKM 216 (411)
Q Consensus 200 -g~~fsLsV~s~d~ILeI 216 (411)
.+.+.|.+.....|-++
T Consensus 92 ~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 92 LTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp SSSCEEEEECSSCEEEES
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 24677777765555443
No 5
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0078 Score=50.29 Aligned_cols=75 Identities=11% Similarity=-0.017 Sum_probs=56.7
Q ss_pred CCeEEEEEEecCCCccc--cCCCccEE--EEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213 130 GCWATVAVLTEKGHPKT--SSIGQNYC--IWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL 205 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~--ss~Gk~Y~--iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL 205 (411)
.+|-++|+|.++++++. +++|+... -..|.|=. ..|.+-||++.... .+.+|++|+| |..+..... ++..|
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~T-G~IrvtlW~~~a~~--~l~~Gdvv~i-~g~vk~~~~-g~~eL 89 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDET-GSIRVTLWDNLTDI--DVGRGDYVRV-RGYIREGYY-GGLEC 89 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETT-EEEEEEEEGGGGGS--CCCTTCEEEE-EEEEEECTT-SSEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECccccc--ccCCCCEEEE-EEEEEEccC-CCEEE
Confidence 68999999999998875 45786544 45566643 48999999997655 8999999999 998866432 24666
Q ss_pred EecC
Q 015213 206 SVSS 209 (411)
Q Consensus 206 sV~s 209 (411)
++.+
T Consensus 90 ~~g~ 93 (105)
T 3dm3_A 90 TANY 93 (105)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 6654
No 6
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=95.82 E-value=0.021 Score=47.57 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCeEEEEEEecCCCccccCCCcc--EEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEe
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQN--YCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSV 207 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV 207 (411)
.++.++|.|.++++++.+++|++ |....|.|=. ..|.+-||++. +.+|++|-|-|..+...+ ....|.|
T Consensus 14 ~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeT-G~I~~tlW~~~------l~~Gdvv~i~ng~v~~~~--g~~~L~v 84 (106)
T 2k75_A 14 PYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDT-ARIRISSFGKQ------LQDSDVVRIDNARVAQFN--GYLSLSV 84 (106)
T ss_dssp SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSS-CEEEEEEESSC------CCTTEEEEEEEEEEEEET--TEEEEEE
T ss_pred ceEEEEEEEEEccccccccCCCeeEEEEEEEEcCC-CeEEEEEEcCc------cCCCCEEEEEeeEEeEEC--CEEEEEE
Confidence 34788999999998887778874 9999999965 58999999987 999999999999996553 3589999
Q ss_pred cCCccEEEeeeecc
Q 015213 208 SSASQIIKMGTSVD 221 (411)
Q Consensus 208 ~s~d~ILeIG~S~D 221 (411)
.....|-+||.-.-
T Consensus 85 ~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 85 GDSSRIESVNVNIP 98 (106)
T ss_dssp CTTSEEEECCSCCC
T ss_pred CCcEEEEECCCCCc
Confidence 99889988885433
No 7
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=95.72 E-value=0.054 Score=50.15 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCCCeEEEEEEecCCCcccc--CCC-ccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213 128 LSGCWATVAVLTEKGHPKTS--SIG-QNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK---- 199 (411)
Q Consensus 128 ~~~dWVtvGVIv~Ks~pK~s--s~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~---- 199 (411)
...+|.+.|-|+.|++.|.= .+| ..+.-+.|.|=.+ .|.+.+|++..++|+ .+++|.|+.|-|..|.+.+.
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~~~v~~~~~~y~~ 95 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTA 95 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCC
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECCCEEEEcccCccc
Confidence 45699999999999998752 222 2355667888777 999999999988887 48999999999999976531
Q ss_pred -CCcceEEecCCccEEE
Q 015213 200 -GPGFSLSVSSASQIIK 215 (411)
Q Consensus 200 -g~~fsLsV~s~d~ILe 215 (411)
.+.+.|.+.....|.+
T Consensus 96 ~~~~~ei~~~~~T~I~~ 112 (246)
T 1jmc_A 96 VKNDYEMTFNNETSVMP 112 (246)
T ss_dssp CCCSEEEECCTTCEEEE
T ss_pred CCCCEEEEEcCCcEEEE
Confidence 2456666665444444
No 8
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.45 E-value=0.036 Score=45.32 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=55.4
Q ss_pred CCeEEEEEEecCCCccc--cCCCc--cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213 130 GCWATVAVLTEKGHPKT--SSIGQ--NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL 205 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~--ss~Gk--~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL 205 (411)
.+|.++|+|.++++++. .++|+ .+.-..|.|=. .+|.+-||++..+. .+.+|++|.| |..+..... ...|
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeT-G~I~~tlW~~~~~~--~i~~Gdvv~i-~g~v~~~~~--~~el 85 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDT-GSIRGTLWNELADF--EVKKGDIAEV-SGYVKQGYS--GLEI 85 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETT-EEEEEEEEGGGGGC--CCCTTCEEEE-EEEEEEC----CEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECCcccc--ccCCCCEEEE-EEEEEEcCC--eEEE
Confidence 68999999999998877 44674 57888888854 59999999997655 8999999999 988755422 4556
Q ss_pred EecCC
Q 015213 206 SVSSA 210 (411)
Q Consensus 206 sV~s~ 210 (411)
.+.+.
