BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015214
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 85.1 bits (209), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----V 56
++C+GIHR+LGVHIS+V+S LD W EQ+ +Q MGN K+N +EA LP + R
Sbjct: 51 IRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDP 110
Query: 57 GIENFIRAKYEEKRWIPR 74
+E FIR KYE+K+++ R
Sbjct: 111 AVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----V 56
++C+GIHR+LGVHIS+V+S LD W EQ+ +Q MGN K+ +EA LP N+ R
Sbjct: 53 IRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQ 112
Query: 57 GIENFIR 63
+E FIR
Sbjct: 113 AVEFFIR 119
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAEL--------PPN 52
+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +GN N +EA + P+
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPS 128
Query: 53 YDRVGIENFIRAKYEEKRWIPR 74
R E +I AKY EK+++ +
Sbjct: 129 CSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP--------PN 52
+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +GN N +EA + P+
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPS 128
Query: 53 YDRVGIENFIRAKYEEKRWIPR 74
R E +I AKY EK+++ +
Sbjct: 129 CSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAEL--------PPN 52
+QCSGIHRSLGVH SKVRS TLD+W PE V ++ +GN N +EA + P+
Sbjct: 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPS 128
Query: 53 YDRVGIENFIRAKYEEKRWIPR 74
R E +I AKY EK+++ +
Sbjct: 129 CSRQEKEAWIHAKYVEKKFLTK 150
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP--------PN 52
++CSGIHR LGVH S+++S TLD ++ + +++GN N E LP P
Sbjct: 41 IECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPG 100
Query: 53 YDRVGIENFIRAKYEEKRW 71
D + +++I AKY E+R+
Sbjct: 101 SDMIARKDYITAKYMERRY 119
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIEN 60
+ CSG+HRSLGVHIS VRS +D + EQ+ I GN+K +Y E NY GI +
Sbjct: 46 INCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLE-----NY---GISD 97
Query: 61 FI-RAKYEEK 69
FI KY K
Sbjct: 98 FIPERKYRTK 107
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN-------- 52
+QCSG+HR LGV S+++S TLD P ++ + +MGN N EA+LP +
Sbjct: 66 IQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAE 125
Query: 53 YDRVGIENFIRAKYEEKRWIPRGGNTKSPSRV 84
D ++I AKY E R+ R T P R+
Sbjct: 126 SDMGTRRDYIMAKYVEHRFARR--CTPEPQRL 155
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN-------- 52
+QCSG+HR LGV S+++S TLD P ++ + +MGN N EA+LP +
Sbjct: 47 IQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAE 106
Query: 53 YDRVGIENFIRAKYEEKRWIPRGGNTKSPSRV 84
D ++I AKY E R+ R T P R+
Sbjct: 107 SDMGTRRDYIMAKYVEHRFARR--CTPEPQRL 136
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----- 55
+ CSGIHR++ +SKV+S LD W QV + S GN+ + + +E+++P Y R
Sbjct: 60 LSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSD 118
Query: 56 --VGIENFIRAKYEEKRWI 72
+ E +IRAKYE + +I
Sbjct: 119 CQLLREQWIRAKYERQEFI 137
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----- 55
+ CSGIHR++ +SKV+S LD W QV + S GN+ + + +E+++P Y R
Sbjct: 58 LSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSD 116
Query: 56 --VGIENFIRAKYEEKRWI 72
+ E +IRAKYE + +I
Sbjct: 117 CQLLREQWIRAKYERQEFI 135
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 54
++CSG HR LGVH+S VRS T+D W ++ +++ GN K + E++ +YD
Sbjct: 61 LECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQ--EDYD 112
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD 54
++CSG HR LGVH+S VRS T+D W ++ +++ GN K + E++ +YD
Sbjct: 62 LECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQ--EDYD 113
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY 53
+ CS HR +GVHIS VRS+ LD + P Q+ + GN ++ +Y++ L N+
Sbjct: 60 LNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF 112
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEKSNSYWE 46
+ CSG+HRSLGVH+S +RS LD+ W Q+ +Q GN + +++
Sbjct: 61 IDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFR 107
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 1 MQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEKSNSY 44
+ CSG HRSLGVH+S +RS LD+ W Q+ +Q GN ++S+
Sbjct: 53 IDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSF 97