T Consensus 86 ~~g~~ 90 (97)
T 3e0e_A 86 SVDNI 90 (97)
T ss_dssp EEEEE
T ss_pred EECCC
Confidence 65543
No 9
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.99 E-value=0.25 Score=49.98 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCCCeEEEEEEecCCCcccc--CCC-ccEEEEEEeeCCCCeEEEEEechHHHhhcC-cccccEEEEECceeccCCC----
Q 015213 128 LSGCWATVAVLTEKGHPKTS--SIG-QNYCIWKLGCLEENTISVFLFGDAYQKNWK-EHAGTVFALFNCSVRKDAK---- 199 (411)
Q Consensus 128 ~~~dWVtvGVIv~Ks~pK~s--s~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wK-l~~GtVIAILNP~Im~~~~---- 199 (411)
...+|.+.|-|+.|++.|.= .+| ..+.-+.|.|=.+ .|.+.+|++..++|+. +++|.|+.|-|..|.+.+.
T Consensus 12 ~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~ 90 (444)
T 4gop_C 12 YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSN 90 (444)
T ss_dssp TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCS
T ss_pred CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCcccc
Confidence 35799999999999998863 222 2355566778655 9999999999999885 8999999999999976432
Q ss_pred -CCcceEEecC
Q 015213 200 -GPGFSLSVSS 209 (411)
Q Consensus 200 -g~~fsLsV~s 209 (411)
.+.+-|.++.
T Consensus 91 ~~~~~ei~~~~ 101 (444)
T 4gop_C 91 LQNEYEITFEN 101 (444)
T ss_dssp CCCSEEEEECT
T ss_pred CCCCEEEEEcC
Confidence 2345555543
No 10
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=93.64 E-value=0.072 Score=49.25 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=57.4
Q ss_pred CCeEEEEEEecCCCccccCCCc--cEEEEEEeeCC----CCeEEEEEechHHHhhcCc-ccccEEEEECceeccCC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQ--NYCIWKLGCLE----ENTISVFLFGDAYQKNWKE-HAGTVFALFNCSVRKDA 198 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk--~Y~iwkLsDL~----~~~VsLfLFG~A~ek~wKl-~~GtVIAILNP~Im~~~ 198 (411)
+---++|||++-..|+.+..|+ -.+.++|.|-. ...|.+.+|..-.+.+=.+ .+||||.|-|-.|...+
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~rvkiq~~~ 118 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYR 118 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEET
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEEEEEEEEC
Confidence 4567999999999999996666 46889999975 3479999999877777777 99999999999997654
No 11
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=93.44 E-value=0.11 Score=50.16 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=62.6
Q ss_pred CCceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCc-ccccEEE
Q 015213 110 EIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKE-HAGTVFA 188 (411)
Q Consensus 110 ~~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl-~~GtVIA 188 (411)
...|+.|++|. ....--++|||++.+.|+.++...-++.++|.|-....|.+.+|..-.+.+=.+ .+|+||.
T Consensus 3 ~y~y~~l~~l~-------~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~ 75 (294)
T 1xjv_A 3 NYIYTPLNQLK-------GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVR 75 (294)
T ss_dssp CCCCCCGGGCC-------SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEE
T ss_pred cceEEEHHHhh-------CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEE
Confidence 35566676541 234567999999999998885445578899999765679999999766666667 9999999
Q ss_pred EECceeccC
Q 015213 189 LFNCSVRKD 197 (411)
Q Consensus 189 ILNP~Im~~ 197 (411)
|=|-.|...
T Consensus 76 l~~vki~~~ 84 (294)
T 1xjv_A 76 FHRLKIQVY 84 (294)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998754
No 12
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=91.02 E-value=0.7 Score=42.56 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=66.0
Q ss_pred CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCcccc---CCCcc--EEEEEEeeCCCCeEEEEEechHHHhhcCccccc
Q 015213 111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTS---SIGQN--YCIWKLGCLEENTISVFLFGDAYQKNWKEHAGT 185 (411)
Q Consensus 111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~s---s~Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~Gt 185 (411)
..|+++.+|.. +.. ...-=++|+|++-++.+.- ++|+. ...+.|.|-.+..|.+-|||+..+.+- ...|.
T Consensus 124 ~~f~~i~~i~~-~~~---~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~-~~~~~ 198 (246)
T 1jmc_A 124 FDFTGIDDLEN-KSK---DSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFD-GSRQP 198 (246)
T ss_dssp CCBCCGGGGGG-SCT---TCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCC-CTTCC
T ss_pred eeeEEHHHHhc-ccC---CCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcc-cCCCC
Confidence 35777777765 111 1223489999999987652 24654 556777888767899999999665543 68999
Q ss_pred EEEEECceeccCCCCCcceEEecCCccE
Q 015213 186 VFALFNCSVRKDAKGPGFSLSVSSASQI 213 (411)
Q Consensus 186 VIAILNP~Im~~~~g~~fsLsV~s~d~I 213 (411)
||+|-+..|... ++.+|++....+|
T Consensus 199 vv~i~~~~v~~f---~g~~ls~~~~s~i 223 (246)
T 1jmc_A 199 VLAIKGARVSDF---GGRSLSVLSSSTI 223 (246)
T ss_dssp EEEEEEEEEECT---TSSEEECCSSCEE
T ss_pred EEEEEEEEEEec---CCeEEEecCcceE
Confidence 999999999655 2467777554444
No 13
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.88 E-value=1.1 Score=45.39 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=66.5
Q ss_pred CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccc--cC-CCc--cEEEEEEeeCCCCeEEEEEechHHHhhc---Ccc
Q 015213 111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKT--SS-IGQ--NYCIWKLGCLEENTISVFLFGDAYQKNW---KEH 182 (411)
Q Consensus 111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~--ss-~Gk--~Y~iwkLsDL~~~~VsLfLFG~A~ek~w---Kl~ 182 (411)
..|++|.+|... .. ...-=++|+|.+-++.+. ++ +|+ ....+.|.|..+..|.+-|||+-.+.+- ...
T Consensus 119 ~~f~~i~~i~~~-~~---~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 119 YEFVRINELESV-EA---NQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCBCCGGGGGGS-CS---SCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSS
T ss_pred ecccCHHHHhcc-CC---CCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccC
Confidence 457788887763 11 122338999999998765 22 465 4667788888777999999999655433 378
Q ss_pred cccEEEEECceeccCCCCCcceEEecCCccE
Q 015213 183 AGTVFALFNCSVRKDAKGPGFSLSVSSASQI 213 (411)
Q Consensus 183 ~GtVIAILNP~Im~~~~g~~fsLsV~s~d~I 213 (411)
.|.||+|-+..|...+ | .+|++.+...|
T Consensus 195 ~~~VV~i~~~kV~~f~-G--~~ls~~~~s~i 222 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFG-G--RSLSMFSSSTM 222 (444)
T ss_dssp SCCEEEEESCEEECTT-S--SEEECCTTCEE
T ss_pred CCCEEEEEeEEEeecC-C--eEEeccccceE
Confidence 8999999999997542 3 46766544444
No 14
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=88.92 E-value=0.56 Score=48.94 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCC-------eE-----EEEEechHHHh
Q 015213 110 EIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEEN-------TI-----SVFLFGDAYQK 177 (411)
Q Consensus 110 ~~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~-------~V-----sLfLFG~A~ek 177 (411)
...|+.|.++.. ...+.--++|||++-+.|+.+....-.+.++|.|-.-. .+ .|.+|..-.+.
T Consensus 35 ~y~y~~L~~a~~-----~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~ 109 (495)
T 1jb7_A 35 KYEYVELAKASL-----TSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED 109 (495)
T ss_dssp -CCBCCTTTSCS-----SCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG
T ss_pred CCccEEHHHHHh-----ccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHH
Confidence 345555543331 13456689999999999998865555688999995421 25 99999987777
Q ss_pred hcCc-ccccEEEEECceeccCC
Q 015213 178 NWKE-HAGTVFALFNCSVRKDA 198 (411)
Q Consensus 178 ~wKl-~~GtVIAILNP~Im~~~ 198 (411)
+=.+ .+||||.|-|-.|...+
T Consensus 110 LP~V~~~GDII~LhrvkIq~~n 131 (495)
T 1jb7_A 110 LPIIHRAGDIIRVHRATLRLYN 131 (495)
T ss_dssp SCCCCEETCEEEEEEEEEEEET
T ss_pred CCCCCCCCCEEEEEEEEEEEEC
Confidence 7777 79999999999997654
No 15
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=85.50 E-value=2.2 Score=35.45 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=50.1
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC---C--C-----Ce-EEEEEechHHHhhcCcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL---E--E-----NT-ISVFLFGDAYQKNWKEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL---~--~-----~~-VsLfLFG~A~ek~wKl~~GtVIAILN 191 (411)
...+.+|-|+...+.|.|.+|.+.+-+.|--= . + .. +.+.+||+..+..+++..|+.|+|--
T Consensus 3 N~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~VeG 75 (101)
T 3en2_A 3 NRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVG 75 (101)
T ss_dssp CCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEEE
T ss_pred CEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEEE
Confidence 35789999999999999999999888877421 1 1 13 88899999888888899999998854
No 16
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=84.70 E-value=4.1 Score=33.66 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCe-EEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEec
Q 015213 130 GCW-ATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVS 208 (411)
Q Consensus 130 ~dW-VtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV~ 208 (411)
+.| -++|.|.+...+ ++|+.|..+.|.|=. ..|.+-+|++. ..-.+.+|++|-|-|..+...+ ..+.|.|.
T Consensus 15 ~~~v~v~~~V~~~~~~---~~~~~~~~~~l~DeT-G~I~~t~W~~~--~~~~~~~G~~V~i~n~~v~~~~--G~~~L~v~ 86 (109)
T 2kbn_A 15 GQWANLKAKVIQLWEN---THESISQVGLLGDET-GIIKFTIWKNA--ELPLLEQGESYLLRSVVVGEYN--DRFQVQVN 86 (109)
T ss_dssp TCEEEEEEEEEEEEEC---CCSSEEEEEEEECTT-CCEEEEEEGGG--CCCCCCTTCEEEEEEEEEEEET--TEEEEEEC
T ss_pred CCcEEEEEEEEEeEcC---CCCeEEEEEEEECCC-CeEEEEEECcc--cccccCCCCEEEEEEEEEEEEC--CEEEEEEC
Confidence 455 467888888764 357889999999986 58999999954 2337899999999999997764 35888888
Q ss_pred CCccEEEeeee
Q 015213 209 SASQIIKMGTS 219 (411)
Q Consensus 209 s~d~ILeIG~S 219 (411)
....|-++...