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 3 CSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYW-------EAELPPNYDR 55
CSG R L +V+S ++ T+ +++ +Q GNE W + +P D
Sbjct: 51 CSGSLRGLNP-PHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 109
Query: 56 VGIENFIRAKYEEKRW 71
++ F++ KYE+KRW
Sbjct: 110 QKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 3 CSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYW-------EAELPPNYDR 55
CSG R L +V+S ++ T+ +++ +Q GNE W + +P D
Sbjct: 46 CSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 104
Query: 56 VGIENFIRAKYEEKRW 71
++ F++ KYE+KRW
Sbjct: 105 QKVKEFLQEKYEKKRW 120
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 259 QTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLF---GKSEMVSPF-SID---QQQSF 311
+ R R+ + FM P + + + + N + +++ GK+EM + F D ++ +F
Sbjct: 544 ERRIRLSEKFMDPPGTAMADCLIAAR-IANALRDMYQKDGKAEMAAQFEGFDWKTEEDAF 602
Query: 312 L---------AAASVNSNGGSQSFPIN---VHQPGSNGIHVPIQSW----GVVGHQV 352
A +++S GGS + + + G+NG+ +P+ SW G+VG ++
Sbjct: 603 NDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDESKGLVGTEM 659
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 50 PPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFH 92
PP++ RVG E ++ YE W+ RG P + ++ +
Sbjct: 881 PPDFPRVGYEFWLGDSYESFEWLGRGPGESYPDKKESQRFGLY 923
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Query: 259 QTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLF---GKSEMVSPF-SID---QQQSF 311
+ R R+ + FM P + + + + N + +++ GK+EM + F D ++ +F
Sbjct: 544 ERRIRLSEKFMDPPGTAMADCLIAAR-IANALRDMYQKDGKAEMAAQFEGFDWKTEEDAF 602
Query: 312 L---------AAASVNSNGGSQSFPIN---VHQPGSNGIHVPIQSW----GVVGHQV 352
A +++S GGS + + + G+NG+ +P+ SW G+VG ++
Sbjct: 603 NDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQLPVVSWDESKGLVGTEM 659
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 33 IQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI 72
+ + ++ YWE E+ P Y RV F+ + EKRW+
Sbjct: 56 MTKLATDELFDYWECEVTPPYRRVKY-GFLLQQGHEKRWM 94
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 196 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 255
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 256 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 314
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 315 A-SVNSN 320
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 196 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 255
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 256 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 314
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 315 A-SVNSN 320
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 196 EASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATE 255
+ S Q +D AT L L+ EN + ++ SC N+ S A+T+ I +S
Sbjct: 181 QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSRGIRASF--- 237
Query: 256 SKVQTRYRIE-DLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA 314
+ Y ++ DL ++ +V +++ V D + + M +P ++A
Sbjct: 238 ----SNYGVDVDLAAPGQDILSTVDSGTRRPVS-DAYSFMAGTSMATPHVSGVAALVISA 292
Query: 315 A-SVNSN 320
A SVN N
Sbjct: 293 ANSVNKN 299
>pdb|2KZI|A Chain A, Solution Structure Of The Zher2 Affibody
pdb|2KZJ|A Chain A, Solution Structure Of The Zher2 Affibody (Alternative)
Length = 70
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 30 VAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEE 68
+ V E N+YWE L PN + FIR+ Y++
Sbjct: 11 LQVDNKFNKEMRNAYWEIALLPNLNNQQKRAFIRSLYDD 49
>pdb|3VJJ|A Chain A, Crystal Structure Analysis Of The P9-1
pdb|3VJJ|B Chain B, Crystal Structure Analysis Of The P9-1
Length = 368
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 14/49 (28%)
Query: 151 EPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEAST 199
+P ++PT+P++E K++NS+P PK PK+E T
Sbjct: 151 KPSSETDPTIPENE--------------KEENSKPVTPKVVTPKEEKKT 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,257,719
Number of Sequences: 62578
Number of extensions: 495548
Number of successful extensions: 826
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 34
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)