T Consensus 87 ~~~~I~~~~~~ 97 (109)
T 2kbn_A 87 KNSSIEKLSEP 97 (109)
T ss_dssp SSSEEEECSSC
T ss_pred CceEEEECCCc
Confidence 87777666543
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=79.49 E-value=8.5 Score=32.59 Aligned_cols=77 Identities=17% Similarity=0.057 Sum_probs=54.2
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEee---CCC-------Ce-EEEEEechHHHhhcCcccccEEEEECceeccCCC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGC---LEE-------NT-ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAK 199 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsD---L~~-------~~-VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~ 199 (411)
..+.+|-|+...+.|+|.+|...+-+.|-- ..+ +. +.+.+||+..+..+.+..|+.|+|--==-.....
T Consensus 3 kviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~~ 82 (115)
T 3fhw_A 3 TLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPARKD 82 (115)
T ss_dssp EEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCTTCEEEEEEEEEESSTT
T ss_pred EEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCCCCEEEEEEEEEECCCC
Confidence 467899999999999999999988888742 111 12 8899999977766779999999886432223333
Q ss_pred CCcceEEe
Q 015213 200 GPGFSLSV 207 (411)
Q Consensus 200 g~~fsLsV 207 (411)
|...-|.+
T Consensus 83 G~kl~l~a 90 (115)
T 3fhw_A 83 SVKVKLHL 90 (115)
T ss_dssp CSSEEEEE
T ss_pred CCEEEEEE
Confidence 43333333
No 18
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=78.24 E-value=4.8 Score=33.31 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC-----CC------CeEEEEEechHHHhhcCcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL-----EE------NTISVFLFGDAYQKNWKEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL-----~~------~~VsLfLFG~A~ek~wKl~~GtVIAILN 191 (411)
...+++|-|+...+.|.+.+|.+.+-+.|-=- .+ +.+.+.+||+..+ .+++..|+.|+|--
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~l~KG~~v~veG 79 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQYRQGDCATVEG 79 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HSTTCTTCEEEEEE
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhccCCCCEEEEEE
Confidence 56789999999999999999998887777421 11 2388899999888 88899999998854
No 19
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=74.14 E-value=9.9 Score=31.36 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=49.1
Q ss_pred CCCeEEEEEEecCCCccccCCCccEEEEEEeeCC------C----CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 129 SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE------E----NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 129 ~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~------~----~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
-....++|-|+...+.+.+.+|..|+.+.|.--. + ..+.+.+||+..+...+ +..|+.|.|--
T Consensus 5 mN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 5 FNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEE
Confidence 3567899999999999999999999999884321 1 25999999986655444 89999998864
No 20
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=68.90 E-value=4.1 Score=46.93 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCCeE-EEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCc-ccccEEEEECceec
Q 015213 129 SGCWA-TVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKE-HAGTVFALFNCSVR 195 (411)
Q Consensus 129 ~~dWV-tvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl-~~GtVIAILNP~Im 195 (411)
.+..| +.|+|+..- .+.|++|+.+.+.+|.|.. ..+.+.+|.+.|++|-.+ .+|.++.| .-.|-
T Consensus 1041 ~g~~v~v~G~v~~~~-~~~Tk~G~~maf~tleD~t-g~~evvvf~~~~~~~~~~l~~~~~~~v-~G~v~ 1106 (1220)
T 2hpi_A 1041 GKPKVLLSGMVEEVV-RKPTRSGGMMARFTLSDET-GALEVVVFGRAYEGVSPKLKEDIPLLV-LAEVE 1106 (1220)
T ss_dssp SSCEEEEEEEECCC-------------CEEEEETT-EEEEEC-------------CTTCEEEE-EEEEC
T ss_pred CCCeEEEEEEEEEEE-EeecCCCCeEEEEEEEECC-CCEEEEEcHHHHHHHHHHhccCCEEEE-EEEEE
Confidence 35544 556666654 5667899999999999997 579999999999998854 66666655 44553
No 21
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=66.38 E-value=9.4 Score=33.66 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=47.6
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC-------CC------CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL-------EE------NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL-------~~------~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
...+++|-|+...+.|.+.+|+.|+.+.|.-- .+ ..+.+.+||+..+...+ +..|+.|.|--
T Consensus 9 N~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 9 NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp EEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEE
Confidence 35789999999999999999999998888321 11 24789999986555444 89999998854
No 22
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=65.82 E-value=17 Score=31.36 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeCC-------------CCeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE-------------ENTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~-------------~~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
..+++|-|+...+.|.+.+|..|+.+.|.--. ...+.+.+||+..+..-+ +..|+.|.|--
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 46789999999999999999999999994211 126999999986555443 88999998853
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=63.89 E-value=12 Score=30.43 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=46.3
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeCC----CCe-------EEEEEechHHHhhc-CcccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE----ENT-------ISVFLFGDAYQKNW-KEHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~----~~~-------VsLfLFG~A~ek~w-Kl~~GtVIAILN 191 (411)
..+++|-|+...+.|.+.+|..++.+.|--=. ... +.+.+||...+..- .+..|+.|+|--
T Consensus 4 ~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEE
Confidence 46789999999999999999998888873211 123 99999998554432 489999998754
No 24
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=62.65 E-value=19 Score=33.24 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=48.5
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC----C----------CCeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL----E----------ENTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL----~----------~~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
...+++|-|+...+.|.+.+|+.|+.+.|--- + ...+.|.+|++..+...+ +..|+.|.|--
T Consensus 5 N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 5 TVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp CEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 35778999999999999999999999988532 1 125899999986655443 89999998853
No 25
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=61.29 E-value=16 Score=32.03 Aligned_cols=65 Identities=8% Similarity=0.093 Sum_probs=47.9
Q ss_pred CCCCCeEEEEEEecCCCccccCCCccEEEEEEe-e---CC----C----CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 127 TLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLG-C---LE----E----NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 127 ~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLs-D---L~----~----~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
++-....++|-|+...+.|.+.+|+.|+.+.|. + .. + ..+.+.+||...+..-+ +..|+.|+|--
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEE
Confidence 356788999999999999999999999999884 2 11 1 24889999985554443 89999998864
No 26
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=60.96 E-value=12 Score=31.96 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeC------CC------CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCL------EE------NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL------~~------~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
..+++|-|+...+.|.+.+|..++.+.|.-- .+ ..+.+.+||...+..-+ +..|+.|.|--
T Consensus 4 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 77 (134)
T 2vw9_A 4 KVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEG 77 (134)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEE
Confidence 4678999999999999999999988888311 11 25899999986555544 89999998864
No 27
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=56.33 E-value=18 Score=30.25 Aligned_cols=93 Identities=8% Similarity=0.031 Sum_probs=58.8
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC------C-C------CeEEEEEec-hHHHhhcC-cccccEEEEEC---
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL------E-E------NTISVFLFG-DAYQKNWK-EHAGTVFALFN--- 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL------~-~------~~VsLfLFG-~A~ek~wK-l~~GtVIAILN--- 191 (411)
....++|-|+...+.|.+.+|+.|+.+.|.-- . + ..+.+.+|| ...+...+ +..|+.|+|--
T Consensus 7 N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~ 86 (124)
T 3ulp_A 7 NKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQGSLH 86 (124)
T ss_dssp EEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred eEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEEEEE
Confidence 35788999999999999999999999888321 1 1 248999999 55554444 89999998853
Q ss_pred ceeccCC--CCC---cceEEecCC-ccEEEeeeeccC
Q 015213 192 CSVRKDA--KGP---GFSLSVSSA-SQIIKMGTSVDY 222 (411)
Q Consensus 192 P~Im~~~--~g~---~fsLsV~s~-d~ILeIG~S~Dl 222 (411)
..-..++ +|. ...+.+++. ..|..|+.-.|+
T Consensus 87 ~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~~ 123 (124)
T 3ulp_A 87 TRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRNF 123 (124)
T ss_dssp EEEECC----CCCEEEEEEEECTTTCEEEECC-----
T ss_pred eEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCCC
Confidence 2223444 453 234555543 477777765554
No 28
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=53.75 E-value=27 Score=31.11 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCeEEEEEEecCCCccccCCCccEEEEEEeeCC-------C------CeEEEEEech-HHHhhcC-cccccEEEEECce
Q 015213 129 SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE-------E------NTISVFLFGD-AYQKNWK-EHAGTVFALFNCS 193 (411)
Q Consensus 129 ~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~-------~------~~VsLfLFG~-A~ek~wK-l~~GtVIAILNP~ 193 (411)
-...+++|-|+...+.|.+.+|+.|+.+.|.--. + ..+.+.+||+ ..+...+ +..|+.|.|--=-
T Consensus 23 mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL 102 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGKL 102 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3578899999999999999999999998883221 1 2588999999 5555444 8999999886421
Q ss_pred e---ccCCCCC---cceEEecC-CccEEEeee
Q 015213 194 V---RKDAKGP---GFSLSVSS-ASQIIKMGT 218 (411)
Q Consensus 194 I---m~~~~g~---~fsLsV~s-~d~ILeIG~ 218 (411)
- +.+++|. ...+.++. .+.|-.|+.
T Consensus 103 ~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~ 134 (169)
T 3lgj_A 103 QTRKWQDKNGHDRYTTEIVLPQYKGELHLLDA 134 (169)
T ss_dssp EEECC--------CEEEEEECTTCCEEEEECC
T ss_pred EEEEEECCCCCEEEEEEEEEEeccCcEEEccC
Confidence 1 2233342 33455554 356666654
No 29
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=49.60 E-value=49 Score=29.30 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=48.0
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeCC--------------CCeEEEEEechHHHhhc-CcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE--------------ENTISVFLFGDAYQKNW-KEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~--------------~~~VsLfLFG~A~ek~w-Kl~~GtVIAILN 191 (411)
...+++|-|+..-+.|.+.+|+.|+.+.|---. ...+.|.+||...+..- .+..|+.|.|--
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEE
Confidence 346789999999999999999999999985210 12589999998655433 388999998864
No 30
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=49.32 E-value=16 Score=32.81 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=47.0
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEe-e--CC----C------CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLG-C--LE----E------NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLs-D--L~----~------~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
...+++|-|+..-+.|.+.+|+.++.+.|. + .. + ..+.|.+||+..+..-+ +..|+.|.|--
T Consensus 7 N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 357789999999999999999988888773 1 11 1 25899999986554443 89999998854
No 31
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=49.18 E-value=51 Score=30.86 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=48.7
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeCC---------CCeEEEEEechHHHhhcCcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE---------ENTISVFLFGDAYQKNWKEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~---------~~~VsLfLFG~A~ek~wKl~~GtVIAILN 191 (411)
...+++|-|+...+.|.+.+|+.|+.+.|.--. ...+.+.+||...+..-.+..|+.|.|--
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G 199 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIG 199 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEE
Confidence 457799999999999999999999999983221 12699999998555433789999998864
No 32
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=48.15 E-value=31 Score=33.45 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=49.6
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC------CC------CeEEEEEechHHHhhcCcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL------EE------NTISVFLFGDAYQKNWKEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL------~~------~~VsLfLFG~A~ek~wKl~~GtVIAILN 191 (411)
...+++|-|+..-+.|.+.+|+.|+.+.|.-- .+ ..+.+.+||...+...++..|+.|.|--
T Consensus 130 N~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l~KG~~V~V~G 203 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMG 203 (301)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEEEEE
T ss_pred eEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhcCCCCEEEEEE
Confidence 35779999999999999999999999888411 11 2589999999777666799999999853
No 33
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=45.08 E-value=28 Score=32.05 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC--------CC-----CeEEEEEech-HHHhhcC-cccccEEEEEC---
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL--------EE-----NTISVFLFGD-AYQKNWK-EHAGTVFALFN--- 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL--------~~-----~~VsLfLFG~-A~ek~wK-l~~GtVIAILN--- 191 (411)
...+++|-|+...+.|.+.+|+.|+.+.|.-- .+ ..+.|.+||+ ..+...+ +..|+.|+|--
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~ 106 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQ 106 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEE
Confidence 45789999999999999999999999888421 11 2488999997 4444433 89999998853
Q ss_pred ceeccCCCCC---cceEEecCC-ccEEEeee
Q 015213 192 CSVRKDAKGP---GFSLSVSSA-SQIIKMGT 218 (411)
Q Consensus 192 P~Im~~~~g~---~fsLsV~s~-d~ILeIG~ 218 (411)
..-+.+++|. ...+.+++. ..|..|+.
T Consensus 107 trswedkdG~kr~~tEVva~~~~~~i~fL~s 137 (193)
T 3pgz_A 107 TRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137 (193)
T ss_dssp EEEEECTTSCEEEEEEEEECTTCCEEEECC-
T ss_pred EEEeECCCCCEEEEEEEEEEeccCceEECcC
Confidence 2223344443 234555554 35555553
No 34
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=45.04 E-value=72 Score=27.92 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=59.6
Q ss_pred CCeEEEEEEecCCCcc---ccC--CCc--------cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceecc
Q 015213 130 GCWATVAVLTEKGHPK---TSS--IGQ--------NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRK 196 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK---~ss--~Gk--------~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~ 196 (411)
.+.-+.|.|++...++ ... .|. ...-..|+|=- ..|.+-|+++..+. +.+|++|-|-|..+..
T Consensus 27 ~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeT-G~I~ftlW~e~~~~---l~~Gd~v~i~na~v~~ 102 (145)
T 1wjj_A 27 TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDET-GCILFTARNDQVDL---MKPGATVILRNSRIDM 102 (145)
T ss_dssp CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSS-CEEEEEECTTHHHH---TCTTCEEEEEEEEEEE
T ss_pred CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCC-cEEEEEEecCCcCc---CCCCCEEEEeccEEEe
Confidence 3456788888887765 221 342 46667888864 68999999984432 6799999999999965
Q ss_pred CCCCCcceEEecCCccEEEee
Q 015213 197 DAKGPGFSLSVSSASQIIKMG 217 (411)
Q Consensus 197 ~~~g~~fsLsV~s~d~ILeIG 217 (411)
.+ ....|.+.....|-+++
T Consensus 103 ~~--G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 103 FK--GTMRLGVDKWGRIEATG 121 (145)
T ss_dssp ET--TEEEEEECTTCCBCCCS
T ss_pred EC--CEEEEEECCCEEEEECC
Confidence 43 35788888888887776
No 35
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=43.71 E-value=25 Score=31.81 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=45.6
Q ss_pred EEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCC---CCC--cc-eEEecCCccEEEeeee
Q 015213 155 IWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDA---KGP--GF-SLSVSSASQIIKMGTS 219 (411)
Q Consensus 155 iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~---~g~--~f-sLsV~s~d~ILeIG~S 219 (411)
.+=+.|-.+...-|.+++= .+.|-+.+||.|+|..|.++.-. .++ .| +++|+++.+|++=|+.
T Consensus 96 ~f~~vD~~g~c~avsVYNl--~~~~G~~iGDsV~IpeP~v~~v~i~~~~k~~~f~~IRVd~P~~l~vNGk~ 164 (166)
T 2xvs_A 96 TFGLVDSDGPCYAVMVYNI--VQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVVNGKP 164 (166)
T ss_dssp EEEEESSSSCCEEEEECCC--CSSCCCCTTCEEEEESCEEEEEEEEETTEEEEEEEEEESCGGGCEETTEE
T ss_pred EEEEECCCCCEEEEEEEec--cCCcceEecCEEEeCCCcEEEEecccCCceEEEeEEEEcCcceEEEcCCc
Confidence 3456787777777777763 34666888999999999996421 233 33 7999999999886653
No 36
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=42.66 E-value=45 Score=28.87 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC-----CC------CeEEEEEechHHHhhcC-cccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL-----EE------NTISVFLFGDAYQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL-----~~------~~VsLfLFG~A~ek~wK-l~~GtVIAILN 191 (411)
...+++|-|+...+.|++.+|..++-+.|--= .+ ..+.+.+||+..+..-+ +..|+.|.|--
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeG 93 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG 93 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEE
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 56889999999999999999998887777321 11 13899999986655433 89999998864
No 37
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=39.11 E-value=45 Score=28.07 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=46.1
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC---C---------------CCeEEEEEech-HHHhhcC-cccccEEEE
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL---E---------------ENTISVFLFGD-AYQKNWK-EHAGTVFAL 189 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL---~---------------~~~VsLfLFG~-A~ek~wK-l~~GtVIAI 189 (411)
....++|-|+...+.+.+.+|+.++.+.|.-- . ...+.+.+||+ ..+...+ +..|+.|+|
T Consensus 15 N~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG~~V~V 94 (132)
T 3ull_A 15 NRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYL 94 (132)
T ss_dssp EEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEE
T ss_pred cEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCCCEEEE
Confidence 45788999999999999999999888887311 1 02488889994 4444443 899999987
Q ss_pred EC
Q 015213 190 FN 191 (411)
Q Consensus 190 LN 191 (411)
--
T Consensus 95 ~G 96 (132)
T 3ull_A 95 EG 96 (132)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 38
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=38.49 E-value=62 Score=31.81 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=54.8
Q ss_pred CCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCC---CCCc--c
Q 015213 129 SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDA---KGPG--F 203 (411)
Q Consensus 129 ~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~---~g~~--f 203 (411)
..+++++|-|+..-.+. ..-+ ..+-+.|-.+.++-|.+.|- ..-|-+..|++|+|..|.++.-. .+.. |
T Consensus 366 ~~~~~~~~kv~~~~~~~---~~~p-~~~~~~d~~~~~~~~~~y~~--~~~~~~~~gd~~~~~~p~~~~~~~~~~~~~~~~ 439 (474)
T 4abn_A 366 NSGTVVLGKVVFSLTTE---EKVP-FTFGLVDSDGPCYAVMVYNV--VQSWGVLIGDSVAIPEPNLRHHQIRHKGKDYSF 439 (474)
T ss_dssp CTTEEEEEEEEEEECCT---TCCS-EEEEEESSSSCCEEEEECSB--CTTCCCCTTCEEEEESCEEEEEEEEETTEEEEE
T ss_pred CCCeEEEEEEEEEecCC---CCCc-eEEEEEcCCCCEEEEEEecc--cCCCceecCceEeecCCcceEeeccccCeeeEE
Confidence 35778888444332211 2222 33344666666766666664 33677889999999999995321 1222 3
Q ss_pred -eEEecCCccEEEeeeecc
Q 015213 204 -SLSVSSASQIIKMGTSVD 221 (411)
Q Consensus 204 -sLsV~s~d~ILeIG~S~D 221 (411)
++.|+++.+|++=|+...
T Consensus 440 ~~~~~~~~~~~~~~~~~~~ 458 (474)
T 4abn_A 440 SSVRVETPLLLVVNGKPQN 458 (474)
T ss_dssp EEEEESCGGGCEETTEECC
T ss_pred eEEEEcCcceeeECCEeCC
Confidence 688999999998776543
No 39
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=37.86 E-value=1.3e+02 Score=24.72 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKD 197 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~ 197 (411)
-.+-.-|-|+-|+..-+.....+|...+--|-+..++.+-.+...-..|..+.+|.-...+.-.+..-
T Consensus 28 fsfkfegrvvyksstfqnqqdskyffitaqdannqeinmsfwqkvdqsyqtlkvgqyyyfiggevkqf 95 (117)
T 3u4v_A 28 FSFKFEGRVVYKSSTFQNQQDSKYFFITAQDANNQEINMSFWQKVDQSYQTLKVGQYYYFIGGEVKQF 95 (117)
T ss_dssp TSCEEEEEEEEECCCEECTTSCEEEEEEEECTTSCEEEEEEESSTHHHHTTCCTTCEEEEESCEEEEE
T ss_pred eeEEeeeEEEEeeccccccccccEEEEEeecCCCceechHHHHHhhhhhheEeeceEEEEEccchhhh
Confidence 35667788999999888889999999999999988999999999888899999999999999888553
No 40
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=36.66 E-value=87 Score=25.95 Aligned_cols=61 Identities=10% Similarity=-0.029 Sum_probs=45.9
Q ss_pred CeEEEEEEecCCCccccCCC-ccEEEEEEeeCC------CCeEEEEEechHHHhhc-CcccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIG-QNYCIWKLGCLE------ENTISVFLFGDAYQKNW-KEHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~G-k~Y~iwkLsDL~------~~~VsLfLFG~A~ek~w-Kl~~GtVIAILN 191 (411)
.-+++|=|+...+.|.+.+| ..++-+.|---. ...+.+.+||...+..- -+..|+.|+|--
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence 45678999999999999988 888888874222 13699999998554433 278999998854
No 41
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=33.82 E-value=84 Score=29.36 Aligned_cols=61 Identities=13% Similarity=-0.034 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeC------CC------CeEEEEEechHHHhhc-CcccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCL------EE------NTISVFLFGDAYQKNW-KEHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL------~~------~~VsLfLFG~A~ek~w-Kl~~GtVIAILN 191 (411)
...++|-|+...+.|.+.+|..++.+.|.-- ++ ..+.+.+||...+..- .+..|+.|.|--
T Consensus 7 ~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G 80 (264)
T 2fxq_A 7 QVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEG 80 (264)
T ss_dssp EEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEE
T ss_pred EEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEE
Confidence 4678999999999999999999998888311 11 2478899998655544 489999998864
No 42
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=32.69 E-value=49 Score=28.08 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeC------C-C-------CeEEEEEechHHHhhc-CcccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL------E-E-------NTISVFLFGDAYQKNW-KEHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL------~-~-------~~VsLfLFG~A~ek~w-Kl~~GtVIAILN 191 (411)
....++|=|+...+.+.+.+| .++.+.|.-- . + ..+.+.+||+..+..- -+..|+.|+|--
T Consensus 16 N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 16 IMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp CEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEE
Confidence 456789999999999999999 9999988311 1 1 2588999998555443 388999998854
No 43
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=27.71 E-value=82 Score=30.42 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=46.1
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEe-e--CC---C------CeEEEEEechHHHhhcC--cccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLG-C--LE---E------NTISVFLFGDAYQKNWK--EHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLs-D--L~---~------~~VsLfLFG~A~ek~wK--l~~GtVIAILN 191 (411)
..+++|-|+...+.|.+.+|..|+.+.|- + .. + ..+.+.+||...+..-+ +..|+.|.|--
T Consensus 7 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 7 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 46789999999999999999999999883 2 11 1 25888999985444332 79999998863
No 44
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=26.51 E-value=1.3e+02 Score=25.21 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=38.5
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHH----HhhcCcccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAY----QKNWKEHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~----ek~wKl~~GtVIAILN 191 (411)
.-.+||+|.++. .+.+|..++|-|--+ .|+.-+|.+.- +..-.+++|++|-+.-
T Consensus 38 ~V~iVG~V~~~~------~~~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G 95 (136)
T 4gop_B 38 QLTFVAVVRNIS------RNATNVAYSVEDGTG-QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG 95 (136)
T ss_dssp EEEEEEEEEEEE------ECSSEEEEEEECSSC-EEEEEEECC--------CCSCCTTCEEEEEE
T ss_pred EEEEEEEEEEEE------ecCCeEEEEEECCCC-CEEEEEecccCCcccccccccCCCCEEEEEE
Confidence 456899999985 356799999999864 78888886532 1345677888776654
No 45
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=24.92 E-value=1.9e+02 Score=25.80 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=58.4
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceec
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVR 195 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im 195 (411)
-.+-.-|-|+-|+..-+.....+|.+.+--|-+..++.|-.+...-..|..+.+|.-...+...+.
T Consensus 24 fsfkfegrvvyksstfqnqqdskyffitaqdannqeinlsfwqkvdqsyqtlkvgqyyyfiggevk 89 (213)
T 3u58_A 24 FSFKFEGRVVYKSSTFQNQQDSKYFFITAQDANNQEINLSFWQKVDQSYQTLKVGQYYYFIGGEVK 89 (213)
T ss_dssp TSEEEEEEEEEECCCBCCSTTCCBEEEEEECTTSCEEEEEECSSHHHHHHHCCTTCEEEEESCEEE
T ss_pred eeEEeeeEEEEeeccccccccccEEEEEeecCCCceechHHHHHhhhhhheeeeceEEEEEcccHh
Confidence 356777899999998888889999999999999889999999998888889999999999888774
No 46
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=24.83 E-value=1.1e+02 Score=28.70 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=38.3
Q ss_pred CeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHH---hhcCcccccEEEEEC
Q 015213 131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQ---KNWKEHAGTVFALFN 191 (411)
Q Consensus 131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~e---k~wKl~~GtVIAILN 191 (411)
...+||+|.++. .+++|..++|-|=-+.+|...+|.+.-+ ....+++|++|-|.-
T Consensus 73 ~V~ivG~V~~i~------~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G 130 (270)
T 2pi2_A 73 QVTIVGIIRHAE------KAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG 130 (270)
T ss_dssp EEEEEEEEEEEE------ECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE
T ss_pred EEEEEEEEEEEE------eccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE
Confidence 466899999874 2478999999997644789988865321 244667777776653
No 47
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=24.42 E-value=1.7e+02 Score=25.46 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=45.6
Q ss_pred CCeEEEEEEecCCCccccCCCccEEEEEEeeCC-------------CCeEEEEEechH-HHhhcC-cccccEEEEEC
Q 015213 130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE-------------ENTISVFLFGDA-YQKNWK-EHAGTVFALFN 191 (411)
Q Consensus 130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~-------------~~~VsLfLFG~A-~ek~wK-l~~GtVIAILN 191 (411)
...+++|-|+...+ +.+ +|+.++.+.|.--. ...+.+.+||+. .+..-+ +..|+.|+|--
T Consensus 7 NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 7 NSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp CCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEE
Confidence 45788999999988 888 99999999883221 126899999996 444333 89999998854
No 48
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=23.38 E-value=1.7e+02 Score=24.26 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=46.8
Q ss_pred cCCceeehhhHHhhhcCC-CC------CCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHH---Hhh
Q 015213 109 SEIRFVRLSTIKNLLLGD-TL------SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAY---QKN 178 (411)
Q Consensus 109 ~~~k~vrls~Lk~~v~~~-~~------~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~---ek~ 178 (411)
....-+.+.+|.+....+ .+ -..-.++|+|.+.. ...+|..++|-|--+..+..-+|.+.= ...
T Consensus 4 ~~l~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~------~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~ 77 (132)
T 3kdf_D 4 QHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAE------KAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSEN 77 (132)
T ss_dssp -CCEECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEE------ECSSEEEEEEECSSSSCEEEEEEC---------
T ss_pred CceeeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEE------EcCCeEEEEEECCCCCEEEEEEEccCCCccccc
Confidence 344556666766554322 11 13456899999985 356899999999865489888886532 224
Q ss_pred cCcccccEEEEEC
Q 015213 179 WKEHAGTVFALFN 191 (411)
Q Consensus 179 wKl~~GtVIAILN 191 (411)
..+.+|+.|-+..
T Consensus 78 ~~~~~g~yVrV~G 90 (132)
T 3kdf_D 78 TVVPPETYVKVAG 90 (132)
T ss_dssp CCCCTTCEEEEEE
T ss_pred ccccCCCEEEEEE
Confidence 4566777666654
Done!